BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025842
(247 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZT66|E134_MAIZE Endo-1,3;1,4-beta-D-glucanase OS=Zea mays PE=1 SV=1
Length = 303
Score = 147 bits (372), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 117/197 (59%), Gaps = 11/197 (5%)
Query: 4 SQCFENPPKLSPGSG--CGAGTVQQ--LGGLNTYVTGSGPPDSKSAILLISDVFGYEAPL 59
SQC +NPP S AG V GGL YV+G+ S A++L SDVFGYEAPL
Sbjct: 27 SQCLDNPPDRSIHGRQLAEAGEVVHDLPGGLRAYVSGAA--SSSRAVVLASDVFGYEAPL 84
Query: 60 FRKLADKVAGAGFLVVAPDFFYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALK 119
R++ DKVA AG+ VV PDF GD + D N W + H+ K DAK + AALK
Sbjct: 85 LRQIVDKVAKAGYFVVVPDFLKGDYLDDKKN----FTEWLEAHSPVKAAEDAKPLFAALK 140
Query: 120 SKGVSAIGAAGFCWGGVVAAKLASSHDIQAAVVLHPGAITVDDINEIKVPVAILGAEIDH 179
+G S + G+CWGG ++ ++ + D++A + HP ++T DD+ E+K P+ ILGA+ D
Sbjct: 141 KEGKS-VAVGGYCWGGKLSVEVGKTSDVKAVCLSHPYSVTADDMKEVKWPIEILGAQNDT 199
Query: 180 VSPPEDLKRFGEILSAK 196
+PP+++ RF +L +
Sbjct: 200 TTPPKEVYRFVHVLRER 216
>sp|Q8R1G2|CMBL_MOUSE Carboxymethylenebutenolidase homolog OS=Mus musculus GN=Cmbl PE=2
SV=1
Length = 245
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 116/231 (50%), Gaps = 12/231 (5%)
Query: 20 GAGTVQQLGGLNTYVTGSGPPDSKSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDF 79
G G Q+ + YVT S P D+ A++++ D+FG++ P R +AD +A G+ + PDF
Sbjct: 20 GMGHEVQVEHIKAYVTRS-PVDAGKAVIVVQDIFGWQLPNTRYMADMIARNGYTTIVPDF 78
Query: 80 FYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSK-GVSAIGAAGFCWGGVVA 138
F G D AW K N K + +V+ L+ + IG GFCWGGVV
Sbjct: 79 FVGQEPWDPAGDWSTFPAWLKSRNARKVNREVDAVLRYLRQQCHAQKIGIVGFCWGGVVV 138
Query: 139 AKLASSH-DIQAAVVLHPGAITVDDINEIKVPVAILGAEIDHVSPPEDLKRFGEILSAKL 197
++ +++ DI+A V ++ +D+ +K P + AE D V P E + L+ KL
Sbjct: 139 HQVMTAYPDIRAGVSVYGIIRDSEDVYNLKNPTLFIFAENDTVIPLEQV----STLTQKL 194
Query: 198 KNDCL----VKIYPRVSHGWTVRYNVEDEFAVKS-AEEAHEDMINWLTKYV 243
K C+ VK + +HG+ R + A K EEA ++I WL KYV
Sbjct: 195 KEHCIVNYQVKTFSGQTHGFVHRKREDCSPADKPYIEEARRNLIEWLNKYV 245
>sp|Q5XH09|CMBL_XENLA Carboxymethylenebutenolidase homolog OS=Xenopus laevis GN=cmbl PE=2
SV=1
Length = 246
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 111/230 (48%), Gaps = 10/230 (4%)
Query: 20 GAGTVQQLGGLNTYVTGSGPPDSKSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDF 79
G Q+ + YV+ K A++++ D+FG++ P R +AD + G++ + PDF
Sbjct: 20 AKGQEIQIEHIKAYVSKPHSSTDK-AVIVVQDIFGWQLPNTRFMADLLTAHGYITICPDF 78
Query: 80 FYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSK-GVSAIGAAGFCWGGVVA 138
F G +N W + K + V+ LK + V IG GFCWGGVV
Sbjct: 79 FVGQESWKPSNDWSTFTEWLQTRQATKVEKEMNVVLKYLKEQCHVKKIGVIGFCWGGVVT 138
Query: 139 AKLASSH-DIQAAVVLHPGAITVDDINEIKVPVAILGAEIDHVSPPEDLKRFGEILSAKL 197
L + +++A V + V+D + P + AEIDHV P E + + L
Sbjct: 139 HHLMLKYPELKAGVSFYGIIRDVEDRYNLLNPTLFIFAEIDHVIPLEQVSLLEQKLKVHS 198
Query: 198 KNDCLVKIYPRVSHGWTVR----YNVEDEFAVKSAEEAHEDMINWLTKYV 243
K D +K++P+ +HG+ R N ED+ + EEA +DM+ WL KY+
Sbjct: 199 KVDFQIKVFPKQTHGFVHRKKEDINPEDKPFI---EEARKDMLEWLQKYI 245
>sp|Q6P7K0|CMBL_XENTR Carboxymethylenebutenolidase homolog OS=Xenopus tropicalis GN=cmbl
PE=2 SV=1
Length = 246
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 110/227 (48%), Gaps = 4/227 (1%)
Query: 20 GAGTVQQLGGLNTYVTGSGPPDSKSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDF 79
G Q+ + YV+ K A++++ D+FG++ P R +AD + G++ + PDF
Sbjct: 20 AKGQEVQIEHIKAYVSKPHSSTDK-AVIVVQDIFGWQLPNTRFMADLLTAHGYITICPDF 78
Query: 80 FYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSK-GVSAIGAAGFCWGGVVA 138
F G +N + W + K + V+ LK + V IG GFCWGGVV
Sbjct: 79 FVGQEPWKPSNDRSTFTEWLQTRQATKVEKEINVVLKYLKEQCHVKKIGVIGFCWGGVVT 138
Query: 139 AKLASSH-DIQAAVVLHPGAITVDDINEIKVPVAILGAEIDHVSPPEDLKRFGEILSAKL 197
L + +++A V + V+D + P + AE+DHV P E + E L
Sbjct: 139 HHLMLKYPELKAGVSFYGIIRDVEDRYNLLNPTLFIFAEMDHVIPLEQVSLLEEKLKVHS 198
Query: 198 KNDCLVKIYPRVSHGWTVRYNVEDEFAVKS-AEEAHEDMINWLTKYV 243
K D VK++P+ +HG+ R N + K EEA ++M+ WL KY+
Sbjct: 199 KVDFQVKVFPKQTHGFVHRKNEDINPEDKPFIEEARKNMLEWLHKYI 245
>sp|Q7TP52|CMBL_RAT Carboxymethylenebutenolidase homolog OS=Rattus norvegicus GN=Cmbl
PE=2 SV=1
Length = 245
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 114/231 (49%), Gaps = 12/231 (5%)
