Query 025841
Match_columns 247
No_of_seqs 157 out of 468
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 10:09:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025841.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025841hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0324 Uncharacterized conser 100.0 4.9E-61 1.1E-65 422.5 14.6 197 39-237 12-214 (214)
2 PF05903 Peptidase_C97: PPPDE 100.0 3.3E-46 7.1E-51 312.4 9.0 136 41-176 1-149 (151)
3 PF04970 LRAT: Lecithin retino 94.7 0.028 6E-07 45.1 2.9 37 108-147 82-119 (125)
4 PF05608 DUF778: Protein of un 92.3 0.36 7.9E-06 40.8 5.7 40 113-152 75-114 (136)
5 PF09601 DUF2459: Protein of u 65.7 7.5 0.00016 33.7 3.6 41 111-152 97-160 (173)
6 PF13387 DUF4105: Domain of un 52.1 19 0.0004 30.7 3.6 54 104-157 97-154 (176)
7 PF08405 Calici_PP_N: Viral po 51.4 23 0.00051 34.3 4.5 93 63-172 21-119 (358)
8 PF11022 DUF2611: Protein of u 34.2 25 0.00055 26.8 1.5 30 151-180 7-36 (71)
9 cd01781 AF6_RA_repeat2 Ubiquit 32.7 91 0.002 25.3 4.5 51 87-138 2-54 (100)
10 KOG3150 Uncharacterized conser 29.9 1E+02 0.0022 27.4 4.7 40 113-152 91-130 (182)
11 PF11931 DUF3449: Domain of un 29.3 18 0.00039 32.4 0.0 21 152-172 84-104 (196)
12 PF15643 Tox-PL-2: Papain fold 27.7 48 0.001 27.0 2.1 46 113-165 1-46 (100)
13 cd02998 PDI_a_ERp38 PDIa famil 25.4 31 0.00066 25.1 0.6 47 114-160 33-80 (105)
14 PF04046 PSP: PSP; InterPro: 25.0 59 0.0013 23.1 2.0 25 143-167 5-31 (48)
15 PF13964 Kelch_6: Kelch motif 23.9 69 0.0015 21.1 2.1 20 64-83 3-22 (50)
16 smart00581 PSP proline-rich do 22.4 69 0.0015 23.3 1.9 24 144-167 10-35 (54)
17 PF12419 DUF3670: SNF2 Helicas 22.1 1E+02 0.0022 25.5 3.3 25 99-123 71-95 (141)
18 PF04412 DUF521: Protein of un 22.0 88 0.0019 30.8 3.2 46 109-155 267-316 (400)
19 PF01288 HPPK: 7,8-dihydro-6-h 20.7 1.5E+02 0.0033 24.1 3.9 42 86-127 34-76 (127)
No 1
>KOG0324 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.9e-61 Score=422.46 Aligned_cols=197 Identities=51% Similarity=0.915 Sum_probs=185.0
Q ss_pred CCccEEEEEEeCCCCccccccccceeEeeeEEEeCeEEEecccCCCCCCeEEecCCCCCCCCeeEEEEecCeeCCHHHHH
