BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025842
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F67|A Chain A, Crystal Structure Of Putative Dienelactone Hydrolase From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
Length = 241
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 92/211 (43%), Gaps = 18/211 (8%)
Query: 46 ILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFFY--GDPIVDLNNPQFDREAWRKIHN 103
++++ ++FG + R L ++A G+L +AP+ ++ GDP + P +E K+ +
Sbjct: 35 VIVVQEIFGVHEHI-RDLCRRLAQEGYLAIAPELYFRQGDPNEYHDIPTLFKELVSKVPD 93
Query: 104 TD-KGYVDAKSVIAALKSKGVSAIGAAGFCWGGVVAAKLASSH-DIQAAVVLHPGAITVD 161
+D + AA + GFCWGG + A+ + ++AAV + +
Sbjct: 94 AQVLADLDHVASWAARHGGDAHRLLITGFCWGGRITWLYAAHNPQLKAAVAWYGKLVGEK 153
Query: 162 DINEIKVPVAI---LGAEI-------DHVSPPEDLKRFGEILSAKLKNDCLVKIYPRVSH 211
+N K PV I L A + D P + ++ + L A +V +YP H
Sbjct: 154 SLNSPKHPVDIAVDLNAPVLGLYGAKDASIPQDTVETXRQALRAANATAEIV-VYPEADH 212
Query: 212 GWTVRYNVEDEFAVKSAEEAHEDMINWLTKY 242
+ Y + +SA++ + + W +Y
Sbjct: 213 AFNADYRA--SYHEESAKDGWQRXLAWFAQY 241
>pdb|3VIS|A Chain A, Crystal Structure Of Cutinase Est119 From Thermobifida
Alba Ahk119
pdb|3VIS|B Chain B, Crystal Structure Of Cutinase Est119 From Thermobifida
Alba Ahk119
Length = 306
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 15/122 (12%)
Query: 63 LADKVAGAGFLVVAPDFFYGDPIVDLNNP--QFDREAWRKIHNTDKGYVDAKSVIAALKS 120
L +++A GF+V+A +D N Q D A + D DA S A
Sbjct: 115 LGERIASHGFVVIA---------IDTNTTLDQPDSRARQLNAALDYMLTDASS--AVRNR 163
Query: 121 KGVSAIGAAGFCWGGVVAAKLASSH-DIQAAVVLHPGAITVDDINEIKVPVAILGAEIDH 179
S + G GG +LAS D++AA+ L P + +I VP I+GAE D
Sbjct: 164 IDASRLAVMGHSMGGGGTLRLASQRPDLKAAIPLTPWHLN-KSWRDITVPTLIIGAEYDT 222
Query: 180 VS 181
++
Sbjct: 223 IA 224
>pdb|2W5F|A Chain A, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
With Xylohexaose
pdb|2W5F|B Chain B, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
With Xylohexaose
Length = 540
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 65/140 (46%), Gaps = 13/140 (9%)
Query: 104 TDKGYVDAKSVIAALKSKGVSAIGAAGFCWGGVVAAKLASSHDIQAAVVLHPGAITVDDI 163
T KG +A +V AA + + + A F G V+ + ++ I+A ++ +IT +
Sbjct: 167 TRKGMAEANTVYAA--NAVLKDMYANYFRVGSVLNSGTVNNSSIKALILREFNSITCE-- 222
Query: 164 NEIKVPVAILGAEIDHVSPPEDLKRFGEILSAKLKNDCLVKIYPRVSHGWTVRYNVEDEF 223
NE+K ++ + + + L R IL+ +N+ V+ + V H T ++ +D F
Sbjct: 223 NEMKPDATLVQSGSTNTNIRVSLNRAASILNFCAQNNIAVRGHTLVWHSQTPQWFFKDNF 282
Query: 224 AVKSAEEAHEDMINWLTKYV 243
+D NW+++ V
Sbjct: 283 ---------QDNGNWVSQSV 293
>pdb|4DIU|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or94
Length = 248
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 13/112 (11%)
Query: 43 KSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFF-YGDPIVDLNNPQFDREAWRKI 101
+ A+LL+ G A + R L + G+ AP + +G P L +F EAW
Sbjct: 15 ERAVLLLHGFTGNSADV-RMLGRFLESKGYTCHAPIYSGHGVPPEALT--RFGPEAW--- 68
Query: 102 HNTDKGYVDAKSVIAALKSKGVSAIGAAGFCWGGVVAAKLASSHDIQAAVVL 153
+ D + LK+KG I AG GGV + KL + I+ V +
Sbjct: 69 ------WQDVMNGYEFLKNKGYEKIAVAGLSLGGVFSLKLGYTVPIEGIVTM 114
>pdb|3RPN|A Chain A, Crystal Structure Of Human Kappa Class Glutathione
Transferase In Complex With S-Hexylglutathione
pdb|3RPN|B Chain B, Crystal Structure Of Human Kappa Class Glutathione
Transferase In Complex With S-Hexylglutathione
pdb|3RPN|C Chain C, Crystal Structure Of Human Kappa Class Glutathione
Transferase In Complex With S-Hexylglutathione
pdb|3RPN|D Chain D, Crystal Structure Of Human Kappa Class Glutathione
Transferase In Complex With S-Hexylglutathione
pdb|3RPN|E Chain E, Crystal Structure Of Human Kappa Class Glutathione
