BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025843
(247 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LDY9|IOJAC_ARATH Protein Iojap, chloroplastic OS=Arabidopsis thaliana GN=IJ PE=2
SV=1
Length = 238
Score = 291 bits (746), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 153/244 (62%), Positives = 177/244 (72%), Gaps = 13/244 (5%)
Query: 1 MIASATLSLAGAVSGTRFTCEFHPLGRLETKLSHKPRKHVEWF-CINGHHLLN-CKCFWQ 58
M +S L++AGA+ F RL S PRK C++ L + C W+
Sbjct: 1 MASSTGLTVAGALLAGDF--------RLPAVSSLIPRKTSSSLSCLSNRDLSSPYNCCWR 52
Query: 59 IPRSRNSINFKPRDLPLHFAYGKDAEDSSLSNVSEDTDEMFDNLLNKYGKVVYRRNDQKS 118
+ R + + FA GK+AED LSNVSEDTDEMFD+L NKYGKVV+R D KS
Sbjct: 53 LSRGKILTSLSNSR---KFAVGKEAEDGFLSNVSEDTDEMFDDLFNKYGKVVFRSTDVKS 109
Query: 119 PAAEIDDDAESLSFAVAMARVVSDVKAADIKVLFVKPLVYWTHFFIIATAFSRPQIDAIG 178
P AE+DDDAESL+FAV +A+V SDVKA DIKVLFVKPLVYWT FFIIATAFSRPQIDAIG
Sbjct: 110 PTAEVDDDAESLAFAVELAKVASDVKAGDIKVLFVKPLVYWTRFFIIATAFSRPQIDAIG 169
Query: 179 SRIRDLAEKEYGKVPSGDSKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATTIELP 238
SR+RDLAEK+YGKV +GD KPNSWTLLDFGDVVIH+FLP QR FYNLE+FYGNA IELP
Sbjct: 170 SRMRDLAEKKYGKVANGDVKPNSWTLLDFGDVVIHLFLPPQRTFYNLEDFYGNAMQIELP 229
Query: 239 FENQ 242
FE+Q
Sbjct: 230 FEDQ 233
>sp|Q41822|IOJAP_MAIZE Protein Iojap, chloroplast OS=Zea mays GN=Ij PE=1 SV=1
Length = 228
Score = 213 bits (543), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 98/151 (64%), Positives = 121/151 (80%)
Query: 92 SEDTDEMFDNLLNKYGKVVYRRNDQKSPAAEIDDDAESLSFAVAMARVVSDVKAADIKVL 151
+D D++ ++LL ++G+VVY P E DDDAE LSFAV++A+ S++KA DI+VL
Sbjct: 76 GDDADKLLEDLLKQHGEVVYSSGGPPDPTVEADDDAECLSFAVSLAKAASEIKATDIRVL 135
Query: 152 FVKPLVYWTHFFIIATAFSRPQIDAIGSRIRDLAEKEYGKVPSGDSKPNSWTLLDFGDVV 211
V+ LVYWT FFII TAFS QIDAI S++RD+ EK++ KV SGD+KPNSWTLLDFGDVV
Sbjct: 136 CVRRLVYWTRFFIILTAFSNAQIDAISSKMRDIGEKQFSKVASGDTKPNSWTLLDFGDVV 195
Query: 212 IHIFLPQQRAFYNLEEFYGNATTIELPFENQ 242
+HIFLPQQRAFYNLEEFYGNAT IELPF+ Q
Sbjct: 196 VHIFLPQQRAFYNLEEFYGNATPIELPFDTQ 226
>sp|P73658|IOJAP_SYNY3 Ribosomal silencing factor RsfS OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rsfS PE=1 SV=1
Length = 154
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 63/100 (63%), Gaps = 4/100 (4%)
Query: 136 MARVVSDVKAADIKVLFVKPLVYWTHFFIIATAFSRPQIDAIGSRIRDLAEKEYGKVPS- 194
+A+ + KA D+ +L V + Y +F+I T FSR Q+ AI I E +G++P+
Sbjct: 34 IAQAAEERKAGDLVILKVTDVSYLADYFVICTGFSRTQVRAIADNIEKQVELVHGQLPTH 93
Query: 195 --GDSKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNA 232
G+S+ + W L DFGDV++H F+P++R FY LE F+G+A
