Query 025844
Match_columns 247
No_of_seqs 369 out of 3269
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 10:11:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025844.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025844hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1533 Predicted GTPase [Gene 100.0 1.6E-56 3.5E-61 374.0 17.0 243 1-245 1-252 (290)
2 KOG1534 Putative transcription 100.0 1.1E-53 2.4E-58 352.0 16.4 241 1-244 2-249 (273)
3 PF03029 ATP_bind_1: Conserved 100.0 2.1E-47 4.6E-52 329.0 13.8 230 7-245 1-236 (238)
4 KOG1532 GTPase XAB1, interacts 100.0 6.7E-34 1.5E-38 243.1 16.3 238 2-244 19-262 (366)
5 COG1126 GlnQ ABC-type polar am 100.0 2.3E-30 5E-35 215.6 10.8 141 3-152 29-204 (240)
6 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 5.3E-30 1.2E-34 220.3 11.1 154 3-165 31-220 (254)
7 COG1120 FepC ABC-type cobalami 100.0 4.5E-30 9.7E-35 221.6 9.6 161 3-173 29-228 (258)
8 PRK13768 GTPase; Provisional 100.0 3.8E-27 8.2E-32 205.0 23.0 238 1-244 1-245 (253)
9 COG1131 CcmA ABC-type multidru 100.0 1.7E-27 3.7E-32 211.2 15.5 144 3-155 32-208 (293)
10 COG4555 NatA ABC-type Na+ tran 100.0 9.9E-28 2.1E-32 197.8 12.8 154 3-180 29-214 (245)
11 COG1125 OpuBA ABC-type proline 100.0 2.4E-27 5.2E-32 201.7 14.8 142 3-152 28-204 (309)
12 COG1116 TauB ABC-type nitrate/ 99.9 8.7E-28 1.9E-32 204.6 11.9 142 3-152 30-199 (248)
13 COG1127 Ttg2A ABC-type transpo 99.9 1.7E-26 3.8E-31 195.1 14.5 142 3-152 35-214 (263)
14 PRK13537 nodulation ABC transp 99.9 2.3E-26 4.9E-31 205.3 15.9 146 3-157 34-211 (306)
15 COG1135 AbcC ABC-type metal io 99.9 6.5E-27 1.4E-31 203.9 10.7 161 3-172 33-230 (339)
16 COG1136 SalX ABC-type antimicr 99.9 2.3E-26 5.1E-31 195.0 13.6 131 3-137 32-200 (226)
17 TIGR01188 drrA daunorubicin re 99.9 7.1E-26 1.5E-30 201.7 15.7 145 3-156 20-196 (302)
18 PRK13536 nodulation factor exp 99.9 9.2E-26 2E-30 203.9 16.2 146 3-157 68-245 (340)
19 COG3842 PotA ABC-type spermidi 99.9 5.3E-26 1.1E-30 204.2 14.3 153 4-180 33-218 (352)
20 COG1124 DppF ABC-type dipeptid 99.9 3.7E-26 8E-31 193.5 10.7 148 3-158 34-216 (252)
21 COG3839 MalK ABC-type sugar tr 99.9 4.9E-26 1.1E-30 203.4 10.0 129 4-137 31-191 (338)
22 TIGR00960 3a0501s02 Type II (G 99.9 1.3E-25 2.8E-30 190.3 11.8 141 3-152 30-206 (216)
23 COG2884 FtsE Predicted ATPase 99.9 1.9E-25 4.2E-30 182.7 12.1 131 3-136 29-193 (223)
24 TIGR02314 ABC_MetN D-methionin 99.9 9.3E-26 2E-30 204.0 10.8 149 3-160 32-217 (343)
25 COG4152 ABC-type uncharacteriz 99.9 1.7E-25 3.7E-30 189.4 11.2 157 3-168 29-214 (300)
26 PRK11650 ugpC glycerol-3-phosp 99.9 6.9E-25 1.5E-29 199.4 15.9 141 3-152 31-203 (356)
27 COG3638 ABC-type phosphate/pho 99.9 1.8E-25 3.9E-30 188.4 11.0 157 3-168 31-232 (258)
28 TIGR01288 nodI ATP-binding ABC 99.9 8.3E-25 1.8E-29 194.9 15.8 145 3-156 31-207 (303)
29 cd03259 ABC_Carb_Solutes_like 99.9 4.4E-25 9.4E-30 186.7 12.9 141 3-152 27-199 (213)
30 cd03261 ABC_Org_Solvent_Resist 99.9 2.4E-25 5.3E-30 191.1 11.2 141 3-152 27-205 (235)
31 COG3840 ThiQ ABC-type thiamine 99.9 1.6E-25 3.6E-30 182.1 9.5 143 3-154 26-200 (231)
32 cd03266 ABC_NatA_sodium_export 99.9 6.4E-25 1.4E-29 186.2 13.5 141 3-152 32-204 (218)
33 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 2.9E-25 6.3E-30 188.3 11.3 129 3-136 31-197 (218)
34 cd03226 ABC_cobalt_CbiO_domain 99.9 1.2E-24 2.7E-29 183.0 14.6 141 3-152 27-194 (205)
35 cd03265 ABC_DrrA DrrA is the A 99.9 7.5E-25 1.6E-29 186.3 13.3 141 3-152 27-200 (220)
36 TIGR02673 FtsE cell division A 99.9 7.1E-25 1.5E-29 185.4 13.0 141 3-152 29-205 (214)
37 TIGR03265 PhnT2 putative 2-ami 99.9 1.3E-24 2.9E-29 197.4 15.6 141 3-152 31-203 (353)
38 cd03269 ABC_putative_ATPase Th 99.9 9.2E-25 2E-29 184.3 13.6 141 3-152 27-196 (210)
39 cd03219 ABC_Mj1267_LivG_branch 99.9 2E-24 4.3E-29 185.3 15.8 141 3-152 27-211 (236)
40 COG1122 CbiO ABC-type cobalt t 99.9 1.1E-25 2.3E-30 193.3 7.8 140 4-152 32-207 (235)
41 TIGR03522 GldA_ABC_ATP gliding 99.9 1.5E-24 3.3E-29 193.0 15.4 144 3-156 29-204 (301)
42 COG4559 ABC-type hemin transpo 99.9 5.8E-25 1.3E-29 182.7 11.7 174 3-189 28-239 (259)
43 COG0411 LivG ABC-type branched 99.9 1.2E-25 2.7E-30 190.4 7.8 141 3-152 31-218 (250)
44 cd03218 ABC_YhbG The ABC trans 99.9 2.1E-24 4.5E-29 184.8 15.4 141 3-152 27-201 (232)
45 cd03268 ABC_BcrA_bacitracin_re 99.9 1.4E-24 3E-29 183.0 13.7 141 3-152 27-194 (208)
46 PRK09536 btuD corrinoid ABC tr 99.9 2.1E-24 4.5E-29 198.7 15.9 148 3-159 30-214 (402)
47 TIGR03258 PhnT 2-aminoethylpho 99.9 2E-24 4.4E-29 196.6 15.3 141 3-152 32-207 (362)
48 cd03293 ABC_NrtD_SsuB_transpor 99.9 9.9E-25 2.1E-29 185.5 12.4 141 3-152 31-200 (220)
49 TIGR01186 proV glycine betaine 99.9 3.2E-24 7E-29 195.2 16.5 144 3-155 20-201 (363)
50 cd03292 ABC_FtsE_transporter F 99.9 1.2E-24 2.7E-29 183.9 12.8 141 3-152 28-204 (214)
51 PRK11000 maltose/maltodextrin 99.9 3.2E-24 6.8E-29 196.0 16.2 141 3-152 30-202 (369)
52 cd03296 ABC_CysA_sulfate_impor 99.9 3.7E-24 8.1E-29 184.2 15.7 141 3-152 29-205 (239)
53 PRK11432 fbpC ferric transport 99.9 2.8E-24 6.1E-29 195.0 15.4 141 3-152 33-205 (351)
54 cd03225 ABC_cobalt_CbiO_domain 99.9 1.3E-24 2.8E-29 183.5 12.3 141 3-152 28-202 (211)
55 PRK11153 metN DL-methionine tr 99.9 3.1E-24 6.7E-29 194.4 15.6 145 3-156 32-213 (343)
56 TIGR01184 ntrCD nitrate transp 99.9 1.3E-24 2.8E-29 186.3 12.3 143 3-154 12-185 (230)
57 COG4604 CeuD ABC-type enteroch 99.9 5.8E-25 1.3E-29 181.0 9.6 137 3-145 28-200 (252)
58 cd03258 ABC_MetN_methionine_tr 99.9 4E-24 8.6E-29 183.2 15.0 141 3-152 32-209 (233)
59 cd03262 ABC_HisP_GlnQ_permease 99.9 4E-24 8.7E-29 180.6 14.8 141 3-152 27-203 (213)
60 PRK10851 sulfate/thiosulfate t 99.9 5.5E-24 1.2E-28 193.3 16.2 141 3-152 29-205 (353)
61 cd03301 ABC_MalK_N The N-termi 99.9 1.8E-24 4E-29 182.8 12.1 141 3-152 27-199 (213)
62 cd03231 ABC_CcmA_heme_exporter 99.9 4.1E-24 8.9E-29 179.6 14.0 129 3-136 27-181 (201)
63 cd03295 ABC_OpuCA_Osmoprotecti 99.9 7.9E-24 1.7E-28 182.5 16.0 141 3-152 28-204 (242)
64 TIGR01166 cbiO cobalt transpor 99.9 3.7E-24 8.1E-29 178.1 13.4 129 3-136 19-183 (190)
65 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 3.3E-24 7.3E-29 183.1 13.3 141 3-152 49-210 (224)
66 COG1118 CysA ABC-type sulfate/ 99.9 1E-24 2.2E-29 190.0 9.9 144 4-156 30-210 (345)
67 TIGR02315 ABC_phnC phosphonate 99.9 5.4E-24 1.2E-28 183.4 14.5 141 3-152 29-214 (243)
68 PRK11248 tauB taurine transpor 99.9 3.7E-24 8.1E-29 186.3 13.4 141 3-152 28-197 (255)
69 cd03224 ABC_TM1139_LivF_branch 99.9 7.2E-24 1.6E-28 180.1 14.9 141 3-152 27-200 (222)
70 cd03298 ABC_ThiQ_thiamine_tran 99.9 3.4E-24 7.3E-29 181.0 12.6 141 3-152 25-197 (211)
71 PRK09452 potA putrescine/sperm 99.9 6.4E-24 1.4E-28 194.1 15.4 141 3-152 41-213 (375)
72 cd03297 ABC_ModC_molybdenum_tr 99.9 6.4E-24 1.4E-28 179.8 14.4 141 3-152 24-200 (214)
73 cd03264 ABC_drug_resistance_li 99.9 3.5E-24 7.5E-29 181.0 12.6 139 4-152 27-197 (211)
74 cd03235 ABC_Metallic_Cations A 99.9 2.3E-24 5.1E-29 182.3 11.2 141 3-152 26-200 (213)
75 cd03256 ABC_PhnC_transporter A 99.9 9.1E-24 2E-28 181.7 15.0 141 3-152 28-213 (241)
76 PRK10908 cell division protein 99.9 4.9E-24 1.1E-28 181.5 13.2 141 3-152 29-205 (222)
77 PRK13647 cbiO cobalt transport 99.9 1.8E-24 3.8E-29 190.2 10.6 141 3-152 32-206 (274)
78 PRK13637 cbiO cobalt transport 99.9 7E-24 1.5E-28 187.6 14.5 141 3-152 34-213 (287)
79 cd03263 ABC_subfamily_A The AB 99.9 2.9E-24 6.2E-29 182.5 11.4 140 3-152 29-200 (220)
80 PRK09493 glnQ glutamine ABC tr 99.9 9.9E-24 2.2E-28 181.6 14.9 141 3-152 28-204 (240)
81 cd03294 ABC_Pro_Gly_Bertaine T 99.9 8.1E-24 1.8E-28 185.5 14.6 141 3-152 51-229 (269)
82 PRK11247 ssuB aliphatic sulfon 99.9 2.5E-24 5.5E-29 187.6 11.0 141 3-152 39-202 (257)
83 PRK13651 cobalt transporter AT 99.9 1.3E-24 2.7E-29 193.9 9.2 141 3-152 34-233 (305)
84 PRK10895 lipopolysaccharide AB 99.9 1.4E-23 2.9E-28 180.9 15.3 141 3-152 30-205 (241)
85 PRK13538 cytochrome c biogenes 99.9 1.1E-23 2.3E-28 177.3 14.3 129 3-136 28-185 (204)
86 PRK13641 cbiO cobalt transport 99.9 8.1E-24 1.8E-28 187.1 14.2 143 3-154 34-215 (287)
87 PRK11264 putative amino-acid A 99.9 1.7E-23 3.6E-28 181.2 15.8 141 3-152 30-212 (250)
88 PRK10070 glycine betaine trans 99.9 1.5E-23 3.3E-28 192.9 16.2 143 3-154 55-235 (400)
89 PRK11831 putative ABC transpor 99.9 1.5E-23 3.3E-28 183.7 15.5 141 3-152 34-212 (269)
90 PRK11300 livG leucine/isoleuci 99.9 1.3E-23 2.9E-28 182.2 15.0 141 3-152 32-222 (255)
91 TIGR02142 modC_ABC molybdenum 99.9 1.1E-23 2.5E-28 191.4 15.2 143 3-154 24-202 (354)
92 TIGR03740 galliderm_ABC gallid 99.9 5.3E-24 1.1E-28 181.4 12.2 141 3-152 27-192 (223)
93 PRK13543 cytochrome c biogenes 99.9 1.3E-23 2.8E-28 178.2 14.4 141 3-152 38-205 (214)
94 PRK11629 lolD lipoprotein tran 99.9 1.4E-23 2.9E-28 180.1 14.6 129 3-136 36-202 (233)
95 PRK13643 cbiO cobalt transport 99.9 1.3E-24 2.8E-29 192.4 8.4 141 3-152 33-212 (288)
96 TIGR01189 ccmA heme ABC export 99.9 1.9E-23 4.1E-28 175.0 15.0 129 3-136 27-183 (198)
97 TIGR02211 LolD_lipo_ex lipopro 99.9 9.5E-24 2.1E-28 179.4 13.3 129 3-136 32-198 (221)
98 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 2.1E-23 4.6E-28 179.2 15.6 129 3-136 28-189 (236)
99 PRK11144 modC molybdate transp 99.9 1.3E-23 2.9E-28 190.8 15.0 141 3-152 25-197 (352)
100 PRK11607 potG putrescine trans 99.9 2.1E-23 4.5E-28 190.9 16.0 142 3-153 46-219 (377)
101 PRK13540 cytochrome c biogenes 99.9 2.5E-23 5.5E-28 174.5 15.1 129 3-136 28-183 (200)
102 TIGR03608 L_ocin_972_ABC putat 99.9 1.7E-23 3.8E-28 175.8 14.1 129 3-136 25-190 (206)
103 TIGR03411 urea_trans_UrtD urea 99.9 3.1E-23 6.7E-28 178.7 15.8 140 3-152 29-210 (242)
104 TIGR01277 thiQ thiamine ABC tr 99.9 9.6E-24 2.1E-28 178.7 12.1 141 3-152 25-197 (213)
105 PRK13639 cbiO cobalt transport 99.9 1.9E-23 4.1E-28 183.7 14.4 141 3-152 29-205 (275)
106 TIGR03415 ABC_choXWV_ATP choli 99.9 4E-23 8.7E-28 189.0 17.0 146 3-157 51-238 (382)
107 cd03237 ABC_RNaseL_inhibitor_d 99.9 9.7E-24 2.1E-28 182.9 12.2 141 3-152 26-184 (246)
108 TIGR03410 urea_trans_UrtE urea 99.9 2.5E-23 5.3E-28 178.0 14.5 141 3-152 27-200 (230)
109 PRK13638 cbiO cobalt transport 99.9 2.6E-24 5.7E-29 188.7 8.7 141 3-152 28-204 (271)
110 PRK11614 livF leucine/isoleuci 99.9 1.9E-23 4.1E-28 179.6 13.8 141 3-152 32-205 (237)
111 COG3845 ABC-type uncharacteriz 99.9 1.2E-23 2.6E-28 192.8 13.0 145 3-154 31-210 (501)
112 PRK13649 cbiO cobalt transport 99.9 2.3E-23 4.9E-28 183.5 14.2 141 3-152 34-213 (280)
113 PRK11124 artP arginine transpo 99.9 8.4E-24 1.8E-28 182.3 11.3 141 3-152 29-209 (242)
114 COG1137 YhbG ABC-type (unclass 99.9 1E-24 2.2E-29 179.8 5.2 142 3-153 31-208 (243)
115 TIGR01187 potA spermidine/putr 99.9 2.1E-23 4.5E-28 187.7 14.1 138 7-153 1-170 (325)
116 PRK13646 cbiO cobalt transport 99.9 3.2E-24 7E-29 189.6 8.8 141 3-152 34-214 (286)
117 PRK15079 oligopeptide ABC tran 99.9 2.7E-23 5.9E-28 187.2 14.9 142 3-152 48-230 (331)
118 PRK13636 cbiO cobalt transport 99.9 1.9E-23 4.2E-28 184.4 13.6 141 3-152 33-210 (283)
119 PRK13548 hmuV hemin importer A 99.9 3.7E-23 8E-28 180.2 15.1 141 3-152 29-209 (258)
120 PRK10584 putative ABC transpor 99.9 3.4E-23 7.4E-28 176.9 14.6 129 3-136 37-203 (228)
121 PRK13634 cbiO cobalt transport 99.9 2.3E-23 5.1E-28 184.5 14.0 143 3-154 34-216 (290)
122 PRK13541 cytochrome c biogenes 99.9 4.4E-23 9.6E-28 172.4 14.9 129 3-136 27-179 (195)
123 PRK10771 thiQ thiamine transpo 99.9 2.9E-23 6.3E-28 177.9 14.1 141 3-152 26-198 (232)
124 PRK13652 cbiO cobalt transport 99.9 3.6E-23 7.8E-28 182.1 14.8 141 3-152 31-206 (277)
125 TIGR02770 nickel_nikD nickel i 99.9 4.9E-23 1.1E-27 176.4 15.1 141 3-152 13-194 (230)
126 cd03267 ABC_NatA_like Similar 99.9 2.3E-23 5.1E-28 179.2 13.1 141 3-152 48-222 (236)
127 PRK13650 cbiO cobalt transport 99.9 5.2E-24 1.1E-28 187.7 9.2 129 3-136 34-197 (279)
128 PRK15439 autoinducer 2 ABC tra 99.9 4.3E-23 9.2E-28 195.9 16.0 143 3-154 38-210 (510)
129 PRK15112 antimicrobial peptide 99.9 5.3E-23 1.1E-27 180.1 15.4 142 3-152 40-218 (267)
130 PRK13539 cytochrome c biogenes 99.9 5.5E-23 1.2E-27 173.5 14.7 129 3-136 29-183 (207)
131 PRK13644 cbiO cobalt transport 99.9 3.5E-23 7.6E-28 182.0 14.0 129 3-136 29-192 (274)
132 PRK13631 cbiO cobalt transport 99.9 4.8E-24 1.1E-28 191.3 8.7 141 3-152 53-244 (320)
133 cd03257 ABC_NikE_OppD_transpor 99.9 2.7E-23 6E-28 177.1 12.9 141 3-152 32-214 (228)
134 TIGR02769 nickel_nikE nickel i 99.9 7E-23 1.5E-27 179.1 15.6 141 3-152 38-219 (265)
135 PRK10619 histidine/lysine/argi 99.9 4.2E-23 9.2E-28 179.6 14.1 141 3-152 32-220 (257)
136 TIGR03771 anch_rpt_ABC anchore 99.9 3E-23 6.4E-28 177.1 12.7 141 3-152 7-181 (223)
137 cd03260 ABC_PstB_phosphate_tra 99.9 8.4E-24 1.8E-28 180.5 9.1 142 3-152 27-208 (227)
138 PRK13635 cbiO cobalt transport 99.9 4.6E-23 1E-27 181.7 14.0 129 3-136 34-197 (279)
139 COG4598 HisP ABC-type histidin 99.9 1E-23 2.2E-28 171.6 9.0 129 4-137 34-209 (256)
140 PRK10575 iron-hydroxamate tran 99.9 4.8E-23 1E-27 180.1 14.0 141 3-152 38-216 (265)
141 PRK10762 D-ribose transporter 99.9 3.3E-23 7.1E-28 196.2 13.9 143 3-154 31-211 (501)
142 TIGR03005 ectoine_ehuA ectoine 99.9 8.4E-23 1.8E-27 177.1 14.8 141 3-152 27-215 (252)
143 PRK11308 dppF dipeptide transp 99.9 6.5E-23 1.4E-27 184.5 14.5 142 3-152 42-223 (327)
144 TIGR01978 sufC FeS assembly AT 99.9 2.3E-23 5.1E-28 179.3 11.0 130 3-136 27-200 (243)
145 COG0410 LivF ABC-type branched 99.9 1E-23 2.3E-28 177.4 8.2 132 3-137 30-194 (237)
146 cd03215 ABC_Carb_Monos_II This 99.9 4.2E-23 9.1E-28 170.8 11.7 125 3-152 27-172 (182)
147 TIGR03873 F420-0_ABC_ATP propo 99.9 1.1E-22 2.3E-27 177.0 14.8 141 3-152 28-205 (256)
148 PRK14250 phosphate ABC transpo 99.9 8.3E-23 1.8E-27 176.2 14.0 141 3-152 30-200 (241)
149 PRK13546 teichoic acids export 99.9 2.7E-22 5.8E-27 175.6 17.2 141 3-152 51-211 (264)
150 PRK13645 cbiO cobalt transport 99.9 7E-23 1.5E-27 181.3 13.6 142 3-153 38-220 (289)
151 cd03230 ABC_DR_subfamily_A Thi 99.9 7E-23 1.5E-27 168.2 12.6 109 3-136 27-151 (173)
152 COG1129 MglA ABC-type sugar tr 99.9 1E-22 2.3E-27 189.3 15.0 146 3-157 35-218 (500)
153 COG1117 PstB ABC-type phosphat 99.9 6.7E-23 1.5E-27 170.6 12.2 140 3-150 34-214 (253)
154 cd03300 ABC_PotA_N PotA is an 99.9 2.5E-22 5.3E-27 172.3 16.2 141 3-152 27-199 (232)
155 PRK11231 fecE iron-dicitrate t 99.9 5.1E-23 1.1E-27 178.9 11.9 141 3-152 29-206 (255)
156 COG4586 ABC-type uncharacteriz 99.9 3.4E-23 7.3E-28 177.9 10.4 156 3-167 51-240 (325)
157 PRK10253 iron-enterobactin tra 99.9 1.2E-22 2.6E-27 177.7 14.1 141 3-152 34-212 (265)
158 PRK13648 cbiO cobalt transport 99.9 1.5E-22 3.3E-27 177.3 14.7 129 3-136 36-199 (269)
159 PRK13549 xylose transporter AT 99.9 4.8E-23 1.1E-27 195.3 12.4 142 3-153 32-212 (506)
160 PRK09700 D-allose transporter 99.9 3.9E-23 8.5E-28 196.1 11.8 129 3-136 32-201 (510)
161 PRK10938 putative molybdenum t 99.9 1E-22 2.2E-27 192.3 14.4 144 3-155 30-206 (490)
162 cd03234 ABCG_White The White s 99.9 2E-22 4.4E-27 172.0 14.7 129 3-136 34-199 (226)
163 TIGR02982 heterocyst_DevA ABC 99.9 2.2E-22 4.8E-27 171.1 14.9 129 3-136 32-198 (220)
164 TIGR00968 3a0106s01 sulfate AB 99.9 2.5E-22 5.4E-27 172.8 15.2 141 3-152 27-199 (237)
165 PRK13632 cbiO cobalt transport 99.9 1.3E-22 2.7E-27 178.1 13.5 129 3-136 36-199 (271)
166 cd03214 ABC_Iron-Siderophores_ 99.9 4.3E-23 9.3E-28 170.5 9.8 136 3-152 26-166 (180)
167 PRK09700 D-allose transporter 99.9 8.4E-23 1.8E-27 193.8 12.9 141 3-152 290-477 (510)
168 PRK10418 nikD nickel transport 99.9 3.4E-22 7.4E-27 173.7 15.6 143 3-152 30-209 (254)
169 PRK10982 galactose/methyl gala 99.9 2.4E-22 5.2E-27 189.9 15.9 143 3-154 25-204 (491)
170 TIGR02324 CP_lyasePhnL phospho 99.9 1.7E-22 3.6E-27 172.2 13.3 130 3-136 35-205 (224)
171 COG4175 ProV ABC-type proline/ 99.9 3.6E-23 7.7E-28 180.9 9.3 159 3-169 55-251 (386)
172 cd03229 ABC_Class3 This class 99.9 4.9E-23 1.1E-27 169.9 9.7 117 3-136 27-157 (178)
173 cd03299 ABC_ModC_like Archeal 99.9 1.2E-22 2.5E-27 174.7 12.5 141 3-152 26-198 (235)
174 TIGR00972 3a0107s01c2 phosphat 99.9 3E-22 6.5E-27 173.2 14.8 140 3-152 28-211 (247)
175 PRK09984 phosphonate/organopho 99.9 3.1E-22 6.6E-27 174.6 15.0 141 3-152 31-221 (262)
176 PRK09544 znuC high-affinity zi 99.9 7.9E-23 1.7E-27 177.6 10.7 141 3-152 31-189 (251)
177 PRK14247 phosphate ABC transpo 99.9 7.6E-23 1.6E-27 177.1 10.5 142 3-152 30-213 (250)
178 PRK11288 araG L-arabinose tran 99.9 2E-22 4.2E-27 191.0 13.9 129 3-136 31-196 (501)
179 PRK14242 phosphate transporter 99.9 2.6E-22 5.7E-27 174.0 13.5 142 3-152 33-216 (253)
180 PRK11701 phnK phosphonate C-P 99.9 4.2E-22 9.1E-27 173.4 14.6 141 3-152 33-220 (258)
181 PRK15056 manganese/iron transp 99.9 6E-23 1.3E-27 180.2 9.3 141 3-152 34-210 (272)
182 PRK11022 dppD dipeptide transp 99.9 4.9E-22 1.1E-26 178.8 15.3 143 3-152 34-222 (326)
183 PRK13633 cobalt transporter AT 99.9 4.5E-23 9.7E-28 181.8 8.4 129 3-136 37-201 (280)
184 PRK11288 araG L-arabinose tran 99.9 2E-22 4.3E-27 190.9 13.3 141 3-152 280-464 (501)
185 COG1123 ATPase components of v 99.9 6.9E-23 1.5E-27 191.8 10.0 156 3-181 318-512 (539)
186 PRK15439 autoinducer 2 ABC tra 99.9 1.6E-22 3.6E-27 191.9 12.8 141 3-152 290-471 (510)
187 PRK13640 cbiO cobalt transport 99.9 3.7E-22 8.1E-27 176.1 14.0 129 3-136 34-200 (282)
188 PRK13547 hmuV hemin importer A 99.9 4.8E-22 1E-26 174.7 14.6 141 3-152 28-223 (272)
189 TIGR02323 CP_lyasePhnK phospho 99.9 6.9E-22 1.5E-26 171.4 15.4 141 3-152 30-217 (253)
190 COG4148 ModC ABC-type molybdat 99.9 2.3E-23 5E-28 179.4 6.0 167 3-178 25-223 (352)
191 PRK14268 phosphate ABC transpo 99.9 7.1E-22 1.5E-26 172.1 15.4 142 3-152 39-221 (258)
192 PRK09473 oppD oligopeptide tra 99.9 4.9E-22 1.1E-26 179.1 14.8 142 3-152 43-230 (330)
193 cd03213 ABCG_EPDR ABCG transpo 99.9 3.8E-22 8.2E-27 166.9 13.0 116 3-136 36-167 (194)
194 PRK10762 D-ribose transporter 99.9 2.5E-22 5.5E-27 190.2 13.3 141 3-152 279-463 (501)
195 PRK15093 antimicrobial peptide 99.9 6.2E-22 1.4E-26 178.4 15.1 142 3-152 34-227 (330)
196 PRK13642 cbiO cobalt transport 99.9 4.8E-22 1E-26 175.0 13.9 129 3-136 34-197 (277)
197 PRK14273 phosphate ABC transpo 99.9 4.3E-22 9.4E-27 172.9 13.3 142 3-152 34-217 (254)
198 cd03246 ABCC_Protease_Secretio 99.9 5.6E-22 1.2E-26 162.8 13.2 108 3-136 29-152 (173)
199 PRK13545 tagH teichoic acids e 99.9 2E-22 4.3E-27 189.3 11.9 145 3-156 51-215 (549)
200 PRK10247 putative ABC transpor 99.9 6.1E-22 1.3E-26 169.1 13.9 129 3-136 34-194 (225)
201 PRK13549 xylose transporter AT 99.9 2.6E-22 5.6E-27 190.4 12.7 141 3-152 289-473 (506)
202 PRK14267 phosphate ABC transpo 99.9 1.1E-21 2.3E-26 170.3 15.4 142 3-152 31-216 (253)
203 cd03251 ABCC_MsbA MsbA is an e 99.9 6.2E-22 1.3E-26 169.6 13.6 128 3-136 29-193 (234)
204 PRK10261 glutathione transport 99.9 5.2E-22 1.1E-26 192.6 14.8 141 3-152 351-532 (623)
205 PRK03695 vitamin B12-transport 99.9 9.3E-22 2E-26 170.5 14.6 142 3-152 23-201 (248)
206 cd03233 ABC_PDR_domain1 The pl 99.9 4.6E-22 1E-26 167.3 12.2 122 3-136 34-175 (202)
207 PRK14241 phosphate transporter 99.9 5.2E-22 1.1E-26 172.8 12.9 142 3-152 31-215 (258)
208 cd03245 ABCC_bacteriocin_expor 99.9 1.9E-22 4E-27 171.3 9.8 130 3-136 31-195 (220)
209 PRK10419 nikE nickel transport 99.9 2.7E-22 5.9E-27 175.8 10.9 141 3-152 39-220 (268)
210 PRK10744 pstB phosphate transp 99.9 8.7E-22 1.9E-26 171.7 13.9 142 3-152 40-223 (260)
211 TIGR02633 xylG D-xylose ABC tr 99.9 3.8E-22 8.3E-27 188.8 12.6 142 3-153 287-472 (500)
212 cd03252 ABCC_Hemolysin The ABC 99.9 1.4E-22 3.1E-27 174.0 8.6 130 3-136 29-193 (237)
213 cd03254 ABCC_Glucan_exporter_l 99.9 8.7E-22 1.9E-26 168.2 13.1 130 3-136 30-194 (229)
214 COG4525 TauB ABC-type taurine 99.9 6.3E-22 1.4E-26 163.0 11.6 129 4-136 33-189 (259)
215 cd03216 ABC_Carb_Monos_I This 99.9 5.1E-22 1.1E-26 161.7 10.8 121 3-152 27-150 (163)
216 TIGR02633 xylG D-xylose ABC tr 99.9 1.7E-21 3.6E-26 184.5 15.9 145 3-155 28-212 (500)
217 COG4181 Predicted ABC-type tra 99.9 1.1E-21 2.4E-26 158.4 12.4 129 4-137 38-204 (228)
218 cd03232 ABC_PDR_domain2 The pl 99.9 9.6E-22 2.1E-26 164.1 12.5 116 3-136 34-164 (192)
219 PRK14269 phosphate ABC transpo 99.9 1.6E-21 3.5E-26 168.6 14.3 142 3-152 29-209 (246)
220 CHL00131 ycf16 sulfate ABC tra 99.9 4.6E-22 1E-26 172.3 11.0 130 3-136 34-207 (252)
221 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 1.1E-21 2.3E-26 168.6 13.1 128 3-136 30-194 (238)
222 cd03222 ABC_RNaseL_inhibitor T 99.9 4.3E-22 9.4E-27 164.4 10.1 110 3-152 26-140 (177)
223 PRK14235 phosphate transporter 99.9 1.2E-21 2.7E-26 171.4 13.6 142 3-152 46-230 (267)
224 PRK14245 phosphate ABC transpo 99.9 1.7E-21 3.7E-26 168.7 14.1 142 3-152 30-213 (250)
225 TIGR03269 met_CoM_red_A2 methy 99.9 3.4E-22 7.4E-27 190.1 10.6 143 3-152 311-496 (520)
226 cd03236 ABC_RNaseL_inhibitor_d 99.9 8.9E-22 1.9E-26 171.4 12.3 140 4-152 28-207 (255)
227 cd03253 ABCC_ATM1_transporter 99.9 1.8E-21 3.9E-26 166.9 13.6 130 3-136 28-192 (236)
228 PRK14256 phosphate ABC transpo 99.9 6.9E-22 1.5E-26 171.4 11.1 142 3-152 31-215 (252)
229 PRK15134 microcin C ABC transp 99.9 6.9E-22 1.5E-26 188.4 12.0 131 3-136 36-213 (529)
230 PRK15177 Vi polysaccharide exp 99.9 3E-21 6.6E-26 163.7 14.7 139 3-152 14-171 (213)
231 TIGR01257 rim_protein retinal- 99.9 2.9E-22 6.3E-27 211.2 10.2 147 3-158 1966-2144(2272)
232 PRK10261 glutathione transport 99.9 1.6E-21 3.5E-26 189.2 14.5 149 3-158 43-243 (623)
233 COG1134 TagH ABC-type polysacc 99.9 6.1E-22 1.3E-26 168.1 9.9 144 4-154 55-217 (249)
234 cd03228 ABCC_MRP_Like The MRP 99.9 7.5E-22 1.6E-26 161.8 10.1 112 3-136 29-151 (171)
235 cd03248 ABCC_TAP TAP, the Tran 99.9 8.8E-22 1.9E-26 167.9 10.9 128 3-136 41-205 (226)
236 COG1119 ModF ABC-type molybden 99.9 1.7E-21 3.6E-26 165.4 12.2 139 5-152 60-241 (257)
237 PRK15134 microcin C ABC transp 99.9 1.6E-21 3.4E-26 185.9 13.5 140 3-152 313-494 (529)
238 PRK14270 phosphate ABC transpo 99.9 4.6E-21 9.9E-26 166.2 15.1 142 3-152 31-214 (251)
239 PRK14263 phosphate ABC transpo 99.9 4.4E-21 9.5E-26 167.5 15.0 142 3-152 35-216 (261)
240 PRK14259 phosphate ABC transpo 99.9 1.5E-21 3.3E-26 171.1 12.1 142 3-152 40-221 (269)
241 PRK14248 phosphate ABC transpo 99.9 3.5E-21 7.6E-26 168.5 14.4 142 3-152 48-231 (268)
242 PRK14237 phosphate transporter 99.9 2.9E-21 6.3E-26 169.1 13.9 142 3-152 47-230 (267)
243 PRK14274 phosphate ABC transpo 99.9 4E-21 8.7E-26 167.3 14.7 142 3-152 39-222 (259)
244 TIGR03269 met_CoM_red_A2 methy 99.9 2.2E-21 4.7E-26 184.6 13.9 129 3-136 27-225 (520)
245 PRK14251 phosphate ABC transpo 99.9 1.7E-21 3.8E-26 168.7 12.1 142 3-152 31-214 (251)
246 PRK14244 phosphate ABC transpo 99.9 5.1E-21 1.1E-25 165.9 15.0 142 3-152 32-216 (251)
247 PRK14239 phosphate transporter 99.9 4.5E-21 9.7E-26 166.1 14.5 142 3-152 32-215 (252)
248 PRK10982 galactose/methyl gala 99.9 1.7E-21 3.8E-26 184.0 12.5 141 3-152 275-459 (491)
249 PRK14262 phosphate ABC transpo 99.9 3.1E-21 6.8E-26 167.0 13.0 142 3-152 30-213 (250)
250 PRK13409 putative ATPase RIL; 99.9 1.6E-21 3.5E-26 187.7 12.0 141 3-153 366-523 (590)
251 PRK13409 putative ATPase RIL; 99.9 9.4E-22 2E-26 189.3 10.3 128 3-136 100-267 (590)
252 cd03217 ABC_FeS_Assembly ABC-t 99.9 1.7E-21 3.7E-26 163.6 10.5 129 3-149 27-169 (200)
253 PRK14238 phosphate transporter 99.9 3.7E-21 8E-26 168.8 13.1 142 3-152 51-234 (271)
254 PRK09580 sufC cysteine desulfu 99.9 2.8E-21 6.2E-26 166.9 12.0 130 3-136 28-201 (248)
255 COG1101 PhnK ABC-type uncharac 99.9 1.8E-21 3.8E-26 162.4 10.0 157 4-165 34-230 (263)
256 PRK14258 phosphate ABC transpo 99.9 8.2E-21 1.8E-25 165.7 14.8 143 3-152 34-219 (261)
257 cd03250 ABCC_MRP_domain1 Domai 99.9 2.7E-21 5.9E-26 162.5 11.3 131 3-136 32-184 (204)
258 PRK14272 phosphate ABC transpo 99.9 1E-20 2.2E-25 163.9 15.2 142 3-152 31-215 (252)
259 cd03290 ABCC_SUR1_N The SUR do 99.9 3.3E-21 7.2E-26 163.6 11.8 132 3-136 28-198 (218)
260 PRK14249 phosphate ABC transpo 99.9 9E-21 2E-25 164.3 14.7 142 3-152 31-214 (251)
261 PRK14240 phosphate transporter 99.9 3.7E-21 8.1E-26 166.5 12.2 142 3-152 30-213 (250)
262 TIGR01257 rim_protein retinal- 99.9 5E-21 1.1E-25 202.0 15.4 144 3-156 957-1132(2272)
263 COG4133 CcmA ABC-type transpor 99.9 9.8E-21 2.1E-25 154.8 13.6 125 4-133 30-183 (209)
264 cd03247 ABCC_cytochrome_bd The 99.9 2.4E-21 5.3E-26 159.7 10.1 110 3-136 29-153 (178)
265 PRK14236 phosphate transporter 99.9 1.2E-20 2.6E-25 165.6 15.1 142 3-152 52-235 (272)
266 PRK14254 phosphate ABC transpo 99.9 7.8E-21 1.7E-25 168.0 13.5 142 3-152 66-247 (285)
267 PRK14275 phosphate ABC transpo 99.9 2.5E-21 5.4E-26 171.2 10.3 142 3-152 66-249 (286)
268 PRK14253 phosphate ABC transpo 99.9 3.7E-21 8.1E-26 166.4 11.1 142 3-152 30-212 (249)
269 PRK14246 phosphate ABC transpo 99.9 2.1E-20 4.7E-25 162.8 16.0 142 3-152 37-220 (257)
270 cd03369 ABCC_NFT1 Domain 2 of 99.8 3.2E-21 7E-26 162.5 10.1 124 3-136 35-180 (207)
271 PRK14260 phosphate ABC transpo 99.8 7.3E-21 1.6E-25 165.7 12.6 142 3-152 34-217 (259)
272 PLN03211 ABC transporter G-25; 99.8 4.2E-21 9E-26 187.0 12.0 131 3-136 95-262 (659)
273 PRK14271 phosphate ABC transpo 99.8 2.1E-20 4.4E-25 164.6 15.1 142 3-152 48-230 (276)
274 COG4608 AppF ABC-type oligopep 99.8 2.9E-21 6.4E-26 166.6 9.2 122 3-136 40-166 (268)
275 cd03244 ABCC_MRP_domain2 Domai 99.8 4.7E-21 1E-25 162.8 10.4 130 3-136 31-194 (221)
276 PRK14243 phosphate transporter 99.8 4.8E-21 1.1E-25 167.4 10.7 142 3-152 37-218 (264)
277 PRK14261 phosphate ABC transpo 99.8 3.2E-20 6.9E-25 161.0 15.7 142 3-152 33-216 (253)
278 COG2274 SunT ABC-type bacterio 99.8 5.4E-21 1.2E-25 186.3 11.3 129 4-136 501-664 (709)
279 PRK15064 ABC transporter ATP-b 99.8 8.8E-21 1.9E-25 180.8 12.4 139 3-152 28-220 (530)
280 cd03223 ABCD_peroxisomal_ALDP 99.8 1.1E-20 2.5E-25 154.2 11.3 108 3-136 28-144 (166)
281 cd03289 ABCC_CFTR2 The CFTR su 99.8 2.6E-20 5.6E-25 163.9 14.2 129 3-136 31-193 (275)
282 PRK14266 phosphate ABC transpo 99.8 2.9E-20 6.2E-25 161.0 14.1 142 3-152 30-213 (250)
283 PRK14255 phosphate ABC transpo 99.8 1.4E-20 3E-25 163.1 11.6 142 3-152 32-215 (252)
284 PRK14265 phosphate ABC transpo 99.8 1.7E-20 3.8E-25 164.8 12.3 142 3-152 47-228 (274)
285 COG0444 DppD ABC-type dipeptid 99.8 3.1E-20 6.7E-25 163.5 13.7 163 3-189 32-243 (316)
286 COG0488 Uup ATPase components 99.8 5.2E-20 1.1E-24 174.3 15.6 137 3-149 30-218 (530)
287 PRK11176 lipid transporter ATP 99.8 1.6E-20 3.5E-25 180.7 11.9 129 4-136 371-535 (582)
288 PRK11160 cysteine/glutathione 99.8 4.7E-20 1E-24 177.4 15.1 130 3-136 367-530 (574)
289 COG1123 ATPase components of v 99.8 4.4E-20 9.6E-25 173.0 14.3 163 3-189 36-244 (539)
290 COG4674 Uncharacterized ABC-ty 99.8 1.6E-20 3.4E-25 154.6 9.8 160 4-187 33-233 (249)
291 cd03288 ABCC_SUR2 The SUR doma 99.8 5.9E-20 1.3E-24 159.9 14.1 128 3-136 48-211 (257)
292 PRK14257 phosphate ABC transpo 99.8 6.2E-20 1.3E-24 165.3 14.6 142 3-152 109-292 (329)
293 PRK14252 phosphate ABC transpo 99.8 5.2E-20 1.1E-24 160.9 13.7 142 3-152 43-228 (265)
294 PRK15064 ABC transporter ATP-b 99.8 2.9E-20 6.3E-25 177.3 13.1 138 3-152 346-503 (530)
295 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.8 1.6E-20 3.4E-25 150.0 9.2 106 3-152 27-135 (144)
296 TIGR02868 CydC thiol reductant 99.8 2E-20 4.3E-25 178.2 11.5 130 3-136 362-525 (529)
297 TIGR01842 type_I_sec_PrtD type 99.8 1.6E-20 3.4E-25 179.6 10.7 128 4-136 346-510 (544)
298 PRK14264 phosphate ABC transpo 99.8 5.9E-20 1.3E-24 163.9 13.5 142 3-152 72-267 (305)
299 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 7.7E-21 1.7E-25 186.3 8.6 128 3-136 480-641 (686)
300 PRK10938 putative molybdenum t 99.8 5.7E-20 1.2E-24 173.7 13.7 129 3-136 287-458 (490)
301 COG4172 ABC-type uncharacteriz 99.8 1.4E-20 3E-25 169.3 9.0 161 4-189 315-516 (534)
302 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 5.5E-20 1.2E-24 176.2 13.8 137 3-152 349-508 (552)
303 cd03291 ABCC_CFTR1 The CFTR su 99.8 1.5E-19 3.3E-24 159.6 15.5 130 3-136 64-215 (282)
304 PRK11819 putative ABC transpor 99.8 7.4E-20 1.6E-24 175.5 14.5 137 3-152 34-228 (556)
305 PRK11819 putative ABC transpor 99.8 5.9E-20 1.3E-24 176.1 13.7 137 3-152 351-510 (556)
306 COG4161 ArtP ABC-type arginine 99.8 2.6E-19 5.6E-24 143.7 15.1 128 4-136 30-197 (242)
307 PRK10790 putative multidrug tr 99.8 3.5E-20 7.7E-25 178.7 11.6 130 3-136 368-531 (592)
308 cd00267 ABC_ATPase ABC (ATP-bi 99.8 4.9E-20 1.1E-24 148.8 10.6 120 3-152 26-148 (157)
309 PRK11174 cysteine/glutathione 99.8 6.7E-20 1.5E-24 176.6 13.3 129 3-136 377-540 (588)
310 COG1132 MdlB ABC-type multidru 99.8 1.5E-19 3.3E-24 173.5 15.0 128 3-136 356-520 (567)
311 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 1.3E-19 2.7E-24 173.7 14.3 137 3-152 32-226 (552)
312 TIGR02857 CydD thiol reductant 99.8 6.5E-20 1.4E-24 174.7 12.2 130 3-136 349-513 (529)
313 COG4988 CydD ABC-type transpor 99.8 9E-20 2E-24 170.6 12.8 129 4-136 349-511 (559)
314 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 1.6E-20 3.4E-25 184.7 8.1 127 4-136 507-668 (710)
315 TIGR00955 3a01204 The Eye Pigm 99.8 6.3E-20 1.4E-24 177.9 11.9 148 3-157 52-240 (617)
316 PRK10535 macrolide transporter 99.8 1.4E-19 3E-24 176.3 14.3 150 3-162 35-221 (648)
317 cd03238 ABC_UvrA The excision 99.8 2E-19 4.2E-24 148.4 13.0 116 3-136 22-145 (176)
318 PRK10636 putative ABC transpor 99.8 8.7E-20 1.9E-24 177.5 12.1 126 3-136 339-483 (638)
319 PRK11147 ABC transporter ATPas 99.8 9E-20 1.9E-24 177.4 12.1 125 3-136 346-493 (635)
320 TIGR01194 cyc_pep_trnsptr cycl 99.8 1.4E-19 3.1E-24 173.5 12.8 132 3-136 369-527 (555)
321 TIGR03375 type_I_sec_LssB type 99.8 1.2E-19 2.6E-24 178.1 12.3 129 4-136 493-656 (694)
322 PRK10636 putative ABC transpor 99.8 6.1E-19 1.3E-23 171.6 16.8 138 3-152 28-214 (638)
323 TIGR01846 type_I_sec_HlyB type 99.8 6.3E-20 1.4E-24 180.1 9.7 130 3-136 484-648 (694)
324 KOG0059 Lipid exporter ABCA1 a 99.8 1E-19 2.3E-24 182.3 11.5 156 3-167 592-782 (885)
325 PRK13657 cyclic beta-1,2-gluca 99.8 2.2E-19 4.7E-24 173.2 13.0 130 3-136 362-526 (588)
326 TIGR02203 MsbA_lipidA lipid A 99.8 1.9E-19 4.1E-24 172.8 12.4 130 3-136 359-524 (571)
327 PRK10522 multidrug transporter 99.8 2.5E-19 5.5E-24 171.4 13.1 132 3-136 350-506 (547)
328 KOG0055 Multidrug/pheromone ex 99.8 4.1E-19 8.9E-24 177.7 14.8 128 3-140 380-549 (1228)
329 PRK11147 ABC transporter ATPas 99.8 4.9E-19 1.1E-23 172.2 14.6 136 3-152 30-221 (635)
330 PRK10789 putative multidrug tr 99.8 2.9E-19 6.4E-24 171.8 12.1 130 3-136 342-506 (569)
331 TIGR01192 chvA glucan exporter 99.8 4.3E-19 9.2E-24 171.2 12.8 130 3-136 362-526 (585)
332 TIGR02204 MsbA_rel ABC transpo 99.8 3.8E-19 8.3E-24 170.9 12.4 129 4-136 368-531 (576)
333 COG4618 ArpD ABC-type protease 99.8 2.8E-19 6.1E-24 164.6 10.8 125 3-136 363-528 (580)
334 TIGR00958 3a01208 Conjugate Tr 99.8 4.8E-19 1E-23 174.3 13.1 128 3-136 508-670 (711)
335 PF00005 ABC_tran: ABC transpo 99.8 1E-19 2.2E-24 143.0 6.8 105 3-109 12-137 (137)
336 TIGR01193 bacteriocin_ABC ABC- 99.8 2.9E-19 6.4E-24 175.7 11.0 128 4-136 502-665 (708)
337 PLN03140 ABC transporter G fam 99.8 4.2E-19 9.2E-24 184.9 11.9 131 3-136 907-1075(1470)
338 COG0396 sufC Cysteine desulfur 99.8 1.5E-18 3.2E-23 146.2 12.4 131 3-136 31-200 (251)
339 KOG0061 Transporter, ABC super 99.8 1.2E-18 2.6E-23 168.4 13.5 131 3-136 57-226 (613)
340 COG4619 ABC-type uncharacteriz 99.8 1.2E-18 2.7E-23 140.5 11.2 130 4-137 31-191 (223)
341 TIGR00956 3a01205 Pleiotropic 99.8 9.8E-19 2.1E-23 182.1 13.6 131 3-136 790-958 (1394)
342 KOG0058 Peptide exporter, ABC 99.8 2.5E-18 5.4E-23 164.1 14.1 149 3-181 495-684 (716)
343 COG4167 SapF ABC-type antimicr 99.8 3.7E-18 8.1E-23 139.6 12.8 130 3-136 40-206 (267)
344 PLN03232 ABC transporter C fam 99.8 2.7E-18 6E-23 180.1 14.9 129 4-136 1264-1426(1495)
345 KOG0057 Mitochondrial Fe/S clu 99.8 1.1E-18 2.5E-23 161.8 10.3 130 4-140 380-547 (591)
346 PLN03073 ABC transporter F fam 99.8 1.3E-18 2.9E-23 170.7 10.7 134 3-152 536-692 (718)
347 COG4987 CydC ABC-type transpor 99.8 1.2E-18 2.7E-23 161.4 9.4 138 4-149 366-538 (573)
348 PTZ00265 multidrug resistance 99.8 3.8E-18 8.3E-23 178.2 13.3 131 3-136 1195-1415(1466)
349 PLN03130 ABC transporter C fam 99.8 7.5E-18 1.6E-22 177.4 15.5 130 3-136 1266-1429(1622)
350 TIGR00954 3a01203 Peroxysomal 99.8 4.3E-18 9.3E-23 166.2 12.6 127 3-136 479-635 (659)
351 TIGR00956 3a01205 Pleiotropic 99.8 2.7E-18 5.8E-23 178.9 10.8 131 3-136 88-266 (1394)
352 PTZ00265 multidrug resistance 99.8 6.3E-18 1.4E-22 176.6 13.3 129 3-136 412-636 (1466)
353 PTZ00243 ABC transporter; Prov 99.8 1.5E-17 3.3E-22 174.8 16.0 129 4-136 1338-1501(1560)
354 COG0488 Uup ATPase components 99.7 9.5E-18 2.1E-22 159.0 12.4 134 4-145 350-500 (530)
355 TIGR00957 MRP_assoc_pro multi 99.7 3.8E-18 8.3E-23 179.2 10.5 130 3-136 1313-1476(1522)
356 COG4136 ABC-type uncharacteriz 99.7 1.7E-17 3.6E-22 131.8 11.1 131 3-137 29-192 (213)
357 PLN03140 ABC transporter G fam 99.7 6E-18 1.3E-22 176.4 10.6 131 3-136 192-393 (1470)
358 COG4778 PhnL ABC-type phosphon 99.7 3.8E-18 8.3E-23 137.9 6.8 131 3-137 38-209 (235)
359 COG4615 PvdE ABC-type sideroph 99.7 3.5E-17 7.6E-22 147.1 12.3 140 3-145 350-513 (546)
360 PLN03073 ABC transporter F fam 99.7 1.5E-16 3.3E-21 156.2 16.4 138 4-152 205-409 (718)
361 cd03278 ABC_SMC_barmotin Barmo 99.7 3.2E-17 7E-22 137.5 8.7 126 4-136 24-172 (197)
362 TIGR01271 CFTR_protein cystic 99.7 2.6E-17 5.6E-22 172.6 9.3 128 4-136 1247-1408(1490)
363 TIGR01271 CFTR_protein cystic 99.7 8.7E-17 1.9E-21 168.7 12.5 130 3-136 453-604 (1490)
364 cd03273 ABC_SMC2_euk Eukaryoti 99.7 4.2E-17 9.1E-22 141.5 8.4 130 3-136 26-225 (251)
365 cd03272 ABC_SMC3_euk Eukaryoti 99.7 2.6E-16 5.7E-21 135.5 13.3 130 3-137 24-218 (243)
366 TIGR00957 MRP_assoc_pro multi 99.7 3.5E-16 7.7E-21 164.5 13.5 130 3-136 665-818 (1522)
367 cd03270 ABC_UvrA_I The excisio 99.7 5.5E-16 1.2E-20 132.7 12.3 72 60-136 118-195 (226)
368 COG4107 PhnK ABC-type phosphon 99.7 7.1E-16 1.5E-20 125.4 11.0 130 3-136 33-208 (258)
369 KOG0055 Multidrug/pheromone ex 99.7 4.2E-16 9E-21 156.4 11.6 154 3-181 1017-1206(1228)
370 PLN03130 ABC transporter C fam 99.7 3.9E-16 8.4E-21 164.6 11.9 130 4-136 645-796 (1622)
371 PLN03232 ABC transporter C fam 99.7 6.2E-16 1.3E-20 162.5 13.2 130 4-136 645-796 (1495)
372 KOG0062 ATPase component of AB 99.7 2E-16 4.2E-21 146.0 8.2 131 5-149 109-263 (582)
373 PTZ00243 ABC transporter; Prov 99.6 5.5E-16 1.2E-20 163.1 11.5 128 3-136 687-838 (1560)
374 cd03240 ABC_Rad50 The catalyti 99.6 2.4E-15 5.2E-20 126.9 12.5 122 4-136 24-179 (204)
375 COG4172 ABC-type uncharacteriz 99.6 2.4E-15 5.1E-20 135.8 13.0 157 3-181 37-240 (534)
376 cd03279 ABC_sbcCD SbcCD and ot 99.6 5.4E-16 1.2E-20 131.5 8.4 129 4-136 30-189 (213)
377 cd03275 ABC_SMC1_euk Eukaryoti 99.6 9.1E-16 2E-20 132.9 9.2 133 4-137 24-216 (247)
378 COG1245 Predicted ATPase, RNas 99.6 1.1E-15 2.4E-20 139.5 10.0 131 3-141 368-516 (591)
379 KOG0927 Predicted transporter 99.6 1.3E-15 2.7E-20 141.5 8.8 125 5-136 419-562 (614)
380 cd03274 ABC_SMC4_euk Eukaryoti 99.6 2.7E-16 5.8E-21 133.5 3.9 73 60-136 109-186 (212)
381 COG4138 BtuD ABC-type cobalami 99.6 1.5E-15 3.2E-20 123.6 8.0 129 4-136 27-188 (248)
382 cd03271 ABC_UvrA_II The excisi 99.6 7E-15 1.5E-19 128.4 12.0 73 59-136 149-228 (261)
383 KOG0056 Heavy metal exporter H 99.6 8.7E-15 1.9E-19 134.7 11.2 151 3-181 565-754 (790)
384 KOG0065 Pleiotropic drug resis 99.6 1.2E-15 2.6E-20 153.5 5.9 131 3-136 818-986 (1391)
385 COG1245 Predicted ATPase, RNas 99.6 7.7E-15 1.7E-19 134.1 8.8 126 3-136 101-269 (591)
386 cd03283 ABC_MutS-like MutS-lik 99.5 1.6E-14 3.4E-19 121.5 8.5 116 4-136 27-144 (199)
387 KOG0054 Multidrug resistance-a 99.5 1.2E-14 2.7E-19 148.5 9.3 129 4-136 1168-1330(1381)
388 COG5265 ATM1 ABC-type transpor 99.5 4.8E-14 1E-18 127.9 9.9 133 3-138 290-457 (497)
389 cd03280 ABC_MutS2 MutS2 homolo 99.5 4.9E-14 1.1E-18 118.4 8.1 106 4-136 30-147 (200)
390 cd03276 ABC_SMC6_euk Eukaryoti 99.5 2.8E-13 6.1E-18 113.7 12.5 125 4-136 23-172 (198)
391 COG1129 MglA ABC-type sugar tr 99.5 1.3E-13 2.7E-18 128.9 10.2 144 3-154 286-471 (500)
392 COG4178 ABC-type uncharacteriz 99.5 1.3E-13 2.8E-18 131.2 10.1 128 5-136 422-570 (604)
393 KOG0054 Multidrug resistance-a 99.5 2.7E-13 5.9E-18 138.8 11.5 131 3-136 548-699 (1381)
394 KOG0066 eIF2-interacting prote 99.5 2.3E-13 5E-18 124.1 9.8 123 3-136 614-757 (807)
395 smart00534 MUTSac ATPase domai 99.4 1.5E-13 3.2E-18 114.1 6.0 115 4-136 1-118 (185)
396 cd03243 ABC_MutS_homologs The 99.4 2.7E-13 5.8E-18 114.0 6.0 114 4-136 31-147 (202)
397 KOG0062 ATPase component of AB 99.4 1.1E-12 2.3E-17 121.6 9.6 128 5-144 393-542 (582)
398 KOG0927 Predicted transporter 99.4 2E-12 4.3E-17 120.4 11.3 117 5-125 104-266 (614)
399 COG4170 SapD ABC-type antimicr 99.4 2.3E-12 5E-17 107.9 8.7 140 3-152 34-227 (330)
400 cd03277 ABC_SMC5_euk Eukaryoti 99.4 2.9E-12 6.3E-17 108.8 9.1 55 79-136 125-188 (213)
401 KOG2355 Predicted ABC-type tra 99.3 7.4E-12 1.6E-16 104.5 10.1 129 5-140 43-209 (291)
402 cd03227 ABC_Class2 ABC-type Cl 99.3 8.2E-12 1.8E-16 101.5 9.2 109 4-136 23-137 (162)
403 cd03239 ABC_SMC_head The struc 99.3 1.1E-11 2.3E-16 102.5 10.0 50 86-136 102-154 (178)
404 cd03281 ABC_MSH5_euk MutS5 hom 99.3 7.9E-12 1.7E-16 106.2 8.9 106 4-129 31-140 (213)
405 cd03282 ABC_MSH4_euk MutS4 hom 99.3 6.6E-12 1.4E-16 106.0 7.4 114 4-136 31-147 (204)
406 PRK00635 excinuclease ABC subu 99.3 2.9E-11 6.3E-16 127.0 13.4 71 61-136 791-868 (1809)
407 COG2401 ABC-type ATPase fused 99.3 2.7E-11 5.8E-16 110.1 10.7 131 3-137 410-565 (593)
408 TIGR02858 spore_III_AA stage I 99.3 4.3E-11 9.4E-16 105.0 10.9 39 3-41 112-150 (270)
409 PRK00349 uvrA excinuclease ABC 99.3 8.4E-11 1.8E-15 118.3 14.3 72 60-136 811-889 (943)
410 PTZ00132 GTP-binding nuclear p 99.2 5.3E-11 1.1E-15 100.6 9.0 39 87-128 161-205 (215)
411 TIGR00630 uvra excinuclease AB 99.2 1.5E-10 3.3E-15 116.2 13.2 74 60-136 809-887 (924)
412 cd03285 ABC_MSH2_euk MutS2 hom 99.2 6.3E-11 1.4E-15 101.3 8.7 110 4-136 32-149 (222)
413 cd03284 ABC_MutS1 MutS1 homolo 99.2 4.9E-11 1.1E-15 101.5 7.6 108 4-136 32-149 (216)
414 KOG0066 eIF2-interacting prote 99.2 3.6E-11 7.8E-16 110.0 6.7 133 5-145 293-473 (807)
415 KOG0060 Long-chain acyl-CoA tr 99.2 1.5E-10 3.2E-15 108.8 10.8 127 4-136 463-623 (659)
416 cd03287 ABC_MSH3_euk MutS3 hom 99.1 2E-10 4.3E-15 98.2 9.1 115 4-136 33-150 (222)
417 TIGR01069 mutS2 MutS2 family p 99.1 1.2E-10 2.7E-15 115.4 8.3 116 3-136 323-441 (771)
418 PF02463 SMC_N: RecF/RecN/SMC 99.0 1.9E-09 4E-14 91.4 10.7 68 59-136 123-195 (220)
419 KOG0063 RNAse L inhibitor, ABC 99.0 1.1E-09 2.3E-14 100.1 8.5 126 3-133 368-510 (592)
420 KOG0064 Peroxisomal long-chain 99.0 9.6E-10 2.1E-14 102.6 8.1 123 4-136 510-665 (728)
421 PRK08533 flagellar accessory p 99.0 1.8E-09 4E-14 92.7 7.7 39 98-137 117-160 (230)
422 cd03241 ABC_RecN RecN ATPase i 99.0 1.3E-09 2.8E-14 96.0 6.8 55 80-136 170-229 (276)
423 cd01120 RecA-like_NTPases RecA 98.9 4.9E-09 1.1E-13 83.2 9.3 121 4-137 1-134 (165)
424 COG3910 Predicted ATPase [Gene 98.9 2.7E-08 6E-13 82.1 12.4 124 4-136 39-184 (233)
425 COG3845 ABC-type uncharacteriz 98.9 1.7E-08 3.7E-13 93.6 11.8 142 3-152 285-471 (501)
426 PRK13695 putative NTPase; Prov 98.8 5.1E-09 1.1E-13 85.8 5.4 122 4-136 2-132 (174)
427 PRK00409 recombination and DNA 98.8 1.7E-08 3.6E-13 100.6 9.6 112 4-136 329-446 (782)
428 PRK10416 signal recognition pa 98.8 1.9E-07 4.2E-12 83.9 14.5 38 3-40 115-152 (318)
429 KOG0065 Pleiotropic drug resis 98.8 1.4E-08 3.1E-13 103.2 7.9 129 4-135 143-316 (1391)
430 cd01131 PilT Pilus retraction 98.8 6E-08 1.3E-12 81.4 10.4 102 4-136 3-105 (198)
431 COG0178 UvrA Excinuclease ATPa 98.7 1.2E-07 2.6E-12 92.6 12.6 60 80-140 822-886 (935)
432 cd03286 ABC_MSH6_euk MutS6 hom 98.7 5.4E-08 1.2E-12 83.0 9.2 114 4-136 32-149 (218)
433 cd01124 KaiC KaiC is a circadi 98.7 8.8E-08 1.9E-12 78.6 10.3 39 98-137 95-137 (187)
434 PRK00635 excinuclease ABC subu 98.7 1.4E-07 3.1E-12 99.8 13.6 73 61-136 1681-1758(1809)
435 cd03242 ABC_RecF RecF is a rec 98.7 3.6E-08 7.7E-13 86.6 7.0 46 78-126 181-238 (270)
436 TIGR02788 VirB11 P-type DNA tr 98.7 6.6E-08 1.4E-12 86.5 8.5 34 3-36 145-178 (308)
437 smart00382 AAA ATPases associa 98.7 2.7E-07 5.9E-12 70.3 10.1 34 3-36 3-36 (148)
438 COG1100 GTPase SAR1 and relate 98.7 9.9E-09 2.1E-13 86.3 2.1 122 3-126 6-137 (219)
439 PRK07721 fliI flagellum-specif 98.6 2E-07 4.4E-12 87.1 10.0 38 3-40 159-196 (438)
440 TIGR00554 panK_bact pantothena 98.6 3.3E-08 7.1E-13 87.7 4.1 39 2-40 62-102 (290)
441 PRK14974 cell division protein 98.6 2.2E-06 4.8E-11 77.6 15.3 102 2-117 140-243 (336)
442 cd01876 YihA_EngB The YihA (En 98.6 5.4E-06 1.2E-10 65.6 16.0 20 5-24 2-21 (170)
443 cd04163 Era Era subfamily. Er 98.6 6.6E-06 1.4E-10 64.8 16.4 23 3-25 4-26 (168)
444 KOG0063 RNAse L inhibitor, ABC 98.6 1.5E-07 3.2E-12 86.3 7.0 129 4-136 102-269 (592)
445 cd01888 eIF2_gamma eIF2-gamma 98.5 3.8E-06 8.3E-11 70.5 14.6 30 4-33 2-32 (203)
446 PF13304 AAA_21: AAA domain; P 98.5 2.3E-07 4.9E-12 77.8 7.1 54 82-136 238-295 (303)
447 cd01898 Obg Obg subfamily. Th 98.5 2.4E-06 5.2E-11 68.5 12.8 21 5-25 3-23 (170)
448 cd00880 Era_like Era (E. coli 98.5 1.4E-06 3.1E-11 67.7 11.1 77 98-181 44-120 (163)
449 PRK00089 era GTPase Era; Revie 98.5 7.6E-06 1.7E-10 72.4 16.9 23 3-25 6-28 (292)
450 TIGR01420 pilT_fam pilus retra 98.5 8.3E-07 1.8E-11 80.6 10.8 103 3-136 123-226 (343)
451 cd01881 Obg_like The Obg-like 98.5 6.5E-07 1.4E-11 72.1 9.1 19 7-25 1-19 (176)
452 PRK09270 nucleoside triphospha 98.5 8.6E-08 1.9E-12 82.1 4.0 37 2-38 33-70 (229)
453 cd03115 SRP The signal recogni 98.5 2.2E-06 4.7E-11 69.9 11.8 38 3-40 1-38 (173)
454 PRK06067 flagellar accessory p 98.5 1.3E-06 2.7E-11 74.9 10.7 35 3-38 26-61 (234)