Transferase In Complex With S-Hexylglutathione
pdb|3RPN|F Chain F, Crystal Structure Of Human Kappa Class Glutathione
Transferase In Complex With S-Hexylglutathione
pdb|3RPP|A Chain A, Crystal Structure Of Human Kappa Class Glutathione
Transferase In Apo Form
pdb|3RPP|B Chain B, Crystal Structure Of Human Kappa Class Glutathione
Transferase In Apo Form
pdb|3RPP|C Chain C, Crystal Structure Of Human Kappa Class Glutathione
Transferase In Apo Form
Length = 234
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 86 VDLNNPQF----DREAWRKIHNTDKGYVDAKSVIAALKSKGVSAIGAAGFC 132
V+L +P+ RE W ++ + ++ + +S++AA + G+SA A G
Sbjct: 106 VNLEHPEMLEKASRELWMRVWSRNEDITEPQSILAAAEKAGMSAEQAQGLL 156
>pdb|1YZX|A Chain A, Crystal Structure Of Human Kappa Class Glutathione
Transferase
pdb|1YZX|B Chain B, Crystal Structure Of Human Kappa Class Glutathione
Transferase
Length = 226
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 86 VDLNNPQF----DREAWRKIHNTDKGYVDAKSVIAALKSKGVSAIGAAGFC 132
V+L +P+ RE W ++ + ++ + +S++AA + G+SA A G
Sbjct: 106 VNLEHPEMLEKASRELWMRVWSRNEDITEPQSILAAAEKAGMSAEQAQGLL 156
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 11/125 (8%)
Query: 29 GLNTYVTGSGPPDSKSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFFYGDPIVDL 88
G + PPD + ++++ F +R +AGAG+ VVA +
Sbjct: 18 GTRIHAVADSPPDQQGPLVVLLHGFPESWYSWRHQIPALAGAGYRVVA-----------I 66
Query: 89 NNPQFDREAWRKIHNTDKGYVDAKSVIAALKSKGVSAIGAAGFCWGGVVAAKLASSHDIQ 148
+ + R + ++ + V+ L S G G WG VA A H +
Sbjct: 67 DQRGYGRSSKYRVQKAYRIKELVGDVVGVLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDR 126
Query: 149 AAVVL 153
A V+
Sbjct: 127 CAGVV 131
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 11/125 (8%)
Query: 29 GLNTYVTGSGPPDSKSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFFYGDPIVDL 88
G + PPD + ++++ F +R +AGAG+ VVA +
Sbjct: 12 GTRIHAVADSPPDQQGPLVVLLHGFPESWYSWRHQIPALAGAGYRVVA-----------I 60
Query: 89 NNPQFDREAWRKIHNTDKGYVDAKSVIAALKSKGVSAIGAAGFCWGGVVAAKLASSHDIQ 148
+ + R + ++ + V+ L S G G WG VA A H +
Sbjct: 61 DQRGYGRSSKYRVQKAYRIKELVGDVVGVLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDR 120
Query: 149 AAVVL 153
A V+
Sbjct: 121 CAGVV 125
>pdb|1TQH|A Chain A, Covalent Reaction Intermediate Revealed In Crystal
Structure Of The Geobacillus Stearothermophilus
Carboxylesterase Est30
Length = 247
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Query: 43 KSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFF-YGDPIVDLNNPQFDREAWRKI 101
+ A+LL+ G A + R L + G+ AP + +G P +L + D + W+ +
Sbjct: 16 ERAVLLLHGFTGNSADV-RMLGRFLESKGYTCHAPIYKGHGVPPEELVHTGPD-DWWQDV 73
Query: 102 HNTDKGYVDAKSVIAALKSKGVSAIGAAGFCWGGVVAAKLASSHDIQAAVVL 153
N GY LK+KG I AG GGV + KL + I+ V +
Sbjct: 74 MN---GY-------EFLKNKGYEKIAVAGLSLGGVFSLKLGYTVPIEGIVTM 115
>pdb|1R1D|A Chain A, Structure Of A Carboxylesterase From Bacillus
Stearothermophilus
pdb|1R1D|B Chain B, Structure Of A Carboxylesterase From Bacillus
Stearothermophilus
Length = 247
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 13/111 (11%)
Query: 43 KSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFF-YGDPIVDLNNPQFDREAWRKI 101
+ A+LL+ G A + R L + G+ AP + +G P +L + D + W+ +
Sbjct: 16 ERAVLLLHGFTGNSADV-RXLGRFLESKGYTCHAPIYKGHGVPPEELVHTGPD-DWWQDV 73
Query: 102 HNTDKGYVDAKSVIAALKSKGVSAIGAAGFCWGGVVAAKLASSHDIQAAVV 152
N GY LK+KG I AG GGV + KL + I+ V
Sbjct: 74 XN---GY-------QFLKNKGYEKIAVAGLSLGGVFSLKLGYTVPIEGIVT 114
>pdb|3N1D|A Chain A, Crystal Structure Of The Complex Of Type I Ribosome
Inactivating Protein With Ribose At 1.7a Resolution
Length = 246
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 39 PPDSKSAILLISDVFGYEAPLFRKLAD--KVAGAGFLVVAPDFFYGDPIVDLNNPQFDRE 96
