BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025840
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FB3|A Chain A, Crystal Structure Of Trypanosoma Brucei Acetyltransferase,
Tb11.01.2886
pdb|3FB3|B Chain B, Crystal Structure Of Trypanosoma Brucei Acetyltransferase,
Tb11.01.2886
pdb|3I3G|A Chain A, Crystal Structure Of Trypanosoma Brucei
N-Acetyltransferase (Tb11.01.2886) At 1.86a
pdb|3I3G|B Chain B, Crystal Structure Of Trypanosoma Brucei
N-Acetyltransferase (Tb11.01.2886) At 1.86a
Length = 161
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 180 IWDVLVDPSYQGQGLGKALVEKVVRALLQKDIGNISLFADSQVVDFYRNLGF 231
I DV+VDPSY+G GLGKAL+ + K + L + + + FY LGF
Sbjct: 99 IEDVVVDPSYRGAGLGKALIMDLCEISRSKGCYKVILDSSEKSLPFYEKLGF 150
>pdb|2FE7|A Chain A, The Crystal Structure Of A Probable N-Acetyltransferase
From Pseudomonas Aeruginosa
pdb|2FE7|B Chain B, The Crystal Structure Of A Probable N-Acetyltransferase
From Pseudomonas Aeruginosa
Length = 166
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 16/113 (14%)
Query: 143 LVATLHSIRKSPGSEGNEQRTLIGMARAT----SDHAFNATIW---------DVLVDPSY 189
+V + IR+S +EG+ R L+ ++ + ++ + W D+ V P Y
Sbjct: 41 VVTDVEGIRRSLFAEGSPTRALMCLSEGRPIGYAVFFYSYSTWLGRNGIYLEDLYVTPEY 100
Query: 190 QGQGLGKALVEKVVRALLQKDIGNIS---LFADSQVVDFYRNLGFEPDPEGIK 239
+G G G+ L+ ++ R + D G + L + +DFYR++G P E ++
Sbjct: 101 RGVGAGRRLLRELAREAVANDCGRLEWSVLDWNQPAIDFYRSIGALPQDEWVR 153
>pdb|1I12|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
Length = 160
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 180 IWDVLVDPSYQGQGLGKALVEKVVRALLQKDIGNISLFADSQVVDFYRNLGF 231
I D+ V+ YQGQGLGK L++++V I L D + V FY GF
Sbjct: 98 IEDIAVNSKYQGQGLGKLLIDQLVTIGFDYGCYKIILDCDEKNVKFYEKCGF 149
>pdb|1I1D|A Chain A, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|B Chain B, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|C Chain C, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|D Chain D, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
Length = 161
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 180 IWDVLVDPSYQGQGLGKALVEKVVRALLQKDIGNISLFADSQVVDFYRNLGF 231
I D+ V+ YQGQGLGK L++++V I L D + V FY GF
Sbjct: 99 IEDIAVNSKYQGQGLGKLLIDQLVTIGFDYGCYKIILDCDEKNVKFYEKCGF 150
>pdb|1I21|A Chain A, Crystal Structure Of Yeast Gna1
pdb|1I21|B Chain B, Crystal Structure Of Yeast Gna1
pdb|1I21|M Chain M, Crystal Structure Of Yeast Gna1
pdb|1I21|N Chain N, Crystal Structure Of Yeast Gna1
pdb|1I21|X Chain X, Crystal Structure Of Yeast Gna1
pdb|1I21|Y Chain Y, Crystal Structure Of Yeast Gna1
Length = 159
