Query 025841
Match_columns 247
No_of_seqs 157 out of 468
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 18:47:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025841.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025841hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wp7_A PPPDE peptidase domain- 100.0 1.4E-50 4.9E-55 345.2 10.1 138 39-182 5-155 (168)
2 2lkt_A Retinoic acid receptor 91.6 0.068 2.3E-06 41.9 1.8 34 111-147 86-120 (125)
3 4dpz_X HRAS-like suppressor 2; 90.4 0.12 4.3E-06 42.2 2.4 37 110-149 85-122 (137)
4 4dot_A Group XVI phospholipase 90.4 0.16 5.6E-06 41.7 3.0 24 131-157 104-127 (140)
5 1rpq_W Peptide E131; receptor- 22.3 13 0.00045 22.1 -0.6 14 139-152 2-15 (26)
6 1fme_A FSD-EY peptide; beta-BE 19.3 84 0.0029 18.9 2.5 20 106-125 7-26 (28)
7 2wj8_A Nucleoprotein; RNA bind 16.2 82 0.0028 29.4 2.8 32 116-149 286-326 (391)
8 1f9y_A HPPK, protein (6-hydrox 13.5 2.6E+02 0.009 22.8 5.0 39 86-124 37-76 (158)
9 1sn9_A BBAT, tetrameric beta-B 13.0 1.1E+02 0.0036 18.2 1.7 16 128-151 2-17 (26)
10 3qbc_A 2-amino-4-hydroxy-6-hyd 11.9 2.5E+02 0.0087 23.0 4.4 39 86-124 41-80 (161)
No 1
>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A
Probab=100.00 E-value=1.4e-50 Score=345.24 Aligned_cols=138 Identities=28% Similarity=0.462 Sum_probs=126.8
Q ss_pred CCccEEEEEEeCCCCccc-c--ccccc---eeEeeeEEEeCeEEEecccCCCCCCeEEecCCCCCCCCeeEEEEecCeeC
Q 025841 39 GRAPVYLNVYDLTPMNGY-V--HWAGL---GIYHSGVEVHGVEYAFGAHDYPTSGVFEVEPRLCPGFKFRKSIFIGTTCL 112 (247)
Q Consensus 39 ~~~~V~LnVYDLs~~n~~-~--~~lGl---GIyHTGVeV~G~EY~FG~h~~~~sGIf~~~P~~~pg~~fresI~LG~T~l 112 (247)
++++|+||||||+++++. + .|+|. |||||||||||+||+||+ +||+++.|+.++.++||++|.||+|++
T Consensus 5 ~~~~V~LnVYDLs~g~a~~~s~~~lG~~i~Gi~HtgV~V~G~EY~FG~-----~GI~~~~Pg~~~~g~~resi~lG~T~~ 79 (168)
T 2wp7_A 5 NLYPVKLYVYDLSKGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGS-----SGISSCTPGGTLLGPPDSVVDVGNTEV 79 (168)
T ss_dssp CCEEEEEEEEETTTTHHHHHHHHHTSSCCCCCEEEEEEETTEEEEEET-----TEEEEESTTCSTTCSCSEEEEEEEECC
T ss_pred CCcEEEEEEEECChHHHHHhhHHHhCCCcCcEEEEEEEECCEEEEEcC-----CCeEecCCCcCCCCCeEEEEECCCccC