Q 025841 39 GRAPVYLNVYDLTPMNGYVHWAGLGIYHSGVEVHGVEYAFGAHDYPTSGVFEVEPRLCPGFKFRKSIFIGTTCLDPIQVR 118 (247)
Q Consensus 39 ~~~~V~LnVYDLs~~n~~~~~lGlGIyHTGVeV~G~EY~FG~h~~~~sGIf~~~P~~~pg~~fresI~LG~T~lt~~ev~ 118 (247)
...+|+|||||+++.|.|++|+|+|||||||||||+||+||+|+++.+|||+++|++||+++||++|.||.|++++++|+
T Consensus 12 ~~~~v~lnvyd~~~~n~y~~~lGlGIfHSgIeV~g~EyayG~h~~~~sGIfe~~P~~~~~f~fr~sI~lG~Td~~~~~v~ 91 (214)
T KOG0324|consen 12 GRVPVYLNVYDLTPINKYLYWLGLGIFHSGIEVHGVEYAYGAHEYPSSGIFEVEPGNCPEFTFRKSILLGSTDLTEDDVR 91 (214)
T ss_pred cceeeeeeeecceehhhhhhhhcceeEeeeEEEeceeeeccccccCCCCeEeeCCCCCCCCceeEEEEecCCCCCHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCCCccccccchHHHHHHHHccCCCCChhHHhhhhhh--ccccccCccceeecCCCCCCC----CCCC
Q 025841 119 EFMERQSAHYNGDTYHLIVKNCNHFCKDICYKLTGKPIPKWVNRLAKIG--SVCNCVLPEALKISAVRHDPN----YQPI 192 (247)
Q Consensus 119 ~~l~~L~~~f~g~tYhLl~rNCNHFS~elc~~L~Gk~IP~wVnRLa~iG--~~~~clLP~~l~~~~v~~~~~----~~~~ 192 (247)
+||++|+++|+|++||||.||||||||++|++|+|++||+||||||++| ++|+|++|.....+++...+. ..+.
T Consensus 92 ~~le~L~~ey~G~~YhL~~kNCNHFsn~la~~Ltgk~IP~winrLa~~~~~~~~~~~~p~~~~~t~~~~~~~~~~~~~~~ 171 (214)
T KOG0324|consen 92 RILEELSEEYRGNSYHLLTKNCNHFSNELALQLTGKKIPSWVNRLARAGLCSLCNCLLPMLQNLTPVVLASSVVERFDEE 171 (214)
T ss_pred HHHHHHHhhcCCceehhhhhccchhHHHHHHHHcCCCccHHHHHHHHHhhhhHHhhcchhhhcCCccccccccccccCcc
Confidence 9999999999999999999999999999999999999999999999999 899999999888888776554 3456
Q ss_pred ChhhhhhcccccccccceecccccccccccccCCCCCCCCchhhh
Q 025841 193 DSDKRRLRSAFSCLSSISMRQKQLSTSSLLLQSPLKGCLPSWELR 237 (247)
Q Consensus 193 ~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (247)
+.++++++|..+ ++.++++...+++++++.+.-.++...|.++
T Consensus 172 ~~~~~~~~s~~s--~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~ 214 (214)
T KOG0324|consen 172 ENSKKKLASSGS--PSRSAPLLSASDSGLILLSGPSLKRERNTLK 214 (214)
T ss_pred ccccccccccCC--CcccCCCCCcCcCccccccCccccccccccC
Confidence 666889999999 9999999999999999999988888777653
No 2
>PF05903 Peptidase_C97: PPPDE putative peptidase domain; InterPro: IPR008580 This domain consists of the N-terminal portion of several eukaryotic sequences. The function of this domain is unknown.; PDB: 2WP7_A 3EBQ_A.