455 cd01130 VirB11-like_ATPase Typ 98.5 1.5E-07 3.2E-12 78.1 4.7 35 3-37 26-60 (186)
456 cd01128 rho_factor Transcripti 98.5 6.8E-07 1.5E-11 77.7 8.9 28 4-31 18-45 (249)
457 PF00448 SRP54: SRP54-type pro 98.5 9.8E-07 2.1E-11 74.0 9.5 110 2-126 1-112 (196)
458 PRK00454 engB GTP-binding prot 98.5 1.9E-05 4.2E-10 65.0 16.6 22 3-24 25-46 (196)
459 smart00053 DYNc Dynamin, GTPas 98.4 3.7E-06 8.1E-11 72.7 12.6 31 4-34 28-60 (240)
460 PRK14723 flhF flagellar biosyn 98.4 3.8E-06 8.3E-11 82.9 14.1 91 3-113 186-280 (767)
461 TIGR00436 era GTP-binding prot 98.4 7.1E-06 1.5E-10 71.9 14.3 22 4-25 2-23 (270)
462 cd00820 PEPCK_HprK Phosphoenol 98.4 2.7E-07 6E-12 69.9 4.0 32 3-40 16-47 (107)
463 PRK09866 hypothetical protein; 98.4 3E-05 6.6E-10 75.0 18.2 24 3-26 70-93 (741)
464 cd00009 AAA The AAA+ (ATPases 98.4 1.7E-06 3.7E-11 66.6 8.2 33 4-36 21-53 (151)
465 cd02025 PanK Pantothenate kina 98.4 2.1E-07 4.6E-12 79.4 3.3 36 4-39 1-38 (220)
466 TIGR00064 ftsY signal recognit 98.4 6.1E-06 1.3E-10 72.7 12.4 109 3-126 73-183 (272)
467 cd04139 RalA_RalB RalA/RalB su 98.4 2.3E-06 5E-11 67.9 8.9 23 3-25 1-23 (164)
468 cd03112 CobW_like The function 98.4 2.8E-06 6E-11 68.8 9.2 24 4-27 2-25 (158)
469 TIGR03238 dnd_assoc_3 dnd syst 98.4 3.6E-07 7.8E-12 85.5 4.3 37 3-41 33-70 (504)
470 PRK11889 flhF flagellar biosyn 98.3 4.1E-06 9E-11 77.0 11.0 38 3-40 242-279 (436)
471 PF00009 GTP_EFTU: Elongation 98.3 1.1E-06 2.4E-11 72.6 6.5 111 98-243 69-184 (188)
472 cd01125 repA Hexameric Replica 98.3 5.5E-06 1.2E-10 71.3 10.9 38 98-137 111-156 (239)
473 TIGR03015 pepcterm_ATPase puta 98.3 1.6E-05 3.5E-10 69.1 13.3 96 4-116 45-141 (269)
474 TIGR00231 small_GTP small GTP- 98.3 2.8E-05 6.1E-10 60.3 13.5 24 3-26 2-25 (161)
475 PRK14722 flhF flagellar biosyn 98.3 8.5E-06 1.8E-10 74.7 11.8 91 3-113 138-232 (374)
476 PRK05703 flhF flagellar biosyn 98.3 5.7E-06 1.2E-10 77.2 10.9 101 3-124 222-326 (424)
477 cd04160 Arfrp1 Arfrp1 subfamil 98.3 8.4E-06 1.8E-10 65.3 10.5 23 5-27 2-24 (167)
478 cd02023 UMPK Uridine monophosp 98.3 5.8E-07 1.3E-11 75.0 3.8 34 4-39 1-34 (198)
479 PF01926 MMR_HSR1: 50S ribosom 98.3 1.3E-06 2.9E-11 66.3 5.4 21 5-25 2-22 (116)
480 PRK06793 fliI flagellum-specif 98.3 5.4E-06 1.2E-10 77.2 10.2 98 4-113 158-262 (432)
481 TIGR00235 udk uridine kinase. 98.3 6.8E-07 1.5E-11 75.3 3.8 35 3-39 7-41 (207)
482 cd01895 EngA2 EngA2 subfamily. 98.3 2.8E-05 6E-10 61.9 13.0 23 3-25 3-25 (174)
483 cd00157 Rho Rho (Ras homology) 98.3 6.5E-06 1.4E-10 66.0 9.2 23 4-26 2-24 (171)
484 cd01884 EF_Tu EF-Tu subfamily. 98.3 2.9E-05 6.2E-10 65.1 13.2 24 3-26 3-26 (195)
485 cd00881 GTP_translation_factor 98.3 2.2E-05 4.8E-10 63.7 12.3 25 5-29 2-26 (189)
486 COG1618 Predicted nucleotide k 98.2 3E-06 6.5E-11 68.4 6.2 122 1-136 4-136 (179)
487 PRK06995 flhF flagellar biosyn 98.2 1.7E-05 3.7E-10 74.9 12.1 87 3-109 257-345 (484)
488 PF02421 FeoB_N: Ferrous iron 98.2 1.5E-05 3.3E-10 64.4 10.3 118 4-181 2-121 (156)
489 PRK00349 uvrA excinuclease ABC 98.2 3.9E-06 8.5E-11 85.1 8.3 71 61-136 471-547 (943)
490 TIGR03499 FlhF flagellar biosy 98.2 6.5E-06 1.4E-10 72.9 8.5 38 3-40 195-234 (282)
491 PRK10078 ribose 1,5-bisphospho 98.2 1.3E-06 2.8E-11 72.3 3.8 34 1-37 1-34 (186)
492 cd00882 Ras_like_GTPase Ras-li 98.2 1.2E-05 2.5E-10 61.6 8.8 21 7-27 1-21 (157)
493 cd04104 p47_IIGP_like p47 (47- 98.2 1.9E-05 4E-10 66.0 10.5 34 3-36 2-35 (197)
494 PRK13898 type IV secretion sys 98.2 2.9E-05 6.3E-10 78.0 13.7 34 4-37 448-481 (800)
495 PRK05480 uridine/cytidine kina 98.2 2.1E-06 4.5E-11 72.3 4.6 37 2-40 6-42 (209)
496 PRK05399 DNA mismatch repair p 98.2 2.7E-06 5.9E-11 85.8 5.9 111 4-136 609-726 (854)
497 cd01862 Rab7 Rab7 subfamily. 98.2 3.1E-05 6.7E-10 62.1 11.1 22 4-25 2-23 (172)
498 TIGR00630 uvra excinuclease AB 98.1 5.6E-06 1.2E-10 83.8 8.0 71 61-136 469-545 (924)
499 cd01878 HflX HflX subfamily. 98.1 1.5E-05 3.2E-10 66.5 9.3 23 3-25 42-64 (204)
500 cd04165 GTPBP1_like GTPBP1-lik 98.1 9.7E-05 2.1E-09 63.2 14.4 29 5-33 2-31 (224)
No 1
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=100.00 E-value=1.6e-56 Score=374.04 Aligned_cols=243 Identities=46% Similarity=0.826 Sum_probs=224.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHh
Q 025844 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (247)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~ 80 (247)
|+|+++||||+||||||+|..++.++...++.+.++|+||+++..+|++..+|++.++++++|+++++||||++++|+++
T Consensus 1 m~fgqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~ 80 (290)
T KOG1533|consen 1 MPFGQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEY 80 (290)
T ss_pred CCcceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhhhhHHHhHH
Q 025844 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (247)
Q Consensus 81 l~~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (247)
+..+. .|+...+-.. ...|+|+|+|||++.++++...+++++.+.+.+.++++|+++|+|++++|++|+|.+++++.+
T Consensus 81 l~~~i-dwl~~~l~~~-~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~t 158 (290)
T KOG1533|consen 81 LEANI-DWLLEKLKPL-TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLAT 158 (290)
T ss_pred HHhhh-HHHHHHhhhc-cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHH
Confidence 99999 9998888763 668999999999999999999989999999999999999999999999999999999999999
Q ss_pred HhhccCCeeeeecccccccchhhh----hhhcc-cCHHHHHHHhhc-ccchhHHHHHHHHHHHhhhcCCeeeEEeeccCh
Q 025844 161 MVQLELPHVNILSKMDLVTNKKEI----EDYLN-PESQFLLSELNQ-HMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKE 234 (247)
Q Consensus 161 ~~~~~~p~i~vlsk~dll~~~~~~----~~~~~-~~~~~l~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 234 (247)
|+.++.|||||+||+|++++++.+ +-+.+ .|..+|...++. +..++|++||++||++|+||++|+|.||+++|+
T Consensus 159 Ml~melphVNvlSK~Dl~~~ygkl~f~ld~yt~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~~LVSF~~L~v~nk 238 (290)
T KOG1533|consen 159 MLHMELPHVNVLSKADLLKKYGKLPFNLDFYTEVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDFNLVSFEVLDVDNK 238 (290)
T ss_pred HHhhcccchhhhhHhHHHHhhcccccccchhhhhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhccCceeeEEeeccCH
Confidence 999999999999999999987533 22222 256666655544 355799999999999999999999999999999
Q ss_pred H---HHHHHhhhcc
Q 025844 235 S---RLLSQIMKMS 245 (247)
Q Consensus 235 ~---~l~~~id~~~ 245 (247)
| |+++.|||||
T Consensus 239 eSml~l~~~IDkAn 252 (290)
T KOG1533|consen 239 ESMLRLQQTIDKAN 252 (290)
T ss_pred HHHHHHHHHHHhcc
Confidence 9 9999999997
No 2
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=100.00 E-value=1.1e-53 Score=351.99 Aligned_cols=241 Identities=65% Similarity=1.166 Sum_probs=225.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHh
Q 025844 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (247)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~ 80 (247)
|+|.+.++||+||||||+|+.+..+.+..++++.++|+||+++.+.|+..+++||.|+++++|+.+.+||||++++|+++
T Consensus 2 m~ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f~y~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEy 81 (273)
T KOG1534|consen 2 MRYAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHFNYPVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEY 81 (273)
T ss_pred CceeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHhhCCcccccHHHhccHHHHHHHhccCCCccchhHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhhhhHHHhHH
Q 025844 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (247)
Q Consensus 81 l~~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (247)
+.+++ .|+...+..+ +.+|+|+|+|||++++++..+++++++.+++...++++|+++|+.++.|..+|+|.++.++++
T Consensus 82 l~~Nl-dwL~~~~Gd~-eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsA 159 (273)
T KOG1534|consen 82 LLENL-DWLEEEIGDV-EDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSA 159 (273)
T ss_pred HHHHH-HHHHhhccCc-cCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHH
Confidence 99999 9999887765 889999999999999999999999999998889999999999999999999999999999999
Q ss_pred HhhccCCeeeeecccccccc--hhhhhhhcccCHHHHHH--HhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChH-
Q 025844 161 MVQLELPHVNILSKMDLVTN--KKEIEDYLNPESQFLLS--ELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES- 235 (247)
Q Consensus 161 ~~~~~~p~i~vlsk~dll~~--~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~- 235 (247)
|+++++|||||+||.||++. +..+++|+++|...+.+ +.+. ..+||.+|++.++.+++||++|+|+|++..++|
T Consensus 160 Mi~lE~P~INvlsKMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~-~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeS 238 (273)
T KOG1534|consen 160 MISLEVPHINVLSKMDLLKDKNKKELERFLNPDEYLLLEDSEINL-RSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEES 238 (273)
T ss_pred HHHhcCcchhhhhHHHHhhhhhHHHHHHhcCCchhhhhccccccc-ccHHHHHHHHHHHHHhccccceeeeecCCCCHHH
Confidence 99999999999999999985 24789999998776654 3333 337999999999999999999999999999999
Q ss_pred --HHHHHhhhc
Q 025844 236 --RLLSQIMKM 244 (247)
Q Consensus 236 --~l~~~id~~ 244 (247)
.++++||.|
T Consensus 239 i~~iL~~ID~a 249 (273)
T KOG1534|consen 239 INIILSYIDDA 249 (273)
T ss_pred HHHHHHHHHHH
Confidence 999999976
No 3
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=100.00 E-value=2.1e-47 Score=328.97 Aligned_cols=230 Identities=51% Similarity=0.877 Sum_probs=179.9
Q ss_pred EEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhhhhHH
Q 025844 7 VIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLD 86 (247)
Q Consensus 7 iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~~~~~ 86 (247)
|+||+||||||||+.+..+++..+.++.+.|+||+++.++|.+++++||.++++++|++++|||||+..+|++++..++
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~~- 79 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEENI- 79 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGGH-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHHH-
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhhhhHHHhHHHhhccC
Q 025844 87 DWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLEL 166 (247)
Q Consensus 87 ~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~ 166 (247)
.|+...+... +++|+|+|+|||++.++++..++.+++.|++ +.++++||++|++.+.+|.+|++.++++++.|+++++
T Consensus 80 d~l~~~i~~~-~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~-~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~l 157 (238)
T PF03029_consen 80 DWLDEEIEKY-EDDYLLFDTPGQIELFTHSDSGRKIVERLQK-NGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLEL 157 (238)
T ss_dssp HHHHHHHHHH-H-SEEEEE--SSHHHHHHSHHHHHHHHTSSS-----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhhc-CCcEEEEeCCCCEEEEEechhHHHHHHHHhh-hcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCC
Confidence 8988887655 6799999999999999999999889999976 7788899999999999999999999999999999999
Q ss_pred Ceeeeecccccccch--hhhhhhcccCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCe-eeEEeeccChH---HHHHH
Q 025844 167 PHVNILSKMDLVTNK--KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMV-SFMPLDLRKES---RLLSQ 240 (247)
Q Consensus 167 p~i~vlsk~dll~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~---~l~~~ 240 (247)
||++|+||+|++++. ..++++. +++.+...+... ++++++++++++++|+++ +|+|+|+++++ +|+++
T Consensus 158 P~vnvlsK~Dl~~~~~~~~l~~~~--d~~~l~~~~~~~----~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~ 231 (238)
T PF03029_consen 158 PHVNVLSKIDLLSKYLEFILEWFE--DPDSLEDLLESD----YKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAA 231 (238)
T ss_dssp EEEEEE--GGGS-HHHHHHHHHHH--SHHHHHHHHHT-----HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHH
T ss_pred CEEEeeeccCcccchhHHHHHHhc--ChHHHHHHHHHH----HHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHH
Confidence 999999999999843 2333333 445554444432 899999999999999998 99999999999 99999
Q ss_pred hhhcc
Q 025844 241 IMKMS 245 (247)
Q Consensus 241 id~~~ 245 (247)
||+|.
T Consensus 232 id~a~ 236 (238)
T PF03029_consen 232 IDKAN 236 (238)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99974
No 4
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=100.00 E-value=6.7e-34 Score=243.11 Aligned_cols=238 Identities=27% Similarity=0.454 Sum_probs=206.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l 81 (247)
+.++.++|.+|||||||++-|.+++....-..++.|+||+..++||+.+++|||.+...++|++++|||||+...|++.+
T Consensus 19 p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLNLF 98 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLNLF 98 (366)
T ss_pred CcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHHHH
Confidence 46889999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred hhhHH--HHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhhhhHHHhH
Q 025844 82 EDNLD--DWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS 159 (247)
Q Consensus 82 ~~~~~--~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~ 159 (247)
..++. ..+.+.... +-+++|+|.|||++.+++.....-+.+.|+.. ..++++|.+|+.....|..|+|+++.+++
T Consensus 99 ~tk~dqv~~~iek~~~--~~~~~liDTPGQIE~FtWSAsGsIIte~lass-~ptvv~YvvDt~rs~~p~tFMSNMlYAcS 175 (366)
T KOG1532|consen 99 ATKFDQVIELIEKRAE--EFDYVLIDTPGQIEAFTWSASGSIITETLASS-FPTVVVYVVDTPRSTSPTTFMSNMLYACS 175 (366)
T ss_pred HHHHHHHHHHHHHhhc--ccCEEEEcCCCceEEEEecCCccchHhhHhhc-CCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence 88874 234444444 56799999999999999999884455667654 46678999999999999999999999999
Q ss_pred HHhhccCCeeeeecccccccchhhhhhhcccCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCC-eeeEEeeccChH---
Q 025844 160 AMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKES--- 235 (247)
Q Consensus 160 ~~~~~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~--- 235 (247)
.+++..+|.+.||||+|+...++.++++- |.+.+.+++++........|.++|.-.+++|.- +.+.-++..+++
T Consensus 176 ilyktklp~ivvfNK~Dv~d~~fa~eWm~--DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~d 253 (366)
T KOG1532|consen 176 ILYKTKLPFIVVFNKTDVSDSEFALEWMT--DFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFD 253 (366)
T ss_pred HHHhccCCeEEEEecccccccHHHHHHHH--HHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHH
Confidence 99999999999999999999886555432 577888888765556888999999999999876 888888888777
Q ss_pred HHHHHhhhc
Q 025844 236 RLLSQIMKM 244 (247)
Q Consensus 236 ~l~~~id~~ 244 (247)
.++..+|.+
T Consensus 254 df~~av~~~ 262 (366)
T KOG1532|consen 254 DFFTAVDES 262 (366)
T ss_pred HHHHHHHHH
Confidence 888888754
No 5
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=2.3e-30 Score=215.56 Aligned_cols=141 Identities=20% Similarity=0.256 Sum_probs=117.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC---------------CCCCCCCcccChhhhHh---------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------------AENFDYPVAMDIRELIS--------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~---------------~~~~~y~~~~~v~e~i~--------- 58 (247)
-+++|+||+|||||||+|+|.++.+|++|+|+++|.++. .|++..+|.+|+.+|+.
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~ 108 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKL 108 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCC
Confidence 478999999999999999999999999999999996553 15566688999999986
Q ss_pred --------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (247)
Q Consensus 59 --------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (247)
+.++++++||.......+. .+++|+ |++|||||+. +|++++|||||+ |||+...++. +.++.|+
T Consensus 109 ~k~eA~~~A~~lL~~VGL~~ka~~yP~--qLSGGQqQRVAIARALaM--~P~vmLFDEPTSALDPElv~EVL-~vm~~LA 183 (240)
T COG1126 109 SKAEAREKALELLEKVGLADKADAYPA--QLSGGQQQRVAIARALAM--DPKVMLFDEPTSALDPELVGEVL-DVMKDLA 183 (240)
T ss_pred CHHHHHHHHHHHHHHcCchhhhhhCcc--ccCcHHHHHHHHHHHHcC--CCCEEeecCCcccCCHHHHHHHH-HHHHHHH
Confidence 6788999999887544433 466654 5999999999 999999999999 9999999999 9999999
Q ss_pred hCCCeEEEEEecccccccchhHHhh
Q 025844 128 SRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++|.|.++|. |.+.-.....+
T Consensus 184 ~eGmTMivVT----HEM~FAr~Vad 204 (240)
T COG1126 184 EEGMTMIIVT----HEMGFAREVAD 204 (240)
T ss_pred HcCCeEEEEe----chhHHHHHhhh
Confidence 9999998774 55544444444
No 6
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=5.3e-30 Score=220.26 Aligned_cols=154 Identities=16% Similarity=0.288 Sum_probs=123.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----CCCCC-Cc--------ccChhhhHh-----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDY-PV--------AMDIRELIS----------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----~~~~y-~~--------~~~v~e~i~----------- 58 (247)
-+++|+||||||||||+|++.|+++|.+|+|.+.|.+... ..++| || .+||+|.+.
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 3689999999999999999999999999999999875422 23555 22 457888775
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (247)
Q Consensus 59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (247)
++++++++|+....++. +..+|+|+ |+.|||||+. +|++++||||++ +|+.++..++ ++++++
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~--i~~LSGGQ~QRV~lARAL~~--~p~lllLDEP~~gvD~~~~~~i~-~lL~~l 185 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQ--IGELSGGQKQRVLLARALAQ--NPDLLLLDEPFTGVDVAGQKEIY-DLLKEL 185 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCc--ccccCcHHHHHHHHHHHhcc--CCCEEEecCCcccCCHHHHHHHH-HHHHHH
Confidence 78899999999877666 44677765 4999999999 999999999999 9999999999 999999
Q ss_pred HhCCCeEEEEEecccccccchhHHhhhhHHHhHHHhhcc
Q 025844 127 KSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLE 165 (247)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~ 165 (247)
+++|++|++|+ |.+.....+++.+++.....+..+
T Consensus 186 ~~eg~tIl~vt----HDL~~v~~~~D~vi~Ln~~~~~~G 220 (254)
T COG1121 186 RQEGKTVLMVT----HDLGLVMAYFDRVICLNRHLIASG 220 (254)
T ss_pred HHCCCEEEEEe----CCcHHhHhhCCEEEEEcCeeEecc
Confidence 88899998885 666666677765444443333333
No 7
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.96 E-value=4.5e-30 Score=221.61 Aligned_cols=161 Identities=21% Similarity=0.351 Sum_probs=124.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-------CcccChhhhHh----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS---------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-------~~~~~v~e~i~---------- 58 (247)
-+++|+||||||||||+|+|+|+++|.+|+|.++|.++.. +.++| +..++|+|.+.
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~ 108 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLF 108 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccc
Confidence 4789999999999999999999999999999999987632 22222 22455555553
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
++++|+.+|+.....+. .+.+++|.+ +|||+|+++ +|++++|||||+ ||+.++.+++ +++++
T Consensus 109 ~~~~~~D~~~v~~aL~~~~~~~la~r~--~~~LSGGerQrv~iArALaQ--~~~iLLLDEPTs~LDi~~Q~evl-~ll~~ 183 (258)
T COG1120 109 GRPSKEDEEIVEEALELLGLEHLADRP--VDELSGGERQRVLIARALAQ--ETPILLLDEPTSHLDIAHQIEVL-ELLRD 183 (258)
T ss_pred cCCCHhHHHHHHHHHHHhCcHHHhcCc--ccccChhHHHHHHHHHHHhc--CCCEEEeCCCccccCHHHHHHHH-HHHHH
Confidence 77789999999887666 456777654 999999999 999999999999 9999999999 99999
Q ss_pred HHh-CCCeEEEEEecccccccchhHHhhhhHHHh-HHHhhccCCeeeeec
Q 025844 126 LKS-RNFNVCAVYLLDSQFITDVTKFISGCMASL-SAMVQLELPHVNILS 173 (247)
Q Consensus 126 l~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~-~~~~~~~~p~i~vls 173 (247)
+++ +|.++++|. |.+.-...|++.+++.. +.++..+.|. .|++
T Consensus 184 l~~~~~~tvv~vl----HDlN~A~ryad~~i~lk~G~i~a~G~p~-evlT 228 (258)
T COG1120 184 LNREKGLTVVMVL----HDLNLAARYADHLILLKDGKIVAQGTPE-EVLT 228 (258)
T ss_pred HHHhcCCEEEEEe----cCHHHHHHhCCEEEEEECCeEEeecCcc-hhcC
Confidence 985 588887773 55555677777665544 3444555554 3443
No 8
>PRK13768 GTPase; Provisional
Probab=99.96 E-value=3.8e-27 Score=204.96 Aligned_cols=238 Identities=32% Similarity=0.577 Sum_probs=200.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHh
Q 025844 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (247)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~ 80 (247)
|++++++.||.||||||++..++..+...+.++.+.+.||+....+|.++.++++.++.++++...+++|++...++++.
T Consensus 1 ~~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~~~~~~ 80 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASVDL 80 (253)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhheeHHHHHHHcCCCCchHHHHHHHH
Confidence 78999999999999999999999998877778999999999988899889999999999999999999999999988876
Q ss_pred hhhhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhhhhHHHhHH
Q 025844 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (247)
Q Consensus 81 l~~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (247)
...+. .++...+... +++++++|.|++.+++.++...+.+.+.+.+.. +-++++++|+....++.++.....+....
T Consensus 81 ~~~~~-~~l~~~l~~~-~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~-~~~ii~liD~~~~~~~~d~~~~~~l~~~~ 157 (253)
T PRK13768 81 LLTKA-DEIKEEIESL-DADYVLVDTPGQMELFAFRESGRKLVERLSGSS-KSVVVFLIDAVLAKTPSDFVSLLLLALSV 157 (253)
T ss_pred HHHHH-HHHHHHHHhc-CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcC-CeEEEEEechHHhCCHHHHHHHHHHHHHH
Confidence 76666 6666666554 679999999999999988888877888886544 56678899998888899998888888888
Q ss_pred HhhccCCeeeeecccccccchhhh---hhhcccCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCC-eeeEEeeccChH-
Q 025844 161 MVQLELPHVNILSKMDLVTNKKEI---EDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKES- 235 (247)
Q Consensus 161 ~~~~~~p~i~vlsk~dll~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~- 235 (247)
+.+.+.|++.|+||+|++++. +. .++++ +++.+.++++...+.. ++|++++++.+++++. .++.|+|+.+++
T Consensus 158 ~~~~~~~~i~v~nK~D~~~~~-~~~~~~~~l~-~~~~~~~~l~~~~~~~-~~~~~~~~~~i~~~~~~~~vi~iSa~~~~g 234 (253)
T PRK13768 158 QLRLGLPQIPVLNKADLLSEE-ELERILKWLE-DPEYLLEELKLEKGLQ-GLLSLELLRALEETGLPVRVIPVSAKTGEG 234 (253)
T ss_pred HHHcCCCEEEEEEhHhhcCch-hHHHHHHHHh-CHHHHHHHHhcccchH-HHHHHHHHHHHHHHCCCCcEEEEECCCCcC
Confidence 889999999999999999865 33 33344 6667766666544445 8999999999999987 599999998877
Q ss_pred --HHHHHhhhc
Q 025844 236 --RLLSQIMKM 244 (247)
Q Consensus 236 --~l~~~id~~ 244 (247)
.|...|.+.
T Consensus 235 l~~L~~~I~~~ 245 (253)
T PRK13768 235 FDELYAAIQEV 245 (253)
T ss_pred HHHHHHHHHHH
Confidence 787777664
No 9
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=1.7e-27 Score=211.23 Aligned_cols=144 Identities=16% Similarity=0.290 Sum_probs=118.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------------CCCCCCcccChhhhHh-----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDYPVAMDIRELIS----------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------------~~~~y~~~~~v~e~i~----------- 58 (247)
-+++++||||||||||+|+|+|+++|++|+|.+.|.++.. +...+++.+|++|++.
T Consensus 32 ei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~ 111 (293)
T COG1131 32 EIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKE 111 (293)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChh
Confidence 3789999999999999999999999999999999987643 2233456789998875
Q ss_pred -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 025844 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (247)
Q Consensus 59 -----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (247)
++++++.++|.+..... ...++.|++ +.||.+|+. +|+++||||||+ ||+.++..+. ++++.++++|
T Consensus 112 ~~~~~~~~~l~~~~L~~~~~~~--~~~lS~G~kqrl~ia~aL~~--~P~lliLDEPt~GLDp~~~~~~~-~~l~~l~~~g 186 (293)
T COG1131 112 EAEERIEELLELFGLEDKANKK--VRTLSGGMKQRLSIALALLH--DPELLILDEPTSGLDPESRREIW-ELLRELAKEG 186 (293)
T ss_pred HHHHHHHHHHHHcCCchhhCcc--hhhcCHHHHHHHHHHHHHhc--CCCEEEECCCCcCCCHHHHHHHH-HHHHHHHhCC
Confidence 56799999999843222 355777654 899999999 999999999999 9999999998 9999998876
Q ss_pred -CeEEEEEecccccccchhHHhhhhH
Q 025844 131 -FNVCAVYLLDSQFITDVTKFISGCM 155 (247)
Q Consensus 131 -~~ii~v~l~d~~~~~d~~~~~s~~l 155 (247)
.+|+ +.+|.+.+...+|+.++
T Consensus 187 ~~tvl----issH~l~e~~~~~d~v~ 208 (293)
T COG1131 187 GVTIL----LSTHILEEAEELCDRVI 208 (293)
T ss_pred CcEEE----EeCCcHHHHHHhCCEEE
Confidence 6774 45799988888877443
No 10
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.95 E-value=9.9e-28 Score=197.80 Aligned_cols=154 Identities=19% Similarity=0.232 Sum_probs=127.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------------CCCCCCcccChhhhHh-----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDYPVAMDIRELIS----------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------------~~~~y~~~~~v~e~i~----------- 58 (247)
-+++|+|||||||||++|+|++++.|++|.|+++|.|... ...+++..+|++|++.
T Consensus 29 ei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~ 108 (245)
T COG4555 29 EITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRK 108 (245)
T ss_pred eEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhh
Confidence 4789999999999999999999999999999999987643 2233455789999885
Q ss_pred -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 025844 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (247)
Q Consensus 59 -----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (247)
+++++++++|....++.+. .++.|++ +.||||+++ +|++++||||++ ||..+++.+. +++.+++++|
T Consensus 109 ~~kari~~l~k~l~l~~~~~rRv~--~~S~G~kqkV~iARAlvh--~P~i~vlDEP~sGLDi~~~r~~~-dfi~q~k~eg 183 (245)
T COG4555 109 EIKARIAELSKRLQLLEYLDRRVG--EFSTGMKQKVAIARALVH--DPSILVLDEPTSGLDIRTRRKFH-DFIKQLKNEG 183 (245)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHh--hhchhhHHHHHHHHHHhc--CCCeEEEcCCCCCccHHHHHHHH-HHHHHhhcCC
Confidence 6788999999887655533 4666654 999999999 999999999999 9999999888 9999998888
Q ss_pred CeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccc
Q 025844 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180 (247)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~ 180 (247)
..++ +++|.+.+.+.+|+ ++-++-|...+-.
T Consensus 184 r~vi----FSSH~m~EvealCD---------------rvivlh~Gevv~~ 214 (245)
T COG4555 184 RAVI----FSSHIMQEVEALCD---------------RVIVLHKGEVVLE 214 (245)
T ss_pred cEEE----EecccHHHHHHhhh---------------eEEEEecCcEEEc
Confidence 8874 56899999999998 5556666666543
No 11
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.95 E-value=2.4e-27 Score=201.71 Aligned_cols=142 Identities=21% Similarity=0.266 Sum_probs=118.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------------CCCCCCcccChhhhHh----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELIS---------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------------~~~~y~~~~~v~e~i~---------- 58 (247)
-+++++||+||||||++|+|.++++|++|+|+++|.+... |.++.+|.+||.+|+.
T Consensus 28 ef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k 107 (309)
T COG1125 28 EFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDK 107 (309)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCH
Confidence 3578999999999999999999999999999999988754 4455578999999986
Q ss_pred ------HHHHHHHcCCCCC-CchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844 59 ------LEDVMEELGLGPN-GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (247)
Q Consensus 59 ------~~~~l~~~~L~~~-~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (247)
++|.|+.+||.|. -..+|+ +.+++|+ |+.+||||+. +|+++++|||++ |||.++.++. +.+.++++
T Consensus 108 ~~i~~r~~ELl~lvgL~p~~~~~RyP-~eLSGGQQQRVGv~RALAa--dP~ilLMDEPFgALDpI~R~~lQ-~e~~~lq~ 183 (309)
T COG1125 108 ERIKKRADELLDLVGLDPSEYADRYP-HELSGGQQQRVGVARALAA--DPPILLMDEPFGALDPITRKQLQ-EEIKELQK 183 (309)
T ss_pred HHHHHHHHHHHHHhCCCHHHHhhcCc-hhcCcchhhHHHHHHHHhc--CCCeEeecCCccccChhhHHHHH-HHHHHHHH
Confidence 7899999999984 334444 4566654 4899999999 999999999998 9999999987 77777765
Q ss_pred -CCCeEEEEEecccccccchhHHhh
Q 025844 129 -RNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 129 -~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
.++|+++| +|.+.+..++.+
T Consensus 184 ~l~kTivfV----THDidEA~kLad 204 (309)
T COG1125 184 ELGKTIVFV----THDIDEALKLAD 204 (309)
T ss_pred HhCCEEEEE----ecCHHHHHhhhc
Confidence 58999888 477777777665
No 12
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=8.7e-28 Score=204.56 Aligned_cols=142 Identities=13% Similarity=0.159 Sum_probs=115.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---------CCCCCCcccChhhhHh---------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDYPVAMDIRELIS--------------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---------~~~~y~~~~~v~e~i~--------------- 58 (247)
-+++|+||+|||||||+|+++|+.+|++|+|.+.|..+.. |+....|..|+.+|+.
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~ 109 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARE 109 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchHhHHH
Confidence 3689999999999999999999999999999999976521 3444467788999885
Q ss_pred -HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEE
Q 025844 59 -LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC 134 (247)
Q Consensus 59 -~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii 134 (247)
++++++.+||....+... ..+++|++ ++||||++. +|++|++|||++ ||..++..+...+++-+++.+.|++
T Consensus 110 ~a~~~L~~VgL~~~~~~~P--~qLSGGMrQRVaiARAL~~--~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~Tvl 185 (248)
T COG1116 110 RAKELLELVGLAGFEDKYP--HQLSGGMRQRVAIARALAT--RPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVL 185 (248)
T ss_pred HHHHHHHHcCCcchhhcCc--cccChHHHHHHHHHHHHhc--CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEE
Confidence 788999999998876654 35777765 999999999 999999999998 9999999998566666667788998
Q ss_pred EEEecccccccchhHHhh
Q 025844 135 AVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 135 ~v~l~d~~~~~d~~~~~s 152 (247)
+| +|.+.+.....+
T Consensus 186 lV----THdi~EAv~Lsd 199 (248)
T COG1116 186 LV----THDVDEAVYLAD 199 (248)
T ss_pred EE----eCCHHHHHhhhC
Confidence 77 366655544434
No 13
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.94 E-value=1.7e-26 Score=195.05 Aligned_cols=142 Identities=17% Similarity=0.192 Sum_probs=114.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------------CCCCCCcccChhhhHh-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------------ENFDYPVAMDIRELIS------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------------~~~~y~~~~~v~e~i~------- 58 (247)
-+.+|+||+|||||||+|.|.|+++|++|+|++.|.+... |.-+.+.++||+||+.
T Consensus 35 ei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~ 114 (263)
T COG1127 35 EILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHT 114 (263)
T ss_pred cEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhc
Confidence 4789999999999999999999999999999999988632 2222345789999986
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
+..-++.+||.+.....++ ..+++|++ ++||||++. +|+++++||||+ |||.+...+- +++++
T Consensus 115 ~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-sELSGGM~KRvaLARAial--dPell~~DEPtsGLDPI~a~~~~-~LI~~ 190 (263)
T COG1127 115 KLPESLIRELVLMKLELVGLRGAAADLYP-SELSGGMRKRVALARAIAL--DPELLFLDEPTSGLDPISAGVID-ELIRE 190 (263)
T ss_pred cCCHHHHHHHHHHHHHhcCCChhhhhhCc-hhhcchHHHHHHHHHHHhc--CCCEEEecCCCCCCCcchHHHHH-HHHHH
Confidence 4566778999988555555 36788875 999999999 999999999999 9999998887 99999
Q ss_pred HHh-CCCeEEEEEecccccccchhHHhh
Q 025844 126 LKS-RNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 126 l~~-~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
|++ .|.|+++|. |.+......++
T Consensus 191 L~~~lg~T~i~VT----HDl~s~~~i~D 214 (263)
T COG1127 191 LNDALGLTVIMVT----HDLDSLLTIAD 214 (263)
T ss_pred HHHhhCCEEEEEE----CChHHHHhhhc
Confidence 976 488887773 55444444444
No 14
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.94 E-value=2.3e-26 Score=205.27 Aligned_cols=146 Identities=17% Similarity=0.217 Sum_probs=115.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCC-------CCcccChhhhHh-----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFD-------YPVAMDIRELIS----------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~-------y~~~~~v~e~i~----------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|+++|.++.. +.++ +++.+|++|++.
T Consensus 34 ei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 113 (306)
T PRK13537 34 ECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAA 113 (306)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHH
Confidence 4789999999999999999999999999999999987632 2233 344678888764
Q ss_pred -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 025844 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (247)
Q Consensus 59 -----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (247)
++++++.+++.+..... ...+++|++ +.||++++. +|+++||||||+ ||+.+++.+. +++++++++|
T Consensus 114 ~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~aL~~--~P~lllLDEPt~gLD~~~~~~l~-~~l~~l~~~g 188 (306)
T PRK13537 114 AARALVPPLLEFAKLENKADAK--VGELSGGMKRRLTLARALVN--DPDVLVLDEPTTGLDPQARHLMW-ERLRSLLARG 188 (306)
T ss_pred HHHHHHHHHHHHcCCchHhcCc--hhhCCHHHHHHHHHHHHHhC--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCC
Confidence 34677888887644333 345776654 899999999 999999999999 9999999998 8999997778
Q ss_pred CeEEEEEecccccccchhHHhhhhHHH
Q 025844 131 FNVCAVYLLDSQFITDVTKFISGCMAS 157 (247)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s~~l~~ 157 (247)
.+|+++ +|.+.+...+|+.++..
T Consensus 189 ~till~----sH~l~e~~~~~d~i~il 211 (306)
T PRK13537 189 KTILLT----THFMEEAERLCDRLCVI 211 (306)
T ss_pred CEEEEE----CCCHHHHHHhCCEEEEE
Confidence 888554 68888888888755443
No 15
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=6.5e-27 Score=203.92 Aligned_cols=161 Identities=14% Similarity=0.166 Sum_probs=126.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCC-------CCcccChhhhHh-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFD-------YPVAMDIRELIS------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~-------y~~~~~v~e~i~------- 58 (247)
-+.||+|++|||||||+|++.++.+|++|+|.++|.|... +.++ .....||.+++.
T Consensus 33 eI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag 112 (339)
T COG1135 33 EIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG 112 (339)
T ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC
Confidence 3689999999999999999999999999999999977632 2333 333568888875
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (247)
Q Consensus 59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (247)
+.++++.+||....+..++ .+++|+ +++|||||+. +|++|+.||||+ |||.+.+.++ ++++.+
T Consensus 113 ~~k~ei~~RV~elLelVgL~dk~~~yP~--qLSGGQKQRVaIARALa~--~P~iLL~DEaTSALDP~TT~sIL-~LL~~I 187 (339)
T COG1135 113 VPKAEIKQRVAELLELVGLSDKADRYPA--QLSGGQKQRVAIARALAN--NPKILLCDEATSALDPETTQSIL-ELLKDI 187 (339)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhccCch--hcCcchhhHHHHHHHHhc--CCCEEEecCccccCChHHHHHHH-HHHHHH
Confidence 7899999999976554433 466654 5999999999 999999999999 9999999999 999999
Q ss_pred Hh-CCCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeee
Q 025844 127 KS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 172 (247)
Q Consensus 127 ~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vl 172 (247)
++ .|.||++| +|.|.-...+|+.+.....+.+.-..+..+||
T Consensus 188 n~~lglTIvlI----THEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 188 NRELGLTIVLI----THEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHcCCEEEEE----echHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 86 59999877 47777777888855555444444444444444
No 16
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=2.3e-26 Score=194.99 Aligned_cols=131 Identities=23% Similarity=0.231 Sum_probs=107.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------------------CCCCCCcccChhhhHh------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------------ENFDYPVAMDIRELIS------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------------------~~~~y~~~~~v~e~i~------ 58 (247)
-+++|+||+|||||||++++.|+.+|++|.|++.|.|... |.+..-+++|+.||+.
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~ 111 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIA 111 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHc
Confidence 3689999999999999999999999999999999976532 3333356789999986
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
++++++.+|+++.....++ ..+++|+ |++||||++. +|++++.||||. ||..+...++ +++++
T Consensus 112 ~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-~eLSGGqqQRVAIARAL~~--~P~iilADEPTgnLD~~t~~~V~-~ll~~ 187 (226)
T COG1136 112 GKSAGRRKRAAEELLEVLGLEDRLLKKKP-SELSGGQQQRVAIARALIN--NPKIILADEPTGNLDSKTAKEVL-ELLRE 187 (226)
T ss_pred CCChhHHHHHHHHHHHhcCChhhhccCCc-hhcCHHHHHHHHHHHHHhc--CCCeEEeeCccccCChHHHHHHH-HHHHH
Confidence 4567778899866543333 3566654 5999999999 999999999998 9999999999 99999
Q ss_pred HHhC-CCeEEEEE
Q 025844 126 LKSR-NFNVCAVY 137 (247)
Q Consensus 126 l~~~-~~~ii~v~ 137 (247)
++++ |.++++|.
T Consensus 188 ~~~~~g~tii~VT 200 (226)
T COG1136 188 LNKERGKTIIMVT 200 (226)
T ss_pred HHHhcCCEEEEEc
Confidence 9764 88888773
No 17
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.94 E-value=7.1e-26 Score=201.66 Aligned_cols=145 Identities=17% Similarity=0.252 Sum_probs=113.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC-------CcccChhhhHh-----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y-------~~~~~v~e~i~----------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++.+++++++.
T Consensus 20 e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 99 (302)
T TIGR01188 20 EVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKD 99 (302)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCCHH
Confidence 4789999999999999999999999999999999976521 12333 34567777764
Q ss_pred -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 025844 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (247)
Q Consensus 59 -----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (247)
++++++.+++.+..... ...+++|++ +.||++++. +|+++||||||+ ||+.+++.+. +++++++++|
T Consensus 100 ~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~~~~~g 174 (302)
T TIGR01188 100 EAEERAEELLELFELGEAADRP--VGTYSGGMRRRLDIAASLIH--QPDVLFLDEPTTGLDPRTRRAIW-DYIRALKEEG 174 (302)
T ss_pred HHHHHHHHHHHHcCChhHhCCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCC
Confidence 45678889987643333 345776654 899999999 999999999999 9999999998 8899987678
Q ss_pred CeEEEEEecccccccchhHHhhhhHH
Q 025844 131 FNVCAVYLLDSQFITDVTKFISGCMA 156 (247)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s~~l~ 156 (247)
.+++++ +|.+.+...+|+.++.
T Consensus 175 ~tvi~~----sH~~~~~~~~~d~v~~ 196 (302)
T TIGR01188 175 VTILLT----THYMEEADKLCDRIAI 196 (302)
T ss_pred CEEEEE----CCCHHHHHHhCCEEEE
Confidence 888655 5777777777764433
No 18
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.94 E-value=9.2e-26 Score=203.94 Aligned_cols=146 Identities=16% Similarity=0.252 Sum_probs=115.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC-------CcccChhhhHh-----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y-------~~~~~v~e~i~----------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++.+++.+++.
T Consensus 68 ei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 147 (340)
T PRK13536 68 ECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTR 147 (340)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHH
Confidence 4789999999999999999999999999999999987532 22333 34567777764
Q ss_pred -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 025844 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (247)
Q Consensus 59 -----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (247)
++++++.+++.+..... ...+++|++ +.||++++. +|+++||||||+ ||+.+++.+. ++++++++.|
T Consensus 148 ~~~~~~~~ll~~~~L~~~~~~~--~~~LS~G~kqrv~lA~aL~~--~P~lLiLDEPt~gLD~~~r~~l~-~~l~~l~~~g 222 (340)
T PRK13536 148 EIEAVIPSLLEFARLESKADAR--VSDLSGGMKRRLTLARALIN--DPQLLILDEPTTGLDPHARHLIW-ERLRSLLARG 222 (340)
T ss_pred HHHHHHHHHHHHcCCchhhCCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCC
Confidence 34677888887644333 345776654 899999999 999999999999 9999999998 9999987778
Q ss_pred CeEEEEEecccccccchhHHhhhhHHH
Q 025844 131 FNVCAVYLLDSQFITDVTKFISGCMAS 157 (247)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s~~l~~ 157 (247)
.+|+++ +|.+.+...+|+.+++.
T Consensus 223 ~tilis----SH~l~e~~~~~d~i~il 245 (340)
T PRK13536 223 KTILLT----THFMEEAERLCDRLCVL 245 (340)
T ss_pred CEEEEE----CCCHHHHHHhCCEEEEE
Confidence 888544 68888888888755443
No 19
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.94 E-value=5.3e-26 Score=204.22 Aligned_cols=153 Identities=14% Similarity=0.166 Sum_probs=120.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------------CCCCCCcccChhhhHh-------------
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------- 58 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------------~~~~y~~~~~v~e~i~------------- 58 (247)
+++++|||||||||++|+|+|+.+|++|+|.++|.+... |+.+.+|.+||.+||.
T Consensus 33 f~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~ 112 (352)
T COG3842 33 FVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAE 112 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHH
Confidence 578999999999999999999999999999999987532 4445588999999975
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH-hCC
Q 025844 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRN 130 (247)
Q Consensus 59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~ 130 (247)
+.++++.++|.+.+.+... .+++|+ +++|||||+. +|++|+||||.+ ||...+.++. .-++++. +.|
T Consensus 113 i~~rv~e~L~lV~L~~~~~R~p~--qLSGGQqQRVALARAL~~--~P~vLLLDEPlSaLD~kLR~~mr-~Elk~lq~~~g 187 (352)
T COG3842 113 IKARVEEALELVGLEGFADRKPH--QLSGGQQQRVALARALVP--EPKVLLLDEPLSALDAKLREQMR-KELKELQRELG 187 (352)
T ss_pred HHHHHHHHHHHcCchhhhhhChh--hhChHHHHHHHHHHHhhc--CcchhhhcCcccchhHHHHHHHH-HHHHHHHHhcC
Confidence 7889999999998777644 566654 5999999999 999999999999 9999998887 5555554 568
Q ss_pred CeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccc
Q 025844 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180 (247)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~ 180 (247)
.|.++|. |.-.+.....+ .|.|+++.-+...