Sbjct: 94 TEGNSE-SIWVLQDFGDVLVHTFMPEEREFYKLEAFWGHA 132
>sp|Q9KD89|IOJAP_BACHD Ribosomal silencing factor RsfS OS=Bacillus halodurans (strain ATCC
BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=rsfS PE=1 SV=1
Length = 117
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 4/114 (3%)
Query: 126 DAESLSFAVAMARVVSDVKAADIKVLFVKPLVYWTHFFIIATAFSRPQIDAIGSRIRDLA 185
+ E L AV V D KA + L +K + FF+I S Q+ AI ++ +A
Sbjct: 3 NQELLQLAV---NAVDDKKAEQVVALNMKGISLIADFFLICHGNSEKQVQAIAHELKKVA 59
Query: 186 EKEYGKVPSGDSKPNS-WTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATTIELP 238
+++ ++ + + W L+D GDVV+H+F +RA+YNLE+ +G+A T+EL
Sbjct: 60 QEQGIEIKRLEGYEQARWVLIDLGDVVVHVFHKDERAYYNLEKLWGDAPTVELE 113
>sp|Q97P97|IOJAP_STRPN Ribosomal silencing factor RsfS OS=Streptococcus pneumoniae
serotype 4 (strain ATCC BAA-334 / TIGR4) GN=rsfS PE=1
SV=1
Length = 117
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 57/97 (58%), Gaps = 3/97 (3%)
Query: 144 KAADIKVLFVKPLVYWTHFFIIATAFSRPQIDAIGSRIRD-LAEKEY-GKVPSGDSKPNS 201
+A DI L V+ L T + +I ++ + Q+DAI + IR+ +A+ + G GD+
Sbjct: 18 RAEDILALDVQDLTSVTDYLVITSSMNSRQLDAIAANIREKVAQAGFKGSHVEGDA-AGG 76
Query: 202 WTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATTIELP 238
W LLD G VV+HIF + RA YNLE+ + A ++++
Sbjct: 77 WVLLDLGAVVVHIFSEEMRAHYNLEKLWHEANSVDIS 113
>sp|Q5NLX3|IOJAP_ZYMMO Ribosomal silencing factor RsfS OS=Zymomonas mobilis subsp. mobilis
(strain ATCC 31821 / ZM4 / CP4) GN=rsfS PE=1 SV=1
Length = 133
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 162 FFIIATAFSRPQIDAIGSRIRDLAEKEYGKVPSGDSKPNS-WTLLDFGDVVIHIFLPQQR 220
+ +IA+ S Q+ A+ ++ D + G V + P + W LLD GD++IH+F P+ R
Sbjct: 49 YMVIASGRSSRQVTAMAQKLADRIKAATGYVSKIEGLPAADWVLLDAGDIIIHLFRPEVR 108
Query: 221 AFYNLEEFYG 230
+FYNLE +G
Sbjct: 109 SFYNLERMWG 118
>sp|Q7P0P8|IOJAP_CHRVO Ribosomal silencing factor RsfS OS=Chromobacterium violaceum
(strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 /
NCIMB 9131 / NCTC 9757) GN=rsfS PE=1 SV=1
Length = 122
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 140 VSDVKAADIKVLFVKPLVYWTHFFIIATAFSRPQIDAIGSRIR-DLAEKEYGKVPSGDSK 198
+ D+K DI L L I+AT S Q+ A+ + ++ L E V S +
Sbjct: 14 LEDIKGKDIIELDTSKLTSLFQRMIVATGDSNRQVKALANSVQVKLKEAGVDIVGSEGHE 73
Query: 199 PNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGN 231
W L+D GDVV+H+ LP R +Y++E +G
Sbjct: 74 SGEWVLVDAGDVVVHVMLPAVRDYYDIEALWGG 106
>sp|Q96EH3|MASU1_HUMAN Mitochondrial assembly of ribosomal large subunit protein 1 OS=Homo
sapiens GN=MALSU1 PE=1 SV=1
Length = 234
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 136 MARVVSDVKAADIKVLFVKPLVYWTHFFIIATAFSRPQIDAIGSRI----RDLAEKEYGK 191