Query: 20 GAGTVQQLGGLNTYVTGSGPPDSKSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDF 79
G G Q+ + YVT S P D+ A++++ D+FG++ R +AD +AG G+ + PDF
Sbjct: 20 GMGQEVQVEHIKAYVTRS-PVDAGKAVIVVQDIFGWQLSNTRYMADMIAGNGYTTIVPDF 78
Query: 80 FYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSK-GVSAIGAAGFCWGGVVA 138
F G D W K N K + +V+ LK + IG GFCWGG+V
Sbjct: 79 FVGQEPWDPAGDWSTFPEWLKSRNARKINREVDAVLRYLKQQCHAQKIGIVGFCWGGIVV 138
Query: 139 AKLASSH-DIQAAVVLHPGAITVDDINEIKVPVAILGAEIDHVSPPEDLKRFGEILSAKL 197
+ +++ +++A V ++ +D+ +K P + AE D V P E + IL KL
Sbjct: 139 HHVMTTYPEVRAGVSVYGIIRDSEDVYNLKNPTLFIFAENDAVIPLEQVS----ILIQKL 194
Query: 198 KNDCL----VKIYPRVSHGWTVRYNVEDEFAVK-SAEEAHEDMINWLTKYV 243
K C+ VK + +HG+ R + A K EEA ++I WL KY+
Sbjct: 195 KEHCIVNYQVKTFSGQTHGFVHRKREDCSPADKPYIEEARRNLIEWLNKYI 245
>sp|Q5RBU3|CMBL_PONAB Carboxymethylenebutenolidase homolog OS=Pongo abelii GN=CMBL PE=2
SV=1
Length = 245
Score = 103 bits (258), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 110/227 (48%), Gaps = 4/227 (1%)
Query: 20 GAGTVQQLGGLNTYVTGSGPPDSKSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDF 79
G G Q+ + YVT S P D+ A+++I D+FG++ P R +AD ++G G+ + PDF
Sbjct: 20 GLGREVQVEHIKAYVTKS-PVDAGKAVIVIQDIFGWQLPNTRYMADMISGNGYTTIVPDF 78
Query: 80 FYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSK-GVSAIGAAGFCWGGVVA 138
F G D + W K N K + +++ LK + IG GFCWGG+
Sbjct: 79 FVGQEPWDPSGDWSIFPEWLKTRNAQKIDREISAILKYLKQQCHAQKIGIVGFCWGGIAV 138
Query: 139 AKLASSH-DIQAAVVLHPGAITVDDINEIKVPVAILGAEIDHVSPPEDLKRFGEILSAKL 197
L + + +A V ++ +DI +K P + AE D V P +D+ + L
Sbjct: 139 HHLMMKYSEFRAGVSVYGIVKDSEDIYNLKNPTLFIFAENDVVIPLKDVSLLTQKLKEHC 198
Query: 198 KNDCLVKIYPRVSHGWTVRYNVEDEFAVK-SAEEAHEDMINWLTKYV 243
K + +K + +HG+ R + A K +EA ++I WL KY+
Sbjct: 199 KVEYQIKTFSGQTHGFVHRKREDCSPADKPYIDEARRNLIEWLNKYM 245
>sp|Q96DG6|CMBL_HUMAN Carboxymethylenebutenolidase homolog OS=Homo sapiens GN=CMBL PE=1
SV=1
Length = 245
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 109/227 (48%), Gaps = 4/227 (1%)
Query: 20 GAGTVQQLGGLNTYVTGSGPPDSKSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDF 79
G G Q+ + YVT S P D+ A+++I D+FG++ P R +AD ++G G+ + PDF
Sbjct: 20 GLGREVQVEHIKAYVTKS-PVDAGKAVIVIQDIFGWQLPNTRYIADMISGNGYTTIVPDF 78
Query: 80 FYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSK-GVSAIGAAGFCWGGVVA 138
F G D + W K N K + +++ LK + IG GFCWGG
Sbjct: 79 FVGQEPWDPSGDWSIFPEWLKTRNAQKIDREISAILKYLKQQCHAQKIGIVGFCWGGTAV 138
Query: 139 AKLASSH-DIQAAVVLHPGAITVDDINEIKVPVAILGAEIDHVSPPEDLKRFGEILSAKL 197
L + + +A V ++ +DI +K P + AE D V P +D+ + L
Sbjct: 139 HHLMMKYSEFRAGVSVYGIVKDSEDIYNLKNPTLFIFAENDVVIPLKDVSLLTQKLKEHC 198
Query: 198 KNDCLVKIYPRVSHGWTVRYNVEDEFAVK-SAEEAHEDMINWLTKYV 243
K + +K + +HG+ R + A K +EA ++I WL KY+
Sbjct: 199 KVEYQIKTFSGQTHGFVHRKREDCSPADKPYIDEARRNLIEWLNKYM 245
>sp|P39721|AIM2_YEAST Protein AIM2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=AIM2 PE=1 SV=1
Length = 246
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 119/249 (47%), Gaps = 21/249 (8%)
Query: 3 GSQCFENPPKLSPGSGCGAGTVQQLGGLNTYVTGSGPPDSKSAILLISDVFGYEAPLFRK 62
G CFE G G +++ GL+TY GS P K I++++DV+G +
Sbjct: 7 GKCCFEGVCH----DGTPKGRREEIFGLDTYAAGSTSPKEK-VIVILTDVYGNKFNNVLL 61
Query: 63 LADKVAGAGFLVVAPDFFYGDPIVDLNNPQFDREAWRKIHNTD--KGYVDAKSVIAALKS 120
ADK A AG++V PD +GD I ++ DR+AW + H+ + K VD + L+
Sbjct: 62 TADKFASAGYMVFVPDILFGDAIS--SDKPIDRDAWFQRHSPEVTKKIVDGFMKLLKLEY 119
Query: 121 KGVSAIGAAGFCWGGVVAAKLASSHD--IQAAVVLHPGAITVDDINEI--KVPVAILGAE 176
IG G+C+G A + S AA + HP +++++I I K P+ I AE
Sbjct: 120 DP-KFIGVVGYCFGAKFAVQHISGDGGLANAAAIAHPSFVSIEEIEAIDSKKPILISAAE 178
Query: 177 IDHVSPPEDLKRFGEILSAKLKND---CLVKIYPRVSHGWTVRYNVEDEFAVKSAEEAHE 233
DH+ P +L+ E KLK++ + ++ V+HG+ R ++ + E+
Sbjct: 179 EDHIFPA-NLRHLTE---EKLKDNHATYQLDLFSGVAHGFAARGDISIPAVKYAKEKVLL 234
Query: 234 DMINWLTKY 242
D I W +
Sbjct: 235 DQIYWFNHF 243
>sp|O67802|DLHH_AQUAE Putative carboxymethylenebutenolidase OS=Aquifex aeolicus (strain
VF5) GN=aq_1997 PE=3 SV=1
Length = 231
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 102/221 (46%), Gaps = 21/221 (9%)
Query: 37 SGPPDSKSAILLISDVFGYEAPL--FRKLADKVAGAGFLVVAPDFFYG------DPIVDL 88
+ P + A+L+ + +G E+PL +++ DK+A GF+ APDF+ G D L
