Query 025838
Match_columns 247
No_of_seqs 122 out of 333
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 18:42:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025838.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025838hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz6_D 40S ribosomal protein S 100.0 3E-112 9E-117 766.8 19.8 245 1-245 19-263 (265)
2 3u5c_E RP5, S7, YS6, 40S ribos 100.0 1E-111 4E-116 761.2 17.1 242 1-242 19-260 (261)
3 2xzm_W 40S ribosomal protein S 100.0 4E-109 1E-113 744.9 24.7 239 1-239 19-259 (260)
4 3j20_E 30S ribosomal protein S 100.0 2.5E-99 9E-104 676.3 21.7 220 1-221 20-243 (243)
5 3kbg_A 30S ribosomal protein S 100.0 1.9E-86 6.7E-91 583.4 20.1 203 17-226 1-204 (213)
6 1p9k_A ORF, hypothetical prote 97.4 0.00012 4.1E-09 53.8 3.7 57 24-83 21-77 (79)
7 2cqj_A BRMS2, U3 small nucleol 96.9 0.00056 1.9E-08 49.9 2.8 43 34-76 17-61 (71)
8 3j20_D 30S ribosomal protein S 96.3 0.0021 7.1E-08 55.1 2.9 44 34-77 112-157 (180)
9 1c05_A Ribosomal protein S4 de 96.0 0.0069 2.4E-07 50.3 4.9 50 26-76 53-102 (159)
10 3bbn_D Ribosomal protein S4; s 96.0 0.0073 2.5E-07 52.4 5.1 43 34-76 98-140 (201)
11 2vqe_D 30S ribosomal protein S 95.4 0.015 5.3E-07 50.3 4.9 43 34-76 108-150 (209)
12 3u5c_J 40S ribosomal protein S 95.4 0.0051 1.7E-07 53.4 1.8 44 34-77 116-161 (197)
13 2xzm_D Ribosomal protein S4 co 95.2 0.009 3.1E-07 51.0 2.8 42 34-75 116-159 (181)
14 1ksk_A Ribosomal small subunit 95.1 0.032 1.1E-06 48.0 6.0 52 22-75 2-53 (234)
15 1dm9_A Hypothetical 15.5 KD pr 95.1 0.057 1.9E-06 43.5 7.0 60 21-82 6-65 (133)
16 3r8n_D 30S ribosomal protein S 94.9 0.0094 3.2E-07 51.9 2.0 43 34-76 104-146 (205)
17 2do3_A Transcription elongatio 94.8 0.049 1.7E-06 40.0 5.4 46 157-206 18-63 (69)
18 1vio_A Ribosomal small subunit 94.5 0.042 1.4E-06 47.6 5.1 65 23-89 2-72 (243)
19 2ckk_A KIN17; beta barrel, rib 94.1 0.11 3.8E-06 41.8 6.5 41 139-182 56-96 (127)
20 3dh3_A Ribosomal large subunit 93.9 0.09 3.1E-06 47.4 6.1 67 22-91 5-79 (290)
21 2k6p_A Uncharacterized protein 93.8 0.017 5.7E-07 43.0 1.0 53 27-81 4-56 (92)
22 1v9f_A Ribosomal large subunit 92.1 0.058 2E-06 48.7 2.1 73 22-95 15-97 (325)
23 3iz6_C 40S ribosomal protein S 92.0 0.0048 1.6E-07 53.5 -4.9 42 34-75 118-159 (195)
24 1h3f_A Tyrosyl-tRNA synthetase 91.4 0.33 1.1E-05 46.2 6.6 44 23-67 368-411 (432)
25 2ktl_A Tyrosyl-tRNA synthetase 91.4 0.19 6.5E-06 42.4 4.4 75 25-100 51-139 (164)
26 2jan_A Tyrosyl-tRNA synthetase 90.9 0.5 1.7E-05 45.0 7.4 66 25-96 357-422 (432)
27 3hp7_A Hemolysin, putative; st 90.4 0.16 5.3E-06 45.9 3.2 52 24-76 7-60 (291)
28 1jil_A Tyrrs, tyrosyl-tRNA syn 85.6 0.16 5.3E-06 48.2 0.0 48 23-71 352-399 (420)
29 1vq8_T 50S ribosomal protein L 81.7 1.8 6.1E-05 34.7 4.7 56 153-211 39-101 (120)
30 3u5e_Y L33, YL33, 60S ribosoma 81.1 2.2 7.4E-05 34.6 5.0 56 153-211 46-108 (127)
31 3j21_U 50S ribosomal protein L 79.6 2.3 7.7E-05 34.1 4.6 56 153-211 42-104 (121)
32 2ts1_A Tyrosyl-tRNA synthetase 78.5 0.42 1.4E-05 45.3 0.0 44 24-68 352-395 (419)
33 1nz9_A Transcription antitermi 76.7 5.9 0.0002 26.8 5.5 43 155-199 3-45 (58)
34 3r8s_U 50S ribosomal protein L 70.1 3.8 0.00013 31.8 3.5 34 156-193 3-36 (102)
35 4a17_S RPL26, 60S ribosomal pr 69.3 6 0.0002 32.3 4.7 56 153-211 45-107 (135)
36 3iz5_Y 60S ribosomal protein L 68.8 5.1 0.00017 33.3 4.2 73 153-237 45-124 (150)
37 2ftc_N Mitochondrial ribosomal 68.0 6.1 0.00021 30.3 4.3 23 160-182 1-23 (96)
38 3v2d_Y 50S ribosomal protein L 67.9 3 0.0001 32.9 2.5 29 155-183 5-33 (110)
39 2zjr_R 50S ribosomal protein L 66.6 4.1 0.00014 32.2 3.2 36 156-194 15-50 (115)
40 4a18_F RPL14; ribosome, eukary 64.9 5 0.00017 32.4 3.4 32 157-192 7-38 (126)
41 2zkr_t 60S ribosomal protein L 62.9 3.9 0.00013 33.7 2.5 55 154-211 46-108 (145)
42 3iz5_N 60S ribosomal protein L 57.1 5.7 0.0002 32.3 2.4 26 157-182 7-32 (134)
43 2wg5_A General control protein 56.1 25 0.00087 27.0 5.9 46 119-164 52-103 (109)
44 2e6z_A Transcription elongatio 55.3 5 0.00017 27.7 1.6 27 155-181 6-32 (59)
45 4a18_N RPL27, ribosomal protei 51.5 9.5 0.00033 31.4 2.9 26 157-182 5-30 (144)
46 3izc_N 60S ribosomal protein R 49.2 9.1 0.00031 31.3 2.4 32 157-192 15-46 (138)
47 3j21_5 50S ribosomal protein L 48.6 8 0.00027 28.8 1.9 25 157-181 4-28 (83)
48 2joy_A 50S ribosomal protein L 48.2 9.7 0.00033 28.9 2.3 51 157-211 4-58 (96)
49 3p8b_B Transcription antitermi 39.8 15 0.00052 29.2 2.4 29 155-183 90-118 (152)
50 2x1d_A Acyl-coenzyme A\:6-amin 37.7 63 0.0022 28.4 6.3 29 21-50 176-204 (357)
51 3m9b_A Proteasome-associated A 34.4 57 0.002 29.0 5.4 51 134-199 133-183 (251)
52 2jvv_A Transcription antitermi 32.8 30 0.001 28.2 3.2 28 155-182 126-153 (181)
53 1i3z_A EWS/FLI1 activated tran 31.4 1.4E+02 0.0049 21.4 6.5 53 38-94 10-66 (103)
54 2iwa_A Glutamine cyclotransfer 31.1 84 0.0029 27.3 6.0 60 92-158 127-191 (266)
55 2in0_A Endonuclease PI-MTUI; h 29.8 64 0.0022 24.7 4.5 25 187-211 54-78 (139)
56 3kdf_D Replication protein A 3 29.5 1.9E+02 0.0065 22.1 9.0 78 49-129 21-109 (132)
57 1q7h_A Conserved hypothetical 28.5 42 0.0015 26.5 3.3 40 110-150 71-115 (153)
58 3e0e_A Replication protein A; 28.5 1.1E+02 0.0037 22.4 5.3 10 156-165 63-72 (97)
59 3gvz_A Uncharacterized protein 28.4 42 0.0014 29.9 3.5 30 20-49 103-132 (299)
60 2lcj_A PAB POLC intein; hydrol 27.4 1.3E+02 0.0045 24.3 6.2 43 103-145 74-120 (185)
61 3lag_A Uncharacterized protein 26.9 99 0.0034 22.4 4.9 59 106-169 17-75 (98)
62 2hbp_A Cytoskeleton assembly c 26.9 60 0.0021 23.5 3.5 44 81-138 5-48 (68)
63 2qf4_A Cell shape determining 26.6 2.2E+02 0.0075 23.1 7.4 60 133-212 106-166 (172)
64 1d4t_A T cell signal transduct 26.5 1.3E+02 0.0044 21.8 5.5 54 37-94 10-67 (104)
65 1zv1_A Doublesex protein; UBA 26.1 26 0.0009 25.2 1.4 29 21-52 24-53 (65)
66 3hrd_D Nicotinate dehydrogenas 25.7 38 0.0013 27.9 2.6 53 22-78 21-81 (160)
67 3iuw_A Activating signal coint 25.2 44 0.0015 24.9 2.6 17 129-145 31-47 (83)
68 2oqc_A Penicillin V acylase; N 24.6 2.2E+02 0.0076 25.2 7.6 66 20-99 94-159 (327)
69 2pa7_A DTDP-6-deoxy-3,4-keto-h 24.2 2.7E+02 0.0091 22.1 8.6 50 111-166 59-111 (141)
70 1ka6_A SH2 domain protein 1A; 23.8 1.3E+02 0.0044 22.9 5.2 53 38-94 11-67 (128)
71 2bjf_A Choloylglycine hydrolas 23.6 2.4E+02 0.0083 24.9 7.7 66 20-99 96-161 (329)
72 2quy_A Penicillin acylase; aut 23.1 41 0.0014 30.0 2.5 65 21-99 97-161 (335)
73 3r4d_A CEA-related cell adhesi 22.7 1.7E+02 0.0059 21.9 5.8 66 82-147 64-133 (208)
74 3dcl_A TM1086; SAD, structural 21.4 43 0.0015 30.3 2.2 73 116-192 24-118 (284)
75 4gop_B Putative uncharacterize 20.2 2.9E+02 0.01 21.1 6.9 78 49-129 26-114 (136)
76 3bbo_W Ribosomal protein L24; 20.1 14 0.00049 31.7 -1.1 26 157-182 69-94 (191)
No 1
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.8e-112 Score=766.80 Aligned_cols=245 Identities=89% Similarity=1.404 Sum_probs=199.3
Q ss_pred CCcccCceeccCCCCCCCCCcccchHHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeeEEeccCCce
Q 025838 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNEN 80 (247)
Q Consensus 1 ml~K~~~~~a~kpspGPH~~~eslPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~kt~e~ 80 (247)
||+|++++|||+||||||+++|||||++||||+|+||+|++||++||+||+|+||||||||++||||||||||||+|||+
T Consensus 19 ~l~kk~~~fa~rpspGPHkl~eslPL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~MDVIsI~kt~e~ 98 (265)
T 3iz6_D 19 MLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGEN 98 (265)
T ss_dssp ------------------------CHHHHHHHHHTTSSCSSSTHHHHHTTCCEETTEECCCTTCCCCTTCEEECCSSCCE
T ss_pred ccccccceeccCCCCCCCcchhheeeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccCCCCCcEEEEEEEcCCCCE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCceEEEEcChhhhcceeEEEeeeEEeeCCceEEEccCceeEecCCCCccCCCeEEEecCCCceeeEEEeeCC
Q 025838 81 FRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVG 160 (247)
Q Consensus 81 yRvl~d~kgrf~l~~I~~eEa~~KLcKV~~k~~~~gg~~ql~~hDGrni~~~d~~ik~~Dtv~i~l~~~kI~d~ikfe~G 160 (247)
|||+||++|||.+|+|++|||+||||||++|++++||+|||+|||||||+||||.||+||||+||||++||+|||||++|
T Consensus 99 fRll~D~kGrf~l~~I~~eEA~~KLcKV~~k~~~~~G~pql~tHDGrti~~~dp~ik~~DTv~idl~~~kI~d~ikfe~G 178 (265)
T 3iz6_D 99 YRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVG 178 (265)
T ss_dssp EEEEECTTSCEEEEEECHHHHTCEEEEEEEEECCSSSCCEEEETTSCCCBSCSSCCCTTCEEEECSSSCCEEEEECCSTT
T ss_pred EEEEECCCCcEEEEECChHHcceEEEEEEEEEEccCCceEEEeecceEEecCCCCcccCCEEEEECCCCceeeEEEccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCCCCeEeEeeceEEEEccCCCceEeCCCCCceeeehHHHHHHHHHH
Q 025838 161 NVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRQAL 240 (247)
Q Consensus 161 ~~~~vtgG~n~G~vG~I~~i~~~~~s~~~V~v~d~~g~~F~T~~~~vfvIG~~~kp~islp~~~gi~~~~~~~~~~~~~~ 240 (247)
|+||||||+|+|++|+|++|++|+|||++|||+|++|++|+|+++||||||++++||||||++||||||++|||++|+++
T Consensus 179 nl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd~~g~~F~T~~~nvfvIGk~~kp~IsLp~~kg~~~~~~eer~~~~~~ 258 (265)
T 3iz6_D 179 NVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQRKRDAA 258 (265)
T ss_dssp CEEEECSSSSCSCEEEEEEEECCSSSCCEEEECCCSSCCEEEEGGGEEEEECSSCCCCCCCCCC----------------
T ss_pred CEEEEEcCCcceEEEEEEEEEEecCCCcEEEEEECCCCeEEEEeCeEEEEccCCCeeEeCCCCCceeeehHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred Hhhhh
Q 025838 241 ATSAA 245 (247)
Q Consensus 241 ~~~~~ 245 (247)
+++++
T Consensus 259 ~~~~~ 263 (265)
T 3iz6_D 259 AQAAA 263 (265)
T ss_dssp -----
T ss_pred hhhhc
Confidence 99875
No 2
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=100.00 E-value=1.3e-111 Score=761.15 Aligned_cols=242 Identities=66% Similarity=1.085 Sum_probs=239.3
Q ss_pred CCcccCceeccCCCCCCCCCcccchHHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeeEEeccCCce
Q 025838 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNEN 80 (247)
Q Consensus 1 ml~K~~~~~a~kpspGPH~~~eslPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~kt~e~ 80 (247)
||+|++++|||+||||||+++|||||++||||+|+||+|++||++||+||+|+||||||||++||||||||||||+|||+
T Consensus 19 ~l~kk~~~fa~rps~GPH~l~eslPL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~MDVIsI~kt~e~ 98 (261)
T 3u5c_E 19 LLDKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDTTYPAGFMDVITLDATNEN 98 (261)
T ss_dssp CCCSSSSSBCCCCCSSSSCGGGEEEHHHHHHHTTCCCSSSHHHHHHHTTTCEEETTBCCCCTTCEEETTCEEEETTTTEE
T ss_pred ccccccceeccCCCCCCCcchhheeeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccCCCCCceEEEEEEcCCCCE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCceEEEEcChhhhcceeEEEeeeEEeeCCceEEEccCceeEecCCCCccCCCeEEEecCCCceeeEEEeeCC
Q 025838 81 FRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVG 160 (247)
Q Consensus 81 yRvl~d~kgrf~l~~I~~eEa~~KLcKV~~k~~~~gg~~ql~~hDGrni~~~d~~ik~~Dtv~i~l~~~kI~d~ikfe~G 160 (247)
|||+||++|||.+|+|++|||+||||||++|++++||+|||+|||||||+||||.||+||||+||||+|||+|||||++|
T Consensus 99 fRll~D~kGrf~l~~I~~eEA~~KLcKV~~k~~~~~G~pql~tHDGrti~~~dp~ik~~Dtv~idl~~~kI~d~ikfe~G 178 (261)
T 3u5c_E 99 FRLVYDVKGRFAVHRITDEEASYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPNIKVNDTVKIDLASGKITDFIKFDAG 178 (261)
T ss_dssp EECCBCSSSCBCCEECCTTGGGCEECCEEEEEECGGGCEEEEETTTEEEESCCSSCCTTCEEEECSSSSCEEEEECCCSS
T ss_pred EEEEECCCCcEEEEECChHHcceEEEEEEEEEEecCCceEEEEecceEEecCCCCcccCCEEEEECCCCceeeEEEccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCCCCeEeEeeceEEEEccCCCceEeCCCCCceeeehHHHHHHHHHH
Q 025838 161 NVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRQAL 240 (247)
Q Consensus 161 ~~~~vtgG~n~G~vG~I~~i~~~~~s~~~V~v~d~~g~~F~T~~~~vfvIG~~~kp~islp~~~gi~~~~~~~~~~~~~~ 240 (247)
|+||||||+|+|++|+|++|++|+|||++|||+|++|++|+|+++||||||++++||||||++||||||++|||++|+++
T Consensus 179 nl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd~~g~~F~T~~~nvfvIGk~~kp~IsLp~~kg~~~~~~eer~~~~~~ 258 (261)
T 3u5c_E 179 KLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIKDSLDNTFVTRLNNVFVIGEQGKPYISLPKGKGIKLSIAEERDRRRAQ 258 (261)
T ss_dssp CCEEECSSTTTTCBCCCCEEECCTTSCCEEEEECTTSCEEEEEGGGEEECCSSSCCSSCCCTTTTCCCCHHHHHHHHTTT
T ss_pred CEEEEEcCCcceEEEEEEEEEEecCCCcEEEEEECCCCeEEEEeCeEEEEccCCCeeEeCCCCCceeeehHHhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999999999977
Q ss_pred Hh
Q 025838 241 AT 242 (247)
Q Consensus 241 ~~ 242 (247)
+.