M ++ A DI V+ V P + +T +F+I + S + A+ + + L K
Sbjct: 97 MVSLLRQENARDICVIQVPPEMRYTDYFVIVSGTSTRHLHAMAFYVVKMYKHLKCKRDPH 156
Query: 192 VPSGDSKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFY 229
V + W +DFG +VIH+ LP+ R Y LE+ +
Sbjct: 157 VKIEGKDTDDWLCVDFGSMVIHLMLPETREIYELEKLW 194
>sp|P54457|IOJAP_BACSU Ribosomal silencing factor RsfS OS=Bacillus subtilis (strain 168)
GN=rsfS PE=3 SV=1
Length = 118
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 137 ARVVSDVKAADIKVLFVKPLVYWTHFFIIATAFSRPQIDAIGSRIRDLAEKEYGKVPSGD 196
A D +A DI L ++ + +F+I S Q+ AI I+D A++ +V +
Sbjct: 11 AAACDDKRAEDILALDMEGISLVADYFLICHGNSDKQVQAIAREIKDQADENGIQVKKME 70
Query: 197 S-KPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATTIELPF 239
W L+D GDVV+H+F +R++YNLE+ +G+A +L F
Sbjct: 71 GFDEARWVLVDLGDVVVHVFHKDERSYYNLEKLWGDAPLADLDF 114
>sp|P0AAT8|IOJAP_SHIFL Ribosomal silencing factor RsfS OS=Shigella flexneri GN=rsfS PE=3
SV=1
Length = 105
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 140 VSDVKAADIKVLFVKPLVYWTHFFIIATAFSRPQIDAIGSRIRDLAEKEYGKVPSGDSKP 199
+ D+K DI L V+ T II T S + +I + + G +P G
Sbjct: 14 IDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVVQ-ESRAAGLLPLGVEGE 72
Query: 200 NS--WTLLDFGDVVIHIFLPQQRAFYNLEEFY 229
NS W ++D GDV++H+ + R Y LE+ +
Sbjct: 73 NSADWIVVDLGDVIVHVMQEESRRLYELEKLW 104
>sp|P0AAT6|IOJAP_ECOLI Ribosomal silencing factor RsfS OS=Escherichia coli (strain K12)
GN=rsfS PE=1 SV=1
Length = 105
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 140 VSDVKAADIKVLFVKPLVYWTHFFIIATAFSRPQIDAIGSRIRDLAEKEYGKVPSGDSKP 199
+ D+K DI L V+ T II T S + +I + + G +P G
Sbjct: 14 IDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVVQ-ESRAAGLLPLGVEGE 72
Query: 200 NS--WTLLDFGDVVIHIFLPQQRAFYNLEEFY 229
NS W ++D GDV++H+ + R Y LE+ +
Sbjct: 73 NSADWIVVDLGDVIVHVMQEESRRLYELEKLW 104
>sp|P0AAT7|IOJAP_ECOL6 Ribosomal silencing factor RsfS OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=rsfS PE=3 SV=1
Length = 105
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 140 VSDVKAADIKVLFVKPLVYWTHFFIIATAFSRPQIDAIGSRIRDLAEKEYGKVPSGDSKP 199
+ D+K DI L V+ T II T S + +I + + G +P G
Sbjct: 14 IDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVVQ-ESRAAGLLPLGVEGE 72
Query: 200 NS--WTLLDFGDVVIHIFLPQQRAFYNLEEFY 229
NS W ++D GDV++H+ + R Y LE+ +
Sbjct: 73 NSADWIVVDLGDVIVHVMQEESRRLYELEKLW 104
>sp|Q9CWV0|MASU1_MOUSE Mitochondrial assembly of ribosomal large subunit protein 1 OS=Mus
musculus GN=Malsu1 PE=2 SV=1
Length = 228