Sbjct: 19 ATPKWAGPAVLVFHEWWGLESPLSNIKEICDKLADEGFVAFAPDFYKGQYADNPDDAGKL 78
Query: 89 NNPQFDREAWRKIHNTDKGYVDAKSVIAALKSKGVSAIGAAGFCWGGVVAAKLASSH-DI 147
F+ +++ D+ + + + + +G GFC GG +A A+ ++
Sbjct: 79 MTEMFE----KRMDEVDRIFQASVEFVKECRYTYPKKVGITGFCCGGTLAMYFAAKFPEM 134
Query: 148 QAAVVLHPGAITVDDIN--EIKVPVAILGAEIDHVSPPEDLKRFGEILSAKLKN--DCLV 203
A + G + IN IKVP+ + AE D +++ +I KN D V
Sbjct: 135 VDASLPFYGLPQLTQINAENIKVPIFFILAEKDEFVNNDEVI---DIAKTVWKNGVDVQV 191
Query: 204 KIYPRVSHGWTVRYNVEDEFAVKSAEEAHEDMINWLTKYVK 244
K++ V+H + + ED + K A EA E +N+ Y+K
Sbjct: 192 KVFSGVTHAF-LNEKREDVYDPKRACEAWELAVNFFKTYLK 231
>sp|O14359|YB4E_SCHPO Uncharacterized AIM2 family protein C30D10.14
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC30D10.14 PE=3 SV=1
Length = 249
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 92/231 (39%), Gaps = 25/231 (10%)
Query: 24 VQQLGGLNTYVTGSGPPDSKSAILL-ISDVFGYEAPLFRKLADKVAGAGFLVVAPDFFYG 82
++ GGL TYV GS S + +L+ D+FG + ++ ADK+A GF V PDF G
Sbjct: 25 IENFGGLTTYVVGS---TSNTRVLIGFMDIFGLSDQI-KEGADKLADDGFTVYLPDFLEG 80
Query: 83 DPIVDLNNPQFDREAWRKIHNTDKGYVD--------AKSVIAALKSKGVS-AIGAAGFCW 133
P+ P E + ++ + AK V A + G + IG GFCW
Sbjct: 81 KPLPVTALPPKTPEDQKLCNDFFSTRISPNLHWPKLAKVVEAVRANHGPNVTIGTYGFCW 140
Query: 134 GGVVAAKLASSHDIQAAVVLHPGAITVDDINEIKVPVAILGAEIDHVSPPEDLKRFGEIL 193
G V ++ D HP D + PV L S ED K E
Sbjct: 141 GAKVLVTYPATIDFVGIASCHPSFPDSADAANVHCPVLFL------CSKDEDAKIIKEWE 194
Query: 194 SAKLKNDCLVK----IYPRVSHGW-TVRYNVEDEFAVKSAEEAHEDMINWL 239
A N K + + HGW R ++ + K +E ++ + ++
Sbjct: 195 EAFKTNPAYAKSSFETFSDMFHGWMAARADLSNPEQRKRFDEGYQKVSSFF 245
>sp|Q8X8L4|DLHH_ECO57 Putative carboxymethylenebutenolidase OS=Escherichia coli O157:H7
GN=ysgA PE=3 SV=1
Length = 271
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 90/211 (42%), Gaps = 18/211 (8%)
Query: 46 ILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFFY--GDPIVDLNNPQFDREAWRKIHN 103
++++ ++FG + R + ++A G+L +AP+ ++ GDP + P K+ +
Sbjct: 59 VIVVQEIFGVHEHI-RDICRRLALEGYLAIAPELYFREGDPNDFADIPTLLSGLVAKVPD 117
Query: 104 TD-KGYVDAKSVIAALKSKGVSAIGAAGFCWGGVVAAKLASSHDIQAAVVLHPGAIT--- 159
+ +D + A+ V + GFCWGG + A+ + A V G +T
Sbjct: 118 SQVLADLDHVASWASRNGGDVHRLMITGFCWGGRITWLYAAHNPQLKAAVAWYGKLTGDK 177
Query: 160 --------VDDINEIKVPVAILGAEIDHVSPPEDLKRFGEILSAKLKNDCLVKIYPRVSH 211
VD ++ PV L +D+ P E ++ + L A ++ +YP H
Sbjct: 178 SLNSPKQPVDIATDLNAPVLGLYGGLDNSIPQESVETMRQALRAANAKAEII-VYPDAGH 236
Query: 212 GWTVRYNVEDEFAVKSAEEAHEDMINWLTKY 242
+ Y + SAE+ + M+ W +Y
Sbjct: 237 AFNADY--RPSYHAASAEDGWQRMLEWFKQY 265
>sp|P56262|DLHH_ECOLI Putative carboxymethylenebutenolidase OS=Escherichia coli (strain
K12) GN=ysgA PE=3 SV=3
Length = 271
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 92/211 (43%), Gaps = 18/211 (8%)
Query: 46 ILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFFY--GDPIVDLNNPQFDREAWRKIHN 103
++++ ++FG + R + ++A G+L +AP+ ++ GDP + P K+ +
Sbjct: 59 VIVVQEIFGVHEHI-RDICRRLALEGYLAIAPELYFREGDPNDFADIPTLLSGLVAKVPD 117
Query: 104 TD-KGYVDAKSVIAALKSKGVSAIGAAGFCWGGVVAAKLASSHDIQAAVVLHPGAITVD- 161
+ +D + A+ V + GFCWGG + A+ + A V G +T D
Sbjct: 118 SQVLADLDHVASWASRNGGDVHRLMITGFCWGGRITWLYAAHNPQLKAAVAWYGKLTGDK 177
Query: 162 DINEIKVPVAI---LGAEI-------DHVSPPEDLKRFGEILSAKLKNDCLVKIYPRVSH 211
+N K PV I L A I D+ P E ++ + L A ++ +YP H
Sbjct: 178 SLNSPKQPVDIATDLNAPILGLYGGQDNSIPQESVETMRQALRAANAKAEII-VYPDAGH 236
Query: 212 GWTVRYNVEDEFAVKSAEEAHEDMINWLTKY 242
+ Y + SAE+ + M+ W +Y
Sbjct: 237 AFNADY--RPSYHAASAEDGWQRMLEWFKQY 265
>sp|P46209|USF_AQUPY Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1
Length = 231
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 97/210 (46%), Gaps = 19/210 (9%)
Query: 46 ILLISDVFGYEAPL--FRKLADKVAGAGFLVVAPDFFYGDPIVDLNNPQFDREAWRKIHN 103
+++I + +G E+PL +++ D+ A GF+ APDF+ G +NP + +
Sbjct: 28 VIVIHEWWGLESPLSNIKEICDRFAQEGFVAFAPDFYEGKY---ADNPDDAGKLMTDMFE 84
Query: 104 TDKGYVDA--KSVIAALKSKGVSA---IGAAGFCWGGVVAAKLASSH-DIQAAVVLHPG- 156
VDA K+ + LK ++ +G GFC GG ++ A D+ A V G
Sbjct: 85 NRMDKVDAIFKASVDFLKECRYTSPKKVGVTGFCCGGTLSMYFAGKFPDLIDASVPFYGL 144
Query: 157 -AITVDDINEIKVPVAILGAEIDHVSPPEDLKRFGEILSAKLKN--DCLVKIYPRVSHGW 213
IT D IKVP+ + AE D +++ +I KN D VK+Y V+H +
Sbjct: 145 PQITKIDAENIKVPIFFILAEKDEFVNNDEVI---DIAKKVWKNGVDVKVKVYSGVTHAF 201