T Consensus 259 ~~ 260 (261)
T 3u5c_E 259 QG 260 (261)
T ss_dssp TC
T ss_pred cc
Confidence 53
No 3
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=100.00 E-value=3.6e-109 Score=744.86 Aligned_cols=239 Identities=54% Similarity=0.945 Sum_probs=236.5
Q ss_pred CCcccCceeccCCCCCCCCCcccchHHHHHHhhhcccccHHHHHHHHhC--ceEEECCEEeccccCCCcceeeEEeccCC
Q 025838 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQ--RHVLVDAKVRTDKTYPAGFMDVVSIPKTN 78 (247)
Q Consensus 1 ml~K~~~~~a~kpspGPH~~~eslPL~i~LRd~LkyA~t~rEak~Il~~--~~V~VDGkvr~D~k~PvG~MDVIsI~kt~ 78 (247)
||+|++++||||||||||+++|||||++||||+|+||+|++||++||+| |+|+||||||+|++||||||||||||+||
T Consensus 19 ~l~kk~~~~a~rpspGPH~~~eslPL~i~LRd~LkyA~t~rEak~Il~q~~~~VkVDGkvr~D~~~PvG~MDVIsI~kt~ 98 (260)
T 2xzm_W 19 MLNKLGGIWATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVVRIEKTD 98 (260)
T ss_dssp TCCSSSCSBCCCCCSSSSCSSSCEEHHHHHTTTTCSCCSHHHHHHHTTSTTCCEEETTEECCCTTCEECTTCEEEEGGGT
T ss_pred eeccccceEccCCCCCCCccceeehhHhhhhhhhccccchhHHHHHHhccCCeEEECCEEeccCCCCCcEEEEEeEcCCC
Confidence 7999999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred ceEEEEEcCCCceEEEEcChhhhcceeEEEeeeEEeeCCceEEEccCceeEecCCCCccCCCeEEEecCCCceeeEEEee
Q 025838 79 ENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFD 158 (247)
Q Consensus 79 e~yRvl~d~kgrf~l~~I~~eEa~~KLcKV~~k~~~~gg~~ql~~hDGrni~~~d~~ik~~Dtv~i~l~~~kI~d~ikfe 158 (247)
|+|||+||++|||.+|+|++|||+||||||++|++++||+|||+|||||||+|+||.||+||||+||||+|||+|||||+
T Consensus 99 e~fRll~D~kGrf~l~~I~~eEA~~KLcKV~~k~~~k~G~~ql~~HDGrti~~~d~~ik~~Dtv~idl~~~kI~d~ikfe 178 (260)
T 2xzm_W 99 QSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPEIKIGDTLKYDLVNNKIENFAHLE 178 (260)
T ss_dssp EEEEEEECSSSCEEEEECCTTGGGEEEEEEEEEEEETTTEEEEEETTTEEEESCCSSCCTTBEEEEETTTTEEECCCBCC
T ss_pred CEEEEEEcCCccEEEEEcChHHcccEEEEEEEEEEccCCceEEEecCCceEeccCCcCccCCeEEEeCCCCceeeEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCCCCeEeEeeceEEEEccCCCceEeCCCCCceeeehHHHHHHHH
Q 025838 159 VGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRQ 238 (247)
Q Consensus 159 ~G~~~~vtgG~n~G~vG~I~~i~~~~~s~~~V~v~d~~g~~F~T~~~~vfvIG~~~kp~islp~~~gi~~~~~~~~~~~~ 238 (247)
+||+||||||+|+||+|+|+++++|+||+|+|||+|++|++|+|+++||||||++++||||||++||||||++|||++|+
T Consensus 179 ~G~l~mvtgG~n~GriG~I~~~e~~~gs~~iV~vkd~~g~~F~T~~~~vfvIG~~~kp~Islp~~kgi~l~i~eer~~~~ 258 (260)
T 2xzm_W 179 SGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQGKKSWIELPSGDGVRETILEERKRKF 258 (260)
T ss_dssp SSCEEEECSSTTTTCEEEEEEEECCCSSCCEEEEECTTCCCEEEEGGGEEEEESTTCCSSCCSSSSSCCCCHHHHHHHHT
T ss_pred CCCEEEEECCccceeEEEEEEEEecCCCCcEEEEEeCCCCeEEEEEeeEEEECCCCceeEecCCCCCeecchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999867999999999999999999999987
Q ss_pred H
Q 025838 239 A 239 (247)
Q Consensus 239 ~ 239 (247)
+
T Consensus 259 ~ 259 (260)
T 2xzm_W 259 S 259 (260)
T ss_dssp C
T ss_pred c
Confidence 4
No 4
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2.5e-99 Score=676.34 Aligned_cols=220 Identities=33% Similarity=0.522 Sum_probs=218.3
Q ss_pred CCcccCceeccCCCCCCCCCcccchHHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeeEEeccCCce
Q 025838 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNEN 80 (247)
Q Consensus 1 ml~K~~~~~a~kpspGPH~~~eslPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~kt~e~ 80 (247)
||+|++++||||||||||+++|||||++||||+||||+|.|||++||+||+|+||||+|+|++|||||||||||++++|+
T Consensus 20 ~l~kk~~~~a~rps~GPH~~~~~lPL~i~LRdrLgyA~t~rEar~Iv~~~~I~VdGKvr~d~~ypvG~mDVIsI~kt~e~ 99 (243)
T 3j20_E 20 YIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEH 99 (243)
T ss_dssp CCCTTSSSCBCCCCSCSSCSTTCEEHHHHHHTTSCCCSSHHHHHHHHHHCSCEETTEECCCSSCEECTTCEEEETTTTEE
T ss_pred ccccccceeccCCCCCCCccccceeehhhhhhhhccccCHHHHHHHHHCCcEEECCEEeccccCCcccceEEEecccCce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCceEEEEcChhhhcceeEEEeeeEEeeCCceEEEccCceeEecC---CCCccCCCeEEEecCCCceeeEEEe
Q 025838 81 FRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYP---DPLIKANDTIKLDLETNKITEFIKF 157 (247)
Q Consensus 81 yRvl~d~kgrf~l~~I~~eEa~~KLcKV~~k~~~~gg~~ql~~hDGrni~~~---d~~ik~~Dtv~i~l~~~kI~d~ikf 157 (247)
||++||++|||.+|+|++|||+||||||++|++++||+|||+|||||||+|| ||.||+||||+||||+|||+|||||
T Consensus 100 fr~i~d~kGr~~~~~I~~eea~~KLcKV~~k~~~~~G~~~l~~hDgr~i~~p~~~d~~ik~~Dtv~idl~~~kI~d~ikf 179 (243)
T 3j20_E 100 YRVLPNRIGKLILHPISEDEAFIKPLRIRNKRMIKGARVQLNFHDGTNHIVSIAEKDNYFTSYTVLMKVPEREILEVLPF 179 (243)
T ss_dssp EEEEECSSSCEEEEEECTTTTTEEEECCSCEEEETTTEEEECCSSCCCEECSSSSCSSCSSCEEEEEETTTTEEEEEEEC
T ss_pred eEEEecCCCceEEEEeChhhccceEEEEeeeEEccCCeeEEEecCCceEEcccccCCCcccCCEEEEECCCCCeeeEEec
Confidence 9999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred eCCcEEEEECCCcceeEEEEEeEEEecCC-ccEEEEEcCCCCeEeEeeceEEEEccCCCceEeCC
Q 025838 158 DVGNVVMVTGGRNRGRVGIIKNREKHKGS-FETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLP 221 (247)
Q Consensus 158 e~G~~~~vtgG~n~G~vG~I~~i~~~~~s-~~~V~v~d~~g~~F~T~~~~vfvIG~~~kp~islp 221 (247)
++||+||||||+|+|++|+|++|++|+|| ||+|||+|++|++|+|+++||||||+ ++||||||
T Consensus 180 ~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~~V~v~d~~g~~F~T~~~~vfvIGk-~kp~islp 243 (243)
T 3j20_E 180 EKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIEDEEGELFDTLKEYAFVVGT-DKPKISLP 243 (243)
T ss_dssp CTTCEEEECSSSSTTCEEEEEECCCCCSSSCCEEEEEESSCCCEEEETTTEEEEES-SCSCCSCC
T ss_pred cCCCEEEEECCccceEEEEEEEEEEecCCCceEEEEEcCCCCEEEEEeceEEEECC-CCccccCC
Confidence 99999999999999999999999999988 99999999999999999999999998 99999998
No 5
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=100.00 E-value=1.9e-86 Score=583.39 Aligned_cols=203 Identities=33% Similarity=0.474 Sum_probs=189.9
Q ss_pred CCCCcccchHHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeeEEeccCCceEEEEEcCCCceEEEEc
Q 025838 17 PHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSI 96 (247)
Q Consensus 17 PH~~~eslPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~kt~e~yRvl~d~kgrf~l~~I 96 (247)
.|+++|||||++||||+||||+|.||||+||+||+|+||||+|+|++||||||||||| ++|+||++||++|||.+|+|
T Consensus 1 ~Hkl~eslPL~i~LRdrLgyA~t~rEarkIv~~~~I~VDGKvr~d~~ypvG~mDVIsI--t~e~fRli~d~kGrf~~~~I 78 (213)
T 3kbg_A 1 MHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI--NGESYRVVYNDQGALVLMKE 78 (213)
T ss_dssp ---CCSCEEHHHHHHHHHHTTTCGGGHHHHHHTTCEEETTEECCCTTCEECTTCEEEE--TTEEEEEEECTTSCEEEEEC
T ss_pred CCcchhceeeHHHHhhhhcccccHHHHHHHHHCCCEEECCEEecccCCCccceeEEEe--cCceeEEEecCCCcEEEEEe
Confidence 3999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred ChhhhcceeEEEeeeEEeeCCceEEEccCceeEecCCCCccCCCeEEEecCCCceeeEEEeeCCcEEEEECCCcceeEEE
Q 025838 97 RDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGI 176 (247)
Q Consensus 97 ~~eEa~~KLcKV~~k~~~~gg~~ql~~hDGrni~~~d~~ik~~Dtv~i~l~~~kI~d~ikfe~G~~~~vtgG~n~G~vG~ 176 (247)
++|||+||||||++|++++||+|||+|||||||+||||.||+||||++|||+|||+|||||++||+||||||+|+||+|+
T Consensus 79 ~~eea~~KLcKV~~k~~~~~G~~~l~~HDGrti~~pd~~ik~~Dtv~idl~~~kI~d~ikf~~G~l~mvtgG~n~GriG~ 158 (213)
T 3kbg_A 79 TKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSIKVGDVLAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGT 158 (213)
T ss_dssp CTTGGGEEEEEEEEEEEEGGGEEEEEETTSCEEEECCTTCCTTCEEEEETTTCCEEEEECCSTTCEEEECSSTTTTCEEE
T ss_pred ChhHccceEEEEEEEEEecCCeeEEEecCccEEEcCCCCcccCCEEEEECCCCceeeEEEcCCCCEEEEECCCcceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeEEEecCC-ccEEEEEcCCCCeEeEeeceEEEEccCCCceEeCCCCCce
Q 025838 177 IKNREKHKGS-FETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGI 226 (247)
Q Consensus 177 I~~i~~~~~s-~~~V~v~d~~g~~F~T~~~~vfvIG~~~kp~islp~~~gi 226 (247)
|++|++++|| +|+||++ ++|+|+++||||||+ ++|||.+|.+.=+
T Consensus 159 I~~ie~~~gs~~~iV~v~----~~F~T~~~~vfvIGk-~~p~i~~~p~~~~ 204 (213)
T 3kbg_A 159 ISKIEAKEGSSANLVHFQ----EGFSTIKDHVFMIGS-SKFSFVLSPEEVI 204 (213)
T ss_dssp EEEECCCSCC--CEEEET----TTEEEEGGGEEEEEC-SSCBCC-------
T ss_pred EEEEEEccCCCCCEEEEE----EEEEeeeceEEEEcC-CCccEEeChHHcc
Confidence 9999999999 5999997 679999999999998 7999977666444
No 6
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=97.38 E-value=0.00012 Score=53.76 Aligned_cols=57 Identities=18% Similarity=0.165 Sum_probs=48.3
Q ss_pred chHHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeeEEeccCCceEEE
Q 025838 24 LPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRL 83 (247)
Q Consensus 24 lPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~kt~e~yRv 83 (247)
+.|--+|.+. +++.+.+||++.+.+|.|+|||++.++..+.+---|+|++. ++.+.+
T Consensus 21 ~RLdk~L~~~-g~~~SR~~a~~lI~~G~V~VNG~~v~~~~~~v~~gd~I~v~--~~~~~~ 77 (79)
T 1p9k_A 21 VELCDLLKLE-GWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA--GHSVQV 77 (79)
T ss_dssp CCHHHHHHHH-TSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEEEET--TEEEEE
T ss_pred chHHHHHHHC-CCCCCHHHHHHHHHCCEEEECCEEecCCCCCCCCCCEEEEC--CEEEEE
Confidence 6788888875 89889999999999999999999999988888777999994 454443
No 7
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.86 E-value=0.00056 Score=49.92 Aligned_cols=43 Identities=28% Similarity=0.311 Sum_probs=38.6
Q ss_pred hcccccHHHHHHHHhCceEEECCEEeccccCCCcc--eeeEEecc
Q 025838 34 LKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGF--MDVVSIPK 76 (247)
Q Consensus 34 LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~--MDVIsI~k 76 (247)
+++|.|.++|++.+++|.|.|||++++.+-|.|-. -|.|++..