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 145 AADIKVLFVKPLVYWTHFFIIATAFSRPQIDAIGSRIRDLAEK------EYGKVPSGDSK 198
A DI V+ V P + +T +F+I + S + A+ + + + Y K+ D+
Sbjct: 100 ARDICVIQVPPEMRYTDYFVIGSGTSTRHLHAMVHYLVKMYKHLKCRSDPYVKIEGKDA- 158
Query: 199 PNSWTLLDFGDVVIHIFLPQQRAFYNLEEFY 229
+ W +DFG +VIH+ LP+ R Y LE+ +
Sbjct: 159 -DDWLCVDFGSMVIHLMLPETRETYELEKLW 188
>sp|Q9CAF9|IOJAM_ARATH Protein Iojap-related, mitochondrial OS=Arabidopsis thaliana
GN=At1g67620 PE=2 SV=1
Length = 184
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 136 MARVVSDVKAADIKVLFVKPLVYWTHFFIIATAFSRPQIDAIGSRIRDLA-EKEYGK--- 191
+ ++++DVKA ++ V+ +W F +IAT S + I + A +K+ G
Sbjct: 50 VEKILADVKADNVTVIPTHNHCFWADFTVIATGRSDWHLRNIAQALVYRAKQKQKGAKHV 109
Query: 192 -VPSGDSKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYG 230
+PS + W ++D+G V+H + R ++NLE +
Sbjct: 110 MLPSVQGYNSKWIVIDYGKFVVHALDEKARGYFNLESLWS 149
>sp|O83720|IOJAP_TREPA Ribosomal silencing factor RsfS OS=Treponema pallidum (strain
Nichols) GN=rsfS PE=1 SV=1
Length = 111
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 17/106 (16%)
Query: 133 AVAMARVVSDVKAADIKVLFVKPLVYWTHFFIIATA---------FSRPQIDAIGSRIRD 183
A A+A + D +A D+ V V W F ++AT Q G +R+
Sbjct: 7 ASAVAEALCDARAEDVCVFDVSARCGWADFAVVATVPGLLHGTHRLVCEQAARFG--LRE 64
Query: 184 LAEKEYGKVPSGDSKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFY 229
+ K+ G W +LDFG +++H+ Q RAFY+L+ +
Sbjct: 65 VHRKKRGLCE------EQWRVLDFGSILVHLMSAQARAFYDLDRLW 104
>sp|P44471|IOJAP_HAEIN Ribosomal silencing factor RsfS OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rsfS PE=3 SV=1
Length = 102
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 143 VKAADIKVLFVKPLVYWTHFFIIATAFSRPQIDAIGSRIRDLAE-KEYGKVPSGDSKPNS 201
+K DI V+ T II T S Q+ A+ + + E K+ G G+ N+
Sbjct: 14 LKGTDIVHFDVRGKSSITDNMIICTGTSSRQVSAMADNL--ITECKKAGFETFGEEGKNT 71
Query: 202 --WTLLDFGDVVIHIFLPQQRAFYNLEEFY 229
W ++D G ++HI R Y LE+ +
Sbjct: 72 ADWIVVDLGQAIVHIMQRDAREMYQLEKLW 101
>sp|A8GCT3|RUTD_SERP5 Putative aminoacrylate hydrolase RutD OS=Serratia proteamaculans
(strain 568) GN=rutD PE=3 SV=1
Length = 267
Score = 34.3 bits (77), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 166 ATAFSRPQIDAIGSRIRDLAEKEYGKVPSGDSKPNSWTLLDFGDVVIHIF 215
A +F +PQI+A+G R + +G S S P+ +++ D D V +
Sbjct: 25 AGSFWQPQINALGEHFRVVVYDHFGTARSKGSVPDGYSMADMADEVAQLL 74
>sp|A1JMX1|RUTD_YERE8 Putative aminoacrylate hydrolase RutD OS=Yersinia enterocolitica
serotype O:8 / biotype 1B (strain 8081) GN=rutD PE=3
SV=1
Length = 278
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 169 FSRPQIDAIGSRIRDLAEKEYGKVPSGDSKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEF 228
