BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025838
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IZ6|D Chain D, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 265
Score = 456 bits (1173), Expect = e-129, Method: Compositional matrix adjust.
Identities = 215/237 (90%), Positives = 230/237 (97%)
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRT 60
MLDKLGGAFAPKPSSGPHKSRECLPLILI+RNRLKYALTYREVI+ILMQRHVLVD KVRT
Sbjct: 19 MLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRT 78
Query: 61 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPY 120
DKTYPAGFMDV+SIPKT EN+RLLYDTKGRFRL S++DE+AKFKLCKVRSVQFGQKGIPY
Sbjct: 79 DKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPY 138
Query: 121 INTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNR 180
+NTYDGRTIRYPDP+IKANDTIK+DLETNKI +FIKFDVGNVVMVTGGRN GRVG+IKNR
Sbjct: 139 LNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNR 198
Query: 181 EKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 237
EKHKGSFETIH++DALGH+FATRLGNVFTIGKG KPWVSLPKGKGIKLSIIEE RKR
Sbjct: 199 EKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQRKR 255
>pdb|3IZB|D Chain D, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3U5C|E Chain E, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|E Chain E, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 261
Score = 337 bits (865), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 159/239 (66%), Positives = 194/239 (81%)
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRT 60
+LDKL G +AP+PS+GPHK RE LPLI+ LRNRLKYAL REV AILMQRHV VD KVRT
Sbjct: 19 LLDKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRT 78
Query: 61 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPY 120
D TYPAGFMDV+++ TNENFRL+YD KGRF +H I DEEA +KL KV+ VQ G+KG+PY
Sbjct: 79 DTTYPAGFMDVITLDATNENFRLVYDVKGRFAVHRITDEEASYKLGKVKKVQLGKKGVPY 138
Query: 121 INTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNR 180
+ T+DGRTIRYPDP IK NDT+K+DL + KIT+FIKFD G +V VTGGRN GR+G I ++
Sbjct: 139 VVTHDGRTIRYPDPNIKVNDTVKIDLASGKITDFIKFDAGKLVYVTGGRNLGRIGTIVHK 198
Query: 181 EKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRQA 239
E+H G F+ +HI+D+L + F TRL NVF IG+ KP++SLPKGKGIKLSI EE +R+A
Sbjct: 199 ERHDGGFDLVHIKDSLDNTFVTRLNNVFVIGEQGKPYISLPKGKGIKLSIAEERDRRRA 257
>pdb|2XZM|W Chain W, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|W Chain W, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 260
Score = 266 bits (681), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 133/240 (55%), Positives = 172/240 (71%), Gaps = 3/240 (1%)
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAIL--MQRHVLVDAKV 58
ML+KLGG +A +PS GPHK RE LPL ++L+ RL YAL R+V IL +++V VD KV
Sbjct: 19 MLNKLGGIWATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKV 78
Query: 59 RTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGI 118
R DK YP G MDVV I KT+++FR+LYDTKGRF L S+ EEAK+KL KV + G I
Sbjct: 79 RRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQI 138
Query: 119 PYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIK 178
PYI T+D RTIR+P+P IK DT+K DL NKI F + GNV + G N GRVGII+
Sbjct: 139 PYIVTHDSRTIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQ 198
Query: 179 NREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRQ 238
+ EKH+GSF+ H++DA G+ FATRLGN+F +G+G K W+ LP G G++ +I+EE RKR+
Sbjct: 199 HIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQGKKSWIELPSGDGVRETILEE-RKRK 257
>pdb|3ZEY|1 Chain 1, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 273
Score = 241 bits (614), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 122/234 (52%), Positives = 156/234 (66%), Gaps = 1/234 (0%)
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRT 60
ML KL G FAP+P +GPHK RECL L++I+RNRLKYAL E IL Q V VD K R
Sbjct: 16 MLSKLTGVFAPRPRAGPHKLRECLSLLIIIRNRLKYALNALEAQMILRQGLVCVDGKPRK 75