T Consensus 17 ~gla~SR~~A~~lI~~G~V~Vng~~v~kps~~V~~~~~d~I~~~~ 61 (71)
T 2cqj_A 17 LRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVD 61 (71)
T ss_dssp TTCSSSHHHHHHHHHTTCEEETTBCCCCTTCEEEHHHHTTEEESC
T ss_pred hCCcCCHHHHHHHHHCCcEEECCEEECCCCCCCCCCCCcEEEEEC
Confidence 79999999999999999999999999999999876 67887543
No 8
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.26 E-value=0.0021 Score=55.06 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=40.5
Q ss_pred hcccccHHHHHHHHhCceEEECCEEeccccCCCcce--eeEEeccC
Q 025838 34 LKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFM--DVVSIPKT 77 (247)
Q Consensus 34 LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~M--DVIsI~kt 77 (247)
+++|.|.++|++.+.+|.|.|||.+++++.|.|-.- |+|++...
T Consensus 112 ~G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~~eD~I~v~~~ 157 (180)
T 3j20_D 112 KGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYART 157 (180)
T ss_dssp HTSSSSHHHHHHHHHHTCCEESSSBCCCSSCCCCTGGGGCEECSSC
T ss_pred CcccCcHHHHHHHHHcCCeEECCEEeCCCCcccCCCCCCEEEEeCC
Confidence 589999999999999999999999999999999886 99999543
No 9
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=96.02 E-value=0.0069 Score=50.27 Aligned_cols=50 Identities=20% Similarity=0.233 Sum_probs=41.7
Q ss_pred HHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeeEEecc
Q 025838 26 LILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPK 76 (247)
Q Consensus 26 L~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~k 76 (247)
|--+|.. +++|.+.++|++.+++|.|.|||++++++.|.+---|+|++..
T Consensus 53 LD~~L~~-~g~~~SR~~ar~lI~~G~V~VNG~~v~~ps~~V~~gD~I~V~~ 102 (159)
T 1c05_A 53 LDNLVYR-LGLARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTIAVRE 102 (159)
T ss_dssp HHHHHHH-TTSCSSHHHHHHHHHTTCEEETTEECCCSSCBCCTTCEEEECG
T ss_pred HHHHHHH-cCCcCCHHHHHHHHHCCCEEECCEEeCcCCcEeCCCCEEEEeC
Confidence 3334443 4688999999999999999999999999999887779999954
No 10
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=95.99 E-value=0.0073 Score=52.38 Aligned_cols=43 Identities=21% Similarity=0.277 Sum_probs=39.5
Q ss_pred hcccccHHHHHHHHhCceEEECCEEeccccCCCcceeeEEecc
Q 025838 34 LKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPK 76 (247)
Q Consensus 34 LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~k 76 (247)
+++|.|..+|++.+.+|.|.|||++++++.|.|---|+|++..
T Consensus 98 ~g~a~SR~~ArqLI~~G~V~VNG~~V~~pS~~V~~gD~I~V~~ 140 (201)
T 3bbn_D 98 LGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDTIMARD 140 (201)
T ss_dssp TTSSSSSHHHHHHHHTTCEEETTEECCCTTCBCCTTEEEEECS
T ss_pred cCCcCCHHHHHHHHhCCcEEeCCEEEeecceecCCCCEEEEcc
Confidence 4678899999999999999999999999999998889999964
No 11
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=95.41 E-value=0.015 Score=50.33 Aligned_cols=43 Identities=16% Similarity=0.301 Sum_probs=39.1
Q ss_pred hcccccHHHHHHHHhCceEEECCEEeccccCCCcceeeEEecc
Q 025838 34 LKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPK 76 (247)
Q Consensus 34 LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~k 76 (247)
+++|.+.++|++++.+|.|+|||++++++.|.+---|+|++..
T Consensus 108 ~g~~~SR~~arqLI~~G~V~VNG~~v~~ps~~V~~gD~I~V~~ 150 (209)
T 2vqe_D 108 LGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAE 150 (209)
T ss_dssp TTSSSSHHHHHHHHHTTCEEETTEECCCTTCBCCTTCEEEECG
T ss_pred hcCcCCHHHHHHHHHCCCEEECCEEeCcCCcCcCCCCEEEEcC
Confidence 4678899999999999999999999998999887789999954
No 12
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Probab=95.39 E-value=0.0051 Score=53.41 Aligned_cols=44 Identities=16% Similarity=0.245 Sum_probs=39.4
Q ss_pred hcccccHHHHHHHHhCceEEECCEEeccccCCCcce--eeEEeccC
Q 025838 34 LKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFM--DVVSIPKT 77 (247)
Q Consensus 34 LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~M--DVIsI~kt 77 (247)
+++|.|..+|++.+.+|.|.|||++++++.|.|-.= |.|++..+
T Consensus 116 ~G~a~Sr~~ArqLI~~GhV~VNG~~V~~Ps~~V~~g~ed~I~~~~~ 161 (197)
T 3u5c_J 116 LGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPT 161 (197)
T ss_dssp SSTTSSHHHHHHHHHTSCCBSSSCBCCCTTCCCCSTTGGGCBCCSS
T ss_pred ccccCCHHHHHHHHHcCCEEECCEEeCCCccccCCCCccEEEEcCC
Confidence 689999999999999999999999999999988774 67887653
No 13
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D
Probab=95.22 E-value=0.009 Score=50.99 Aligned_cols=42 Identities=14% Similarity=0.194 Sum_probs=37.3
Q ss_pred hcccccHHHHHHHHhCceEEECCEEeccccCCCccee--eEEec
Q 025838 34 LKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD--VVSIP 75 (247)
Q Consensus 34 LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MD--VIsI~ 75 (247)
+++|.|.++|+..+.+|.|.|||++++++.|.|---| .|++.
T Consensus 116 ~G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~d~~~I~v~ 159 (181)
T 2xzm_D 116 LNLANSIHHSRVLIRQRHIKVGKNLVNVPSFMVRTDSEKSIDFA 159 (181)
T ss_dssp TTCSSSTTHHHHHTTTTCCEETTEECCCSCCBCCSTTSSCEECT
T ss_pred ccccCCHHHHHHHHHCCEEEECCEEECCCCcCCCCCCceEEEEe
Confidence 6999999999999999999999999999999986554 67763
No 14
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=95.14 E-value=0.032 Score=47.97 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=43.1
Q ss_pred ccchHHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeeEEec
Q 025838 22 ECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIP 75 (247)
Q Consensus 22 eslPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~ 75 (247)
+++-|--||.... ..+.++|++++.+|.|+|||+++++..+++---|+|++.
T Consensus 2 ~~~RLd~~L~~~~--~~SR~~~~~li~~G~V~VNG~~v~~~~~~v~~gD~I~v~ 53 (234)
T 1ksk_A 2 SHMRLDKFIAQQL--GVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYD 53 (234)
T ss_dssp CCEEHHHHHHHHH--TCCHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEET
T ss_pred CcccHHHHHHHcC--CCCHHHHHHHHHcCeEEECCEEeCCCCCCCCCCCEEEEe
Confidence 3566777888763 678899999999999999999998777777666999985
No 15
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=95.10 E-value=0.057 Score=43.46 Aligned_cols=60 Identities=8% Similarity=0.009 Sum_probs=47.6
Q ss_pred cccchHHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeeEEeccCCceEE
Q 025838 21 RECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFR 82 (247)
Q Consensus 21 ~eslPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~kt~e~yR 82 (247)
.+++-|--||... .+..+...|++++.+|.|.|||++. ...+.|-.-|+|+|...++.|.
T Consensus 6 ~~~~RLDk~L~~~-~~~~SRs~a~~li~~G~V~VNG~~v-k~s~~V~~GD~I~I~~~~~~~~ 65 (133)
T 1dm9_A 6 AVEVRLDKWLWAA-RFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDERT 65 (133)
T ss_dssp TTCCBHHHHHHHT-TSSSSHHHHHHHHHTTCEEETTEEC-CTTCBCCTTCEEEEEETTEEEE
T ss_pred ccchhHHHHHHHC-CCCCCHHHHHHHHHCCcEEECCEEc-CCCCEeCCCCEEEEEeCCceee
Confidence 3467788888764 2345899999999999999999987 7888887779999976555543
No 16
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=94.90 E-value=0.0094 Score=51.90 Aligned_cols=43 Identities=23% Similarity=0.370 Sum_probs=39.2
Q ss_pred hcccccHHHHHHHHhCceEEECCEEeccccCCCcceeeEEecc
Q 025838 34 LKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPK 76 (247)
Q Consensus 34 LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~k 76 (247)
+++|.|.++|++++.+|.|.|||++++++.|.+--=|+|++..
T Consensus 104 ~g~~~SR~~ArqLI~~G~V~VNG~~V~~ps~~Vk~GD~I~V~~ 146 (205)
T 3r8n_D 104 MGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIRE 146 (205)
T ss_dssp TSSCSSHHHHHHHHHTTCCBSSSSBCCCTTCBCCTTBCCBCCS
T ss_pred hcchhHHHHHHHHHHCCCEEECCEEEccCCcCcCCCCEEEecC
Confidence 5788999999999999999999999998888887779999965
No 17
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=94.83 E-value=0.049 Score=40.01 Aligned_cols=46 Identities=30% Similarity=0.422 Sum_probs=35.8
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCCCCeEeEeece
Q 025838 157 FDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGN 206 (247)
Q Consensus 157 fe~G~~~~vtgG~n~G~vG~I~~i~~~~~s~~~V~v~d~~g~~F~T~~~~ 206 (247)
|++|+.+-|++|+|.|.+|.|..++.. -++.+-|...+++.-...+
T Consensus 18 F~~GDHVkVi~G~~~getGlVV~v~~d----~v~v~SD~t~~Ei~V~~~d 63 (69)
T 2do3_A 18 FKMGDHVKVIAGRFEGDTGLIVRVEEN----FVILFSDLTMHELKVLPRD 63 (69)
T ss_dssp CCTTCEEEESSSTTTTCEEEEEEECSS----CEEEEESSSCSEEEECTTS
T ss_pred ccCCCeEEEeccEEcCceEEEEEEeCC----EEEEEeCCCCCEEEEEhHH
Confidence 789999999999999999999998631 2455677777777655444
No 18
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=94.51 E-value=0.042 Score=47.64 Aligned_cols=65 Identities=15% Similarity=0.231 Sum_probs=49.5
Q ss_pred cchHHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeeEEecc-----CCce-EEEEEcCCC
Q 025838 23 CLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPK-----TNEN-FRLLYDTKG 89 (247)
Q Consensus 23 slPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~k-----t~e~-yRvl~d~kg 89 (247)
++-|--||.... ..+.++|++.+.+|.|+|||+++++..+++---|+|+++. .+++ |-++.-+.|
T Consensus 2 ~~RLd~~L~~~~--~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~~~i~~ed~~~~lvvnKP~G 72 (243)
T 1vio_A 2 SLRLDKFIAENV--GLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFEDELLTWIEEGQYFMLNKPQG 72 (243)
T ss_dssp CEEHHHHHHHHH--TCCHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEETTEECCSSCCCCEEEEEECTT
T ss_pred CccHHHHHHHcC--CCCHHHHHHHHHcCcEEECCEEeCCCCCCcCCCCEEEEeccccccCCCCEEEEEECCCC
Confidence 345777888763 6789999999999999999999988888887778998853 2344 555555555
No 19
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=94.13 E-value=0.11 Score=41.80 Aligned_cols=41 Identities=22% Similarity=0.477 Sum_probs=32.2
Q ss_pred CCeEEEecCCCceeeEEEeeCCcEEEEECCCcceeEEEEEeEEE
Q 025838 139 NDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREK 182 (247)
Q Consensus 139 ~Dtv~i~l~~~kI~d~ikfe~G~~~~vtgG~n~G~vG~I~~i~~ 182 (247)
++.+ .+....+-..+| ..|+.+||..|.|.|.+|++.++..