P S + L+ +F Y+ D V G+L + +F+ +P DL + R
Sbjct: 39 PSVSGAGRYLLMHLFNYDGNTITVAVDVTNVYIMGYLALTTSYFFNEPAADLASQYVFRS 98
Query: 97 AWRKI 101
A RKI
Sbjct: 99 ARRKI 103
>pdb|3MY6|A Chain A, Crystal Structure Of The Complex Of Type 1 Ribosome
Inactivating Protein With 7-Methylguanine At 2.65 A
Resolution
Length = 246
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 39 PPDSKSAILLISDVFGYEAPLFRKLAD--KVAGAGFLVVAPDFFYGDPIVDLNNPQFDRE 96
P S + L+ +F Y+ D V G+L + +F+ +P DL + R
Sbjct: 39 PSVSGAGRYLLMHLFNYDGNTITVAVDVTNVYIMGYLALTTSYFFNEPAADLASQYVFRS 98
Query: 97 AWRKI 101
A RKI
Sbjct: 99 ARRKI 103
>pdb|3MRW|A Chain A, Crystal Structure Of Type I Ribosome Inactivating Protein
From Momordica Balsamina At 1.7 A Resolution
pdb|3N31|A Chain A, Crystal Structure Of The Complex Of Type I Ribosome
Inactivating Protein With Fucose At 2.1a Resolution
pdb|3N3X|A Chain A, Crystal Structure Of The Complex Formed Between Type I
Ribosome Inactivating Protein And Hexapeptide
Ser-Asp-Asp-Asp-Met-Gly At 1.7 A Resolution
pdb|3N5D|A Chain A, Crystal Structure Of The Complex Of Type I Ribosome
Inactivating Protein With Glucose At 1.9a Resolution
pdb|3NFM|A Chain A, Crystal Structure Of The Complex Of Type I Ribosome
Inactivating Protein With Fructose At 2.5a Resolution
pdb|3N1N|A Chain A, Crystal Structure Of The Complex Of Type I Ribosome
Inactivating Protein With Guanine At 2.2a Resolution
pdb|3NJS|A Chain A, Crystal Structure Of The Complex Formed Between Typei
Ribosome Inactivating Protein And Lactose At 2.1a
Resolution
pdb|3N2D|A Chain A, Crystal Structure Of The Complex Of Type I Ribosome
Inactivating Protein With Hexapeptide
Ser-Asp-Asp-Asp-Met-Gly At 2.2 A Resolution
pdb|3NX9|A Chain A, Crystal Structure Of Type I Ribosome Inactivating Protein
In Complex With Maltose At 1.7a Resolution
pdb|3Q4P|A Chain A, Crystal Structure Of The Complex Of Type I Ribosome
Inactivating Protein With 7n-Methyl
-8-Hydroguanosine-5-P-Diphosphate At 1.8 A Resolution
pdb|3QJI|A Chain A, Crystal Structure Of The Complex Of Ribosome Inactivating
Protein With 7-Methylguanosine Triphosphate At 1.75a
Resolution
pdb|3RL9|A Chain A, Crystal Structure Of The Complex Of Type I Rip With The
Hydrolyzed Product Of Datp, Adenine At 1.9 A Resolution
pdb|3S9Q|A Chain A, Crystal Structure Of Native Type 1 Ribosome Inactivating
Protein From Momordica Balsamina At 1.67 A Resolution
pdb|3SJ6|A Chain A, Crystal Structure Of The Complex Of Type I Ribosome
Inactivating Protein From Momordica Balsamina With
5-(Hydroxymethyl)oxalane-2,3,4- Triol At 1.6 A
Resolution
pdb|3U6T|A Chain A, Crystal Structure Of The Complex Of Type I Ribosome
Inactivating Protein In Complex With Kanamycin At 1.85 A
pdb|3U8F|A Chain A, Crystal Structure Of The Complex Of Type I Ribosome
Inactivating Protein In Complex With Mycolic Acid At 1.8
A Resolution
pdb|3U6Z|A Chain A, Crystal Structure Of The Complex Formed Between Type 1
Ribosome Inactivating Protein And Adenine At 1.7a
Resolution
pdb|3U70|A Chain A, Crystal Structure Of Type 1 Ribosome Inactivating Protein
Complexed With Adenine In Low Ionic Solvent
pdb|3V14|A Chain A, Crystal Structure Of The Complex Of Type I Ribosome
Inactivating Protein Complexed With Trehalose At 1.70 A
Resolution
pdb|3V2K|A Chain A, Crystal Structure Of Ribosome Inactivating Protein From
Momordica Balsamina Complexed With The Product Of Rna
Substrate Adenosine Triphosphate At 2.0 A Resolution
pdb|4DWM|A Chain A, Crystal Structure Of The Complex Of Type I Ribosome
Inactivating Protein With N-Acetylglucosamine At 1.62 A
Resolution
pdb|4EMF|A Chain A, Crystal Structure Of The Complex Of Type I Ribosome