Query: 61 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPY 120
D YPAGFMDVV IPKT + FR+LYD KGRF L + + E+ K+ KV +V G IP
Sbjct: 76 DGKYPAGFMDVVEIPKTGDRFRILYDVKGRFALVRVSEAESSIKMMKVVNVYTGTGRIPV 135
Query: 121 INTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNR 180
T+DG IRYPDP DT+ D++ K+ + IK G VVMVTGG NRGR+G I +
Sbjct: 136 AVTHDGHRIRYPDPRTSRGDTLVYDVKEKKVLDLIKIGNGKVVMVTGGANRGRIGEIVSI 195
Query: 181 EKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPW-VSLPKGKGIKLSIIEE 233
E+H G+F+ ++DA GHEFATR N+F IGK V+LPK +G+++++I+E
Sbjct: 196 ERHPGAFDIARLKDASGHEFATRATNIFVIGKDMSSVPVTLPKQQGLRINVIQE 249
>pdb|3J20|E Chain E, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (30s Ribosomal Subunit)
Length = 243
Score = 114 bits (284), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 117/218 (53%), Gaps = 7/218 (3%)
Query: 9 FAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGF 68
+A +P GPH R +PL+ I+R+ L YA T RE IL + LVD +VR D +P G
Sbjct: 28 WAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGI 87
Query: 69 MDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR- 127
MDVVSIP+T E++R+L + G+ LH I ++EA K ++R+ + + +N +DG
Sbjct: 88 MDVVSIPETGEHYRVLPNRIGKLILHPISEDEAFIKPLRIRNKRMIKGARVQLNFHDGTN 147
Query: 128 ---TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG-IIKNREKH 183
+I D + T+ + + +I E + F+ G V VT G+N R G I++ +
Sbjct: 148 HIVSIAEKDNYFTSY-TVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKRFP 206
Query: 184 KGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLP 221
G + + I+D G F T F +G KP +SLP
Sbjct: 207 MGWPDVVTIEDEEGELFDTLKEYAFVVGT-DKPKISLP 243
>pdb|3KBG|A Chain A, Crystal Structure Of The 30s Ribosomal Protein S4e From
Thermoplasma Acidophilum. Northeast Structural Genomics
Consortium Target Tar28
Length = 213
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 97/206 (47%), Gaps = 7/206 (3%)
Query: 18 HKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKT 77
H + + L+ I+R+ LK + RE IL V VD K +K + GF DV+ I
Sbjct: 2 HPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFXDVIEI--N 59
Query: 78 NENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIK 137
E++R++Y+ +G L E A KL KVRS + T+DGRT D IK
Sbjct: 60 GESYRVVYNDQGALVLXKETKERASXKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSIK 119
Query: 138 ANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFET-IHIQDAL 196
D + + + KI+E IK GN +T G + + G I E +GS +H Q+
Sbjct: 120 VGDVLAVSVPDXKISEIIKXQPGNKAYITAGSHVNQTGTISKIEAKEGSSANLVHFQEG- 178
Query: 197 GHEFATRLGNVFTIGKGTKPWVSLPK 222
F+T +VF IG +V P+
Sbjct: 179 ---FSTIKDHVFXIGSSKFSFVLSPE 201
>pdb|4H3V|A Chain A, Crystal Structure Of Oxidoreductase Domain Protein From
Kribbella Flavida
pdb|4H3V|B Chain B, Crystal Structure Of Oxidoreductase Domain Protein From
Kribbella Flavida
Length = 390
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 33 RLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFM-DVVSIPKTNENFRLLYDTKGRF 91
R TYR V AI + R ++ D K+ T + A ++ D ++ P+ ++RL D G
Sbjct: 131 RSXVGFTYRRVPAIALARKLVADGKIGTVRHVRAQYLQDWIADPEAPLSWRLDKDKAGSG 190
Query: 92 RLHSI 96
L I
Sbjct: 191 ALGDI 195
>pdb|2AE7|A Chain A, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|2AE7|B Chain B, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|2AE7|C Chain C, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|2AEC|A Chain A, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,6-Man-
Beta-Or
pdb|2AEC|B Chain B, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,6-Man-
Beta-Or
pdb|2AEC|C Chain C, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,6-Man-
Beta-Or
pdb|2AES|A Chain A, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,3-Man-
Beta-Or
pdb|2AES|B Chain B, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,3-Man-
Beta-Or
pdb|2AES|C Chain C, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,3-Man-