T Consensus 56 g~~v--~v~q~~LETViP-~~g~~V~Iv~G~~rG~~g~L~~id~ 96 (127)
T 2ckk_A 56 GDKL--KLDQTHLETVIP-APGKRILVLNGGYRGNEGTLESINE 96 (127)
T ss_dssp CCEE--EEEGGGEEECCC-CTTCEEEECSSTTTTCEEEEEEEEG
T ss_pred CCEE--EEchHHcEEecC-CCCCEEEEEecccCCcEEEEEEEeC
Confidence 4544 444445556667 8999999999999999999999853
No 20
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=93.86 E-value=0.09 Score=47.42 Aligned_cols=67 Identities=16% Similarity=0.093 Sum_probs=53.4
Q ss_pred ccchHHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeeEEecc--------CCceEEEEEcCCCce
Q 025838 22 ECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPK--------TNENFRLLYDTKGRF 91 (247)
Q Consensus 22 eslPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~k--------t~e~yRvl~d~kgrf 91 (247)
+++-|--||.+. +++ +.++|++.+.+|.|+|||+++ +..+.+---|+|++.. .+++|-++.-+.|-.
T Consensus 5 ~g~RLdk~La~~-g~~-SR~~a~~lI~~G~V~VNG~~v-~~~~~V~~gD~I~v~~~~i~~~~~ed~~~lvvnKP~G~~ 79 (290)
T 3dh3_A 5 SSVRLNKYISES-GIC-SRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPREAEDLVLIALNKPVGIV 79 (290)
T ss_dssp CCEEHHHHHHTT-TSS-CHHHHHHHHHTTCEEETTEEC-CTTCEECTTCCEEETTEEECCCCGGGCCEEEEEECTTCB
T ss_pred cchHHHHHHHhC-CCC-CHHHHHHHHHCCCEEECCEEc-cCCcCcCCCCEEEeccccccccccccceEEEEECCCccc
Confidence 467788899886 555 899999999999999999998 7888776669999853 245677777777743
No 21
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=93.82 E-value=0.017 Score=42.95 Aligned_cols=53 Identities=8% Similarity=-0.069 Sum_probs=38.3
Q ss_pred HHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeeEEeccCCceE
Q 025838 27 ILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENF 81 (247)
Q Consensus 27 ~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~kt~e~y 81 (247)
--||.. ++++.+...|++++.+|.|+|||+++ +..|.+---|+|+|.-.++.+
T Consensus 4 D~~L~~-~~~~~sR~~~~~li~~G~V~VNg~~~-~~~~~v~~gd~I~v~~~~~~~ 56 (92)
T 2k6p_A 4 DKFLQS-VGLVKRRVLATDMCNVGAVWLNGSCA-KASKEVKAGDTISLHYLKGIE 56 (92)
T ss_dssp HHHSTT-TTSCCCCCSSCCHHHHTCCEETTEEC-CTTCBCCTTCEEEECCSSCCE
T ss_pred HHHHHH-CCCCCCHHHHHHHHHCCcEEECCEEc-CCCCCcCCCCEEEEEeCCceE
Confidence 345554 24444555699999999999999997 677887666999996544443
No 22
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=92.05 E-value=0.058 Score=48.74 Aligned_cols=73 Identities=14% Similarity=0.122 Sum_probs=8.3
Q ss_pred ccchHHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeeEEeccC----------CceEEEEEcCCCce
Q 025838 22 ECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKT----------NENFRLLYDTKGRF 91 (247)
Q Consensus 22 eslPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~kt----------~e~yRvl~d~kgrf 91 (247)
.++.|--+|...+ ...+.++|++++.+|.|+|||+++++..+++---|+|++... .-.+.++|.....+
T Consensus 15 ~g~RLd~~L~~~~-~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~~~~~~~~~~~~~~~~~ilyed~~~l 93 (325)
T 1v9f_A 15 LGQRLDQALAEMF-PDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDII 93 (325)
T ss_dssp --------------------------------------------------------------CCCCCCCCCEEEECSSEE
T ss_pred CCchHHHHHHhhc-cccCHHHHHHHHHCCCEEECCEEccCCCCEeCCCCEEEEeccccccccCCcccCCCeEEEECCCEE
Confidence 4566777777654 246789999999999999999997888888877799998521 11245666555445
Q ss_pred EEEE
Q 025838 92 RLHS 95 (247)
Q Consensus 92 ~l~~ 95 (247)
++++
T Consensus 94 vvnK 97 (325)
T 1v9f_A 94 IINK 97 (325)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 4444
No 23
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=91.98 E-value=0.0048 Score=53.47 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=38.9
Q ss_pred hcccccHHHHHHHHhCceEEECCEEeccccCCCcceeeEEec
Q 025838 34 LKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIP 75 (247)
Q Consensus 34 LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~ 75 (247)
+++|.|.++|++.+.+|.|.|||++++++-|.|-.=|++.|.
T Consensus 118 ~G~a~SR~~ArqlI~~GhV~VNG~~V~~Ps~~V~~gde~~I~ 159 (195)
T 3iz6_C 118 AGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHID 159 (195)
T ss_dssp CCCHHHHSCTTSHHHHHSTTTSCCCCCCCCCCCSSSCSSSSC
T ss_pred ccccCCHHHHHHHHHcCCEEECCEEeCCCCcCcCCCCEEEEE
Confidence 589999999999999999999999999999999888887774
No 24
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=91.42 E-value=0.33 Score=46.18 Aligned_cols=44 Identities=14% Similarity=0.122 Sum_probs=38.0
Q ss_pred cchHHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCc
Q 025838 23 CLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAG 67 (247)
Q Consensus 23 slPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG 67 (247)
.++++=+|.. .++|.+..|||+.+.||-|+|||..++|..+-+.
T Consensus 368 ~~~~~~~l~~-~~l~~S~~earr~i~~ggv~vn~~~v~d~~~~~~ 411 (432)
T 1h3f_A 368 RIWVARLFTL-AGLTPSNAEARRLIQNRGLRLDGEVLTDPMLQVD 411 (432)
T ss_dssp EEEHHHHHHH-TTSSSSHHHHHHHHHTTCEEETTEECCCTTCEEE
T ss_pred cCcHHHHHHH-hCCcccHHHHHHHHHhCCEEECCEEecCccceec
Confidence 4567777764 6999999999999999999999999999987554
No 25
>2ktl_A Tyrosyl-tRNA synthetase; S4 fold, aminoacyl-tRNA synthetase, ligase; NMR {Aspergillus nidulans fgsc A4}
Probab=91.36 E-value=0.19 Score=42.36 Aligned_cols=75 Identities=19% Similarity=0.152 Sum_probs=53.1
Q ss_pred hHHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeeE-E----------ec---cCCceEEEEEcCCCc
Q 025838 25 PLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVV-S----------IP---KTNENFRLLYDTKGR 90 (247)
Q Consensus 25 PL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVI-s----------I~---kt~e~yRvl~d~kgr 90 (247)
+|+=+|- ..++|.+.+|||+.+.||-|+|||....|..-|.++||-= + +. -.+..|-+|---|.+
T Consensus 51 ~ivdlLv-~aGLa~SKsEARRlI~qGGv~VNg~kv~~~~~~~~i~~~~~~~tpi~d~~~~it~~dli~g~~liLRkGKK~ 129 (164)
T 2ktl_A 51 TFSKVLW-SAGLVASKSEGQRIINNNGAYVGSRPGVKKNEPGGGMPDDLTFTPIKTWNASKTQEFIIDGDLLILKLGKWK 129 (164)
T ss_dssp SHHHHHH-HHTSCSTHHHHHHHHHHTCEEEEECCSCCCCCCCSSSCSSSCCCCCCCCSHHHHHHHTTCSSCEEEEESSSC
T ss_pred cHHHHHH-HhCcccCHHHHHHHHHhCCEEECCEecccccccccccccccccccccccccccCHHHhcCCcEEEEEcCCee
Confidence 3444444 4699999999999999999999998888854477777641 1 11 135566777777777
Q ss_pred eEEEEcChhh
Q 025838 91 FRLHSIRDEE 100 (247)
Q Consensus 91 f~l~~I~~eE 100 (247)
|.+..+..+|
T Consensus 130 ~~lI~~~~de 139 (164)
T 2ktl_A 130 MKLVSIVSDE 139 (164)
T ss_dssp EEEEECCCHH
T ss_pred EEEEEEeccH
Confidence 7777765444
No 26
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=90.92 E-value=0.5 Score=45.02 Aligned_cols=66 Identities=9% Similarity=0.020 Sum_probs=47.6
Q ss_pred hHHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeeEEeccCCceEEEEEcCCCceEEEEc
Q 025838 25 PLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSI 96 (247)
Q Consensus 25 PL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~kt~e~yRvl~d~kgrf~l~~I 96 (247)
+++=+|.. .++|.+..|||+.+.||-|+|||..++|..+.+.--|.+ +..|-+|---|.+|.+..+
T Consensus 357 ~~~~ll~~-~gl~~S~~earr~i~~ggv~in~~~v~d~~~~~~~~~~~-----~~~~~~l~~GKk~~~~v~~ 422 (432)
T 2jan_A 357 GIVDLLVA-SGLSASKGAARRTIHEGGVSVNNIRVDNEEWVPQSSDFL-----HGRWLVLRRGKRSIAGVER 422 (432)
T ss_dssp SHHHHHHH-HTSCSSHHHHHHHHTTTCEEESSCEECCTTCCCCGGGSB-----TTTEEEEESSSSCEEEEEE
T ss_pred hHHHHHHH-hCCcccHHHHHHHHHhCCEEECCEEccChhcccChhhcc-----CCcEEEEEeCCeeEEEEEE
Confidence 56666664 799999999999999999999999999999877544332 1233445444555544443
No 27
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=90.40 E-value=0.16 Score=45.88 Aligned_cols=52 Identities=6% Similarity=-0.190 Sum_probs=42.6
Q ss_pred chHHHHHHhhhcccccHHHHHHHHhCceEEECC-E-EeccccCCCcceeeEEecc
Q 025838 24 LPLILILRNRLKYALTYREVIAILMQRHVLVDA-K-VRTDKTYPAGFMDVVSIPK 76 (247)
Q Consensus 24 lPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDG-k-vr~D~k~PvG~MDVIsI~k 76 (247)
+-|-.+|-. .+++.+..+|++.|++|.|.||| + +.+++.+.|---|.|++..
T Consensus 7 ~RLD~~L~~-~g~~~SR~~a~~lI~~G~V~Vng~~~~v~kp~~~V~~~d~I~v~g 60 (291)
T 3hp7_A 7 ERVDVLAYK-QGLFETREQAKRGVMAGLVVNVINGERYDKPGEKIDDGTELKLKG 60 (291)
T ss_dssp EEHHHHHHH-TTSSSSHHHHHHHHHTTCEEETTTCCBCCCTTCEEETTCCEEETT
T ss_pred hhHHHHHHH-cCCcccHHHHHHHHHCCeEEECCeEEEEccCCCCCCCCCEEEEcc
Confidence 345556644 47889999999999999999999 8 8888888777779999963
No 28
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=85.64 E-value=0.16 Score=48.17 Aligned_cols=48 Identities=10% Similarity=0.121 Sum_probs=0.0
Q ss_pred cchHHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceee
Q 025838 23 CLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDV 71 (247)
Q Consensus 23 slPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDV 71 (247)
.++|.=+|. ..++|.+..|||+.+.||-|+|||.+++|..+.+.--|.