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 180 IWDVLVDPSYQGQGLGKALVEKVVRALLQKDIGNISLFADSQVVDFYRNLGF 231
I D+ V+ YQGQGLGK L++++V I L D + V FY GF
Sbjct: 97 IEDIAVNSKYQGQGLGKLLIDQLVTIGFDYGCYKIILDCDEKNVKFYEKCGF 148
>pdb|1Y7R|A Chain A, 1.7 A Crystal Structure Of Protein Of Unknown Function
Sa2161 From Meticillin-Resistant Staphylococcus Aureus,
Probable Acetyltransferase
pdb|1Y7R|B Chain B, 1.7 A Crystal Structure Of Protein Of Unknown Function
Sa2161 From Meticillin-Resistant Staphylococcus Aureus,
Probable Acetyltransferase
Length = 133
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 18/115 (15%)
Query: 130 PLSKLAA--ALKNSYLVATLHSIRKSPGSEGNEQRTLIGMARATSDHAFNATIWDVLVDP 187
P ++ AA L N+ TL+ ++ LIG R D I D+ V
Sbjct: 25 PKTREAAEKGLPNALFTVTLY-----------DKDRLIGXGRVIGDGGTVFQIVDIAVLK 73
Query: 188 SYQGQGLGKALVEKVVRALLQKDIGN--ISLFADSQVVDFYRNLGF---EPDPEG 237
SYQGQ G + E + + + + + +SL AD Y GF EPD G
Sbjct: 74 SYQGQAYGSLIXEHIXKYIKNVSVESVYVSLIADYPADKLYVKFGFXPTEPDSGG 128
>pdb|1Z4E|A Chain A, Crystal Structure Of Transcriptional Regulator From
Bacillus Halodurans C-125
pdb|1Z4E|B Chain B, Crystal Structure Of Transcriptional Regulator From
Bacillus Halodurans C-125
Length = 153
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 175 AFNATIWDVLVDPSYQGQGLGKALVEKVVRALLQKDIGNISLFADSQVVD---FYRNLGF 231
++ ATI V + +GQG+G LV + ++ I L D Q D FY LGF
Sbjct: 83 SWRATIEGVRTHSAARGQGIGSQLVCWAIERAKERGCHLIQLTTDKQRPDALRFYEQLGF 142
Query: 232 EPDPEGIKGMF 242
+ EG+K F
Sbjct: 143 KASHEGLKMHF 153
>pdb|2CNM|A Chain A, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With A Bisubstrate Inhibitor (Cterm-Arg-Arg-Phe-
Tyr-Arg-Ala-N-Alpha-Acetyl-S-Coa).
pdb|2CNM|B Chain B, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With A Bisubstrate Inhibitor (Cterm-Arg-Arg-Phe-
Tyr-Arg-Ala-N-Alpha-Acetyl-S-Coa).
pdb|2CNM|C Chain C, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With A Bisubstrate Inhibitor (Cterm-Arg-Arg-Phe-
Tyr-Arg-Ala-N-Alpha-Acetyl-S-Coa).
pdb|2CNS|A Chain A, Rimi - Ribosomal S18 N-alpha-protein Acetyltransferase In
Complex With Acetylcoa.
pdb|2CNS|B Chain B, Rimi - Ribosomal S18 N-alpha-protein Acetyltransferase In
Complex With Acetylcoa.
pdb|2CNS|C Chain C, Rimi - Ribosomal S18 N-alpha-protein Acetyltransferase In
Complex With Acetylcoa.
pdb|2CNT|A Chain A, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With Coenzymea.
pdb|2CNT|B Chain B, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With Coenzymea.
pdb|2CNT|C Chain C, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With Coenzymea.