Inactivating Protein In Complex With
7n-Methyl-8-Hydroguanosine-5-P-Diphosphate At 1.77 A
pdb|4EMR|A Chain A, Crystal Structure Determination Of Type1 Ribosome
Inactivating Protein Complexed With
7-Methylguanosine-Triphosphate At 1.75a
pdb|4F9N|A Chain A, Crystal Structure Of The Complex Of Type I Ribosome
Inactivating Protein From Momordica Balsamina With
N7-Methylated Guanine At 2.65 A Resolution
pdb|4FPZ|A Chain A, Crystal Structure Of Ribosome Inactivating Protein (Rip)
From Momordica Balsamina With Uracil At 1.7 Angstrom
Resolution
pdb|4G2X|A Chain A, Crystal Structure Of Cytidine Bound Ribosome Inactivating
Protein From Momordica Balsamina At 1.78 Angstrom
Resolution
pdb|4FXA|A Chain A, Crystal Structure Of The Complex Of Ribosome Inactivating
Protein From Momordica Balsamina With N-Acetyl Arginine
At 1.7 Angstrom Resolution
pdb|4FZ9|A Chain A, Crystal Structure Of The Complex Of Ribosome Inactivating
Protein From Momordica Balsamina With Disaccharide,
N-Acetylglucosamine (Beta-1, 4) Mannose At 1.7 A
Resolution
pdb|4GUW|A Chain A, Crystal Structure Of Type 1 Ribosome Inactivating Protein
From Momordica Balsamina With Lipopolysaccharide At 1.6
Angstrom Resolution
pdb|4H0Z|A Chain A, Crystal Structure Of The Complex Of Ribosome Inactivating
Protein From Momordica Balsamina With N-Acetyl Muramic
Acid At 2.0 Angstrom Resolution
pdb|4HOA|A Chain A, Crystal Structure Of The Complex Of Type 1 Ribosome
Inactivating Protein From Momordica Balsamina With
B-D-Galactopyranosyl-(1-4)-D- Glucose At 2.0 A
Resolution
pdb|4I47|A Chain A, Crystal Structure Of The Ribosome Inactivating Protein
Complexed With Methylated Guanine
Length = 246
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 39 PPDSKSAILLISDVFGYEAPLFRKLAD--KVAGAGFLVVAPDFFYGDPIVDLNNPQFDRE 96
P S + L+ +F Y+ D V G+L + +F+ +P DL + R
Sbjct: 39 PSVSGAGRYLLMHLFNYDGNTITVAVDVTNVYIMGYLALTTSYFFNEPAADLASQYVFRS 98
Query: 97 AWRKI 101
A RKI
Sbjct: 99 ARRKI 103
>pdb|3MRY|A Chain A, Crystal Structure Of Type I Ribosome Inactivating Protein
From Momordica Balsamina With 6-Aminopurine At 2.0a
Resolution
Length = 246
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 39 PPDSKSAILLISDVFGYEAPLFRKLAD--KVAGAGFLVVAPDFFYGDPIVDLNNPQFDRE 96
P S + L+ +F Y+ D V G+L + +F+ +P DL + R
Sbjct: 39 PSVSGAGRYLLMHLFNYDGNTITVAVDVTNVYIMGYLALTTSYFHNEPAADLASQYVFRS 98
Query: 97 AWRKI 101
A RKI
Sbjct: 99 ARRKI 103
>pdb|1EO1|A Chain A, Solution Structure Of Hypothetical Protein Mth1175 From
Methanobacterium Thermoautotrophicum
Length = 124
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 93 FDREAWRKIHNTDKGYVDAKSVIAALKSKGVSAIGAAGFCWGGVVAAKLASSHDIQAAVV 152
F R + I KG +++ VI ++ SA G AG + A++ +++ ++A +
Sbjct: 20 FGRAPYFMIVEMKKGNIESSEVI---ENPSASASGGAG-----IRTAQIIANNGVKAVIA 71
Query: 153 LHPGAITVDDINEIKVPVAILGAEIDHVSPPEDLKRFGE 191
PG + +NE+ + + S E+LK F E
Sbjct: 72 SSPGPNAFEVLNELGIKI----YRATGTSVEENLKLFTE 106
>pdb|3HPO|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From
Bacillus Stearothermophilus Y714s Mutant Bound To G:t
Mismatch
Length = 580
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 80 FYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSKGVSAIGAA 129
F+ P L +PQF AW K D+K ALK KG+ G +
Sbjct: 48 FFLRPETALADPQFV--AWLGDETKKKSMFDSKRAAVALKWKGIELXGVS 95
>pdb|3HT3|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From
Bacillus Stearothermophilus V713p Mutant Bound To G:dctp
pdb|3HT3|D Chain D, Crystal Structure Of Fragment Dna Polymerase I From
Bacillus Stearothermophilus V713p Mutant Bound To G:dctp
Length = 579