Probab=100.00 E-value=3.3e-46 Score=312.43 Aligned_cols=136 Identities=53% Similarity=0.978 Sum_probs=104.7
Q ss_pred ccEEEEEEeCCCCcc------ccccccc---eeEeeeEEEeCeEEEecccCCCCCCeEEecCCC-CCCCCeeEEEEecCe
Q 025841 41 APVYLNVYDLTPMNG------YVHWAGL---GIYHSGVEVHGVEYAFGAHDYPTSGVFEVEPRL-CPGFKFRKSIFIGTT 110 (247)
Q Consensus 41 ~~V~LnVYDLs~~n~------~~~~lGl---GIyHTGVeV~G~EY~FG~h~~~~sGIf~~~P~~-~pg~~fresI~LG~T 110 (247)
.+|+||||||++.|. +..++|. |||||||||+|+||+||+|+.+.+||+++.|++ .++++|+++|.||+|
T Consensus 1 h~V~L~vYDL~~~~~~~~~~~~~~~lG~~~~Gi~HtgV~v~G~Ey~fg~~~~~~~GI~~~~P~~~~~~~~~~~~i~lG~T 80 (151)
T PF05903_consen 1 HPVYLNVYDLSPINNGMARQLSLMWLGLQIDGIYHTGVEVYGKEYAFGGHDDPDSGIFECPPGHTSPGGTPRESIELGET 80 (151)
T ss_dssp -EEEEEEEETT---TTHHHHHHHHHCSS-----EEEEEEETTEEEEEET-----TECEEESTT-STT--S-SEEEEEEEE
T ss_pred CeEEEEEEECccccchhHHHhhHhhhCCccCceEEEEEEEccEEEEecccccccCcceEccCcCCCCCcceEEEEeCCCc
Confidence 379999999997665 4567897 999999999999999999999999999999998 788899999999999
Q ss_pred eCCHHHHHHHHHHhhccCCCCCCCccccccchHHHHHHHHccCCCCChhHHhhhhhhc---cccccCcc
Q 025841 111 CLDPIQVREFMERQSAHYNGDTYHLIVKNCNHFCKDICYKLTGKPIPKWVNRLAKIGS---VCNCVLPE 176 (247)
Q Consensus 111 ~lt~~ev~~~l~~L~~~f~g~tYhLl~rNCNHFS~elc~~L~Gk~IP~wVnRLa~iG~---~~~clLP~ 176 (247)
.+++++|++++++|+++|++++||||.||||||||++|++|+|++||+||||+|+++. +..|++|.
T Consensus 81 ~~~~~~~~~~l~~l~~~~~~~~Y~Ll~~NCNhFs~~l~~~L~g~~iP~~i~~~a~~~~~~p~~~~l~p~ 149 (151)
T PF05903_consen 81 TLSEEEFEEILRSLSREFTGDSYHLLNRNCNHFSDALCQFLTGKPIPSWINRLARIALSSPFGQMLLPM 149 (151)
T ss_dssp ---HHHHHHHHHHHHTT-SGGG-BTTTBSHHHHHHHHHHHHHS----HHHHTHHHHHHTSHHHHHHCC-
T ss_pred cCCHHHHHHHHHHHHhhccCCcchhhhhhhhHHHHHHHHHhCCCCCCHHHHhhhHHhcccchhhhhCcC
Confidence 9999999999999999999999999999999999999999999999999999999886 55777774
No 3
>PF04970 LRAT: Lecithin retinol acyltransferase; InterPro: IPR007053 This entry represents a conserved sequence region found in proteins from viruses, bacteria and eukaryotes. It contains a well-conserved NCEHF motif, though its function in these proteins is unknown.; PDB: 2KYT_A 4DOT_A 4FA0_A.
Probab=94.66 E-value=0.028 Score=45.12 Aligned_cols=37 Identities=24% Similarity=0.481 Sum_probs=18.7
Q ss_pred cCeeCCHHHHHHHHHHh-hccCCCCCCCccccccchHHHHH
Q 025841 108 GTTCLDPIQVREFMERQ-SAHYNGDTYHLIVKNCNHFCKDI 147 (247)
Q Consensus 108 G~T~lt~~ev~~~l~~L-~~~f~g~tYhLl~rNCNHFS~el 147 (247)
.....+++++-+-.+++ ..++ .|||+.+||-||+.-.
T Consensus 82 ~~~~~~~~~iv~rA~~~lg~~~---~Y~l~~nNCEhFa~~c 119 (125)
T PF04970_consen 82 RYKPFPPEEIVERAESRLGKEF---EYNLLFNNCEHFATWC 119 (125)
T ss_dssp TS--S-HHHHHHHHHHTTT-EE---SS---HHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHcCCC---ccCCCcCCHHHHHHHH
Confidence 34455555554443333 3333 8999999999998643
No 4
>PF05608 DUF778: Protein of unknown function (DUF778); InterPro: IPR008496 This family consists of several eukaryotic proteins of unknown function.