pdb|2CNT|D Chain D, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With Coenzymea
Length = 160
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 178 ATIWDVLVDPSYQGQGLGKALVEKVVRALLQKDIGNISL---FADSQVVDFYRNLGF 231
AT++++ VDP +Q +GLG+ L+E ++ L + + + L +++ + Y +LGF
Sbjct: 64 ATLFNIAVDPDFQRRGLGRMLLEHLIDELETRGVVTLWLEVRASNAAAIALYESLGF 120
>pdb|2ATR|A Chain A, Acetyltransferase, Gnat Family Protein Sp0256 From
Streptococcus Pneumoniae Tigr4
Length = 138
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%)
Query: 164 LIGMARATSDHAFNATIWDVLVDPSYQGQGLGKALVEKVVRALLQKDIGNISLFADSQVV 223
++G+ R D + + D++V PSYQ QG+G +L ++ + + ++ + V
Sbjct: 53 VVGLIRLVGDGFSSVFVQDLIVLPSYQRQGIGSSLXKEALGNFKEAYQVQLATEETEKNV 112
Query: 224 DFYRNLGFE 232
FYR+ GFE
Sbjct: 113 GFYRSXGFE 121
>pdb|2OZH|A Chain A, Crystal Structure Of A Putative Acetyltransferase
Belonging To The Gnat Family (Xcc2953) From Xanthomonas
Campestris Pv. Campestris At 1.40 A Resolution
Length = 142
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 165 IGMARATSDHAFNATIWDVLVDPSYQGQGLGKALVEKVVRALLQKDIGNISLFADSQVVD 224
+ AR SD+A A + DV V P ++G+G KAL + V + + SL A S
Sbjct: 57 VAFARVISDYATFAYLGDVFVLPEHRGRGYSKALXDAVXAHPDLQGLRRFSL-ATSDAHG 115
Query: 225 FYRNLGFEP 233
Y GF P
Sbjct: 116 LYARYGFTP 124
>pdb|3S6F|A Chain A, Crystal Structure Of A Hypotetical Acetyltransferase
(Dr_1678) From Deinococcus Radiodurans At 1.19 A
Resolution
Length = 145
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 11/108 (10%)
Query: 125 GWPRRPLSKLAAALKNSYLVATLHSIRKSPGSEGNEQRTLIGMARATSDHAFNATIWDVL 184
GWP P + + + A + + ++P + +IG A SD A+I +
Sbjct: 30 GWPNPPTPETLWRILDR---AAVFVLARTPDGQ------VIGFVNALSDGILAASIPLLE 80
Query: 185 VDPSYQGQGLGKALVEKVVRALLQKDIGNISLFADSQVVDFYRNLGFE 232
V ++ GLG L +V+ L D+ + L D VV FY LG +
Sbjct: 81 VQAGWRSLGLGSELXRRVLTEL--GDLYXVDLSCDDDVVPFYERLGLK 126
>pdb|1WK4|A Chain A, Crystal Structure Of Ttk003001606
pdb|1WK4|B Chain B, Crystal Structure Of Ttk003001606
pdb|1WK4|C Chain C, Crystal Structure Of Ttk003001606
pdb|2CY2|A Chain A, Crystal Structure Of Ttha1209 In Complex With Acetyl
Coenzyme A
Length = 174
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 165 IGMARATSDHAFNATIWDVLVDPSYQGQGLGKALVEKVVRALLQKDIGNISLFA---DSQ 221
G RA+ + A +W + V P++Q +GLG+AL + R L + G ++ + +
Sbjct: 76 FGPDRASGFPGYTAELWAIYVLPTWQRKGLGRALFHEGARLLQAEGYGRXLVWVLKENPK 135
Query: 222 VVDFYRNLG 230
FY +LG
Sbjct: 136 GRGFYEHLG 144
>pdb|2BEI|A Chain A, X-Ray Structure Of Thialysine N-Acetyltransferase (Ssat2)
From Homo Sapiens
pdb|2BEI|B Chain B, X-Ray Structure Of Thialysine N-Acetyltransferase (Ssat2)
From Homo Sapiens
pdb|2Q4V|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Thialysine N- Acetyltransferase (Ssat2) From Homo
Sapiens
pdb|2Q4V|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Thialysine N- Acetyltransferase (Ssat2) From Homo
Sapiens
Length = 170
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 182 DVLVDPSYQGQGLGKALVEKVVRALLQKDIGNISLFA---DSQVVDFYRNLGFE--PDPE 236
D+ V P Y+GQG+G +++KV L K L + + D Y+ LG + + E
Sbjct: 93 DIYVXPEYRGQGIGSKIIKKVAEVALDKGCSQFRLAVLDWNQRAXDLYKALGAQDLTEAE 152
Query: 237 GIKGMFWH 244
G WH
Sbjct: 153 G-----WH 155
>pdb|2FL4|A Chain A, The Crystal Structure Of The SpermineSPERMIDINE
ACETYLTRANSFERASE From Enterococcus Faecalis
Length = 149
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 184 LVDPSYQGQGLGKALVEKVVRALLQKDIGN---ISLF-ADSQVVDFYRNLGF----EPDP 235
L+D +QGQG GKA ++ L++K N +S++ +S + Y+ LGF E D
Sbjct: 77 LIDQRFQGQGYGKAACRLLMLKLIEKYQTNKLYLSVYDTNSSAIRLYQQLGFVFNGELDT 136
Query: 236 EGIKGMFW 243
G + M W
Sbjct: 137 NGERVMEW 144
>pdb|1TIQ|A Chain A, Crystal Structure Of An Acetyltransferase (Paia) In
Complex With Coa And Dtt From Bacillus Subtilis,
Northeast Structural Genomics Target Sr64.