Beta-Or
pdb|2AGD|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase- I(M340h-B4gal-T1)
In Complex With Glcnac-Beta1,4-Man-Alpha1,3-Man-
Beta-Or
pdb|2AGD|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase- I(M340h-B4gal-T1)
In Complex With Glcnac-Beta1,4-Man-Alpha1,3-Man-
Beta-Or
pdb|2AGD|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase- I(M340h-B4gal-T1)
In Complex With Glcnac-Beta1,4-Man-Alpha1,3-Man-
Beta-Or
pdb|2AH9|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Chitotriose
pdb|2AH9|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Chitotriose
pdb|2AH9|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Chitotriose
pdb|2FY7|A Chain A, Crystal Structure Of The Catalytic Domain Of The Human
Beta1,4-galactosyltransferase Mutant M339h In Apo Form
pdb|2FYA|A Chain A, Crystal Structure Of The Catalytic Domain Of The Human
Beta1, 4-Galactosyltransferase Mutant M339h Complex
With Manganese
pdb|2FYB|A Chain A, Crystal Structure Of The Catalytic Domain Of The Human
Beta1,4-Galactosyltransferase Mutant M339h In Complex
With Mn And Udp-Galactose In Open Conformation
pdb|3EE5|A Chain A, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,3-Gal-Beta-
Naphthalenemethanol
pdb|3EE5|B Chain B, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,3-Gal-Beta-
Naphthalenemethanol
pdb|3EE5|C Chain C, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,3-Gal-Beta-
Naphthalenemethanol
pdb|4EE3|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|4EE3|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|4EE3|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|4EE4|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Tetrasaccharide From Lacto-N- Neohexose
pdb|4EE4|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Tetrasaccharide From Lacto-N- Neohexose
pdb|4EE4|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Tetrasaccharide From Lacto-N- Neohexose
pdb|4EE5|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Trisaccharide From Lacto-N- Neotetraose
pdb|4EE5|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Trisaccharide From Lacto-N- Neotetraose
pdb|4EE5|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Trisaccharide From Lacto-N- Neotetraose
pdb|4EEA|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta1,4-Glc-Beta
pdb|4EEA|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta1,4-Glc-Beta
pdb|4EEA|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta1,4-Glc-Beta
pdb|4EEG|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta
pdb|4EEG|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta
pdb|4EEG|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta
pdb|4EEM|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Man-Alpha-Methyl
pdb|4EEM|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Man-Alpha-Methyl
pdb|4EEM|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Man-Alpha-Methyl
pdb|4EEO|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Glcnac-Alpha-Benzyl
pdb|4EEO|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Glcnac-Alpha-Benzyl
pdb|4EEO|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Glcnac-Alpha-Benzyl
Length = 287
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 10/53 (18%)
Query: 4 KLGGAFAPKPSSGPHKSRECLPLILILRNR---LKYALTYREVIAILMQRHVL 53
K+GG +AP+ PHK + +I+ RNR LKY L Y + ++QR L
Sbjct: 51 KMGGRYAPRDCVSPHK----VAIIIPFRNRQEHLKYWLYY---LHPVLQRQQL 96
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 28 LILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDT 87
++L RL Y L R+V LVDA + PA V K F L YDT
Sbjct: 234 VMLSTRLPYVLLRRDVY------RPLVDAFTKALAAQPANGAPVARAVKPVAPFELCYDT 287
Query: 88 K 88
K
Sbjct: 288 K 288
>pdb|1NHE|B Chain B, Crystal Structure Of Lactose Synthase Complex With Udp