Probab=92.26 E-value=0.36 Score=40.82 Aligned_cols=40 Identities=18% Similarity=0.429 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHhhccCCCCCCCccccccchHHHHHHHHcc
Q 025841 113 DPIQVREFMERQSAHYNGDTYHLIVKNCNHFCKDICYKLT 152 (247)
Q Consensus 113 t~~ev~~~l~~L~~~f~g~tYhLl~rNCNHFS~elc~~L~ 152 (247)
+.++..+-|++-.++|....|||+..||.+|.......+.
T Consensus 75 ~~~~wD~Av~~a~~~y~~r~yNlf~~NCHSfVA~aLN~m~ 114 (136)
T PF05608_consen 75 GAESWDDAVQKASEEYKHRMYNLFTDNCHSFVANALNRMR 114 (136)
T ss_pred cHHHHHHHHHHHHHHHhhCceeeeccCcHHHHHHHHHhcc
Confidence 4566777788888999999999999999999887777663
No 5
>PF09601 DUF2459: Protein of unknown function (DUF2459); InterPro: IPR011727 This conserved hypothetical protein of unknown function is predominantly found in proteobacteria. Its function is unknown and its genome context is not well-conserved. It is found amid urease genes in at least one species.
Probab=65.70 E-value=7.5 Score=33.74 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=31.2
Q ss_pred eCCHHHHHHHHHHhhccCCCC-----------------------CCCccccccchHHHHHHHHcc
Q 025841 111 CLDPIQVREFMERQSAHYNGD-----------------------TYHLIVKNCNHFCKDICYKLT 152 (247)
Q Consensus 111 ~lt~~ev~~~l~~L~~~f~g~-----------------------tYhLl~rNCNHFS~elc~~L~ 152 (247)
.+++++++++++.++..|.-+ +|||+ ++||+-+++..+...
T Consensus 97 ~ls~~~y~~L~~~I~~sf~~~~~g~~~~i~~~y~~~d~Fy~A~G~Y~l~-~TCNtWta~~L~aaG 160 (173)
T PF09601_consen 97 RLSEAQYRRLVAFIRASFQRDADGRPIPIGPGYGPDDAFYEAKGRYSLF-NTCNTWTARALKAAG 160 (173)
T ss_pred EcCHHHHHHHHHHHHHHhccCCCCCeEEeccccCCCCeeEeeccceEee-cCcHHHHHHHHHHcC
Confidence 688999999998876655543 46644 799999999887653
No 6
>PF13387 DUF4105: Domain of unknown function (DUF4105)
Probab=52.14 E-value=19 Score=30.71 Aligned_cols=54 Identities=15% Similarity=0.265 Sum_probs=41.5
Q ss_pred EEEecCeeCCHHHHHHHHHHhhcc----CCCCCCCccccccchHHHHHHHHccCCCCC
Q 025841 104 SIFIGTTCLDPIQVREFMERQSAH----YNGDTYHLIVKNCNHFCKDICYKLTGKPIP 157 (247)
Q Consensus 104 sI~LG~T~lt~~ev~~~l~~L~~~----f~g~tYhLl~rNCNHFS~elc~~L~Gk~IP 157 (247)
.|..=...++++|.+.++..|-+. -++-.||.+..||=.-.-++.....++.+|
T Consensus 97 ~v~~y~LnLs~ee~~~l~~~l~e~~~~~~~~~~Y~f~~~NCat~i~~~l~~~~~~~l~ 154 (176)
T PF13387_consen 97 DVWEYPLNLSPEEKQRLFRHLWENANPENRPYRYNFFTDNCATRIRDLLDKARPGSLP 154 (176)