Confidence 458999999999997543 2 47887 999999999999999996 699999999999999999999999999
Q ss_pred CHHHHHHHHHHhhcc-CCCCCCCccccccchHHHHHHHHccCCCCChhHHhhhh------hhccccccCccceeecC
Q 025841 113 DPIQVREFMERQSAH-YNGDTYHLIVKNCNHFCKDICYKLTGKPIPKWVNRLAK------IGSVCNCVLPEALKISA 182 (247)
Q Consensus 113 t~~ev~~~l~~L~~~-f~g~tYhLl~rNCNHFS~elc~~L~Gk~IP~wVnRLa~------iG~~~~clLP~~l~~~~ 182 (247)
++++|++||++|+++ |++++||||.|||||||||+|++|+|++||+||||||+ +|.++.|+|+ .+..++
T Consensus 80 ~~~~~~~~l~~l~~~~~~g~~Y~Ll~~NCNhFs~~l~~~L~gk~IP~wInrl~~~vl~tp~G~~l~~~l~-~~~~~~ 155 (168)
T 2wp7_A 80 TEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDLPSEVLSTPFGQALRPFLD-SIQIQP 155 (168)
T ss_dssp CHHHHHHHHHHHHTTTCSGGGCBTTTBSHHHHHHHHHHHHHSCCCCHHHHTHHHHHHTSHHHHHHHHHHT-TCCCCC
T ss_pred CHHHHHHHHHHhhhccCCcccCchhhhccchhHHHHHHHhcCCCCcHHHHHHHHHHhcCcHHHHHHHHHH-HHhhCC
Confidence 999999999999998 99999999999999999999999999999999999998 7999999994 444443
No 2
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=91.58 E-value=0.068 Score=41.87 Aligned_cols=34 Identities=18% Similarity=0.340 Sum_probs=21.4
Q ss_pred eCCHHHHHH-HHHHhhccCCCCCCCccccccchHHHHH
Q 025841 111 CLDPIQVRE-FMERQSAHYNGDTYHLIVKNCNHFCKDI 147 (247)
Q Consensus 111 ~lt~~ev~~-~l~~L~~~f~g~tYhLl~rNCNHFS~el 147 (247)
.++.+++-+ ....|.+++ .|||+.+||=||+...
T Consensus 86 p~~~~~iv~rA~~~lg~~~---~Y~l~~nNCEHFa~~c 120 (125)
T 2lkt_A 86 PRPVEVIISSAKEMVGQKM---KYSIVSRNCEHFVTQL 120 (125)
T ss_dssp CCCHHHHHHHHHHHTTCEE---CSSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCC---CcCCCccCHHHHHhhh
Confidence 345555433 333334433 6999999999998643
No 3
>4dpz_X HRAS-like suppressor 2; alpha/beta fold, enzyme phospholipid acyltransferase, hydrol transferase; 1.25A {Homo sapiens} PDB: 4fa0_A 2kyt_A
Probab=90.44 E-value=0.12 Score=42.21 Aligned_cols=37 Identities=27% Similarity=0.429 Sum_probs=18.5
Q ss_pred eeCCHHHHHHHHHH-hhccCCCCCCCccccccchHHHHHHH
Q 025841 110 TCLDPIQVREFMER-QSAHYNGDTYHLIVKNCNHFCKDICY 149 (247)
Q Consensus 110 T~lt~~ev~~~l~~-L~~~f~g~tYhLl~rNCNHFS~elc~ 149 (247)
..++.+++.+-.++ +.. -..|+|+.+||.||+.....