pdb|1NHE|D Chain D, Crystal Structure Of Lactose Synthase Complex With Udp
Length = 286
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 4 KLGGAFAPKPSSGPHKSRECLPLILILRNR---LKYALTYREVIAILMQRHVL 53
KLGG + P PHK + +I+ RNR LKY L Y I +QR L
Sbjct: 50 KLGGRYTPXDCISPHK----VAIIIPFRNRQEHLKYWLYYLHPI---LQRQQL 95
>pdb|2FYD|B Chain B, Catalytic Domain Of Bovine Beta 1,
4-Galactosyltransferase In Complex With
Alpha-Lactalbumin, Glucose, Mn, And Udp-N-
Acetylgalactosamine
pdb|2FYD|D Chain D, Catalytic Domain Of Bovine Beta 1,
4-Galactosyltransferase In Complex With
Alpha-Lactalbumin, Glucose, Mn, And Udp-N-
Acetylgalactosamine
Length = 286
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 4 KLGGAFAPKPSSGPHKSRECLPLILILRNR---LKYALTYREVIAILMQRHVL 53
KLGG + P PHK + +I+ RNR LKY L Y I +QR L
Sbjct: 50 KLGGRYTPMDCISPHK----VAIIIPFRNRQEHLKYWLYYLHPI---LQRQQL 95
>pdb|1NMM|B Chain B, Beta-1,4-Galactosyltransferase Mutant Cys342thr Complex
With Alpha- Lactalbumin And Glcnac
pdb|1NMM|D Chain D, Beta-1,4-Galactosyltransferase Mutant Cys342thr Complex
With Alpha- Lactalbumin And Glcnac
pdb|1O0R|A Chain A, Crystal Structure Of The Catalytic Domain Of Bovine
Beta1,4- Galactosyltransferase Complex With
Udp-Galactose
pdb|1O0R|B Chain B, Crystal Structure Of The Catalytic Domain Of Bovine
Beta1,4- Galactosyltransferase Complex With
Udp-Galactose
Length = 286
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 4 KLGGAFAPKPSSGPHKSRECLPLILILRNR---LKYALTYREVIAILMQRHVL 53
KLGG + P PHK + +I+ RNR LKY L Y I +QR L
Sbjct: 50 KLGGRYTPMDCISPHK----VAIIIPFRNRQEHLKYWLYYLHPI---LQRQQL 95
>pdb|1FR8|A Chain A, Crystal Structure Of The Bovine Beta 1,4
Galactosyltransferase (B4galt1) Catalytic Domain
Complexed With Uridine Diphosphogalactose
pdb|1FR8|B Chain B, Crystal Structure Of The Bovine Beta 1,4
Galactosyltransferase (B4galt1) Catalytic Domain
Complexed With Uridine Diphosphogalactose
Length = 288
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 4 KLGGAFAPKPSSGPHKSRECLPLILILRNR---LKYALTYREVIAILMQRHVL 53
KLGG + P PHK + +I+ RNR LKY L Y I +QR L
Sbjct: 52 KLGGRYTPMDCISPHK----VAIIIPFRNRQEHLKYWLYYLHPI---LQRQQL 97
>pdb|1YRO|B Chain B, Crystal Structure Of Beta14,-Galactosyltransferase
Mutant Arg228lys In Complex With Alpha-Lactalbumin In
The Presence Of Udp-Galactose And Mn
pdb|1YRO|D Chain D, Crystal Structure Of Beta14,-Galactosyltransferase
Mutant Arg228lys In Complex With Alpha-Lactalbumin In
The Presence Of Udp-Galactose And Mn
Length = 286
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 4 KLGGAFAPKPSSGPHKSRECLPLILILRNR---LKYALTYREVIAILMQRHVL 53
KLGG + P PHK + +I+ RNR LKY L Y I +QR L
Sbjct: 50 KLGGRYTPMDCISPHK----VAIIIPFRNRQEHLKYWLYYLHPI---LQRQQL 95
>pdb|1TVY|A Chain A, Beta-1,4-Galactosyltransferase Mutant Met344his
(M344h-Gal- T1) Complex With Udp-Galactose And
Manganese
pdb|1TVY|B Chain B, Beta-1,4-Galactosyltransferase Mutant Met344his
(M344h-Gal- T1) Complex With Udp-Galactose And
Manganese
pdb|1TW1|A Chain A, Beta-1,4-galactosyltransferase Mutant Met344his
(m344h-gal- T1) Complex With Udp-galactose And
Magnesium
pdb|1TW1|B Chain B, Beta-1,4-galactosyltransferase Mutant Met344his
(m344h-gal- T1) Complex With Udp-galactose And
Magnesium
pdb|1TW5|A Chain A, Beta1,4-Galactosyltransferase Mutant M344h-Gal-T1 In
Complex With Chitobiose
pdb|1TW5|B Chain B, Beta1,4-Galactosyltransferase Mutant M344h-Gal-T1 In
Complex With Chitobiose
pdb|2FYC|B Chain B, Crystal Structure Of The Catalytic Domain Of Bovine
Beta1,4- Galactosyltransferase-I In Complex With
Alpha-Lactalbumin, Ca And Udp-Galactose
pdb|2FYC|D Chain D, Crystal Structure Of The Catalytic Domain Of Bovine
Beta1,4- Galactosyltransferase-I In Complex With
Alpha-Lactalbumin, Ca And Udp-Galactose
Length = 286
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 4 KLGGAFAPKPSSGPHKSRECLPLILILRNR---LKYALTYREVIAILMQRHVL 53