T ss_pred cEEEEEeeCCHHHHHHHHHHHHHhccccccceeehhhhcchHHHHHHHHHHHcCCCee
Confidence 344455689999999988777422 355699999999999998888888876555
No 7
>PF08405 Calici_PP_N: Viral polyprotein N-terminal; InterPro: IPR013614 This domain is found at the N terminus of non-structural viral polyproteins of the Caliciviridae subfamily. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity, 0044419 interspecies interaction between organisms
Probab=51.41 E-value=23 Score=34.25 Aligned_cols=93 Identities=24% Similarity=0.521 Sum_probs=53.5
Q ss_pred eeEeeeEEEeCeEEEecccCCC---CCCeEEecCCCCCCCCeeEEEEecCeeCCHHHHHHHHHHhhccCCCCCCCccccc
Q 025841 63 GIYHSGVEVHGVEYAFGAHDYP---TSGVFEVEPRLCPGFKFRKSIFIGTTCLDPIQVREFMERQSAHYNGDTYHLIVKN 139 (247)
Q Consensus 63 GIyHTGVeV~G~EY~FG~h~~~---~sGIf~~~P~~~pg~~fresI~LG~T~lt~~ev~~~l~~L~~~f~g~tYhLl~rN 139 (247)
-+||-||-|.+ -+.+|-|.-+ +.|-+..+|=..+ +| .+..-+-.++.++++..+ .+.| -|..+.+|
T Consensus 21 ~~yHYaIYi~~-G~~lgvh~p~aai~~a~i~l~~ls~~---WR-vvy~P~~~~~~~~L~~l~---ge~~---PY~a~~nN 89 (358)
T PF08405_consen 21 DIYHYAIYIGK-GLVLGVHSPGAAISIATIELEPLSLW---WR-VVYTPRQRLSYDQLRKLE---GEKF---PYAAFTNN 89 (358)
T ss_pred eeEEEEEEecC-CeEEeecCcchhceeeeEEEeecccc---cc-cccCCCCCCCHHHHHHhc---CCCC---Cchhhccc
Confidence 58999998743 4567766432 2344555554332 23 233333456666654433 2444 48999999
Q ss_pred cchHHHHHHHHccCCCCC-hhHHhh--hhhhccccc
Q 025841 140 CNHFCKDICYKLTGKPIP-KWVNRL--AKIGSVCNC 172 (247)
Q Consensus 140 CNHFS~elc~~L~Gk~IP-~wVnRL--a~iG~~~~c 172 (247)
|=||| |+-|. ++ .|++|- ++-|.|..+
T Consensus 90 Cy~fc---c~vl~---L~D~wl~rr~v~r~~~F~~P 119 (358)
T PF08405_consen 90 CYTFC---CWVLG---LNDSWLKRRLVSRTGPFYHP 119 (358)
T ss_pred hHHHh---HhhcC---CChHHHhhccccccCCCCCC
Confidence 99999 66443 33 366653 244556444
No 8
>PF11022 DUF2611: Protein of unknown function (DUF2611); InterPro: IPR021278 This family is conserved in the Dikarya of Fungi. The function is not known.
Probab=34.18 E-value=25 Score=26.78 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=24.6
Q ss_pred ccCCCCChhHHhhhhhhccccccCccceee
Q 025841 151 LTGKPIPKWVNRLAKIGSVCNCVLPEALKI 180 (247)
Q Consensus 151 L~Gk~IP~wVnRLa~iG~~~~clLP~~l~~ 180 (247)
+.|+.||.+++-++.||+++-.+.+.....