pdb|1TIQ|B Chain B, Crystal Structure Of An Acetyltransferase (Paia) In
Complex With Coa And Dtt From Bacillus Subtilis,
Northeast Structural Genomics Target Sr64
Length = 180
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 165 IGMARATSDHAFNATIWDVLVDPSYQGQGLGKALVEKVVRALLQKDIGNISL---FADSQ 221
I A++ A + I + + S+Q GLGK L+ K + L+++ NI L +
Sbjct: 78 IDDAQSEEXGAESLEIERIYIKNSFQKHGLGKHLLNKAIEIALERNKKNIWLGVWEKNEN 137
Query: 222 VVDFYRNLGF 231
+ FY+ GF
Sbjct: 138 AIAFYKKXGF 147
>pdb|2Q0Y|A Chain A, Crystal Structure Of Gcn5-Related N-Acetyltransferase
(Yp_295895.1) From Ralstonia Eutropha Jmp134 At 1.80 A
Resolution
Length = 153
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 180 IWDVLVDPSYQGQGLGKALVEKVVRALLQKDIGNISLFADSQVVDFYRNLGFEPDPEGIK 239
I ++ VDPS++ +G+G+AL + ++ I L A Y G+ P E K
Sbjct: 90 ILNLYVDPSHRERGIGQALXNRAEAEFAERGIAFAVLHATEXGQPLYARXGWSPTTEXSK 149
>pdb|4AG7|A Chain A, C. Elegans Glucosamine-6-Phosphate N-Acetyltransferase
(Gna1): Coenzyme A Adduct
pdb|4AG7|B Chain B, C. Elegans Glucosamine-6-Phosphate N-Acetyltransferase
(Gna1): Coenzyme A Adduct
pdb|4AG9|A Chain A, C. Elegans Glucosamine-6-Phosphate N-Acetyltransferase
(Gna1): Ternary Complex With Coenzyme A And Glcnac
pdb|4AG9|B Chain B, C. Elegans Glucosamine-6-Phosphate N-Acetyltransferase
(Gna1): Ternary Complex With Coenzyme A And Glcnac
Length = 165
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 180 IWDVLVDPSYQGQGLGKALVEKVVRALLQKDIG--NISLFADSQVVDFYRNLGFEPD 234
+ DV+VD + Q LG L++ +V L K +G ISL +++ FY GF+ D
Sbjct: 103 VEDVVVDTEMRRQKLGAVLLKTLVS--LGKSLGVYKISLECVPELLPFYSQFGFQDD 157
>pdb|2OZG|A Chain A, Crystal Structure Of Gcn5-Related N-Acetyltransferase
(Yp_325469.1) From Anabaena Variabilis Atcc 29413 At
2.00 A Resolution
Length = 396
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 178 ATIWDVLVDPSYQGQGLGKALVEKVVRALLQKDIGNISLFADSQVVDFYRNLGFE 232
A I V + P Y+G G AL++ ++ + ++DI L+ +Q YR G+E
Sbjct: 80 AGIAAVGIAPEYRGDGAAIALIQHTLQEISEQDIPISVLYPATQ--RLYRKAGYE 132
>pdb|2GAN|A Chain A, Crystal Structure Of A Putative Acetyltransferase From
Pyrococcus Horikoshii, Northeast Structural Genomics
Target Jr32.