T Consensus 188 iT~i~VT----HDqeEAl~msD---------------rI~Vm~~G~I~Q~ 218 (352)
T COG3842 188 ITFVYVT----HDQEEALAMSD---------------RIAVMNDGRIEQV 218 (352)
T ss_pred CeEEEEE----CCHHHHhhhcc---------------ceEEccCCceeec
Confidence 8888773 55444444333 4556666655443
No 20
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.93 E-value=3.7e-26 Score=193.49 Aligned_cols=148 Identities=18% Similarity=0.198 Sum_probs=117.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCC--------C------CCC---CcccChhhhHh-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE--------N------FDY---PVAMDIRELIS------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~--------~------~~y---~~~~~v~e~i~------- 58 (247)
-+++|+|++|||||||+++++|+.+|+.|+|.++|...... . -+| .|..+|++.+.
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~ 113 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHG 113 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccCC
Confidence 47899999999999999999999999999999999643221 0 112 45567777664
Q ss_pred -------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (247)
Q Consensus 59 -------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (247)
+.++++.+||.+.-..+++. .+++|+ |++|||||.. +|++||+||||+ ||...+.+++ +++.++++
T Consensus 114 ~~~~~~~i~~~L~~VgL~~~~l~R~P~-eLSGGQ~QRiaIARAL~~--~PklLIlDEptSaLD~siQa~Il-nlL~~l~~ 189 (252)
T COG1124 114 LSKSQQRIAELLDQVGLPPSFLDRRPH-ELSGGQRQRIAIARALIP--EPKLLILDEPTSALDVSVQAQIL-NLLLELKK 189 (252)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHhcCch-hcChhHHHHHHHHHHhcc--CCCEEEecCchhhhcHHHHHHHH-HHHHHHHH
Confidence 68899999999877666664 577775 4999999999 999999999999 9999999999 99999976
Q ss_pred -CCCeEEEEEecccccccchhHHhhhhHHHh
Q 025844 129 -RNFNVCAVYLLDSQFITDVTKFISGCMASL 158 (247)
Q Consensus 129 -~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~ 158 (247)
.+.+.++| +|.+.-...+|+++.+..
T Consensus 190 ~~~lt~l~I----sHdl~~v~~~cdRi~Vm~ 216 (252)
T COG1124 190 ERGLTYLFI----SHDLALVEHMCDRIAVMD 216 (252)
T ss_pred hcCceEEEE----eCcHHHHHHHhhheeeee
Confidence 47787766 466666666766544433
No 21
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.93 E-value=4.9e-26 Score=203.43 Aligned_cols=129 Identities=21% Similarity=0.190 Sum_probs=108.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------------CCCCCCcccChhhhHh-------------
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------- 58 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------------~~~~y~~~~~v~e~i~------------- 58 (247)
+++++||||||||||+|+|+|+.+|++|+|.++|.+... |+.+.+|.+||++|+.
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei 110 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEI 110 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHH
Confidence 578999999999999999999999999999999976532 5555688999999986
Q ss_pred ---HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCC
Q 025844 59 ---LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNF 131 (247)
Q Consensus 59 ---~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~ 131 (247)
++++.+.+++.+...+... .+++|+ ++++|||+.. +|++++||||.+ ||...+..+. .-++++++ .+.
T Consensus 111 ~~rV~eva~~L~l~~lL~r~P~--~LSGGQrQRVAlaRAlVr--~P~v~L~DEPlSnLDa~lR~~mr-~ei~~lh~~l~~ 185 (338)
T COG3839 111 DKRVKEVAKLLGLEHLLNRKPL--QLSGGQRQRVALARALVR--KPKVFLLDEPLSNLDAKLRVLMR-SEIKKLHERLGT 185 (338)
T ss_pred HHHHHHHHHHcCChhHHhcCcc--cCChhhHHHHHHHHHHhc--CCCEEEecCchhHhhHHHHHHHH-HHHHHHHHhcCC
Confidence 7789999999987766643 466665 4999999999 999999999999 9999988877 77777765 477
Q ss_pred eEEEEE
Q 025844 132 NVCAVY 137 (247)
Q Consensus 132 ~ii~v~ 137 (247)
|+|.|.
T Consensus 186 T~IYVT 191 (338)
T COG3839 186 TTIYVT 191 (338)
T ss_pred cEEEEc
Confidence 887773
No 22
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.93 E-value=1.3e-25 Score=190.34 Aligned_cols=141 Identities=14% Similarity=0.213 Sum_probs=106.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCC-------CcccChhhhHh-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y-------~~~~~v~e~i~------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.++| .+..++.+++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 109 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG 109 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC
Confidence 4689999999999999999999999999999999876421 22333 23457777653
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (247)
Q Consensus 59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (247)
+.++++.+++.+..... ...+++|++ ++||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 110 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~ 184 (216)
T TIGR00960 110 VPPRDANERVSAALEKVGLEGKAHAL--PMQLSGGEQQRVAIARAIVH--KPPLLLADEPTGNLDPELSRDIM-RLFEEF 184 (216)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCcCCHHHHHHHH-HHHHHH
Confidence 45678888887644333 245666643 899999999 999999999999 9999999998 888888
Q ss_pred HhCCCeEEEEEecccccccchhHHhh
Q 025844 127 KSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++.+.+++++ +|.......+++
T Consensus 185 ~~~~~tii~v----sH~~~~~~~~~d 206 (216)
T TIGR00960 185 NRRGTTVLVA----THDINLVETYRH 206 (216)
T ss_pred HHCCCEEEEE----eCCHHHHHHhCC
Confidence 7667787666 355444444444
No 23
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.93 E-value=1.9e-25 Score=182.71 Aligned_cols=131 Identities=15% Similarity=0.212 Sum_probs=108.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---CCCCC--------------CcccChhhhHh-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---ENFDY--------------PVAMDIRELIS------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---~~~~y--------------~~~~~v~e~i~------- 58 (247)
-++.++||+|||||||+|.|++..+|+.|+|+++|.|... .++|| -++.|+.||+.
T Consensus 29 ef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G 108 (223)
T COG2884 29 EFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIG 108 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhccC
Confidence 3578999999999999999999999999999999988743 23332 23568999986
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (247)
Q Consensus 59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (247)
+.++++.+||..........-+..++++++||||+.. +|++||.||||. |||.....++ ++++++++
T Consensus 109 ~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~--~P~vLlADEPTGNLDp~~s~~im-~lfeeinr 185 (223)
T COG2884 109 KPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVN--QPAVLLADEPTGNLDPDLSWEIM-RLFEEINR 185 (223)
T ss_pred CCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHcc--CCCeEeecCCCCCCChHHHHHHH-HHHHHHhh
Confidence 7889999999876544433222223466999999999 999999999997 9999999999 99999998
Q ss_pred CCCeEEEE
Q 025844 129 RNFNVCAV 136 (247)
Q Consensus 129 ~~~~ii~v 136 (247)
.|.||++.
T Consensus 186 ~GtTVl~A 193 (223)
T COG2884 186 LGTTVLMA 193 (223)
T ss_pred cCcEEEEE
Confidence 99998766
No 24
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.93 E-value=9.3e-26 Score=203.97 Aligned_cols=149 Identities=14% Similarity=0.192 Sum_probs=116.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCC-------CcccChhhhHh-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y-------~~~~~v~e~i~------- 58 (247)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++| .+..|+++++.
T Consensus 32 ei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~ 111 (343)
T TIGR02314 32 QIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN 111 (343)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcC
Confidence 3689999999999999999999999999999999976531 23333 33467877764
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (247)
Q Consensus 59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (247)
+.++++.+|+.+..... ...+++|+ +++||||++. +|++||+||||+ ||+.++..++ ++++++
T Consensus 112 ~~~~~~~~~v~e~l~~vgL~~~~~~~--~~~LSgGqkQRV~IARAL~~--~P~iLLlDEPts~LD~~t~~~i~-~lL~~l 186 (343)
T TIGR02314 112 TPKDEIKRKVTELLALVGLGDKHDSY--PSNLSGGQKQRVAIARALAS--NPKVLLCDEATSALDPATTQSIL-ELLKEI 186 (343)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHH
Confidence 45788889997654433 24566665 4999999999 999999999999 9999999999 999998
Q ss_pred HhC-CCeEEEEEecccccccchhHHhhhhHHHhHH
Q 025844 127 KSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (247)
Q Consensus 127 ~~~-~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (247)
+++ |.+++++ +|.+.....+|+.+++...+
T Consensus 187 ~~~~g~tiili----TH~~~~v~~~~d~v~vl~~G 217 (343)
T TIGR02314 187 NRRLGLTILLI----THEMDVVKRICDCVAVISNG 217 (343)
T ss_pred HHhcCCEEEEE----eCCHHHHHHhCCEEEEEECC
Confidence 764 8888766 47777667777755444333
No 25
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=1.7e-25 Score=189.38 Aligned_cols=157 Identities=13% Similarity=0.138 Sum_probs=127.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---CCCCC-------CcccChhhhHh--------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---ENFDY-------PVAMDIRELIS-------------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---~~~~y-------~~~~~v~e~i~-------------- 58 (247)
-+.+++|||||||||.+|+|.|+++|++|+|.|+|.+... ..++| ++.+++.|.+.
T Consensus 29 ~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~ 108 (300)
T COG4152 29 EIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQ 108 (300)
T ss_pred eEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHH
Confidence 4689999999999999999999999999999999977643 34555 46789988774
Q ss_pred --HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeE
Q 025844 59 --LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (247)
Q Consensus 59 --~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~i 133 (247)
+..||+++++..+.... .+.+++|. .+.+..++++ +|+++|||||++ |||.+.+.+- +.+.+++.+|.+|
T Consensus 109 ~~~~~wLer~~i~~~~~~k--Ik~LSKGnqQKIQfisaviH--ePeLlILDEPFSGLDPVN~elLk-~~I~~lk~~GatI 183 (300)
T COG4152 109 KKLQAWLERLEIVGKKTKK--IKELSKGNQQKIQFISAVIH--EPELLILDEPFSGLDPVNVELLK-DAIFELKEEGATI 183 (300)
T ss_pred HHHHHHHHhccccccccch--HHHhhhhhhHHHHHHHHHhc--CCCEEEecCCccCCChhhHHHHH-HHHHHHHhcCCEE
Confidence 68899999998776555 45677653 3566668888 999999999999 9999987765 8999998899999
Q ss_pred EEEEecccccccchhHHhhhhHHHhHHHhhccCCe
Q 025844 134 CAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (247)
Q Consensus 134 i~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~ 168 (247)
+ +++|.|.+.+.+|+.+++...+...+..+.
T Consensus 184 i----fSsH~Me~vEeLCD~llmL~kG~~V~~G~v 214 (300)
T COG4152 184 I----FSSHRMEHVEELCDRLLMLKKGQTVLYGTV 214 (300)
T ss_pred E----EecchHHHHHHHhhhhheecCCceEEeccH
Confidence 4 568999999999998877665554444443
No 26
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=6.9e-25 Score=199.39 Aligned_cols=141 Identities=16% Similarity=0.164 Sum_probs=111.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------------CCCCCCcccChhhhHh------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------------~~~~y~~~~~v~e~i~------------ 58 (247)
-+++|+||||||||||+++|+|+.+|++|+|.++|.+... ++..+++.+|+++++.
T Consensus 31 e~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~ 110 (356)
T PRK11650 31 EFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAE 110 (356)
T ss_pred CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHH
Confidence 3689999999999999999999999999999999976531 2222345678888874
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-C
Q 025844 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N 130 (247)
Q Consensus 59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~ 130 (247)
++++++.+++.+...... ..+++|+ +++|||+++. +|+++|||||++ ||+.++..+. +.++++.++ |
T Consensus 111 ~~~~~~~~l~~~gL~~~~~~~~--~~LSgGq~QRvalARAL~~--~P~llLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g 185 (356)
T PRK11650 111 IEERVAEAARILELEPLLDRKP--RELSGGQRQRVAMGRAIVR--EPAVFLFDEPLSNLDAKLRVQMR-LEIQRLHRRLK 185 (356)
T ss_pred HHHHHHHHHHHcCChhHhhCCh--hhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 457888899987654442 4566665 4999999999 999999999999 9999999988 888888664 8
Q ss_pred CeEEEEEecccccccchhHHhh
Q 025844 131 FNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s 152 (247)
.++++| +|...+...+++
T Consensus 186 ~tii~v----THd~~ea~~l~D 203 (356)
T PRK11650 186 TTSLYV----THDQVEAMTLAD 203 (356)
T ss_pred CEEEEE----eCCHHHHHHhCC
Confidence 888766 466665556555
No 27
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.8e-25 Score=188.41 Aligned_cols=157 Identities=15% Similarity=0.206 Sum_probs=124.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------------CCCCCCcccChhhhHh-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------------ENFDYPVAMDIRELIS------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------------~~~~y~~~~~v~e~i~------- 58 (247)
-.++|+||+|||||||+|+|.|+..|++|+|.++|.++.. +.+...+.+++.+++.
T Consensus 31 E~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~ 110 (258)
T COG3638 31 EMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYT 110 (258)
T ss_pred cEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccc
Confidence 3689999999999999999999999999999999977632 3333345667777763
Q ss_pred -----------------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 025844 59 -----------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (247)
Q Consensus 59 -----------------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (247)
+-+.++++|+.+....+ .+.+++|+ |++|||+|++ +|++++.|||++ |||.+.+.+
T Consensus 111 s~~~slfglfsk~dk~~Al~aLervgi~~~A~qr--a~~LSGGQQQRVaIARaL~Q--~pkiILADEPvasLDp~~a~~V 186 (258)
T COG3638 111 STWRSLFGLFSKEDKAQALDALERVGILDKAYQR--ASTLSGGQQQRVAIARALVQ--QPKIILADEPVASLDPESAKKV 186 (258)
T ss_pred hHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH--hccCCcchhHHHHHHHHHhc--CCCEEecCCcccccChhhHHHH
Confidence 56788899998776555 35677764 5999999999 999999999999 999999999
Q ss_pred HHHHHHHHHh-CCCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCe
Q 025844 119 LRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (247)
Q Consensus 119 ~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~ 168 (247)
| ++++++++ .|.|+++. .|.+.-...||++++-...+.+.++.|.
T Consensus 187 m-~~l~~in~~~g~Tvi~n----LH~vdlA~~Y~~Riigl~~G~ivfDg~~ 232 (258)
T COG3638 187 M-DILKDINQEDGITVIVN----LHQVDLAKKYADRIIGLKAGRIVFDGPA 232 (258)
T ss_pred H-HHHHHHHHHcCCEEEEE----echHHHHHHHHhhheEecCCcEEEeCCh
Confidence 9 99999875 57887544 3666666788887777666666665555
No 28
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.93 E-value=8.3e-25 Score=194.87 Aligned_cols=145 Identities=17% Similarity=0.246 Sum_probs=111.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC-------CcccChhhhHh-----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y-------~~~~~v~e~i~----------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 31 e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 110 (303)
T TIGR01288 31 ECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTR 110 (303)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHH
Confidence 4789999999999999999999999999999999876521 22333 33567777763
Q ss_pred -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 025844 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (247)
Q Consensus 59 -----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (247)
++++++.+++.+..... ...+++|++ +.||++++. +|+++||||||+ ||+.++..+. +++++++++|
T Consensus 111 ~~~~~~~~ll~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~~~~~g 185 (303)
T TIGR01288 111 EIEAVIPSLLEFARLESKADVR--VALLSGGMKRRLTLARALIN--DPQLLILDEPTTGLDPHARHLIW-ERLRSLLARG 185 (303)
T ss_pred HHHHHHHHHHHHCCChhHhcCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCC
Confidence 23567778886543333 345776654 899999999 999999999999 9999999998 8899987778
Q ss_pred CeEEEEEecccccccchhHHhhhhHH
Q 025844 131 FNVCAVYLLDSQFITDVTKFISGCMA 156 (247)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s~~l~ 156 (247)
.+++++ +|...+...+++.++.
T Consensus 186 ~til~~----sH~~~~~~~~~d~i~~ 207 (303)
T TIGR01288 186 KTILLT----THFMEEAERLCDRLCV 207 (303)
T ss_pred CEEEEE----CCCHHHHHHhCCEEEE
Confidence 888655 5776666666664433
No 29
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=4.4e-25 Score=186.72 Aligned_cols=141 Identities=16% Similarity=0.161 Sum_probs=105.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----CCCCC-------CcccChhhhHh------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----~~~~y-------~~~~~v~e~i~------------ 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~ 106 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAE 106 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHH
Confidence 4689999999999999999999999999999999876521 22333 22456766653
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 025844 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (247)
Q Consensus 59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (247)
+.++++.+++.+..... ...+++|++ +.||++++. +|+++|+||||+ ||+.++..+. ++++++++ .|
T Consensus 107 ~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrl~la~al~~--~p~~lllDEPt~~LD~~~~~~l~-~~l~~~~~~~~ 181 (213)
T cd03259 107 IRARVRELLELVGLEGLLNRY--PHELSGGQQQRVALARALAR--EPSLLLLDEPLSALDAKLREELR-EELKELQRELG 181 (213)
T ss_pred HHHHHHHHHHHcCChhhhhcC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcC
Confidence 34677888886543332 245666654 899999999 999999999999 9999999998 88888865 47
Q ss_pred CeEEEEEecccccccchhHHhh
Q 025844 131 FNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s 152 (247)
.+++++ +|...+...+++
T Consensus 182 ~tii~~----sH~~~~~~~~~d 199 (213)
T cd03259 182 ITTIYV----THDQEEALALAD 199 (213)
T ss_pred CEEEEE----ecCHHHHHHhcC
Confidence 777665 355444444444
No 30
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=2.4e-25 Score=191.07 Aligned_cols=141 Identities=19% Similarity=0.237 Sum_probs=106.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCC-------CcccChhhhHh-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y-------~~~~~v~e~i~------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++.+++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 106 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT 106 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc
Confidence 3689999999999999999999999999999999865421 12333 23457776653
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
+.++++.+++.+..... ...+++|++ +.||++++. +|+++|+||||+ ||+.++..++ +++++
T Consensus 107 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~ia~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~ 181 (235)
T cd03261 107 RLSEEEIREIVLEKLEAVGLRGAEDLY--PAELSGGMKKRVALARALAL--DPELLLYDEPTAGLDPIASGVID-DLIRS 181 (235)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHH-HHHHH
Confidence 34567888886643333 345676654 899999999 999999999999 9999999998 88888
Q ss_pred HHh-CCCeEEEEEecccccccchhHHhh
Q 025844 126 LKS-RNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 126 l~~-~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+++ .|.+++++ +|...+...+++
T Consensus 182 ~~~~~~~tvi~v----sH~~~~~~~~~d 205 (235)
T cd03261 182 LKKELGLTSIMV----THDLDTAFAIAD 205 (235)
T ss_pred HHHhcCcEEEEE----ecCHHHHHHhcC
Confidence 876 47787666 355554455554
No 31
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.92 E-value=1.6e-25 Score=182.11 Aligned_cols=143 Identities=19% Similarity=0.234 Sum_probs=115.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----CCC-------CCCcccChhhhHh------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENF-------DYPVAMDIRELIS------------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----~~~-------~y~~~~~v~e~i~------------ 58 (247)
-+++|+||+|||||||++.++|+..|.+|.|+++|.|... ..+ ..+..+||.+|+.
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~ 105 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAE 105 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcccccCHH
Confidence 4789999999999999999999999999999999987532 111 1233567777764
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 025844 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (247)
Q Consensus 59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (247)
++.++.++|+....++... .+++|+ ++++||++.. +.++++||||++ |||..+.++. .++.+++. ++
T Consensus 106 ~r~~v~~aa~~vGl~~~~~RLP~--~LSGGqRQRvALARclvR--~~PilLLDEPFsALdP~LR~eMl-~Lv~~l~~E~~ 180 (231)
T COG3840 106 QREKVEAAAAQVGLAGFLKRLPG--ELSGGQRQRVALARCLVR--EQPILLLDEPFSALDPALRAEML-ALVSQLCDERK 180 (231)
T ss_pred HHHHHHHHHHHhChhhHhhhCcc--ccCchHHHHHHHHHHHhc--cCCeEEecCchhhcCHHHHHHHH-HHHHHHHHhhC
Confidence 7889999999988766643 466654 4999999999 999999999999 9999999998 99999975 58
Q ss_pred CeEEEEEecccccccchhHHhhhh
Q 025844 131 FNVCAVYLLDSQFITDVTKFISGC 154 (247)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s~~ 154 (247)
.|+++| +|...|.....+++
T Consensus 181 ~TllmV----TH~~~Da~~ia~~~ 200 (231)
T COG3840 181 MTLLMV----THHPEDAARIADRV 200 (231)
T ss_pred CEEEEE----eCCHHHHHHhhhce
Confidence 899877 47777776665533
No 32
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.92 E-value=6.4e-25 Score=186.21 Aligned_cols=141 Identities=17% Similarity=0.265 Sum_probs=107.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC-------CcccChhhhHh-----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y-------~~~~~v~e~i~----------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.++| .+..++++++.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 111 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGD 111 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHH
Confidence 3689999999999999999999999999999999876431 12222 33457777663
Q ss_pred -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 025844 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (247)
Q Consensus 59 -----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (247)
+.++++.+++.+..... ...+++|++ ++||++++. +|+++|+||||+ ||+.++..+. ++++++++++
T Consensus 112 ~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~~ 186 (218)
T cd03266 112 ELTARLEELADRLGMEELLDRR--VGGFSTGMRQKVAIARALVH--DPPVLLLDEPTTGLDVMATRALR-EFIRQLRALG 186 (218)
T ss_pred HHHHHHHHHHHHcCCHHHHhhh--hhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCcCCCHHHHHHHH-HHHHHHHHCC
Confidence 45678888886543333 345666654 899999999 999999999999 9999999988 8888887667
Q ss_pred CeEEEEEecccccccchhHHhh
Q 025844 131 FNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s 152 (247)
.+++++ +|...+...+++
T Consensus 187 ~tii~~----tH~~~~~~~~~d 204 (218)
T cd03266 187 KCILFS----THIMQEVERLCD 204 (218)
T ss_pred CEEEEE----eCCHHHHHHhcC
Confidence 888666 355554445544
No 33
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.92 E-value=2.9e-25 Score=188.34 Aligned_cols=129 Identities=21% Similarity=0.275 Sum_probs=100.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhHh------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------~~~~y-------~~~~~v~e~i~------ 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 110 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA 110 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc
Confidence 4789999999999999999999999999999999875421 22333 23457766653
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
+.++++.+|+.+..... ...+++|++ ++||++++. +|+++||||||+ ||+.++..+. +++++
T Consensus 111 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~lllLDEP~~~LD~~~~~~l~-~~l~~ 185 (218)
T cd03255 111 GVPKKERRERAEELLERVGLGDRLNHY--PSELSGGQQQRVAIARALAN--DPKIILADEPTGNLDSETGKEVM-ELLRE 185 (218)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhhcC--hhhcCHHHHHHHHHHHHHcc--CCCEEEEcCCcccCCHHHHHHHH-HHHHH
Confidence 45677888887643332 245666654 899999999 999999999999 9999999998 88888
Q ss_pred HHh-CCCeEEEE
Q 025844 126 LKS-RNFNVCAV 136 (247)
Q Consensus 126 l~~-~~~~ii~v 136 (247)
+++ .+.+++++
T Consensus 186 ~~~~~~~tii~~ 197 (218)
T cd03255 186 LNKEAGTTIVVV 197 (218)
T ss_pred HHHhcCCeEEEE
Confidence 876 57787666
No 34
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.92 E-value=1.2e-24 Score=183.03 Aligned_cols=141 Identities=18% Similarity=0.180 Sum_probs=107.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----CCCCC-C-------cccChhhhHh------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDY-P-------VAMDIRELIS------------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----~~~~y-~-------~~~~v~e~i~------------ 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.++| + ...+++|++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~ 106 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQ 106 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcCccHHH
Confidence 4689999999999999999999999999999999976421 22333 1 1346777663
Q ss_pred HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEE
Q 025844 59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (247)
Q Consensus 59 ~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~ 135 (247)
+.++++.+++.+..... ...++.|++ ++||++++. +|+++|+||||+ ||+.++..+. +++++++++|.++++
T Consensus 107 ~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~ 181 (205)
T cd03226 107 AETVLKDLDLYALKERH--PLSLSGGQKQRLAIAAALLS--GKDLLIFDEPTSGLDYKNMERVG-ELIRELAAQGKAVIV 181 (205)
T ss_pred HHHHHHHcCCchhcCCC--chhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHCCCEEEE
Confidence 46778889997654333 245666654 899999999 999999999999 9999999988 888888766778766
Q ss_pred EEecccccccchhHHhh
Q 025844 136 VYLLDSQFITDVTKFIS 152 (247)
Q Consensus 136 v~l~d~~~~~d~~~~~s 152 (247)
+ +|...+...+++
T Consensus 182 ~----sH~~~~~~~~~d 194 (205)
T cd03226 182 I----THDYEFLAKVCD 194 (205)
T ss_pred E----eCCHHHHHHhCC
Confidence 6 355554444444
No 35
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=7.5e-25 Score=186.27 Aligned_cols=141 Identities=14% Similarity=0.250 Sum_probs=106.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC-------CcccChhhhHh-----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y-------~~~~~v~e~i~----------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.++| .+..++++++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~ 106 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGA 106 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCCHH
Confidence 4689999999999999999999999999999999865421 12222 33456666652
Q ss_pred -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-
Q 025844 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR- 129 (247)
Q Consensus 59 -----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~- 129 (247)
++++++.+++.+..... ...+++|++ +.||++++. +|+++|+||||+ ||+.++..+. ++++++.++
T Consensus 107 ~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qr~~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~ 181 (220)
T cd03265 107 ERRERIDELLDFVGLLEAADRL--VKTYSGGMRRRLEIARSLVH--RPEVLFLDEPTIGLDPQTRAHVW-EYIEKLKEEF 181 (220)
T ss_pred HHHHHHHHHHHHcCCHHHhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCccCCCHHHHHHHH-HHHHHHHHhc
Confidence 45678888887543322 345676654 899999999 999999999999 9999999988 888888765
Q ss_pred CCeEEEEEecccccccchhHHhh
Q 025844 130 NFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 130 ~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
|.+++++ +|...+...+++
T Consensus 182 ~~tvi~~----tH~~~~~~~~~d 200 (220)
T cd03265 182 GMTILLT----THYMEEAEQLCD 200 (220)
T ss_pred CCEEEEE----eCCHHHHHHhCC
Confidence 7787666 465555555554
No 36
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.92 E-value=7.1e-25 Score=185.43 Aligned_cols=141 Identities=18% Similarity=0.252 Sum_probs=106.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCC-------CcccChhhhHh-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y-------~~~~~v~e~i~------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.++| .+..++.+++.
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 108 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG 108 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC
Confidence 4789999999999999999999999999999999876531 22333 22356666653
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (247)
Q Consensus 59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (247)
+.++++.+++.+..... ...+++|++ ++||++++. +|+++||||||+ ||+.++..+. ++++++
T Consensus 109 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~ 183 (214)
T TIGR02673 109 KKEREIQRRVGAALRQVGLEHKADAF--PEQLSGGEQQRVAIARAIVN--SPPLLLADEPTGNLDPDLSERIL-DLLKRL 183 (214)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhC--CCCEEEEeCCcccCCHHHHHHHH-HHHHHH
Confidence 34677788886543222 245666653 899999999 999999999999 9999999998 888888
Q ss_pred HhCCCeEEEEEecccccccchhHHhh
Q 025844 127 KSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++.+++++ +|...+...+++
T Consensus 184 ~~~~~tii~~----tH~~~~~~~~~d 205 (214)
T TIGR02673 184 NKRGTTVIVA----THDLSLVDRVAH 205 (214)
T ss_pred HHcCCEEEEE----eCCHHHHHHhcC
Confidence 7667787666 355555545444
No 37
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.92 E-value=1.3e-24 Score=197.35 Aligned_cols=141 Identities=14% Similarity=0.163 Sum_probs=111.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------------CCCCCCcccChhhhHh------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------------~~~~y~~~~~v~e~i~------------ 58 (247)
-+++|+||||||||||+++|+|+.+|++|+|.++|.+... ++...+|.+|+++++.
T Consensus 31 e~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~ 110 (353)
T TIGR03265 31 EFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAE 110 (353)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHH
Confidence 3689999999999999999999999999999999976531 2223355678888875
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 025844 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (247)
Q Consensus 59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (247)
++++++.++|.+..... ...+++|+ +++|||+|+. +|+++|||||++ ||...+..+. +.++++.+ .+
T Consensus 111 ~~~~~~~~l~~l~L~~~~~~~--~~~LSgGq~QRvaLARaL~~--~P~llLLDEP~s~LD~~~r~~l~-~~L~~l~~~~~ 185 (353)
T TIGR03265 111 VAERVAELLDLVGLPGSERKY--PGQLSGGQQQRVALARALAT--SPGLLLLDEPLSALDARVREHLR-TEIRQLQRRLG 185 (353)
T ss_pred HHHHHHHHHHHcCCCchhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 56788899998765444 24566665 4999999999 999999999999 9999999988 88888765 48
Q ss_pred CeEEEEEecccccccchhHHhh
Q 025844 131 FNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s 152 (247)
.++++| +|...+...+++
T Consensus 186 ~tvi~v----THd~~ea~~l~d 203 (353)
T TIGR03265 186 VTTIMV----THDQEEALSMAD 203 (353)
T ss_pred CEEEEE----cCCHHHHHHhCC
Confidence 888766 466665555555
No 38
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=9.2e-25 Score=184.34 Aligned_cols=141 Identities=13% Similarity=0.143 Sum_probs=105.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC---CCCCC-------CCcccChhhhHh--------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---AENFD-------YPVAMDIRELIS-------------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~---~~~~~-------y~~~~~v~e~i~-------------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++. ...+. +.+..++++++.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 106 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEAR 106 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHH
Confidence 468999999999999999999999999999999997642 11222 233457777653
Q ss_pred --HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeE
Q 025844 59 --LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (247)
Q Consensus 59 --~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~i 133 (247)
+.++++.+++.+..... ...++.|++ +.||++++. +|+++|+||||+ ||+.++..+. ++++++++++.++
T Consensus 107 ~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~~lllDEP~~~LD~~~~~~~~-~~l~~~~~~~~ti 181 (210)
T cd03269 107 RRIDEWLERLELSEYANKR--VEELSKGNQQKVQFIAAVIH--DPELLILDEPFSGLDPVNVELLK-DVIRELARAGKTV 181 (210)
T ss_pred HHHHHHHHHcCChHHHhCc--HhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHCCCEE
Confidence 35677788886533222 345666654 889999999 999999999999 9999999998 8888887667777
Q ss_pred EEEEecccccccchhHHhh
Q 025844 134 CAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 134 i~v~l~d~~~~~d~~~~~s 152 (247)
+++ +|...+...+++
T Consensus 182 i~~----sH~~~~~~~~~d 196 (210)
T cd03269 182 ILS----THQMELVEELCD 196 (210)
T ss_pred EEE----CCCHHHHHHhhh
Confidence 655 455544444444
No 39
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.92 E-value=2e-24 Score=185.33 Aligned_cols=141 Identities=18% Similarity=0.214 Sum_probs=106.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-------CcccChhhhHh---------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~--------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~ 106 (236)
T cd03219 27 EIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGS 106 (236)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhcccc
Confidence 3689999999999999999999999999999999876421 12333 23356666542
Q ss_pred -----------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 025844 59 -----------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (247)
Q Consensus 59 -----------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (247)
+.++++.+++.+..... ...+++|++ +.||++++. +|+++|+||||+ ||+.++..+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l 182 (236)
T cd03219 107 GLLLARARREEREARERAEELLERVGLADLADRP--AGELSYGQQRRLEIARALAT--DPKLLLLDEPAAGLNPEETEEL 182 (236)
T ss_pred ccccccccccHHHHHHHHHHHHHHcCccchhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHH
Confidence 34567778886543332 345666654 899999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
. ++++++++.|.+++++ +|...+...+++
T Consensus 183 ~-~~l~~~~~~~~tii~v----sH~~~~~~~~~d 211 (236)
T cd03219 183 A-ELIRELRERGITVLLV----EHDMDVVMSLAD 211 (236)
T ss_pred H-HHHHHHHHCCCEEEEE----ecCHHHHHHhCC
Confidence 8 8888887667787666 465555555555
No 40
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.1e-25 Score=193.34 Aligned_cols=140 Identities=19% Similarity=0.229 Sum_probs=110.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC--------CCCCCC-Cc-------ccChhhhHh---------
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------AENFDY-PV-------AMDIRELIS--------- 58 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~--------~~~~~y-~~-------~~~v~e~i~--------- 58 (247)
+++|+||||||||||+++++|+++|++|.|.++|.+.. .+.++| +| .-+|.+-+.
T Consensus 32 ~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~ 111 (235)
T COG1122 32 RVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLP 111 (235)
T ss_pred EEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcCCC
Confidence 68999999999999999999999999999999997743 133333 11 225555443
Q ss_pred -------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (247)
Q Consensus 59 -------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (247)
++++++.+|+....... ...+++|+ +++||.+++. +|+++||||||+ ||+.+++.++ +++++|++
T Consensus 112 ~~e~~~rv~~~l~~vgl~~~~~r~--p~~LSGGqkqRvaIA~vLa~--~P~iliLDEPta~LD~~~~~~l~-~~l~~L~~ 186 (235)
T COG1122 112 REEIEERVAEALELVGLEELLDRP--PFNLSGGQKQRVAIAGVLAM--GPEILLLDEPTAGLDPKGRRELL-ELLKKLKE 186 (235)
T ss_pred HHHHHHHHHHHHHHcCchhhccCC--ccccCCcceeeHHhhHHHHc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHHHh
Confidence 77899999998774333 34567664 4999999999 999999999999 9999999999 99999987
Q ss_pred C-CCeEEEEEecccccccchhHHhh
Q 025844 129 R-NFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 129 ~-~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+ |.+++++ +|.+.....+++
T Consensus 187 ~~~~tii~~----tHd~~~~~~~ad 207 (235)
T COG1122 187 EGGKTIIIV----THDLELVLEYAD 207 (235)
T ss_pred cCCCeEEEE----eCcHHHHHhhCC
Confidence 6 6788665 466666666666
No 41
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.92 E-value=1.5e-24 Score=193.04 Aligned_cols=144 Identities=20% Similarity=0.310 Sum_probs=112.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC-------CcccChhhhHh-----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y-------~~~~~v~e~i~----------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.++| ++.+++.|++.
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~ 108 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQ 108 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHH
Confidence 4789999999999999999999999999999999976532 12333 34567777763
Q ss_pred -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 025844 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (247)
Q Consensus 59 -----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (247)
++++++.+|+.+..... ...+++|++ +.||++++. +|+++||||||+ ||+.++..+. ++++++++ +
T Consensus 109 ~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~lliLDEPt~gLD~~~~~~l~-~~l~~~~~-~ 182 (301)
T TIGR03522 109 LLKQRVEEMIELVGLRPEQHKK--IGQLSKGYRQRVGLAQALIH--DPKVLILDEPTTGLDPNQLVEIR-NVIKNIGK-D 182 (301)
T ss_pred HHHHHHHHHHHHCCCchHhcCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHhcC-C
Confidence 45677788988754444 345666654 899999999 999999999999 9999999988 88888854 6
Q ss_pred CeEEEEEecccccccchhHHhhhhHH
Q 025844 131 FNVCAVYLLDSQFITDVTKFISGCMA 156 (247)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s~~l~ 156 (247)
.+++++ +|.+.+...+|+.++.
T Consensus 183 ~tiii~----sH~l~~~~~~~d~i~~ 204 (301)
T TIGR03522 183 KTIILS----THIMQEVEAICDRVII 204 (301)
T ss_pred CEEEEE----cCCHHHHHHhCCEEEE
Confidence 777544 6878777777775443
No 42
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=5.8e-25 Score=182.74 Aligned_cols=174 Identities=18% Similarity=0.237 Sum_probs=126.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------------CCCCCCcccChhhhHh----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELIS---------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------------~~~~y~~~~~v~e~i~---------- 58 (247)
-+.+|+||||||||||+|.++|.+.|++|++.++|.++.. ++......++++|.+.
T Consensus 28 ev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~ 107 (259)
T COG4559 28 EVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGR 107 (259)
T ss_pred cEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccccCC
Confidence 4689999999999999999999999999999999987532 2222222346666664
Q ss_pred --------HHHHHHHcCCCCCCchhhhHHhhhhhHHHHHHHHhhcCCC----CCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLD----DDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 59 --------~~~~l~~~~L~~~~~~~~~~~~l~~~~~~~la~al~~~~~----p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
++++|...++....++-|..-+..+.+++.+||.|++... +++|+|||||+ ||+..+...+ ++.++
T Consensus 108 ~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl-~laR~ 186 (259)
T COG4559 108 EPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTL-RLARQ 186 (259)
T ss_pred CchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHH-HHHHH
Confidence 6778999999888777765433333466999999997643 35999999999 9999999999 99999
Q ss_pred HHhCCCeEEEEEecccccccchhHHhhhhHHHhHHHh-hccCCeeeeecccccccchhhhhhhcc
Q 025844 126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV-QLELPHVNILSKMDLVTNKKEIEDYLN 189 (247)
Q Consensus 126 l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~-~~~~p~i~vlsk~dll~~~~~~~~~~~ 189 (247)
+.++|..|++| ++| +.-.+.|++++++...+.+ ..+.| .|.+..+ .++..+.
T Consensus 187 la~~g~~V~~V-LHD---LNLAA~YaDrivll~~Grv~a~g~p-------~~vlt~E-tl~~vyg 239 (259)
T COG4559 187 LAREGGAVLAV-LHD---LNLAAQYADRIVLLHQGRVIASGSP-------QDVLTDE-TLERVYG 239 (259)
T ss_pred HHhcCCcEEEE-Ecc---chHHHHhhheeeeeeCCeEeecCCH-------HHhcCHH-HHHHHhC
Confidence 99888888777 344 4445677777666544432 33333 3344444 5555554
No 43
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=1.2e-25 Score=190.41 Aligned_cols=141 Identities=16% Similarity=0.176 Sum_probs=113.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---------------CCCCCCcccChhhhHh---------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS--------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---------------~~~~y~~~~~v~e~i~--------- 58 (247)
-++++||||||||||++++++|+++|++|+|.+.|.|+.. |....++++|+.||+.
T Consensus 31 ei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~ 110 (250)
T COG0411 31 EIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGL 110 (250)
T ss_pred eEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhh
Confidence 4789999999999999999999999999999999987632 4444467888888874
Q ss_pred -------------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHH
Q 025844 59 -------------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHV 116 (247)
Q Consensus 59 -------------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~ 116 (247)
+.++++.+||.+....... .++.+.+ +.||+||+. +|++|+||||.+ +.+....
T Consensus 111 ~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~--~LsyG~qR~LEIArALa~--~P~lLLLDEPaAGln~~e~~ 186 (250)
T COG0411 111 SGLLGRPRARKEEREARERARELLEFVGLGELADRPAG--NLSYGQQRRLEIARALAT--QPKLLLLDEPAAGLNPEETE 186 (250)
T ss_pred hhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh--cCChhHhHHHHHHHHHhc--CCCEEEecCccCCCCHHHHH
Confidence 4567888999887655532 3444332 899999999 999999999999 9999999
Q ss_pred HHHHHHHHHHHh-CCCeEEEEEecccccccchhHHhh
Q 025844 117 PVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 117 ~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++. ++++++++ .|.++++|- |.+.-.-.+|+
T Consensus 187 ~l~-~~i~~i~~~~g~tillIE----HdM~~Vm~l~d 218 (250)
T COG0411 187 ELA-ELIRELRDRGGVTILLIE----HDMKLVMGLAD 218 (250)
T ss_pred HHH-HHHHHHHhcCCcEEEEEE----eccHHHhhhcc
Confidence 999 99999987 468887772 55554555555
No 44
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.92 E-value=2.1e-24 Score=184.76 Aligned_cols=141 Identities=17% Similarity=0.221 Sum_probs=105.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-------CcccChhhhHh---------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~--------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| .+..++++++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 106 (232)
T cd03218 27 EIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLS 106 (232)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcCCC
Confidence 3689999999999999999999999999999999875421 12333 23456776653
Q ss_pred -------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (247)
Q Consensus 59 -------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (247)
++++++.+++.+..... ...+++|++ +.||++++. +|+++|+||||+ ||+.++..+. ++++++.+
T Consensus 107 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~ 181 (232)
T cd03218 107 KKEREEKLEELLEEFHITHLRKSK--ASSLSGGERRRVEIARALAT--NPKFLLLDEPFAGVDPIAVQDIQ-KIIKILKD 181 (232)
T ss_pred HHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHH-HHHHHHHH
Confidence 34677788886543322 245666543 899999999 999999999999 9999999998 88888876
Q ss_pred CCCeEEEEEecccccccchhHHhh
Q 025844 129 RNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 129 ~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
.+.+++++ +|...+...+++
T Consensus 182 ~~~tii~~----sH~~~~~~~~~d 201 (232)
T cd03218 182 RGIGVLIT----DHNVRETLSITD 201 (232)
T ss_pred CCCEEEEE----eCCHHHHHHhCC
Confidence 67787665 355555555544
No 45
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.92 E-value=1.4e-24 Score=182.97 Aligned_cols=141 Identities=15% Similarity=0.209 Sum_probs=107.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----CCCCC-------CcccChhhhHh------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----~~~~y-------~~~~~v~e~i~------------ 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 106 (208)
T cd03268 27 EIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKR 106 (208)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHH
Confidence 4689999999999999999999999999999999976531 12222 33567777763
Q ss_pred HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEE
Q 025844 59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (247)
Q Consensus 59 ~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~ 135 (247)
++++++.+++....... ...+++|++ ++||++++. +|+++|+||||+ ||+.++..+. ++++++++++.++++
T Consensus 107 ~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~ 181 (208)
T cd03268 107 IDEVLDVVGLKDSAKKK--VKGFSLGMKQRLGIALALLG--NPDLLILDEPTNGLDPDGIKELR-ELILSLRDQGITVLI 181 (208)
T ss_pred HHHHHHHcCCHHHHhhh--HhhCCHHHHHHHHHHHHHhc--CCCEEEECCCcccCCHHHHHHHH-HHHHHHHHCCCEEEE
Confidence 45677888886543333 345666654 899999999 999999999999 9999999998 888888766777766
Q ss_pred EEecccccccchhHHhh
Q 025844 136 VYLLDSQFITDVTKFIS 152 (247)
Q Consensus 136 v~l~d~~~~~d~~~~~s 152 (247)
+ +|...+...+++
T Consensus 182 ~----tH~~~~~~~~~d 194 (208)
T cd03268 182 S----SHLLSEIQKVAD 194 (208)
T ss_pred E----cCCHHHHHHhcC
Confidence 5 455554445444
No 46
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.92 E-value=2.1e-24 Score=198.73 Aligned_cols=148 Identities=18% Similarity=0.253 Sum_probs=114.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-------CcccChhhhHh----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS---------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-------~~~~~v~e~i~---------- 58 (247)
-+++|+||||||||||+|+|+|+++|++|+|+++|.++.. ..++| ++.+++++++.
T Consensus 30 eiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~ 109 (402)
T PRK09536 30 SLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRF 109 (402)
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccc
Confidence 3689999999999999999999999999999999976532 12222 23456665542
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
++++++.+++.+..... ...++.|+ ++.||++|++ +|++|||||||+ ||+.++..++ +++++
T Consensus 110 ~~~~~~~~~~v~~~le~vgl~~~~~~~--~~~LSgGerQRv~IArAL~~--~P~iLLLDEPtsgLD~~~~~~l~-~lL~~ 184 (402)
T PRK09536 110 DTWTETDRAAVERAMERTGVAQFADRP--VTSLSGGERQRVLLARALAQ--ATPVLLLDEPTASLDINHQVRTL-ELVRR 184 (402)
T ss_pred cCCCHHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHH
Confidence 56788888987654443 34566664 4999999999 999999999999 9999999998 99999
Q ss_pred HHhCCCeEEEEEecccccccchhHHhhhhHHHhH
Q 025844 126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS 159 (247)
Q Consensus 126 l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~ 159 (247)
+++++.+++++ +|.+.+...+++.+++...
T Consensus 185 l~~~g~TIIiv----sHdl~~~~~~adrii~l~~ 214 (402)
T PRK09536 185 LVDDGKTAVAA----IHDLDLAARYCDELVLLAD 214 (402)
T ss_pred HHhcCCEEEEE----ECCHHHHHHhCCEEEEEEC
Confidence 97667787655 5777777777776554433
No 47
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.92 E-value=2e-24 Score=196.61 Aligned_cols=141 Identities=16% Similarity=0.268 Sum_probs=111.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCC--ceEEEeccCCCC------------CCCCCCcccChhhhHh----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVR--RTMHIVNLDPAA------------ENFDYPVAMDIRELIS---------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~--G~v~i~g~d~~~------------~~~~y~~~~~v~e~i~---------- 58 (247)
-+++|+||||||||||+++|+|+.+|++ |+|.++|.+... ++...++.+|+++++.
T Consensus 32 e~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~ 111 (362)
T TIGR03258 32 ELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPK 111 (362)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCH
Confidence 3689999999999999999999999999 999999976521 2222345678888874
Q ss_pred ------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 025844 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (247)
Q Consensus 59 ------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (247)
++++++.++|.+..... ...+++|+ +++|||+|+. +|+++|||||++ ||+..+..+. +.++++.++
T Consensus 112 ~~~~~~v~~~l~~~gL~~~~~~~--~~~LSgGq~QRvaLARAL~~--~P~llLLDEP~s~LD~~~r~~l~-~~l~~l~~~ 186 (362)
T TIGR03258 112 ADIAERVADALKLVGLGDAAAHL--PAQLSGGMQQRIAIARAIAI--EPDVLLLDEPLSALDANIRANMR-EEIAALHEE 186 (362)
T ss_pred HHHHHHHHHHHHhcCCCchhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHH-HHHHHHHHh
Confidence 56788889998765444 34566665 4999999999 999999999999 9999999988 888888764
Q ss_pred --CCeEEEEEecccccccchhHHhh
Q 025844 130 --NFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 130 --~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
|.++++| +|...+...+++
T Consensus 187 ~~g~til~v----THd~~ea~~l~d 207 (362)
T TIGR03258 187 LPELTILCV----THDQDDALTLAD 207 (362)
T ss_pred CCCCEEEEE----eCCHHHHHHhCC
Confidence 6788666 466665555555
No 48
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=9.9e-25 Score=185.53 Aligned_cols=141 Identities=18% Similarity=0.185 Sum_probs=105.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--CCCCC-------CcccChhhhHh---------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDY-------PVAMDIRELIS--------------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--~~~~y-------~~~~~v~e~i~--------------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... +.++| .+..++++++.
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 110 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARE 110 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHH
Confidence 4789999999999999999999999999999999876521 22333 23456766653
Q ss_pred -HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeE
Q 025844 59 -LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNV 133 (247)
Q Consensus 59 -~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~i 133 (247)
+.++++.+++.+..... ...+++|++ ++||++++. +|+++|+||||+ ||+.++..+. ++++++.+ .+.++
T Consensus 111 ~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~~~-~~l~~~~~~~~~ti 185 (220)
T cd03293 111 RAEELLELVGLSGFENAY--PHQLSGGMRQRVALARALAV--DPDVLLLDEPFSALDALTREQLQ-EELLDIWRETGKTV 185 (220)
T ss_pred HHHHHHHHcCChhhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEECCCCCCCCHHHHHHHH-HHHHHHHHHcCCEE
Confidence 35677888886543222 235666643 899999999 999999999999 9999999998 88888754 47777
Q ss_pred EEEEecccccccchhHHhh
Q 025844 134 CAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 134 i~v~l~d~~~~~d~~~~~s 152 (247)
+++ +|...+...+++
T Consensus 186 ii~----sH~~~~~~~~~d 200 (220)
T cd03293 186 LLV----THDIDEAVFLAD 200 (220)
T ss_pred EEE----ecCHHHHHHhCC
Confidence 666 355554445544
No 49
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.92 E-value=3.2e-24 Score=195.16 Aligned_cols=144 Identities=17% Similarity=0.180 Sum_probs=112.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC-----------CCCCCC-------CcccChhhhHh------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENFDY-------PVAMDIRELIS------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~-----------~~~~~y-------~~~~~v~e~i~------ 58 (247)
-+++|+||||||||||+++|+|+++|++|+|+++|.+.. ...++| ++.+|+++++.
T Consensus 20 ei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~ 99 (363)
T TIGR01186 20 EIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELL 99 (363)
T ss_pred CEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999999999999999997653 123333 45678888874
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
+.++++.+||....... ...+++|++ ++||++++. +|+++|+|||++ ||+.++..+. +.+.+
T Consensus 100 ~~~~~~~~~~~~~~l~~vgL~~~~~~~--p~~LSGGq~QRV~lARAL~~--~p~iLLlDEP~saLD~~~r~~l~-~~l~~ 174 (363)
T TIGR01186 100 GWPEQERKEKALELLKLVGLEEYEHRY--PDELSGGMQQRVGLARALAA--EPDILLMDEAFSALDPLIRDSMQ-DELKK 174 (363)
T ss_pred CCCHHHHHHHHHHHHHhcCCchhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHH
Confidence 45778889997654333 245777654 899999999 999999999999 9999999998 88888
Q ss_pred HHh-CCCeEEEEEecccccccchhHHhhhhH
Q 025844 126 LKS-RNFNVCAVYLLDSQFITDVTKFISGCM 155 (247)
Q Consensus 126 l~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l 155 (247)
+.+ .+.+++++ +|.+.+...+++.++
T Consensus 175 l~~~~~~Tii~v----THd~~ea~~~~drI~ 201 (363)
T TIGR01186 175 LQATLQKTIVFI----THDLDEAIRIGDRIV 201 (363)
T ss_pred HHHhcCCEEEEE----eCCHHHHHHhCCEEE
Confidence 865 47888766 466665566655443
No 50
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.92 E-value=1.2e-24 Score=183.87 Aligned_cols=141 Identities=17% Similarity=0.227 Sum_probs=104.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCC-------CcccChhhhHh-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y-------~~~~~v~e~i~------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 28 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~ 107 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG 107 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC
Confidence 3689999999999999999999999999999999876421 12333 23456776653
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (247)
Q Consensus 59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (247)
+.++++.+++.+..... ...++.|++ +.||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 108 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~ 182 (214)
T cd03292 108 VPPREIRKRVPAALELVGLSHKHRAL--PAELSGGEQQRVAIARAIVN--SPTILIADEPTGNLDPDTTWEIM-NLLKKI 182 (214)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHhhCC--hhhcCHHHHHHHHHHHHHHc--CCCEEEEeCCCCcCCHHHHHHHH-HHHHHH
Confidence 34677788886543222 245666543 899999999 999999999999 9999999988 888888
Q ss_pred HhCCCeEEEEEecccccccchhHHhh
Q 025844 127 KSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++.+++++ +|.......+++
T Consensus 183 ~~~~~tiiiv----tH~~~~~~~~~d 204 (214)
T cd03292 183 NKAGTTVVVA----THAKELVDTTRH 204 (214)
T ss_pred HHcCCEEEEE----eCCHHHHHHhCC
Confidence 6667787666 354444444433
No 51
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.2e-24 Score=196.00 Aligned_cols=141 Identities=16% Similarity=0.137 Sum_probs=108.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----CCCCC-------CcccChhhhHh------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----~~~~y-------~~~~~v~e~i~------------ 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| ++.+|+++++.
T Consensus 30 e~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~ 109 (369)
T PRK11000 30 EFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEE 109 (369)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHH
Confidence 3689999999999999999999999999999999876421 22322 44568888764
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-C
Q 025844 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N 130 (247)
Q Consensus 59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~ 130 (247)
++++++.+++....... ...+++|++ ++||++++. +|++||||||++ ||+.++..+. ++++++.++ |
T Consensus 110 ~~~~~~~~l~~lgL~~~~~~~--~~~LSgGq~QRvaLAraL~~--~P~lLLLDEPts~LD~~~~~~l~-~~L~~l~~~~g 184 (369)
T PRK11000 110 INQRVNQVAEVLQLAHLLDRK--PKALSGGQRQRVAIGRTLVA--EPSVFLLDEPLSNLDAALRVQMR-IEISRLHKRLG 184 (369)
T ss_pred HHHHHHHHHHHcCChhhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHHhC
Confidence 45678888987644333 245666654 999999999 999999999999 9999999988 888888654 7
Q ss_pred CeEEEEEecccccccchhHHhh
Q 025844 131 FNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s 152 (247)
.+++++ +|...+...+++
T Consensus 185 ~tvI~v----THd~~~~~~~~d 202 (369)
T PRK11000 185 RTMIYV----THDQVEAMTLAD 202 (369)
T ss_pred CEEEEE----eCCHHHHHHhCC
Confidence 888666 365555555555
No 52
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=3.7e-24 Score=184.24 Aligned_cols=141 Identities=15% Similarity=0.163 Sum_probs=104.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----CCCCC-------CcccChhhhHh------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----~~~~y-------~~~~~v~e~i~------------ 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| .+..++.+++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 108 (239)
T cd03296 29 ELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERP 108 (239)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccC
Confidence 3689999999999999999999999999999999876421 22333 22346666543
Q ss_pred --------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (247)
Q Consensus 59 --------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (247)
++++++.+++.+..... ...++.|++ +.||++++. +|+++|+||||+ ||+.++..+. +++++++
T Consensus 109 ~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~ 183 (239)
T cd03296 109 PEAEIRAKVHELLKLVQLDWLADRY--PAQLSGGQRQRVALARALAV--EPKVLLLDEPFGALDAKVRKELR-RWLRRLH 183 (239)
T ss_pred CHHHHHHHHHHHHHHcCChhhhhcC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHH
Confidence 24567778886543222 245666654 899999999 999999999999 9999999998 8888887
Q ss_pred hC-CCeEEEEEecccccccchhHHhh
Q 025844 128 SR-NFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 128 ~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++ |.+++++ +|...+...+++
T Consensus 184 ~~~~~tvii~----sH~~~~~~~~~d 205 (239)
T cd03296 184 DELHVTTVFV----THDQEEALEVAD 205 (239)
T ss_pred HHcCCEEEEE----eCCHHHHHHhCC
Confidence 64 7787666 355444444444
No 53
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.8e-24 Score=195.02 Aligned_cols=141 Identities=16% Similarity=0.182 Sum_probs=111.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------------CCCCCCcccChhhhHh------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------------~~~~y~~~~~v~e~i~------------ 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ++...++.+|+.+++.