Query: 214 TVRYNVEDEFAVKSAEEAHEDMINWLTKYV 243
+ ED + A++A + + +Y+
Sbjct: 202 -LNEKREDVYDPCRAQDAWNLTVAFFKEYL 230
>sp|Q9P7U1|YI7F_SCHPO Uncharacterized AIM2 family protein C977.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC977.15 PE=3 SV=1
Length = 247
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 90/209 (43%), Gaps = 18/209 (8%)
Query: 24 VQQLGGLNTYVTGSGPPDSKSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFFYGD 83
++ +GG+ TY TG SK ++ DVFG + ++ AD++A + PDF G+
Sbjct: 24 LKDIGGMQTYFTGKR--SSKVVLIGFMDVFGLSKQI-KEGADQLANHELAIYLPDFLNGE 80
Query: 84 PI-VDLNNPQF--DREAWRKIHNTDKGYVDAKSV------IAALKSKGVSAIGAAGFCWG 134
+++ +P+ +EA K + + I + + V IGA GFCWG
Sbjct: 81 TASIEMIDPKTIEQKEARSKFMEKISSPLHWPKLTKVIEDIERIHGQDVK-IGAYGFCWG 139
Query: 135 GVVAAKLASSHDIQAAVVLHPGAITVDDINEIKVPVAILGAEIDHVSPPEDLKRFGEIL- 193
V + HP + D + PV L ++ + PE++ + +
Sbjct: 140 AKVLITYPNKERFLRIGCAHPSLLDPVDAKHVHCPVCFLCSKDED---PEEVDAWKKSFE 196
Query: 194 SAKLKNDCLVKIYPRVSHGWT-VRYNVED 221
++ ++ + + ++ HGW R N+ D
Sbjct: 197 NSPYFSESYFETFGKMHHGWMAARANLSD 225
>sp|Q8ZAL4|DLHH_YERPE Putative carboxymethylenebutenolidase OS=Yersinia pestis GN=YPO3787
PE=3 SV=1
Length = 267
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 101/246 (41%), Gaps = 26/246 (10%)
Query: 16 GSGCGAGTVQQLGG-LNTYVTGSGPPDSKSA----ILLISDVFGYEAPLFRKLADKVAGA 70
G CG T+ G L Y+ PD + ++++ ++FG + + + ++A
Sbjct: 17 GIHCGETTIPSQGDELPAYI---AKPDQHTGPYPVVIVVQEIFGVHEHI-QDICRRLAKQ 72
Query: 71 GFLVVAPDFFY--GDPIVDLNNPQFDREAWRKIHNTDKGY-VDAKSVIAALKSKGVSAIG 127
G+L +AP+ ++ GD N + +K+ + +D + A+ +
Sbjct: 73 GYLAIAPELYFRQGDAKDYSNINELVNNLVKKVPDRQVLVDLDHTAHWASRHGGDTKKLA 132
Query: 128 AAGFCWGGVVAAKLASSHDIQAAVVLHPGAIT-----------VDDINEIKVPVAILGAE 176
GFCWGG +A A+ + A V G + VD ++ PV L
Sbjct: 133 ITGFCWGGRIAWLYAAHNPQLKAAVAWYGKLVGEKTLFLPKYPVDVAIDLCAPVLGLYGG 192
Query: 177 IDHVSPPEDLKRFGEILSAKLKNDCLVKIYPRVSHGWTVRYNVEDEFAVKSAEEAHEDMI 236
D P E ++ + L A D + +YP H + Y + +SA++ + M+
Sbjct: 193 KDTSIPAEHIETMRQALRAA-NADAEIIVYPEAGHAFNADYR--PSYHAESAQDGWQRML 249
Query: 237 NWLTKY 242
+W T++
Sbjct: 250 DWFTQH 255
>sp|Q54MZ9|CMBL_DICDI Carboxymethylenebutenolidase homolog OS=Dictyostelium discoideum
GN=cmbl PE=3 SV=1
Length = 255
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 96/225 (42%), Gaps = 36/225 (16%)
Query: 29 GLNTYVTGSGPPDSKSA---ILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFFY--GD 83
GL S P DS+ ++ + D FG L+ ++ADK+A G+ VV P+F+Y G
Sbjct: 13 GLKCDAYVSRPKDSQKELKPVIFVMDAFGLRDWLY-EMADKIAEEGYFVVQPNFYYRIGK 71
Query: 84 PIV----DLNNPQFDREAWRKIH------NTDKGYVDAKSVIAAL-KSKGV----SAIGA 128
I+ L + E +I N ++ D + + K +GV +
Sbjct: 72 NIITNLEKLKSADTKDEVICQIRTQMAKINREETVSDVSEMFDFIDKQEGVRKSKEGVAI 131
Query: 129 AGFCWGGVVAAK--LASSHDIQAAVVLHPGAITV-DDINEIKVPVAILGAEI-------D 178
G+C+GG VA + +A ++ H G + + DD N I + + AE D
Sbjct: 132 VGYCFGGGVAMRSAIAFPDIVKVVASFHAGRLAIPDDENSIHKHLKGVKAECYFGHADND 191
Query: 179 HVSPPEDLKRFGEILS-AKLKNDCLVKIYPRVSHGW----TVRYN 218
P + + F + L+ A +K + P +HGW T+ YN
Sbjct: 192 QSMPLDQIHLFEKSLTEAGIKYTSEIYNNPSCAHGWVMGDTLMYN 236
>sp|P71505|DLHH_METEA Putative carboxymethylenebutenolidase OS=Methylobacterium
extorquens (strain ATCC 14718 / DSM 1338 / AM1)
GN=MexAM1_META1p1735 PE=3 SV=2
Length = 291
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 86/213 (40%), Gaps = 21/213 (9%)
Query: 46 ILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFF--YGDPIVDLNNPQFDREAWRKIHN 103
IL++ ++FG + + + ++A G+ +AP+ + GD N Q E K+ +
Sbjct: 81 ILVVQEIFGVHEHI-KDVCRRLAKLGYFALAPELYARQGDVSTLTNIQQIVSEVVSKVPD 139
Query: 104 TDKGYVDAKSVIAALKSKG---VSAIGAAGFCWGGVVAAKLASSHDIQAAVVLHPGAIT- 159
+ D + +A K G + +G GFCWGG + A+ + A V G +
Sbjct: 140 A-QVMSDLDAAVAFAKGTGKADTARLGITGFCWGGRITWLYAAHNPAVKAGVAWYGRLVG 198
Query: 160 ----------VDDINEIKVPVAILGAEIDHVSPPEDLKRFGEILSAKLKNDCLVKIYPRV 209
VD ++K PV L D P + R E A K C +YP
Sbjct: 199 DSSALMPKNPVDVAADLKAPVLGLYGGADQGIPVATIDRMKEACRAAGKT-CDFVVYPEA 257
Query: 210 SHGWTVRYNVEDEFAVKSAEEAHEDMINWLTKY 242
H + Y + + A++ + + +W +Y
Sbjct: 258 GHAFHADY--RPSYRAEPAQDGWKRLQDWFRQY 288
>sp|O67988|CLCD_RHOOP Carboxymethylenebutenolidase OS=Rhodococcus opacus GN=clcD PE=3
SV=1
Length = 252
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 88/222 (39%), Gaps = 16/222 (7%)