T Consensus 352 ~i~l~~lL~-~agl~~SksEARRlI~~GgV~VNgekv~d~~~~l~~~dl 399 (420)
T 1jil_A 352 TTNIVEVLI-ETGISPSKRQAREDVNNGAIYINGERQQDVNYALAPEDK 399 (420)
T ss_dssp -------------------------------------------------
T ss_pred cccHHHHHH-HcCCccCHHHHHHHHHhCCEEECCEEecccccccCcccc
Confidence 356666666 479999999999999999999999999999876544443
No 29
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=81.70 E-value=1.8 Score=34.71 Aligned_cols=56 Identities=25% Similarity=0.338 Sum_probs=40.8
Q ss_pred eEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcC-----CCCeEe--EeeceEEEEc
Q 025838 153 EFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDA-----LGHEFA--TRLGNVFTIG 211 (247)
Q Consensus 153 d~ikfe~G~~~~vtgG~n~G~vG~I~~i~~~~~s~~~V~v~d~-----~g~~F~--T~~~~vfvIG 211 (247)
..+++..|+.++|+.|..-|..|+|..+.. ..+.|+|+.- +|.+++ -..+||+++-
T Consensus 39 r~~~IkkGD~V~Vi~G~dKGk~GkV~~V~~---k~~~V~VEgvn~kK~~Gg~~e~pIh~SNV~i~~ 101 (120)
T 1vq8_T 39 RNVRVNAGDTVEVLRGDFAGEEGEVINVDL---DKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTD 101 (120)
T ss_dssp SEEECCTTCEEEECSSTTTTCEEEEEEEET---TTTEEEETTCEEECSSSCEEECCBCGGGEEEEE
T ss_pred ccccccCCCEEEEEecCCCCCEEEEEEEEC---CCCEEEEeCeEeEcCCCCEEEeeechHHEEEEe
Confidence 457888999999999999999999999853 2356666654 344443 2356777665
No 30
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=81.05 E-value=2.2 Score=34.57 Aligned_cols=56 Identities=14% Similarity=0.243 Sum_probs=39.0
Q ss_pred eEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEc-----CCCCeEe--EeeceEEEEc
Q 025838 153 EFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD-----ALGHEFA--TRLGNVFTIG 211 (247)
Q Consensus 153 d~ikfe~G~~~~vtgG~n~G~vG~I~~i~~~~~s~~~V~v~d-----~~g~~F~--T~~~~vfvIG 211 (247)
-.++...|+.++|+.|+.-|..|+|..+.... +.|+|+. .+|.+.+ ...+||+++-
T Consensus 46 rs~~IkkgD~V~Vi~GkdKGk~GkV~~V~~kk---~~V~VEgVn~~K~~G~~~e~pIh~SNV~i~~ 108 (127)
T 3u5e_Y 46 KALPIRRDDEVLVVRGSKKGQEGKISSVYRLK---FAVQVDKVTKEKVNGASVPINLHPSKLVITK 108 (127)
T ss_dssp CEEECCTTCEEEECSSTTTTCEEEEEEEEGGG---TEEEEETCEEECSSSCEEECCBCGGGEEEEE
T ss_pred CcccccCCCEEEEeecCCCCccceEEEEECCC---CEEEEeCeEEECCCCcEEEcccchHHEEEEc
Confidence 35788889999999999999999999985432 3566554 4554333 3345665554
No 31
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=79.57 E-value=2.3 Score=34.12 Aligned_cols=56 Identities=21% Similarity=0.283 Sum_probs=38.2
Q ss_pred eEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEc-----CCCCeEe--EeeceEEEEc
Q 025838 153 EFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD-----ALGHEFA--TRLGNVFTIG 211 (247)
Q Consensus 153 d~ikfe~G~~~~vtgG~n~G~vG~I~~i~~~~~s~~~V~v~d-----~~g~~F~--T~~~~vfvIG 211 (247)
..+++..|+.++|+.|+.-|..|+|..+... .+.|+|+. .+|.+.+ ...+||+++-
T Consensus 42 r~~~IkkGD~V~Vi~GkdKGk~GkV~~V~~k---~~~V~VEgvn~~k~~G~~~e~pIh~SNV~l~~ 104 (121)
T 3j21_U 42 RNLPVRVGDKVRIMRGDYKGHEGKVVEVDLK---RYRIYVEGATLRKTNGTEVFYPIHPSNVMIIE 104 (121)
T ss_dssp SEEECCSSSEEEECSSSCSSEEEEEEEEETT---TTEEEETTCEEECSSSCEEECCBCGGGEEEEE
T ss_pred cccccccCCEEEEeecCCCCcEeEEEEEEec---CCEEEEeCeEEEecCCcEEEcccCHHHeEEEc
Confidence 3578889999999999999999999998542 24555543 4443222 2335665554
No 32
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=78.48 E-value=0.42 Score=45.32 Aligned_cols=44 Identities=14% Similarity=0.110 Sum_probs=0.0
Q ss_pred chHHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcc
Q 025838 24 LPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGF 68 (247)
Q Consensus 24 lPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~ 68 (247)
++++=+|.. .++|.+..|||+.+.||-|+|||..++|..+.+.-
T Consensus 352 ~~~~~~l~~-~gl~~S~~earr~i~~ggv~in~~~v~d~~~~~~~ 395 (419)
T 2ts1_A 352 VPLVELLVS-AGISPSKRQAREDIQNGAIYVNGERLQDVGAILTA 395 (419)
T ss_dssp ---------------------------------------------
T ss_pred ccHHHHHHH-hCCCCCHHHHHHHHHhCCEEECCEEecCcccccCh
Confidence 456666663 79999999999999999999999999999876643
No 33
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=76.71 E-value=5.9 Score=26.79 Aligned_cols=43 Identities=19% Similarity=0.331 Sum_probs=31.2
Q ss_pred EEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCCCCe
Q 025838 155 IKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHE 199 (247)
Q Consensus 155 ikfe~G~~~~vtgG~n~G~vG~I~~i~~~~~s~~~V~v~d~~g~~ 199 (247)
+.|++|+.+.|+.|.-.|..|+|.++..+. ..-.|.+. .-|.+
T Consensus 3 ~~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k-~~v~V~v~-~~Gr~ 45 (58)
T 1nz9_A 3 VAFREGDQVRVVSGPFADFTGTVTEINPER-GKVKVMVT-IFGRE 45 (58)
T ss_dssp CSCCTTCEEEECSGGGTTCEEEEEEEETTT-TEEEEEEE-SSSSE
T ss_pred cccCCCCEEEEeecCCCCcEEEEEEEcCCC-CEEEEEEE-eCCCE
Confidence 468899999999999999999999985321 22344443 44443
No 34
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=70.07 E-value=3.8 Score=31.80 Aligned_cols=34 Identities=24% Similarity=0.446 Sum_probs=26.7
Q ss_pred EeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEE
Q 025838 156 KFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQ 193 (247)
Q Consensus 156 kfe~G~~~~vtgG~n~G~vG~I~~i~~~~~s~~~V~v~ 193 (247)
++..|+.++|+.|+.-|..|+|.++... +.|+|+
T Consensus 3 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~----~~ViVe 36 (102)
T 3r8s_U 3 KIRRDDEVIVLTGKDKGKRGKVKNVLSS----GKVIVE 36 (102)
T ss_dssp SSCSSCEEEECSSSSTTCEEEEEEEETT----TEEEET
T ss_pred CccCCCEEEEeEcCCCCeeeEEEEEEeC----CEEEEe
Confidence 4567999999999999999999998542 445544
No 35
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=69.31 E-value=6 Score=32.31 Aligned_cols=56 Identities=13% Similarity=0.237 Sum_probs=37.9
Q ss_pred eEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEc-----CCCCeE--eEeeceEEEEc
Q 025838 153 EFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD-----ALGHEF--ATRLGNVFTIG 211 (247)
Q Consensus 153 d~ikfe~G~~~~vtgG~n~G~vG~I~~i~~~~~s~~~V~v~d-----~~g~~F--~T~~~~vfvIG 211 (247)
-.++...|+.++|+.|+.-|..|+|..+... .+.|+||. .+|.+. -...+||+++-
T Consensus 45 Rs~~IkkgD~V~Vi~GkdKGk~GkV~~V~~k---k~~V~VEgVn~~K~~G~~~e~pIh~SNV~i~~ 107 (135)
T 4a17_S 45 RSMPVRKDDEVLIVRGKFKGNKGKVTQVYRK---KWAIHVEKISKNKLNGAPYQIPLSASQLVLTK 107 (135)
T ss_dssp SEEECCTTCEEEECSSTTTTCEEEEEEEETT---TTEEEETTCCEEETTTEEECCCBCGGGEEEEE
T ss_pred CcccccCCCEEEEeecCCCCceeeEEEEEcC---CCEEEEeCeEEEcCCCCEEEcccchHHEEEEc
Confidence 3567888999999999999999999998532 24555543 445322 22345666554
No 36
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=68.77 E-value=5.1 Score=33.28 Aligned_cols=73 Identities=19% Similarity=0.228 Sum_probs=47.4
Q ss_pred eEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEc-----CCCCeEe--EeeceEEEEccCCCceEeCCCCCc
Q 025838 153 EFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD-----ALGHEFA--TRLGNVFTIGKGTKPWVSLPKGKG 225 (247)
Q Consensus 153 d~ikfe~G~~~~vtgG~n~G~vG~I~~i~~~~~s~~~V~v~d-----~~g~~F~--T~~~~vfvIG~~~kp~islp~~~g 225 (247)
-.+++..|+.++|+.|+.-|..|+|..+... .+.|+|+. .+|.+.+ ...+||+++-- .+ ++
T Consensus 45 Rs~~IkKGD~V~Vi~GkdKGk~GkVl~V~~k---k~~V~VEGVN~~K~~G~~~eapIh~SNV~i~~~------k~--dk- 112 (150)
T 3iz5_Y 45 RSIPIRKDDEVQVVRGSYKGREGKVVQVYRR---RWVIHVERITREKVNGSTVNVGIHPSKVVVTKL------KL--DK- 112 (150)
T ss_dssp SEEECCSSSEEEECSSTTTTCEEEEEEEETT---TTEEEETTCEEECTTSCEEECCBCGGGEEEEEC------CC--CS-
T ss_pred cccccCCCCEEEEeecCCCCccceEEEEEcC---CCEEEEeCcEEEeCCCCEEecccchHHEEEEcc------cC--Ch-
Confidence 3578889999999999999999999998542 23455433 5564332 33467766652 12 22
Q ss_pred eeeehHHHHHHH
Q 025838 226 IKLSIIEEARKR 237 (247)
Q Consensus 226 i~~~~~~~~~~~ 237 (247)
-|..++|.+.+.
T Consensus 113 ~R~~~lerk~~~ 124 (150)
T 3iz5_Y 113 DRKAILDRKASG 124 (150)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHhccchhh
Confidence 566677666543
No 37
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=67.99 E-value=6.1 Score=30.27 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=20.9
Q ss_pred CcEEEEECCCcceeEEEEEeEEE
Q 025838 160 GNVVMVTGGRNRGRVGIIKNREK 182 (247)
Q Consensus 160 G~~~~vtgG~n~G~vG~I~~i~~ 182 (247)
|+.++|+.|+.-|..|+|.++..
T Consensus 1 GD~V~Vi~GkdKGk~GkV~~V~~ 23 (96)
T 2ftc_N 1 GDTVEILEGKDAGKQGKVVQVIR 23 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEC
Confidence 78899999999999999999864
No 38
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=67.89 E-value=3 Score=32.86 Aligned_cols=29 Identities=31% Similarity=0.617 Sum_probs=25.2
Q ss_pred EEeeCCcEEEEECCCcceeEEEEEeEEEe
Q 025838 155 IKFDVGNVVMVTGGRNRGRVGIIKNREKH 183 (247)
Q Consensus 155 ikfe~G~~~~vtgG~n~G~vG~I~~i~~~ 183 (247)
+++..|+.+.|+.|+.-|..|+|.++...
T Consensus 5 ~~IkkGD~V~Vi~GkdKGk~GkV~~V~~~ 33 (110)
T 3v2d_Y 5 MHVKKGDTVLVASGKYKGRVGKVKEVLPK 33 (110)
T ss_dssp CSCCTTSEEEECSSTTTTCEEEEEEEEGG
T ss_pred cccCCCCEEEEeEcCCCCeEeEEEEEECC
Confidence 45678999999999999999999998643
No 39
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=66.62 E-value=4.1 Score=32.18 Aligned_cols=36 Identities=19% Similarity=0.432 Sum_probs=29.2
Q ss_pred EeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEc
Q 025838 156 KFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD 194 (247)
Q Consensus 156 kfe~G~~~~vtgG~n~G~vG~I~~i~~~~~s~~~V~v~d 194 (247)
++..|+.+.|+.|+.-|..|+|.++.. ..+.|+|+.
T Consensus 15 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~---~~~~V~VEG 50 (115)
T 2zjr_R 15 HFKKGDTVIVLSGKHKGQTGKVLLALP---RDQKVVVEG 50 (115)
T ss_dssp SSCTTSEEECCSSSSTTCEEEEEEEET---TTTEEEESS
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEEEC---CCCEEEEeC
Confidence 678899999999999999999999853 234566654
No 40
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=64.90 E-value=5 Score=32.39 Aligned_cols=32 Identities=31% Similarity=0.552 Sum_probs=27.0
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEE
Q 025838 157 FDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHI 192 (247)
Q Consensus 157 fe~G~~~~vtgG~n~G~vG~I~~i~~~~~s~~~V~v 192 (247)
.|+|-+|++..|.+.|+.++|.+|..+ +-|.|
T Consensus 7 vevGRVv~i~~G~~aGklavIVdIID~----nrvLV 38 (126)
T 4a18_F 7 VQVGRVVYINYGADKGKLAVIVNIINQ----NRILI 38 (126)
T ss_dssp EETTEEEEECSSTTTTEEEEEEEEETT----TEEEE
T ss_pred eecceEEEEccCCccCCEEEEEEEecC----CeEEE
Confidence 478999999999999999999999654 45555
No 41
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=62.89 E-value=3.9 Score=33.70 Aligned_cols=55 Identities=16% Similarity=0.175 Sum_probs=38.2
Q ss_pred EEEeeCCcEEEEECCCcceeE-EEEEeEEEecCCccEEEEEcCC-----CCeEe--EeeceEEEEc
Q 025838 154 FIKFDVGNVVMVTGGRNRGRV-GIIKNREKHKGSFETIHIQDAL-----GHEFA--TRLGNVFTIG 211 (247)
Q Consensus 154 ~ikfe~G~~~~vtgG~n~G~v-G~I~~i~~~~~s~~~V~v~d~~-----g~~F~--T~~~~vfvIG 211 (247)
.+++..|+.+.|+.|..-|.. |+|..+.. ..+.|+|+.-+ |.+++ ...+||+++-
T Consensus 46 ~~~IkkGD~V~Vi~GkdKGk~~GkV~~V~~---k~~~V~VEgvn~~Kp~G~~~e~PIh~SNV~lv~ 108 (145)
T 2zkr_t 46 SMPIRKDDEVQVVRGHYKGQQIGKVVQVYR---KKYVIYIERVQREKANGTTVHVGIHPSKVVITR 108 (145)
T ss_dssp CCBCCTTCEEEECSSTTTTCCSEEEEEEET---TTTEEEETTCEEECSSCCEEECCBCGGGEEECC
T ss_pred ccccCCCCEEEEeecCCCCcceeEEEEEEC---CCCEEEEeeeEeEcCCCceEEeccCHHHEEEEc
Confidence 357888999999999999999 99999853 23456665443 43322 2356776664
No 42
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=57.10 E-value=5.7 Score=32.32 Aligned_cols=26 Identities=27% Similarity=0.548 Sum_probs=23.7
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEEE
Q 025838 157 FDVGNVVMVTGGRNRGRVGIIKNREK 182 (247)
Q Consensus 157 fe~G~~~~vtgG~n~G~vG~I~~i~~ 182 (247)
.|+|-+|++..|++.|+..+|.+|..
T Consensus 7 vevGRVV~i~~Gr~aGk~avIV~iiD 32 (134)
T 3iz5_N 7 VEIGRVALVNYGKDYGRLVVIVDVVD 32 (134)
T ss_dssp CCSSEEEECSCCSSSCCEEEEEEECS
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEcC
Confidence 47899999999999999999999854
No 43
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=56.15 E-value=25 Score=26.96 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=28.4
Q ss_pred eEEEccCceeEecC-----C-CCccCCCeEEEecCCCceeeEEEeeCCcEEE
Q 025838 119 PYINTYDGRTIRYP-----D-PLIKANDTIKLDLETNKITEFIKFDVGNVVM 164 (247)
Q Consensus 119 ~ql~~hDGrni~~~-----d-~~ik~~Dtv~i~l~~~kI~d~ikfe~G~~~~ 164 (247)
..+.+..|+++.++ | ..+++|++|-++-.+..|++.+|++.+..+.