T Consensus 33 e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~ 112 (351)
T PRK11432 33 TMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEE 112 (351)
T ss_pred CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHH
Confidence 4689999999999999999999999999999999976421 2223356778888875
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-C
Q 025844 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N 130 (247)
Q Consensus 59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~ 130 (247)
++++++.+++.+..... ...+++|+ +++|||+|+. +|+++|||||++ ||+..+..+. +.++++.++ |
T Consensus 113 ~~~~v~~~l~~~gl~~~~~r~--~~~LSgGq~QRVaLARaL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g 187 (351)
T PRK11432 113 RKQRVKEALELVDLAGFEDRY--VDQISGGQQQRVALARALIL--KPKVLLFDEPLSNLDANLRRSMR-EKIRELQQQFN 187 (351)
T ss_pred HHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 45688888997765444 24566664 4999999999 999999999999 9999999988 888888654 7
Q ss_pred CeEEEEEecccccccchhHHhh
Q 025844 131 FNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s 152 (247)
.++++| +|...+...+++
T Consensus 188 ~tii~v----THd~~e~~~laD 205 (351)
T PRK11432 188 ITSLYV----THDQSEAFAVSD 205 (351)
T ss_pred CEEEEE----cCCHHHHHHhCC
Confidence 888666 466665555555
No 54
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.92 E-value=1.3e-24 Score=183.51 Aligned_cols=141 Identities=20% Similarity=0.218 Sum_probs=105.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC--------CcccChhhhHh---------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY--------PVAMDIRELIS--------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y--------~~~~~v~e~i~--------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.++| .+..++++++.
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~ 107 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLP 107 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcCCC
Confidence 4789999999999999999999999999999999875421 22333 12346666553
Q ss_pred -------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (247)
Q Consensus 59 -------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (247)
++++++.+++.+..... ...+++|++ ++||++++. +|+++|+||||+ ||+.++..+. ++++++++
T Consensus 108 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~ 182 (211)
T cd03225 108 EEEIEERVEEALELVGLEGLRDRS--PFTLSGGQKQRVAIAGVLAM--DPDILLLDEPTAGLDPAGRRELL-ELLKKLKA 182 (211)
T ss_pred HHHHHHHHHHHHHHcCcHhhhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHH
Confidence 34577788886533322 234666643 899999999 999999999999 9999999998 88888876
Q ss_pred CCCeEEEEEecccccccchhHHhh
Q 025844 129 RNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 129 ~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+|.+++++ +|...+...+++
T Consensus 183 ~~~tvi~~----sH~~~~~~~~~d 202 (211)
T cd03225 183 EGKTIIIV----THDLDLLLELAD 202 (211)
T ss_pred cCCEEEEE----eCCHHHHHHhCC
Confidence 67777665 455554445444
No 55
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=3.1e-24 Score=194.35 Aligned_cols=145 Identities=14% Similarity=0.204 Sum_probs=111.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCC-------CcccChhhhHh-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y-------~~~~~v~e~i~------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.++| .+..++++++.
T Consensus 32 ei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~ 111 (343)
T PRK11153 32 EIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAG 111 (343)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcC
Confidence 4689999999999999999999999999999999976531 22333 23467777764
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (247)
Q Consensus 59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (247)
+.++++.+|+.+..... ...+++|++ +.||++++. +|+++||||||+ ||+.++..+. ++++++
T Consensus 112 ~~~~~~~~~~~~~l~~~gL~~~~~~~--~~~LSgGq~qRv~lAraL~~--~p~iLlLDEPts~LD~~~~~~l~-~~L~~l 186 (343)
T PRK11153 112 TPKAEIKARVTELLELVGLSDKADRY--PAQLSGGQKQRVAIARALAS--NPKVLLCDEATSALDPATTRSIL-ELLKDI 186 (343)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHH
Confidence 35678888887643333 245666654 899999999 999999999999 9999999998 889888
Q ss_pred HhC-CCeEEEEEecccccccchhHHhhhhHH
Q 025844 127 KSR-NFNVCAVYLLDSQFITDVTKFISGCMA 156 (247)
Q Consensus 127 ~~~-~~~ii~v~l~d~~~~~d~~~~~s~~l~ 156 (247)
+++ |.+++++ +|.+.+...+++.++.
T Consensus 187 ~~~~g~tiilv----tH~~~~i~~~~d~v~~ 213 (343)
T PRK11153 187 NRELGLTIVLI----THEMDVVKRICDRVAV 213 (343)
T ss_pred HHhcCCEEEEE----eCCHHHHHHhCCEEEE
Confidence 654 7888666 4666655666664433
No 56
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.92 E-value=1.3e-24 Score=186.30 Aligned_cols=143 Identities=16% Similarity=0.174 Sum_probs=106.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---------CCCCCCcccChhhhHh---------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDYPVAMDIRELIS--------------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---------~~~~y~~~~~v~e~i~--------------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... +...+.+..++.+++.
T Consensus 12 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~ 91 (230)
T TIGR01184 12 EFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSER 91 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcccCCCHHHH
Confidence 3789999999999999999999999999999999876431 1111223456666543
Q ss_pred ---HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CC
Q 025844 59 ---LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NF 131 (247)
Q Consensus 59 ---~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~ 131 (247)
+.++++.+++....... ...+++|++ +.||++++. +|+++|+||||+ ||+.++..+. +++++++++ |.
T Consensus 92 ~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~~~~~~~~ 166 (230)
T TIGR01184 92 RAIVEEHIALVGLTEAADKR--PGQLSGGMKQRVAIARALSI--RPKVLLLDEPFGALDALTRGNLQ-EELMQIWEEHRV 166 (230)
T ss_pred HHHHHHHHHHcCCHHHHcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCCcCCCHHHHHHHH-HHHHHHHHhcCC
Confidence 34567778886433222 345666654 899999999 999999999999 9999999998 888887654 77
Q ss_pred eEEEEEecccccccchhHHhhhh
Q 025844 132 NVCAVYLLDSQFITDVTKFISGC 154 (247)
Q Consensus 132 ~ii~v~l~d~~~~~d~~~~~s~~ 154 (247)
+++++ +|...+...+++.+
T Consensus 167 tii~~----sH~~~~~~~~~d~v 185 (230)
T TIGR01184 167 TVLMV----THDVDEALLLSDRV 185 (230)
T ss_pred EEEEE----eCCHHHHHHhcCEE
Confidence 87666 46655555555533
No 57
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=5.8e-25 Score=180.98 Aligned_cols=137 Identities=23% Similarity=0.373 Sum_probs=110.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------------CCCCCCcccChhhhH-----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELI----------- 57 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------------~~~~y~~~~~v~e~i----------- 57 (247)
-++++|||||||||||+.+++.+++.++|+|+++|++... |.-.+...+||+|.+
T Consensus 28 ~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGR 107 (252)
T COG4604 28 GITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGR 107 (252)
T ss_pred ceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCC
Confidence 4689999999999999999999999999999999987643 111122233444444
Q ss_pred -------hHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844 58 -------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (247)
Q Consensus 58 -------~~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (247)
.+.+.++.++|.+...+. ++.+++|++ ..+|..+++ +.+|++||||-+ ||.....++| ++++++.
T Consensus 108 lt~eD~~~I~~aieyl~L~~l~dry--Ld~LSGGQrQRAfIAMVlaQ--dTdyvlLDEPLNNLDmkHsv~iM-k~Lrrla 182 (252)
T COG4604 108 LTKEDRRIINEAIEYLHLEDLSDRY--LDELSGGQRQRAFIAMVLAQ--DTDYVLLDEPLNNLDMKHSVQIM-KILRRLA 182 (252)
T ss_pred CchHHHHHHHHHHHHhcccchHHHh--HHhcccchhhhhhhheeeec--cCcEEEecCcccccchHHHHHHH-HHHHHHH
Confidence 489999999999876655 678888875 789999999 999999999999 9999999999 9999987
Q ss_pred h-CCCeEEEEEeccccccc
Q 025844 128 S-RNFNVCAVYLLDSQFIT 145 (247)
Q Consensus 128 ~-~~~~ii~v~l~d~~~~~ 145 (247)
+ .|+++++| +||..+.+
T Consensus 183 ~el~KtiviV-lHDINfAS 200 (252)
T COG4604 183 DELGKTIVVV-LHDINFAS 200 (252)
T ss_pred HHhCCeEEEE-EecccHHH
Confidence 5 48888777 56655543
No 58
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=4e-24 Score=183.22 Aligned_cols=141 Identities=15% Similarity=0.200 Sum_probs=106.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCC-------CcccChhhhHh-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y-------~~~~~v~e~i~------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++.+++.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~ 111 (233)
T cd03258 32 EIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG 111 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC
Confidence 4789999999999999999999999999999999976421 12333 23457777653
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (247)
Q Consensus 59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (247)
+.++++.+++.+..... ...+++|+ ++.||++++. +|+++|||||++ ||+.++..+. ++++++
T Consensus 112 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~lllLDEP~~~LD~~~~~~l~-~~l~~~ 186 (233)
T cd03258 112 VPKAEIEERVLELLELVGLEDKADAY--PAQLSGGQKQRVGIARALAN--NPKVLLCDEATSALDPETTQSIL-ALLRDI 186 (233)
T ss_pred CCHHHHHHHHHHHHHHCCChhhhhcC--hhhCCHHHHHHHHHHHHHhc--CCCEEEecCCCCcCCHHHHHHHH-HHHHHH
Confidence 35677888886543332 24566654 3899999999 999999999999 9999999998 888888
Q ss_pred HhC-CCeEEEEEecccccccchhHHhh
Q 025844 127 KSR-NFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 127 ~~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+++ |.+++++ +|...+...+++
T Consensus 187 ~~~~~~tvii~----sH~~~~~~~~~d 209 (233)
T cd03258 187 NRELGLTIVLI----THEMEVVKRICD 209 (233)
T ss_pred HHHcCCEEEEE----eCCHHHHHHhCC
Confidence 664 7787666 355554445444
No 59
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.92 E-value=4e-24 Score=180.59 Aligned_cols=141 Identities=20% Similarity=0.251 Sum_probs=105.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---------CCCCC-------CcccChhhhHh--------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-------PVAMDIRELIS-------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---------~~~~y-------~~~~~v~e~i~-------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... +.++| .+..++.+++.
T Consensus 27 ~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~ 106 (213)
T cd03262 27 EVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKG 106 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcC
Confidence 3789999999999999999999999999999999875421 22333 22356666652
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (247)
Q Consensus 59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (247)
+.++++.+++.+..... ...+++|++ ++||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 107 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~ 181 (213)
T cd03262 107 MSKAEAEERALELLEKVGLADKADAY--PAQLSGGQQQRVAIARALAM--NPKVMLFDEPTSALDPELVGEVL-DVMKDL 181 (213)
T ss_pred CCHHHHHHHHHHHHHHcCCHhHhhhC--ccccCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHH
Confidence 35567778886543222 234666543 899999999 999999999999 9999999988 889988
Q ss_pred HhCCCeEEEEEecccccccchhHHhh
Q 025844 127 KSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++.|.+++++ +|...+...+++
T Consensus 182 ~~~~~tvi~~----sh~~~~~~~~~d 203 (213)
T cd03262 182 AEEGMTMVVV----THEMGFAREVAD 203 (213)
T ss_pred HHcCCEEEEE----eCCHHHHHHhCC
Confidence 7667777665 355554445444
No 60
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.92 E-value=5.5e-24 Score=193.29 Aligned_cols=141 Identities=16% Similarity=0.190 Sum_probs=108.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----CCCC-------CCcccChhhhHh------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFD-------YPVAMDIRELIS------------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----~~~~-------y~~~~~v~e~i~------------ 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++ +++.+++.+++.
T Consensus 29 e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~ 108 (353)
T PRK10851 29 QMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERP 108 (353)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCC
Confidence 3689999999999999999999999999999999976531 1222 344567766653
Q ss_pred --------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (247)
Q Consensus 59 --------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (247)
++++++.+++....... ...+++|+ +++||++++. +|+++|+|||++ ||+.++..+. +.++++.
T Consensus 109 ~~~~~~~~~~~~l~~~~L~~~~~~~--~~~LSgGq~QRvalArAL~~--~P~llLLDEP~s~LD~~~r~~l~-~~L~~l~ 183 (353)
T PRK10851 109 NAAAIKAKVTQLLEMVQLAHLADRY--PAQLSGGQKQRVALARALAV--EPQILLLDEPFGALDAQVRKELR-RWLRQLH 183 (353)
T ss_pred CHHHHHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHH
Confidence 34578888887654443 24566665 4999999999 999999999999 9999999988 8888887
Q ss_pred hC-CCeEEEEEecccccccchhHHhh
Q 025844 128 SR-NFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 128 ~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++ +.++++| +|...+...+++
T Consensus 184 ~~~g~tii~v----THd~~ea~~~~D 205 (353)
T PRK10851 184 EELKFTSVFV----THDQEEAMEVAD 205 (353)
T ss_pred HhcCCEEEEE----eCCHHHHHHhCC
Confidence 64 7888666 466665556555
No 61
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.92 E-value=1.8e-24 Score=182.80 Aligned_cols=141 Identities=15% Similarity=0.134 Sum_probs=104.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----CCCCC-------CcccChhhhHh------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----~~~~y-------~~~~~v~e~i~------------ 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~ 106 (213)
T cd03301 27 EFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDE 106 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHH
Confidence 3689999999999999999999999999999999876421 12333 22457776653
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 025844 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (247)
Q Consensus 59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (247)
+.++++.+++.+..... ...++.|++ ++||++++. +|+++|+||||+ ||+.+++.+. ++++++.+ .+
T Consensus 107 ~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qr~~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~ 181 (213)
T cd03301 107 IDERVREVAELLQIEHLLDRK--PKQLSGGQRQRVALGRAIVR--EPKVFLMDEPLSNLDAKLRVQMR-AELKRLQQRLG 181 (213)
T ss_pred HHHHHHHHHHHcCCHHHHhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcC
Confidence 34567788886543322 234666543 899999999 999999999999 9999999998 88888865 47
Q ss_pred CeEEEEEecccccccchhHHhh
Q 025844 131 FNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s 152 (247)
.+++++ +|...+...+++
T Consensus 182 ~tvi~~----sH~~~~~~~~~d 199 (213)
T cd03301 182 TTTIYV----THDQVEAMTMAD 199 (213)
T ss_pred CEEEEE----eCCHHHHHHhcC
Confidence 787666 354444444433
No 62
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.91 E-value=4.1e-24 Score=179.56 Aligned_cols=129 Identities=18% Similarity=0.149 Sum_probs=101.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC-------CcccChhhhHh----------H
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------L 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y-------~~~~~v~e~i~----------~ 59 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| .+..++++++. +
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 106 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQV 106 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhcccccHHHH
Confidence 4789999999999999999999999999999999876531 12222 23457777763 5
Q ss_pred HHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 60 EDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 60 ~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
+++++.+++.+..... ...++++++ +++|++++. +|+++|+||||+ ||+.+++.+. +++++++++|.+++++
T Consensus 107 ~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~g~tiii~ 181 (201)
T cd03231 107 EEALARVGLNGFEDRP--VAQLSAGQQRRVALARLLLS--GRPLWILDEPTTALDKAGVARFA-EAMAGHCARGGMVVLT 181 (201)
T ss_pred HHHHHHcCChhhhcCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 6778888987543332 345666543 899999999 999999999999 9999999998 8888886667777665
No 63
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=7.9e-24 Score=182.53 Aligned_cols=141 Identities=21% Similarity=0.275 Sum_probs=105.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-------CcccChhhhHh----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS---------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-------~~~~~v~e~i~---------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 107 (242)
T cd03295 28 EFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPK 107 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCCCH
Confidence 4689999999999999999999999999999999876421 12333 23457777653
Q ss_pred ------HHHHHHHcCCCC--CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844 59 ------LEDVMEELGLGP--NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (247)
Q Consensus 59 ------~~~~l~~~~L~~--~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (247)
+.++++.+++.+ ..... ...++.|++ +.||++++. +|+++|+||||+ ||+.++..+. +++++++
T Consensus 108 ~~~~~~~~~~l~~l~l~~~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~L~~~~ 182 (242)
T cd03295 108 EKIRERADELLALVGLDPAEFADRY--PHELSGGQQQRVGVARALAA--DPPLLLMDEPFGALDPITRDQLQ-EEFKRLQ 182 (242)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHhcC--hhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHH-HHHHHHH
Confidence 456788888875 22222 245666654 899999999 999999999999 9999999988 8888886
Q ss_pred hC-CCeEEEEEecccccccchhHHhh
Q 025844 128 SR-NFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 128 ~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++ |.+++++ +|...+...+++
T Consensus 183 ~~~g~tvii~----sH~~~~~~~~~d 204 (242)
T cd03295 183 QELGKTIVFV----THDIDEAFRLAD 204 (242)
T ss_pred HHcCCEEEEE----ecCHHHHHHhCC
Confidence 54 7777666 355544444444
No 64
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.91 E-value=3.7e-24 Score=178.05 Aligned_cols=129 Identities=16% Similarity=0.162 Sum_probs=99.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC---------CCCCCC-Cc-------ccChhhhHh-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------AENFDY-PV-------AMDIRELIS------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~---------~~~~~y-~~-------~~~v~e~i~------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+.. ...+.| ++ ..++++++.
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~~~~~~~ 98 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLG 98 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHHHHHHHHcC
Confidence 478999999999999999999999999999999986642 112233 11 236666553
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (247)
Q Consensus 59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (247)
+.++++.+++.+..... ...+++|+ ++.||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 99 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~ 173 (190)
T TIGR01166 99 LSEAEVERRVREALTAVGASGLRERP--THCLSGGEKKRVAIAGAVAM--RPDVLLLDEPTAGLDPAGREQML-AILRRL 173 (190)
T ss_pred CCHHHHHHHHHHHHHHcCchhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHH
Confidence 35577778887543333 24566654 3899999999 999999999999 9999999998 888888
Q ss_pred HhCCCeEEEE
Q 025844 127 KSRNFNVCAV 136 (247)
Q Consensus 127 ~~~~~~ii~v 136 (247)
+++|.+++++
T Consensus 174 ~~~~~tili~ 183 (190)
T TIGR01166 174 RAEGMTVVIS 183 (190)
T ss_pred HHcCCEEEEE
Confidence 7667787666
No 65
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.91 E-value=3.3e-24 Score=183.11 Aligned_cols=141 Identities=17% Similarity=0.081 Sum_probs=106.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--CCCCCCcccChhhhHh----------------HHHHHH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDYPVAMDIRELIS----------------LEDVME 64 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--~~~~y~~~~~v~e~i~----------------~~~~l~ 64 (247)
-+++|+||||||||||+++|+|+++|++|+|+++|.+... ....+.+..++++++. +.++++
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~ 128 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIE 128 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999976431 2233455667777653 345666
Q ss_pred HcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEeccc
Q 025844 65 ELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS 141 (247)
Q Consensus 65 ~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~ 141 (247)
.+++.+..... ...+++|++ +.||++++. +|+++|+|||++ ||+.+++.+. ++++++++++.+++++ +
T Consensus 129 ~~~l~~~~~~~--~~~LSgG~~qrv~laral~~--~p~llllDEP~~gLD~~~~~~~~-~~l~~~~~~~~tiii~----s 199 (224)
T cd03220 129 FSELGDFIDLP--VKTYSSGMKARLAFAIATAL--EPDILLIDEVLAVGDAAFQEKCQ-RRLRELLKQGKTVILV----S 199 (224)
T ss_pred HcCChhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEE----e
Confidence 77886543333 245666654 899999999 999999999999 9999999988 8888886667777666 3
Q ss_pred ccccchhHHhh
Q 025844 142 QFITDVTKFIS 152 (247)
Q Consensus 142 ~~~~d~~~~~s 152 (247)
|...+...+++
T Consensus 200 H~~~~~~~~~d 210 (224)
T cd03220 200 HDPSSIKRLCD 210 (224)
T ss_pred CCHHHHHHhCC
Confidence 55544444444
No 66
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1e-24 Score=189.97 Aligned_cols=144 Identities=15% Similarity=0.167 Sum_probs=116.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEecc---CCCC-----CCCC-------CCcccChhhhHh----------
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL---DPAA-----ENFD-------YPVAMDIRELIS---------- 58 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~---d~~~-----~~~~-------y~~~~~v~e~i~---------- 58 (247)
.++++|||||||||++|+|+|+..|+.|.|.++|. |..+ ..++ .++.+||.+||.
T Consensus 30 ~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p 109 (345)
T COG1118 30 LVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERP 109 (345)
T ss_pred EEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcccccccCC
Confidence 58999999999999999999999999999999998 5432 2333 356889999985
Q ss_pred --------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (247)
Q Consensus 59 --------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (247)
+.++++.++|+..+++... .++++++ +++|||++. +|++|+||||.. ||...+..+- +.++++.
T Consensus 110 ~~~~~r~rv~elL~lvqL~~la~ryP~--QLSGGQrQRVALARALA~--eP~vLLLDEPf~ALDa~vr~~lr-~wLr~~~ 184 (345)
T COG1118 110 SEAEIRARVEELLRLVQLEGLADRYPA--QLSGGQRQRVALARALAV--EPKVLLLDEPFGALDAKVRKELR-RWLRKLH 184 (345)
T ss_pred ChhhHHHHHHHHHHHhcccchhhcCch--hcChHHHHHHHHHHHhhc--CCCeEeecCCchhhhHHHHHHHH-HHHHHHH
Confidence 7889999999988766543 5677654 999999999 999999999998 9999888877 7777776
Q ss_pred h-CCCeEEEEEecccccccchhHHhhhhHH
Q 025844 128 S-RNFNVCAVYLLDSQFITDVTKFISGCMA 156 (247)
Q Consensus 128 ~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~ 156 (247)
+ .|.++++| +|...+...+++.++.
T Consensus 185 ~~~~~ttvfV----THD~eea~~ladrvvv 210 (345)
T COG1118 185 DRLGVTTVFV----THDQEEALELADRVVV 210 (345)
T ss_pred HhhCceEEEE----eCCHHHHHhhcceEEE
Confidence 5 48888777 4777777777664433
No 67
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.91 E-value=5.4e-24 Score=183.37 Aligned_cols=141 Identities=18% Similarity=0.247 Sum_probs=104.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCC-------CcccChhhhHh-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y-------~~~~~v~e~i~------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 108 (243)
T TIGR02315 29 EFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYK 108 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccc
Confidence 3789999999999999999999999999999999865421 12333 23456666552
Q ss_pred -----------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 025844 59 -----------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (247)
Q Consensus 59 -----------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (247)
+.++++.+++....... ...+++|++ ++||++++. +|+++|+||||+ ||+.++..+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l 184 (243)
T TIGR02315 109 PTWRSLLGRFSEEDKERALSALERVGLADKAYQR--ADQLSGGQQQRVAIARALAQ--QPDLILADEPIASLDPKTSKQV 184 (243)
T ss_pred cchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHH
Confidence 34567778886533222 234666644 899999999 999999999999 999999998
Q ss_pred HHHHHHHHHh-CCCeEEEEEecccccccchhHHhh
Q 025844 119 LRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 119 ~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
. ++++++.+ .+.+++++ +|.......+++
T Consensus 185 ~-~~l~~~~~~~~~tiii~----tH~~~~~~~~~d 214 (243)
T TIGR02315 185 M-DYLKRINKEDGITVIIN----LHQVDLAKKYAD 214 (243)
T ss_pred H-HHHHHHHHHcCCEEEEE----eCCHHHHHHhcC
Confidence 8 88888865 47777665 355554445544
No 68
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=3.7e-24 Score=186.30 Aligned_cols=141 Identities=14% Similarity=0.185 Sum_probs=106.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--CCCCC-------CcccChhhhHh---------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDY-------PVAMDIRELIS--------------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--~~~~y-------~~~~~v~e~i~--------------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++.+++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 107 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLE 107 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHH
Confidence 4789999999999999999999999999999999876521 11222 23356666553
Q ss_pred -HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeE
Q 025844 59 -LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNV 133 (247)
Q Consensus 59 -~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~i 133 (247)
+.++++.+++.+..... ...+++|++ +.||++++. +|+++|+||||+ ||+.++..+. ++++++.+ .|.++
T Consensus 108 ~~~~~l~~~gl~~~~~~~--~~~LSgGq~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~g~tv 182 (255)
T PRK11248 108 IAHQMLKKVGLEGAEKRY--IWQLSGGQRQRVGIARALAA--NPQLLLLDEPFGALDAFTREQMQ-TLLLKLWQETGKQV 182 (255)
T ss_pred HHHHHHHHcCChhHhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHhcCCEE
Confidence 45678888886543322 345666654 899999999 999999999999 9999999998 88888754 57787
Q ss_pred EEEEecccccccchhHHhh
Q 025844 134 CAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 134 i~v~l~d~~~~~d~~~~~s 152 (247)
+++ +|...+...+++
T Consensus 183 iiv----sH~~~~~~~~~d 197 (255)
T PRK11248 183 LLI----THDIEEAVFMAT 197 (255)
T ss_pred EEE----eCCHHHHHHhCC
Confidence 666 355555555555
No 69
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.91 E-value=7.2e-24 Score=180.13 Aligned_cols=141 Identities=16% Similarity=0.181 Sum_probs=103.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-------CcccChhhhHh---------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~--------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+.+++++++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~ 106 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRA 106 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcCch
Confidence 4789999999999999999999999999999999865421 22333 23457777664
Q ss_pred -----HHHHHHHc-CCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 025844 59 -----LEDVMEEL-GLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (247)
Q Consensus 59 -----~~~~l~~~-~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (247)
+.++++.+ ++....... ...+++|++ +.||++++. +|+++|+||||+ ||+.++..+. ++++++++.
T Consensus 107 ~~~~~~~~~l~~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~ 181 (222)
T cd03224 107 KRKARLERVYELFPRLKERRKQL--AGTLSGGEQQMLAIARALMS--RPKLLLLDEPSEGLAPKIVEEIF-EAIRELRDE 181 (222)
T ss_pred hHHHHHHHHHHHHHhhhhhhhCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEECCCcccCCHHHHHHHH-HHHHHHHHC
Confidence 23455555 344322221 234666543 899999999 999999999999 9999999998 888888766
Q ss_pred CCeEEEEEecccccccchhHHhh
Q 025844 130 NFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 130 ~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+.+++++ +|...+...+++
T Consensus 182 ~~tiii~----sH~~~~~~~~~d 200 (222)
T cd03224 182 GVTILLV----EQNARFALEIAD 200 (222)
T ss_pred CCEEEEE----eCCHHHHHHhcc
Confidence 7777666 355554455544
No 70
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=3.4e-24 Score=181.03 Aligned_cols=141 Identities=20% Similarity=0.240 Sum_probs=105.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----CCCCC-------CcccChhhhHh------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----~~~~y-------~~~~~v~e~i~------------ 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 25 e~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~ 104 (211)
T cd03298 25 EITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAE 104 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccccCccHH
Confidence 4689999999999999999999999999999999876421 12222 23456666552
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 025844 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (247)
Q Consensus 59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (247)
+.++++.+++.+..... ...++.|++ +.||++++. +|+++|+|||++ ||+.++..+. ++++++++ .+
T Consensus 105 ~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~ia~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~ 179 (211)
T cd03298 105 DRQAIEVALARVGLAGLEKRL--PGELSGGERQRVALARVLVR--DKPVLLLDEPFAALDPALRAEML-DLVLDLHAETK 179 (211)
T ss_pred HHHHHHHHHHHcCCHHHHhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 45677888886543322 234666543 899999999 999999999999 9999999998 88888865 47
Q ss_pred CeEEEEEecccccccchhHHhh
Q 025844 131 FNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s 152 (247)
.+++++ +|...+...+++
T Consensus 180 ~tii~~----sH~~~~~~~~~d 197 (211)
T cd03298 180 MTVLMV----THQPEDAKRLAQ 197 (211)
T ss_pred CEEEEE----ecCHHHHHhhhC
Confidence 787666 355554444444
No 71
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.91 E-value=6.4e-24 Score=194.13 Aligned_cols=141 Identities=13% Similarity=0.109 Sum_probs=110.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------------CCCCCCcccChhhhHh------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------------~~~~y~~~~~v~e~i~------------ 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ++..+++.+++.+++.
T Consensus 41 e~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~ 120 (375)
T PRK09452 41 EFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAE 120 (375)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHH
Confidence 3689999999999999999999999999999999976421 2333356778888874
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 025844 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (247)
Q Consensus 59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (247)
++++++.+++.+..... ...+++|+ +++|||+|+. +|+++|||||++ ||...+..+. +.++++.+ .|
T Consensus 121 ~~~~~~~~l~~~~l~~~~~~~--p~~LSgGq~QRVaLARaL~~--~P~llLLDEP~s~LD~~~r~~l~-~~L~~l~~~~g 195 (375)
T PRK09452 121 ITPRVMEALRMVQLEEFAQRK--PHQLSGGQQQRVAIARAVVN--KPKVLLLDESLSALDYKLRKQMQ-NELKALQRKLG 195 (375)
T ss_pred HHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHhcC
Confidence 45678888998655444 24566664 4999999999 999999999999 9999999888 88888765 48
Q ss_pred CeEEEEEecccccccchhHHhh
Q 025844 131 FNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s 152 (247)
.++++| +|...+...+++
T Consensus 196 ~tiI~v----THd~~ea~~laD 213 (375)
T PRK09452 196 ITFVFV----THDQEEALTMSD 213 (375)
T ss_pred CEEEEE----eCCHHHHHHhCC
Confidence 888766 355555555555
No 72
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=6.4e-24 Score=179.82 Aligned_cols=141 Identities=17% Similarity=0.203 Sum_probs=104.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC-----------CCCCCC-------CcccChhhhHh------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENFDY-------PVAMDIRELIS------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~-----------~~~~~y-------~~~~~v~e~i~------ 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+.. ...+.| .+..++.+++.
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~ 103 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK 103 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC
Confidence 368999999999999999999999999999999986542 112333 23456766653
Q ss_pred --------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (247)
Q Consensus 59 --------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (247)
+.++++.+++....... ...+++|++ +.||++++. +|+++|+||||+ ||+.+++.+. +++++++
T Consensus 104 ~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~ 178 (214)
T cd03297 104 RNREDRISVDELLDLLGLDHLLNRY--PAQLSGGEKQRVALARALAA--QPELLLLDEPFSALDRALRLQLL-PELKQIK 178 (214)
T ss_pred CHHHHHHHHHHHHHHcCCHhHhhcC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHH
Confidence 45677888886533222 245666544 899999999 999999999999 9999999988 8888886
Q ss_pred hC-CCeEEEEEecccccccchhHHhh
Q 025844 128 SR-NFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 128 ~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++ |.+++++ +|...+...+++
T Consensus 179 ~~~~~tiii~----sH~~~~~~~~~d 200 (214)
T cd03297 179 KNLNIPVIFV----THDLSEAEYLAD 200 (214)
T ss_pred HHcCcEEEEE----ecCHHHHHHhcC
Confidence 54 7777655 355544444444
No 73
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=3.5e-24 Score=180.97 Aligned_cols=139 Identities=21% Similarity=0.318 Sum_probs=103.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC-------CcccChhhhHh------------
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS------------ 58 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y-------~~~~~v~e~i~------------ 58 (247)
+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++.+++.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~ 106 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKE 106 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHH
Confidence 689999999999999999999999999999999976431 12222 23457777653
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCC
Q 025844 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNF 131 (247)
Q Consensus 59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~ 131 (247)
+.++++.+++.+..... ...+++|++ ++||++++. +|+++|+||||+ ||+.++..+. ++++++++ +.
T Consensus 107 ~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~-~~ 180 (211)
T cd03264 107 VKARVDEVLELVNLGDRAKKK--IGSLSGGMRRRVGIAQALVG--DPSILIVDEPTAGLDPEERIRFR-NLLSELGE-DR 180 (211)
T ss_pred HHHHHHHHHHHCCCHHHHhCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHhC-CC
Confidence 34567778886532222 345666654 899999999 999999999999 9999999998 88888865 46
Q ss_pred eEEEEEecccccccchhHHhh
Q 025844 132 NVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 132 ~ii~v~l~d~~~~~d~~~~~s 152 (247)
+++++ +|.......+++
T Consensus 181 tii~v----sH~~~~~~~~~d 197 (211)
T cd03264 181 IVILS----THIVEDVESLCN 197 (211)
T ss_pred EEEEE----cCCHHHHHHhCC
Confidence 76555 355444444444
No 74
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.91 E-value=2.3e-24 Score=182.26 Aligned_cols=141 Identities=18% Similarity=0.358 Sum_probs=102.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC--CCCCCC-C--------cccChhhhHh-------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDY-P--------VAMDIRELIS------------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~--~~~~~y-~--------~~~~v~e~i~------------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++. ...++| + ...++++++.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 105 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRL 105 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhccccccccccCC
Confidence 478999999999999999999999999999999986531 111222 1 1235555442
Q ss_pred -------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (247)
Q Consensus 59 -------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (247)
++++++.+++.+..... ...+++|++ ++||++++. +|+++|+||||+ ||+.++..+. ++++++++
T Consensus 106 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~ 180 (213)
T cd03235 106 SKADKAKVDEALERVGLSELADRQ--IGELSGGQQQRVLLARALVQ--DPDLLLLDEPFAGVDPKTQEDIY-ELLRELRR 180 (213)
T ss_pred CHHHHHHHHHHHHHcCCHHHHhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHh
Confidence 44567778886433222 235666654 899999999 999999999999 9999999998 88888876
Q ss_pred CCCeEEEEEecccccccchhHHhh
Q 025844 129 RNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 129 ~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++.+++++ +|...+...+++
T Consensus 181 ~~~tvi~~----sH~~~~~~~~~d 200 (213)
T cd03235 181 EGMTILVV----THDLGLVLEYFD 200 (213)
T ss_pred cCCEEEEE----eCCHHHHHHhcC
Confidence 67777665 455554445444
No 75
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=9.1e-24 Score=181.66 Aligned_cols=141 Identities=16% Similarity=0.200 Sum_probs=104.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCC-------CcccChhhhHh-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y-------~~~~~v~e~i~------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 107 (241)
T cd03256 28 EFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRR 107 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccc
Confidence 4789999999999999999999999999999999876421 12333 23456666652
Q ss_pred -----------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 025844 59 -----------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (247)
Q Consensus 59 -----------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (247)
+.++++.+++.+..... ...+++|++ ++||++++. +|+++|+||||+ ||+.++..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l 183 (241)
T cd03256 108 STWRSLFGLFPKEEKQRALAALERVGLLDKAYQR--ADQLSGGQQQRVAIARALMQ--QPKLILADEPVASLDPASSRQV 183 (241)
T ss_pred hhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHH
Confidence 34567778886533222 234666543 899999999 999999999999 999999999
Q ss_pred HHHHHHHHHh-CCCeEEEEEecccccccchhHHhh
Q 025844 119 LRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 119 ~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
. ++++++++ .|.+++++ +|...+...+++
T Consensus 184 ~-~~l~~~~~~~~~tii~~----tH~~~~~~~~~d 213 (241)
T cd03256 184 M-DLLKRINREEGITVIVS----LHQVDLAREYAD 213 (241)
T ss_pred H-HHHHHHHHhcCCEEEEE----eCCHHHHHHhCC
Confidence 8 88888865 47787666 455555555544
No 76
>PRK10908 cell division protein FtsE; Provisional
Probab=99.91 E-value=4.9e-24 Score=181.47 Aligned_cols=141 Identities=13% Similarity=0.135 Sum_probs=105.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCC-------CcccChhhhHh-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y-------~~~~~v~e~i~------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.++| .+..++++++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 108 (222)
T PRK10908 29 EMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAG 108 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhcC
Confidence 4689999999999999999999999999999999875421 12333 23456766653
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (247)
Q Consensus 59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (247)
+.++++.+++.+..... ...++.|++ ++||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 109 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~ 183 (222)
T PRK10908 109 ASGDDIRRRVSAALDKVGLLDKAKNF--PIQLSGGEQQRVGIARAVVN--KPAVLLADEPTGNLDDALSEGIL-RLFEEF 183 (222)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhCC--chhCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCcCCHHHHHHHH-HHHHHH
Confidence 34677888886543222 245666544 899999999 999999999999 9999999998 888888
Q ss_pred HhCCCeEEEEEecccccccchhHHhh
Q 025844 127 KSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++.+++++ +|...+...+++
T Consensus 184 ~~~~~tiii~----sH~~~~~~~~~d 205 (222)
T PRK10908 184 NRVGVTVLMA----THDIGLISRRSY 205 (222)
T ss_pred HHCCCEEEEE----eCCHHHHHHhCC
Confidence 7667777666 355544444444
No 77
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.8e-24 Score=190.20 Aligned_cols=141 Identities=16% Similarity=0.201 Sum_probs=108.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-------ccChhhhHh---------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-------AMDIRELIS--------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-------~~~v~e~i~--------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| ++ ..++.+++.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~ 111 (274)
T PRK13647 32 SKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLD 111 (274)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCC
Confidence 3789999999999999999999999999999999976531 22333 11 236666653
Q ss_pred -------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (247)
Q Consensus 59 -------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (247)
+.++++.+++.+..... ...+++|++ +.||++++. +|+++|+||||+ ||+.++..+. ++++++++
T Consensus 112 ~~~~~~~~~~~l~~~~L~~~~~~~--~~~LSgG~~qrv~laraL~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~ 186 (274)
T PRK13647 112 KDEVERRVEEALKAVRMWDFRDKP--PYHLSYGQKKRVAIAGVLAM--DPDVIVLDEPMAYLDPRGQETLM-EILDRLHN 186 (274)
T ss_pred HHHHHHHHHHHHHHCCCHHHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHHH
Confidence 45677888887543333 345666653 899999999 999999999999 9999999998 99988876
Q ss_pred CCCeEEEEEecccccccchhHHhh
Q 025844 129 RNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 129 ~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+|.+++++ +|.+.....+++
T Consensus 187 ~g~tili~----tH~~~~~~~~~d 206 (274)
T PRK13647 187 QGKTVIVA----THDVDLAAEWAD 206 (274)
T ss_pred CCCEEEEE----eCCHHHHHHhCC
Confidence 68888666 466665556665
No 78
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=7e-24 Score=187.58 Aligned_cols=141 Identities=21% Similarity=0.216 Sum_probs=107.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---------CCCCC-Cc-------ccChhhhHh-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-PV-------AMDIRELIS------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---------~~~~y-~~-------~~~v~e~i~------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| ++ ..++++++.
T Consensus 34 e~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~ 113 (287)
T PRK13637 34 EFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLG 113 (287)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHCC
Confidence 3689999999999999999999999999999999976531 22333 11 246777663
Q ss_pred ---------HHHHHHHcCCC--CCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 025844 59 ---------LEDVMEELGLG--PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (247)
Q Consensus 59 ---------~~~~l~~~~L~--~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~ 124 (247)
+.++++.+||. +..... ...+++|+ ++.||++++. +|+++|+||||+ ||+.++..+. ++++
T Consensus 114 ~~~~~~~~~~~~~l~~~gL~~~~~~~~~--~~~LSgGq~qrv~iAraL~~--~P~llllDEPt~gLD~~~~~~l~-~~l~ 188 (287)
T PRK13637 114 LSEEEIENRVKRAMNIVGLDYEDYKDKS--PFELSGGQKRRVAIAGVVAM--EPKILILDEPTAGLDPKGRDEIL-NKIK 188 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCchhhccCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECCccCCCHHHHHHHH-HHHH
Confidence 46788889996 222222 24566664 3899999999 999999999999 9999999998 9999
Q ss_pred HHHhC-CCeEEEEEecccccccchhHHhh
Q 025844 125 HLKSR-NFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 125 ~l~~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+++++ |.+++++ +|.+.+...+++
T Consensus 189 ~l~~~~g~tvi~v----tHd~~~~~~~~d 213 (287)
T PRK13637 189 ELHKEYNMTIILV----SHSMEDVAKLAD 213 (287)
T ss_pred HHHHhcCCEEEEE----eCCHHHHHHhCC
Confidence 98764 8888766 466555555555
No 79
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.91 E-value=2.9e-24 Score=182.48 Aligned_cols=140 Identities=16% Similarity=0.208 Sum_probs=104.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC-------CcccChhhhHh-----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y-------~~~~~v~e~i~----------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| .+..++++++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~ 108 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKS 108 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHH
Confidence 3689999999999999999999999999999999876421 11222 23456766653
Q ss_pred -----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 025844 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (247)
Q Consensus 59 -----~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (247)
+.++++.+++.+..... ...++.|+ +++||++++. +|+++|+||||+ ||+.++..+. ++++++++ +
T Consensus 109 ~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~-~ 182 (220)
T cd03263 109 EIKEEVELLLRVLGLTDKANKR--ARTLSGGMKRKLSLAIALIG--GPSVLLLDEPTSGLDPASRRAIW-DLILEVRK-G 182 (220)
T ss_pred HHHHHHHHHHHHcCCHHHHhCh--hhhCCHHHHHHHHHHHHHhc--CCCEEEECCCCCCCCHHHHHHHH-HHHHHHhc-C
Confidence 34677788886543222 34566654 3899999999 999999999999 9999999998 88888865 5
Q ss_pred CeEEEEEecccccccchhHHhh
Q 025844 131 FNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s 152 (247)
.+++++ +|.......+++
T Consensus 183 ~tii~~----sH~~~~~~~~~d 200 (220)
T cd03263 183 RSIILT----THSMDEAEALCD 200 (220)
T ss_pred CEEEEE----cCCHHHHHHhcC
Confidence 666555 465554445544
No 80
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.91 E-value=9.9e-24 Score=181.61 Aligned_cols=141 Identities=19% Similarity=0.243 Sum_probs=106.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---------CCCCC-------CcccChhhhHh--------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-------PVAMDIRELIS-------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---------~~~~y-------~~~~~v~e~i~-------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|+++|.++.. +.+.| .+..++.+++.
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~ 107 (240)
T PRK09493 28 EVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRG 107 (240)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcC
Confidence 3789999999999999999999999999999999976431 12333 23456666543
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (247)
Q Consensus 59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (247)
+.++++.+|+.+..... ...+++|++ +.||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 108 ~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~ 182 (240)
T PRK09493 108 ASKEEAEKQARELLAKVGLAERAHHY--PSELSGGQQQRVAIARALAV--KPKLMLFDEPTSALDPELRHEVL-KVMQDL 182 (240)
T ss_pred CCHHHHHHHHHHHHHHcCChHHHhcC--hhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHH
Confidence 35677888886543322 235666543 899999999 999999999999 9999999998 888888
Q ss_pred HhCCCeEEEEEecccccccchhHHhh
Q 025844 127 KSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++.+++++ +|...+...+++
T Consensus 183 ~~~~~tiii~----sH~~~~~~~~~d 204 (240)
T PRK09493 183 AEEGMTMVIV----THEIGFAEKVAS 204 (240)
T ss_pred HHcCCEEEEE----eCCHHHHHHhCC
Confidence 7667787665 465555555554
No 81
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=8.1e-24 Score=185.49 Aligned_cols=141 Identities=18% Similarity=0.194 Sum_probs=106.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhHh------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------~~~~y-------~~~~~v~e~i~------ 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| .+..++++++.
T Consensus 51 e~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 130 (269)
T cd03294 51 EIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ 130 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc
Confidence 4789999999999999999999999999999999865421 12333 23457777663
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
+.++++.+++.+..... ...+++|++ ++||++++. +|+++||||||+ ||+.++..+. +++++
T Consensus 131 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~Gq~qrv~lAral~~--~p~illLDEPt~~LD~~~~~~l~-~~l~~ 205 (269)
T cd03294 131 GVPRAEREERAAEALELVGLEGWEHKY--PDELSGGMQQRVGLARALAV--DPDILLMDEAFSALDPLIRREMQ-DELLR 205 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCHhHhhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-HHHHH
Confidence 34677888886543322 234666543 899999999 999999999999 9999999998 88888
Q ss_pred HHh-CCCeEEEEEecccccccchhHHhh
Q 025844 126 LKS-RNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 126 l~~-~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+.+ .|.+++++ +|...+...+++
T Consensus 206 ~~~~~g~tiii~----tH~~~~~~~~~d 229 (269)
T cd03294 206 LQAELQKTIVFI----THDLDEALRLGD 229 (269)
T ss_pred HHHhcCCEEEEE----eCCHHHHHHhcC
Confidence 865 47777655 465555555544
No 82
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.91 E-value=2.5e-24 Score=187.65 Aligned_cols=141 Identities=17% Similarity=0.176 Sum_probs=106.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC--CCCCCC-------CcccChhhhHh----------HHHHH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDY-------PVAMDIRELIS----------LEDVM 63 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~--~~~~~y-------~~~~~v~e~i~----------~~~~l 63 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+.. ...+.| .+..++++++. +.+++
T Consensus 39 e~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l 118 (257)
T PRK11247 39 QFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQAL 118 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHH
Confidence 378999999999999999999999999999999875431 112222 33467777764 45678
Q ss_pred HHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEEEec
Q 025844 64 EELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLL 139 (247)
Q Consensus 64 ~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v~l~ 139 (247)
+.+++.+..... ...+++|++ +.||++++. +|+++|+||||+ ||+.++..+. ++++++.+ .+.+++++
T Consensus 119 ~~~gl~~~~~~~--~~~LSgGqkqrl~laraL~~--~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~~~tviiv--- 190 (257)
T PRK11247 119 AAVGLADRANEW--PAALSGGQKQRVALARALIH--RPGLLLLDEPLGALDALTRIEMQ-DLIESLWQQHGFTVLLV--- 190 (257)
T ss_pred HHcCChhHhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHHcCCEEEEE---
Confidence 889987643332 245666654 899999999 999999999999 9999999998 88888754 47787666
Q ss_pred ccccccchhHHhh
Q 025844 140 DSQFITDVTKFIS 152 (247)
Q Consensus 140 d~~~~~d~~~~~s 152 (247)
+|...+...+++
T Consensus 191 -sHd~~~~~~~~d 202 (257)
T PRK11247 191 -THDVSEAVAMAD 202 (257)
T ss_pred -eCCHHHHHHhCC
Confidence 455555555555
No 83
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.3e-24 Score=193.94 Aligned_cols=141 Identities=21% Similarity=0.210 Sum_probs=107.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC-------------------------------CCCCCC-Cc-
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------------------------------AENFDY-PV- 49 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~-------------------------------~~~~~y-~~- 49 (247)
-+++|+||||||||||+++|+|+++|++|+|+++|.+.. ...++| ++
T Consensus 34 e~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~ 113 (305)
T PRK13651 34 EFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQF 113 (305)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEeeC
Confidence 368999999999999999999999999999999875431 112333 22
Q ss_pred ------ccChhhhHh----------------HHHHHHHcCCC-CCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEE
Q 025844 50 ------AMDIRELIS----------------LEDVMEELGLG-PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVF 104 (247)
Q Consensus 50 ------~~~v~e~i~----------------~~~~l~~~~L~-~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lil 104 (247)
..++++++. +.++++.+||. +..... ...+++|++ ++||++++. +|+++||
T Consensus 114 ~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--~~~LSgGqkqrvalA~aL~~--~P~lLlL 189 (305)
T PRK13651 114 AEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRS--PFELSGGQKRRVALAGILAM--EPDFLVF 189 (305)
T ss_pred cccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEE
Confidence 236776663 56788899996 333222 345666654 899999999 9999999
Q ss_pred eCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 105 DCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 105 DEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
||||+ ||+.++..+. ++++++++.|.+++++ +|.+.....+++
T Consensus 190 DEPt~~LD~~~~~~l~-~~l~~l~~~g~tiiiv----tHd~~~~~~~ad 233 (305)
T PRK13651 190 DEPTAGLDPQGVKEIL-EIFDNLNKQGKTIILV----THDLDNVLEWTK 233 (305)
T ss_pred eCCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEE----eeCHHHHHHhCC
Confidence 99999 9999999988 8899987678888766 366555556655
No 84
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.4e-23 Score=180.88 Aligned_cols=141 Identities=14% Similarity=0.226 Sum_probs=104.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-------CcccChhhhHh---------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~--------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++.+++.
T Consensus 30 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~ 109 (241)
T PRK10895 30 EIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDL 109 (241)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccccc
Confidence 4789999999999999999999999999999999866421 12333 22346665542
Q ss_pred --------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (247)
Q Consensus 59 --------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (247)
+.++++.+++....... ...+++|++ ++||++++. +|+++|+||||+ ||+.++..+. ++++.++
T Consensus 110 ~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~ 184 (241)
T PRK10895 110 SAEQREDRANELMEEFHIEHLRDSM--GQSLSGGERRRVEIARALAA--NPKFILLDEPFAGVDPISVIDIK-RIIEHLR 184 (241)
T ss_pred CHHHHHHHHHHHHHHcCCHHHhhcc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHH
Confidence 45567777776532222 245666654 899999999 999999999999 9999999988 8888887
Q ss_pred hCCCeEEEEEecccccccchhHHhh
Q 025844 128 SRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++|.+++++ +|...+...+++
T Consensus 185 ~~g~tiii~----sH~~~~~~~~~d 205 (241)
T PRK10895 185 DSGLGVLIT----DHNVRETLAVCE 205 (241)
T ss_pred hcCCEEEEE----EcCHHHHHHhcC
Confidence 667787666 355544445444
No 85
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.91 E-value=1.1e-23 Score=177.33 Aligned_cols=129 Identities=13% Similarity=0.077 Sum_probs=100.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCC-------CCcccChhhhHh-----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFD-------YPVAMDIRELIS----------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~-------y~~~~~v~e~i~----------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... +.+. +.+..++.+++.
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~ 107 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDD 107 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcCccHH
Confidence 3689999999999999999999999999999999876421 1122 233457777653
Q ss_pred --HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeE
Q 025844 59 --LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (247)
Q Consensus 59 --~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~i 133 (247)
++++++.+|+.+..... ...++.|++ ++||++++. +|+++|+||||+ ||+.++..+. ++++++++.+.++
T Consensus 108 ~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~ti 182 (204)
T PRK13538 108 EALWEALAQVGLAGFEDVP--VRQLSAGQQRRVALARLWLT--RAPLWILDEPFTAIDKQGVARLE-ALLAQHAEQGGMV 182 (204)
T ss_pred HHHHHHHHHcCCHHHhhCC--hhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHCCCEE
Confidence 45678888886543222 345666543 899999999 999999999999 9999999998 8888886667777
Q ss_pred EEE
Q 025844 134 CAV 136 (247)
Q Consensus 134 i~v 136 (247)
+++
T Consensus 183 ii~ 185 (204)
T PRK13538 183 ILT 185 (204)
T ss_pred EEE
Confidence 666
No 86
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=8.1e-24 Score=187.15 Aligned_cols=143 Identities=14% Similarity=0.155 Sum_probs=108.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------CCCCC-Cc-------ccChhhhHh-----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV-------AMDIRELIS----- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------~~~~y-~~-------~~~v~e~i~----- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++.+++.
T Consensus 34 e~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~ 113 (287)
T PRK13641 34 SFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKN 113 (287)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHH
Confidence 3689999999999999999999999999999999976421 12333 11 246666653
Q ss_pred -----------HHHHHHHcCCC-CCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 025844 59 -----------LEDVMEELGLG-PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (247)
Q Consensus 59 -----------~~~~l~~~~L~-~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (247)
++++++.+++. ...... ...+++|++ ++||++++. +|++|||||||+ ||+.++..+. +++
T Consensus 114 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--~~~LSgGq~qrl~laral~~--~p~lLlLDEPt~gLD~~~~~~l~-~~l 188 (287)
T PRK13641 114 FGFSEDEAKEKALKWLKKVGLSEDLISKS--PFELSGGQMRRVAIAGVMAY--EPEILCLDEPAAGLDPEGRKEMM-QLF 188 (287)
T ss_pred cCCCHHHHHHHHHHHHHHcCCChhHhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECCCCCCCHHHHHHHH-HHH
Confidence 46678888886 333222 235666654 899999999 999999999999 9999999988 888
Q ss_pred HHHHhCCCeEEEEEecccccccchhHHhhhh
Q 025844 124 DHLKSRNFNVCAVYLLDSQFITDVTKFISGC 154 (247)
Q Consensus 124 ~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~ 154 (247)
+++++.|.+++++ +|.+.+...+++.+
T Consensus 189 ~~l~~~g~tvliv----sH~~~~~~~~~d~v 215 (287)
T PRK13641 189 KDYQKAGHTVILV----THNMDDVAEYADDV 215 (287)
T ss_pred HHHHhCCCEEEEE----eCCHHHHHHhCCEE
Confidence 9887668888665 46666666666633
No 87
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.91 E-value=1.7e-23 Score=181.17 Aligned_cols=141 Identities=17% Similarity=0.219 Sum_probs=104.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---------------CCCCC-------CcccChhhhHh--
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDY-------PVAMDIRELIS-- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---------------~~~~y-------~~~~~v~e~i~-- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| .+..++.+++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 109 (250)
T PRK11264 30 EVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG 109 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHH
Confidence 4689999999999999999999999999999998865321 12233 23456766652
Q ss_pred ---------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844 59 ---------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (247)
Q Consensus 59 ---------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (247)
+.++++.+|+.+..... ...+++|++ +.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~Gq~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~- 184 (250)
T PRK11264 110 PVIVKGEPKEEATARARELLAKVGLAGKETSY--PRRLSGGQQQRVAIARALAM--RPEVILFDEPTSALDPELVGEVL- 184 (250)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCcchhhCC--hhhCChHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence 34567778886543222 245666654 899999999 999999999999 9999999998
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++++.++|.+++++ +|...+...+++
T Consensus 185 ~~l~~~~~~~~tvi~~----tH~~~~~~~~~d 212 (250)
T PRK11264 185 NTIRQLAQEKRTMVIV----THEMSFARDVAD 212 (250)
T ss_pred HHHHHHHhcCCEEEEE----eCCHHHHHHhcC
Confidence 8888887667777665 355544444444
No 88
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.5e-23 Score=192.91 Aligned_cols=143 Identities=19% Similarity=0.217 Sum_probs=109.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhHh------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------~~~~y-------~~~~~v~e~i~------ 58 (247)
-+++|+||||||||||+++|+|+++|++|+|+++|.++.. ..++| ++..|+++++.