T Consensus 7 I~Gr~V~~H~LAi~tLg~~~~~~~~~~~g~ 36 (71)
T PF11022_consen 7 IFGRQVQSHYLAIATLGTVFGGVYLATSGS 36 (71)
T ss_pred ecccccccchhHHHHHHHHHHHheeccCCC
Confidence 569999999999999999887776655543
No 9
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=32.73 E-value=91 Score=25.26 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=35.8
Q ss_pred CeEEecCCCC-CCCCeeEEEEecCeeCCHHHHHHHHHHhh-ccCCCCCCCcccc
Q 025841 87 GVFEVEPRLC-PGFKFRKSIFIGTTCLDPIQVREFMERQS-AHYNGDTYHLIVK 138 (247)
Q Consensus 87 GIf~~~P~~~-pg~~fresI~LG~T~lt~~ev~~~l~~L~-~~f~g~tYhLl~r 138 (247)
|+..+-|+.. |+..|+ +|.+-.++..++-|.+.|++.. ++-.++.|.|..-
T Consensus 2 G~LKIYg~~L~~~~~YK-SIlvt~~~~a~~vV~eALeKygL~~e~p~~Y~LveV 54 (100)
T cd01781 2 GTLKIYGGSLVPTRPYK-TILLSINDNADRIVGEALEKYGLEKSDPDDYCLVEV 54 (100)
T ss_pred CeEEEcCCcccCCCCeE-EEEecCCccHHHHHHHHHHHhCCCccCccceEEEEE
Confidence 4555555543 555666 9999999999999999998764 4445666666554
No 10
>KOG3150 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.87 E-value=1e+02 Score=27.35 Aligned_cols=40 Identities=13% Similarity=0.271 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHhhccCCCCCCCccccccchHHHHHHHHcc
Q 025841 113 DPIQVREFMERQSAHYNGDTYHLIVKNCNHFCKDICYKLT 152 (247)
Q Consensus 113 t~~ev~~~l~~L~~~f~g~tYhLl~rNCNHFS~elc~~L~ 152 (247)
.+....+.+.+-+++|...+|||+.-||..|-.....++.
T Consensus 91 g~~~wD~Av~~as~~y~hr~hNi~cdNCHShVA~aLn~mr 130 (182)
T KOG3150|consen 91 GARTWDNAVSKASREYKHRTHNIFCDNCHSHVANALNRMR 130 (182)
T ss_pred CCchHHHHHHHHHHHhhhcccceeeccHHHHHHHHHHHhh
Confidence 3456777888889999999999999999999766655554
No 11
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=29.29 E-value=18 Score=32.44 Aligned_cols=21 Identities=43% Similarity=1.024 Sum_probs=0.0
Q ss_pred cCCCCChhHHhhhhhhccccc
Q 025841 152 TGKPIPKWVNRLAKIGSVCNC 172 (247)
Q Consensus 152 ~Gk~IP~wVnRLa~iG~~~~c 172 (247)
-|+|||-|+-.|.-+|.-+.|
T Consensus 84 DGkPIPyWLYKLhGL~~ey~C 104 (196)
T PF11931_consen 84 DGKPIPYWLYKLHGLGVEYKC 104 (196)
T ss_dssp ---------------------
T ss_pred CCCcccHHHHHHhCCCCeeee
Confidence 389999999999999988877
No 12
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=27.66 E-value=48 Score=26.99 Aligned_cols=46 Identities=20% Similarity=0.355 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHhhccCCCCCCCccccccchHHHHHHHHccCCCCChhHHhhhh
Q 025841 113 DPIQVREFMERQSAHYNGDTYHLIVKNCNHFCKDICYKLTGKPIPKWVNRLAK 165 (247)
Q Consensus 113 t~~ev~~~l~~L~~~f~g~tYhLl~rNCNHFS~elc~~L~Gk~IP~wVnRLa~ 165 (247)
++++++..|..++.+|. ---|--|++++.++|.-+.||.-+-+|-.