F +PQ+ A+G R + +YG S P+ +TL D D + + Q Y+ F
Sbjct: 28 FWQPQLSALGQHFRVITYDQYGTGRSAGVIPSGYTLADMADELADLLASQHIERYH---F 84
Query: 229 YGNA 232
G+A
Sbjct: 85 VGHA 88
>sp|P34523|YM62_CAEEL Uncharacterized protein K12H4.2 OS=Caenorhabditis elegans
GN=K12H4.2 PE=3 SV=2
Length = 190
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 15/134 (11%)
Query: 127 AESLSFAVAMARVVSDVKAADIKVLFVKP--LVYWTHFFIIATAFSRPQIDAIGSRIRDL 184
+E F + ++D +A D+ V+ + + +TH II +AF+ Q AI +R L
Sbjct: 58 SEDADFVENVVGALTDQRAKDVFVVKSEETEMTPYTHK-IICSAFNSRQASAISENLRSL 116
Query: 185 ------AEKEYGKVPSGDSKPNSWTLLDFGDVVIHIFLPQQRAFYNLEEFYGNATTI--E 236
+ + N W + + V +H+ + R Y+LE + I E
Sbjct: 117 LKIDGVSNGSMSHARRSTKRSNGWYVSEVERVQVHVMSEECREKYDLEAIWAGDDRILDE 176
Query: 237 LPFENQ----PPFR 246
+ E Q PP R
Sbjct: 177 IDEEKQKILLPPRR 190
>sp|P50494|PVDG_PLAKN Duffy receptor gamma form OS=Plasmodium knowlesi PE=4 SV=1
Length = 1070
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 14/89 (15%)
Query: 160 THF---FIIATAFSRPQ-IDAIGSRIRDLAEKEYGKVPSGD-SKPNSWTLLDFGDVVIHI 214
THF I ++SR + I +G R DL K+Y V S D K W+L DFGD+++
Sbjct: 255 THFHSDIIFRKSYSRRRLIYDVGGR-GDLLLKKYNNVYSEDLCKDIKWSLQDFGDIIMGT 313
Query: 215 FLPQQRAFY------NLEEFYGNATTIEL 237
+ + Y NL +G T+ EL
Sbjct: 314 DM--EGIGYSLVVQNNLRSIFGTGTSAEL 340
>sp|P43264|QCR1_EUGGR Ubiquinol-cytochrome-c reductase complex core protein I,
mitochondrial OS=Euglena gracilis PE=2 SV=1
Length = 494
Score = 32.0 bits (71), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 165 IATAFSRPQIDAIGS------RIRDLAEKEYGKVPSGDSKPNSWTLLDFGD 209
+ T ++ P++ +GS ++ DLA K +G +P+G KP+ +T GD
Sbjct: 200 VKTHYTGPRMALVGSGAVDHGQLCDLASKYFGALPTGQPKPSGFTRFLGGD 250
>sp|Q54B67|MCFZ_DICDI Mitochondrial substrate carrier family protein Z OS=Dictyostelium
discoideum GN=mcfZ PE=2 SV=1
Length = 301
Score = 31.2 bits (69), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 9 LAGAVSGTRFTCEFHPLGRLETKLSHKPRKHV 40
+AGAV+GT HPL R++T+L + P K +
Sbjct: 21 VAGAVAGTADVWACHPLDRIKTQLQNNPGKSI 52
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,110,986
Number of Sequences: 539616
Number of extensions: 3939250
Number of successful extensions: 8729
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 8705
Number of HSP's gapped (non-prelim): 25
length of query: 247
length of database: 191,569,459
effective HSP length: 114
effective length of query: 133
effective length of database: 130,053,235
effective search space: 17297080255
effective search space used: 17297080255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)