Query: 33 YVTGSGPPDSKSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFFYGDPIVDLNNPQ 92
Y+ S S I+L++D+FG P +R LA +A G VV PD F+ + +P
Sbjct: 30 YLHASSDTGSGDTIVLLTDIFGV-TPFYRHLAAMLAEKGHDVVIPDVFHR--VGHATDPG 86
Query: 93 FDREAWRKIHNTDKGYVDAKSVIAALKSKGVSAIGAAGFCWGGVVAAKLASSHDIQAAVV 152
D R+ D+ ++ A G GFC GG A A++H Q
Sbjct: 87 RDAALARRRQLDDRLAIEDIERTVAHTVDDQQTFGVLGFCLGGSFALLTAAAHPNQVTAT 146
Query: 153 LH------PGAIT-----VDDINEIKVPVAILGAEIDHVSPPEDLKRFGEILSAKLKNDC 201
+ PGA ++ + I PV D++ E++ + +IL A
Sbjct: 147 YYAFPKGAPGAKVPVKPPLEAADAIDGPVLCHWGRDDYID-HEEIDQLEQIL-ASAPGPS 204
Query: 202 LVKIYPRVSHGWTVRYNVEDEFAVKSAEEAHEDMINWLTKYV 243
++ Y H + + + +A ++ + + + +Y+
Sbjct: 205 EIRWYDNAGHSFLAGLTEPNHPSTAAAHDSWQRTVEFFERYL 246
>sp|Q9L6M9|DLHH_SALTY Putative carboxymethylenebutenolidase OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=ysgA PE=3 SV=1
Length = 270
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 91/211 (43%), Gaps = 18/211 (8%)
Query: 46 ILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFFY--GDPIVDLNNPQFDREAWRKIHN 103
++++ ++FG + R + ++A G+L +AP+ ++ GDP + P K+ +
Sbjct: 59 VIVVQEIFGVHEHI-RDICRRLALEGYLAIAPELYFREGDPNDFADIPTLLSGLVAKVPD 117
Query: 104 TD-KGYVDAKSVIAALKSKGVSAIGAAGFCWGGVVAAKLASSH-DIQAAVVLHPGAITVD 161
+ +D + A+ + GFCWGG + A+ + ++AAV + +
Sbjct: 118 SQVLADLDHVASWASRNGGDAHRLMITGFCWGGRITWLYAAHNPQLKAAVAWYGKLVGDT 177
Query: 162 DINEIKVPVAI---LGAEI-------DHVSPPEDLKRFGEILSAKLKNDCLVKIYPRVSH 211
+N K PV I L A + D P E ++ + L A +V +YP H
Sbjct: 178 SLNSPKHPVDIATDLNAPVLGLYGGQDTSIPQESVETMRQALRAANAKAEIV-VYPDAGH 236
Query: 212 GWTVRYNVEDEFAVKSAEEAHEDMINWLTKY 242
+ Y + SA++ + M+ W +Y
Sbjct: 237 AFNADY--RPGYHEASAKDGWQRMLEWFAQY 265
>sp|Q8Z3B8|DLHH_SALTI Putative carboxymethylenebutenolidase OS=Salmonella typhi GN=ysgA
PE=3 SV=1
Length = 270
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 91/211 (43%), Gaps = 18/211 (8%)
Query: 46 ILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFFY--GDPIVDLNNPQFDREAWRKIHN 103
++++ ++FG + R + ++A G+L +AP+ ++ GDP + P K+ +
Sbjct: 59 VIVVQEIFGVHEHI-RDICRRLALEGYLAIAPELYFREGDPNDFADIPTLLSGLVAKVPD 117
Query: 104 TD-KGYVDAKSVIAALKSKGVSAIGAAGFCWGGVVAAKLASSH-DIQAAVVLHPGAITVD 161
+ +D + A+ + GFCWGG + A+ + ++AAV + +
Sbjct: 118 SQVLADLDHVASWASRNGGDAHRLMITGFCWGGRITWLYAAHNPQLKAAVAWYGKLVGDT 177
Query: 162 DINEIKVPVAI---LGAEI-------DHVSPPEDLKRFGEILSAKLKNDCLVKIYPRVSH 211
+N K PV I L A + D P E ++ + L A +V +YP H
Sbjct: 178 SLNSPKHPVDIATDLNAPVLGLYSGQDTSIPQESVETMRQALRAANAKAEIV-VYPDAGH 236
Query: 212 GWTVRYNVEDEFAVKSAEEAHEDMINWLTKY 242
+ Y + SA++ + M+ W +Y
Sbjct: 237 AFNADY--RPGYHEASAKDGWQRMLEWFAQY 265
>sp|Q7DFU6|YGHX_ECOLI Putative uncharacterized protein YghX OS=Escherichia coli (strain
K12) GN=yghX PE=5 SV=3
Length = 278
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 89/202 (44%), Gaps = 35/202 (17%)
Query: 58 PLFRKLADKVAGAGFLVVAPDFFY---GDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSV 114
P +A +VA AG++ +APD G P N RE +++ T+ D +
Sbjct: 95 PYIEDVARRVAKAGYIALAPDGLSSVGGYP----GNDDKGRELQQQVDPTNL-MNDFFAA 149
Query: 115 IAALKS--KGVSAIGAAGFCWGGVVAAKLASSH-DIQAAVVLHPGAITVDDINEIKVPVA 171
I ++ + +G GFC+GG V+ A ++ ++ AV + D+ +I+ P+
Sbjct: 150 IEFMQRYPQATGKVGITGFCYGGGVSNAAAVAYPELACAVPFYGRQAPTADVAKIEAPLL 209
Query: 172 ILGAEIDHVSPPEDLKRFGE---ILSAKLKNDCLV---KIYPRVSHGW----TVRYNVED 221
+ AE+D R E A LK + V IYP V+HG+ T RY+
Sbjct: 210 LHFAELD--------TRINEGWPAYEAALKANNKVYEAYIYPGVNHGFHNDSTPRYDKS- 260
Query: 222 EFAVKSAEEAHEDMINWLTKYV 243
+A+ A + + W KY+
Sbjct: 261 -----AADLAWQRTLKWFDKYL 277
>sp|P95862|DLHH_SULSO Putative carboxymethylenebutenolidase OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
GN=SSO2087 PE=3 SV=1
Length = 257
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 110/248 (44%), Gaps = 53/248 (21%)
Query: 39 PPDSKSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFF-YGDPIVDLNNPQF---- 93
P + K A+++I +++G + + ++ ++A G++ +AP + + +++ N Q
Sbjct: 21 PENPKLAVIVIHEIWGLNDNI-KDISRRLANEGYMALAPQLYTRNEDVLNEGNIQNVMMK 79
Query: 94 ----------DREAWRKI-------------------HNTDKGYV-DAKSVIAALKSKGV 123
D ++++I T++ + DA + S+GV
Sbjct: 80 VWSIPPEKRNDPNSYQQIMSALDEKGKKVAELLVLNRQKTEEQMIKDAIKAYEYVSSQGV 139