T Consensus 55 ei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~ 134 (400)
T PRK10070 55 EIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA 134 (400)
T ss_pred CEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999999999999999999976421 13333 33567887764
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
+.++++.+++.+..... ...+++|++ +.||++++. +|++||+||||+ ||+.++..+. +++++
T Consensus 135 ~~~~~~~~~~~~e~L~~~gL~~~~~~~--~~~LSgGq~QRv~LArAL~~--~P~iLLLDEPts~LD~~~r~~l~-~~L~~ 209 (400)
T PRK10070 135 GINAEERREKALDALRQVGLENYAHSY--PDELSGGMRQRVGLARALAI--NPDILLMDEAFSALDPLIRTEMQ-DELVK 209 (400)
T ss_pred CCCHHHHHHHHHHHHHHcCCChhhhcC--cccCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHH-HHHHH
Confidence 34678888997654333 245666654 899999999 999999999999 9999999998 88888
Q ss_pred HHh-CCCeEEEEEecccccccchhHHhhhh
Q 025844 126 LKS-RNFNVCAVYLLDSQFITDVTKFISGC 154 (247)
Q Consensus 126 l~~-~~~~ii~v~l~d~~~~~d~~~~~s~~ 154 (247)
+++ .+.+++++ +|.+.+...+++.+
T Consensus 210 l~~~~g~TIIiv----THd~~~~~~~~Dri 235 (400)
T PRK10070 210 LQAKHQRTIVFI----SHDLDEAMRIGDRI 235 (400)
T ss_pred HHHHCCCeEEEE----ECCHHHHHHhCCEE
Confidence 864 47888666 46555555555543
No 89
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.91 E-value=1.5e-23 Score=183.73 Aligned_cols=141 Identities=17% Similarity=0.241 Sum_probs=105.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC----------CCCCCC-------CcccChhhhHh-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----------AENFDY-------PVAMDIRELIS------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~----------~~~~~y-------~~~~~v~e~i~------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+.. ...+.| .+..++.+++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~ 113 (269)
T PRK11831 34 KITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT 113 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc
Confidence 378999999999999999999999999999999986542 112333 23457777653
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
+.++++.+++.+..... ...+++|++ ++||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 114 ~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~ 188 (269)
T PRK11831 114 QLPAPLLHSTVMMKLEAVGLRGAAKLM--PSELSGGMARRAALARAIAL--EPDLIMFDEPFVGQDPITMGVLV-KLISE 188 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-HHHHH
Confidence 23467778886543332 345676654 899999999 999999999999 9999999998 88888
Q ss_pred HHhC-CCeEEEEEecccccccchhHHhh
Q 025844 126 LKSR-NFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 126 l~~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++ |.+++++ +|...+...+++
T Consensus 189 ~~~~~g~tiiiv----sH~~~~~~~~~d 212 (269)
T PRK11831 189 LNSALGVTCVVV----SHDVPEVLSIAD 212 (269)
T ss_pred HHHhcCcEEEEE----ecCHHHHHHhhC
Confidence 8654 7787666 355554445544
No 90
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.3e-23 Score=182.25 Aligned_cols=141 Identities=16% Similarity=0.153 Sum_probs=104.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-------CcccChhhhHh---------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~--------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++.+++.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~ 111 (255)
T PRK11300 32 EIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKT 111 (255)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccc
Confidence 4789999999999999999999999999999999976421 11222 22456666543
Q ss_pred ----------------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHH
Q 025844 59 ----------------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELF 113 (247)
Q Consensus 59 ----------------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~ 113 (247)
+.++++.+|+.+..... ...+++|++ +.||++++. +|+++|+||||+ ||+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~ 187 (255)
T PRK11300 112 GLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQ--AGNLAYGQQRRLEIARCMVT--QPEILMLDEPAAGLNPK 187 (255)
T ss_pred hhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCccCCCHH
Confidence 23456677776533222 234666543 899999999 999999999999 9999
Q ss_pred hHHHHHHHHHHHHHhC-CCeEEEEEecccccccchhHHhh
Q 025844 114 THVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 114 ~~~~~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++..+. +++.+++++ |.+++++ +|...+...+++
T Consensus 188 ~~~~l~-~~L~~~~~~~~~tii~~----sH~~~~~~~~~d 222 (255)
T PRK11300 188 ETKELD-ELIAELRNEHNVTVLLI----EHDMKLVMGISD 222 (255)
T ss_pred HHHHHH-HHHHHHHhhcCCEEEEE----eCCHHHHHHhCC
Confidence 999998 888888764 7788666 466555555554
No 91
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.91 E-value=1.1e-23 Score=191.41 Aligned_cols=143 Identities=17% Similarity=0.236 Sum_probs=109.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC-----------CCCCCC-------CcccChhhhHh------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENFDY-------PVAMDIRELIS------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~-----------~~~~~y-------~~~~~v~e~i~------ 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+.. ...++| ++.+++++++.
T Consensus 24 ei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~ 103 (354)
T TIGR02142 24 GVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA 103 (354)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhcc
Confidence 478999999999999999999999999999999986542 112223 33567887764
Q ss_pred --------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (247)
Q Consensus 59 --------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (247)
++++++.+++.+..... ...+++|++ ++||++++. +|+++|||||++ ||+.++..+. +++++++
T Consensus 104 ~~~~~~~~~~~~l~~~gL~~~~~~~--~~~LSgGqkqRvalAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~L~~l~ 178 (354)
T TIGR02142 104 RPSERRISFERVIELLGIGHLLGRL--PGRLSGGEKQRVAIGRALLS--SPRLLLMDEPLAALDDPRKYEIL-PYLERLH 178 (354)
T ss_pred ChhHHHHHHHHHHHHcCChhHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCCcCCCHHHHHHHH-HHHHHHH
Confidence 45678888987654433 245666654 999999999 999999999999 9999999998 8888886
Q ss_pred hC-CCeEEEEEecccccccchhHHhhhh
Q 025844 128 SR-NFNVCAVYLLDSQFITDVTKFISGC 154 (247)
Q Consensus 128 ~~-~~~ii~v~l~d~~~~~d~~~~~s~~ 154 (247)
++ |.+++++ +|...+...+++.+
T Consensus 179 ~~~g~tiiiv----tH~~~~~~~~~d~i 202 (354)
T TIGR02142 179 AEFGIPILYV----SHSLQEVLRLADRV 202 (354)
T ss_pred HhcCCEEEEE----ecCHHHHHHhCCEE
Confidence 64 7777666 45555555555533
No 92
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.91 E-value=5.3e-24 Score=181.39 Aligned_cols=141 Identities=15% Similarity=0.208 Sum_probs=107.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---CCCCC-------CcccChhhhHh------------HH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---ENFDY-------PVAMDIRELIS------------LE 60 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---~~~~y-------~~~~~v~e~i~------------~~ 60 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++. +.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 106 (223)
T TIGR03740 27 SVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRID 106 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHHcCCCHHHHH
Confidence 4789999999999999999999999999999999865421 12222 23457777764 45
Q ss_pred HHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025844 61 DVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (247)
Q Consensus 61 ~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (247)
++++.+++.+..... ...+++|++ +.+|++++. +|+++|+|||++ ||+.++..+. +++++++++|.+++++
T Consensus 107 ~~l~~~~l~~~~~~~--~~~LS~G~~~rv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~L~~~~~~~~tiii~- 180 (223)
T TIGR03740 107 EVLNIVDLTNTGKKK--AKQFSLGMKQRLGIAIALLN--HPKLLILDEPTNGLDPIGIQELR-ELIRSFPEQGITVILS- 180 (223)
T ss_pred HHHHHcCCcHHHhhh--HhhCCHHHHHHHHHHHHHhc--CCCEEEECCCccCCCHHHHHHHH-HHHHHHHHCCCEEEEE-
Confidence 678888887643332 345666543 899999999 999999999999 9999999998 8888887667777655
Q ss_pred ecccccccchhHHhh
Q 025844 138 LLDSQFITDVTKFIS 152 (247)
Q Consensus 138 l~d~~~~~d~~~~~s 152 (247)
+|...+...+++
T Consensus 181 ---sH~~~~~~~~~d 192 (223)
T TIGR03740 181 ---SHILSEVQQLAD 192 (223)
T ss_pred ---cCCHHHHHHhcC
Confidence 455555555555
No 93
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.91 E-value=1.3e-23 Score=178.21 Aligned_cols=141 Identities=15% Similarity=0.087 Sum_probs=106.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----CCCCC-------CcccChhhhHh-------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS------------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----~~~~y-------~~~~~v~e~i~------------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++.+++.
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~ 117 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQM 117 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHH
Confidence 3689999999999999999999999999999999875431 12332 23457777653
Q ss_pred HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEE
Q 025844 59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (247)
Q Consensus 59 ~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~ 135 (247)
++++++.+++.+..... ...+++|++ +++|++++. +|+++|+|||++ ||+.+++.+. ++++++++++.++++
T Consensus 118 ~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii 192 (214)
T PRK13543 118 PGSALAIVGLAGYEDTL--VRQLSAGQKKRLALARLWLS--PAPLWLLDEPYANLDLEGITLVN-RMISAHLRGGGAALV 192 (214)
T ss_pred HHHHHHHcCChhhccCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEE
Confidence 35677788886543332 245666543 899999999 999999999999 9999999888 888888777777766
Q ss_pred EEecccccccchhHHhh
Q 025844 136 VYLLDSQFITDVTKFIS 152 (247)
Q Consensus 136 v~l~d~~~~~d~~~~~s 152 (247)
+ +|...+...+++
T Consensus 193 ~----sH~~~~~~~~~~ 205 (214)
T PRK13543 193 T----THGAYAAPPVRT 205 (214)
T ss_pred E----ecChhhhhhhcc
Confidence 5 466655555554
No 94
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.4e-23 Score=180.09 Aligned_cols=129 Identities=15% Similarity=0.164 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhHh------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------~~~~y-------~~~~~v~e~i~------ 58 (247)
-+++|+||||||||||+++|+|+++|++|+|+++|.++.. ..++| .+..++++++.
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 115 (233)
T PRK11629 36 EMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG 115 (233)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999999999999999999976421 22333 23457777653
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
+.++++.+|+.+..... ...+++|++ ++||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 116 ~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgG~~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~ 190 (233)
T PRK11629 116 KKKPAEINSRALEMLAAVGLEHRANHR--PSELSGGERQRVAIARALVN--NPRLVLADEPTGNLDARNADSIF-QLLGE 190 (233)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHH
Confidence 45678888887543332 245666654 899999999 999999999999 9999999998 88888
Q ss_pred HHh-CCCeEEEE
Q 025844 126 LKS-RNFNVCAV 136 (247)
Q Consensus 126 l~~-~~~~ii~v 136 (247)
+++ .|.+++++
T Consensus 191 ~~~~~g~tvii~ 202 (233)
T PRK11629 191 LNRLQGTAFLVV 202 (233)
T ss_pred HHHhCCCEEEEE
Confidence 865 47788666
No 95
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.3e-24 Score=192.40 Aligned_cols=141 Identities=16% Similarity=0.205 Sum_probs=106.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------CCCCC-Cc-------ccChhhhHh-----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV-------AMDIRELIS----- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------~~~~y-~~-------~~~v~e~i~----- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|+++|.++.. ..++| ++ ..++.+++.
T Consensus 33 e~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~ 112 (288)
T PRK13643 33 SYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQN 112 (288)
T ss_pred CEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHH
Confidence 3689999999999999999999999999999999976521 12333 11 136666653
Q ss_pred -----------HHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 025844 59 -----------LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (247)
Q Consensus 59 -----------~~~~l~~~~L~~-~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (247)
+.++++.+++.+ ..... ...+++|++ ++||++++. +|+++||||||+ ||+.++..+. +++
T Consensus 113 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~--~~~LSgGqkqrvaiA~aL~~--~p~illLDEPt~gLD~~~~~~l~-~~l 187 (288)
T PRK13643 113 FGIPKEKAEKIAAEKLEMVGLADEFWEKS--PFELSGGQMRRVAIAGILAM--EPEVLVLDEPTAGLDPKARIEMM-QLF 187 (288)
T ss_pred cCCCHHHHHHHHHHHHHHcCCChhhccCC--cccCCHHHHHHHHHHHHHHh--CCCEEEEECCccCCCHHHHHHHH-HHH
Confidence 456778888853 32222 245666543 999999999 999999999999 9999999998 889
Q ss_pred HHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 124 DHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 124 ~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++++|.+|+++ +|.+.+...+++
T Consensus 188 ~~l~~~g~til~v----tHd~~~~~~~~d 212 (288)
T PRK13643 188 ESIHQSGQTVVLV----THLMDDVADYAD 212 (288)
T ss_pred HHHHHCCCEEEEE----ecCHHHHHHhCC
Confidence 9987678888766 466655556655
No 96
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.91 E-value=1.9e-23 Score=174.96 Aligned_cols=129 Identities=19% Similarity=0.139 Sum_probs=100.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC-------CcccChhhhHh-----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y-------~~~~~v~e~i~----------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++.+++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~ 106 (198)
T TIGR01189 27 EALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQR 106 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcCCcHH
Confidence 4689999999999999999999999999999999876421 12222 23467777653
Q ss_pred -HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEE
Q 025844 59 -LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC 134 (247)
Q Consensus 59 -~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii 134 (247)
+.++++.+++.+..... ...+++|++ ++||++++. +|+++++||||+ ||+.++..+. +++++++++|.+++
T Consensus 107 ~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii 181 (198)
T TIGR01189 107 TIEDALAAVGLTGFEDLP--AAQLSAGQQRRLALARLWLS--RAPLWILDEPTTALDKAGVALLA-GLLRAHLARGGIVL 181 (198)
T ss_pred HHHHHHHHcCCHHHhcCC--hhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCCCEEE
Confidence 45677788887543332 345666654 899999999 999999999999 9999999888 88888866677776
Q ss_pred EE
Q 025844 135 AV 136 (247)
Q Consensus 135 ~v 136 (247)
++
T Consensus 182 ~~ 183 (198)
T TIGR01189 182 LT 183 (198)
T ss_pred EE
Confidence 66
No 97
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.91 E-value=9.5e-24 Score=179.38 Aligned_cols=129 Identities=16% Similarity=0.152 Sum_probs=100.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhHh------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------~~~~y-------~~~~~v~e~i~------ 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 32 ~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~ 111 (221)
T TIGR02211 32 EIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG 111 (221)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc
Confidence 4789999999999999999999999999999999876421 22333 23456776653
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
+.++++.+|+.+..... ...+++|++ +.||++++. +|+++||||||+ ||+.++..+. +++++
T Consensus 112 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~ 186 (221)
T TIGR02211 112 KKSVKEAKERAYEMLEKVGLEHRINHR--PSELSGGERQRVAIARALVN--QPSLVLADEPTGNLDNNNAKIIF-DLMLE 186 (221)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhC--CCCEEEEeCCCCcCCHHHHHHHH-HHHHH
Confidence 34677888887543333 245666654 899999999 999999999999 9999999998 88888
Q ss_pred HHh-CCCeEEEE
Q 025844 126 LKS-RNFNVCAV 136 (247)
Q Consensus 126 l~~-~~~~ii~v 136 (247)
+++ .+.+++++
T Consensus 187 ~~~~~~~tii~~ 198 (221)
T TIGR02211 187 LNRELNTSFLVV 198 (221)
T ss_pred HHHhcCCEEEEE
Confidence 865 47777666
No 98
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.91 E-value=2.1e-23 Score=179.20 Aligned_cols=129 Identities=19% Similarity=0.267 Sum_probs=99.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC-------CcccChhhhHh-----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y-------~~~~~v~e~i~----------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~ 107 (236)
T TIGR03864 28 EFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRA 107 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHH
Confidence 3689999999999999999999999999999999875421 12223 23456666653
Q ss_pred -----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-C
Q 025844 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-R 129 (247)
Q Consensus 59 -----~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~ 129 (247)
+.++++.+|+.+..... ...+++|+ +++||++++. +|+++|+|||++ ||+.++..+. ++++++++ .
T Consensus 108 ~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrl~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~ 182 (236)
T TIGR03864 108 EARERIAALLARLGLAERADDK--VRELNGGHRRRVEIARALLH--RPALLLLDEPTVGLDPASRAAIV-AHVRALCRDQ 182 (236)
T ss_pred HHHHHHHHHHHHcCChhhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCccCCCHHHHHHHH-HHHHHHHHhC
Confidence 35677888887543333 24566654 3899999999 999999999999 9999999998 88888864 5
Q ss_pred CCeEEEE
Q 025844 130 NFNVCAV 136 (247)
Q Consensus 130 ~~~ii~v 136 (247)
|.+++++
T Consensus 183 ~~tiii~ 189 (236)
T TIGR03864 183 GLSVLWA 189 (236)
T ss_pred CCEEEEE
Confidence 7777666
No 99
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.3e-23 Score=190.79 Aligned_cols=141 Identities=14% Similarity=0.224 Sum_probs=109.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC-----------CCCCCC-------CcccChhhhHh------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENFDY-------PVAMDIRELIS------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~-----------~~~~~y-------~~~~~v~e~i~------ 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+.. ...++| .+.+++++++.
T Consensus 25 e~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~ 104 (352)
T PRK11144 25 GITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKS 104 (352)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhh
Confidence 378999999999999999999999999999999986542 122333 34568888774
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-C
Q 025844 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N 130 (247)
Q Consensus 59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~ 130 (247)
++++++.+++.+..... ...+++|+ +++||++++. +|+++|||||++ ||+.++..+. ++++++.++ +
T Consensus 105 ~~~~~~~~l~~~gl~~~~~~~--~~~LSgGq~qRvalaraL~~--~p~llLLDEPts~LD~~~~~~l~-~~L~~l~~~~g 179 (352)
T PRK11144 105 MVAQFDKIVALLGIEPLLDRY--PGSLSGGEKQRVAIGRALLT--APELLLMDEPLASLDLPRKRELL-PYLERLAREIN 179 (352)
T ss_pred hHHHHHHHHHHcCCchhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 56788899997654333 24566664 4999999999 999999999999 9999999988 888888654 7
Q ss_pred CeEEEEEecccccccchhHHhh
Q 025844 131 FNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s 152 (247)
.+++++ +|...+...+++
T Consensus 180 ~tii~v----THd~~~~~~~~d 197 (352)
T PRK11144 180 IPILYV----SHSLDEILRLAD 197 (352)
T ss_pred CeEEEE----ecCHHHHHHhCC
Confidence 787666 455555555555
No 100
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.1e-23 Score=190.94 Aligned_cols=142 Identities=13% Similarity=0.119 Sum_probs=110.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------------CCCCCCcccChhhhHh------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------------~~~~y~~~~~v~e~i~------------ 58 (247)
-+++|+||||||||||+++|+|+.+|++|+|.++|.+... ++..+++.+|+.|++.
T Consensus 46 e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~ 125 (377)
T PRK11607 46 EIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAE 125 (377)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHH
Confidence 3689999999999999999999999999999999976421 2223355778888875
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 025844 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (247)
Q Consensus 59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (247)
+.++++.+++.+..... ...+++|+ +++|||+++. +|++||||||++ ||...+..+. +.++++.+ .|
T Consensus 126 ~~~~v~~~l~~l~L~~~~~~~--~~~LSgGq~QRVaLARAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g 200 (377)
T PRK11607 126 IASRVNEMLGLVHMQEFAKRK--PHQLSGGQRQRVALARSLAK--RPKLLLLDEPMGALDKKLRDRMQ-LEVVDILERVG 200 (377)
T ss_pred HHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 45778888998765444 24566664 4999999999 999999999999 9999999888 66666644 57
Q ss_pred CeEEEEEecccccccchhHHhhh
Q 025844 131 FNVCAVYLLDSQFITDVTKFISG 153 (247)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s~ 153 (247)
.++++| +|...+...+++.
T Consensus 201 ~tii~v----THd~~ea~~laDr 219 (377)
T PRK11607 201 VTCVMV----THDQEEAMTMAGR 219 (377)
T ss_pred CEEEEE----cCCHHHHHHhCCE
Confidence 888666 4666665566553
No 101
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.91 E-value=2.5e-23 Score=174.54 Aligned_cols=129 Identities=10% Similarity=0.075 Sum_probs=101.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC-------CcccChhhhHh-----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y-------~~~~~v~e~i~----------- 58 (247)
-+++|+||||||||||+++|+|+.+|++|+|+++|.+... +.+.| .+..++++++.
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~ 107 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVG 107 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcCcchHH
Confidence 4689999999999999999999999999999999976531 12222 24567877764
Q ss_pred HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEE
Q 025844 59 LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (247)
Q Consensus 59 ~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~ 135 (247)
+.++++.+++....... ...++.|. ++.||++++. +|+++|+|||++ ||+.++..+. ++++++++.+.++++
T Consensus 108 ~~~~l~~~~l~~~~~~~--~~~LS~G~~~rv~laral~~--~p~~lilDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii 182 (200)
T PRK13540 108 ITELCRLFSLEHLIDYP--CGLLSSGQKRQVALLRLWMS--KAKLWLLDEPLVALDELSLLTII-TKIQEHRAKGGAVLL 182 (200)
T ss_pred HHHHHHHcCCchhhhCC--hhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCCcccCHHHHHHHH-HHHHHHHHcCCEEEE
Confidence 46688888886533222 23466554 3899999999 999999999999 9999999988 888888666778766
Q ss_pred E
Q 025844 136 V 136 (247)
Q Consensus 136 v 136 (247)
+
T Consensus 183 ~ 183 (200)
T PRK13540 183 T 183 (200)
T ss_pred E
Confidence 6
No 102
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.91 E-value=1.7e-23 Score=175.83 Aligned_cols=129 Identities=19% Similarity=0.194 Sum_probs=100.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC-----------CCCCCC-------CcccChhhhHh------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENFDY-------PVAMDIRELIS------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~-----------~~~~~y-------~~~~~v~e~i~------ 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++. ...+.| .+..++++++.
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~ 104 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK 104 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc
Confidence 468999999999999999999999999999999987632 112333 23457776653
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
+.++++.+++.+..... ...++.|++ +.||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 105 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~lS~G~~qr~~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~ 179 (206)
T TIGR03608 105 KLSKKEKREKKKEALEKVGLNLKLKQK--IYELSGGEQQRVALARAILK--DPPLILADEPTGSLDPKNRDEVL-DLLLE 179 (206)
T ss_pred CCCHHHHHHHHHHHHHHcCchhhhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcCCCCHHHHHHHH-HHHHH
Confidence 45678888886543333 235666543 899999999 999999999999 9999999998 88888
Q ss_pred HHhCCCeEEEE
Q 025844 126 LKSRNFNVCAV 136 (247)
Q Consensus 126 l~~~~~~ii~v 136 (247)
+.+.+.+++++
T Consensus 180 ~~~~~~tii~~ 190 (206)
T TIGR03608 180 LNDEGKTIIIV 190 (206)
T ss_pred HHhcCCEEEEE
Confidence 87667777666
No 103
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.91 E-value=3.1e-23 Score=178.67 Aligned_cols=140 Identities=17% Similarity=0.203 Sum_probs=104.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-------CcccChhhhHh---------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~--------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~ 108 (242)
T TIGR03411 29 ELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSV 108 (242)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhccccc
Confidence 4689999999999999999999999999999999976431 12333 23456666542
Q ss_pred ---------------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844 59 ---------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (247)
Q Consensus 59 ---------------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (247)
+.++++.+++.+..... ...+++|. ++.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~Ge~qrv~laral~~--~p~~lllDEPt~~LD~~~~~~l~- 183 (242)
T TIGR03411 109 FASLFFRLSAEEKDRIEEVLETIGLADEADRL--AGLLSHGQKQWLEIGMLLMQ--DPKLLLLDEPVAGMTDEETEKTA- 183 (242)
T ss_pred ccccccccHHHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEecCCccCCCHHHHHHHH-
Confidence 35567778887543332 24566654 3899999999 999999999999 9999999998
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++++++ +.+++++ +|...+...+++
T Consensus 184 ~~l~~~~~-~~tii~~----sH~~~~~~~~~d 210 (242)
T TIGR03411 184 ELLKSLAG-KHSVVVV----EHDMEFVRSIAD 210 (242)
T ss_pred HHHHHHhc-CCEEEEE----ECCHHHHHHhCC
Confidence 88888865 6677655 466555555555
No 104
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.90 E-value=9.6e-24 Score=178.69 Aligned_cols=141 Identities=19% Similarity=0.269 Sum_probs=104.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----CCCCC-------CcccChhhhHh------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----~~~~y-------~~~~~v~e~i~------------ 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++.+++.
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~ 104 (213)
T TIGR01277 25 EIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAE 104 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccCCccHH
Confidence 4689999999999999999999999999999999976421 12222 23456666653
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-C
Q 025844 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N 130 (247)
Q Consensus 59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~ 130 (247)
++++++.+++.+..... ...++.|+ +++||++++. +|+++|+||||+ ||+.++..+. ++++++.++ +
T Consensus 105 ~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~~~~ 179 (213)
T TIGR01277 105 QQEKVVDAAQQVGIADYLDRL--PEQLSGGQRQRVALARCLVR--PNPILLLDEPFSALDPLLREEML-ALVKQLCSERQ 179 (213)
T ss_pred HHHHHHHHHHHcCcHHHhhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhcC
Confidence 34577888886543222 23466554 3899999999 999999999999 9999999998 888888654 7
Q ss_pred CeEEEEEecccccccchhHHhh
Q 025844 131 FNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s 152 (247)
.+++++ +|...+...+++
T Consensus 180 ~tii~v----sh~~~~~~~~~d 197 (213)
T TIGR01277 180 RTLLMV----THHLSDARAIAS 197 (213)
T ss_pred CEEEEE----eCCHHHHHhhcC
Confidence 787666 355444444444
No 105
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.9e-23 Score=183.74 Aligned_cols=141 Identities=14% Similarity=0.191 Sum_probs=107.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC---------CCCCCC-Cc-------ccChhhhHh-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------AENFDY-PV-------AMDIRELIS------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~---------~~~~~y-~~-------~~~v~e~i~------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+.. ...++| ++ ..++.+++.
T Consensus 29 e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~ 108 (275)
T PRK13639 29 EMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLG 108 (275)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcC
Confidence 378999999999999999999999999999999997652 112333 11 236666653
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (247)
Q Consensus 59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (247)
+.++++.+++.+..... ...+++|++ +.||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 109 ~~~~~~~~~~~~~l~~~~L~~~~~~~--~~~LS~Gq~qrv~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~l~~l 183 (275)
T PRK13639 109 LSKEEVEKRVKEALKAVGMEGFENKP--PHHLSGGQKKRVAIAGILAM--KPEIIVLDEPTSGLDPMGASQIM-KLLYDL 183 (275)
T ss_pred CCHHHHHHHHHHHHHHCCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHH
Confidence 45678888887654433 245666643 899999999 999999999999 9999999999 888888
Q ss_pred HhCCCeEEEEEecccccccchhHHhh
Q 025844 127 KSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+++|.+++++ +|...+...+++
T Consensus 184 ~~~~~til~v----tH~~~~~~~~~d 205 (275)
T PRK13639 184 NKEGITIIIS----THDVDLVPVYAD 205 (275)
T ss_pred HHCCCEEEEE----ecCHHHHHHhCC
Confidence 7668888666 466555555555
No 106
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.90 E-value=4e-23 Score=188.96 Aligned_cols=146 Identities=18% Similarity=0.205 Sum_probs=111.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEecc----CCCC-----------CCCCC-------CcccChhhhHh--
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL----DPAA-----------ENFDY-------PVAMDIRELIS-- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~----d~~~-----------~~~~y-------~~~~~v~e~i~-- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|+++|. ++.. ..++| .+..|+++++.
T Consensus 51 ei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~ 130 (382)
T TIGR03415 51 EICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFG 130 (382)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHH
Confidence 368999999999999999999999999999999985 3210 12333 44568888764
Q ss_pred --------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 025844 59 --------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (247)
Q Consensus 59 --------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (247)
+.++++.+||.+..... ...+++|++ +.||++++. +|+++|+|||++ ||+.++..+. +
T Consensus 131 ~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~--~~~LSgGq~QRV~LARALa~--~P~ILLlDEPts~LD~~~r~~l~-~ 205 (382)
T TIGR03415 131 LEMQGMPEAERRKRVDEQLELVGLAQWADKK--PGELSGGMQQRVGLARAFAM--DADILLMDEPFSALDPLIRTQLQ-D 205 (382)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHH-H
Confidence 45678889997654443 245666654 899999999 999999999999 9999999998 8
Q ss_pred HHHHHHhC-CCeEEEEEecccccccchhHHhhhhHHH
Q 025844 122 FVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMAS 157 (247)
Q Consensus 122 ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s~~l~~ 157 (247)
.+.+++++ +.+++++ +|.+.+...+++.++..
T Consensus 206 ~L~~l~~~~~~TII~i----THdl~e~~~l~DrI~vl 238 (382)
T TIGR03415 206 ELLELQAKLNKTIIFV----SHDLDEALKIGNRIAIM 238 (382)
T ss_pred HHHHHHHhcCCEEEEE----eCCHHHHHHhCCEEEEE
Confidence 88888654 7888766 46666666666644333
No 107
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.90 E-value=9.7e-24 Score=182.86 Aligned_cols=141 Identities=15% Similarity=0.166 Sum_probs=104.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC--CCCCCCCcccChhhhHh------------HHHHHHHcCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDYPVAMDIRELIS------------LEDVMEELGL 68 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~--~~~~~y~~~~~v~e~i~------------~~~~l~~~~L 68 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|..++ .+........++++++. ..++++.+++
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l 105 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQI 105 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCC
Confidence 478999999999999999999999999999999875332 12222233457777663 3557778888
Q ss_pred CCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEEEecccccc
Q 025844 69 GPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFI 144 (247)
Q Consensus 69 ~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~ 144 (247)
....... ...+++|+ +++||++++. +|+++|+||||+ ||+.++..+. ++++++.+ .+.+++++ +|.+
T Consensus 106 ~~~~~~~--~~~LSgGe~qrv~iaraL~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tiiiv----sHd~ 176 (246)
T cd03237 106 EQILDRE--VPELSGGELQRVAIAACLSK--DADIYLLDEPSAYLDVEQRLMAS-KVIRRFAENNEKTAFVV----EHDI 176 (246)
T ss_pred HHHhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEE----eCCH
Confidence 6433222 34566654 3899999999 999999999999 9999999988 88888865 47787666 3555
Q ss_pred cchhHHhh
Q 025844 145 TDVTKFIS 152 (247)
Q Consensus 145 ~d~~~~~s 152 (247)
.....+++
T Consensus 177 ~~~~~~~d 184 (246)
T cd03237 177 IMIDYLAD 184 (246)
T ss_pred HHHHHhCC
Confidence 54455544
No 108
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.90 E-value=2.5e-23 Score=177.99 Aligned_cols=141 Identities=16% Similarity=0.192 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-------CcccChhhhHh---------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~--------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| ++..++.+++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 106 (230)
T TIGR03410 27 EVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRR 106 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcc
Confidence 4789999999999999999999999999999999865421 12333 23457777664
Q ss_pred ----HHHHHHHcC-CCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-
Q 025844 59 ----LEDVMEELG-LGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR- 129 (247)
Q Consensus 59 ----~~~~l~~~~-L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~- 129 (247)
.+++++.++ ++...... ...+++|++ +.||++++. +|+++|+||||+ ||+.++..+. +++++++++
T Consensus 107 ~~~~~~~~l~~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~~ 181 (230)
T TIGR03410 107 SRKIPDEIYELFPVLKEMLGRR--GGDLSGGQQQQLAIARALVT--RPKLLLLDEPTEGIQPSIIKDIG-RVIRRLRAEG 181 (230)
T ss_pred hHHHHHHHHHHHHhHHHHhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHH-HHHHHHHHcC
Confidence 234555554 33222111 234666543 899999999 999999999999 9999999998 888888764
Q ss_pred CCeEEEEEecccccccchhHHhh
Q 025844 130 NFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 130 ~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+.+++++ +|.......+++
T Consensus 182 ~~tii~~----sH~~~~~~~~~d 200 (230)
T TIGR03410 182 GMAILLV----EQYLDFARELAD 200 (230)
T ss_pred CcEEEEE----eCCHHHHHHhCC
Confidence 7787666 355554444444
No 109
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.6e-24 Score=188.68 Aligned_cols=141 Identities=14% Similarity=0.119 Sum_probs=104.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---------CCCCC-Cc-------ccChhhhHh-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-PV-------AMDIRELIS------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---------~~~~y-~~-------~~~v~e~i~------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++.+++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~ 107 (271)
T PRK13638 28 PVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLG 107 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHcC
Confidence 3689999999999999999999999999999999976521 12333 21 123444432
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (247)
Q Consensus 59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (247)
++++++.+++.+..... ...+++|++ +.||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 108 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrl~laraL~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~ 182 (271)
T PRK13638 108 VPEAEITRRVDEALTLVDAQHFRHQP--IQCLSHGQKKRVAIAGALVL--QARYLLLDEPTAGLDPAGRTQMI-AIIRRI 182 (271)
T ss_pred CCHHHHHHHHHHHHHHcCCHhHhcCC--chhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHH
Confidence 34577788886543322 245666654 899999999 999999999999 9999999998 888888
Q ss_pred HhCCCeEEEEEecccccccchhHHhh
Q 025844 127 KSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+++|.+++++ +|...+...+++
T Consensus 183 ~~~g~tii~v----tH~~~~~~~~~d 204 (271)
T PRK13638 183 VAQGNHVIIS----SHDIDLIYEISD 204 (271)
T ss_pred HHCCCEEEEE----eCCHHHHHHhCC
Confidence 7667787665 355554445554
No 110
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.9e-23 Score=179.56 Aligned_cols=141 Identities=16% Similarity=0.180 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-------CcccChhhhHh---------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~--------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++.+++.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 111 (237)
T PRK11614 32 EIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERD 111 (237)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhccChh
Confidence 4789999999999999999999999999999999976421 12333 22356776653
Q ss_pred -----HHHHHHHc-CCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 025844 59 -----LEDVMEEL-GLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (247)
Q Consensus 59 -----~~~~l~~~-~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (247)
++++++.+ ++.+.... ....+++|++ ++||++++. +|+++|+||||+ ||+.++..+. +++++++++
T Consensus 112 ~~~~~~~~~l~~~~~l~~~~~~--~~~~LS~G~~qrl~la~al~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~ 186 (237)
T PRK11614 112 QFQERIKWVYELFPRLHERRIQ--RAGTMSGGEQQMLAIGRALMS--QPRLLLLDEPSLGLAPIIIQQIF-DTIEQLREQ 186 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC--chhhCCHHHHHHHHHHHHHHh--CCCEEEEcCccccCCHHHHHHHH-HHHHHHHHC
Confidence 23344445 34322111 1345666543 899999999 999999999999 9999999988 888888766
Q ss_pred CCeEEEEEecccccccchhHHhh
Q 025844 130 NFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 130 ~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
|.+++++ +|...+...+++
T Consensus 187 ~~tiii~----sH~~~~~~~~~d 205 (237)
T PRK11614 187 GMTIFLV----EQNANQALKLAD 205 (237)
T ss_pred CCEEEEE----eCcHHHHHhhCC
Confidence 8887665 455555555555
No 111
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.90 E-value=1.2e-23 Score=192.84 Aligned_cols=145 Identities=13% Similarity=0.191 Sum_probs=120.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---------------CCCCCCcccChhhhHh---------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS--------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---------------~~~~y~~~~~v~e~i~--------- 58 (247)
-+.+++|.||||||||+++|+|+++|++|+|+++|..... |++...+.+|+.||+-
T Consensus 31 eIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~ 110 (501)
T COG3845 31 EIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGG 110 (501)
T ss_pred cEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCcccccc
Confidence 4789999999999999999999999999999999975421 6677778889999874
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (247)
Q Consensus 59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (247)
++++++++||.-+......--....++++.|.++|.. +|++|||||||+ |-|.....++ .+++.++
T Consensus 111 ~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr--~a~iLILDEPTaVLTP~E~~~lf-~~l~~l~ 187 (501)
T COG3845 111 LIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYR--GARLLILDEPTAVLTPQEADELF-EILRRLA 187 (501)
T ss_pred ccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHH
Confidence 7889999999765444432112334566999999999 999999999999 9999999999 9999999
Q ss_pred hCCCeEEEEEecccccccchhHHhhhh
Q 025844 128 SRNFNVCAVYLLDSQFITDVTKFISGC 154 (247)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~d~~~~~s~~ 154 (247)
++|++|+++ +|.+.+...+++++
T Consensus 188 ~~G~tIi~I----THKL~Ev~~iaDrv 210 (501)
T COG3845 188 AEGKTIIFI----THKLKEVMAIADRV 210 (501)
T ss_pred HCCCEEEEE----eccHHHHHHhhCee
Confidence 999999877 47777777776643
No 112
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.3e-23 Score=183.51 Aligned_cols=141 Identities=15% Similarity=0.158 Sum_probs=104.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------CCCCC-Cc-------ccChhhhHh-----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV-------AMDIRELIS----- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------~~~~y-~~-------~~~v~e~i~----- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| ++ ..++++++.
T Consensus 34 e~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~ 113 (280)
T PRK13649 34 SYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQN 113 (280)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHH
Confidence 3789999999999999999999999999999999865421 12333 11 236666653
Q ss_pred -----------HHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 025844 59 -----------LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (247)
Q Consensus 59 -----------~~~~l~~~~L~~-~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (247)
++++++.+++.+ ..... ...+++|++ +.||++++. +|+++|+||||+ ||+.++..+. +++
T Consensus 114 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l 188 (280)
T PRK13649 114 FGVSQEEAEALAREKLALVGISESLFEKN--PFELSGGQMRRVAIAGILAM--EPKILVLDEPTAGLDPKGRKELM-TLF 188 (280)
T ss_pred cCCCHHHHHHHHHHHHHHcCCChhhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHH
Confidence 345667788863 22222 235666644 899999999 999999999999 9999999988 888
Q ss_pred HHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 124 DHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 124 ~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+++++.+.+++++ +|...+...+++
T Consensus 189 ~~~~~~~~tiiiv----sH~~~~~~~~~d 213 (280)
T PRK13649 189 KKLHQSGMTIVLV----THLMDDVANYAD 213 (280)
T ss_pred HHHHHCCCEEEEE----eccHHHHHHhCC
Confidence 8887667787666 355555555555
No 113
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=8.4e-24 Score=182.27 Aligned_cols=141 Identities=19% Similarity=0.235 Sum_probs=105.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC-------------CCCCCC-------CcccChhhhHh----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------------AENFDY-------PVAMDIRELIS---- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~-------------~~~~~y-------~~~~~v~e~i~---- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++. ...+.| .+..++.+++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~ 108 (242)
T PRK11124 29 ETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPC 108 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHH
Confidence 468999999999999999999999999999999997641 112333 22357776653
Q ss_pred -------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 025844 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (247)
Q Consensus 59 -------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (247)
+.++++.+|+.+..... ...+++|++ ++||++++. +|+++|+||||+ ||+.++..+. ++
T Consensus 109 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llilDEPt~~LD~~~~~~l~-~~ 183 (242)
T PRK11124 109 RVLGLSKDQALARAEKLLERLRLKPYADRF--PLHLSGGQQQRVAIARALMM--EPQVLLFDEPTAALDPEITAQIV-SI 183 (242)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCcCCHHHHHHHH-HH
Confidence 35567788886543332 235666543 899999999 999999999999 9999999988 88
Q ss_pred HHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++++++.+++++ +|...+...+++
T Consensus 184 l~~~~~~~~tii~~----sh~~~~~~~~~d 209 (242)
T PRK11124 184 IRELAETGITQVIV----THEVEVARKTAS 209 (242)
T ss_pred HHHHHHcCCEEEEE----eCCHHHHHHhcC
Confidence 88887667787655 355544444444
No 114
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=1e-24 Score=179.84 Aligned_cols=142 Identities=16% Similarity=0.259 Sum_probs=114.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-Cc------ccChhhhHh---------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELIS--------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-~~------~~~v~e~i~--------- 58 (247)
-+++++|||||||||.+.++.|+.+|++|+|++++.|+.. -.++| +| .+||+||+.
T Consensus 31 EiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d 110 (243)
T COG1137 31 EIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKD 110 (243)
T ss_pred cEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcc
Confidence 4799999999999999999999999999999999998743 34556 33 567888874
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (247)
Q Consensus 59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (247)
+++.++++++.+...... ..+++|- ++.|||+|+. +|++++||||++ +||.+..++. ++++.|
T Consensus 111 ~~~~~~~~~l~~LL~ef~i~hlr~~~a--~sLSGGERRR~EIARaLa~--~P~fiLLDEPFAGVDPiaV~dIq-~iI~~L 185 (243)
T COG1137 111 LKKAERKEELDALLEEFHITHLRDSKA--YSLSGGERRRVEIARALAA--NPKFILLDEPFAGVDPIAVIDIQ-RIIKHL 185 (243)
T ss_pred hhHHHHHHHHHHHHHHhchHHHhcCcc--cccccchHHHHHHHHHHhc--CCCEEEecCCccCCCchhHHHHH-HHHHHH
Confidence 457888898887654442 2455554 3999999999 999999999999 9999999987 999999
Q ss_pred HhCCCeEEEEEecccccccchhHHhhh
Q 025844 127 KSRNFNVCAVYLLDSQFITDVTKFISG 153 (247)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~s~ 153 (247)
+..|..|+ +..|...+--..|++
T Consensus 186 ~~rgiGvL----ITDHNVREtL~i~dR 208 (243)
T COG1137 186 KDRGIGVL----ITDHNVRETLDICDR 208 (243)
T ss_pred HhCCceEE----EccccHHHHHhhhhe
Confidence 98898884 445777666666653
No 115
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.90 E-value=2.1e-23 Score=187.66 Aligned_cols=138 Identities=14% Similarity=0.141 Sum_probs=106.0
Q ss_pred EEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----CCCCC-------CcccChhhhHh----------------
Q 025844 7 VIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS---------------- 58 (247)
Q Consensus 7 iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----~~~~y-------~~~~~v~e~i~---------------- 58 (247)
|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++.+++++++.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 589999999999999999999999999999976421 22332 34567877764
Q ss_pred HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCeEE
Q 025844 59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVC 134 (247)
Q Consensus 59 ~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii 134 (247)
++++++.+++.+..... ...+++|++ ++||++++. +|+++|||||++ ||+.++..+. ++++++.++ |.+++
T Consensus 81 ~~~~l~~~~l~~~~~~~--~~~LSgGq~qRvalaraL~~--~p~lllLDEP~s~LD~~~~~~l~-~~l~~l~~~~g~tii 155 (325)
T TIGR01187 81 VLEALRLVQLEEFADRK--PHQLSGGQQQRVALARALVF--KPKILLLDEPLSALDKKLRDQMQ-LELKTIQEQLGITFV 155 (325)
T ss_pred HHHHHHHcCCcchhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHhcCCEEE
Confidence 35678888887654443 345666654 999999999 999999999999 9999999988 888887654 78886
Q ss_pred EEEecccccccchhHHhhh
Q 025844 135 AVYLLDSQFITDVTKFISG 153 (247)
Q Consensus 135 ~v~l~d~~~~~d~~~~~s~ 153 (247)
++ +|...+...+++.
T Consensus 156 iv----THd~~e~~~~~d~ 170 (325)
T TIGR01187 156 FV----THDQEEAMTMSDR 170 (325)
T ss_pred EE----eCCHHHHHHhCCE
Confidence 66 4666555555553
No 116
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=3.2e-24 Score=189.62 Aligned_cols=141 Identities=16% Similarity=0.210 Sum_probs=106.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------CCCCC-Cc-------ccChhhhHh-----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV-------AMDIRELIS----- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------~~~~y-~~-------~~~v~e~i~----- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++.+++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~ 113 (286)
T PRK13646 34 KYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKN 113 (286)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHHHHhhHHH
Confidence 3689999999999999999999999999999999976521 12344 22 126666653
Q ss_pred -----------HHHHHHHcCCC-CCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 025844 59 -----------LEDVMEELGLG-PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (247)
Q Consensus 59 -----------~~~~l~~~~L~-~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (247)
+.++++.+|+. +..... ...+++|++ ++||++++. +|+++|+||||+ ||+.++..+. +++
T Consensus 114 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--~~~LSgGq~qrv~laraL~~--~p~illlDEPt~~LD~~~~~~l~-~~l 188 (286)
T PRK13646 114 FKMNLDEVKNYAHRLLMDLGFSRDVMSQS--PFQMSGGQMRKIAIVSILAM--NPDIIVLDEPTAGLDPQSKRQVM-RLL 188 (286)
T ss_pred cCCCHHHHHHHHHHHHHHcCCChhhhhCC--cccCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHH
Confidence 45678888886 322222 234666543 999999999 999999999999 9999999998 999
Q ss_pred HHHHh-CCCeEEEEEecccccccchhHHhh
Q 025844 124 DHLKS-RNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 124 ~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+++++ .|.+++++ +|.+.+...+++
T Consensus 189 ~~l~~~~g~tvl~v----tH~~~~~~~~~d 214 (286)
T PRK13646 189 KSLQTDENKTIILV----SHDMNEVARYAD 214 (286)
T ss_pred HHHHHhCCCEEEEE----ecCHHHHHHhCC
Confidence 99865 48888766 466555555555
No 117
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.90 E-value=2.7e-23 Score=187.25 Aligned_cols=142 Identities=18% Similarity=0.262 Sum_probs=107.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCC---------CcccChhhhHh-----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY---------PVAMDIRELIS----- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y---------~~~~~v~e~i~----- 58 (247)
-+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+.+++.+++.
T Consensus 48 e~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~ 127 (331)
T PRK15079 48 ETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRT 127 (331)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHH
Confidence 3689999999999999999999999999999999977531 12322 33456666642
Q ss_pred -------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 025844 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (247)
Q Consensus 59 -------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (247)
+.++++.+++.+.....+ ...+++|++ ++||++++. +|++||+||||+ ||+.++..++ ++
T Consensus 128 ~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~-p~~LSgG~~QRv~iArAL~~--~P~llilDEPts~LD~~~~~~i~-~l 203 (331)
T PRK15079 128 YHPKLSRQEVKDRVKAMMLKVGLLPNLINRY-PHEFSGGQCQRIGIARALIL--EPKLIICDEPVSALDVSIQAQVV-NL 203 (331)
T ss_pred hccCCCHHHHHHHHHHHHHHcCCChHHhcCC-cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HH
Confidence 456788888854221222 245666654 899999999 999999999999 9999999999 89
Q ss_pred HHHHHhC-CCeEEEEEecccccccchhHHhh
Q 025844 123 VDHLKSR-NFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 123 l~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+++++++ |.++++| +|.+.....+++
T Consensus 204 L~~l~~~~~~til~i----THdl~~~~~~~d 230 (331)
T PRK15079 204 LQQLQREMGLSLIFI----AHDLAVVKHISD 230 (331)
T ss_pred HHHHHHHcCCEEEEE----eCCHHHHHHhCC
Confidence 9998764 8888766 466665555555
No 118
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.9e-23 Score=184.40 Aligned_cols=141 Identities=13% Similarity=0.155 Sum_probs=108.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---------CCCCC-C-------cccChhhhHh-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-P-------VAMDIRELIS------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---------~~~~y-~-------~~~~v~e~i~------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| + ...++++++.
T Consensus 33 e~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~ 112 (283)
T PRK13636 33 EVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLK 112 (283)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcC
Confidence 3789999999999999999999999999999999976521 12333 1 1246666653
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (247)
Q Consensus 59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (247)
++++++.+++....... ...+++|++ +.||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 113 ~~~~~~~~~~~~~l~~~gL~~~~~~~--~~~LS~G~~qrl~laraL~~--~p~lLilDEPt~gLD~~~~~~l~-~~l~~l 187 (283)
T PRK13636 113 LPEDEVRKRVDNALKRTGIEHLKDKP--THCLSFGQKKRVAIAGVLVM--EPKVLVLDEPTAGLDPMGVSEIM-KLLVEM 187 (283)
T ss_pred CCHHHHHHHHHHHHHHCCChhhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHH
Confidence 45677888887644333 345666654 899999999 999999999999 9999999998 888888
Q ss_pred HhC-CCeEEEEEecccccccchhHHhh
Q 025844 127 KSR-NFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 127 ~~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+++ |.+++++ +|.+.+...+++
T Consensus 188 ~~~~g~tillv----sH~~~~~~~~~d 210 (283)
T PRK13636 188 QKELGLTIIIA----THDIDIVPLYCD 210 (283)
T ss_pred HHhCCCEEEEE----ecCHHHHHHhCC
Confidence 764 7888666 466666556665
No 119
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.90 E-value=3.7e-23 Score=180.22 Aligned_cols=141 Identities=18% Similarity=0.266 Sum_probs=104.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-------CcccChhhhHh----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS---------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-------~~~~~v~e~i~---------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| .+..++++++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 108 (258)
T PRK13548 29 EVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSR 108 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCc
Confidence 4789999999999999999999999999999999875421 12222 23456776653
Q ss_pred ------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhh------cCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 025844 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELD------NYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (247)
Q Consensus 59 ------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~------~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (247)
+.++++.+++....... ...+++|+ +++||++++ . +|+++|+||||+ ||+.++..+. +++
T Consensus 109 ~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGe~qrv~la~al~~~~~~~~--~p~lllLDEPt~~LD~~~~~~l~-~~l 183 (258)
T PRK13548 109 AEDDALVAAALAQVDLAHLAGRD--YPQLSGGEQQRVQLARVLAQLWEPDG--PPRWLLLDEPTSALDLAHQHHVL-RLA 183 (258)
T ss_pred HHHHHHHHHHHHHcCCHhHhcCC--cccCCHHHHHHHHHHHHHhcccccCC--CCCEEEEeCCcccCCHHHHHHHH-HHH
Confidence 34577778886533222 23566654 389999999 5 899999999999 9999999998 888
Q ss_pred HHHH-hCCCeEEEEEecccccccchhHHhh
Q 025844 124 DHLK-SRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 124 ~~l~-~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+++. +.+.+++++ +|...+...+++
T Consensus 184 ~~~~~~~~~tiii~----sH~~~~~~~~~d 209 (258)
T PRK13548 184 RQLAHERGLAVIVV----LHDLNLAARYAD 209 (258)
T ss_pred HHHHHhcCCEEEEE----ECCHHHHHHhcC
Confidence 8886 567777666 465555555555
No 120
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.90 E-value=3.4e-23 Score=176.88 Aligned_cols=129 Identities=20% Similarity=0.230 Sum_probs=99.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhHh------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------~~~~y-------~~~~~v~e~i~------ 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++.+++.
T Consensus 37 e~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~ 116 (228)
T PRK10584 37 ETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR 116 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc
Confidence 4789999999999999999999999999999999865421 12333 23356666653
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
+.++++.+++....... ...+++|+ ++.||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 117 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~Ge~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~ 191 (228)
T PRK10584 117 GESSRQSRNGAKALLEQLGLGKRLDHL--PAQLSGGEQQRVALARAFNG--RPDVLFADEPTGNLDRQTGDKIA-DLLFS 191 (228)
T ss_pred CCCHHHHHHHHHHHHHHcCCHhHhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHH
Confidence 45677888886533222 23466654 3899999999 999999999999 9999999988 88888
Q ss_pred HHhC-CCeEEEE
Q 025844 126 LKSR-NFNVCAV 136 (247)
Q Consensus 126 l~~~-~~~ii~v 136 (247)
++++ |.+++++
T Consensus 192 ~~~~~~~tii~~ 203 (228)
T PRK10584 192 LNREHGTTLILV 203 (228)
T ss_pred HHHhcCCEEEEE
Confidence 8654 7777666
No 121
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.3e-23 Score=184.52 Aligned_cols=143 Identities=18% Similarity=0.167 Sum_probs=107.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------CCCCC-Cc-------ccChhhhHh-----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV-------AMDIRELIS----- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------~~~~y-~~-------~~~v~e~i~----- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~ 113 (290)
T PRK13634 34 SYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMN 113 (290)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHH
Confidence 3789999999999999999999999999999999976521 12333 11 236666653
Q ss_pred -----------HHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 025844 59 -----------LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (247)
Q Consensus 59 -----------~~~~l~~~~L~~-~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (247)
++++++.++|.+ ..... ...+++|++ ++||++++. +|+++|+||||+ ||+.++..+. +++
T Consensus 114 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--~~~LSgGq~qrv~lAraL~~--~P~llllDEPt~~LD~~~~~~l~-~~L 188 (290)
T PRK13634 114 FGVSEEDAKQKAREMIELVGLPEELLARS--PFELSGGQMRRVAIAGVLAM--EPEVLVLDEPTAGLDPKGRKEMM-EMF 188 (290)
T ss_pred cCCCHHHHHHHHHHHHHHCCCChhhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHH
Confidence 456788889863 22222 234666543 899999999 999999999999 9999999998 889
Q ss_pred HHHHhC-CCeEEEEEecccccccchhHHhhhh
Q 025844 124 DHLKSR-NFNVCAVYLLDSQFITDVTKFISGC 154 (247)
Q Consensus 124 ~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s~~ 154 (247)
++++++ |.+|+++ +|.+.+...+++.+
T Consensus 189 ~~l~~~~g~tviii----tHd~~~~~~~~drv 216 (290)
T PRK13634 189 YKLHKEKGLTTVLV----THSMEDAARYADQI 216 (290)
T ss_pred HHHHHhcCCEEEEE----eCCHHHHHHhCCEE
Confidence 888654 8888666 46666566666633
No 122
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.90 E-value=4.4e-23 Score=172.42 Aligned_cols=129 Identities=13% Similarity=0.058 Sum_probs=98.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCCCcccChhhhHh-----------HHH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPVAMDIRELIS-----------LED 61 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y~~~~~v~e~i~-----------~~~ 61 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+.+..++++++. +.+
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~ 106 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYA 106 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhcccHHHHHH
Confidence 4789999999999999999999999999999999976421 1122234567887764 355
Q ss_pred HHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 62 VMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 62 ~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
+++.+++.+..... ...+++|++ +.+|++++. +|+++|+|||++ +|+.++..+. ++++...+.+.+++++
T Consensus 107 ~l~~~~l~~~~~~~--~~~LS~G~~~rl~la~al~~--~p~~lllDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~ 179 (195)
T PRK13541 107 AIHYFKLHDLLDEK--CYSLSSGMQKIVAIARLIAC--QSDLWLLDEVETNLSKENRDLLN-NLIVMKANSGGIVLLS 179 (195)
T ss_pred HHHHcCCHhhhccC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 66777886533322 234666543 899999999 999999999999 9999998888 7777665567777666
No 123
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.9e-23 Score=177.92 Aligned_cols=141 Identities=17% Similarity=0.245 Sum_probs=104.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----CCCCC-------CcccChhhhHh------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----~~~~y-------~~~~~v~e~i~------------ 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++.+++.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 105 (232)
T PRK10771 26 ERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAA 105 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccccCCCHH
Confidence 4789999999999999999999999999999999876421 12223 22346666553
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 025844 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (247)
Q Consensus 59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (247)
+.++++.+++.+..... ...+++|++ +.||++++. +|+++|+|||++ ||+.++..+. ++++++.+ .|
T Consensus 106 ~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~lllLDEP~~gLD~~~~~~~~-~~l~~~~~~~~ 180 (232)
T PRK10771 106 QREKLHAIARQMGIEDLLARL--PGQLSGGQRQRVALARCLVR--EQPILLLDEPFSALDPALRQEML-TLVSQVCQERQ 180 (232)
T ss_pred HHHHHHHHHHHcCcHHHHhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 45567778886543222 234666543 899999999 999999999999 9999999998 88888765 47
Q ss_pred CeEEEEEecccccccchhHHhh
Q 025844 131 FNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s 152 (247)
.+++++ +|...+...+++
T Consensus 181 ~tiii~----sH~~~~~~~~~d 198 (232)
T PRK10771 181 LTLLMV----SHSLEDAARIAP 198 (232)
T ss_pred CEEEEE----ECCHHHHHHhCC
Confidence 787666 355554444444
No 124
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=3.6e-23 Score=182.11 Aligned_cols=141 Identities=18% Similarity=0.213 Sum_probs=107.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-C-------cccChhhhHh---------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-------VAMDIRELIS--------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~-------~~~~v~e~i~--------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| + ...++.+++.