pdb|2GAN|B Chain B, Crystal Structure Of A Putative Acetyltransferase From
Pyrococcus Horikoshii, Northeast Structural Genomics
Target Jr32
Length = 190
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 7/42 (16%)
Query: 184 LVDPSYQGQGLGKALVEKVVRALLQKDIGNISLFADSQVVDF 225
+VDP +QG+G+G L+E V+ L SL D VV F
Sbjct: 113 VVDPEFQGKGIGSTLLEFAVKRLR-------SLGKDPYVVTF 147
>pdb|3GY9|A Chain A, Crystal Structure Of Putative Acetyltransferase
(Yp_001815201.1) From Exiguobacterium Sp. 255-15 At 1.52
A Resolution
pdb|3GYA|A Chain A, Crystal Structure Of Putative Acetyltransferase
(Yp_001815201.1) From Exiguobacterium Sp. 255-15 At 1.62
A Resolution
Length = 150
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 172 SDHAFNATIWDVLVDPSYQGQGLGKALVEKVV-RALLQKDIGNISLFADSQVVDFYRNLG 230
S A I V V P + G+G AL+EK+ A L D + L+++ Q FY+ LG
Sbjct: 71 SGQARTGRIRHVYVLPEARSHGIGTALLEKIXSEAFLTYD--RLVLYSE-QADPFYQGLG 127
Query: 231 FE 232
F+
Sbjct: 128 FQ 129
>pdb|3D8P|A Chain A, Crystal Structure Of Acetyltransferase Of Gnat Family
(Np_373092.1) From Staphylococcus Aureus Mu50 At 2.20 A
Resolution
pdb|3D8P|B Chain B, Crystal Structure Of Acetyltransferase Of Gnat Family
(Np_373092.1) From Staphylococcus Aureus Mu50 At 2.20 A
Resolution
Length = 163
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 165 IGMARATSDHAFNATIWDVLVDPSYQGQGLGKALVEKVVRALLQKDI-----GNISLFAD 219
IG+ R ++ + + VD Y+ +GK L++KV+ +++I G I F
Sbjct: 69 IGLIRLDNNXS---ALKKXFVDKGYRNLKIGKKLLDKVIXTCKEQNIDGIYLGTIDKFIS 125
Query: 220 SQVVDFYRNLGFEPDPEG 237
+Q FY N GF G
Sbjct: 126 AQY--FYSNNGFREIKRG 141
>pdb|2KCW|A Chain A, Solution Structure Of Apo-Form Yjab From Escherichia Coli
Length = 147
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 183 VLVDPSYQGQGLGKALVEKVVRALLQKDIGNISLFADSQVVDFYRNLGFE 232
+ +DP +G G+G+ LVE + ++ + N++ + Q V FY+ +GF+
Sbjct: 76 LFIDPDVRGCGVGRVLVEHAL-SMAPELTTNVNE-QNEQAVGFYKKVGFK 123
>pdb|2OU2|A Chain A, Acetyltransferase Domain Of Human Hiv-1 Tat Interacting
Protein, 60kda, Isoform 3
Length = 280
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 115 YELQTLCDKVGWPRRPLSKLAAALKNSYLVATLHSIRKSPGSEGNE--QRTLIGMARATS 172
YEL + K G P +PLS L SY T+ I SE E Q T+ ++ TS
Sbjct: 164 YELSKVEGKTGTPEKPLSDLGLLSYRSYWSQTILEILMGLKSESGERPQITINEISEITS 223
Query: 173 --DHAFNATIWDVLVDPSYQGQ---GLGKALVEKVVRALLQKDIGNISLFADSQVVDF 225
+T+ + + Y+GQ L + +V+ RA+L++ L DS+ + F
Sbjct: 224 IKKEDVISTLQYLNLINYYKGQYILTLSEDIVDGHERAMLKR-----LLRIDSKCLHF 276
>pdb|2PR1|A Chain A, Crystal Structure Of The Bacillus Subtilis
N-Acetyltransferase Ylbp Protein In Complex With
Coenzyme-A
pdb|2PR1|B Chain B, Crystal Structure Of The Bacillus Subtilis