Query: 124 SAIGAAGFCWGGVVAAKLASSHDIQAAVVLH-PGAITVDDINEIKVPVAILGAEIDHVSP 182
I + GFC GG +A +LA+ + +V + ++ I +IK P+ L A D P
Sbjct: 140 KKIVSMGFCMGGGLAFQLATEVPLDGTIVFYGRNPQPLEAIQKIKGPILGLYAGED---P 196
Query: 183 PEDLKRFGEILSA--KLKNDCLVKIYPRVSHGWT----VRYNVEDEFAVKSAEEAHEDMI 236
P D +++SA K K D +KIYP H + YN E +AE+A E +
Sbjct: 197 PIDAG-LPDLISAIIKYKKDLELKIYPGAYHAFFNDRGRSYNKE------AAEDAWERVK 249
Query: 237 NWLTKYVK 244
++L + K
Sbjct: 250 SFLRRVSK 257
>sp|P27136|TFDE1_CUPPJ Carboxymethylenebutenolidase 1 OS=Cupriavidus pinatubonensis
(strain JMP134 / LMG 1197) GN=tfdEI PE=3 SV=1
Length = 234
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 8/131 (6%)
Query: 20 GAGTVQQLGGLNTYVTGSGPPDSKSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDF 79
G + GG G DS +++ ++FG P R+ + + GAGF V PD
Sbjct: 5 GVEITSRSGGRFGAYLGKPTTDSAPIVVIAQEIFGI-TPFIRETVEWLVGAGFGCVCPDL 63
Query: 80 FYGD-PIVDLN-NPQFDRE---AWRKIHNTDKGYVDAKSVIAALKSKGVS--AIGAAGFC 132
++ P ++L+ N +RE A + + + G D I ++ S + G+C
Sbjct: 64 YWRQAPNIELDANVPSEREQALALFRDFDMEAGVNDLSCAIEYARALPFSNGRVAVVGYC 123
Query: 133 WGGVVAAKLAS 143
GG +A +A+
Sbjct: 124 LGGALAFDVAA 134
>sp|Q43914|DLHH_AZOBR Putative carboxymethylenebutenolidase OS=Azospirillum brasilense
PE=3 SV=1
Length = 231
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 83/201 (41%), Gaps = 25/201 (12%)
Query: 28 GGLNTYVT---GSGPPDSKSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFFY--- 81
G + YV G GP +++I ++FG + R L D A G+L V PD F+
Sbjct: 12 GSFSAYVAKPAGGGP---APGLVVIQEIFGVNQ-VMRDLCDAFAAQGWLAVCPDLFWRQE 67
Query: 82 -GDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSKGVSAIGAA------GFCWG 134
G I D +++R A+ ++ D+ D + + +G + I A G
Sbjct: 68 PGVQITDKTQEEWNR-AFALMNGMDQ---DKRWTTSRPPCRGCARIRIAPAKRVGRLLLG 123
Query: 135 GVVAAKLASSHDIQAAVVLHPGAI--TVDDINEIKVPVAILGAEIDHVSPPEDLKRFGEI 192
+A +A+ D A V + + V + I P+ + AE D P E ++ +
Sbjct: 124 RRLAFMMAARSDSDANVSYYGVGLDGLVGEAASITKPLLMHIAEKDQFVPAEAREKV--L 181
Query: 193 LSAKLKNDCLVKIYPRVSHGW 213
+ K + +YP V H +
Sbjct: 182 AAVKGNPNVTAHVYPGVDHAF 202
>sp|Q6D5Z2|NAPA_ERWCT Periplasmic nitrate reductase OS=Erwinia carotovora subsp.
atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=napA
PE=3 SV=1
Length = 828
Score = 35.0 bits (79), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Query: 77 PDFFYGD-----PIVDLNNPQFDREAWRKIHNTDKGY-VDAKSVIAALKSKGVSAIGAAG 130
P YG P++ + N QFD+E + DK + + A+ ALK KG +AIG G
Sbjct: 88 PKIMYGQDRLTQPLLRMRNGQFDKEGEFTPISWDKAFDIMAEKFKTALKEKGPNAIGMFG 147
Query: 131 ----FCWGGVVAAKL 141
W G +AKL
Sbjct: 148 SGQSTIWEGYASAKL 162
>sp|P73163|DLHH_SYNY3 Putative carboxymethylenebutenolidase OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=sll1298 PE=3 SV=1
Length = 246
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 83/204 (40%), Gaps = 39/204 (19%)
Query: 46 ILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFFYGDPIVDLNNPQFDR-------EAW 98
+++I ++FG + + R + ++VA G++ +AP I P F+ EA
Sbjct: 35 VIVIQEIFGVNSHI-RDVTERVAKEGYVAIAP------AIYQRQAPGFEEGYTPEGIEAG 87
Query: 99 RKIHNTDKG---YVDAKSVIA---ALKSKGVSAIGAAGFCWGGVVAAKLASSHDIQAAVV 152
RK+ + D ++ IA L + +G GFC+GG + AS ++A
Sbjct: 88 RKLKDQTSSAEILSDLEATIAYAQTLPNVKPEEVGLIGFCFGGWIVYLGASLPTVKATAS 147
Query: 153 LH--------PGA----ITVDDINEIKVPVAILGAEIDHVSPPEDLKRFGEILSAKLKND 200
+ PG IT D + + A G E D P D ++ + L+ N
Sbjct: 148 FYGAGIPHWAPGTAEPPITYTDKIQGTL-YAFFGLE-DTSIPMADTEQIEQALTKYQVNH 205
Query: 201 CLVKIYPRVSHGW----TVRYNVE 220
+ + YP HG+ YN E
Sbjct: 206 KIFR-YPGADHGFFCDQRASYNAE 228
>sp|Q21KW2|QUEA_SACD2 S-adenosylmethionine:tRNA ribosyltransferase-isomerase
OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 /
DSM 17024) GN=queA PE=3 SV=1
Length = 350
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 15/98 (15%)
Query: 84 PIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSKGVSAIGAAGFCWGGVVAAKLAS 143
P +D + D+E ++ ++ T KG V A + AG + V+ AKL
Sbjct: 149 PYIDREDEADDKERYQTVYGTQKGAVAAPT---------------AGLHFDDVLLAKLKD 193
Query: 144 SHDIQAAVVLHPGAITVDDINEIKVPVAILGAEIDHVS 181
QA V LH GA T + + + +E+ HVS
Sbjct: 194 KGVQQAFVTLHVGAGTFQPVRVDNIFEHHMHSEVMHVS 231
>sp|A1TZN6|QUEA_MARAV S-adenosylmethionine:tRNA ribosyltransferase-isomerase
OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM
11845 / VT8) GN=queA PE=3 SV=1
Length = 366
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 32/116 (27%)
Query: 84 PIVDLNNPQFDREAWRKIHNTDKGYVDAKS--------VIAALKSKGVSAIGAAGFCWGG 135
P ++ + Q DRE ++ ++ + G V A + V++ALK+KG+ F +
Sbjct: 149 PYMEREDEQSDRERYQTVYAKEAGAVAAPTAGLHFDDVVLSALKAKGIE------FAY-- 200
Query: 136 VVAAKLASSHDIQAAVVLHPGAITVDDINEIKVPVAILGAEIDHVSPPEDLKRFGE 191
V LH GA T + K+ ++ +EI HV P E +K E
Sbjct: 201 ---------------VTLHVGAGTFQPVRVDKIEDHVMHSEIAHV-PEETVKAVNE 240
>sp|Q80950|VE1_HPV61 Replication protein E1 OS=Human papillomavirus type 61 GN=E1 PE=3
SV=1
Length = 652
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 46 ILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFFYGDPIVDLNNPQ---FDREAWRKIH 102
+++ +++ E P F+ L ++ FL P GDP+ LNN F R +W +I
Sbjct: 561 LMITTNINPLEDPTFKYLHSRIVVFQFLHKCPLNSNGDPVYTLNNENWKSFFRRSWARIE 620
Query: 103 NT 104
+
Sbjct: 621 GS 622
>sp|P51584|XYNY_CLOTM Endo-1,4-beta-xylanase Y OS=Clostridium thermocellum GN=xynY PE=1
SV=1
Length = 1077
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 65/140 (46%), Gaps = 13/140 (9%)
Query: 104 TDKGYVDAKSVIAALKSKGVSAIGAAGFCWGGVVAAKLASSHDIQAAVVLHPGAITVDDI 163
T KG +A +V AA + + + A F G V+ + ++ I+A ++ +IT +
Sbjct: 178 TRKGMAEANTVYAA--NAVLKDMYANYFRVGSVLNSGTVNNSSIKALILREFNSITCE-- 233
Query: 164 NEIKVPVAILGAEIDHVSPPEDLKRFGEILSAKLKNDCLVKIYPRVSHGWTVRYNVEDEF 223
NE+K ++ + + + L R IL+ +N+ V+ + V H T ++ +D F
Sbjct: 234 NEMKPDATLVQSGSTNTNIRVSLNRAASILNFCAQNNIAVRGHTLVWHSQTPQWFFKDNF 293
Query: 224 AVKSAEEAHEDMINWLTKYV 243
+D NW+++ V
Sbjct: 294 ---------QDNGNWVSQSV 304
>sp|P0A115|CLCD_PSESB Carboxymethylenebutenolidase OS=Pseudomonas sp. (strain B13)
GN=clcD PE=1 SV=1
Length = 236
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/205 (19%), Positives = 82/205 (40%), Gaps = 16/205 (7%)
Query: 46 ILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFFYGDPIVDLNNPQFDREA------WR 99
I++ ++FG A R+ + G+ V PD + +PQ +R+ W+
Sbjct: 31 IVIAQEIFGVNA-FMRETVSWLVDQGYAAVCPDLYARQAPGTALDPQDERQREQAYKLWQ 89
Query: 100 KIHNTDKGYVDAKSVIAALKSKGVS--AIGAAGFCWGGVVAAKLASSHDIQAAVVLHPGA 157
+ + G D ++ I + + S +G G+C GG +A +A+ + AV +
Sbjct: 90 AF-DMEAGVGDLEAAIRYARHQPYSNGKVGLVGYCLGGALAFLVAAKGYVDRAVGYYGVG 148
Query: 158 I--TVDDINEIKVPVAILGAEIDHVSPPEDLKRFGEILSAKLKNDCLVKIYPRVSHGWTV 215
+ + + E+K P DH P + E A + L++++ G +
Sbjct: 149 LEKQLKKVPEVKHPALFHMGGQDHFVPAPSRQLITEGFGA----NPLLQVHWYEEAGHSF 204
Query: 216 RYNVEDEFAVKSAEEAHEDMINWLT 240
+ +A A+E +++L
Sbjct: 205 ARTSSSGYVASAAALANERRLDFLA 229
>sp|P0A114|CLCD_PSEPU Carboxymethylenebutenolidase OS=Pseudomonas putida GN=clcD PE=1
SV=1
Length = 236
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/205 (19%), Positives = 82/205 (40%), Gaps = 16/205 (7%)
Query: 46 ILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFFYGDPIVDLNNPQFDREA------WR 99
I++ ++FG A R+ + G+ V PD + +PQ +R+ W+
Sbjct: 31 IVIAQEIFGVNA-FMRETVSWLVDQGYAAVCPDLYARQAPGTALDPQDERQREQAYKLWQ 89
Query: 100 KIHNTDKGYVDAKSVIAALKSKGVS--AIGAAGFCWGGVVAAKLASSHDIQAAVVLHPGA 157
+ + G D ++ I + + S +G G+C GG +A +A+ + AV +
Sbjct: 90 AF-DMEAGVGDLEAAIRYARHQPYSNGKVGLVGYCLGGALAFLVAAKGYVDRAVGYYGVG 148
Query: 158 I--TVDDINEIKVPVAILGAEIDHVSPPEDLKRFGEILSAKLKNDCLVKIYPRVSHGWTV 215
+ + + E+K P DH P + E A + L++++ G +
Sbjct: 149 LEKQLKKVPEVKHPALFHMGGQDHFVPAPSRQLITEGFGA----NPLLQVHWYEEAGHSF 204
Query: 216 RYNVEDEFAVKSAEEAHEDMINWLT 240
+ +A A+E +++L
Sbjct: 205 ARTSSSGYVASAAALANERRLDFLA 229
>sp|Q07505|DLHH_YEAST Putative carboxymethylenebutenolidase OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YDL086W PE=1 SV=1
Length = 273
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 15/133 (11%)
Query: 37 SGPPDSK-SAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFF----------YGDPI 85
+G P +K ++L S+++ P+ R+ ++A G++VVAP + Y
Sbjct: 28 AGYPQAKFPGVILYSEIYQVTGPV-RRFGQRIASEGYVVVAPAIYHNFMGPEALPYDVQG 86
Query: 86 VDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSKGVSAIGAAGFCWGGVVAAKLASSH 145
D+ N ++ +K D + K IG+ G C GG +A +
Sbjct: 87 TDIGNEYKIKKPLESYDEDNKLCCDLLFQLPQFDGK---RIGSTGMCLGGHLAFRALLDK 143
Query: 146 DIQAAVVLHPGAI 158
+ A P I
Sbjct: 144 RVTCATCFFPTDI 156
>sp|C6DK59|NAPA_PECCP Periplasmic nitrate reductase OS=Pectobacterium carotovorum subsp.