T Consensus 31 e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~ 110 (277)
T PRK13652 31 SRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLD 110 (277)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcCCC
Confidence 4789999999999999999999999999999999976532 12222 1 1346666663
Q ss_pred -------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (247)
Q Consensus 59 -------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (247)
+.++++.+++.+..... ...+++|++ +.||++++. +|+++|+||||+ ||+.++..+. ++++++++
T Consensus 111 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~Gq~qrl~laraL~~--~p~llilDEPt~gLD~~~~~~l~-~~l~~l~~ 185 (277)
T PRK13652 111 EETVAHRVSSALHMLGLEELRDRV--PHHLSGGEKKRVAIAGVIAM--EPQVLVLDEPTAGLDPQGVKELI-DFLNDLPE 185 (277)
T ss_pred HHHHHHHHHHHHHHCCChhHhcCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence 45678888887644333 235666654 899999999 999999999999 9999999998 88988876
Q ss_pred C-CCeEEEEEecccccccchhHHhh
Q 025844 129 R-NFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 129 ~-~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+ |.+++++ +|...+...+++
T Consensus 186 ~~g~tvli~----tH~~~~~~~~~d 206 (277)
T PRK13652 186 TYGMTVIFS----THQLDLVPEMAD 206 (277)
T ss_pred hcCCEEEEE----ecCHHHHHHhCC
Confidence 4 7787655 466665555655
No 125
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.90 E-value=4.9e-23 Score=176.38 Aligned_cols=141 Identities=14% Similarity=0.182 Sum_probs=102.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC----CCceEEEeccCCCC-----CCCCC---------CcccChhhhHh------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET----VRRTMHIVNLDPAA-----ENFDY---------PVAMDIRELIS------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~----~~G~v~i~g~d~~~-----~~~~y---------~~~~~v~e~i~------ 58 (247)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..+.| .+.+++.+++.
T Consensus 13 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~ 92 (230)
T TIGR02770 13 EVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSL 92 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHHHc
Confidence 47899999999999999999999999 89999999976421 12222 22345444321
Q ss_pred ----------HHHHHHHcCCCC---CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 025844 59 ----------LEDVMEELGLGP---NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (247)
Q Consensus 59 ----------~~~~l~~~~L~~---~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (247)
+.++++.+++.. ..... ...+++|++ ++||++++. +|+++||||||+ ||+.++..+. ++
T Consensus 93 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--~~~LS~G~~qrv~laral~~--~p~vllLDEPt~~LD~~~~~~l~-~~ 167 (230)
T TIGR02770 93 GKLSKQARALILEALEAVGLPDPEEVLKKY--PFQLSGGMLQRVMIALALLL--EPPFLIADEPTTDLDVVNQARVL-KL 167 (230)
T ss_pred CccHHHHHHHHHHHHHHcCCCchHHHHhCC--hhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHHH-HH
Confidence 456778888862 11111 234666543 899999999 999999999999 9999999988 88
Q ss_pred HHHHHhC-CCeEEEEEecccccccchhHHhh
Q 025844 123 VDHLKSR-NFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 123 l~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+++++++ +.+++++ +|...+...+++
T Consensus 168 l~~~~~~~~~tiii~----sH~~~~~~~~~d 194 (230)
T TIGR02770 168 LRELRQLFGTGILLI----THDLGVVARIAD 194 (230)
T ss_pred HHHHHHhcCCEEEEE----eCCHHHHHHhCC
Confidence 8888654 7777665 466555555544
No 126
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.90 E-value=2.3e-23 Score=179.18 Aligned_cols=141 Identities=18% Similarity=0.228 Sum_probs=103.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC--------CcccChhhhHh----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY--------PVAMDIRELIS---------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y--------~~~~~v~e~i~---------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 48 e~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~ 127 (236)
T cd03267 48 EIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPP 127 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCH
Confidence 4789999999999999999999999999999998865311 12222 23456666653
Q ss_pred ------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 025844 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (247)
Q Consensus 59 ------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (247)
+.++++.+++.+..... ...+++|++ +.||++++. +|+++|+||||+ ||+.++..+. +++++++++
T Consensus 128 ~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~ 202 (236)
T cd03267 128 ARFKKRLDELSELLDLEELLDTP--VRQLSLGQRMRAEIAAALLH--EPEILFLDEPTIGLDVVAQENIR-NFLKEYNRE 202 (236)
T ss_pred HHHHHHHHHHHHHcCChhHhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHHHhc
Confidence 34567777876533222 245666644 899999999 999999999999 9999999998 888888654
Q ss_pred -CCeEEEEEecccccccchhHHhh
Q 025844 130 -NFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 130 -~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+.+++++ +|.......+++
T Consensus 203 ~~~tiiiv----sH~~~~~~~~~d 222 (236)
T cd03267 203 RGTTVLLT----SHYMKDIEALAR 222 (236)
T ss_pred CCCEEEEE----ecCHHHHHHhCC
Confidence 6777666 355544444444
No 127
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=5.2e-24 Score=187.66 Aligned_cols=129 Identities=13% Similarity=0.138 Sum_probs=101.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC--------CcccChhhhHh---------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY--------PVAMDIRELIS--------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y--------~~~~~v~e~i~--------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|+++|.+... ..++| .+..++++++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~ 113 (279)
T PRK13650 34 EWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIP 113 (279)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCC
Confidence 3689999999999999999999999999999999976532 12333 12346777663
Q ss_pred -------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (247)
Q Consensus 59 -------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (247)
+.++++.+|+.+...... ..+++|+ +++||++++. +|+++|+||||+ ||+.+++.++ ++++++++
T Consensus 114 ~~~~~~~~~~~l~~~gL~~~~~~~~--~~LSgGq~qrv~lAral~~--~p~lLlLDEPt~~LD~~~~~~l~-~~l~~l~~ 188 (279)
T PRK13650 114 HEEMKERVNEALELVGMQDFKEREP--ARLSGGQKQRVAIAGAVAM--RPKIIILDEATSMLDPEGRLELI-KTIKGIRD 188 (279)
T ss_pred HHHHHHHHHHHHHHCCCHhHhhCCc--ccCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHHH
Confidence 466788889875433332 3466554 4899999999 999999999999 9999999998 88998876
Q ss_pred C-CCeEEEE
Q 025844 129 R-NFNVCAV 136 (247)
Q Consensus 129 ~-~~~ii~v 136 (247)
+ |.+++++
T Consensus 189 ~~g~tiliv 197 (279)
T PRK13650 189 DYQMTVISI 197 (279)
T ss_pred hcCCEEEEE
Confidence 4 8888766
No 128
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.90 E-value=4.3e-23 Score=195.91 Aligned_cols=143 Identities=15% Similarity=0.154 Sum_probs=110.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-------CcccChhhhHh---------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~--------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+.+++.+++.
T Consensus 38 e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 117 (510)
T PRK15439 38 EVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQAS 117 (510)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccchHH
Confidence 4689999999999999999999999999999999876421 12333 23467777653
Q ss_pred ---HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCe
Q 025844 59 ---LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN 132 (247)
Q Consensus 59 ---~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ 132 (247)
+.++++.+++....... ...+++|++ ++||++++. +|++||+||||+ ||+.++..+. +++++++++|.+
T Consensus 118 ~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~aL~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~g~t 192 (510)
T PRK15439 118 MQKMKQLLAALGCQLDLDSS--AGSLEVADRQIVEILRGLMR--DSRILILDEPTASLTPAETERLF-SRIRELLAQGVG 192 (510)
T ss_pred HHHHHHHHHHcCCCccccCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHHCCCE
Confidence 45688899997654333 345776654 999999999 999999999999 9999999998 889888777888
Q ss_pred EEEEEecccccccchhHHhhhh
Q 025844 133 VCAVYLLDSQFITDVTKFISGC 154 (247)
Q Consensus 133 ii~v~l~d~~~~~d~~~~~s~~ 154 (247)
++++ +|.......+++.+
T Consensus 193 iiiv----tHd~~~~~~~~d~i 210 (510)
T PRK15439 193 IVFI----SHKLPEIRQLADRI 210 (510)
T ss_pred EEEE----eCCHHHHHHhCCEE
Confidence 8666 46655555555533
No 129
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.90 E-value=5.3e-23 Score=180.10 Aligned_cols=142 Identities=18% Similarity=0.205 Sum_probs=102.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-C--------cccChhhhHh--------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P--------VAMDIRELIS-------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~--------~~~~v~e~i~-------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| + +..++.+++.
T Consensus 40 e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~ 119 (267)
T PRK15112 40 QTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTD 119 (267)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccC
Confidence 4789999999999999999999999999999999876431 12333 1 1223333321
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (247)
Q Consensus 59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (247)
+.++++.+++.+...... ...++.|++ ++||++++. +|+++|||||++ ||+.++..+. ++++++
T Consensus 120 ~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~ 195 (267)
T PRK15112 120 LEPEQREKQIIETLRQVGLLPDHASYY-PHMLAPGQKQRLGLARALIL--RPKVIIADEALASLDMSMRSQLI-NLMLEL 195 (267)
T ss_pred CCHHHHHHHHHHHHHHcCCChHHHhcC-chhcCHHHHHHHHHHHHHHh--CCCEEEEcCCcccCCHHHHHHHH-HHHHHH
Confidence 456788888853221111 245666554 899999999 999999999999 9999999888 888888
Q ss_pred HhC-CCeEEEEEecccccccchhHHhh
Q 025844 127 KSR-NFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 127 ~~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+++ |.+++++ +|...+...+++
T Consensus 196 ~~~~g~tviiv----sH~~~~~~~~~d 218 (267)
T PRK15112 196 QEKQGISYIYV----TQHLGMMKHISD 218 (267)
T ss_pred HHHcCcEEEEE----eCCHHHHHHhcC
Confidence 654 7777665 466555555555
No 130
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.90 E-value=5.5e-23 Score=173.47 Aligned_cols=129 Identities=21% Similarity=0.232 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----CCCCC-------CcccChhhhHh------------H
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS------------L 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----~~~~y-------~~~~~v~e~i~------------~ 59 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++.+++. +
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~ 108 (207)
T PRK13539 29 EALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDI 108 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHH
Confidence 4689999999999999999999999999999999876321 11222 23457777653 5
Q ss_pred HHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 60 EDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 60 ~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
.++++.+|+.+..... ...++.|+ ++.||++++. +|+++|+||||+ ||+.++..+. +++++++++|.+++++
T Consensus 109 ~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~ 183 (207)
T PRK13539 109 AAALEAVGLAPLAHLP--FGYLSAGQKRRVALARLLVS--NRPIWILDEPTAALDAAAVALFA-ELIRAHLAQGGIVIAA 183 (207)
T ss_pred HHHHHHcCCHHHHcCC--hhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEE
Confidence 6688888886532222 24566654 3899999999 999999999999 9999999998 8888876668887666
No 131
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=3.5e-23 Score=181.98 Aligned_cols=129 Identities=19% Similarity=0.229 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC--------CcccChhhhHh--------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY--------PVAMDIRELIS-------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y--------~~~~~v~e~i~-------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|+++|.++.. ..++| ....++.+++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~ 108 (274)
T PRK13644 29 EYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCL 108 (274)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHcCC
Confidence 3789999999999999999999999999999999976531 12333 11246666553
Q ss_pred --------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (247)
Q Consensus 59 --------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (247)
+.++++.+++....... ...+++|++ +.||++++. +|+++|+||||+ ||+.++..+. +++++++
T Consensus 109 ~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~laral~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~l~ 183 (274)
T PRK13644 109 PPIEIRKRVDRALAEIGLEKYRHRS--PKTLSGGQGQCVALAGILTM--EPECLIFDEVTSMLDPDSGIAVL-ERIKKLH 183 (274)
T ss_pred CHHHHHHHHHHHHHHCCCHHHhcCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHH
Confidence 45667788886543332 245666543 899999999 999999999999 9999999998 8898887
Q ss_pred hCCCeEEEE
Q 025844 128 SRNFNVCAV 136 (247)
Q Consensus 128 ~~~~~ii~v 136 (247)
+.|.+++++
T Consensus 184 ~~g~til~~ 192 (274)
T PRK13644 184 EKGKTIVYI 192 (274)
T ss_pred hCCCEEEEE
Confidence 668888666
No 132
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=4.8e-24 Score=191.34 Aligned_cols=141 Identities=17% Similarity=0.170 Sum_probs=105.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------------------CCCCC-Cc-------cc
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------------------ENFDY-PV-------AM 51 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------------------~~~~y-~~-------~~ 51 (247)
-+++|+||||||||||+++|+|+++|++|+|+++|.+... +.++| ++ ..
T Consensus 53 e~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~ 132 (320)
T PRK13631 53 KIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD 132 (320)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhccccc
Confidence 4789999999999999999999999999999999865421 11233 11 12
Q ss_pred ChhhhHh----------------HHHHHHHcCCC-CCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-cc
Q 025844 52 DIRELIS----------------LEDVMEELGLG-PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IE 111 (247)
Q Consensus 52 ~v~e~i~----------------~~~~l~~~~L~-~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD 111 (247)
++++++. +.++++.+++. ...... ...+++|+ +++||++++. +|+++|+||||+ ||
T Consensus 133 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--~~~LSgGqkqRvaiAraL~~--~p~iLLLDEPtsgLD 208 (320)
T PRK13631 133 TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERS--PFGLSGGQKRRVAIAGILAI--QPEILIFDEPTAGLD 208 (320)
T ss_pred hHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECCccCCC
Confidence 6666552 45678888886 222222 23466654 4999999999 999999999999 99
Q ss_pred HHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 112 LFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 112 ~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+.+++.++ +++++++++|.+++++ +|.+.....+++
T Consensus 209 ~~~~~~l~-~~L~~l~~~g~Tiiiv----tHd~~~~~~~ad 244 (320)
T PRK13631 209 PKGEHEMM-QLILDAKANNKTVFVI----THTMEHVLEVAD 244 (320)
T ss_pred HHHHHHHH-HHHHHHHHCCCEEEEE----ecCHHHHHHhCC
Confidence 99999999 8888887668888666 466555555555
No 133
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.90 E-value=2.7e-23 Score=177.13 Aligned_cols=141 Identities=17% Similarity=0.215 Sum_probs=102.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCC---------CcccChhhhHh-----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY---------PVAMDIRELIS----- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y---------~~~~~v~e~i~----- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~ 111 (228)
T cd03257 32 ETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRI 111 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHh
Confidence 3789999999999999999999999999999999876421 12332 22356666653
Q ss_pred -------------HHHHHHHcCCC-CCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 025844 59 -------------LEDVMEELGLG-PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (247)
Q Consensus 59 -------------~~~~l~~~~L~-~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (247)
+.++++.+++. +..... ...+++|+ ++.||++++. +|+++||||||+ ||+.++..+. +
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~ 186 (228)
T cd03257 112 HGKLSKKEARKEAVLLLLVGVGLPEEVLNRY--PHELSGGQRQRVAIARALAL--NPKLLIADEPTSALDVSVQAQIL-D 186 (228)
T ss_pred ccCCcHHHHHHHHHHHHHHHCCCChhHhhCC--chhcCHHHHHHHHHHHHHhc--CCCEEEecCCCCCCCHHHHHHHH-H
Confidence 12456677774 222222 23466654 3899999999 999999999999 9999999988 8
Q ss_pred HHHHHHhC-CCeEEEEEecccccccchhHHhh
Q 025844 122 FVDHLKSR-NFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 122 ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++++++ |.+++++ +|.......+++
T Consensus 187 ~l~~~~~~~~~tii~~----sH~~~~~~~~~d 214 (228)
T cd03257 187 LLKKLQEELGLTLLFI----THDLGVVAKIAD 214 (228)
T ss_pred HHHHHHHHcCCEEEEE----eCCHHHHHHhcC
Confidence 88888764 7787666 355544444444
No 134
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.90 E-value=7e-23 Score=179.08 Aligned_cols=141 Identities=16% Similarity=0.247 Sum_probs=104.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCC---------CcccChhhhHh-----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY---------PVAMDIRELIS----- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y---------~~~~~v~e~i~----- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... +.++| .+..++++++.
T Consensus 38 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~ 117 (265)
T TIGR02769 38 ETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRH 117 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHH
Confidence 3789999999999999999999999999999999865421 12332 23346666541
Q ss_pred ------------HHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 025844 59 ------------LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (247)
Q Consensus 59 ------------~~~~l~~~~L~~-~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (247)
+.++++.+++.. ..... ...+++|++ +.||++++. +|+++|+||||+ ||+.++..+. ++
T Consensus 118 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--~~~LSgGe~qrv~laral~~--~p~illLDEPt~~LD~~~~~~l~-~~ 192 (265)
T TIGR02769 118 LTSLDESEQKARIAELLDMVGLRSEDADKL--PRQLSGGQLQRINIARALAV--KPKLIVLDEAVSNLDMVLQAVIL-EL 192 (265)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCChhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HH
Confidence 456788888853 22222 235666543 899999999 999999999999 9999999988 88
Q ss_pred HHHHHhC-CCeEEEEEecccccccchhHHhh
Q 025844 123 VDHLKSR-NFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 123 l~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++.++ |.+++++ +|.......+++
T Consensus 193 l~~~~~~~g~tiiiv----sH~~~~~~~~~d 219 (265)
T TIGR02769 193 LRKLQQAFGTAYLFI----THDLRLVQSFCQ 219 (265)
T ss_pred HHHHHHhcCcEEEEE----eCCHHHHHHHhc
Confidence 8888654 7787666 355554445544
No 135
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.90 E-value=4.2e-23 Score=179.57 Aligned_cols=141 Identities=18% Similarity=0.202 Sum_probs=106.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC--------------------CCCCCC-------CcccChhh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------------------AENFDY-------PVAMDIRE 55 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~--------------------~~~~~y-------~~~~~v~e 55 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+.. .+.+.| .+..++++
T Consensus 32 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~e 111 (257)
T PRK10619 32 DVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLE 111 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHH
Confidence 478999999999999999999999999999999986542 122333 22357777
Q ss_pred hHh-----------------HHHHHHHcCCCCCC-chhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHh
Q 025844 56 LIS-----------------LEDVMEELGLGPNG-GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFT 114 (247)
Q Consensus 56 ~i~-----------------~~~~l~~~~L~~~~-~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~ 114 (247)
++. +.++++.+|+.... ... ...+++|++ +.||++++. +|+++|+||||+ ||+.+
T Consensus 112 nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~ 187 (257)
T PRK10619 112 NVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKY--PVHLSGGQQQRVSIARALAM--EPEVLLFDEPTSALDPEL 187 (257)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHH
Confidence 753 35678888886532 222 245666643 899999999 999999999999 99999
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 115 HVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 115 ~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+..+. ++++++++.|.+++++ +|...+...+++
T Consensus 188 ~~~l~-~~l~~l~~~g~tiiiv----sH~~~~~~~~~d 220 (257)
T PRK10619 188 VGEVL-RIMQQLAEEGKTMVVV----THEMGFARHVSS 220 (257)
T ss_pred HHHHH-HHHHHHHhcCCEEEEE----eCCHHHHHHhcC
Confidence 99998 8889987668888766 355544444444
No 136
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.90 E-value=3e-23 Score=177.10 Aligned_cols=141 Identities=15% Similarity=0.264 Sum_probs=104.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--CCCCC-C--------cccChhhhH--------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDY-P--------VAMDIRELI-------------- 57 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--~~~~y-~--------~~~~v~e~i-------------- 57 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| + ...++.+++
T Consensus 7 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~ 86 (223)
T TIGR03771 7 ELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRRP 86 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccccccCC
Confidence 4689999999999999999999999999999999976521 12222 1 123454442
Q ss_pred ------hHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844 58 ------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (247)
Q Consensus 58 ------~~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (247)
.+.++++.+++.+..... ...++.|++ +.||++++. +|+++|+|||++ ||+.++..+. ++++++++
T Consensus 87 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llilDEP~~~LD~~~~~~l~-~~l~~~~~ 161 (223)
T TIGR03771 87 CVADFAAVRDALRRVGLTELADRP--VGELSGGQRQRVLVARALAT--RPSVLLLDEPFTGLDMPTQELLT-ELFIELAG 161 (223)
T ss_pred cHHHHHHHHHHHHHhCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence 145677888887644333 234666543 899999999 999999999999 9999999998 88888876
Q ss_pred CCCeEEEEEecccccccchhHHhh
Q 025844 129 RNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 129 ~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++.+++++ +|...+...+++
T Consensus 162 ~~~tvii~----sH~~~~~~~~~d 181 (223)
T TIGR03771 162 AGTAILMT----THDLAQAMATCD 181 (223)
T ss_pred cCCEEEEE----eCCHHHHHHhCC
Confidence 68888666 355554455544
No 137
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.90 E-value=8.4e-24 Score=180.53 Aligned_cols=142 Identities=18% Similarity=0.225 Sum_probs=103.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC-----cCCCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHh----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC-----ETVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l-----~~~~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~---- 58 (247)
-+++|+||||||||||+++|+|++ +|++|+|.++|.++.. +.++| ++ ..++++++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~ 106 (227)
T cd03260 27 EITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLR 106 (227)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhccccHHHHHHhHHH
Confidence 468999999999999999999999 9999999999976421 12333 11 346766653
Q ss_pred -------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 025844 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (247)
Q Consensus 59 -------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (247)
+.++++.+++.+..........+++|++ ++||++++. +|+++|+||||+ ||+.++..+. ++
T Consensus 107 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~ 183 (227)
T cd03260 107 LHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALAN--EPEVLLLDEPTSALDPISTAKIE-EL 183 (227)
T ss_pred hcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HH
Confidence 3456777888653222210134666543 899999999 999999999999 9999999998 88
Q ss_pred HHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+++++++ .+++++ +|.......+++
T Consensus 184 l~~~~~~-~tii~~----sH~~~~~~~~~d 208 (227)
T cd03260 184 IAELKKE-YTIVIV----THNMQQAARVAD 208 (227)
T ss_pred HHHHhhC-cEEEEE----eccHHHHHHhCC
Confidence 8888665 666555 455554445544
No 138
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=4.6e-23 Score=181.68 Aligned_cols=129 Identities=17% Similarity=0.189 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC--------CcccChhhhHh---------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY--------PVAMDIRELIS--------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y--------~~~~~v~e~i~--------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ....++.+++.
T Consensus 34 e~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~ 113 (279)
T PRK13635 34 EWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVP 113 (279)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCC
Confidence 3689999999999999999999999999999999976532 12333 12346777663
Q ss_pred -------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (247)
Q Consensus 59 -------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (247)
+.++++.+||.+..... ...+++|++ +.||++++. +|+++|+||||+ ||+.++..++ ++++++++
T Consensus 114 ~~~~~~~~~~~l~~~gL~~~~~~~--~~~LS~G~~qrv~laral~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~l~~ 188 (279)
T PRK13635 114 REEMVERVDQALRQVGMEDFLNRE--PHRLSGGQKQRVAIAGVLAL--QPDIIILDEATSMLDPRGRREVL-ETVRQLKE 188 (279)
T ss_pred HHHHHHHHHHHHHHcCChhhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence 46677888887654333 245666654 899999999 999999999999 9999999998 98999876
Q ss_pred C-CCeEEEE
Q 025844 129 R-NFNVCAV 136 (247)
Q Consensus 129 ~-~~~ii~v 136 (247)
+ |.+++++
T Consensus 189 ~~~~tiliv 197 (279)
T PRK13635 189 QKGITVLSI 197 (279)
T ss_pred cCCCEEEEE
Confidence 5 7888666
No 139
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=1e-23 Score=171.59 Aligned_cols=129 Identities=19% Similarity=0.258 Sum_probs=104.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---------------------------CCCCCCcccChhhh
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------------------ENFDYPVAMDIREL 56 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---------------------------~~~~y~~~~~v~e~ 56 (247)
++.|||.+|||||||+|+|.=+.+|+.|.|.++|..+.. +++.....+|+.++
T Consensus 34 VisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeN 113 (256)
T COG4598 34 VISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLEN 113 (256)
T ss_pred EEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHH
Confidence 688999999999999999999999999999999854311 33333445666666
Q ss_pred Hh-----------------HHHHHHHcCCCCCCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHH
Q 025844 57 IS-----------------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHV 116 (247)
Q Consensus 57 i~-----------------~~~~l~~~~L~~~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~ 116 (247)
+- ++.++.++|+........+ .++++ ++++|||||+. +|++++|||||+ |||...-
T Consensus 114 ViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~--~LSGGQQQR~aIARaLam--eP~vmLFDEPTSALDPElVg 189 (256)
T COG4598 114 VIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPA--HLSGGQQQRVAIARALAM--EPEVMLFDEPTSALDPELVG 189 (256)
T ss_pred HHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCcc--ccCchHHHHHHHHHHHhc--CCceEeecCCcccCCHHHHH
Confidence 53 5778889999876653333 35554 35999999999 999999999999 9999999
Q ss_pred HHHHHHHHHHHhCCCeEEEEE
Q 025844 117 PVLRNFVDHLKSRNFNVCAVY 137 (247)
Q Consensus 117 ~~~~~ll~~l~~~~~~ii~v~ 137 (247)
+++ +.++.|+++|.|.++|.
T Consensus 190 EVL-kv~~~LAeEgrTMv~VT 209 (256)
T COG4598 190 EVL-KVMQDLAEEGRTMVVVT 209 (256)
T ss_pred HHH-HHHHHHHHhCCeEEEEe
Confidence 999 99999999999987773
No 140
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=4.8e-23 Score=180.13 Aligned_cols=141 Identities=26% Similarity=0.400 Sum_probs=103.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-------CcccChhhhHh----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS---------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-------~~~~~v~e~i~---------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++.+++.
T Consensus 38 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 117 (265)
T PRK10575 38 KVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGAL 117 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccc
Confidence 4789999999999999999999999999999999865421 12222 22345555442
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
+.++++.+++.+..... ...+++|+ ++.||++++. +|+++|+||||+ ||+.+++.+. +++++
T Consensus 118 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~~~-~~l~~ 192 (265)
T PRK10575 118 GRFGAADREKVEEAISLVGLKPLAHRL--VDSLSGGERQRAWIAMLVAQ--DSRCLLLDEPTSALDIAHQVDVL-ALVHR 192 (265)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHH
Confidence 34567777875432222 23466654 3899999999 999999999999 9999999998 88888
Q ss_pred HHhC-CCeEEEEEecccccccchhHHhh
Q 025844 126 LKSR-NFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 126 l~~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+++. |.+++++ +|.......+++
T Consensus 193 l~~~~~~tiii~----sH~~~~i~~~~d 216 (265)
T PRK10575 193 LSQERGLTVIAV----LHDINMAARYCD 216 (265)
T ss_pred HHHhcCCEEEEE----eCCHHHHHHhCC
Confidence 8654 7787665 466555555555
No 141
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.90 E-value=3.3e-23 Score=196.23 Aligned_cols=143 Identities=15% Similarity=0.186 Sum_probs=107.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-------CcccChhhhHh---------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~--------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.++| .+.+++++++.
T Consensus 31 e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 110 (501)
T PRK10762 31 RVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRF 110 (501)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhcccccccc
Confidence 4789999999999999999999999999999999866421 22333 23456665432
Q ss_pred -----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 025844 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (247)
Q Consensus 59 -----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~ 124 (247)
+.++++.+++....... ...+++|++ ++||++++. +|++|||||||+ ||+.++..+. ++++
T Consensus 111 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~ 185 (501)
T PRK10762 111 GRIDWKKMYAEADKLLARLNLRFSSDKL--VGELSIGEQQMVEIAKVLSF--ESKVIIMDEPTDALTDTETESLF-RVIR 185 (501)
T ss_pred CccCHHHHHHHHHHHHHHcCCCCCccCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcCCCCHHHHHHHH-HHHH
Confidence 45678888987654333 346777654 899999999 999999999999 9999999998 8999
Q ss_pred HHHhCCCeEEEEEecccccccchhHHhhhh
Q 025844 125 HLKSRNFNVCAVYLLDSQFITDVTKFISGC 154 (247)
Q Consensus 125 ~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~ 154 (247)
++++.|.+++++ +|...+...+++.+
T Consensus 186 ~l~~~~~tvii~----sHd~~~~~~~~d~i 211 (501)
T PRK10762 186 ELKSQGRGIVYI----SHRLKEIFEICDDV 211 (501)
T ss_pred HHHHCCCEEEEE----eCCHHHHHHhCCEE
Confidence 987667787666 34444444444433
No 142
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.90 E-value=8.4e-23 Score=177.14 Aligned_cols=141 Identities=17% Similarity=0.195 Sum_probs=103.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC--------------------CCCCCC-------CcccChhh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------------------AENFDY-------PVAMDIRE 55 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~--------------------~~~~~y-------~~~~~v~e 55 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+.. .+.+.| .+..++.+
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 106 (252)
T TIGR03005 27 EKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLD 106 (252)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHH
Confidence 468999999999999999999999999999999986542 112222 23456666
Q ss_pred hHh-----------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhH
Q 025844 56 LIS-----------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTH 115 (247)
Q Consensus 56 ~i~-----------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~ 115 (247)
++. +.++++.+++.+..... ...++.|++ ++||++++. +|+++|+|||++ ||+.++
T Consensus 107 nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~ 182 (252)
T TIGR03005 107 NVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHM--PAQLSGGQQQRVAIARALAM--RPKVMLFDEVTSALDPELV 182 (252)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcC--hhhcCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHH
Confidence 553 35677788886532222 245666543 899999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHhC-CCeEEEEEecccccccchhHHhh
Q 025844 116 VPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 116 ~~~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
..+. ++++++.++ |.+++++ +|...+...+++
T Consensus 183 ~~l~-~~l~~~~~~~~~tiiiv----sH~~~~~~~~~d 215 (252)
T TIGR03005 183 GEVL-NVIRRLASEHDLTMLLV----THEMGFAREFAD 215 (252)
T ss_pred HHHH-HHHHHHHHhcCcEEEEE----eCCHHHHHHhcC
Confidence 9998 888888654 7787666 355544444444
No 143
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=6.5e-23 Score=184.54 Aligned_cols=142 Identities=19% Similarity=0.207 Sum_probs=107.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCC---------CcccChhhhHh-----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY---------PVAMDIRELIS----- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y---------~~~~~v~e~i~----- 58 (247)
-+++|+|+||||||||+++|+|+++|++|+|.++|.+... ..+.| .+.+++.+++.
T Consensus 42 e~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~ 121 (327)
T PRK11308 42 KTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLI 121 (327)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHH
Confidence 4789999999999999999999999999999999976521 12333 22345554431
Q ss_pred ------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 025844 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (247)
Q Consensus 59 ------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (247)
+.++++.+|+.+.....+ ...+++|++ ++||++++. +|++||+||||+ ||..++..++ +++
T Consensus 122 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-p~~LSgGq~QRv~iArAL~~--~P~lLilDEPts~LD~~~~~~i~-~lL 197 (327)
T PRK11308 122 NTSLSAAERREKALAMMAKVGLRPEHYDRY-PHMFSGGQRQRIAIARALML--DPDVVVADEPVSALDVSVQAQVL-NLM 197 (327)
T ss_pred ccCCCHHHHHHHHHHHHHHCCCChHHhcCC-CccCCHHHHHHHHHHHHHHc--CCCEEEEECCCccCCHHHHHHHH-HHH
Confidence 577888999964221222 245666654 899999999 999999999999 9999999999 888
Q ss_pred HHHHh-CCCeEEEEEecccccccchhHHhh
Q 025844 124 DHLKS-RNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 124 ~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+++++ .|.++++| +|.+.....+++
T Consensus 198 ~~l~~~~g~til~i----THdl~~~~~~ad 223 (327)
T PRK11308 198 MDLQQELGLSYVFI----SHDLSVVEHIAD 223 (327)
T ss_pred HHHHHHcCCEEEEE----eCCHHHHHHhCC
Confidence 88876 48888766 466555555555
No 144
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.90 E-value=2.3e-23 Score=179.29 Aligned_cols=130 Identities=15% Similarity=0.151 Sum_probs=95.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC--cCCCceEEEeccCCCC--------CCCCC-------CcccChhhhHh-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l--~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~------- 58 (247)
-+++|+||||||||||+++|+|++ +|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~ 106 (243)
T TIGR01978 27 EIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARR 106 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhh
Confidence 378999999999999999999995 7999999999975421 11333 12334544331
Q ss_pred ----------------HHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 025844 59 ----------------LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (247)
Q Consensus 59 ----------------~~~~l~~~~L~~-~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (247)
+.++++.+++.+ ....... ..+++|++ ++||++++. +|+++|+||||+ ||+.++..+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l 183 (243)
T TIGR01978 107 SARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN-EGFSGGEKKRNEILQMALL--EPKLAILDEIDSGLDIDALKIV 183 (243)
T ss_pred cccccccccHHHHHHHHHHHHHHcCCchhhcccccc-cCcCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHH
Confidence 345666778863 2222211 12565543 899999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 025844 119 LRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v 136 (247)
. +++++++++|.+++++
T Consensus 184 ~-~~l~~~~~~~~tvi~v 200 (243)
T TIGR01978 184 A-EGINRLREPDRSFLII 200 (243)
T ss_pred H-HHHHHHHHCCcEEEEE
Confidence 8 8899887667787666
No 145
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=1e-23 Score=177.41 Aligned_cols=132 Identities=15% Similarity=0.140 Sum_probs=97.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-------CcccChhhhHhHH-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELISLE------- 60 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~~~------- 60 (247)
-+++++||||+|||||+|+|+|+.++.+|+|.+.|.|+.. ..++| ++.+||+||+.+-
T Consensus 30 eiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~ 109 (237)
T COG0410 30 EIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDK 109 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhccccc
Confidence 4799999999999999999999999999999999998753 22333 5678888887511
Q ss_pred ----H-HHHHcCCCCCCchhh--hHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-
Q 025844 61 ----D-VMEELGLGPNGGLIY--CMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR- 129 (247)
Q Consensus 61 ----~-~l~~~~L~~~~~~~~--~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~- 129 (247)
. .=+.+.+-|....+. ....+++|.+ ++|||||+. +|++|+||||+. |-|.-..+++ +.+++++++
T Consensus 110 ~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~--~PklLLLDEPs~GLaP~iv~~I~-~~i~~l~~~~ 186 (237)
T COG0410 110 EAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMS--RPKLLLLDEPSEGLAPKIVEEIF-EAIKELRKEG 186 (237)
T ss_pred ccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhc--CCCEEEecCCccCcCHHHHHHHH-HHHHHHHHcC
Confidence 0 111223333211110 0123444433 899999999 999999999999 9999999999 999999865
Q ss_pred CCeEEEEE
Q 025844 130 NFNVCAVY 137 (247)
Q Consensus 130 ~~~ii~v~ 137 (247)
|.+|+.|.
T Consensus 187 g~tIlLVE 194 (237)
T COG0410 187 GMTILLVE 194 (237)
T ss_pred CcEEEEEe
Confidence 77887773
No 146
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.89 E-value=4.2e-23 Score=170.84 Aligned_cols=125 Identities=15% Similarity=0.241 Sum_probs=93.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC----------CcccChhhhHhHHHHHH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY----------PVAMDIRELISLEDVME 64 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y----------~~~~~v~e~i~~~~~l~ 64 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..+++|++.....
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~-- 104 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL-- 104 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh--
Confidence 3689999999999999999999999999999999976531 12333 222455555432110
Q ss_pred HcCCCCCCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEeccc
Q 025844 65 ELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS 141 (247)
Q Consensus 65 ~~~L~~~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~ 141 (247)
++.+ +++.||++++. +|+++|+|||++ ||+.++..+. ++++++++++.+++++ +
T Consensus 105 ----------------LS~G~~qrl~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~----s 161 (182)
T cd03215 105 ----------------LSGGNQQKVVLARWLAR--DPRVLILDEPTRGVDVGAKAEIY-RLIRELADAGKAVLLI----S 161 (182)
T ss_pred ----------------cCHHHHHHHHHHHHHcc--CCCEEEECCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEE----e
Confidence 3333 34899999999 999999999999 9999999998 8888886667777665 4
Q ss_pred ccccchhHHhh
Q 025844 142 QFITDVTKFIS 152 (247)
Q Consensus 142 ~~~~d~~~~~s 152 (247)
|...+...+++
T Consensus 162 h~~~~~~~~~d 172 (182)
T cd03215 162 SELDELLGLCD 172 (182)
T ss_pred CCHHHHHHhCC
Confidence 55555555554
No 147
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.89 E-value=1.1e-22 Score=176.97 Aligned_cols=141 Identities=18% Similarity=0.281 Sum_probs=103.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-------CcccChhhhHh----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS---------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-------~~~~~v~e~i~---------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| ....++.+++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 107 (256)
T TIGR03873 28 SLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLW 107 (256)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhc
Confidence 4789999999999999999999999999999999865421 12333 12345666542
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
+.++++.+++....... ...+++|++ +.||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 108 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~ 182 (256)
T TIGR03873 108 AGDSPHDAAVVDRALARTELSHLADRD--MSTLSGGERQRVHVARALAQ--EPKLLLLDEPTNHLDVRAQLETL-ALVRE 182 (256)
T ss_pred cCCCHHHHHHHHHHHHHcCcHhhhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHH-HHHHH
Confidence 34466677775432222 234555543 899999999 999999999999 9999999998 88988
Q ss_pred HHhCCCeEEEEEecccccccchhHHhh
Q 025844 126 LKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 126 l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+++++.+++++ +|...+...+++
T Consensus 183 ~~~~~~tiii~----sH~~~~~~~~~d 205 (256)
T TIGR03873 183 LAATGVTVVAA----LHDLNLAASYCD 205 (256)
T ss_pred HHhcCCEEEEE----eCCHHHHHHhCC
Confidence 87667777665 466555555555
No 148
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=8.3e-23 Score=176.20 Aligned_cols=141 Identities=18% Similarity=0.255 Sum_probs=103.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh-----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~ 109 (241)
T PRK14250 30 AIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNV 109 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHhcchhhcCcHHH
Confidence 3689999999999999999999999999999999876421 12333 11 135666553
Q ss_pred -HHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCe
Q 025844 59 -LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFN 132 (247)
Q Consensus 59 -~~~~l~~~~L~~-~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ 132 (247)
+.++++.+++.+ ..... ...+++|++ +.||++++. +|+++|+|||++ ||+.++..+. ++++++++ .|.+
T Consensus 110 ~~~~~l~~~~l~~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~g~t 184 (241)
T PRK14250 110 DVEYYLSIVGLNKEYATRD--VKNLSGGEAQRVSIARTLAN--NPEVLLLDEPTSALDPTSTEIIE-ELIVKLKNKMNLT 184 (241)
T ss_pred HHHHHHHHcCCCHHHhhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhCCCE
Confidence 456788888852 22222 234666543 899999999 999999999999 9999999888 88888865 4788
Q ss_pred EEEEEecccccccchhHHhh
Q 025844 133 VCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 133 ii~v~l~d~~~~~d~~~~~s 152 (247)
++++ +|...+...+++
T Consensus 185 ii~~----sH~~~~~~~~~d 200 (241)
T PRK14250 185 VIWI----THNMEQAKRIGD 200 (241)
T ss_pred EEEE----eccHHHHHHhCC
Confidence 7666 355554445444
No 149
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.89 E-value=2.7e-22 Score=175.57 Aligned_cols=141 Identities=17% Similarity=0.074 Sum_probs=103.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC-CCCCCCCCcccChhhhHh----------------HHHHHHH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-AAENFDYPVAMDIRELIS----------------LEDVMEE 65 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~-~~~~~~y~~~~~v~e~i~----------------~~~~l~~ 65 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|... ..+...+.+..++.+++. +.++++.
T Consensus 51 e~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~ 130 (264)
T PRK13546 51 DVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEF 130 (264)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999988521 112223334456666653 2345666
Q ss_pred cCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccc
Q 025844 66 LGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ 142 (247)
Q Consensus 66 ~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~ 142 (247)
+++++..... ...+++|++ ++||++++. +|+++|+|||++ ||+.++..+. +++..+++.|.+++++ +|
T Consensus 131 ~~l~~~~~~~--~~~LS~Gq~qrv~Laral~~--~p~iLlLDEPt~gLD~~~~~~l~-~~L~~~~~~g~tiIii----sH 201 (264)
T PRK13546 131 SELGEFIYQP--VKKYSSGMRAKLGFSINITV--NPDILVIDEALSVGDQTFAQKCL-DKIYEFKEQNKTIFFV----SH 201 (264)
T ss_pred cCCchhhcCC--cccCCHHHHHHHHHHHHHhh--CCCEEEEeCccccCCHHHHHHHH-HHHHHHHHCCCEEEEE----cC
Confidence 7776543222 245666654 899999999 999999999999 9999999988 8888887678888666 35
Q ss_pred cccchhHHhh
Q 025844 143 FITDVTKFIS 152 (247)
Q Consensus 143 ~~~d~~~~~s 152 (247)
.......+++
T Consensus 202 ~~~~i~~~~d 211 (264)
T PRK13546 202 NLGQVRQFCT 211 (264)
T ss_pred CHHHHHHHcC
Confidence 5554445444
No 150
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=7e-23 Score=181.26 Aligned_cols=142 Identities=17% Similarity=0.135 Sum_probs=103.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC------------CCCCCC-Cc-------ccChhhhHh----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA------------AENFDY-PV-------AMDIRELIS---- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~------------~~~~~y-~~-------~~~v~e~i~---- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+.. ...++| ++ ..++++++.
T Consensus 38 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~ 117 (289)
T PRK13645 38 KVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPV 117 (289)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHH
Confidence 378999999999999999999999999999999986532 112333 11 225666553
Q ss_pred ------------HHHHHHHcCCC-CCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 025844 59 ------------LEDVMEELGLG-PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (247)
Q Consensus 59 ------------~~~~l~~~~L~-~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (247)
+.++++.+++. ...... ...+++|++ ++||++++. +|+++||||||+ ||+.++..+. ++
T Consensus 118 ~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~--~~~LS~Gq~qrv~laral~~--~p~lLlLDEPt~~LD~~~~~~l~-~~ 192 (289)
T PRK13645 118 NLGENKQEAYKKVPELLKLVQLPEDYVKRS--PFELSGGQKRRVALAGIIAM--DGNTLVLDEPTGGLDPKGEEDFI-NL 192 (289)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCChhHhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-HH
Confidence 34567777873 222222 245666654 899999999 999999999999 9999999988 88
Q ss_pred HHHHHh-CCCeEEEEEecccccccchhHHhhh
Q 025844 123 VDHLKS-RNFNVCAVYLLDSQFITDVTKFISG 153 (247)
Q Consensus 123 l~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s~ 153 (247)
++++.+ .+.+++++ +|...+...+++.
T Consensus 193 l~~~~~~~~~tiiii----sH~~~~~~~~~d~ 220 (289)
T PRK13645 193 FERLNKEYKKRIIMV----THNMDQVLRIADE 220 (289)
T ss_pred HHHHHHhcCCEEEEE----ecCHHHHHHhCCE
Confidence 888865 47787666 4555555555553
No 151
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=7e-23 Score=168.19 Aligned_cols=109 Identities=19% Similarity=0.296 Sum_probs=85.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC-Cc------ccChhhhHhHHHHHHHcCCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-PV------AMDIRELISLEDVMEELGLG 69 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y-~~------~~~v~e~i~~~~~l~~~~L~ 69 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| ++ ..++.+++.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~----------- 95 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK----------- 95 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh-----------
Confidence 3689999999999999999999999999999999875431 12333 22 234444432
Q ss_pred CCCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 70 PNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 70 ~~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
+++| +++.||++++. +|+++|+|||++ ||+.++..+. ++++++.++|.+++++
T Consensus 96 -----------LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~g~tiii~ 151 (173)
T cd03230 96 -----------LSGGMKQRLALAQALLH--DPELLILDEPTSGLDPESRREFW-ELLRELKKEGKTILLS 151 (173)
T ss_pred -----------cCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHCCCEEEEE
Confidence 3333 34899999999 999999999999 9999999998 8888887667777655
No 152
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.89 E-value=1e-22 Score=189.31 Aligned_cols=146 Identities=17% Similarity=0.218 Sum_probs=117.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---------------CCCCCCcccChhhhHh---------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS--------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---------------~~~~y~~~~~v~e~i~--------- 58 (247)
-+++++|.||||||||+|+|+|.++|++|+|.++|..... |++...|++||.||+.
T Consensus 35 EV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~ 114 (500)
T COG1129 35 EVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRF 114 (500)
T ss_pred eEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCC
Confidence 4789999999999999999999999999999999975431 5566677889988884
Q ss_pred -----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 025844 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (247)
Q Consensus 59 -----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~ 124 (247)
..++|+++++....... ...++-+++ +.||+|+.. +++++||||||+ |.....+.++ ++++
T Consensus 115 g~id~~~m~~~A~~~l~~lg~~~~~~~~--v~~LsiaqrQ~VeIArAl~~--~arllIlDEPTaaLt~~E~~~Lf-~~ir 189 (500)
T COG1129 115 GLIDRKAMRRRARELLARLGLDIDPDTL--VGDLSIAQRQMVEIARALSF--DARVLILDEPTAALTVKETERLF-DLIR 189 (500)
T ss_pred CccCHHHHHHHHHHHHHHcCCCCChhhh--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHH
Confidence 67788888875211111 233333322 899999999 999999999999 9999999999 9999
Q ss_pred HHHhCCCeEEEEEecccccccchhHHhhhhHHH
Q 025844 125 HLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (247)
Q Consensus 125 ~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~ 157 (247)
+|+++|.++++| ||.+.+.-.+++.+...
T Consensus 190 ~Lk~~Gv~ii~I----SHrl~Ei~~i~DritVl 218 (500)
T COG1129 190 RLKAQGVAIIYI----SHRLDEVFEIADRITVL 218 (500)
T ss_pred HHHhCCCEEEEE----cCcHHHHHHhcCEEEEE
Confidence 999999999877 58888888888744333
No 153
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=6.7e-23 Score=170.65 Aligned_cols=140 Identities=18% Similarity=0.287 Sum_probs=99.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCC-----ceEEEeccCCCCC---------CC------CCCcccChhhhHh----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVR-----RTMHIVNLDPAAE---------NF------DYPVAMDIRELIS---- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~-----G~v~i~g~d~~~~---------~~------~y~~~~~v~e~i~---- 58 (247)
-++++|||+|||||||+|++..+..... |+|.+.|.++... .+ |-+..++|+|++.
T Consensus 34 ~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r 113 (253)
T COG1117 34 KVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLR 113 (253)
T ss_pred ceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHH
Confidence 4789999999999999999999877654 9999999876331 11 1122378999886
Q ss_pred ------------HHHHHHHcCCCCCC--chhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 025844 59 ------------LEDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (247)
Q Consensus 59 ------------~~~~l~~~~L~~~~--~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (247)
+++.++...|-..- .+..+...+++|+ |+.|||+++. +|++|++||||+ |||.+...+- +
T Consensus 114 ~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv--~PeVlLmDEPtSALDPIsT~kIE-e 190 (253)
T COG1117 114 LHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAV--KPEVLLMDEPTSALDPISTLKIE-E 190 (253)
T ss_pred hhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhc--CCcEEEecCcccccCchhHHHHH-H
Confidence 34444444432110 0111112355554 4899999999 999999999999 9999998887 9
Q ss_pred HHHHHHhCCCeEEEEEecccccccchhHH
Q 025844 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKF 150 (247)
Q Consensus 122 ll~~l~~~~~~ii~v~l~d~~~~~d~~~~ 150 (247)
++.+|+ +..||++| +|.+......
T Consensus 191 Li~eLk-~~yTIviV----THnmqQAaRv 214 (253)
T COG1117 191 LITELK-KKYTIVIV----THNMQQAARV 214 (253)
T ss_pred HHHHHH-hccEEEEE----eCCHHHHHHH
Confidence 999996 56888877 3666544443
No 154
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=2.5e-22 Score=172.26 Aligned_cols=141 Identities=14% Similarity=0.137 Sum_probs=105.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC-----CCCCCC-------CcccChhhhHh------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-------PVAMDIRELIS------------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~-----~~~~~y-------~~~~~v~e~i~------------ 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+.. ...++| .+..++.+++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~ 106 (232)
T cd03300 27 EFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAE 106 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcCCCHHH
Confidence 478999999999999999999999999999999987542 122333 22446666653
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-C
Q 025844 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N 130 (247)
Q Consensus 59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~ 130 (247)
+.++++.+++.+..... ...++.|++ ++||++++. +|+++|+|||++ ||+.++..+. +++++++++ |
T Consensus 107 ~~~~~~~~l~~~~l~~~~~~~--~~~lS~G~~qrl~laral~~--~p~llllDEP~~gLD~~~~~~l~-~~l~~~~~~~~ 181 (232)
T cd03300 107 IKERVAEALDLVQLEGYANRK--PSQLSGGQQQRVAIARALVN--EPKVLLLDEPLGALDLKLRKDMQ-LELKRLQKELG 181 (232)
T ss_pred HHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcC
Confidence 34677788887644333 245666543 899999999 999999999999 9999999988 888888764 7
Q ss_pred CeEEEEEecccccccchhHHhh
Q 025844 131 FNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s 152 (247)
.+++++ +|...+...+++
T Consensus 182 ~tiii~----sh~~~~~~~~~d 199 (232)
T cd03300 182 ITFVFV----THDQEEALTMSD 199 (232)
T ss_pred CEEEEE----eCCHHHHHHhcC
Confidence 788666 355554444444
No 155
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=5.1e-23 Score=178.88 Aligned_cols=141 Identities=19% Similarity=0.338 Sum_probs=103.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-------CcccChhhhHh----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS---------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-------~~~~~v~e~i~---------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| .+..++.+++.
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~ 108 (255)
T PRK11231 29 KITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLW 108 (255)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhc
Confidence 3689999999999999999999999999999999865321 12222 22345555543
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
+.++++.+++.+..... ...+++|++ +.||++++. +|+++|+|||++ ||+.++..+. +++++
T Consensus 109 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~ 183 (255)
T PRK11231 109 GRLSAEDNARVNQAMEQTRINHLADRR--LTDLSGGQRQRAFLAMVLAQ--DTPVVLLDEPTTYLDINHQVELM-RLMRE 183 (255)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHH
Confidence 34566777776432222 234666543 899999999 999999999999 9999999988 88888
Q ss_pred HHhCCCeEEEEEecccccccchhHHhh
Q 025844 126 LKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 126 l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+++++.+++++ +|...+...+++
T Consensus 184 l~~~~~tiii~----tH~~~~~~~~~d 206 (255)
T PRK11231 184 LNTQGKTVVTV----LHDLNQASRYCD 206 (255)
T ss_pred HHHCCCEEEEE----ECCHHHHHHhcC
Confidence 87667777655 466665555555
No 156
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=3.4e-23 Score=177.87 Aligned_cols=156 Identities=17% Similarity=0.171 Sum_probs=117.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCC------CCC--------CcccChhhhHh----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAEN------FDY--------PVAMDIRELIS---------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~------~~y--------~~~~~v~e~i~---------- 58 (247)
-+++++|||||||||++|+++|++.|++|.|.++|.+|..+. +++ .-+..+.+.+.
T Consensus 51 ~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd 130 (325)
T COG4586 51 EIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPD 130 (325)
T ss_pred cEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCH
Confidence 478999999999999999999999999999999999996421 111 01222333222
Q ss_pred ------HHHHHHHcCCCCCCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-
Q 025844 59 ------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS- 128 (247)
Q Consensus 59 ------~~~~l~~~~L~~~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~- 128 (247)
.+..-+.+++++..... +..++-| ++..||.+|.+ +|++|+|||||- ||..++..+. +++++.++
T Consensus 131 ~~F~~r~~~l~eiLdl~~~lk~~--vr~LSlGqRmraeLaaaLLh--~p~VLfLDEpTvgLDV~aq~~ir-~Flke~n~~ 205 (325)
T COG4586 131 DEFAERLDFLTEILDLEGFLKWP--VRKLSLGQRMRAELAAALLH--PPKVLFLDEPTVGLDVNAQANIR-EFLKEYNEE 205 (325)
T ss_pred HHHHHHHHHHHHHhcchhhhhhh--hhhccchHHHHHHHHHHhcC--CCcEEEecCCccCcchhHHHHHH-HHHHHHHHh
Confidence 44555566777554333 4445544 45889999999 999999999998 9999999988 99999875
Q ss_pred CCCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCC
Q 025844 129 RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP 167 (247)
Q Consensus 129 ~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p 167 (247)
.+.|| +..+|.+.|...+|.++++...+.+.++.+
T Consensus 206 ~~aTV----llTTH~~~di~~lc~rv~~I~~Gqlv~dg~ 240 (325)
T COG4586 206 RQATV----LLTTHIFDDIATLCDRVLLIDQGQLVFDGT 240 (325)
T ss_pred hCceE----EEEecchhhHHHhhhheEEeeCCcEeeccc
Confidence 47777 456899999999999888777776665433
No 157
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.2e-22 Score=177.66 Aligned_cols=141 Identities=18% Similarity=0.374 Sum_probs=104.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-------CcccChhhhHh----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS---------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-------~~~~~v~e~i~---------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~ 113 (265)
T PRK10253 34 HFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLF 113 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccc
Confidence 3689999999999999999999999999999999876421 12222 12345555432
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
+.++++.+++....... ...+++|+ ++.||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 114 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~Gq~qrv~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~L~~ 188 (265)
T PRK10253 114 TRWRKEDEEAVTKAMQATGITHLADQS--VDTLSGGQRQRAWIAMVLAQ--ETAIMLLDEPTTWLDISHQIDLL-ELLSE 188 (265)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHhcCC--cccCChHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHH
Confidence 45677778886533222 24566654 3899999999 999999999999 9999999998 88888
Q ss_pred HHhC-CCeEEEEEecccccccchhHHhh
Q 025844 126 LKSR-NFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 126 l~~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+.++ +.+++++ +|.......+++
T Consensus 189 l~~~~~~tiii~----tH~~~~~~~~~d 212 (265)
T PRK10253 189 LNREKGYTLAAV----LHDLNQACRYAS 212 (265)
T ss_pred HHHhcCCEEEEE----eCCHHHHHHhCC
Confidence 8654 7777666 466655556655
No 158
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.5e-22 Score=177.35 Aligned_cols=129 Identities=13% Similarity=0.160 Sum_probs=98.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-------ccChhhhHh---------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-------AMDIRELIS--------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-------~~~v~e~i~--------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|+++|.+... +.++| ++ ..++.+++.