T Consensus 52 ~iVk~s~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~iLp~e~Dp~V~ 103 (109)
T 2wg5_A 52 VVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVY 103 (109)
T ss_dssp EEEEETTSCEEEECBCTTSCTTTCCTTCEEEEETTTCCEEEEEC--------
T ss_pred EEEEeCCCCEEEEEcccccCHHHCCCCCEEEECCcceEeEEeCCCCcCccch
Confidence 33444556664322 3 3699999999999999999999999987664
No 44
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.25 E-value=5 Score=27.72 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=24.9
Q ss_pred EEeeCCcEEEEECCCcceeEEEEEeEE
Q 025838 155 IKFDVGNVVMVTGGRNRGRVGIIKNRE 181 (247)
Q Consensus 155 ikfe~G~~~~vtgG~n~G~vG~I~~i~ 181 (247)
..|++|+.+-|+.|.=.|..|+|.++.
T Consensus 6 ~~f~~GD~V~V~~Gpf~g~~G~V~evd 32 (59)
T 2e6z_A 6 SGFQPGDNVEVCEGELINLQGKILSVD 32 (59)
T ss_dssp SSCCTTSEEEECSSTTTTCEEEECCCB
T ss_pred ccCCCCCEEEEeecCCCCCEEEEEEEe
Confidence 458999999999999999999999985
No 45
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=51.47 E-value=9.5 Score=31.44 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=23.5
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEEE
Q 025838 157 FDVGNVVMVTGGRNRGRVGIIKNREK 182 (247)
Q Consensus 157 fe~G~~~~vtgG~n~G~vG~I~~i~~ 182 (247)
+++|..|+|..|+++|+-++|..+..
T Consensus 5 ~kpGrVvivl~Gr~aGkkaVIvk~iD 30 (144)
T 4a18_N 5 LKYGRVVILLQGRFAGKKAVIVKSSE 30 (144)
T ss_dssp CCTTEEEEECSSTTTTCEEEEEEEES
T ss_pred ccCCeEEEEecCCcCCCEEEEEEecC
Confidence 57899999999999999999998754
No 46
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=49.20 E-value=9.1 Score=31.29 Aligned_cols=32 Identities=25% Similarity=0.525 Sum_probs=26.5
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEE
Q 025838 157 FDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHI 192 (247)
Q Consensus 157 fe~G~~~~vtgG~n~G~vG~I~~i~~~~~s~~~V~v 192 (247)
.++|-+|++..|++.|+..+|.+|..+ +.|.|
T Consensus 15 ve~GrVV~i~~Gr~aGk~avIV~iiD~----~rVLV 46 (138)
T 3izc_N 15 VEVGRVVLIKKGQSAGKLAAIVEIIDQ----KKVLI 46 (138)
T ss_dssp SSTTEEEECCSCSSSCCEEEEEEECSS----SEEEE
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEecC----CEEEE
Confidence 468999999999999999999998542 45555
No 47
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=48.64 E-value=8 Score=28.79 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=22.8
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEE
Q 025838 157 FDVGNVVMVTGGRNRGRVGIIKNRE 181 (247)
Q Consensus 157 fe~G~~~~vtgG~n~G~vG~I~~i~ 181 (247)
+++|.+|++..|+..|+..+|.++.
T Consensus 4 ~~~Grvv~~~~Gr~~Gk~~vIv~ii 28 (83)
T 3j21_5 4 IDVGRIAVVIAGRRAGQKVVVVDII 28 (83)
T ss_dssp CCTTEEEECSSSSSSCCCEEEEEEC
T ss_pred cccCEEEEEeecCCCCCEEEEEEEc
Confidence 5789999999999999999999873
No 48
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=48.21 E-value=9.7 Score=28.87 Aligned_cols=51 Identities=12% Similarity=0.171 Sum_probs=33.5
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCC----CCeEeEeeceEEEEc
Q 025838 157 FDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDAL----GHEFATRLGNVFTIG 211 (247)
Q Consensus 157 fe~G~~~~vtgG~n~G~vG~I~~i~~~~~s~~~V~v~d~~----g~~F~T~~~~vfvIG 211 (247)
+++|.+|++..|++.|+..+|.++.. . +.|.|-|.. ...-.....++....
T Consensus 4 v~~GrVv~~~~Gr~~Gk~~VIv~~iD--~--~~vLV~gp~~~~~~~rk~~n~khl~~T~ 58 (96)
T 2joy_A 4 IEVGRICVKVKGREAGSKCVIVDIID--D--NFVLVTGPKDITGVKRRRVNILHLEPTD 58 (96)
T ss_dssp SSTTEEEECSSSSTTCCEEEEEEECS--S--SCEEEECCTTTTCCCCEEESCSSCEEEE
T ss_pred cccCEEEEEeecCCCCCEEEEEEEeC--C--CEEEEECCcccCCcCCEEEchHHEEEee
Confidence 57899999999999999999998732 2 245454432 122344455555444
No 49
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=39.82 E-value=15 Score=29.23 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=26.1
Q ss_pred EEeeCCcEEEEECCCcceeEEEEEeEEEe
Q 025838 155 IKFDVGNVVMVTGGRNRGRVGIIKNREKH 183 (247)
Q Consensus 155 ikfe~G~~~~vtgG~n~G~vG~I~~i~~~ 183 (247)
..|++|+.+-|+.|.-.|..|+|.++..+
T Consensus 90 ~~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~ 118 (152)
T 3p8b_B 90 SGLEPGDLVEVIAGPFKGQKAKVVKIDES 118 (152)
T ss_dssp TTCCTTCEEEECSSTTTTCEEEEEEEETT
T ss_pred ccCCCCCEEEEeeecCCCCEEEEEEEeCC
Confidence 46899999999999999999999999643
No 50
>2x1d_A Acyl-coenzyme A\:6-aminopenicillanic-acid-acyltransferase 40 kDa form; zymogen, NTN-hydrolase, penicillin biosynthesis; 1.64A {Penicillium chrysogenum} PDB: 2x1e_A* 2x1c_A
Probab=37.69 E-value=63 Score=28.44 Aligned_cols=29 Identities=14% Similarity=0.216 Sum_probs=26.3
Q ss_pred cccchHHHHHHhhhcccccHHHHHHHHhCc
Q 025838 21 RECLPLILILRNRLKYALTYREVIAILMQR 50 (247)
Q Consensus 21 ~eslPL~i~LRd~LkyA~t~rEak~Il~~~ 50 (247)
...+|...++|..|. +.|.+||..+|.+-
T Consensus 176 ~~g~~~~~~~r~vL~-~~tv~eav~~l~~~ 204 (357)
T 2x1d_A 176 PTGVPSHIALRIALE-STSPSQAYDRIVEQ 204 (357)
T ss_dssp TTSBCHHHHHHHHHT-CSSHHHHHHHHHHT
T ss_pred CCCccHhHHHHHHhc-CCCHHHHHHHHHHh
Confidence 357999999999999 99999999999854
No 51
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=34.38 E-value=57 Score=29.03 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=34.8
Q ss_pred CCccCCCeEEEecCCCceeeEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCCCCe
Q 025838 134 PLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHE 199 (247)
Q Consensus 134 ~~ik~~Dtv~i~l~~~kI~d~ikfe~G~~~~vtgG~n~G~vG~I~~i~~~~~s~~~V~v~d~~g~~ 199 (247)
..+++|++|.++ ++..|++.++|+. +|.+-++.++- .+ .+.+.|-+..|++
T Consensus 133 e~LkPG~rVaLN-eSlaVVevLp~E~-----------~Gev~tv~E~l--~d-~~R~lV~~~~~ee 183 (251)
T 3m9b_A 133 ASLKKGQTVRLN-EALTVVEAGTFEA-----------VGEISTLREIL--AD-GHRALVVGHADEE 183 (251)
T ss_dssp TTSCSSCEEEEC-TTCCBCCCCCCCC-----------CSEEEEEEEEC--TT-SSEEEEECSSSCE
T ss_pred HHCCCCCEEEeC-CccEEEEecCCCC-----------cccEEEEEEEe--cC-CCEEEEecCCCce
Confidence 369999999996 7999999999986 46666666652 11 1234344555544
No 52
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=32.80 E-value=30 Score=28.15 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=25.6
Q ss_pred EEeeCCcEEEEECCCcceeEEEEEeEEE
Q 025838 155 IKFDVGNVVMVTGGRNRGRVGIIKNREK 182 (247)
Q Consensus 155 ikfe~G~~~~vtgG~n~G~vG~I~~i~~ 182 (247)
..|++|+.+.|+.|.=.|..|+|.++..
T Consensus 126 ~~~~~Gd~V~V~~GPf~g~~G~v~~v~~ 153 (181)
T 2jvv_A 126 TLFEPGEMVRVNDGPFADFNGVVEEVDY 153 (181)
T ss_dssp CCCCTTEEEEECSSTTTTEEEEEEEEET
T ss_pred ccCCCCCEEEEeccCCCCcEEEEEEEeC
Confidence 4788999999999999999999999864
No 53
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1
Probab=31.38 E-value=1.4e+02 Score=21.40 Aligned_cols=53 Identities=25% Similarity=0.543 Sum_probs=33.8
Q ss_pred ccHHHHHHHHhCceEEECCE--EeccccCCCcceeeEEeccCC--ceEEEEEcCCCceEEE
Q 025838 38 LTYREVIAILMQRHVLVDAK--VRTDKTYPAGFMDVVSIPKTN--ENFRLLYDTKGRFRLH 94 (247)
Q Consensus 38 ~t~rEak~Il~~~~V~VDGk--vr~D~k~PvG~MDVIsI~kt~--e~yRvl~d~kgrf~l~ 94 (247)
.+..||.++|.+.. .||- ||.....|--+ ++|+-..+ .|||+..+..|.|.+-
T Consensus 10 isR~~Ae~lL~~~~--~~G~FLVR~S~~~~g~~--~LSv~~~~~v~H~~I~~~~~g~~~l~ 66 (103)
T 1i3z_A 10 LTKRECEALLLKGG--VDGNFLIRDSESVPGAL--CLCVSFKKLVYSYRIFREKHGYYRIE 66 (103)
T ss_dssp CCHHHHHHHHHTTC--STTEEEEEECSSSTTCE--EEEEECSSSEEEEEEEECTTSCEEEC
T ss_pred CCHHHHHHHHhhcC--CCceEEEEeCCCCCCCE--EEEEEECCEEEEEEEEECCCCeEEEe
Confidence 47789999998643 4665 55554444323 67764332 4788877777777653
No 54
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=31.11 E-value=84 Score=27.32 Aligned_cols=60 Identities=15% Similarity=0.272 Sum_probs=36.9
Q ss_pred EEEEcChhhhcceeEEEeeeEEeeCCce-----EEEccCceeEecCCCCccCCCeEEEecCCCceeeEEEee
Q 025838 92 RLHSIRDEEAKFKLCKVRSVQFGQKGIP-----YINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFD 158 (247)
Q Consensus 92 ~l~~I~~eEa~~KLcKV~~k~~~~gg~~-----ql~~hDGrni~~~d~~ik~~Dtv~i~l~~~kI~d~ikfe 158 (247)
.++-|+++ .+|..+ .+.+...|.| .+.+.||+= |.. ....++..+||..+++++..|++.
T Consensus 127 ~l~viD~~--t~~v~~--~I~Vg~~~~p~~~~nele~~dg~l--yvn-~~~~~~V~vID~~tg~V~~~I~~~ 191 (266)
T 2iwa_A 127 ILYEIDPH--TFKLIK--KHNVKYNGHRVIRLNELEYINGEV--WAN-IWQTDCIARISAKDGTLLGWILLP 191 (266)
T ss_dssp EEEEECTT--TCCEEE--EEECEETTEECCCEEEEEEETTEE--EEE-ETTSSEEEEEETTTCCEEEEEECH
T ss_pred eEEEEECC--CCcEEE--EEEECCCCcccccceeEEEECCEE--EEe-cCCCCeEEEEECCCCcEEEEEECC
Confidence 34555542 334433 3344445555 345568852 322 356788899999999999999985
No 55
>2in0_A Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 2l8l_A 2in9_A 2in8_A 3ifj_A 3igd_A
Probab=29.82 E-value=64 Score=24.70 Aligned_cols=25 Identities=12% Similarity=-0.035 Sum_probs=17.1
Q ss_pred ccEEEEEcCCCCeEeEeeceEEEEc
Q 025838 187 FETIHIQDALGHEFATRLGNVFTIG 211 (247)
Q Consensus 187 ~~~V~v~d~~g~~F~T~~~~vfvIG 211 (247)
..++.|+..+|.+..+-.+.-|...