N-Acetyltransferase Ylbp Protein In Complex With
Coenzyme-A
Length = 163
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 180 IWDVLVDPSYQGQGLGKALVE 200
+W + V P YQ +G G+ALVE
Sbjct: 85 LWKLEVLPGYQNRGYGRALVE 105
>pdb|1RHD|A Chain A, Structure Of Bovine Liver Rhodanese. I. Structure
Determination At 2.5 Angstroms Resolution And A
Comparison Of The Conformation And Sequence Of Its Two
Domains
Length = 293
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 184 LVDPSYQGQGLGKALVEKVVRALLQKDIGNISLFADSQVVDFYRNLGFEPDPEGIKGMF 242
LVD QG+ LG V D G+I + +DF GFE PE ++ MF
Sbjct: 178 LVDSRAQGRYLGTQPEPDAVGL----DSGHIRGSVNMPFMDFLTENGFEKSPEELRAMF 232
>pdb|2C27|A Chain A, The Structure Of Mycothiol Synthase In Complex With Des-
Acetylmycothiol And Coenzymea
Length = 315
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 67/162 (41%), Gaps = 30/162 (18%)
Query: 93 EKTQPDGVIEQIIFSSGGDVDVYELQTLC-----DKVGWPRRPLSKLAAAL---KNSYLV 144
E T PDGV+ + + D ++ + ++ GW L++ + ++
Sbjct: 145 EPTIPDGVVIRTYAGTSDDAELLRVNNAAFAGHPEQGGWTAVQLAERRGEAWFDPDGLIL 204
Query: 145 ATLHSIRKSPGSEGNEQRTLIGM--ARATSDHAFNATIWDVLVDPSYQGQGLGKALVEKV 202
A S R+ PG L+G + DH ++ + VDP+ Q +GLG+ L
Sbjct: 205 AFGDSPRERPGR-------LLGFHWTKVHPDHPGLGEVYVLGVDPAAQRRGLGQMLTSIG 257
Query: 203 VRALLQKDIGN----------ISLFADSQ---VVDFYRNLGF 231
+ +L ++ G + L+ +S V Y++LGF
Sbjct: 258 IVSLARRLGGRKTLDPAVEPAVLLYVESDNVAAVRTYQSLGF 299
>pdb|1OZP|A Chain A, Crystal Structure Of Rv0819 From Mycobacterium
Tuberculosis Mshd- Mycothiol Synthase Acetyl-Coenzyme A
Complex.
pdb|1P0H|A Chain A, Crystal Structure Of Rv0819 From Mycobacterium
Tuberculosis Mshd- Mycothiol Synthase Coenzyme A Complex
Length = 318
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 67/162 (41%), Gaps = 30/162 (18%)
Query: 93 EKTQPDGVIEQIIFSSGGDVDVYELQTLC-----DKVGWPRRPLSKLAAAL---KNSYLV 144
E T PDGV+ + + D ++ + ++ GW L++ + ++
Sbjct: 148 EPTIPDGVVIRTYAGTSDDAELLRVNNAAFAGHPEQGGWTAVQLAERRGEAWFDPDGLIL 207
Query: 145 ATLHSIRKSPGSEGNEQRTLIGM--ARATSDHAFNATIWDVLVDPSYQGQGLGKALVEKV 202
A S R+ PG L+G + DH ++ + VDP+ Q +GLG+ L
Sbjct: 208 AFGDSPRERPGR-------LLGFHWTKVHPDHPGLGEVYVLGVDPAAQRRGLGQMLTSIG 260
Query: 203 VRALLQKDIGN----------ISLFADSQ---VVDFYRNLGF 231
+ +L ++ G + L+ +S V Y++LGF
Sbjct: 261 IVSLARRLGGRKTLDPAVEPAVLLYVESDNVAAVRTYQSLGF 302
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,679,990
Number of Sequences: 62578
Number of extensions: 236313
Number of successful extensions: 691
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 670
Number of HSP's gapped (non-prelim): 30
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)