T Consensus 36 e~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~ 115 (269)
T PRK13648 36 QWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVP 115 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCC
Confidence 4789999999999999999999999999999999976531 22333 11 223444331
Q ss_pred -------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (247)
Q Consensus 59 -------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (247)
+.++++.+++.+..... ...++.|++ +.||++++. +|+++|+||||+ ||+.++..+. ++++++++
T Consensus 116 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~ 190 (269)
T PRK13648 116 YDEMHRRVSEALKQVDMLERADYE--PNALSGGQKQRVAIAGVLAL--NPSVIILDEATSMLDPDARQNLL-DLVRKVKS 190 (269)
T ss_pred HHHHHHHHHHHHHHcCCchhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence 45678888887643333 234665543 899999999 999999999999 9999999998 88888865
Q ss_pred C-CCeEEEE
Q 025844 129 R-NFNVCAV 136 (247)
Q Consensus 129 ~-~~~ii~v 136 (247)
+ |.+++++
T Consensus 191 ~~~~tiiiv 199 (269)
T PRK13648 191 EHNITIISI 199 (269)
T ss_pred hcCCEEEEE
Confidence 4 7787666
No 159
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=4.8e-23 Score=195.31 Aligned_cols=142 Identities=17% Similarity=0.185 Sum_probs=105.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC--CCceEEEeccCCCC--------CCCCC-------CcccChhhhHh-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~--~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~------- 58 (247)
-+++|+||||||||||+|+|+|+++| ++|+|.++|.+... ..++| .+.+++++++.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 111 (506)
T PRK13549 32 EIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITP 111 (506)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccc
Confidence 47899999999999999999999996 89999999876421 22333 22345555431
Q ss_pred ------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 025844 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (247)
Q Consensus 59 ------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (247)
++++++.+++....... ...+++|++ ++||++++. +|+++||||||+ ||+.++..+. +++
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGqkqrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l 186 (506)
T PRK13549 112 GGIMDYDAMYLRAQKLLAQLKLDINPATP--VGNLGLGQQQLVEIAKALNK--QARLLILDEPTASLTESETAVLL-DII 186 (506)
T ss_pred cCCcCHHHHHHHHHHHHHHcCCCCCcccc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHH
Confidence 46688889987544333 356777654 899999999 999999999999 9999999999 899
Q ss_pred HHHHhCCCeEEEEEecccccccchhHHhhh
Q 025844 124 DHLKSRNFNVCAVYLLDSQFITDVTKFISG 153 (247)
Q Consensus 124 ~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~ 153 (247)
++++++|.+++++ +|.+.....+++.
T Consensus 187 ~~l~~~~~tvi~~----tH~~~~~~~~~d~ 212 (506)
T PRK13549 187 RDLKAHGIACIYI----SHKLNEVKAISDT 212 (506)
T ss_pred HHHHHCCCEEEEE----eCcHHHHHHhcCE
Confidence 8887677787666 2444444444443
No 160
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.9e-23 Score=196.06 Aligned_cols=129 Identities=16% Similarity=0.163 Sum_probs=100.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-------CcccChhhhHh---------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~--------- 58 (247)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++| .+.+++++++.
T Consensus 32 e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 111 (510)
T PRK09700 32 EIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKV 111 (510)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhcccccccc
Confidence 4789999999999999999999999999999999866421 12333 12345555432
Q ss_pred --------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 025844 59 --------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (247)
Q Consensus 59 --------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (247)
+.++++.+|+....... ...+++|++ ++||++++. +|+++||||||+ ||+.++..+. +
T Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgG~~qrv~ia~al~~--~p~lllLDEPt~~LD~~~~~~l~-~ 186 (510)
T PRK09700 112 CGVNIIDWREMRVRAAMMLLRVGLKVDLDEK--VANLSISHKQMLEIAKTLML--DAKVIIMDEPTSSLTNKEVDYLF-L 186 (510)
T ss_pred ccccccCHHHHHHHHHHHHHHcCCCCCcccc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-H
Confidence 35577888887554333 346777654 999999999 999999999999 9999999999 8
Q ss_pred HHHHHHhCCCeEEEE
Q 025844 122 FVDHLKSRNFNVCAV 136 (247)
Q Consensus 122 ll~~l~~~~~~ii~v 136 (247)
++++++++|.+++++
T Consensus 187 ~l~~l~~~g~tiiiv 201 (510)
T PRK09700 187 IMNQLRKEGTAIVYI 201 (510)
T ss_pred HHHHHHhCCCEEEEE
Confidence 999987778887766
No 161
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.89 E-value=1e-22 Score=192.35 Aligned_cols=144 Identities=15% Similarity=0.173 Sum_probs=109.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc--------------ccChhhhH---
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV--------------AMDIRELI--- 57 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~--------------~~~v~e~i--- 57 (247)
-+++|+||||||||||+|+|+|+++|++|+|.+.|.++.. +.++| ++ ..++++++
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (490)
T PRK10938 30 DSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE 109 (490)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc
Confidence 3689999999999999999999999999999998765421 11222 11 24666654
Q ss_pred -----hHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 025844 58 -----SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (247)
Q Consensus 58 -----~~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (247)
.++++++.+++.+..... ...+++|++ ++||++++. +|+++||||||+ ||+.++..+. +++++++++
T Consensus 110 ~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~ 184 (490)
T PRK10938 110 VKDPARCEQLAQQFGITALLDRR--FKYLSTGETRKTLLCQALMS--EPDLLILDEPFDGLDVASRQQLA-ELLASLHQS 184 (490)
T ss_pred hhHHHHHHHHHHHcCCHhhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHhc
Confidence 266789999997643333 345777654 899999999 999999999999 9999999999 899998777
Q ss_pred CCeEEEEEecccccccchhHHhhhhH
Q 025844 130 NFNVCAVYLLDSQFITDVTKFISGCM 155 (247)
Q Consensus 130 ~~~ii~v~l~d~~~~~d~~~~~s~~l 155 (247)
|.+++++ +|.+.....+++.++
T Consensus 185 g~tvii~----tH~~~~~~~~~d~v~ 206 (490)
T PRK10938 185 GITLVLV----LNRFDEIPDFVQFAG 206 (490)
T ss_pred CCeEEEE----eCCHHHHHhhCCEEE
Confidence 7787666 366665556665443
No 162
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.89 E-value=2e-22 Score=172.05 Aligned_cols=129 Identities=22% Similarity=0.342 Sum_probs=95.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc---CCCceEEEeccCCCC----CCCCC-------CcccChhhhHhH---------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA----ENFDY-------PVAMDIRELISL--------- 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~---~~~G~v~i~g~d~~~----~~~~y-------~~~~~v~e~i~~--------- 59 (247)
-+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..+.| .+.+++++++..
T Consensus 34 e~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~ 113 (226)
T cd03234 34 QVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRK 113 (226)
T ss_pred eEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccc
Confidence 4789999999999999999999999 999999999976531 12222 334577776641
Q ss_pred ----------HH-HHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 60 ----------ED-VMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 60 ----------~~-~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
++ .++.+++.+..... ...++.|+ ++++|++++. +|+++|+|||++ ||+.++..+. +++++
T Consensus 114 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~illlDEP~~gLD~~~~~~~~-~~l~~ 188 (226)
T cd03234 114 SSDAIRKKRVEDVLLRDLALTRIGGNL--VKGISGGERRRVSIAVQLLW--DPKVLILDEPTSGLDSFTALNLV-STLSQ 188 (226)
T ss_pred cchHHHHHHHHHHHHHhhcchhhhccc--ccCcCHHHHHHHHHHHHHHh--CCCEEEEeCCCcCCCHHHHHHHH-HHHHH
Confidence 12 45555554432221 23455554 3899999999 999999999999 9999999998 88888
Q ss_pred HHhCCCeEEEE
Q 025844 126 LKSRNFNVCAV 136 (247)
Q Consensus 126 l~~~~~~ii~v 136 (247)
+++.+.+++++
T Consensus 189 ~~~~~~tiii~ 199 (226)
T cd03234 189 LARRNRIVILT 199 (226)
T ss_pred HHHCCCEEEEE
Confidence 87667777655
No 163
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.89 E-value=2.2e-22 Score=171.12 Aligned_cols=129 Identities=17% Similarity=0.260 Sum_probs=98.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCC-------CcccChhhhHh-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y-------~~~~~v~e~i~------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++.+++.
T Consensus 32 ~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~ 111 (220)
T TIGR02982 32 EIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP 111 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc
Confidence 4789999999999999999999999999999999875421 12332 22345554432
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
+.++++.+++.+..... ...++.+++ ++||++++. +|+++|+|||++ ||+.++..+. +++++
T Consensus 112 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~lS~G~~qrv~laral~~--~p~illlDEP~~~LD~~~~~~l~-~~l~~ 186 (220)
T TIGR02982 112 NLSYQEARERARAMLEAVGLGDHLDYY--PHNLSGGQKQRVAIARALVH--RPKLVLADEPTAALDSKSGRDVV-ELMQK 186 (220)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhhcC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCcCCHHHHHHHH-HHHHH
Confidence 56788888887543333 234555543 899999999 999999999999 9999999988 88888
Q ss_pred HHh-CCCeEEEE
Q 025844 126 LKS-RNFNVCAV 136 (247)
Q Consensus 126 l~~-~~~~ii~v 136 (247)
+.+ .+.+++++
T Consensus 187 ~~~~~~~tii~~ 198 (220)
T TIGR02982 187 LAREQGCTILIV 198 (220)
T ss_pred HHHHcCCEEEEE
Confidence 865 47777666
No 164
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.89 E-value=2.5e-22 Score=172.82 Aligned_cols=141 Identities=17% Similarity=0.232 Sum_probs=104.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----CCCCC-------CcccChhhhHh------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----~~~~y-------~~~~~v~e~i~------------ 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++.+++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~ 106 (237)
T TIGR00968 27 SLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAK 106 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHH
Confidence 4789999999999999999999999999999999876532 22222 22346666553
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-C
Q 025844 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N 130 (247)
Q Consensus 59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~ 130 (247)
+.++++.+++.+..... ...++.|++ +.+|++++. +|+++|+|||++ ||+.++..+. +++++++++ +
T Consensus 107 ~~~~~~~~l~~~~l~~~~~~~--~~~lS~G~~qrl~laral~~--~p~llllDEP~~~LD~~~~~~~~-~~l~~~~~~~~ 181 (237)
T TIGR00968 107 IKARVEELLELVQLEGLGDRY--PNQLSGGQRQRVALARALAV--EPQVLLLDEPFGALDAKVRKELR-SWLRKLHDEVH 181 (237)
T ss_pred HHHHHHHHHHHcCCHhHhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 35677788886533222 234555543 899999999 999999999999 9999999998 888888665 7
Q ss_pred CeEEEEEecccccccchhHHhh
Q 025844 131 FNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s 152 (247)
.+++++ +|...+...+++
T Consensus 182 ~tvli~----sH~~~~~~~~~d 199 (237)
T TIGR00968 182 VTTVFV----THDQEEAMEVAD 199 (237)
T ss_pred CEEEEE----eCCHHHHHhhcC
Confidence 777665 455554445444
No 165
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.3e-22 Score=178.08 Aligned_cols=129 Identities=14% Similarity=0.197 Sum_probs=99.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC--------CcccChhhhHh---------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY--------PVAMDIRELIS--------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y--------~~~~~v~e~i~--------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..|+++++.
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~ 115 (271)
T PRK13632 36 EYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVP 115 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCC
Confidence 3789999999999999999999999999999999976531 22333 12347777664
Q ss_pred -------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (247)
Q Consensus 59 -------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (247)
+.++++.+++.+..... ...+++|++ +.||++++. +|+++|+|||++ ||+.+++.+. ++++++++
T Consensus 116 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~lllLDEP~~gLD~~~~~~l~-~~l~~~~~ 190 (271)
T PRK13632 116 PKKMKDIIDDLAKKVGMEDYLDKE--PQNLSGGQKQRVAIASVLAL--NPEIIIFDESTSMLDPKGKREIK-KIMVDLRK 190 (271)
T ss_pred HHHHHHHHHHHHHHcCCHHHhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence 34567788886543222 234666543 899999999 999999999999 9999999998 88888866
Q ss_pred C-CCeEEEE
Q 025844 129 R-NFNVCAV 136 (247)
Q Consensus 129 ~-~~~ii~v 136 (247)
+ +.+++++
T Consensus 191 ~~~~tiii~ 199 (271)
T PRK13632 191 TRKKTLISI 199 (271)
T ss_pred hcCcEEEEE
Confidence 5 4777665
No 166
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.89 E-value=4.3e-23 Score=170.50 Aligned_cols=136 Identities=19% Similarity=0.267 Sum_probs=98.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHh-HHHHHHHcCCCCCCchhhhHHhh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELIS-LEDVMEELGLGPNGGLIYCMEHL 81 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~-~~~~l~~~~L~~~~~~~~~~~~l 81 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+....... ..+..+. +-++++.+++.+..... ...+
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~-----~~~~~i~~~~q~l~~~gl~~~~~~~--~~~L 98 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPK-----ELARKIAYVPQALELLGLAHLADRP--FNEL 98 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHH-----HHHHHHhHHHHHHHHcCCHhHhcCC--cccC
Confidence 46899999999999999999999999999999998765321100 1111121 23378888887543222 2345
Q ss_pred hhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCeEEEEEecccccccchhHHhh
Q 025844 82 EDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 82 ~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+.|+ +++||++++. +|+++|+||||+ ||+.++..+. +++++++++ +.+++++ +|...+...+++
T Consensus 99 S~G~~qrl~laral~~--~p~llllDEP~~~LD~~~~~~~~-~~l~~~~~~~~~tiii~----sh~~~~~~~~~d 166 (180)
T cd03214 99 SGGERQRVLLARALAQ--EPPILLLDEPTSHLDIAHQIELL-ELLRRLARERGKTVVMV----LHDLNLAARYAD 166 (180)
T ss_pred CHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhcCCEEEEE----eCCHHHHHHhCC
Confidence 5554 3899999999 999999999999 9999999988 888888665 6777655 355444444444
No 167
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.89 E-value=8.4e-23 Score=193.80 Aligned_cols=141 Identities=15% Similarity=0.185 Sum_probs=106.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC----------CcccChhhhHh------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY----------PVAMDIRELIS------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y----------~~~~~v~e~i~------ 58 (247)
-+++|+||||||||||+++|+|+++|++|+|+++|.++.. ..++| .+.+++.+++.
T Consensus 290 e~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~ 369 (510)
T PRK09700 290 EILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLK 369 (510)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccc
Confidence 4689999999999999999999999999999999865421 12333 22345555432
Q ss_pred -------------------HHHHHHHcCCC-CCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhH
Q 025844 59 -------------------LEDVMEELGLG-PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTH 115 (247)
Q Consensus 59 -------------------~~~~l~~~~L~-~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~ 115 (247)
++++++.+++. ...... ...+++|++ +.||++++. +|++|||||||+ ||+.++
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGq~qrv~lAral~~--~p~lLlLDEPt~~LD~~~~ 445 (510)
T PRK09700 370 DGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQN--ITELSGGNQQKVLISKWLCC--CPEVIIFDEPTRGIDVGAK 445 (510)
T ss_pred cccccccccccChHHHHHHHHHHHHhcCCCCCCccCc--cccCChHHHHHHHHHHHHhc--CCCEEEECCCCCCcCHHHH
Confidence 35678888885 333332 245777654 899999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 116 VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 116 ~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
..+. +++++++++|.+++++ +|.......+++
T Consensus 446 ~~l~-~~l~~l~~~g~tvi~v----sHd~~~~~~~~d 477 (510)
T PRK09700 446 AEIY-KVMRQLADDGKVILMV----SSELPEIITVCD 477 (510)
T ss_pred HHHH-HHHHHHHHCCCEEEEE----cCCHHHHHhhCC
Confidence 9999 8999987778888666 466665666655
No 168
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.89 E-value=3.4e-22 Score=173.66 Aligned_cols=143 Identities=15% Similarity=0.229 Sum_probs=102.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC----CCceEEEeccCCCC-----CCCCC---------CcccChhhhH-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET----VRRTMHIVNLDPAA-----ENFDY---------PVAMDIRELI------- 57 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~----~~G~v~i~g~d~~~-----~~~~y---------~~~~~v~e~i------- 57 (247)
-+++|+||||||||||+++|+|+++| ++|+|+++|.++.. ..+.| .+..++.+++
T Consensus 30 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~ 109 (254)
T PRK10418 30 RVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL 109 (254)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHHHc
Confidence 37899999999999999999999999 99999999876421 12222 1223433332
Q ss_pred -------hHHHHHHHcCCCCCCc-hhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844 58 -------SLEDVMEELGLGPNGG-LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (247)
Q Consensus 58 -------~~~~~l~~~~L~~~~~-~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (247)
.+.++++.+++.+... .......+++|++ +.||++++. +|+++||||||+ ||+.++..+. ++++++
T Consensus 110 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lLlLDEPt~~LD~~~~~~l~-~~L~~~ 186 (254)
T PRK10418 110 GKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLC--EAPFIIADEPTTDLDVVAQARIL-DLLESI 186 (254)
T ss_pred CCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhc--CCCEEEEeCCCcccCHHHHHHHH-HHHHHH
Confidence 1566888888875210 0111234666543 899999999 999999999999 9999999988 888888
Q ss_pred Hh-CCCeEEEEEecccccccchhHHhh
Q 025844 127 KS-RNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 127 ~~-~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
.+ .|.+++++ +|...+...+++
T Consensus 187 ~~~~g~til~~----sH~~~~~~~~~d 209 (254)
T PRK10418 187 VQKRALGMLLV----THDMGVVARLAD 209 (254)
T ss_pred HHhcCcEEEEE----ecCHHHHHHhCC
Confidence 65 47787666 465555555544
No 169
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.4e-22 Score=189.89 Aligned_cols=143 Identities=12% Similarity=0.187 Sum_probs=106.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-------CcccChhhhHh---------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~--------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| .+..++.+++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~ 104 (491)
T PRK10982 25 SIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGM 104 (491)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhccccccccc
Confidence 4789999999999999999999999999999999976421 22333 22345655432
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
++++++.+++....... ...+++|++ ++||++++. +|++||+||||+ ||+.++..+. +++++
T Consensus 105 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGq~qrv~lA~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~ 179 (491)
T PRK10982 105 FVDQDKMYRDTKAIFDELDIDIDPRAK--VATLSVSQMQMIEIAKAFSY--NAKIVIMDEPTSSLTEKEVNHLF-TIIRK 179 (491)
T ss_pred ccCHHHHHHHHHHHHHHcCCCCCccCc--hhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCCCCCHHHHHHHH-HHHHH
Confidence 45677788886543333 356777654 899999999 999999999999 9999999998 88888
Q ss_pred HHhCCCeEEEEEecccccccchhHHhhhh
Q 025844 126 LKSRNFNVCAVYLLDSQFITDVTKFISGC 154 (247)
Q Consensus 126 l~~~~~~ii~v~l~d~~~~~d~~~~~s~~ 154 (247)
+++.|.+++++ +|...+...+++.+
T Consensus 180 l~~~g~tvii~----tH~~~~~~~~~d~i 204 (491)
T PRK10982 180 LKERGCGIVYI----SHKMEEIFQLCDEI 204 (491)
T ss_pred HHhCCCEEEEE----ecCHHHHHHhCCEE
Confidence 87778888666 35544444555433
No 170
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.89 E-value=1.7e-22 Score=172.19 Aligned_cols=130 Identities=18% Similarity=0.232 Sum_probs=96.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe--cc--CCC-----------CCCCCC-------CcccChhhhHh--
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV--NL--DPA-----------AENFDY-------PVAMDIRELIS-- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~--g~--d~~-----------~~~~~y-------~~~~~v~e~i~-- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++ |. +.. ...++| .+..++++++.
T Consensus 35 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 114 (224)
T TIGR02324 35 ECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEP 114 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHH
Confidence 3689999999999999999999999999999997 32 321 112333 22345555542
Q ss_pred --------------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 025844 59 --------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (247)
Q Consensus 59 --------------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (247)
+.++++.+++.+..... ....++.|+ ++.||++++. +|+++|+||||+ ||+.++..+. +
T Consensus 115 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LS~G~~qrl~laral~~--~p~llllDEPt~~LD~~~~~~l~-~ 190 (224)
T TIGR02324 115 LLERGVPREAARARARELLARLNIPERLWHL-PPATFSGGEQQRVNIARGFIA--DYPILLLDEPTASLDAANRQVVV-E 190 (224)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhhhC-CcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-H
Confidence 35577788886421111 123456554 3899999999 999999999999 9999999998 8
Q ss_pred HHHHHHhCCCeEEEE
Q 025844 122 FVDHLKSRNFNVCAV 136 (247)
Q Consensus 122 ll~~l~~~~~~ii~v 136 (247)
++++++++|.+++++
T Consensus 191 ~l~~~~~~g~tii~v 205 (224)
T TIGR02324 191 LIAEAKARGAALIGI 205 (224)
T ss_pred HHHHHHhcCCEEEEE
Confidence 888887668887666
No 171
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=3.6e-23 Score=180.88 Aligned_cols=159 Identities=19% Similarity=0.219 Sum_probs=122.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------------------CCCCCCcccChhhhHh------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------------ENFDYPVAMDIRELIS------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------------------~~~~y~~~~~v~e~i~------ 58 (247)
-+.+|+|-+|||||||+|++.++++|+.|+|.++|.|+.. |+++..|..||.+|+.
T Consensus 55 eIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~ 134 (386)
T COG4175 55 EIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ 134 (386)
T ss_pred eEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec
Confidence 4678999999999999999999999999999999988743 6677778889998875
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
+.++++.+||........ +.+++|++ +.|||||+. +|++|++|||++ |||-.+.++..++++-
T Consensus 135 Gv~~~er~~~a~~~l~~VgL~~~~~~yp--~eLSGGMqQRVGLARAla~--~~~IlLMDEaFSALDPLIR~~mQdeLl~L 210 (386)
T COG4175 135 GVPKAEREERALEALELVGLEGYADKYP--NELSGGMQQRVGLARALAN--DPDILLMDEAFSALDPLIRTEMQDELLEL 210 (386)
T ss_pred CCCHHHHHHHHHHHHHHcCchhhhhcCc--ccccchHHHHHHHHHHHcc--CCCEEEecCchhhcChHHHHHHHHHHHHH
Confidence 788999999988765553 56777754 899999999 999999999999 9999999988444444
Q ss_pred HHhCCCeEEEEEecccccccchhHHhhhhH-HHhHHHhhccCCee
Q 025844 126 LKSRNFNVCAVYLLDSQFITDVTKFISGCM-ASLSAMVQLELPHV 169 (247)
Q Consensus 126 l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l-~~~~~~~~~~~p~i 169 (247)
-++.++||++| +|.+.+.-.+-+... +--+..+..|+|..
T Consensus 211 q~~l~KTIvFi----tHDLdEAlriG~rIaimkdG~ivQ~Gtp~e 251 (386)
T COG4175 211 QAKLKKTIVFI----THDLDEALRIGDRIAIMKDGEIVQVGTPEE 251 (386)
T ss_pred HHHhCCeEEEE----ecCHHHHHhccceEEEecCCeEEEeCCHHH
Confidence 44557888777 355554444443332 23344445555553
No 172
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=4.9e-23 Score=169.88 Aligned_cols=117 Identities=21% Similarity=0.231 Sum_probs=85.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---------CCCCC-CcccChhhhHhHHHHHHHcCCCCCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-PVAMDIRELISLEDVMEELGLGPNG 72 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---------~~~~y-~~~~~v~e~i~~~~~l~~~~L~~~~ 72 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| +++.......++.+.+...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------ 100 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------ 100 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec------
Confidence 4789999999999999999999999999999999865421 12223 1111111111222221110
Q ss_pred chhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025844 73 GLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (247)
Q Consensus 73 ~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v 136 (247)
++.| +++.||++++. +|+++|+|||++ ||+.++..+. +++++++++ +.+++++
T Consensus 101 --------lS~G~~qr~~la~al~~--~p~llilDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tiii~ 157 (178)
T cd03229 101 --------LSGGQQQRVALARALAM--DPDVLLLDEPTSALDPITRREVR-ALLKSLQAQLGITVVLV 157 (178)
T ss_pred --------CCHHHHHHHHHHHHHHC--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEE
Confidence 3333 34899999999 999999999999 9999999998 888888766 6777666
No 173
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.2e-22 Score=174.67 Aligned_cols=141 Identities=17% Similarity=0.200 Sum_probs=104.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----CCCCC-------CcccChhhhHh------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----~~~~y-------~~~~~v~e~i~------------ 58 (247)
-+++|+||||||||||+++|+|+++|++|+|+++|.++.. ..+.| .+..++.+++.
T Consensus 26 e~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~ 105 (235)
T cd03299 26 DYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKE 105 (235)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHH
Confidence 4789999999999999999999999999999999976532 12222 23456666553
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-C
Q 025844 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N 130 (247)
Q Consensus 59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~ 130 (247)
+.++++.+++.+..... ...+++|+ +++||++++. +|+++++|||++ ||+.++..+. ++++++.++ +
T Consensus 106 ~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~l~~~~~~~~ 180 (235)
T cd03299 106 IERKVLEIAEMLGIDHLLNRK--PETLSGGEQQRVAIARALVV--NPKILLLDEPFSALDVRTKEKLR-EELKKIRKEFG 180 (235)
T ss_pred HHHHHHHHHHHcCChhHHhcC--cccCCHHHHHHHHHHHHHHc--CCCEEEECCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 34677788886543322 23466554 3899999999 999999999999 9999999988 888887654 7
Q ss_pred CeEEEEEecccccccchhHHhh
Q 025844 131 FNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s 152 (247)
.+++++ +|...+...+++
T Consensus 181 ~tili~----tH~~~~~~~~~d 198 (235)
T cd03299 181 VTVLHV----THDFEEAWALAD 198 (235)
T ss_pred CEEEEE----ecCHHHHHHhCC
Confidence 787655 455544444444
No 174
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.89 E-value=3e-22 Score=173.17 Aligned_cols=140 Identities=19% Similarity=0.255 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCC-----CceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHh----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~-----~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~---- 58 (247)
-+++|+||||||||||+++|+|+++|+ +|+|.++|.+... +.++| ++ ..++.+++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~ 107 (247)
T TIGR00972 28 QVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPR 107 (247)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCCCCHHHHHHhHHH
Confidence 478999999999999999999999998 9999999876531 22333 11 146666553
Q ss_pred -------------HHHHHHHcCCC----CCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 025844 59 -------------LEDVMEELGLG----PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (247)
Q Consensus 59 -------------~~~~l~~~~L~----~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (247)
+.++++.+|+. ...... ...+++|++ +.||++++. +|+++|+||||+ ||+.++..+
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l 183 (247)
T TIGR00972 108 LHGIKDKKELDEIVEESLKKAALWDEVKDRLHDS--ALGLSGGQQQRLCIARALAV--EPEVLLLDEPTSALDPIATGKI 183 (247)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHH
Confidence 34567778886 221111 234666543 899999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
. ++++++++ +.+++++ +|...+...+++
T Consensus 184 ~-~~l~~~~~-~~tiiiv----sH~~~~~~~~~d 211 (247)
T TIGR00972 184 E-ELIQELKK-KYTIVIV----THNMQQAARISD 211 (247)
T ss_pred H-HHHHHHHh-cCeEEEE----ecCHHHHHHhCC
Confidence 8 88888866 4666555 455555555544
No 175
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.89 E-value=3.1e-22 Score=174.64 Aligned_cols=141 Identities=14% Similarity=0.161 Sum_probs=102.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCC---CceEEEeccCCCC------------CCCCC-------CcccChhhhHh--
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA------------ENFDY-------PVAMDIRELIS-- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~---~G~v~i~g~d~~~------------~~~~y-------~~~~~v~e~i~-- 58 (247)
-+++|+||||||||||+++|+|+++|+ +|+|+++|.++.. ..+.| .+..++.+++.
T Consensus 31 e~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 110 (262)
T PRK09984 31 EMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIG 110 (262)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhh
Confidence 378999999999999999999999986 4999999965421 11233 23356665542
Q ss_pred ----------------------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHH
Q 025844 59 ----------------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELF 113 (247)
Q Consensus 59 ----------------------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~ 113 (247)
++++++.+++.+..... ...++.|+ ++.||++++. +|+++|+||||+ ||+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~ 186 (262)
T PRK09984 111 ALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQR--VSTLSGGQQQRVAIARALMQ--QAKVILADEPIASLDPE 186 (262)
T ss_pred hcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCC--ccccCHHHHHHHHHHHHHhc--CCCEEEecCccccCCHH
Confidence 45677778886432222 23466554 3899999999 999999999999 9999
Q ss_pred hHHHHHHHHHHHHHh-CCCeEEEEEecccccccchhHHhh
Q 025844 114 THVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 114 ~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++..+. ++++++++ .|.+++++ +|.......+++
T Consensus 187 ~~~~l~-~~l~~~~~~~g~tvii~----tH~~~~~~~~~d 221 (262)
T PRK09984 187 SARIVM-DTLRDINQNDGITVVVT----LHQVDYALRYCE 221 (262)
T ss_pred HHHHHH-HHHHHHHHhcCCEEEEE----eCCHHHHHHhCC
Confidence 999998 88888865 47788666 355544444444
No 176
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.88 E-value=7.9e-23 Score=177.64 Aligned_cols=141 Identities=18% Similarity=0.236 Sum_probs=102.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC-C--CCCCCCCCcc--cChhhhH---------hHHHHHHHcCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-P--AAENFDYPVA--MDIRELI---------SLEDVMEELGL 68 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d-~--~~~~~~y~~~--~~v~e~i---------~~~~~l~~~~L 68 (247)
-+++|+||||||||||+++|+|+++|++|+|.+.+.. . ..+...+.+. .++.+++ .+.++++.+++
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl 110 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQA 110 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHHHcCC
Confidence 3689999999999999999999999999999987631 1 0122111121 2455543 25677888888
Q ss_pred CCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCeEEEEEecccccc
Q 025844 69 GPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFI 144 (247)
Q Consensus 69 ~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v~l~d~~~~ 144 (247)
.+..... ...+++|++ +.||++++. +|+++|+||||+ ||+.++..+. ++++++.++ +.+++++ +|..
T Consensus 111 ~~~~~~~--~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~g~tiiiv----sH~~ 181 (251)
T PRK09544 111 GHLIDAP--MQKLSGGETQRVLLARALLN--RPQLLVLDEPTQGVDVNGQVALY-DLIDQLRRELDCAVLMV----SHDL 181 (251)
T ss_pred hHHHhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHhcCCEEEEE----ecCH
Confidence 7543322 345666654 899999999 999999999999 9999999988 888888654 7787666 3555
Q ss_pred cchhHHhh
Q 025844 145 TDVTKFIS 152 (247)
Q Consensus 145 ~d~~~~~s 152 (247)
.+...+++
T Consensus 182 ~~i~~~~d 189 (251)
T PRK09544 182 HLVMAKTD 189 (251)
T ss_pred HHHHHhCC
Confidence 55555555
No 177
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=7.6e-23 Score=177.13 Aligned_cols=142 Identities=19% Similarity=0.207 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCCC-------CCCCC-------CcccChhhhHh-----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS----- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~~-------~~~~y-------~~~~~v~e~i~----- 58 (247)
-+++|+||||||||||+++|+|+++| ++|+|.++|.+... ..++| .+..++.+++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~ 109 (250)
T PRK14247 30 TITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKL 109 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHh
Confidence 37899999999999999999999974 69999999976421 22333 23456776653
Q ss_pred -------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (247)
Q Consensus 59 -------------~~~~l~~~~L~~~--~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (247)
+.++++.+++.+. .........+++|++ +++|++++. +|+++|+||||+ ||+.++..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~--~p~lllLDEP~~~LD~~~~~~l~- 186 (250)
T PRK14247 110 NRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAF--QPEVLLADEPTANLDPENTAKIE- 186 (250)
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-
Confidence 2456667777431 011111245666543 899999999 999999999999 9999999998
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++++++ +.+++++ +|.......+++
T Consensus 187 ~~l~~~~~-~~tiii~----sH~~~~~~~~~d 213 (250)
T PRK14247 187 SLFLELKK-DMTIVLV----THFPQQAARISD 213 (250)
T ss_pred HHHHHHhc-CCEEEEE----eCCHHHHHHhcC
Confidence 88888854 6677555 455554444444
No 178
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2e-22 Score=190.96 Aligned_cols=129 Identities=16% Similarity=0.194 Sum_probs=100.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-------CcccChhhhHh---------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~--------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|+++|.++.. ..++| .+..++.+++.
T Consensus 31 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~ 110 (501)
T PRK11288 31 QVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGG 110 (501)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccC
Confidence 4689999999999999999999999999999999876421 22333 22345655542
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
+.++++.+++.+..... ...+++|++ ++||++++. +|+++||||||+ ||+.++..+. +++++
T Consensus 111 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~ 185 (501)
T PRK11288 111 IVNRRLLNYEAREQLEHLGVDIDPDTP--LKYLSIGQRQMVEIAKALAR--NARVIAFDEPTSSLSAREIEQLF-RVIRE 185 (501)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCcCCc--hhhCCHHHHHHHHHHHHHHh--CCCEEEEcCCCCCCCHHHHHHHH-HHHHH
Confidence 45678888887543333 345777654 899999999 999999999999 9999999998 88888
Q ss_pred HHhCCCeEEEE
Q 025844 126 LKSRNFNVCAV 136 (247)
Q Consensus 126 l~~~~~~ii~v 136 (247)
++++|.+++++
T Consensus 186 ~~~~g~tiiii 196 (501)
T PRK11288 186 LRAEGRVILYV 196 (501)
T ss_pred HHhCCCEEEEE
Confidence 87678887766
No 179
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.6e-22 Score=174.04 Aligned_cols=142 Identities=18% Similarity=0.250 Sum_probs=98.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHh----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~---- 58 (247)
-+++|+||||||||||+++|+|+++ |++|+|.++|.+... ..++| ++ ..++++++.
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 112 (253)
T PRK14242 33 QVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLR 112 (253)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHH
Confidence 4789999999999999999999874 589999999876421 22333 11 136666654
Q ss_pred -------------HHHHHHHcCCCCCC--chhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844 59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (247)
Q Consensus 59 -------------~~~~l~~~~L~~~~--~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (247)
++++++.+++.+.. ........+++|++ +.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~- 189 (253)
T PRK14242 113 VNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAV--EPEVLLMDEPASALDPIATQKIE- 189 (253)
T ss_pred HcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-
Confidence 23345666764310 00011234565543 899999999 999999999999 9999999988
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++++++ +.+++++ +|...+...+++
T Consensus 190 ~~l~~~~~-~~tvii~----tH~~~~~~~~~d 216 (253)
T PRK14242 190 ELIHELKA-RYTIIIV----THNMQQAARVSD 216 (253)
T ss_pred HHHHHHhc-CCeEEEE----EecHHHHHHhCC
Confidence 88888854 6677655 355554444444
No 180
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.88 E-value=4.2e-22 Score=173.41 Aligned_cols=141 Identities=15% Similarity=0.191 Sum_probs=102.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC-----CCC-----------CCCCC-Cc--------ccChhhhH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-----PAA-----------ENFDY-PV--------AMDIRELI 57 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d-----~~~-----------~~~~y-~~--------~~~v~e~i 57 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+ +.. ..+.| ++ ..++.+++
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i 112 (258)
T PRK11701 33 EVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNI 112 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHH
Confidence 4789999999999999999999999999999999976 321 12333 11 12333332
Q ss_pred -----------------hHHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHH
Q 025844 58 -----------------SLEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHV 116 (247)
Q Consensus 58 -----------------~~~~~l~~~~L~~-~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~ 116 (247)
.+.++++.+++.+ ..... ...+++|++ ++||++++. +|+++|+||||+ ||+.+..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LS~Gq~qrl~laral~~--~p~llllDEPt~~LD~~~~~ 188 (258)
T PRK11701 113 GERLMAVGARHYGDIRATAGDWLERVEIDAARIDDL--PTTFSGGMQQRLQIARNLVT--HPRLVFMDEPTGGLDVSVQA 188 (258)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCC--CccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHH
Confidence 1456788888863 21121 234666543 899999999 999999999999 9999999
Q ss_pred HHHHHHHHHHHhC-CCeEEEEEecccccccchhHHhh
Q 025844 117 PVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 117 ~~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
.+. ++++++.++ |.+++++ +|.......+++
T Consensus 189 ~l~-~~l~~~~~~~~~tii~i----sH~~~~~~~~~d 220 (258)
T PRK11701 189 RLL-DLLRGLVRELGLAVVIV----THDLAVARLLAH 220 (258)
T ss_pred HHH-HHHHHHHHhcCcEEEEE----eCCHHHHHHhcC
Confidence 988 888887654 7777666 455554444444
No 181
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.88 E-value=6e-23 Score=180.22 Aligned_cols=141 Identities=15% Similarity=0.275 Sum_probs=102.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----CCCCC-Ccc--------cChhhhH------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDY-PVA--------MDIRELI------------ 57 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----~~~~y-~~~--------~~v~e~i------------ 57 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| +++ .++++++
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 113 (272)
T PRK15056 34 SIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLR 113 (272)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheeccccccccccc
Confidence 3689999999999999999999999999999999865321 11222 111 1222221
Q ss_pred --------hHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844 58 --------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (247)
Q Consensus 58 --------~~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (247)
.+.++++.+++.+..... ...+++|++ +.||++++. +|+++|+|||++ ||+.+++.+. ++++++
T Consensus 114 ~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgG~~qrv~laraL~~--~p~llllDEPt~~LD~~~~~~l~-~~L~~~ 188 (272)
T PRK15056 114 RAKKRDRQIVTAALARVDMVEFRHRQ--IGELSGGQKKRVFLARAIAQ--QGQVILLDEPFTGVDVKTEARII-SLLREL 188 (272)
T ss_pred CCCHHHHHHHHHHHHHcCChhHhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHH
Confidence 245678888887543332 234666543 899999999 999999999999 9999999998 888888
Q ss_pred HhCCCeEEEEEecccccccchhHHhh
Q 025844 127 KSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+++|.+++++ +|...+...+++
T Consensus 189 ~~~g~tviiv----sH~~~~~~~~~d 210 (272)
T PRK15056 189 RDEGKTMLVS----THNLGSVTEFCD 210 (272)
T ss_pred HhCCCEEEEE----eCCHHHHHHhCC
Confidence 7667787666 455554455554
No 182
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=4.9e-22 Score=178.81 Aligned_cols=143 Identities=13% Similarity=0.206 Sum_probs=105.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc----CCCceEEEeccCCCC-----------CCCCC---------CcccChhhhHh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE----TVRRTMHIVNLDPAA-----------ENFDY---------PVAMDIRELIS 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~----~~~G~v~i~g~d~~~-----------~~~~y---------~~~~~v~e~i~ 58 (247)
-+++|+||||||||||+++|+|+++ +++|+|.++|.++.. ..+.| .+.+++.+++.
T Consensus 34 e~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~ 113 (326)
T PRK11022 34 EVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIM 113 (326)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHH
Confidence 3689999999999999999999997 489999999977531 12333 23345543321
Q ss_pred -----------------HHHHHHHcCCCCCCc-hhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHH
Q 025844 59 -----------------LEDVMEELGLGPNGG-LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (247)
Q Consensus 59 -----------------~~~~l~~~~L~~~~~-~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~ 117 (247)
+.++++.+||.+... .......+++|++ ++||++++. +|++||+||||+ ||+.++..
T Consensus 114 ~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~--~P~llilDEPts~LD~~~~~~ 191 (326)
T PRK11022 114 EAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIAC--RPKLLIADEPTTALDVTIQAQ 191 (326)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCCCCCHHHHHH
Confidence 567888999974211 1111245677654 999999999 999999999999 99999999
Q ss_pred HHHHHHHHHHh-CCCeEEEEEecccccccchhHHhh
Q 025844 118 VLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 118 ~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++ ++++++++ .|.+++++ +|.+.....+++
T Consensus 192 il-~lL~~l~~~~g~til~i----THdl~~~~~~ad 222 (326)
T PRK11022 192 II-ELLLELQQKENMALVLI----THDLALVAEAAH 222 (326)
T ss_pred HH-HHHHHHHHhcCCEEEEE----eCCHHHHHHhCC
Confidence 99 99999875 48888766 466555555555
No 183
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=4.5e-23 Score=181.77 Aligned_cols=129 Identities=16% Similarity=0.207 Sum_probs=99.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-Cc-------ccChhhhHh--------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV-------AMDIRELIS-------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-~~-------~~~v~e~i~-------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++.+++.
T Consensus 37 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~ 116 (280)
T PRK13633 37 EFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGI 116 (280)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCC
Confidence 3689999999999999999999999999999999876531 12333 11 124555442
Q ss_pred --------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (247)
Q Consensus 59 --------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (247)
++++++.+|+.+..... ...+++|++ +.||++++. +|+++|+|||++ ||+.++..+. +++++++
T Consensus 117 ~~~~~~~~~~~~l~~~gL~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~l~~l~ 191 (280)
T PRK13633 117 PPEEIRERVDESLKKVGMYEYRRHA--PHLLSGGQKQRVAIAGILAM--RPECIIFDEPTAMLDPSGRREVV-NTIKELN 191 (280)
T ss_pred CHHHHHHHHHHHHHHCCCHhHhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHH
Confidence 45678888887644333 245666543 899999999 999999999999 9999999998 8899886
Q ss_pred h-CCCeEEEE
Q 025844 128 S-RNFNVCAV 136 (247)
Q Consensus 128 ~-~~~~ii~v 136 (247)
+ .|.+++++
T Consensus 192 ~~~g~tillv 201 (280)
T PRK13633 192 KKYGITIILI 201 (280)
T ss_pred HhcCCEEEEE
Confidence 5 48888666
No 184
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2e-22 Score=190.94 Aligned_cols=141 Identities=16% Similarity=0.198 Sum_probs=106.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC----------CcccChhhhH-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY----------PVAMDIRELI------- 57 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y----------~~~~~v~e~i------- 57 (247)
-+++|+||||||||||+++|+|+++|++|+|+++|.+... ..++| .+..++.+++
T Consensus 280 e~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~ 359 (501)
T PRK11288 280 EIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRH 359 (501)
T ss_pred cEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchh
Confidence 4789999999999999999999999999999999865421 12222 1224454443
Q ss_pred ---------------hHHHHHHHcCCC-CCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 025844 58 ---------------SLEDVMEELGLG-PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (247)
Q Consensus 58 ---------------~~~~~l~~~~L~-~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (247)
.++++++.+++. ...... ...+++|++ +.||++++. +|++|||||||+ ||+.+++.+
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGq~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~l 435 (501)
T PRK11288 360 HLRAGCLINNRWEAENADRFIRSLNIKTPSREQL--IMNLSGGNQQKAILGRWLSE--DMKVILLDEPTRGIDVGAKHEI 435 (501)
T ss_pred hcccccccChHHHHHHHHHHHHhcCcccCCccCc--cccCCHHHHHHHHHHHHHcc--CCCEEEEcCCCCCCCHhHHHHH
Confidence 145677888884 333333 345776654 899999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+ ++++++++.|.+++++ +|.......+++
T Consensus 436 ~-~~l~~l~~~g~tviiv----sHd~~~~~~~~d 464 (501)
T PRK11288 436 Y-NVIYELAAQGVAVLFV----SSDLPEVLGVAD 464 (501)
T ss_pred H-HHHHHHHhCCCEEEEE----CCCHHHHHhhCC
Confidence 9 9999998778888666 576666666665
No 185
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.88 E-value=6.9e-23 Score=191.75 Aligned_cols=156 Identities=19% Similarity=0.238 Sum_probs=122.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC--CC----------------CCCCCCcccChhhhHh------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AA----------------ENFDYPVAMDIRELIS------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~--~~----------------~~~~y~~~~~v~e~i~------ 58 (247)
-+++|+|++||||||+.|+|+|+.+|++|.|.++|.+. .. +.....|.+||.+.+.
T Consensus 318 E~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~ 397 (539)
T COG1123 318 ETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIH 397 (539)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhh
Confidence 47899999999999999999999999999999999762 10 1122256778888775
Q ss_pred -----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 025844 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (247)
Q Consensus 59 -----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~ 124 (247)
+.+.++.++|++.-..+++ +.+++|++ ++|||||+. +|+++|+|||++ ||+..+.++. +++.
T Consensus 398 ~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP-~elSGGQrQRvaIARALa~--~P~lli~DEp~SaLDvsvqa~Vl-nLl~ 473 (539)
T COG1123 398 GGGSGAERRARVAELLELVGLPPEFLDRYP-HELSGGQRQRVAIARALAL--EPKLLILDEPVSALDVSVQAQVL-NLLK 473 (539)
T ss_pred cccchHHHHHHHHHHHHHcCCCHHHHhcCc-hhcCcchhHHHHHHHHHhc--CCCEEEecCCccccCHHHHHHHH-HHHH
Confidence 6778999999986444444 46777764 999999999 999999999999 9999999999 9999
Q ss_pred HHHhC-CCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccch
Q 025844 125 HLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 181 (247)
Q Consensus 125 ~l~~~-~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~ 181 (247)
+++++ |.+.++| +|.+.-...+|+ .+.|+.+..+++..
T Consensus 474 ~lq~e~g~t~lfI----SHDl~vV~~i~d---------------rv~vm~~G~iVE~G 512 (539)
T COG1123 474 DLQEELGLTYLFI----SHDLAVVRYIAD---------------RVAVMYDGRIVEEG 512 (539)
T ss_pred HHHHHhCCEEEEE----eCCHHHHHhhCc---------------eEEEEECCeEEEeC
Confidence 99764 8888777 466655555555 55566666666544
No 186
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.88 E-value=1.6e-22 Score=191.91 Aligned_cols=141 Identities=14% Similarity=0.240 Sum_probs=106.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-C---------cccChhhhH-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-P---------VAMDIRELI------- 57 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-~---------~~~~v~e~i------- 57 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| + +..++.+++
T Consensus 290 e~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~ 369 (510)
T PRK15439 290 EILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNR 369 (510)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhh
Confidence 4789999999999999999999999999999999865421 12333 1 123554432
Q ss_pred ------------hHHHHHHHcCCC-CCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 025844 58 ------------SLEDVMEELGLG-PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (247)
Q Consensus 58 ------------~~~~~l~~~~L~-~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (247)
.++++++.+++. ...... ...+++|++ ++||++++. +|++|||||||+ ||+.+++.+. +
T Consensus 370 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgG~kqrl~la~al~~--~p~lLlLDEPt~gLD~~~~~~l~-~ 444 (510)
T PRK15439 370 RGFWIKPARENAVLERYRRALNIKFNHAEQA--ARTLSGGNQQKVLIAKCLEA--SPQLLIVDEPTRGVDVSARNDIY-Q 444 (510)
T ss_pred hccccChHHHHHHHHHHHHHcCCCCCCccCc--cccCCcHHHHHHHHHHHHhh--CCCEEEECCCCcCcChhHHHHHH-H
Confidence 145678888986 333333 245776654 899999999 999999999999 9999999998 8
Q ss_pred HHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 122 ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++++++|.++|++ +|.+.....+++
T Consensus 445 ~l~~l~~~g~tiIiv----sHd~~~i~~~~d 471 (510)
T PRK15439 445 LIRSIAAQNVAVLFI----SSDLEEIEQMAD 471 (510)
T ss_pred HHHHHHhCCCEEEEE----CCCHHHHHHhCC
Confidence 999987778887666 466666666655
No 187
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=3.7e-22 Score=176.14 Aligned_cols=129 Identities=18% Similarity=0.225 Sum_probs=100.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCC---ceEEEeccCCCC-------CCCCC--------CcccChhhhHh------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVR---RTMHIVNLDPAA-------ENFDY--------PVAMDIRELIS------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~---G~v~i~g~d~~~-------~~~~y--------~~~~~v~e~i~------ 58 (247)
-+++|+||||||||||+++|+|+++|++ |+|.++|.+... ..++| .+..++.+++.
T Consensus 34 e~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~ 113 (282)
T PRK13640 34 SWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR 113 (282)
T ss_pred CEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC
Confidence 4789999999999999999999999987 899999976532 22333 12346777663
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
+.++++.+++.+..... ...+++|++ +.||++++. +|+++|+|||++ ||+.++..+. +++++
T Consensus 114 ~~~~~~~~~~~~~~l~~~~L~~~~~~~--~~~LS~G~~qrv~laral~~--~P~llllDEPt~gLD~~~~~~l~-~~l~~ 188 (282)
T PRK13640 114 AVPRPEMIKIVRDVLADVGMLDYIDSE--PANLSGGQKQRVAIAGILAV--EPKIIILDESTSMLDPAGKEQIL-KLIRK 188 (282)
T ss_pred CCCHHHHHHHHHHHHHHCCChhHhcCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHH
Confidence 34577888887643333 235666543 899999999 999999999999 9999999998 88888
Q ss_pred HHhC-CCeEEEE
Q 025844 126 LKSR-NFNVCAV 136 (247)
Q Consensus 126 l~~~-~~~ii~v 136 (247)
+++. |.+|+++
T Consensus 189 l~~~~g~tvli~ 200 (282)
T PRK13640 189 LKKKNNLTVISI 200 (282)
T ss_pred HHHhcCCEEEEE
Confidence 8654 7888666
No 188
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.88 E-value=4.8e-22 Score=174.68 Aligned_cols=141 Identities=20% Similarity=0.175 Sum_probs=103.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCC--------CceEEEeccCCCC-------CCCCC-------CcccChhhhHh--
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETV--------RRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS-- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~--------~G~v~i~g~d~~~-------~~~~y-------~~~~~v~e~i~-- 58 (247)
-+++|+||||||||||+++|+|+++|+ +|+|.++|.+... ..+.| ....++++++.
T Consensus 28 e~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~ 107 (272)
T PRK13547 28 RVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLG 107 (272)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhc
Confidence 368999999999999999999999998 8999999865421 11122 12346666542
Q ss_pred ------------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhh---------cCCCCCEEEEeCCCc
Q 025844 59 ------------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELD---------NYLDDDYLVFDCPGQ 109 (247)
Q Consensus 59 ------------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~---------~~~~p~~lilDEPt~ 109 (247)
+.++++.+++.+..... ...+++|++ +.||++++ . +|+++|+||||+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~laral~~~~~~~~~~~--~p~lllLDEPt~ 183 (272)
T PRK13547 108 RYPHARRAGALTHRDGEIAWQALALAGATALVGRD--VTTLSGGELARVQFARVLAQLWPPHDAAQ--PPRYLLLDEPTA 183 (272)
T ss_pred ccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC--cccCCHHHHHHHHHHHHHhccccccccCC--CCCEEEEcCccc
Confidence 34567778886543322 234666543 89999999 5 899999999999
Q ss_pred -ccHHhHHHHHHHHHHHHHhC-CCeEEEEEecccccccchhHHhh
Q 025844 110 -IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 110 -LD~~~~~~~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
||+.++..+. ++++++.++ +.+++++ +|...+...+++
T Consensus 184 ~LD~~~~~~l~-~~l~~~~~~~~~tviii----sH~~~~~~~~~d 223 (272)
T PRK13547 184 ALDLAHQHRLL-DTVRRLARDWNLGVLAI----VHDPNLAARHAD 223 (272)
T ss_pred cCCHHHHHHHH-HHHHHHHHhcCCEEEEE----ECCHHHHHHhCC
Confidence 9999999998 888888764 7887666 355555555555
No 189
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.88 E-value=6.9e-22 Score=171.42 Aligned_cols=141 Identities=16% Similarity=0.178 Sum_probs=101.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC-----CCC-----------CCCCC-Cc--------ccChhhhH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-----PAA-----------ENFDY-PV--------AMDIRELI 57 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d-----~~~-----------~~~~y-~~--------~~~v~e~i 57 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+ +.. ..+.| ++ ..++.+++
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i 109 (253)
T TIGR02323 30 EVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANI 109 (253)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHH
Confidence 4789999999999999999999999999999999865 211 12333 11 12333332
Q ss_pred -----------------hHHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHH
Q 025844 58 -----------------SLEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHV 116 (247)
Q Consensus 58 -----------------~~~~~l~~~~L~~-~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~ 116 (247)
.+.++++.+++.+ ..... ...+++|++ ++||++++. +|+++|+|||++ ||+.++.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~--~~~LSgG~~qrv~laral~~--~p~vlllDEP~~~LD~~~~~ 185 (253)
T TIGR02323 110 GERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDL--PRAFSGGMQQRLQIARNLVT--RPRLVFMDEPTGGLDVSVQA 185 (253)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcC--chhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHH
Confidence 1456788888863 22111 245666543 999999999 999999999999 9999999
Q ss_pred HHHHHHHHHHHh-CCCeEEEEEecccccccchhHHhh
Q 025844 117 PVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 117 ~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
.+. ++++++.+ .+.+++++. |.......+++
T Consensus 186 ~l~-~~l~~~~~~~~~tii~vs----H~~~~~~~~~d 217 (253)
T TIGR02323 186 RLL-DLLRGLVRDLGLAVIIVT----HDLGVARLLAQ 217 (253)
T ss_pred HHH-HHHHHHHHhcCCEEEEEe----CCHHHHHHhcC
Confidence 998 88888755 478887663 55444444444
No 190
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=2.3e-23 Score=179.43 Aligned_cols=167 Identities=15% Similarity=0.203 Sum_probs=136.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC-----------CCCCCCC-------CcccChhhhHh------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-----------AAENFDY-------PVAMDIRELIS------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~-----------~~~~~~y-------~~~~~v~e~i~------ 58 (247)
-++++.|++||||||++++|+|+.+|+.|.|.++|.-. ....++| +|.++|+.|+.
T Consensus 25 GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~ 104 (352)
T COG4148 25 GITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKS 104 (352)
T ss_pred ceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhccc
Confidence 47899999999999999999999999999999998422 2244555 45678888775
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhh--hHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-C
Q 025844 59 ----LEDVMEELGLGPNGGLIYCMEHLED--NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N 130 (247)
Q Consensus 59 ----~~~~l~~~~L~~~~~~~~~~~~l~~--~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~ 130 (247)
.+++.+.+|++|...+... .+++ +++++|+|||.. .|++|++|||.+ ||...+++++ -++++|.++ +
T Consensus 105 ~~~~fd~iv~lLGI~hLL~R~P~--~LSGGEkQRVAIGRALLt--~P~LLLmDEPLaSLD~~RK~Eil-pylERL~~e~~ 179 (352)
T COG4148 105 MRAQFDQLVALLGIEHLLDRYPG--TLSGGEKQRVAIGRALLT--APELLLMDEPLASLDLPRKREIL-PYLERLRDEIN 179 (352)
T ss_pred chHhHHHHHHHhCcHHHHhhCCC--ccCcchhhHHHHHHHHhc--CCCeeeecCchhhcccchhhHHH-HHHHHHHHhcC
Confidence 6788889999998666543 3444 467999999999 999999999998 9999999999 899999764 7
Q ss_pred CeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccc
Q 025844 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 178 (247)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll 178 (247)
..|+.| +|.+.+.....+.+++.-.+.++...|...|++..|..