T Consensus 54 ~~~~~i~t~~G~~i~~T~~H~~~t~ 78 (139)
T 2in0_A 54 RDVIGLRIAGGAILWATPDHKVLTE 78 (139)
T ss_dssp EEEEEEEETTSCEEEECTTCEEEET
T ss_pred cEEEEEEeCCCCEEEecCCCeEEec
Confidence 3577777777777776667766654
No 56
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=29.50 E-value=1.9e+02 Score=22.09 Aligned_cols=78 Identities=10% Similarity=0.050 Sum_probs=53.9
Q ss_pred CceEEECCEEeccccCCCcceeeEEeccCCceEEEEE-cCCC-ceEEEEcChhh------hc---ceeEEEeeeEEeeCC
Q 025838 49 QRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLY-DTKG-RFRLHSIRDEE------AK---FKLCKVRSVQFGQKG 117 (247)
Q Consensus 49 ~~~V~VDGkvr~D~k~PvG~MDVIsI~kt~e~yRvl~-d~kg-rf~l~~I~~eE------a~---~KLcKV~~k~~~~gg 117 (247)
++...+||....-..+ ||. |.++.+...++.+.. |..| .+....-..++ +. -..+||.+....-+|
T Consensus 21 ~~~f~i~g~~i~~V~i-VG~--V~~~~~~~~~~~~~ldD~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G~l~~f~g 97 (132)
T 3kdf_D 21 DEVFRIGNVEISQVTI-VGI--IRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQN 97 (132)
T ss_dssp SSCEEETTEECCEEEE-EEE--EEEEEECSSEEEEEEECSSSSCEEEEEEC---------CCCCTTCEEEEEEEEEEETT
T ss_pred CCcEEECCEEEEEEEE-EEE--EEEEEEcCCeEEEEEECCCCCEEEEEEEccCCCcccccccccCCCEEEEEEEEEeECC
Confidence 5678999998887765 566 666766666666644 6668 77776654332 11 368999999888899
Q ss_pred ceEEEccCceeE
Q 025838 118 IPYINTYDGRTI 129 (247)
Q Consensus 118 ~~ql~~hDGrni 129 (247)
..||+.+.=|.+
T Consensus 98 ~~qi~~~~ir~v 109 (132)
T 3kdf_D 98 KKSLVAFKIMPL 109 (132)
T ss_dssp EEEEEEEEEEEC
T ss_pred EEEEEEEEEEEc
Confidence 999988654444
No 57
>1q7h_A Conserved hypothetical protein; structural genomics, MCSG, PSI, PR structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} SCOP: b.122.1.1 d.17.6.2
Probab=28.47 E-value=42 Score=26.53 Aligned_cols=40 Identities=18% Similarity=0.175 Sum_probs=23.0
Q ss_pred eeEEeeCCceEEEccCceeEecC-----CCCccCCCeEEEecCCCc
Q 025838 110 SVQFGQKGIPYINTYDGRTIRYP-----DPLIKANDTIKLDLETNK 150 (247)
Q Consensus 110 ~k~~~~gg~~ql~~hDGrni~~~-----d~~ik~~Dtv~i~l~~~k 150 (247)
.+.++..|..+-.+ .|.++..+ ++.++.||.|.|--+.++
T Consensus 71 ~~v~vd~ga~~~l~-~Ga~ll~~GV~~~~~~~~~gd~V~V~~~~g~ 115 (153)
T 1q7h_A 71 NIVTVDEGAEPHIL-NGSDLFAPGIVSMDDSIRKGDMIFVKSSKGY 115 (153)
T ss_dssp SEEEECTTTHHHHT-TTCCEEGGGEEEECTTCCTTCEEEEEETTSC
T ss_pred CEEEECHhHHHHHH-cCCCcCccccCcccCceeCCCEEEEEECCCC
Confidence 33344444433334 37776433 567888888887776554
No 58
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=28.46 E-value=1.1e+02 Score=22.44 Aligned_cols=10 Identities=20% Similarity=0.451 Sum_probs=6.5
Q ss_pred EeeCCcEEEE
Q 025838 156 KFDVGNVVMV 165 (247)
Q Consensus 156 kfe~G~~~~v 165 (247)
.|++|+.+.|
T Consensus 63 ~i~~Gdvv~i 72 (97)
T 3e0e_A 63 EVKKGDIAEV 72 (97)
T ss_dssp CCCTTCEEEE
T ss_pred ccCCCCEEEE
Confidence 5666666666
No 59
>3gvz_A Uncharacterized protein CV2077; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Chromobacterium violaceum atcc 12472}
Probab=28.38 E-value=42 Score=29.85 Aligned_cols=30 Identities=17% Similarity=-0.041 Sum_probs=21.9
Q ss_pred CcccchHHHHHHhhhcccccHHHHHHHHhC
Q 025838 20 SRECLPLILILRNRLKYALTYREVIAILMQ 49 (247)
Q Consensus 20 ~~eslPL~i~LRd~LkyA~t~rEak~Il~~ 49 (247)
.+...|...++|..|.++.|.+||..+|.+
T Consensus 103 ~~~g~p~~~~~r~iL~~~aTv~EAv~~L~~ 132 (299)
T 3gvz_A 103 LRADSARHGVLTRLLRDYGSLDEVASAADK 132 (299)
T ss_dssp TC------CCHHHHHHHCCSHHHHHHTHHH
T ss_pred ccCCCCHhHHHHHHHhcCCCHHHHHHHHHh
Confidence 455679999999999999999999999984
No 60
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}
Probab=27.37 E-value=1.3e+02 Score=24.33 Aligned_cols=43 Identities=16% Similarity=0.086 Sum_probs=29.2
Q ss_pred ceeEEEee----eEEeeCCceEEEccCceeEecCCCCccCCCeEEEe
Q 025838 103 FKLCKVRS----VQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLD 145 (247)
Q Consensus 103 ~KLcKV~~----k~~~~gg~~ql~~hDGrni~~~d~~ik~~Dtv~i~ 145 (247)
-++.||+- .-.++..+|.+...+|.-.-..-.++++||.|.+-
T Consensus 74 ~~~~~I~t~~G~~I~~T~~H~~~v~~~g~~~~~~A~eLk~GD~v~v~ 120 (185)
T 2lcj_A 74 DHLIRFELEDGRSFETTVDHPVLVYENGRFIEKRAFEVKEGDKVLVS 120 (185)
T ss_dssp SCEEEEEETTSCEEEECSSSEEEEEETTEEEEEEGGGCCTTCEEEEC
T ss_pred ceEEEEEECCCCEEEECCCCEEEEecCCeEEEEEHHHCCCCCEEEEc
Confidence 35666642 34568888888888876443344579999998863
No 61
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=26.88 E-value=99 Score=22.37 Aligned_cols=59 Identities=10% Similarity=0.092 Sum_probs=39.1
Q ss_pred EEEeeeEEeeCCceEEEccCceeEecCCCCccCCCeEEEecCCCceeeEEEeeCCcEEEEECCC
Q 025838 106 CKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGR 169 (247)
Q Consensus 106 cKV~~k~~~~gg~~ql~~hDGrni~~~d~~ik~~Dtv~i~l~~~kI~d~ikfe~G~~~~vtgG~ 169 (247)
+||...+.-+|+..-+..|..+...+. =+.-++.+..++++. ..+.+.+|...++--|.
T Consensus 17 ~rV~r~~i~PG~~~~~H~H~~~~e~~~----v~~G~~~v~~~d~~~-~~~~l~~G~~~~ip~G~ 75 (98)
T 3lag_A 17 VRVTEWRLPPGSATGHHTHGMDYVVVP----MADGEMTIVAPDGTR-SLAQLKTGRSYARKAGV 75 (98)
T ss_dssp EEEEEEEECTTEECCSEECCSCEEEEE----SSCBC-CEECTTSCE-ECCCBCTTCCEEECTTC
T ss_pred EEEEEEEECCCCccCcEECCCcEEEEE----EeccEEEEEeCCCce-EEEEecCCcEEEEcCCC
Confidence 677777888999999999998876431 222345556665543 23456778888876663
No 62
>2hbp_A Cytoskeleton assembly control protein SLA1; SHD1, NPFX(1,2)D, endocytosis, protein binding; NMR {Saccharomyces cerevisiae}
Probab=26.88 E-value=60 Score=23.50 Aligned_cols=44 Identities=25% Similarity=0.344 Sum_probs=33.1
Q ss_pred EEEEEcCCCceEEEEcChhhhcceeEEEeeeEEeeCCceEEEccCceeEecCCCCccC
Q 025838 81 FRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKA 138 (247)
Q Consensus 81 yRvl~d~kgrf~l~~I~~eEa~~KLcKV~~k~~~~gg~~ql~~hDGrni~~~d~~ik~ 138 (247)
.|..-|..|.|.+ ||.| + -+++|.+||.-.||..|-+|-.....
T Consensus 5 ~RtWtDrtG~F~V------eA~f--l------g~~dgki~LhK~nGv~I~VP~~klS~ 48 (68)
T 2hbp_A 5 SRLWVDRSGTFKV------DAEF--I------GCAKGKIHLHKANGVKIAVAADKLSN 48 (68)
T ss_dssp SEEEEBSSSCCEE------EEEE--E------EEETTEEEEECTTSCEEEEETTSBCH
T ss_pred ccEEEcCCCCeEE------EEEE--E------EEeCCEEEEEecCCcEEEeEhHHcCH
Confidence 4889999999965 5643 2 24689999999999999877554433
No 63
>2qf4_A Cell shape determining protein MREC; filament A-lytic protease fold, structural protein; 1.20A {Streptococcus pneumoniae} PDB: 2qf5_A
Probab=26.58 E-value=2.2e+02 Score=23.06 Aligned_cols=60 Identities=12% Similarity=0.045 Sum_probs=40.8
Q ss_pred CCCccCCCeEEEecCCCceeeEEEeeCCcEEEEECCCcceeEEEEEeEEEec-CCccEEEEEcCCCCeEeEeeceEEEEc
Q 025838 133 DPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK-GSFETIHIQDALGHEFATRLGNVFTIG 211 (247)
Q Consensus 133 d~~ik~~Dtv~i~l~~~kI~d~ikfe~G~~~~vtgG~n~G~vG~I~~i~~~~-~s~~~V~v~d~~g~~F~T~~~~vfvIG 211 (247)
+.+++.||.|+-+=-.+. |-+|= -||+|.+++..+ +.+..+.++=+.. -.++++|+||-
T Consensus 106 ~~~i~~GD~vvTSGl~g~------fP~Gi-----------pVG~V~~v~~~~~~~~~~i~v~p~ad---~~~l~~V~Vi~ 165 (172)
T 2qf4_A 106 NSDISAGDKVTTGGLGNF------NVADI-----------PVGEVVATTHSTDYLTREVTVKLSAD---THNVDVIELVG 165 (172)
T ss_dssp CCCCCTTCEEEEECCSSS------CCEEE-----------EEEEEEEEESTTCSSCCEEEEEESCC---CTTCCEEEEEE
T ss_pred CCCCCCCCEEEECCCCCc------CCCCC-----------EEEEEEEEecCCCCcEEEEEEEECCC---cccCeEEEEEe
Confidence 456888888877755543 22221 389999998766 4567888875432 45788999997
Q ss_pred c
Q 025838 212 K 212 (247)
Q Consensus 212 ~ 212 (247)
.
T Consensus 166 ~ 166 (172)
T 2qf4_A 166 N 166 (172)
T ss_dssp E
T ss_pred C
Confidence 5
No 64
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A*
Probab=26.47 E-value=1.3e+02 Score=21.77 Aligned_cols=54 Identities=11% Similarity=0.277 Sum_probs=33.3
Q ss_pred cccHHHHHHHHhCceEEECCE--EeccccCCCcceeeEEeccCC--ceEEEEEcCCCceEEE
Q 025838 37 ALTYREVIAILMQRHVLVDAK--VRTDKTYPAGFMDVVSIPKTN--ENFRLLYDTKGRFRLH 94 (247)
Q Consensus 37 A~t~rEak~Il~~~~V~VDGk--vr~D~k~PvG~MDVIsI~kt~--e~yRvl~d~kgrf~l~ 94 (247)
..+..||..+|.+.. .||- ||.....|-.+ ++|+--.+ .|||+..+..|.|.+.
T Consensus 10 ~isR~~Ae~lL~~~~--~~G~FLVR~S~~~~g~~--~LSv~~~~~v~H~~I~~~~~g~~~l~ 67 (104)
T 1d4t_A 10 KISRETGEKLLLATG--LDGSYLLRDSESVPGVY--CLCVLYHGYIYTYRVSQTETGSWSAE 67 (104)
T ss_dssp SCCHHHHHHHHHHHC--CTTEEEEEECSSSTTCE--EEEEEETTEEEEEEEEECTTSCEEEC
T ss_pred CCCHHHHHHHHHhcC--CCCEEEEeeCCCCCCCE--EEEEEECCeEEEEEEEECCCCeEEEe
Confidence 347789999997432 3564 45444444333 66664332 5888888777877654
No 65
>1zv1_A Doublesex protein; UBA domain, dimerization, sex determination, transcription factor, protein binding; 1.60A {Drosophila melanogaster} PDB: 2jz0_A
Probab=26.09 E-value=26 Score=25.15 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=23.0
Q ss_pred cccchHHHHHHhhhcccc-cHHHHHHHHhCceE
Q 025838 21 RECLPLILILRNRLKYAL-TYREVIAILMQRHV 52 (247)
Q Consensus 21 ~eslPL~i~LRd~LkyA~-t~rEak~Il~~~~V 52 (247)
.|.|||.+++ ||+|. +..||.+-+.+|+-
T Consensus 24 WEmMpLMYVI---LK~A~~d~eeAsrrI~Eg~~ 53 (65)
T 1zv1_A 24 WELMPLMYVI---LKDADANIEEASRRIEEGQY 53 (65)
T ss_dssp GGGHHHHHHH---HHHTTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHH---HhccCCCHHHHHHHHHHHHH
Confidence 5799999885 78996 77888887777653
No 66
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=25.73 E-value=38 Score=27.87 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=41.1
Q ss_pred ccchHHHHHHhhhcccccHHHHHHHHhCc-----eEEECCEEeccccCCCcc---eeeEEeccCC
Q 025838 22 ECLPLILILRNRLKYALTYREVIAILMQR-----HVLVDAKVRTDKTYPAGF---MDVVSIPKTN 78 (247)
Q Consensus 22 eslPL~i~LRd~LkyA~t~rEak~Il~~~-----~V~VDGkvr~D~k~PvG~---MDVIsI~kt~ 78 (247)
...+|+=+||+.|++--+ |.=+.+| -|+|||+++.---.|+.- ++|++|+-.+
T Consensus 21 p~~tLLd~LR~~lgltgt----k~gC~~G~CGACtV~vdG~~v~sC~~~~~~~~G~~I~TiEgl~ 81 (160)
T 3hrd_D 21 PNKRLLDLLREDFGLTSV----KEGCSEGECGACTVIFNGDPVTTCCMLAGQADESTIITLEGVA 81 (160)
T ss_dssp SSSBHHHHHHTTSCCTTS----CCSSSSSSSCTTEEEETTEEEEGGGSBGGGGTTEEEECGGGTS
T ss_pred CCCCHHHHHHHhcCCCcc----ccccCCCCCCCCEEEECCEEEEchhhhhhhhCCCceEEeCCCC
Confidence 467999999998876433 3336666 799999999999999865 5789987654
No 67
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=25.21 E-value=44 Score=24.94 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=13.3
Q ss_pred EecCCCCccCCCeEEEe
Q 025838 129 IRYPDPLIKANDTIKLD 145 (247)
Q Consensus 129 i~~~d~~ik~~Dtv~i~ 145 (247)
||..|.+|++||.|.+.