T Consensus 1 ~~~~~~Q~I~~I~~~f~-------~~qC~~cA~Al~~~L~~~gI~Gk~i~l~T 46 (100)
T PF15643_consen 1 NPAEVRQQIGKIASRFK-------IFQCVECASALKQFLKQAGIPGKIIRLYT 46 (100)
T ss_pred CHHHHHHHHHHhhcccC-------ceehHHHHHHHHHHHHHCCCCceEEEEEe
Confidence 46788889999988874 23599999999999999999998877754
No 13
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=25.42 E-value=31 Score=25.12 Aligned_cols=47 Identities=15% Similarity=0.127 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhhccCCC-CCCCccccccchHHHHHHHHccCCCCChhH
Q 025841 114 PIQVREFMERQSAHYNG-DTYHLIVKNCNHFCKDICYKLTGKPIPKWV 160 (247)
Q Consensus 114 ~~ev~~~l~~L~~~f~g-~tYhLl~rNCNHFS~elc~~L~Gk~IP~wV 160 (247)
-.++...+++++..+.. ..+.+..=||+....++|+.+....+|..+
T Consensus 33 C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~ 80 (105)
T cd02998 33 CKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLK 80 (105)
T ss_pred HHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEE
Confidence 34566677777777763 467888899999767889988888888744
No 14
>PF04046 PSP: PSP; InterPro: IPR006568 PSP is a proline-rich domain of unknown function found in spliceosome associated proteins.
Probab=25.00 E-value=59 Score=23.11 Aligned_cols=25 Identities=20% Similarity=0.574 Sum_probs=20.2
Q ss_pred HHHHHHHHcc--CCCCChhHHhhhhhh
Q 025841 143 FCKDICYKLT--GKPIPKWVNRLAKIG 167 (247)
Q Consensus 143 FS~elc~~L~--Gk~IP~wVnRLa~iG 167 (247)
.|+++-++|. ...+|.||.++.++|
T Consensus 5 lS~~LR~ALg~~~~~~PPwl~~M~~~G 31 (48)
T PF04046_consen 5 LSDELREALGMQENDPPPWLYRMRRLG 31 (48)
T ss_pred cCHHHHHHcCCCCCCCChHHHHHHhcC
Confidence 4677777774 467999999999998
No 15
>PF13964 Kelch_6: Kelch motif
Probab=23.90 E-value=69 Score=21.09 Aligned_cols=20 Identities=45% Similarity=0.547 Sum_probs=16.6
Q ss_pred eEeeeEEEeCeEEEecccCC
Q 025841 64 IYHSGVEVHGVEYAFGAHDY 83 (247)
Q Consensus 64 IyHTGVeV~G~EY~FG~h~~ 83 (247)
..|+.|.+.|.-|.|||...
T Consensus 3 ~~~s~v~~~~~iyv~GG~~~ 22 (50)
T PF13964_consen 3 YGHSAVVVGGKIYVFGGYDN 22 (50)
T ss_pred ccCEEEEECCEEEEECCCCC
Confidence 36888999999999998544
No 16
>smart00581 PSP proline-rich domain in spliceosome associated proteins.
Probab=22.42 E-value=69 Score=23.35 Aligned_cols=24 Identities=21% Similarity=0.540 Sum_probs=19.8
Q ss_pred HHHHHHHcc--CCCCChhHHhhhhhh
Q 025841 144 CKDICYKLT--GKPIPKWVNRLAKIG 167 (247)
Q Consensus 144 S~elc~~L~--Gk~IP~wVnRLa~iG 167 (247)
|+++-++|. ...+|.|+.++.++|
T Consensus 10 S~~LR~ALG~~~~~pPPWl~~Mq~~G 35 (54)
T smart00581 10 SDELREALGLPPGQPPPWLYRMRRLG 35 (54)
T ss_pred CHHHHHHcCCCCCCCChHHHHHHHHC
Confidence 677878774 357999999999998
No 17
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=22.14 E-value=1e+02 Score=25.48 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=22.7
Q ss_pred CCeeEEEEecCeeCCHHHHHHHHHH
Q 025841 99 FKFRKSIFIGTTCLDPIQVREFMER 123 (247)
Q Consensus 99 ~~fresI~LG~T~lt~~ev~~~l~~ 123 (247)
..|+=.+.||...+|++||.++++.