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 80 FYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSKGVSAIGAA 129
F+ P L +PQF AW K D+K ALK KG+ G +
Sbjct: 47 FFLRPETALADPQFV--AWLGDETKKKSMFDSKRAAVALKWKGIELCGVS 94
>pdb|3TAN|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Large
Fragment Bound To Duplex Dna With Cytosine-Adenine
Mismatch At (N-1) Position
pdb|3TAP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Large
Fragment Bound To Duplex Dna With Cytosine-Adenine
Mismatch At (N-3) Position
pdb|3TAQ|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Large
Fragment Bound To Duplex Dna With Cytosine-Adenine
Mismatch At (N-4) Position
pdb|3TAR|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Large
Fragment Bound To Duplex Dna With Cytosine-Adenine
Mismatch At (N-6) Position
pdb|4DQS|A Chain A, Binary Complex Of Bacillus Dna Polymerase I Large Fragment
And Duplex Dna With Rc In Primer Terminus Paired With Dg
Of Template
Length = 592
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 80 FYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSKGVSAIGAA 129
F+ P L +PQF AW K D+K ALK KG+ G +
Sbjct: 60 FFLRPETALADPQFV--AWLGDETKKKSMFDSKRAAVALKWKGIELCGVS 107
>pdb|3PV8|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Large
Fragment Bound To Dna And Ddttp-Da In Closed
Conformation
pdb|3PV8|D Chain D, Crystal Structure Of Bacillus Dna Polymerase I Large
Fragment Bound To Dna And Ddttp-Da In Closed
Conformation
pdb|3PX0|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Large
Fragment Bound To Dna And Dctp-Da Mismatch (Tautomer) In
Closed Conformation
pdb|3PX0|D Chain D, Crystal Structure Of Bacillus Dna Polymerase I Large
Fragment Bound To Dna And Dctp-Da Mismatch (Tautomer) In
Closed Conformation
pdb|3PX4|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Large
Fragment Bound To Dna And Ddctp-Da Mismatch (Wobble) In
Ajar Conformation
pdb|3PX4|D Chain D, Crystal Structure Of Bacillus Dna Polymerase I Large
Fragment Bound To Dna And Ddctp-Da Mismatch (Wobble) In
Ajar Conformation
pdb|3PX6|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Large
Fragment Bound To Dna And Ddctp-Da Mismatch (Tautomer)
In Closed Conformation
pdb|3PX6|D Chain D, Crystal Structure Of Bacillus Dna Polymerase I Large
Fragment Bound To Dna And Ddctp-Da Mismatch (Tautomer)
In Closed Conformation
pdb|3THV|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Large
Fragment Bound To Dna And Ddatp-Dt In Closed
Conformation
pdb|3THV|D Chain D, Crystal Structure Of Bacillus Dna Polymerase I Large
Fragment Bound To Dna And Ddatp-Dt In Closed
Conformation
pdb|3TI0|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Large
Fragment Bound To Dna And Ddgtp-Dc In Closed
Conformation
pdb|3TI0|D Chain D, Crystal Structure Of Bacillus Dna Polymerase I Large
Fragment Bound To Dna And Ddgtp-Dc In Closed
Conformation
pdb|4DSE|A Chain A, Ternary Complex Of Bacillus Dna Polymerase I Large
Fragment F710y, Dna Duplex, And Rctp (Paired With Dg Of
Template) In Presence Of Mg2+
pdb|4DSE|D Chain D, Ternary Complex Of Bacillus Dna Polymerase I Large
Fragment F710y, Dna Duplex, And Rctp (Paired With Dg Of
Template) In Presence Of Mg2+
pdb|4DSF|A Chain A, Ternary Complex Of Bacillus Dna Polymerase I Large
Fragment F710y, Dna Duplex, And Rctp (Paired With Dg Of
Template) In Presence Of Mn2+
pdb|4DSF|D Chain D, Ternary Complex Of Bacillus Dna Polymerase I Large
Fragment F710y, Dna Duplex, And Rctp (Paired With Dg Of
Template) In Presence Of Mn2+
Length = 592
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 80 FYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSKGVSAIGAA 129