T Consensus 31 iR~nDr~~~vGD~l~l~ 47 (83)
T 3iuw_A 31 IRKNDRNFQVGDILILE 47 (83)
T ss_dssp EEECCSCCCTTCEEEEE
T ss_pred EEecccCCCCCCEEEEE
Confidence 46778889999987753
No 68
>2oqc_A Penicillin V acylase; NTN-hydrolase, conjugated bIle acid HY choloylglycine hydrolase, hydrolase; 2.50A {Bacillus subtilis}
Probab=24.58 E-value=2.2e+02 Score=25.15 Aligned_cols=66 Identities=12% Similarity=0.045 Sum_probs=46.2
Q ss_pred CcccchHHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeeEEeccCCceEEEEEcCCCceEEEEcChh
Q 025838 20 SRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDE 99 (247)
Q Consensus 20 ~~eslPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~kt~e~yRvl~d~kgrf~l~~I~~e 99 (247)
....|+...|+|-.|..+.|-.||+.+|.+ +.+ -+..+|... +...-|| ++-|..|+-.+.+..+.
T Consensus 94 ~~~~l~~~~~i~~iL~~~~tV~Ea~~~L~~--~~i-----~~~~~~~~~------~~~~~H~-~i~D~sG~s~viE~~~g 159 (327)
T 2oqc_A 94 DTVHIVPHEFVTWVLSVCQSLEDVKEKIRS--LTI-----VEKKLDLLD------TVLPLHW-ILSDRTGRNLTIEPRAD 159 (327)
T ss_dssp SSEEECGGGHHHHHHHHCCSHHHHHHHGGG--EEE-----BCCCBGGGT------BCCCEEE-EEECTTSCEEEEEEETT
T ss_pred CCCccCHHHHHHHHHHhCCCHHHHHHHHHc--Cce-----ecccccCcC------CccceEE-EEEcCCCCEEEEEEecC
Confidence 355899999999999999999999999986 322 233444321 1133455 56788888777776554
No 69
>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*
Probab=24.24 E-value=2.7e+02 Score=22.07 Aligned_cols=50 Identities=24% Similarity=0.254 Sum_probs=33.2
Q ss_pred eEEeeCCceEEEccCceeE---ecCCCCccCCCeEEEecCCCceeeEEEeeCCcEEEEE
Q 025838 111 VQFGQKGIPYINTYDGRTI---RYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVT 166 (247)
Q Consensus 111 k~~~~gg~~ql~~hDGrni---~~~d~~ik~~Dtv~i~l~~~kI~d~ikfe~G~~~~vt 166 (247)
..++-.|...+.+.||+.- ...+| .-.+.+|.+---...-|++|+++|+.
T Consensus 59 ~li~l~Gs~~v~ldDg~~~~~~~L~~~------~~gL~IppgvWh~~~~~s~~avllvl 111 (141)
T 2pa7_A 59 VLVCLNGSCRVILDDGNIIQEITLDSP------AVGLYVGPAVWHEMHDFSSDCVMMVL 111 (141)
T ss_dssp EEEEEESCEEEEEECSSCEEEEEECCT------TEEEEECTTCEEEEECCCTTCEEEEE
T ss_pred EEEEEccEEEEEEECCcEEEEEEECCC------CcEEEeCCCEEEEEEEcCCCeEEEEE
Confidence 3455677778888888754 21222 13677777777777888888877765
No 70
>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1ka7_A
Probab=23.81 E-value=1.3e+02 Score=22.90 Aligned_cols=53 Identities=11% Similarity=0.265 Sum_probs=34.0
Q ss_pred ccHHHHHHHHhCceEEECCE--EeccccCCCcceeeEEeccC--CceEEEEEcCCCceEEE
Q 025838 38 LTYREVIAILMQRHVLVDAK--VRTDKTYPAGFMDVVSIPKT--NENFRLLYDTKGRFRLH 94 (247)
Q Consensus 38 ~t~rEak~Il~~~~V~VDGk--vr~D~k~PvG~MDVIsI~kt--~e~yRvl~d~kgrf~l~ 94 (247)
.+..||.++|.+.. .||- ||.....|-.| ++|+-.. =.|||+..+..|.|.+.
T Consensus 11 isR~eAe~lL~~~~--~~G~FLVR~S~~~~g~y--~LSv~~~~~v~H~~I~~~~~g~~~l~ 67 (128)
T 1ka6_A 11 ISRETGEKLLLATG--LDGSYLLRDSESVPGVY--CLCVLYHGYIYTYRVSQTETGSWSAE 67 (128)
T ss_dssp CCHHHHHHHHHHHC--CTTCEEEEECSSSTTCE--EEEEESSSCEEEEEEEECTTSCEEEE
T ss_pred CCHHHHHHHHhcCC--CCCEEEEeecCCCCCCE--EEEEEeCCEEEEEEEEECCCCeEEEe
Confidence 47789999997432 3554 45444444333 7777443 35888888888887665
No 71
>2bjf_A Choloylglycine hydrolase; amidohydrolase, NTN-hydrolase, bIle acids, BSH; HET: DXC; 1.67A {Clostridium perfringens} PDB: 2bjg_A 2rlc_A* 2rf8_A 2rg2_A
Probab=23.58 E-value=2.4e+02 Score=24.92 Aligned_cols=66 Identities=18% Similarity=0.243 Sum_probs=46.3
Q ss_pred CcccchHHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeeEEeccCCceEEEEEcCCCceEEEEcChh
Q 025838 20 SRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDE 99 (247)
Q Consensus 20 ~~eslPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~kt~e~yRvl~d~kgrf~l~~I~~e 99 (247)
....|+...|+|-.|..+.|-.||+.+|.+-. + -+..+|... +...-|| ++-|..|+-.+.+..+.
T Consensus 96 ~~~~l~~~~~~~~iL~~~~tV~Ea~~~l~~~~--i-----~~~~~~~~~------~~~~~H~-~i~D~sG~s~viE~~~g 161 (329)
T 2bjf_A 96 GKTNIPVYNFLLWVLANFSSVEEVKEALKNAN--I-----VDIPISENI------PNTTLHW-MISDITGKSIVVEQTKE 161 (329)
T ss_dssp TSEEEEGGGHHHHHHHHCSSHHHHHHHHTTEE--E-----ECCCSSTTC------CCCCEEE-EEECTTSCEEEEEECSS
T ss_pred CCCccCHHHHHHHHHHhCCCHHHHHHHHHhCc--e-----ecccccCcC------CCcceEE-EEEcCCCCEEEEEEecC
Confidence 35589999999999999999999999998632 2 233444321 1123455 46788888877777654
No 72
>2quy_A Penicillin acylase; autoproteolysis, NTN, OXY-anion HOLE, antibiotic resistance, hydrolase, zymogen; 1.70A {Bacillus sphaericus} PDB: 3pva_A 2iwm_A 3mji_A 2z71_A* 2pva_A
Probab=23.10 E-value=41 Score=30.02 Aligned_cols=65 Identities=11% Similarity=0.057 Sum_probs=45.5
Q ss_pred cccchHHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeeEEeccCCceEEEEEcCCCceEEEEcChh
Q 025838 21 RECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDE 99 (247)
Q Consensus 21 ~eslPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~kt~e~yRvl~d~kgrf~l~~I~~e 99 (247)
+..+|...|+|..|..+.|-.||+.+|.+- .+ .+..+|... +...-|| ++-|..|+-.+.+..+.
T Consensus 97 ~~~l~~~~~~r~iL~~~~tV~EA~~~L~~~--~i-----~~~~~~~~~------~~~~~H~-~i~D~sG~s~viE~~~g 161 (335)
T 2quy_A 97 TRGINPVYVISQVLGNCVTVDDVIEKLTSY--TL-----LNEANIILG------FAPPLHY-TFTDASGESIVIEPDKT 161 (335)
T ss_dssp CEEECGGGHHHHHHHHCCSHHHHHHHHHTE--EE-----BCCCCTTTS------SCCCEEE-EEECTTCCEEEEEEETT
T ss_pred CCccCHHHHHHHHHHcCCCHHHHHHHHhhC--ee-----eccccCCCC------CCcceEE-EEEcCCCCEEEEEEeCC
Confidence 458999999999999999999999999972 22 233444321 1123355 45788888877777554
No 73
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=22.74 E-value=1.7e+02 Score=21.92 Aligned_cols=66 Identities=9% Similarity=0.090 Sum_probs=39.0
Q ss_pred EEEEcCCCceEEEEcChhhhcceeEEEeeeE-EeeCCceEEEccCc---eeEecCCCCccCCCeEEEecC
Q 025838 82 RLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQ-FGQKGIPYINTYDG---RTIRYPDPLIKANDTIKLDLE 147 (247)
Q Consensus 82 Rvl~d~kgrf~l~~I~~eEa~~KLcKV~~k~-~~~gg~~ql~~hDG---rni~~~d~~ik~~Dtv~i~l~ 147 (247)
|......|.|.+..++.+++..--|.+.+.. .......+|..... -.+.........|+++.+.-.
T Consensus 64 r~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~g~~v~l~C~ 133 (208)
T 3r4d_A 64 REIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCL 133 (208)
T ss_dssp SEEECTTSCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSSCCTTCCEEEEEE
T ss_pred eeEEecCCeEEEccccccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCceEeeCCCEEEEEE
Confidence 3334467789999999999999999998863 22223334444332 222222223666777666543
No 74
>3dcl_A TM1086; SAD, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.25A {Thermotoga maritima} PDB: 3n99_A
Probab=21.38 E-value=43 Score=30.29 Aligned_cols=73 Identities=26% Similarity=0.391 Sum_probs=46.2
Q ss_pred CCceEEEccCceeEecCCC-----CccCCCe------------EEEecCCCceeeEEEe----eCCcEEEEECCCcceeE
Q 025838 116 KGIPYINTYDGRTIRYPDP-----LIKANDT------------IKLDLETNKITEFIKF----DVGNVVMVTGGRNRGRV 174 (247)
Q Consensus 116 gg~~ql~~hDGrni~~~d~-----~ik~~Dt------------v~i~l~~~kI~d~ikf----e~G~~~~vtgG~n~G~v 174 (247)
.+.||=.-|||.-..+|.- ++++||+ |-+..++.+- ...| =.||.|.|+.|..-|+.
T Consensus 24 ~~~~yrv~~dG~p~ilP~~GGItyNv~vGD~afg~aGDHvEPgVS~~n~~~~~--N~al~~~sCiGN~A~VvSG~AKG~~ 101 (284)
T 3dcl_A 24 MRSPYSVTTEGTVRVIPVLGGITYNVKVGDSAYGWAGDHVEPGVSVMARRKEE--EIPLMTLSCIGNEVIVMSGDAKGSR 101 (284)
T ss_dssp CSSSCEECTTSCEECCCCSBSEESSCCTTSBSSSCBSSSCCCEEEEECSSGGG--HHHHHHHCCBTCEEEECSSTTTTCE
T ss_pred CCCCeEECCCCCEeeccccCcEEEeeeeCCccccccccccCCCccccCCCcCc--ccceeEEeecCceeEEeecccCCCc
Confidence 4556667778877766642 5666665 3344443330 0000 14999999999999999
Q ss_pred EEEEeEEEecCCc-cEEEE
Q 025838 175 GIIKNREKHKGSF-ETIHI 192 (247)
Q Consensus 175 G~I~~i~~~~~s~-~~V~v 192 (247)
|.+.. +|-|+. -+|++
T Consensus 102 G~VtG--kHGGieHVlV~F 118 (284)
T 3dcl_A 102 GFVTG--KHGGVNHVLVHF 118 (284)
T ss_dssp EEEEE--EETTTTEEEEEC
T ss_pred ceEec--ccCCeeeEEEEC
Confidence 99987 466664 34544
No 75
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=20.24 E-value=2.9e+02 Score=21.07 Aligned_cols=78 Identities=14% Similarity=0.154 Sum_probs=50.8
Q ss_pred CceEEECCEEeccccCCCcceeeEEeccCCceEEEE-EcCCCceEEEEcChhh-------hc---ceeEEEeeeEEeeCC
Q 025838 49 QRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLL-YDTKGRFRLHSIRDEE-------AK---FKLCKVRSVQFGQKG 117 (247)
Q Consensus 49 ~~~V~VDGkvr~D~k~PvG~MDVIsI~kt~e~yRvl-~d~kgrf~l~~I~~eE-------a~---~KLcKV~~k~~~~gg 117 (247)
++...+||...+-..+ ||. |.++.....++.+. -|..|.+....-...+ +. -.++||.+.-..-.|
T Consensus 26 ~~~f~i~g~~i~~V~i-VG~--V~~~~~~~~~~~~~ldD~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G~v~~f~g 102 (136)
T 4gop_B 26 DAEFILDGAELGQLTF-VAV--VRNISRNATNVAYSVEDGTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLGTLKSFQN 102 (136)
T ss_dssp SCCCBSSSSBCCEEEE-EEE--EEEEEECSSEEEEEEECSSCEEEEEEECC--------CCSCCTTCEEEEEEEEEEETT
T ss_pred CCcEEECCEEEEEEEE-EEE--EEEEEecCCeEEEEEECCCCCEEEEEecccCCcccccccccCCCCEEEEEEEEEEeCC
Confidence 3567889877766553 455 56666655555543 4666877665543322 11 378999999888899
Q ss_pred ceEEEccCceeE
Q 025838 118 IPYINTYDGRTI 129 (247)
Q Consensus 118 ~~ql~~hDGrni 129 (247)
.+||+.+.=|.+
T Consensus 103 ~~qi~~~~ir~v 114 (136)
T 4gop_B 103 RRSISSGHMRPV 114 (136)
T ss_dssp EEEEEESEEEEC
T ss_pred EEEEEEEEEEEC
Confidence 999988754444
No 76
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=20.12 E-value=14 Score=31.69 Aligned_cols=26 Identities=35% Similarity=0.636 Sum_probs=22.9
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEEE
Q 025838 157 FDVGNVVMVTGGRNRGRVGIIKNREK 182 (247)
Q Consensus 157 fe~G~~~~vtgG~n~G~vG~I~~i~~ 182 (247)
+..|+.++|+.|+.-|..|+|.++..
T Consensus 69 IkKGD~V~VIaGkDKGK~GkVl~V~~ 94 (191)
T 3bbo_W 69 VKVGDTVKVISGGEKGKIGEISKIHK 94 (191)
T ss_dssp SCCSSCEEECSSSSTTCCCSCCCCCS
T ss_pred eecCCEEEEeecCCCCceEEEEEEEC
Confidence 67799999999999999999998854
Done!