T Consensus 71 ~~f~W~lalGd~~Ls~eEf~~L~~~ 95 (141)
T PF12419_consen 71 LDFDWELALGDEELSEEEFEQLVEQ 95 (141)
T ss_pred hcceEEEEECCEECCHHHHHHHHHc
Confidence 5688899999999999999999984
No 18
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=21.97 E-value=88 Score=30.81 Aligned_cols=46 Identities=17% Similarity=0.377 Sum_probs=37.9
Q ss_pred CeeCCHHHHHHHHHHhhccCCCCCCCccccccchHH----HHHHHHccCCC
Q 025841 109 TTCLDPIQVREFMERQSAHYNGDTYHLIVKNCNHFC----KDICYKLTGKP 155 (247)
Q Consensus 109 ~T~lt~~ev~~~l~~L~~~f~g~tYhLl~rNCNHFS----~elc~~L~Gk~ 155 (247)
+..++.+|+++..+++. .-..+.-|++.=-|+||| .++++.|-|++
T Consensus 267 ~i~i~~~dl~~~~~~l~-~~~~~~~D~V~lGcPH~S~~El~~ia~ll~gr~ 316 (400)
T PF04412_consen 267 RITITDADLEEVYEELN-TAGDEKVDLVALGCPHLSLEELREIAELLEGRK 316 (400)
T ss_pred EEEeCHHHHHHHHHHhc-cCCCCCCCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 45678899999999886 667788999999999999 46777777765
No 19
>PF01288 HPPK: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); InterPro: IPR000550 All organisms require reduced folate cofactors for the synthesis of a variety of metabolites. Most microorganisms must synthesise folate de novo because they lack the active transport system of higher vertebrate cells which allows these organisms to use dietary folates. Enzymes involved in folate biosynthesis are therefore targets for a variety of antimicrobial agents such as trimethoprim or sulphonamides. 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (2.7.6.3 from EC) (HPPK) catalyses the attachment of pyrophosphate to 6-hydroxymethyl-7,8-dihydropterin to form 6-hydroxymethyl-7,8-dihydropteridine pyrophosphate. This is the first step in a three-step pathway leading to 7,8 dihydrofolate. Bacterial HPPK (gene folK or sulD) [] is a protein of 160 to 270 amino acids. In the lower eukaryote Pneumocystis carinii, HPPK is the central domain of a multifunctional folate synthesis enzyme (gene fas) [].; GO: 0003848 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity, 0009396 folic acid-containing compound biosynthetic process; PDB: 2QX0_B 1RU1_B 2F65_A 1RU2_A 1EQ0_A 3ILJ_A 3HSJ_A 3HD1_A 1TMM_B 1RB0_A ....
Probab=20.72 E-value=1.5e+02 Score=24.15 Aligned_cols=42 Identities=19% Similarity=0.370 Sum_probs=29.4
Q ss_pred CCeEEecCCCCCCC-CeeEEEEecCeeCCHHHHHHHHHHhhcc
Q 025841 86 SGVFEVEPRLCPGF-KFRKSIFIGTTCLDPIQVREFMERQSAH 127 (247)
Q Consensus 86 sGIf~~~P~~~pg~-~fresI~LG~T~lt~~ev~~~l~~L~~~ 127 (247)
|-+++++|-...+. .|--.+..+.|.+++.++.+.+..+..+
T Consensus 34 S~~y~t~p~g~~~~~~F~N~v~~~~t~l~~~~ll~~L~~IE~~ 76 (127)
T PF01288_consen 34 SSIYETEPVGFESQPDFLNAVVVLETSLSPEELLDLLKQIERR 76 (127)
T ss_dssp EEEEEE--SSSSSS-CEEEEEEEEEESS-HHHHHHHHHHHHHH
T ss_pred CCCEEECCccCCCCcCeeeeeeeecCCCCHHHHHHHHHHHHHH
Confidence 45677777554443 4888899999999999999998877543
Done!