F+ P L +PQF AW K D+K ALK KG+ G +
Sbjct: 60 FFLRPETALADPQFV--AWLGDETKKKSMFDSKRAAVALKWKGIELCGVS 107
>pdb|3HP6|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From
Bacillus Stearothermophilus F710y Mutant Bound To G:t
Mismatch
pdb|3HP6|D Chain D, Crystal Structure Of Fragment Dna Polymerase I From
Bacillus Stearothermophilus F710y Mutant Bound To G:t
Mismatch
Length = 580
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 80 FYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSKGVSAIGAA 129
F+ P L +PQF AW K D+K ALK KG+ G +
Sbjct: 48 FFLRPETALADPQFV--AWLGDETKKKSMFDSKRAAVALKWKGIELXGVS 95
>pdb|4DQQ|A Chain A, Ternary Complex Of Bacillus Dna Polymerase I Large
Fragment E658a, Dna Duplex, And Rctp (Paired With Dg Of
Template) In Presence Of Mg2+
pdb|4DQQ|D Chain D, Ternary Complex Of Bacillus Dna Polymerase I Large
Fragment E658a, Dna Duplex, And Rctp (Paired With Dg Of
Template) In Presence Of Mg2+
pdb|4DQR|A Chain A, Ternary Complex Of Bacillus Dna Polymerase I Large
Fragment E658a, Dna Duplex, And Rctp (Paired With Dg Of
Template) In Presence Of Mn2+
pdb|4DQR|D Chain D, Ternary Complex Of Bacillus Dna Polymerase I Large
Fragment E658a, Dna Duplex, And Rctp (Paired With Dg Of
Template) In Presence Of Mn2+
pdb|4E0D|A Chain A, Binary Complex Of Bacillus Dna Polymerase I Large Fragment
E658a And Duplex Dna
Length = 592
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 80 FYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSKGVSAIGAA 129
F+ P L +PQF AW K D+K ALK KG+ G +
Sbjct: 60 FFLRPETALADPQFV--AWLGDETKKKSMFDSKRAAVALKWKGIELCGVS 107
>pdb|4DQI|A Chain A, Ternary Complex Of Bacillus Dna Polymerase I Large
Fragment, Dna Duplex, And Dctp (Paired With Dg Of
Template)
pdb|4DQI|D Chain D, Ternary Complex Of Bacillus Dna Polymerase I Large
Fragment, Dna Duplex, And Dctp (Paired With Dg Of
Template)
pdb|4DQP|A Chain A, Ternary Complex Of Bacillus Dna Polymerase I Large
Fragment, Dna Duplex, And Ddctp (Paired With Dg Of
Template)
pdb|4DQP|D Chain D, Ternary Complex Of Bacillus Dna Polymerase I Large
Fragment, Dna Duplex, And Ddctp (Paired With Dg Of
Template)
pdb|4DS4|A Chain A, Ternary Complex Of Bacillus Dna Polymerase I Large
Fragment, Dna Duplex, And Rctp In Presence Of Mn2+
pdb|4DS4|D Chain D, Ternary Complex Of Bacillus Dna Polymerase I Large
Fragment, Dna Duplex, And Rctp In Presence Of Mn2+
pdb|4DS5|A Chain A, Ternary Complex Of Bacillus Dna Polymerase I Large
Fragment, Dna Duplex, And Rctp In Presence Of Mg2+
pdb|4DS5|D Chain D, Ternary Complex Of Bacillus Dna Polymerase I Large
Fragment, Dna Duplex, And Rctp In Presence Of Mg2+
Length = 592
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 80 FYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSKGVSAIGAA 129
F+ P L +PQF AW K D+K ALK KG+ G +
Sbjct: 60 FFLRPETALADPQFV--AWLGDETKKKSMFDSKRAAVALKWKGIELCGVS 107
>pdb|2XY5|A Chain A, Crystal Structure Of An Artificial Salen-Copper Basepair
In Complex With Fragment Dna Polymerase I From Bacillus
Stearothermophilus
Length = 581
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 80 FYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSKGVSAIGAA 129
F+ P L +PQF AW K D+K ALK KG+ G +
Sbjct: 49 FFLRPETALADPQFV--AWLGDETKKKSMFDSKRAAVALKWKGIELCGVS 96
>pdb|2XY7|A Chain A, Crystal Structure Of A Salicylic Aldehyde Base In The
Pre-Insertion Site Of Fragment Dna Polymerase I From
Bacillus Stearothermophilus
Length = 580
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 80 FYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSKGVSAIGAA 129
F+ P L +PQF AW K D+K ALK KG+ G +
Sbjct: 48 FFLRPETALADPQFV--AWLGDETKKKSMFDSKRAAVALKWKGIELCGVS 95