T Consensus 85 ~p~~~~~iv~rA~~~lG~---~~~Y~ll~nNCEHFvt~cry 122 (137)
T 4dpz_X 85 TPLPSNKIVKRAEELVGQ---ELPYSLTSDNCEHFVNHLRY 122 (137)
T ss_dssp CCCCHHHHHHHHHHHTTC---EEC-----CHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCC---CcccCcCccChHHHHHHHhc
Confidence 45566664332222 221 24899999999999887543
No 4
>4dot_A Group XVI phospholipase A2; alpha/beta fold, phospholipase/acyltransferase, phosphatidyl phosphatidylethanolamine, membrane, hydrolase; 1.96A {Homo sapiens}
Probab=90.35 E-value=0.16 Score=41.70 Aligned_cols=24 Identities=33% Similarity=0.724 Sum_probs=17.9
Q ss_pred CCCCccccccchHHHHHHHHccCCCCC
Q 025841 131 DTYHLIVKNCNHFCKDICYKLTGKPIP 157 (247)
Q Consensus 131 ~tYhLl~rNCNHFS~elc~~L~Gk~IP 157 (247)
..|+|+.+||-||+..... |+..=
T Consensus 104 ~~Y~ll~nNCEHFvt~cr~---G~~~S 127 (140)
T 4dot_A 104 VLYKLTSENCEHFVNELRY---GVARS 127 (140)
T ss_dssp CSSCCCHHHHHHHHHHHHH---CCC--
T ss_pred ccccccccChHHHHHHHhc---CCccc
Confidence 6999999999999876543 65443
No 5
>1rpq_W Peptide E131; receptor-peptide complex, membrane protein; HET: NAG BMA NDG CIT; 3.00A {Homo sapiens} PDB: 1kco_A
Probab=22.26 E-value=13 Score=22.10 Aligned_cols=14 Identities=43% Similarity=1.153 Sum_probs=10.3
Q ss_pred ccchHHHHHHHHcc
Q 025841 139 NCNHFCKDICYKLT 152 (247)
Q Consensus 139 NCNHFS~elc~~L~ 152 (247)
.|.|||-++-..|+
T Consensus 2 qcphfcyeldyelc 15 (26)
T 1rpq_W 2 QCPHFCYELDYELC 15 (26)
T ss_dssp CCCTHHHHSSSCCS
T ss_pred CCCeeeeecCcccC
Confidence 59999988765554
No 6
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=19.30 E-value=84 Score=18.89 Aligned_cols=20 Identities=25% Similarity=0.546 Sum_probs=16.6
Q ss_pred EecCeeCCHHHHHHHHHHhh
Q 025841 106 FIGTTCLDPIQVREFMERQS 125 (247)
Q Consensus 106 ~LG~T~lt~~ev~~~l~~L~ 125 (247)
+-|.|...+.|+++||+..+
T Consensus 7 ykgrtfrnekelrdfiekfk 26 (28)
T 1fme_A 7 YKGRTFRNEKELRDFIEKFK 26 (28)
T ss_dssp SSSCEECCHHHHHHHHHHCC
T ss_pred hcccccccHHHHHHHHHHhc
Confidence 34889999999999999654
No 7
>2wj8_A Nucleoprotein; RNA binding protein RNA complex, nucleocapsid (N), ribonucleoprotein, respiratory syncytial virus (RSV); 3.29A {Human respiratory syncytial virus astrain long} PDB: 2yhm_A 2yhp_A 2yhq_A
Probab=16.16 E-value=82 Score=29.42 Aligned_cols=32 Identities=19% Similarity=0.397 Sum_probs=21.7
Q ss_pred HHHHHHHHhhccCCCCCCCccc---------cccchHHHHHHH
Q 025841 116 QVREFMERQSAHYNGDTYHLIV---------KNCNHFCKDICY 149 (247)
Q Consensus 116 ev~~~l~~L~~~f~g~tYhLl~---------rNCNHFS~elc~ 149 (247)
||.+++++|..+ ..-|||.. -||+||+.-+.-
T Consensus 286 evy~~~~k~G~E--sG~~Hlr~nPKA~LLSLtncPnFaSVVLG 326 (391)
T 2wj8_A 286 EVYEYAQKLGGE--AGFYHILNNPKASLLSLTQFPHFSSVVLG 326 (391)
T ss_dssp HHHHHHHHHGGG--GGGTTTTTCGGGGGGCSTTCHHHHHHHHH
T ss_pred HHHHHHHHhCcc--chhhhhhhCCcchheecccCCCchhheec
Confidence 566777777643 34466654 599999976643
No 8
>1f9y_A HPPK, protein (6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase); pyrophosphoryl transfer, catalytic mechanism, folate, ternary complex; HET: APC HHR; 0.89A {Escherichia coli} PDB: 1eq0_A 1dy3_A* 1ex8_A* 1eqm_A* 1hka_A 1q0n_A* 1rao_A* 1rb0_A* 2f63_A 2f65_A 3h4a_A* 3ip0_A* 3ud5_A* 3ude_A* 3udv_A* 4f7v_A* 3kue_A 3hd2_A* 1f9h_A* 1g4c_A ...