carotovorum (strain PC1) GN=napA PE=3 SV=1
Length = 828
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 57/139 (41%), Gaps = 31/139 (22%)
Query: 14 SPGSGCGAGTVQQLGGLNTYVTGS-GPPDSKSAILLISDVFGYEAPLFRKLADKVAGAGF 72
+P CG G +G N + S G PD AP+ R L G+
Sbjct: 44 APCRFCGVGCGVLVGTQNGRIVASQGDPD---------------APVNRGLN---CIKGY 85
Query: 73 LVVAPDFFYGD-----PIVDLNNPQFDREAWRKIHNTDKGY-VDAKSVIAALKSKGVSAI 126
+ P YG P++ + + +FD+E + DK + + A+ ALK KG +AI
Sbjct: 86 FL--PKIMYGQDRLTQPLLRMRDGKFDKEGEFTPISWDKAFDIMAEKFKTALKEKGPNAI 143
Query: 127 GAAG----FCWGGVVAAKL 141
G G W G AAKL
Sbjct: 144 GMFGSGQSTIWEGYAAAKL 162
>sp|P65700|PGK_MYCTU Phosphoglycerate kinase OS=Mycobacterium tuberculosis GN=pgk PE=3
SV=1
Length = 412
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Query: 40 PDSKSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFFYGDPIVDLNNPQFDREAWR 99
PD ++ ++ G + +LA V GA L A GD I+ L N +FD+
Sbjct: 71 PDPTLSLAPVAVALGEQLGRHVQLAGDVVGADALARAEGLTGGD-ILLLENIRFDKRETS 129
Query: 100 KIHNTDKGYVDAKSVIAALKSKGVSAIGAAGFCWGGVVAAKLASSHDIQAAVVLHPGAIT 159
K N D AK ++ + + GV + GF GVV K AS +DI + + G +
Sbjct: 130 K--NDDDRRALAKQLVELVGTGGVFV--SDGF---GVVHRKQASVYDIATLLPHYAGTLV 182
Query: 160 VDDINEIK 167
D++ ++
Sbjct: 183 ADEMRVLE 190
>sp|A5U2D9|PGK_MYCTA Phosphoglycerate kinase OS=Mycobacterium tuberculosis (strain ATCC
25177 / H37Ra) GN=pgk PE=3 SV=1
Length = 412
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Query: 40 PDSKSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFFYGDPIVDLNNPQFDREAWR 99
PD ++ ++ G + +LA V GA L A GD I+ L N +FD+
Sbjct: 71 PDPTLSLAPVAVALGEQLGRHVQLAGDVVGADALARAEGLTGGD-ILLLENIRFDKRETS 129
Query: 100 KIHNTDKGYVDAKSVIAALKSKGVSAIGAAGFCWGGVVAAKLASSHDIQAAVVLHPGAIT 159
K N D AK ++ + + GV + GF GVV K AS +DI + + G +
Sbjct: 130 K--NDDDRRALAKQLVELVGTGGVFV--SDGF---GVVHRKQASVYDIATLLPHYAGTLV 182
Query: 160 VDDINEIK 167
D++ ++
Sbjct: 183 ADEMRVLE 190
>sp|C1AN82|PGK_MYCBT Phosphoglycerate kinase OS=Mycobacterium bovis (strain BCG / Tokyo
172 / ATCC 35737 / TMC 1019) GN=pgk PE=3 SV=1
Length = 412
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Query: 40 PDSKSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFFYGDPIVDLNNPQFDREAWR 99
PD ++ ++ G + +LA V GA L A GD I+ L N +FD+
Sbjct: 71 PDPTLSLAPVAVALGEQLGRHVQLAGDVVGADALARAEGLTGGD-ILLLENIRFDKRETS 129
Query: 100 KIHNTDKGYVDAKSVIAALKSKGVSAIGAAGFCWGGVVAAKLASSHDIQAAVVLHPGAIT 159
K N D AK ++ + + GV + GF GVV K AS +DI + + G +
Sbjct: 130 K--NDDDRRALAKQLVELVGTGGVFV--SDGF---GVVHRKQASVYDIATLLPHYAGTLV 182
Query: 160 VDDINEIK 167
D++ ++
Sbjct: 183 ADEMRVLE 190
>sp|A1KIM6|PGK_MYCBP Phosphoglycerate kinase OS=Mycobacterium bovis (strain BCG /
Pasteur 1173P2) GN=pgk PE=3 SV=1
Length = 412
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Query: 40 PDSKSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFFYGDPIVDLNNPQFDREAWR 99
PD ++ ++ G + +LA V GA L A GD I+ L N +FD+
Sbjct: 71 PDPTLSLAPVAVALGEQLGRHVQLAGDVVGADALARAEGLTGGD-ILLLENIRFDKRETS 129
Query: 100 KIHNTDKGYVDAKSVIAALKSKGVSAIGAAGFCWGGVVAAKLASSHDIQAAVVLHPGAIT 159
K N D AK ++ + + GV + GF GVV K AS +DI + + G +
Sbjct: 130 K--NDDDRRALAKQLVELVGTGGVFV--SDGF---GVVHRKQASVYDIATLLPHYAGTLV 182
Query: 160 VDDINEIK 167
D++ ++
Sbjct: 183 ADEMRVLE 190
>sp|P65701|PGK_MYCBO Phosphoglycerate kinase OS=Mycobacterium bovis (strain ATCC BAA-935
/ AF2122/97) GN=pgk PE=3 SV=1
Length = 412
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Query: 40 PDSKSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFFYGDPIVDLNNPQFDREAWR 99
PD ++ ++ G + +LA V GA L A GD I+ L N +FD+
Sbjct: 71 PDPTLSLAPVAVALGEQLGRHVQLAGDVVGADALARAEGLTGGD-ILLLENIRFDKRETS 129
Query: 100 KIHNTDKGYVDAKSVIAALKSKGVSAIGAAGFCWGGVVAAKLASSHDIQAAVVLHPGAIT 159
K N D AK ++ + + GV + GF GVV K AS +DI + + G +
Sbjct: 130 K--NDDDRRALAKQLVELVGTGGVFV--SDGF---GVVHRKQASVYDIATLLPHYAGTLV 182
Query: 160 VDDINEIK 167
D++ ++
Sbjct: 183 ADEMRVLE 190
>sp|P94136|TFDE2_CUPPJ Carboxymethylenebutenolidase 2 OS=Cupriavidus pinatubonensis
(strain JMP134 / LMG 1197) GN=tfdEII PE=3 SV=1
Length = 235
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 70/173 (40%), Gaps = 17/173 (9%)
Query: 6 CFENPPKLSPGSGCGAGTVQQLGGLNTYVTGSGPPDSKSAILLISDVFGYEAPLFRKLAD 65
C + P L P + + L GP +L++ D++G A +R A
Sbjct: 2 CHDTAPALFPRTASTGSIDGAICALCYAGATRGP-----RLLVLPDIYGCNA-FYRGYAA 55
Query: 66 KVA--GAG-FLVVAPDFFYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSKG 122
+A GAG L+V P +G+ F R + D+ YV+ +I + +
Sbjct: 56 YLAEQGAGEVLLVDPFAAFGELATVTREAAFQR----RHRLADRAYVE--ELIDFIDGQR 109
Query: 123 VSAIGAAGFCWGGVVAAKLASSHDIQAAVVLHPGAITVDDINEIKVPVAILGA 175
+ G GFC GG+ +LA + V +P +++ + + VP L A
Sbjct: 110 IE--GVVGFCLGGLFVFELARQQVVSRLVAYYPFPQGLENRDPLDVPFDYLPA 160
>sp|P25026|PRXC_PSEPY Non-heme chloroperoxidase OS=Pseudomonas pyrrocinia GN=cpo PE=1
SV=3
Length = 278
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 160 VDDINEIKVPVAILGAEIDHVSPPEDLKRFGEILSAKLKNDCLVKIYPRVSHG 212
+D+ I VP +L E D + P D + S KL + +K YP SHG
Sbjct: 211 TEDLKSITVPTLVLHGEDDQIVPIAD----AALKSIKLLQNGTLKTYPGYSHG 259
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,122,436
Number of Sequences: 539616
Number of extensions: 4294478
Number of successful extensions: 11696
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 11656
Number of HSP's gapped (non-prelim): 45
length of query: 247
length of database: 191,569,459
effective HSP length: 114
effective length of query: 133
effective length of database: 130,053,235
effective search space: 17297080255
effective search space used: 17297080255
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)