>pdb|2XO7|A Chain A, Crystal Structure Of A Da:o-Allylhydroxylamine-Dc Basepair
In Complex With Fragment Dna Polymerase I From Bacillus
Stearothermophilus
Length = 580
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 80 FYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSKGVSAIGAA 129
F+ P L +PQF AW K D+K ALK KG+ G +
Sbjct: 48 FFLRPETALADPQFV--AWLGDETKKKSMFDSKRAAVALKWKGIELCGVS 95
>pdb|2XY6|A Chain A, Crystal Structure Of A Salicylic Aldehyde Basepair In
Complex With Fragment Dna Polymerase I From Bacillus
Stearothermophilus
Length = 581
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 80 FYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSKGVSAIGAA 129
F+ P L +PQF AW K D+K ALK KG+ G +
Sbjct: 49 FFLRPETALADPQFV--AWLGDETKKKSMFDSKRAAVALKWKGIELCGVS 96
>pdb|1LV5|A Chain A, Crystal Structure Of The Closed Conformation Of Bacillus
Dna Polymerase I Fragment Bound To Dna And Dctp
pdb|1LV5|B Chain B, Crystal Structure Of The Closed Conformation Of Bacillus
Dna Polymerase I Fragment Bound To Dna And Dctp
Length = 580
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 80 FYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSKGVSAIGAA 129
F+ P L +PQF AW K D+K ALK KG+ G +
Sbjct: 48 FFLRPETALADPQFV--AWLGDETKKKSMFDSKRAAVALKWKGIELCGVS 95
>pdb|1L3S|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
Complexed To 9 Base Pairs Of Duplex Dna.
pdb|1L3T|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
Product Complex With 10 Base Pairs Of Duplex Dna
Following Addition Of A Single Dttp Residue
pdb|1L3U|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
Product Complex With 11 Base Pairs Of Duplex Dna
Following Addition Of A Dttp And A Datp Residue.
pdb|1L3V|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
Product Complex With 15 Base Pairs Of Duplex Dna
Following Addition Of Dttp, Datp, Dctp, And Dgtp
Residues.
pdb|1L5U|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
Product Complex With 12 Base Pairs Of Duplex Dna
Following Addition Of A Dttp, A Datp, And A Dctp
Residue.
pdb|1NJW|A Chain A, Guanine-Thymine Mismatch At The Polymerase Active Site
pdb|1NJX|A Chain A, Thymine-Guanine Mismatch At The Polymerase Active Site
pdb|1NJY|A Chain A, Thymine-Thymine Mismatch At The Polymerase Active Site
pdb|1NJZ|A Chain A, Cytosine-thymine Mismatch At The Polymerase Active Site
pdb|1NK0|A Chain A, Adenine-Guanine Mismatch At The Polymerase Active Site
pdb|1NK4|A Chain A, Guanine-Guanine Mismatch At The Polymerase Active Site
pdb|1NK5|A Chain A, Adenine-Adenine Mismatch At The Polymerase Active Site
pdb|1NK6|A Chain A, Cytosine-Cytosine Mismatch At The Polymerase Active Site
pdb|1NK7|A Chain A, Guanine-Adenine Mismatch At The Polymerase Active Site
pdb|1NK8|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
Guanine-Thymine Mismatch After A Single Round Of Primer
Extension, Following Incorporation Of Dctp.
pdb|1NK9|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
Guanine-Thymine Mismatch After Two Rounds Of Primer
Extension, Following Incorporation Of Dctp And Dgtp.
pdb|1NKB|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
Guanine-Thymine Mismatch After Three Rounds Of Primer
Extension, Following Incorporation Of Dctp, Dgtp, And
Dttp.
pdb|1NKC|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
Guanine-Thymine Mismatch After Five Rounds Of Primer
Extension, Following Incorporation Of Dctp, Dgtp, Dttp,
And Datp.
pdb|1NKE|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
Cytosine-Thymine Mismatch After A Single Round Of Primer
Extension, Following Incorporation Of Dctp.