Probab=13.49 E-value=2.6e+02 Score=22.79 Aligned_cols=39 Identities=15% Similarity=0.144 Sum_probs=29.7
Q ss_pred CCeEEecCCCC-CCCCeeEEEEecCeeCCHHHHHHHHHHh
Q 025841 86 SGVFEVEPRLC-PGFKFRKSIFIGTTCLDPIQVREFMERQ 124 (247)
Q Consensus 86 sGIf~~~P~~~-pg~~fresI~LG~T~lt~~ev~~~l~~L 124 (247)
|.+++++|=.. ..-.|--.+....|.+++.++.+.+.++
T Consensus 37 S~~y~T~P~G~~~q~~FlN~v~~~~T~l~p~~LL~~l~~I 76 (158)
T 1f9y_A 37 SSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRI 76 (158)
T ss_dssp CCCEEECCSSCSSSCCEEEEEEEEEECSCHHHHHHHHHHH
T ss_pred CCeEEeCCCCCCCCCCceEEEEEEEeCCCHHHHHHHHHHH
Confidence 57788887433 3446777888889999999999888765
No 9
>1sn9_A BBAT, tetrameric beta-BETA-alpha mini-protein; protein design, domain swapping, oligomerization, de novo protein; HET: DBZ; 1.20A {Synthetic} SCOP: k.14.1.1 PDB: 1sna_A* 1sne_A* 1xof_B* 1xof_A*
Probab=13.03 E-value=1.1e+02 Score=18.18 Aligned_cols=16 Identities=25% Similarity=0.551 Sum_probs=12.3
Q ss_pred CCCCCCCccccccchHHHHHHHHc
Q 025841 128 YNGDTYHLIVKNCNHFCKDICYKL 151 (247)
Q Consensus 128 f~g~tYhLl~rNCNHFS~elc~~L 151 (247)
|+-.+|| |.|++++.|
T Consensus 2 yripsyd--------fadelakll 17 (26)
T 1sn9_A 2 YRIPSYD--------FADELAKLL 17 (26)
T ss_dssp CCBTTBC--------HHHHHHHHH
T ss_pred CCCCccc--------hHHHHHHHH
Confidence 4556777 999999876
No 10
>3qbc_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; protein-inhibitor complex, ferredoxin-like fold; HET: B55; 1.65A {Staphylococcus aureus}
Probab=11.87 E-value=2.5e+02 Score=23.02 Aligned_cols=39 Identities=21% Similarity=0.130 Sum_probs=29.8
Q ss_pred CCeEEecCCCC-CCCCeeEEEEecCeeCCHHHHHHHHHHh
Q 025841 86 SGVFEVEPRLC-PGFKFRKSIFIGTTCLDPIQVREFMERQ 124 (247)
Q Consensus 86 sGIf~~~P~~~-pg~~fresI~LG~T~lt~~ev~~~l~~L 124 (247)
|.+++++|=.. ..-.|--.+....|.+++.++.+.+.++
T Consensus 41 S~~yeT~P~G~~~q~~FlN~v~~~~T~l~p~~LL~~l~~I 80 (161)
T 3qbc_A 41 SPIYETAPVGYTEQPNFLNLCVEIQTTLTVLQLLECCLKT 80 (161)
T ss_dssp CCCEEECCSSSSSSCCEEEEEEEEEECSCHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCcceEEEEEEEeCCCHHHHHHHHHHH
Confidence 57788887433 2346877888889999999999888765
Done!