KLGG + P PHK + +I+ RNR LKY L Y I +QR L
Sbjct: 50 KLGGRYTPMDCISPHK----VAIIIPFRNRQEHLKYWLYYLHPI---LQRQQL 95
>pdb|1FGX|A Chain A, Crystal Structure Of The Bovine Beta 1,4
Galactosyltransferase (B4galt1) Catalytic Domain
Complexed With Ump
pdb|1FGX|B Chain B, Crystal Structure Of The Bovine Beta 1,4
Galactosyltransferase (B4galt1) Catalytic Domain
Complexed With Ump
Length = 288
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 4 KLGGAFAPKPSSGPHKSRECLPLILILRNR---LKYALTYREVIAILMQRHVL 53
KLGG + P PHK + +I+ RNR LKY L Y I +QR L
Sbjct: 52 KLGGRYTPMDCISPHK----VAIIIPFRNRQEHLKYWLYYLHPI---LQRQQL 97
>pdb|1PZY|B Chain B, W314a-Beta1,4-Galactosyltransferase-I Complexed With
Alpha-Lactalbumin In The Presence Of
N-Acetylglucosamine, Udp And Manganese
pdb|1PZY|D Chain D, W314a-Beta1,4-Galactosyltransferase-I Complexed With
Alpha-Lactalbumin In The Presence Of
N-Acetylglucosamine, Udp And Manganese
pdb|1PZT|A Chain A, Crystal Structure Of
W314a-beta-1,4-galactosyltransferase (b4gal-t1)
Catalytic Domain Without Substrate
Length = 286
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 4 KLGGAFAPKPSSGPHKSRECLPLILILRNR---LKYALTYREVIAILMQRHVL 53
KLGG + P PHK + +I+ RNR LKY L Y I +QR L
Sbjct: 50 KLGGRYTPMDCISPHK----VAIIIPFRNRQEHLKYWLYYLHPI---LQRQQL 95
>pdb|1NF5|B Chain B, Crystal Structure Of Lactose Synthase, Complex With
Glucose
pdb|1NF5|D Chain D, Crystal Structure Of Lactose Synthase, Complex With
Glucose
pdb|1NKH|B Chain B, Crystal Structure Of Lactose Synthase Complex With Udp
And Manganese
pdb|1NKH|D Chain D, Crystal Structure Of Lactose Synthase Complex With Udp
And Manganese
pdb|1NQI|B Chain B, Crystal Structure Of Lactose Synthase, A 1:1 Complex
Between Beta1,4- Galactosyltransferase And
Alpha-Lactalbumin In The Presence Of Glcnac
pdb|1NQI|D Chain D, Crystal Structure Of Lactose Synthase, A 1:1 Complex
Between Beta1,4- Galactosyltransferase And
Alpha-Lactalbumin In The Presence Of Glcnac
pdb|1NWG|B Chain B, Beta-1,4-Galactosyltransferase Complex With Alpha-
Lactalbumin And N-Butanoyl-Glucoamine
pdb|1NWG|D Chain D, Beta-1,4-Galactosyltransferase Complex With Alpha-
Lactalbumin And N-Butanoyl-Glucoamine
pdb|1O23|B Chain B, Crystal Structure Of Lactose Synthase In The Presence Of
Udp-glucose
pdb|1O23|D Chain D, Crystal Structure Of Lactose Synthase In The Presence Of
Udp-glucose
pdb|1OQM|B Chain B, A 1:1 Complex Between Alpha-Lactalbumin And Beta1,4-
Galactosyltransferase In The Presence Of Udp-N-Acetyl-
Galactosamine
pdb|1OQM|D Chain D, A 1:1 Complex Between Alpha-Lactalbumin And Beta1,4-
Galactosyltransferase In The Presence Of Udp-N-Acetyl-
Galactosamine
Length = 286
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 4 KLGGAFAPKPSSGPHKSRECLPLILILRNR---LKYALTYREVIAILMQRHVL 53
KLGG + P PHK + +I+ RNR LKY L Y I +QR L
Sbjct: 50 KLGGRYTPMDCISPHK----VAIIIPFRNRQEHLKYWLYYLHPI---LQRQQL 95
>pdb|1N9L|A Chain A, Crystal Structure Of The Phot-lov1 Domain From
Chlamydomonas Reinhardtii In The Dark State.
pdb|1N9N|A Chain A, Crystal Structure Of The Phot-Lov1 Domain From
Chlamydomonas Reinhardtii In Illuminated State. Data Set
Of A Single Crystal.
pdb|1N9O|A Chain A, Crystal Structure Of The Phot-Lov1 Domain From
Chlamydomonas Reinhardtii In Illuminated State.
Composite Data Set
Length = 109
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 27/57 (47%)
Query: 92 RLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLET 148
+ IRD K + C VR + + + G P+ N I+ PD + +++D+ +
Sbjct: 53 EVQKIRDAIKKGEACSVRLLNYRKDGTPFWNLLTVTPIKTPDGRVSKFVGVQVDVTS 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,325,435
Number of Sequences: 62578
Number of extensions: 301969
Number of successful extensions: 589
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 579
Number of HSP's gapped (non-prelim): 19
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)