pdb|1XC9|A Chain A, Structure Of A High-Fidelity Polymerase Bound To A
Benzo[a]pyrene Adduct That Blocks Replication
pdb|1XWL|A Chain A, Bacillus Stearothermophilus (Newly Identified Strain As
Yet Unnamed) Dna Polymerase Fragment
Length = 580
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 80 FYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSKGVSAIGAA 129
F+ P L +PQF AW K D+K ALK KG+ G +
Sbjct: 48 FFLRPETALADPQFV--AWLGDETKKKSMFDSKRAAVALKWKGIELCGVS 95
>pdb|3BDP|A Chain A, Dna Polymerase IDNA COMPLEX
pdb|4BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
Complexed To 11 Base Pairs Of Duplex Dna After Addition
Of Two Datp Residues
pdb|2BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
Complexed To 9 Base Pairs Of Duplex Dna
Length = 580
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 80 FYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSKGVSAIGAA 129
F+ P L +PQF AW K D+K ALK KG+ G +
Sbjct: 48 FFLRPETALADPQFV--AWLGDETKKKSMFDSKRAAVALKWKGIELCGVS 95
>pdb|3EYZ|A Chain A, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I
With Duplex Dna (Open Form)
Length = 580
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 80 FYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSKGVSAIGAA 129
F+ P L +PQF AW K D+K ALK KG+ G +
Sbjct: 48 FFLRPETALADPQFV--AWLGDETKKKSMFDSKRAAVALKWKGIELCGVS 95
>pdb|2HHW|A Chain A, Ddttp:o6-Methyl-Guanine Pair In The Polymerase Active
Site, In The Closed Conformation
pdb|2HHW|D Chain D, Ddttp:o6-Methyl-Guanine Pair In The Polymerase Active
Site, In The Closed Conformation
Length = 580
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 80 FYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSKGVSAIGAA 129
F+ P L +PQF AW K D+K ALK KG+ G +
Sbjct: 48 FFLRPETALADPQFV--AWLGDETKKKSMFDSKRAAVALKWKGIELCGVS 95
>pdb|2HVH|A Chain A, Ddctp:o6meg Pair In The Polymerase Active Site (0
Position)
pdb|2HVH|D Chain D, Ddctp:o6meg Pair In The Polymerase Active Site (0
Position)
pdb|2HVI|A Chain A, Ddctp:g Pair In The Polymerase Active Site (0 Position)
pdb|2HVI|D Chain D, Ddctp:g Pair In The Polymerase Active Site (0 Position)
pdb|3EZ5|A Chain A, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I
With Duplex Dna , Dctp, And Zinc (Closed Form).
pdb|3EZ5|D Chain D, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I
With Duplex Dna , Dctp, And Zinc (Closed Form)
Length = 580
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 80 FYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSKGVSAIGAA 129
F+ P L +PQF AW K D+K ALK KG+ G +
Sbjct: 48 FFLRPETALADPQFV--AWLGDETKKKSMFDSKRAAVALKWKGIELCGVS 95
>pdb|1U45|A Chain A, 8oxoguanine At The Pre-Insertion Site Of The Polymerase
Active Site
pdb|1U47|A Chain A, Cytosine-8-Oxoguanine Base Pair At The Polymerase Active
Site
pdb|1U48|A Chain A, Extension Of A Cytosine-8-Oxoguanine Base Pair
pdb|1U49|A Chain A, Adenine-8oxoguanine Mismatch At The Polymerase Active Site
pdb|1U4B|A Chain A, Extension Of An Adenine-8oxoguanine Mismatch
pdb|1UA0|A Chain A, Aminofluorene Dna Adduct At The Pre-Insertion Site Of A
Dna Polymerase
pdb|1UA1|A Chain A, Structure Of Aminofluorene Adduct Paired Opposite Cytosine
At The Polymerase Active Site
Length = 580
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 80 FYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSKGVSAIGAA 129
F+ P L +PQF AW K D+K ALK KG+ G +
Sbjct: 48 FFLRPETALADPQFV--AWLGDETKKKSMFDSKRAAVALKWKGIELCGVS 95
>pdb|2HHQ|A Chain A, O6-Methyl-Guanine:t Pair In The Polymerase-10 Basepair
Position
pdb|2HHS|A Chain A, O6-Methyl:c Pair In The Polymerase-10 Basepair Position
pdb|2HHT|A Chain A, C:o6-Methyl-Guanine Pair In The Polymerase-2 Basepair
Position
pdb|2HHU|A Chain A, C:o6-Methyl-Guanine In The Polymerase Postinsertion Site
(- 1 Basepair Position)
pdb|2HHV|A Chain A, T:o6-Methyl-Guanine In The Polymerase-2 Basepair Position
pdb|2HHX|A Chain A, O6-Methyl-Guanine In The Polymerase Template Preinsertion
Site
pdb|2HW3|A Chain A, T:o6-Methyl-Guanine Pair In The Polymerase Postinsertion
Site (-1 Basepair Position)
Length = 580
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 80 FYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSKGVSAIGAA 129
F+ P L +PQF AW K D+K ALK KG+ G +
Sbjct: 48 FFLRPETALADPQFV--AWLGDETKKKSMFDSKRAAVALKWKGIELCGVS 95
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 29 GLNTYVTGSGPPDSKSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFF 80
GL + GP D++ L + + L+RK+ AG VVAPD F
Sbjct: 32 GLRMHYVDEGPRDAEHTFLCLHGEPSWSF-LYRKMLPVFTAAGGRVVAPDLF 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,007,034
Number of Sequences: 62578
Number of extensions: 339944
Number of successful extensions: 917
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 907
Number of HSP's gapped (non-prelim): 48
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)