T Consensus 180 IPIlYV----SHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~~~~ 223 (352)
T COG4148 180 IPILYV----SHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSPDFP 223 (352)
T ss_pred CCEEEE----ecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCcccC
Confidence 778766 58888888888888877777777777777777776664
No 191
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=7.1e-22 Score=172.05 Aligned_cols=142 Identities=19% Similarity=0.300 Sum_probs=101.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCC---------CCCCCC-Cc-----ccChhhhHh----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS---- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~---------~~~~~y-~~-----~~~v~e~i~---- 58 (247)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++. .+.++| ++ ..++++++.
T Consensus 39 e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 118 (258)
T PRK14268 39 SVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPR 118 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCcccHHHHHHHHHH
Confidence 36899999999999999999999985 7999999886542 122333 11 246666654
Q ss_pred ------------HHHHHHHcCCCCC--CchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 025844 59 ------------LEDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (247)
Q Consensus 59 ------------~~~~l~~~~L~~~--~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (247)
+.++++.+++... .........+++|+ ++.||++++. +|+++|+||||+ ||+.++..+. +
T Consensus 119 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~ 195 (258)
T PRK14268 119 IHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAV--KPKIILFDEPTSALDPISTARIE-D 195 (258)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcccCHHHHHHHH-H
Confidence 3456777777321 00111234566654 3899999999 999999999999 9999999988 8
Q ss_pred HHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 122 ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+++++++ +.+++++ +|...+...+++
T Consensus 196 ~l~~l~~-~~tiiiv----sH~~~~~~~~~d 221 (258)
T PRK14268 196 LIMNLKK-DYTIVIV----THNMQQAARISD 221 (258)
T ss_pred HHHHHhh-CCEEEEE----ECCHHHHHHhCC
Confidence 8888854 6777655 465555555554
No 192
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.88 E-value=4.9e-22 Score=179.07 Aligned_cols=142 Identities=14% Similarity=0.192 Sum_probs=104.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCC---CceEEEeccCCCC-----------CCCCC---------CcccChhhhHh-
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA-----------ENFDY---------PVAMDIRELIS- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~---~G~v~i~g~d~~~-----------~~~~y---------~~~~~v~e~i~- 58 (247)
-+++|+|+||||||||+++|+|+++|. +|+|.++|.+... ..+.| .+.+++.+++.
T Consensus 43 e~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~ 122 (330)
T PRK09473 43 ETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLME 122 (330)
T ss_pred CEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHH
Confidence 478999999999999999999999996 9999999977521 12333 23345554431
Q ss_pred ----------------HHHHHHHcCCCCCCc--hhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHH
Q 025844 59 ----------------LEDVMEELGLGPNGG--LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (247)
Q Consensus 59 ----------------~~~~l~~~~L~~~~~--~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~ 117 (247)
+.++++.+++.+... ..+ ...+++|++ ++||++++. +|++||+||||+ ||+.++..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~-p~~LSgG~~QRv~IArAL~~--~P~llilDEPts~LD~~~~~~ 199 (330)
T PRK09473 123 VLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMY-PHEFSGGMRQRVMIAMALLC--RPKLLIADEPTTALDVTVQAQ 199 (330)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCC-cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHH
Confidence 456788888864211 111 245666654 999999999 999999999999 99999999
Q ss_pred HHHHHHHHHHhC-CCeEEEEEecccccccchhHHhh
Q 025844 118 VLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 118 ~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++ +++++++++ |.++++| +|.+.....+++
T Consensus 200 i~-~lL~~l~~~~g~til~i----THdl~~~~~~~D 230 (330)
T PRK09473 200 IM-TLLNELKREFNTAIIMI----THDLGVVAGICD 230 (330)
T ss_pred HH-HHHHHHHHHcCCEEEEE----ECCHHHHHHhCC
Confidence 99 899998764 7888766 355554444444
No 193
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.88 E-value=3.8e-22 Score=166.88 Aligned_cols=116 Identities=19% Similarity=0.257 Sum_probs=89.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC--cCCCceEEEeccCCCC----CCCCC-------CcccChhhhHhHHHHHHHcCCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAA----ENFDY-------PVAMDIRELISLEDVMEELGLG 69 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l--~~~~G~v~i~g~d~~~----~~~~y-------~~~~~v~e~i~~~~~l~~~~L~ 69 (247)
-+++|+||||||||||+++|+|++ +|++|+|.++|.++.. ..+.| .+..++++++.....+ .
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~---~-- 110 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL---R-- 110 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh---c--
Confidence 478999999999999999999999 9999999999987532 22333 2345666665432111 0
Q ss_pred CCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 70 PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 70 ~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
.+++|+ ++.||++++. +|+++|+|||++ ||+.++..+. ++++++++++.+++++
T Consensus 111 ----------~LS~G~~qrv~laral~~--~p~illlDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~ 167 (194)
T cd03213 111 ----------GLSGGERKRVSIALELVS--NPSLLFLDEPTSGLDSSSALQVM-SLLRRLADTGRTIICS 167 (194)
T ss_pred ----------cCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 244443 4899999999 999999999999 9999999988 8888887667787666
No 194
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.88 E-value=2.5e-22 Score=190.18 Aligned_cols=141 Identities=16% Similarity=0.260 Sum_probs=106.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-C---------cccChhhhHh------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-P---------VAMDIRELIS------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-~---------~~~~v~e~i~------ 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| + +.+++.+++.
T Consensus 279 e~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~ 358 (501)
T PRK10762 279 EILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRY 358 (501)
T ss_pred cEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhh
Confidence 4789999999999999999999999999999999865421 22333 1 2245555331
Q ss_pred ----------------HHHHHHHcCCC-CCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 025844 59 ----------------LEDVMEELGLG-PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (247)
Q Consensus 59 ----------------~~~~l~~~~L~-~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (247)
++++++.+++. +..... ...+++|++ +.||++++. +|+++||||||+ ||+.++..+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGekqrv~lA~al~~--~p~lllLDEPt~~LD~~~~~~l 434 (501)
T PRK10762 359 FSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQA--IGLLSGGNQQKVAIARGLMT--RPKVLILDEPTRGVDVGAKKEI 434 (501)
T ss_pred hcccccccCHHHHHHHHHHHHHhcCCCCCCccCc--hhhCCHHHHHHHHHHHHHhh--CCCEEEEcCCCCCCCHhHHHHH
Confidence 45677888884 333333 345777654 899999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
. +++++++++|.+++++ +|.+.....+++
T Consensus 435 ~-~~l~~~~~~g~tviiv----tHd~~~~~~~~d 463 (501)
T PRK10762 435 Y-QLINQFKAEGLSIILV----SSEMPEVLGMSD 463 (501)
T ss_pred H-HHHHHHHHCCCEEEEE----cCCHHHHHhhCC
Confidence 9 8999987778887666 466655555555
No 195
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=6.2e-22 Score=178.43 Aligned_cols=142 Identities=15% Similarity=0.240 Sum_probs=104.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc----CCCceEEEeccCCCC-----------CCCCC---------CcccChhhhH-
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE----TVRRTMHIVNLDPAA-----------ENFDY---------PVAMDIRELI- 57 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~----~~~G~v~i~g~d~~~-----------~~~~y---------~~~~~v~e~i- 57 (247)
-+++|+|+||||||||+++|+|+++ +++|+|.++|.++.. ..+.| .+..++.+++
T Consensus 34 e~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~ 113 (330)
T PRK15093 34 EIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLM 113 (330)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHH
Confidence 3689999999999999999999996 588999999976521 12333 1223443322
Q ss_pred ---------------------hHHHHHHHcCCCCCCc--hhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-cc
Q 025844 58 ---------------------SLEDVMEELGLGPNGG--LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IE 111 (247)
Q Consensus 58 ---------------------~~~~~l~~~~L~~~~~--~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD 111 (247)
.+.++++.+||.+... ..+ ...+++|++ ++||++++. +|++||+||||+ ||
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~-p~~LSgG~~QRv~iArAL~~--~P~llilDEPts~LD 190 (330)
T PRK15093 114 QNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSF-PYELTEGECQKVMIAIALAN--QPRLLIADEPTNAME 190 (330)
T ss_pred HHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCC-chhCCHHHHHHHHHHHHHHC--CCCEEEEeCCCCcCC
Confidence 2456788889975311 111 245666654 899999999 999999999999 99
Q ss_pred HHhHHHHHHHHHHHHHhC-CCeEEEEEecccccccchhHHhh
Q 025844 112 LFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 112 ~~~~~~~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+.++..++ +++++++++ |.++++| +|.+.....+++
T Consensus 191 ~~~~~~i~-~lL~~l~~~~g~tii~i----tHdl~~v~~~~d 227 (330)
T PRK15093 191 PTTQAQIF-RLLTRLNQNNNTTILLI----SHDLQMLSQWAD 227 (330)
T ss_pred HHHHHHHH-HHHHHHHHhcCCEEEEE----ECCHHHHHHhCC
Confidence 99999999 999998764 8888766 466665656555
No 196
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=4.8e-22 Score=174.97 Aligned_cols=129 Identities=13% Similarity=0.148 Sum_probs=98.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-C-------cccChhhhHh---------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-------VAMDIRELIS--------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~-------~~~~v~e~i~--------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| + ...++.+++.
T Consensus 34 e~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~ 113 (277)
T PRK13642 34 EWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIP 113 (277)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCC
Confidence 3689999999999999999999999999999999976531 12333 1 1236666553
Q ss_pred -------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (247)
Q Consensus 59 -------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (247)
++++++.+++....... ...+++|+ ++.||++++. +|+++|+|||++ ||+.++..+. ++++++++
T Consensus 114 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~lAraL~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~l~~ 188 (277)
T PRK13642 114 REEMIKRVDEALLAVNMLDFKTRE--PARLSGGQKQRVAVAGIIAL--RPEIIILDESTSMLDPTGRQEIM-RVIHEIKE 188 (277)
T ss_pred HHHHHHHHHHHHHHCCCHhHhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence 34567777876543322 23466654 3899999999 999999999999 9999999999 88888876
Q ss_pred C-CCeEEEE
Q 025844 129 R-NFNVCAV 136 (247)
Q Consensus 129 ~-~~~ii~v 136 (247)
+ |.+++++
T Consensus 189 ~~g~tiil~ 197 (277)
T PRK13642 189 KYQLTVLSI 197 (277)
T ss_pred hcCCEEEEE
Confidence 4 8888666
No 197
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=4.3e-22 Score=172.85 Aligned_cols=142 Identities=18% Similarity=0.249 Sum_probs=98.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCC---------CCCCCC-Cc-----ccChhhhHh----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS---- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~---------~~~~~y-~~-----~~~v~e~i~---- 58 (247)
-+++|+||||||||||+++|+|+++| ++|+|+++|.+.. ...++| ++ ..++++++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~ 113 (254)
T PRK14273 34 SITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPK 113 (254)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccccCcHHHHHHHHHH
Confidence 36899999999999999999999987 4899999987542 122333 11 256776653
Q ss_pred -------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (247)
Q Consensus 59 -------------~~~~l~~~~L~~~--~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (247)
+.++++.+++.+. .........+++|++ ++||++++. +|+++|+||||+ ||+.++..++
T Consensus 114 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~- 190 (254)
T PRK14273 114 IHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAI--EPNVILMDEPTSALDPISTGKIE- 190 (254)
T ss_pred hcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcccCHHHHHHHH-
Confidence 2344555565311 001111234565543 899999999 999999999999 9999999998
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++++++ +.+++++ +|.......+++
T Consensus 191 ~~l~~~~~-~~tvii~----sH~~~~~~~~~d 217 (254)
T PRK14273 191 ELIINLKE-SYTIIIV----THNMQQAGRISD 217 (254)
T ss_pred HHHHHHhc-CCEEEEE----eCCHHHHHHhCC
Confidence 88888854 6677655 355554444444
No 198
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.88 E-value=5.6e-22 Score=162.83 Aligned_cols=108 Identities=23% Similarity=0.292 Sum_probs=84.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cccc-----ChhhhHhHHHHHHHcCCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAM-----DIRELISLEDVMEELGLG 69 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~~~-----~v~e~i~~~~~l~~~~L~ 69 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| +++. ++++++
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l------------ 96 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI------------ 96 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHC------------
Confidence 3689999999999999999999999999999999875421 22333 2211 333322
Q ss_pred CCCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 70 PNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 70 ~~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
+++| +++.||++++. +|+++|+||||+ ||+.++..+. +++++++++|.+++++
T Consensus 97 -----------LS~G~~qrv~la~al~~--~p~~lllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~ 152 (173)
T cd03246 97 -----------LSGGQRQRLGLARALYG--NPRILVLDEPNSHLDVEGERALN-QAIAALKAAGATRIVI 152 (173)
T ss_pred -----------cCHHHHHHHHHHHHHhc--CCCEEEEECCccccCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 3333 44999999999 999999999999 9999999998 8888887667787666
No 199
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.88 E-value=2e-22 Score=189.27 Aligned_cols=145 Identities=17% Similarity=0.118 Sum_probs=108.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC-CCCCCCCcccChhhhHh----------------HHHHHHH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-AENFDYPVAMDIRELIS----------------LEDVMEE 65 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~-~~~~~y~~~~~v~e~i~----------------~~~~l~~ 65 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+.. .....+.+.+++++++. +.++++.
T Consensus 51 EivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~ 130 (549)
T PRK13545 51 EIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEF 130 (549)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999886521 11122344567777653 2356777
Q ss_pred cCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccc
Q 025844 66 LGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ 142 (247)
Q Consensus 66 ~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~ 142 (247)
+++.+..... ...+++|++ ++||++++. +|+++||||||+ ||+.+++.++ ++++++++.|.+++++ +|
T Consensus 131 lgL~~~ld~~--~~~LSGGQrQRVaLArAL~~--~P~LLLLDEPTsgLD~~sr~~Ll-elL~el~~~G~TIIIV----SH 201 (549)
T PRK13545 131 ADIGKFIYQP--VKTYSSGMKSRLGFAISVHI--NPDILVIDEALSVGDQTFTKKCL-DKMNEFKEQGKTIFFI----SH 201 (549)
T ss_pred cCChhHhhCC--cccCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHHHHHHhCCCEEEEE----EC
Confidence 8886543332 245666654 899999999 999999999999 9999999998 8888887667788666 45
Q ss_pred cccchhHHhhhhHH
Q 025844 143 FITDVTKFISGCMA 156 (247)
Q Consensus 143 ~~~d~~~~~s~~l~ 156 (247)
.......+|+.++.
T Consensus 202 dl~~i~~l~DrIiv 215 (549)
T PRK13545 202 SLSQVKSFCTKALW 215 (549)
T ss_pred CHHHHHHhCCEEEE
Confidence 55555555554433
No 200
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.88 E-value=6.1e-22 Score=169.13 Aligned_cols=129 Identities=18% Similarity=0.155 Sum_probs=97.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh-----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~ 113 (225)
T PRK10247 34 EFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPD 113 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHHHHhHHhhcCCChH
Confidence 3689999999999999999999999999999999865421 12333 11 236776653
Q ss_pred ---HHHHHHHcCCCC-CCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 025844 59 ---LEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (247)
Q Consensus 59 ---~~~~l~~~~L~~-~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (247)
++++++.+++.. ..... ...++.|+ ++.||++++. +|+++|+||||+ ||+.++..+. ++++++.+ .|
T Consensus 114 ~~~~~~~l~~~~l~~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~ 188 (225)
T PRK10247 114 PAIFLDDLERFALPDTILTKN--IAELSGGEKQRISLIRNLQF--MPKVLLLDEITSALDESNKHNVN-EIIHRYVREQN 188 (225)
T ss_pred HHHHHHHHHHcCCChHHhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 456788888853 21111 23455554 3899999999 999999999999 9999999888 88888865 47
Q ss_pred CeEEEE
Q 025844 131 FNVCAV 136 (247)
Q Consensus 131 ~~ii~v 136 (247)
.+++++
T Consensus 189 ~tvii~ 194 (225)
T PRK10247 189 IAVLWV 194 (225)
T ss_pred CEEEEE
Confidence 777666
No 201
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.6e-22 Score=190.37 Aligned_cols=141 Identities=14% Similarity=0.221 Sum_probs=105.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc-CCCceEEEeccCCCC--------CCCCC----------CcccChhhhHh-----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIVNLDPAA--------ENFDY----------PVAMDIRELIS----- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~-~~~G~v~i~g~d~~~--------~~~~y----------~~~~~v~e~i~----- 58 (247)
-+++|+||||||||||+|+|+|+++ |++|+|.++|.++.. ..++| .+.+++.+++.
T Consensus 289 e~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~ 368 (506)
T PRK13549 289 EILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALD 368 (506)
T ss_pred cEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhh
Confidence 3789999999999999999999998 599999999865421 12333 12345544331
Q ss_pred ----------------HHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 025844 59 ----------------LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (247)
Q Consensus 59 ----------------~~~~l~~~~L~~-~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (247)
++++++.+++.+ ..... ...+++|++ +.||++++. +|++|||||||+ ||+.+++.+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgG~kqrv~lA~al~~--~p~lllLDEPt~~LD~~~~~~l 444 (506)
T PRK13549 369 RFTGGSRIDDAAELKTILESIQRLKVKTASPELA--IARLSGGNQQKAVLAKCLLL--NPKILILDEPTRGIDVGAKYEI 444 (506)
T ss_pred hhccCcccChHHHHHHHHHHHHhcCccCCCcccc--cccCCHHHHHHHHHHHHHhh--CCCEEEEcCCCCCcCHhHHHHH
Confidence 456778888853 33322 345776654 899999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
. ++++.++++|.+|+++ +|.+.....+++
T Consensus 445 ~-~~l~~l~~~g~tvi~~----sHd~~~~~~~~d 473 (506)
T PRK13549 445 Y-KLINQLVQQGVAIIVI----SSELPEVLGLSD 473 (506)
T ss_pred H-HHHHHHHHCCCEEEEE----CCCHHHHHHhCC
Confidence 8 8999987778888666 576666666665
No 202
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.1e-21 Score=170.25 Aligned_cols=142 Identities=17% Similarity=0.197 Sum_probs=100.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCC---------CCCCCC-------CcccChhhhHh---
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA---------AENFDY-------PVAMDIRELIS--- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~---------~~~~~y-------~~~~~v~e~i~--- 58 (247)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++. ...++| .+..++.+++.
T Consensus 31 e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 110 (253)
T PRK14267 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGV 110 (253)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHH
Confidence 37899999999999999999999987 4999999987653 122333 22356666653
Q ss_pred ---------------HHHHHHHcCCCCCC--chhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 025844 59 ---------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (247)
Q Consensus 59 ---------------~~~~l~~~~L~~~~--~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (247)
+.++++.+++.+.. ........+++|++ +.||++++. +|+++|+|||++ ||+.++..+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l 188 (253)
T PRK14267 111 KLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAM--KPKILLMDEPTANIDPVGTAKI 188 (253)
T ss_pred HhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHH
Confidence 23456667764310 01112345666543 899999999 999999999999 999999998
Q ss_pred HHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
. ++++++.+ +.+++++ +|...+...+++
T Consensus 189 ~-~~l~~~~~-~~tiii~----sH~~~~~~~~~d 216 (253)
T PRK14267 189 E-ELLFELKK-EYTIVLV----THSPAQAARVSD 216 (253)
T ss_pred H-HHHHHHhh-CCEEEEE----ECCHHHHHhhCC
Confidence 8 88888855 5677655 455554444444
No 203
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=6.2e-22 Score=169.64 Aligned_cols=128 Identities=20% Similarity=0.204 Sum_probs=91.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh-----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| ++ ..+++|++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~ 108 (234)
T cd03251 29 ETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEV 108 (234)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHHhhccCCCCCHHHH
Confidence 3689999999999999999999999999999999865421 12333 11 246666663
Q ss_pred --------HHHHHHHc--CCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 59 --------LEDVMEEL--GLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 59 --------~~~~l~~~--~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
+.++++.+ ++....... ...++.|+ ++.||++++. +|+++|+|||++ ||+.++..+. +++++
T Consensus 109 ~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~lllLDEP~~~LD~~~~~~l~-~~l~~ 183 (234)
T cd03251 109 EEAARAANAHEFIMELPEGYDTVIGER--GVKLSGGQRQRIAIARALLK--DPPILILDEATSALDTESERLVQ-AALER 183 (234)
T ss_pred HHHHHHcCcHHHHHhcccCcceeeccC--CCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHH
Confidence 12222222 232221111 23455554 3899999999 999999999999 9999999988 88888
Q ss_pred HHhCCCeEEEE
Q 025844 126 LKSRNFNVCAV 136 (247)
Q Consensus 126 l~~~~~~ii~v 136 (247)
+.+ +.+++++
T Consensus 184 ~~~-~~tii~~ 193 (234)
T cd03251 184 LMK-NRTTFVI 193 (234)
T ss_pred hcC-CCEEEEE
Confidence 854 7777655
No 204
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.88 E-value=5.2e-22 Score=192.57 Aligned_cols=141 Identities=16% Similarity=0.191 Sum_probs=107.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCC---------CcccChhhhHh-----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY---------PVAMDIRELIS----- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y---------~~~~~v~e~i~----- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|+++|.++.. ..++| .+.+++.+++.
T Consensus 351 e~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~ 430 (623)
T PRK10261 351 ETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRV 430 (623)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHH
Confidence 3789999999999999999999999999999999875421 12333 23346665542
Q ss_pred ------------HHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 025844 59 ------------LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (247)
Q Consensus 59 ------------~~~~l~~~~L~~-~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (247)
+.++++.+|+.+ ..... ...+++|++ ++||++++. +|++||+||||+ ||+.++..++ ++
T Consensus 431 ~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~--~~~LSgGqrQRv~iAraL~~--~p~llllDEPts~LD~~~~~~i~-~l 505 (623)
T PRK10261 431 HGLLPGKAAAARVAWLLERVGLLPEHAWRY--PHEFSGGQRQRICIARALAL--NPKVIIADEAVSALDVSIRGQII-NL 505 (623)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCHHHhhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HH
Confidence 456788889863 22222 245777654 899999999 999999999999 9999999999 99
Q ss_pred HHHHHhC-CCeEEEEEecccccccchhHHhh
Q 025844 123 VDHLKSR-NFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 123 l~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+++++++ |.++++| +|.+.....+++
T Consensus 506 l~~l~~~~g~tvi~i----sHdl~~v~~~~d 532 (623)
T PRK10261 506 LLDLQRDFGIAYLFI----SHDMAVVERISH 532 (623)
T ss_pred HHHHHHhcCCEEEEE----eCCHHHHHHhCC
Confidence 9998764 7888766 466665556555
No 205
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.88 E-value=9.3e-22 Score=170.47 Aligned_cols=142 Identities=20% Similarity=0.266 Sum_probs=102.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-------CcccChhhhHh----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS---------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-------~~~~~v~e~i~---------- 58 (247)
-+++|+||||||||||+++|+|++++ +|+|.++|.++.. ..++| .+..++++++.
T Consensus 23 ei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~ 101 (248)
T PRK03695 23 EILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPDKTRTE 101 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCccCCCcH
Confidence 47899999999999999999999865 8999999976521 12233 22345666543
Q ss_pred -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhc-----CCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDN-----YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 59 -----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~-----~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
+.++++.+++.+..... ...++.|++ ++||++++. -.+|+++|+|||++ ||+.++..+. +++++
T Consensus 102 ~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~-~~L~~ 178 (248)
T PRK03695 102 AVASALNEVAEALGLDDKLGRS--VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALD-RLLSE 178 (248)
T ss_pred HHHHHHHHHHHHcCCHhHhcCC--cccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHH-HHHHH
Confidence 45678888886543322 234666543 899999984 01469999999999 9999999988 88888
Q ss_pred HHhCCCeEEEEEecccccccchhHHhh
Q 025844 126 LKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 126 l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+++++.+++++ +|...+...+++
T Consensus 179 ~~~~~~tvi~~----sH~~~~~~~~~d 201 (248)
T PRK03695 179 LCQQGIAVVMS----SHDLNHTLRHAD 201 (248)
T ss_pred HHhCCCEEEEE----ecCHHHHHHhCC
Confidence 87667787666 455555555555
No 206
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=4.6e-22 Score=167.34 Aligned_cols=122 Identities=18% Similarity=0.212 Sum_probs=90.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc---CCCceEEEeccCCCC------CCCCC-------CcccChhhhHhHHHHHHHc
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELISLEDVMEEL 66 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~---~~~G~v~i~g~d~~~------~~~~y-------~~~~~v~e~i~~~~~l~~~ 66 (247)
-+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..+.| .+..++++++.....+.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-- 111 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK-- 111 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--
Confidence 4789999999999999999999999 899999999976532 12333 23457777765322111
Q ss_pred CCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025844 67 GLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (247)
Q Consensus 67 ~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v 136 (247)
. ... ...++.+. ++.||++++. +|+++|+|||++ ||+.+++.+. ++++++.++ +.+++++
T Consensus 112 -~----~~~--~~~LS~Ge~qrl~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~~~~~t~ii~ 175 (202)
T cd03233 112 -G----NEF--VRGISGGERKRVSIAEALVS--RASVLCWDNSTRGLDSSTALEIL-KCIRTMADVLKTTTFVS 175 (202)
T ss_pred -c----ccc--hhhCCHHHHHHHHHHHHHhh--CCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhCCCEEEEE
Confidence 1 111 23455554 3899999999 999999999999 9999999998 888888654 5555443
No 207
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=5.2e-22 Score=172.81 Aligned_cols=142 Identities=20% Similarity=0.287 Sum_probs=100.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCCC---------CCCCC-------CcccChhhhHh---
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-------PVAMDIRELIS--- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~~---------~~~~y-------~~~~~v~e~i~--- 58 (247)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..++| .+..++++++.
T Consensus 31 e~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~ 110 (258)
T PRK14241 31 SVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGL 110 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHH
Confidence 46899999999999999999999974 69999999876421 12333 22356766653
Q ss_pred --------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHH
Q 025844 59 --------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (247)
Q Consensus 59 --------------~~~~l~~~~L~~~--~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~ 119 (247)
++++++.+++.+. .........+++|++ +.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~ 188 (258)
T PRK14241 111 KLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAV--EPDVLLMDEPCSALDPISTLAIE 188 (258)
T ss_pred HhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH
Confidence 2345666776421 011111234666543 899999999 999999999999 9999999998
Q ss_pred HHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 120 RNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 120 ~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++++++ +.+++++ +|...+...+++
T Consensus 189 -~~l~~~~~-~~tviiv----sH~~~~~~~~~d 215 (258)
T PRK14241 189 -DLINELKQ-DYTIVIV----THNMQQAARVSD 215 (258)
T ss_pred -HHHHHHhc-CCEEEEE----ecCHHHHHHhCC
Confidence 88888854 5676555 455555555544
No 208
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.88 E-value=1.9e-22 Score=171.33 Aligned_cols=130 Identities=21% Similarity=0.182 Sum_probs=94.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh----------H
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------~ 59 (247)
-+++|+||||||||||+++|+|+.+|++|+|.++|.+... ..+.| ++ ..++.+++. +
T Consensus 31 ~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~ 110 (220)
T cd03245 31 EKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERI 110 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHHhhcCCCCCCHHHH
Confidence 3689999999999999999999999999999999865421 12222 11 236666653 3
Q ss_pred HHHHHHcCCCCCCchhh---------hHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844 60 EDVMEELGLGPNGGLIY---------CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (247)
Q Consensus 60 ~~~l~~~~L~~~~~~~~---------~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (247)
.++++.+++.+...... ....+++|+ ++.||++++. +|+++|+||||+ ||+.++..+. +++++++
T Consensus 111 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~ 187 (220)
T cd03245 111 LRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLN--DPPILLLDEPTSAMDMNSEERLK-ERLRQLL 187 (220)
T ss_pred HHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHhc
Confidence 45666667643211110 012456554 3899999999 999999999999 9999999998 8888886
Q ss_pred hCCCeEEEE
Q 025844 128 SRNFNVCAV 136 (247)
Q Consensus 128 ~~~~~ii~v 136 (247)
+. .+++++
T Consensus 188 ~~-~tii~~ 195 (220)
T cd03245 188 GD-KTLIII 195 (220)
T ss_pred CC-CEEEEE
Confidence 53 666555
No 209
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.88 E-value=2.7e-22 Score=175.76 Aligned_cols=141 Identities=16% Similarity=0.202 Sum_probs=103.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCC---------CcccChhhhH------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY---------PVAMDIRELI------ 57 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y---------~~~~~v~e~i------ 57 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++.+++
T Consensus 39 e~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~ 118 (268)
T PRK10419 39 ETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRH 118 (268)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHh
Confidence 4789999999999999999999999999999999875421 12222 2334555543
Q ss_pred -----------hHHHHHHHcCCCC-CCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 025844 58 -----------SLEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (247)
Q Consensus 58 -----------~~~~~l~~~~L~~-~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (247)
.++++++.+++.+ ..... ...+++|+ ++.||++++. +|+++|+|||++ ||+.++..+. ++
T Consensus 119 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--~~~LS~Ge~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~~~-~~ 193 (268)
T PRK10419 119 LLSLDKAERLARASEMLRAVDLDDSVLDKR--PPQLSGGQLQRVCLARALAV--EPKLLILDEAVSNLDLVLQAGVI-RL 193 (268)
T ss_pred hccCCHHHHHHHHHHHHHHcCCChhHhhCC--CccCChHHHHHHHHHHHHhc--CCCEEEEeCCCcccCHHHHHHHH-HH
Confidence 1566788888863 22222 23455554 3899999999 999999999999 9999999988 88
Q ss_pred HHHHHhC-CCeEEEEEecccccccchhHHhh
Q 025844 123 VDHLKSR-NFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 123 l~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+++++++ +.+++++ +|...+...+++
T Consensus 194 l~~~~~~~~~tiiiv----sH~~~~i~~~~d 220 (268)
T PRK10419 194 LKKLQQQFGTACLFI----THDLRLVERFCQ 220 (268)
T ss_pred HHHHHHHcCcEEEEE----ECCHHHHHHhCC
Confidence 8888654 7777666 455555555555
No 210
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.87 E-value=8.7e-22 Score=171.67 Aligned_cols=142 Identities=18% Similarity=0.220 Sum_probs=99.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeccCCC---------CCCCCC-Cc-----ccChhhhHh----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS---- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~g~d~~---------~~~~~y-~~-----~~~v~e~i~---- 58 (247)
-+++|+||||||||||+++|+|+++ |++|+|.++|.++. .+.+.| ++ ..++++++.
T Consensus 40 e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~ 119 (260)
T PRK10744 40 QVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVR 119 (260)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCcCcHHHHHhhhHh
Confidence 4689999999999999999999986 58999999987642 112333 11 146665543
Q ss_pred -------------HHHHHHHcCCCCCC-c-hhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844 59 -------------LEDVMEELGLGPNG-G-LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (247)
Q Consensus 59 -------------~~~~l~~~~L~~~~-~-~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (247)
+.++++.+++.+.. . .......+++|+ ++.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 120 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~- 196 (260)
T PRK10744 120 LFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAI--RPEVLLLDEPCSALDPISTGRIE- 196 (260)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHC--CCCEEEEcCCCccCCHHHHHHHH-
Confidence 34566777764310 0 011123455554 3899999999 999999999999 9999999988
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++++++ +.+++++ +|...+...+++
T Consensus 197 ~~L~~~~~-~~tiii~----sH~~~~~~~~~d 223 (260)
T PRK10744 197 ELITELKQ-DYTVVIV----THNMQQAARCSD 223 (260)
T ss_pred HHHHHHhc-CCeEEEE----eCCHHHHHHhCC
Confidence 88888854 6666555 455554444444
No 211
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.87 E-value=3.8e-22 Score=188.84 Aligned_cols=142 Identities=14% Similarity=0.202 Sum_probs=105.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC-CCceEEEeccCCCC--------CCCCC----------CcccChhhhH------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAA--------ENFDY----------PVAMDIRELI------ 57 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-~~G~v~i~g~d~~~--------~~~~y----------~~~~~v~e~i------ 57 (247)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..++| .+.+++++++
T Consensus 287 e~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~ 366 (500)
T TIGR02633 287 EILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLK 366 (500)
T ss_pred cEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhh
Confidence 47899999999999999999999995 89999999865421 12222 2223443332
Q ss_pred ---------------hHHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 025844 58 ---------------SLEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (247)
Q Consensus 58 ---------------~~~~~l~~~~L~~-~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (247)
.++++++++++.. ..... ...+++|++ ++||++++. +|++|||||||+ ||+.++..+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGqkqrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l 442 (500)
T TIGR02633 367 SFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP--IGRLSGGNQQKAVLAKMLLT--NPRVLILDEPTRGVDVGAKYEI 442 (500)
T ss_pred hhccCCcCCHHHHHHHHHHHHHhcCccCCCccCc--cccCCHHHHHHHHHHHHHhh--CCCEEEEcCCCCCcCHhHHHHH
Confidence 1456788888853 22222 245676654 899999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEecccccccchhHHhhh
Q 025844 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG 153 (247)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~ 153 (247)
+ ++++.++++|.+++++ +|.+.....+++.
T Consensus 443 ~-~~l~~l~~~g~tviiv----sHd~~~~~~~~d~ 472 (500)
T TIGR02633 443 Y-KLINQLAQEGVAIIVV----SSELAEVLGLSDR 472 (500)
T ss_pred H-HHHHHHHhCCCEEEEE----CCCHHHHHHhCCE
Confidence 8 8999987778887666 5666666666653
No 212
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.87 E-value=1.4e-22 Score=174.00 Aligned_cols=130 Identities=16% Similarity=0.132 Sum_probs=90.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh----------H
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------~ 59 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| ++ ..++.+++. +
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~ 108 (237)
T cd03252 29 EVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERV 108 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHHhhccCCCCCHHHH
Confidence 3689999999999999999999999999999999976421 12333 11 246666653 1
Q ss_pred HHHHHHcCCCC---------CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844 60 EDVMEELGLGP---------NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (247)
Q Consensus 60 ~~~l~~~~L~~---------~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (247)
.+.++..++.. ..........+++|++ ++||++++. +|+++|+||||+ ||+.++..+. +++++++
T Consensus 109 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~ 185 (237)
T cd03252 109 IEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIH--NPRILIFDEATSALDYESEHAIM-RNMHDIC 185 (237)
T ss_pred HHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHhc
Confidence 12222222211 0000011234666543 899999999 999999999999 9999999998 8888885
Q ss_pred hCCCeEEEE
Q 025844 128 SRNFNVCAV 136 (247)
Q Consensus 128 ~~~~~ii~v 136 (247)
+ |.+++++
T Consensus 186 ~-~~tiii~ 193 (237)
T cd03252 186 A-GRTVIII 193 (237)
T ss_pred C-CCEEEEE
Confidence 4 7777655
No 213
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=8.7e-22 Score=168.20 Aligned_cols=130 Identities=18% Similarity=0.152 Sum_probs=90.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh----------H
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------~ 59 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| ++ ..++.+++. +
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~ 109 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEV 109 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHHHhccCCCCCHHHH
Confidence 3689999999999999999999999999999999865421 22333 11 125555543 2
Q ss_pred HHHHHHcCCCCCCc---------hhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844 60 EDVMEELGLGPNGG---------LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (247)
Q Consensus 60 ~~~l~~~~L~~~~~---------~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (247)
.+.++.+++..... .......++.|+ ++.||++++. +|+++|+|||++ ||+.++..++ +++++++
T Consensus 110 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~ 186 (229)
T cd03254 110 IEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLR--DPKILILDEATSNIDTETEKLIQ-EALEKLM 186 (229)
T ss_pred HHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHhc
Confidence 23333333321100 000013455554 3899999999 999999999999 9999999988 8888885
Q ss_pred hCCCeEEEE
Q 025844 128 SRNFNVCAV 136 (247)
Q Consensus 128 ~~~~~ii~v 136 (247)
++.+++++
T Consensus 187 -~~~tii~~ 194 (229)
T cd03254 187 -KGRTSIII 194 (229)
T ss_pred -CCCEEEEE
Confidence 47777665
No 214
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=6.3e-22 Score=162.96 Aligned_cols=129 Identities=16% Similarity=0.221 Sum_probs=105.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC---C------CCCCCCcccChhhhHh----------------
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---A------ENFDYPVAMDIRELIS---------------- 58 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~---~------~~~~y~~~~~v~e~i~---------------- 58 (247)
.++++||+|||||||+++++|+..|+.|+|.++|..+. . |+-+..|.+++.||+.
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~ 112 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREI 112 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHH
Confidence 57899999999999999999999999999999997542 1 4445567788999886
Q ss_pred HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEE
Q 025844 59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (247)
Q Consensus 59 ~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~ 135 (247)
+.+.+..+||........ -.++++++ +.||||++. +|++|++|||.. ||..+++.+..-++.-++..|+.+++
T Consensus 113 a~q~l~~VgL~~~~~~~i--~qLSGGmrQRvGiARALa~--eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~ll 188 (259)
T COG4525 113 AHQMLALVGLEGAEHKYI--WQLSGGMRQRVGIARALAV--EPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLL 188 (259)
T ss_pred HHHHHHHhCcccccccce--EeecchHHHHHHHHHHhhc--CcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 678899999998764443 24677765 899999999 999999999998 99999999884555566667888876
Q ss_pred E
Q 025844 136 V 136 (247)
Q Consensus 136 v 136 (247)
|
T Consensus 189 i 189 (259)
T COG4525 189 I 189 (259)
T ss_pred E
Confidence 6
No 215
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.87 E-value=5.1e-22 Score=161.74 Aligned_cols=121 Identities=15% Similarity=0.180 Sum_probs=87.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~ 82 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+..... ..+ ..-...++-+ .++
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~--------~~~-----~~~~~i~~~~---------qLS 84 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFAS--------PRD-----ARRAGIAMVY---------QLS 84 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCC--------HHH-----HHhcCeEEEE---------ecC
Confidence 478999999999999999999999999999999987653210 000 0000111100 034
Q ss_pred hh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 83 DN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 83 ~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
.+ +++.+|++++. +|+++|+|||++ ||+.+++.+. ++++++++++.+++++ +|...+...+++
T Consensus 85 ~G~~qrl~laral~~--~p~illlDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~----sh~~~~~~~~~d 150 (163)
T cd03216 85 VGERQMVEIARALAR--NARLLILDEPTAALTPAEVERLF-KVIRRLRAQGVAVIFI----SHRLDEVFEIAD 150 (163)
T ss_pred HHHHHHHHHHHHHhc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEE----eCCHHHHHHhCC
Confidence 43 34899999999 999999999999 9999999998 8898887667777665 355444444443
No 216
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.87 E-value=1.7e-21 Score=184.47 Aligned_cols=145 Identities=16% Similarity=0.150 Sum_probs=105.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC--CCceEEEeccCCCC--------CCCCC-------CcccChhhhHh-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~--~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~------- 58 (247)
-+++|+||||||||||+++|+|+++| ++|+|.++|.+... ..++| .+.+++.+++.
T Consensus 28 e~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 107 (500)
T TIGR02633 28 ECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITL 107 (500)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccc
Confidence 47899999999999999999999987 79999999865421 22333 12345544432
Q ss_pred -------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 025844 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (247)
Q Consensus 59 -------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (247)
++++++.+++....... ....+++|++ ++||++++. +|+++||||||+ ||+.++..+. ++
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LSgG~~qrv~iA~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~ 183 (500)
T TIGR02633 108 PGGRMAYNAMYLRAKNLLRELQLDADNVTR-PVGDYGGGQQQLVEIAKALNK--QARLLILDEPSSSLTEKETEILL-DI 183 (500)
T ss_pred cccccCHHHHHHHHHHHHHHcCCCCCcccC-chhhCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHH-HH
Confidence 45677888886532111 1345777654 899999999 999999999999 9999999998 88
Q ss_pred HHHHHhCCCeEEEEEecccccccchhHHhhhhH
Q 025844 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (247)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l 155 (247)
++++++.|.+++++ +|.......+++.++
T Consensus 184 l~~l~~~g~tviii----tHd~~~~~~~~d~i~ 212 (500)
T TIGR02633 184 IRDLKAHGVACVYI----SHKLNEVKAVCDTIC 212 (500)
T ss_pred HHHHHhCCCEEEEE----eCcHHHHHHhCCEEE
Confidence 99987778887666 355444445555433
No 217
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.87 E-value=1.1e-21 Score=158.44 Aligned_cols=129 Identities=19% Similarity=0.224 Sum_probs=103.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------CCCC-------CCcccChhhhHh-------
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFD-------YPVAMDIRELIS------- 58 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------~~~~-------y~~~~~v~e~i~------- 58 (247)
.++|+||+|||||||+-.++|+-.|++|+|++.|.+... .+++ ..|+++-.||+.
T Consensus 38 ~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~g 117 (228)
T COG4181 38 TVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRG 117 (228)
T ss_pred eEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcC
Confidence 589999999999999999999999999999999976532 2333 345777777774
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhh--hHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844 59 ---------LEDVMEELGLGPNGGLIYCMEHLED--NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (247)
Q Consensus 59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~--~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (247)
..++++.+||+....-.+. .+++ +++++||||++. .|++|+.||||- ||-.+-.++. +++-.+
T Consensus 118 e~~~~~~~~A~~lL~~vGLg~Rl~HyP~--qLSGGEQQRVAiARAfa~--~P~vLfADEPTGNLD~~Tg~~ia-DLlF~l 192 (228)
T COG4181 118 ESSADSRAGAKALLEAVGLGKRLTHYPA--QLSGGEQQRVALARAFAG--RPDVLFADEPTGNLDRATGDKIA-DLLFAL 192 (228)
T ss_pred CccccHHHHHHHHHHHhCcccccccCcc--ccCchHHHHHHHHHHhcC--CCCEEeccCCCCCcchhHHHHHH-HHHHHH
Confidence 6789999999875433322 3443 456999999999 999999999997 9999999999 888787
Q ss_pred Hh-CCCeEEEEE
Q 025844 127 KS-RNFNVCAVY 137 (247)
Q Consensus 127 ~~-~~~~ii~v~ 137 (247)
++ .|.|.++|.
T Consensus 193 nre~G~TlVlVT 204 (228)
T COG4181 193 NRERGTTLVLVT 204 (228)
T ss_pred hhhcCceEEEEe
Confidence 65 588887774
No 218
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=9.6e-22 Score=164.10 Aligned_cols=116 Identities=16% Similarity=0.237 Sum_probs=89.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC--cCCCceEEEeccCCC---CCCCCC-------CcccChhhhHhHHHHHHHcCCCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPA---AENFDY-------PVAMDIRELISLEDVMEELGLGP 70 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l--~~~~G~v~i~g~d~~---~~~~~y-------~~~~~v~e~i~~~~~l~~~~L~~ 70 (247)
-+++|+||||||||||+++|+|+. +|++|+|.++|.++. ...+.| .+..++++++.....++
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------ 107 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLR------ 107 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHh------
Confidence 368999999999999999999986 489999999987642 112222 33457777776432211
Q ss_pred CCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 71 NGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 71 ~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
.++++ +++.||++++. +|+++|+|||++ ||+.++..+. ++++++++.+.+++++
T Consensus 108 ---------~LSgGe~qrv~la~al~~--~p~vlllDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiiiv 164 (192)
T cd03232 108 ---------GLSVEQRKRLTIGVELAA--KPSILFLDEPTSGLDSQAAYNIV-RFLKKLADSGQAILCT 164 (192)
T ss_pred ---------cCCHHHhHHHHHHHHHhc--CCcEEEEeCCCcCCCHHHHHHHH-HHHHHHHHcCCEEEEE
Confidence 24444 34899999999 999999999999 9999999998 8888887667787666
No 219
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.6e-21 Score=168.58 Aligned_cols=142 Identities=20% Similarity=0.247 Sum_probs=100.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc---CCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh--------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~---~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~-------- 58 (247)
-+++|+||||||||||+++|+|+++ |++|+|.++|.+... ..+.| ++ ..++++++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~ 108 (246)
T PRK14269 29 KITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGM 108 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccHHHHhhhHHhhcCc
Confidence 4689999999999999999999974 689999999976531 12333 11 136666652
Q ss_pred ----------HHHHHHHcCCCCCCc--hhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 025844 59 ----------LEDVMEELGLGPNGG--LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (247)
Q Consensus 59 ----------~~~~l~~~~L~~~~~--~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (247)
+.++++.+++.+... .......+++|++ +++|++++. +|+++|+|||++ ||+.++..+. +++
T Consensus 109 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEP~~~LD~~~~~~l~-~~l 185 (246)
T PRK14269 109 IKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAI--KPKLLLLDEPTSALDPISSGVIE-ELL 185 (246)
T ss_pred ccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHH
Confidence 345677888853110 0011234555543 899999999 999999999999 9999999888 888
Q ss_pred HHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 124 DHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 124 ~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+++.+ +.+++++ +|...+...+++
T Consensus 186 ~~~~~-~~tiii~----tH~~~~~~~~~d 209 (246)
T PRK14269 186 KELSH-NLSMIMV----THNMQQGKRVAD 209 (246)
T ss_pred HHHhC-CCEEEEE----ecCHHHHHhhCc
Confidence 88754 7777655 355554445444
No 220
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.87 E-value=4.6e-22 Score=172.31 Aligned_cols=130 Identities=12% Similarity=0.163 Sum_probs=94.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC--CcCCCceEEEeccCCCC------C--CCCC-------CcccChhhhHh-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA------E--NFDY-------PVAMDIRELIS------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~--l~~~~G~v~i~g~d~~~------~--~~~y-------~~~~~v~e~i~------- 58 (247)
-+++|+||||||||||+++|+|+ ++|++|+|+++|.+... . .+.| .+..++.+++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~ 113 (252)
T CHL00131 34 EIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKR 113 (252)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhh
Confidence 47899999999999999999998 57999999999865421 1 1112 11223333321
Q ss_pred ----------------HHHHHHHcCCCC-CCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 025844 59 ----------------LEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (247)
Q Consensus 59 ----------------~~~~l~~~~L~~-~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (247)
+.++++.+++.+ ...... .+.+++|+ ++.||++++. +|+++|+||||+ ||+.++..+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l 190 (252)
T CHL00131 114 KFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNV-NEGFSGGEKKRNEILQMALL--DSELAILDETDSGLDIDALKII 190 (252)
T ss_pred cccccccccHHHHHHHHHHHHHHcCCchhhhcccc-ccCCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHH
Confidence 345677788863 222211 11256554 3899999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 025844 119 LRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v 136 (247)
. ++++++.++|.+++++
T Consensus 191 ~-~~l~~~~~~g~tii~~ 207 (252)
T CHL00131 191 A-EGINKLMTSENSIILI 207 (252)
T ss_pred H-HHHHHHHhCCCEEEEE
Confidence 8 8888887667787666
No 221
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.87 E-value=1.1e-21 Score=168.63 Aligned_cols=128 Identities=17% Similarity=0.179 Sum_probs=90.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh----------H
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------~ 59 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| ++ ..++++++. +
T Consensus 30 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~ 109 (238)
T cd03249 30 KTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEV 109 (238)
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHHhhccCCCCCHHHH
Confidence 4789999999999999999999999999999999966421 22333 11 236666653 1
Q ss_pred HHHHHHcCC-----------CCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 60 EDVMEELGL-----------GPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 60 ~~~l~~~~L-----------~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
.+.++..++ ....... ...+++|++ +.||++++. +|+++|+|||++ ||+.++..+. ++++.
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEP~~gLD~~~~~~l~-~~l~~ 184 (238)
T cd03249 110 EEAAKKANIHDFIMSLPDGYDTLVGER--GSQLSGGQKQRIAIARALLR--NPKILLLDEATSALDAESEKLVQ-EALDR 184 (238)
T ss_pred HHHHHHcChHHHHHhhccccceeeccC--CccCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHH
Confidence 122222222 1111111 134555543 899999999 999999999999 9999999988 88888
Q ss_pred HHhCCCeEEEE
Q 025844 126 LKSRNFNVCAV 136 (247)
Q Consensus 126 l~~~~~~ii~v 136 (247)
++ +|.+++++
T Consensus 185 ~~-~g~~vi~~ 194 (238)
T cd03249 185 AM-KGRTTIVI 194 (238)
T ss_pred hc-CCCEEEEE
Confidence 86 67777655
No 222
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.87 E-value=4.3e-22 Score=164.39 Aligned_cols=110 Identities=16% Similarity=0.207 Sum_probs=84.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCC-CcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-PVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y-~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l 81 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+ +.| ++... +
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----i~~~~q~~~----------------------------L 72 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-----PVYKPQYID----------------------------L 72 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-----EEEEcccCC----------------------------C
Confidence 4789999999999999999999999999999998854 223 11110 3
Q ss_pred hhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC-CeEEEEEecccccccchhHHhh
Q 025844 82 EDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN-FNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 82 ~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~-~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+.+ +++.+|++++. +|+++++|||++ ||+.++..+. ++++++++++ .+++++ +|.......+++
T Consensus 73 SgGq~qrv~laral~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~~~~~~~~tiiiv----sH~~~~~~~~~d 140 (177)
T cd03222 73 SGGELQRVAIAAALLR--NATFYLFDEPSAYLDIEQRLNAA-RAIRRLSEEGKKTALVV----EHDLAVLDYLSD 140 (177)
T ss_pred CHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHHHcCCCEEEEE----ECCHHHHHHhCC
Confidence 333 44999999999 999999999999 9999999988 8888876654 777655 355544444433
No 223
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.2e-21 Score=171.44 Aligned_cols=142 Identities=20% Similarity=0.275 Sum_probs=99.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHh----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~---- 58 (247)
-+++|+||||||||||+++|+|+++| ++|+|+++|.++.. ..++| ++ ..++.+++.
T Consensus 46 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 125 (267)
T PRK14235 46 TVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPR 125 (267)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCCcHHHHHHHHHH
Confidence 46899999999999999999999975 89999999976421 12333 11 126666553
Q ss_pred --------------HHHHHHHcCCCCCC--chhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHH
Q 025844 59 --------------LEDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (247)
Q Consensus 59 --------------~~~~l~~~~L~~~~--~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~ 119 (247)
+.++++.+++.... ........+++|+ ++.||++++. +|+++|+|||++ ||+.++..+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~ 203 (267)
T PRK14235 126 IHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAV--SPEVILMDEPCSALDPIATAKVE 203 (267)
T ss_pred hcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcCCCHHHHHHHH
Confidence 24466677774310 0111123455554 3899999999 999999999999 9999999998
Q ss_pred HHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 120 RNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 120 ~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++++++ +.+++++ +|.......+++
T Consensus 204 -~~L~~l~~-~~tiiiv----tH~~~~~~~~~d 230 (267)
T PRK14235 204 -ELIDELRQ-NYTIVIV----THSMQQAARVSQ 230 (267)
T ss_pred -HHHHHHhc-CCeEEEE----EcCHHHHHhhCC
Confidence 88888855 6677555 355544444444
No 224
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.7e-21 Score=168.72 Aligned_cols=142 Identities=18% Similarity=0.256 Sum_probs=99.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC---CcC--CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHh----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH---CET--VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~---l~~--~~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~---- 58 (247)
-+++|+||||||||||+++|+|+ ++| ++|+|.++|.+... ..++| ++ ..++.+++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~ 109 (250)
T PRK14245 30 SVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLR 109 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCcccHHHHHHHHHH
Confidence 46899999999999999999997 454 58999999976421 12333 11 135655553
Q ss_pred -------------HHHHHHHcCCCCCC--chhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844 59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (247)
Q Consensus 59 -------------~~~~l~~~~L~~~~--~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (247)
++++++.+++.+.. ........+++|++ +.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~- 186 (250)
T PRK14245 110 VNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAV--SPSVLLMDEPASALDPISTAKVE- 186 (250)
T ss_pred HcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence 34566777775311 11111245666643 899999999 999999999999 9999999988
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+++++++ ++.+++++ +|...+...+++
T Consensus 187 ~~l~~~~-~~~tiiiv----tH~~~~~~~~~d 213 (250)
T PRK14245 187 ELIHELK-KDYTIVIV----THNMQQAARVSD 213 (250)
T ss_pred HHHHHHh-cCCeEEEE----eCCHHHHHhhCC
Confidence 8888885 46777655 455554444444
No 225
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.87 E-value=3.4e-22 Score=190.09 Aligned_cols=143 Identities=14% Similarity=0.113 Sum_probs=105.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe-ccC---CC----------CCCCCC-------CcccChhhhHh---
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV-NLD---PA----------AENFDY-------PVAMDIRELIS--- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~-g~d---~~----------~~~~~y-------~~~~~v~e~i~--- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.+. |.+ +. ...++| .+.+++.+++.
T Consensus 311 e~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~ 390 (520)
T TIGR03269 311 EIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAI 390 (520)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHH
Confidence 3689999999999999999999999999999995 521 10 112333 23457776663
Q ss_pred ------------HHHHHHHcCCCCCC---chhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844 59 ------------LEDVMEELGLGPNG---GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (247)
Q Consensus 59 ------------~~~~l~~~~L~~~~---~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (247)
+.++++.+++.... ........+++|++ ++||++++. +|++||+||||+ ||+.+++.++
T Consensus 391 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~--~p~lLllDEPt~~LD~~~~~~l~- 467 (520)
T TIGR03269 391 GLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIK--EPRIVILDEPTGTMDPITKVDVT- 467 (520)
T ss_pred HcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-
Confidence 34577888886420 11122356777654 899999999 999999999999 9999999999
Q ss_pred HHHHHHHh-CCCeEEEEEecccccccchhHHhh
Q 025844 121 NFVDHLKS-RNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 121 ~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++++++ .|.+++++ +|.......+++
T Consensus 468 ~~l~~l~~~~g~tvi~v----sHd~~~~~~~~d 496 (520)
T TIGR03269 468 HSILKAREEMEQTFIIV----SHDMDFVLDVCD 496 (520)
T ss_pred HHHHHHHHHcCcEEEEE----eCCHHHHHHhCC
Confidence 88888865 47888666 466655555555
No 226
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.87 E-value=8.9e-22 Score=171.44 Aligned_cols=140 Identities=18% Similarity=0.246 Sum_probs=100.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEE-----------EeccCCCC-------C--CCCC-Cc-----ccC----h
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-----------IVNLDPAA-------E--NFDY-PV-----AMD----I 53 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~-----------i~g~d~~~-------~--~~~y-~~-----~~~----v 53 (247)
+++|+||||||||||+++|+|+++|++|+|+ ++|.+... . .+.| ++ ..+ +
T Consensus 28 ~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i 107 (255)
T cd03236 28 VLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKV 107 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCchHHHHHH
Confidence 6899999999999999999999999999996 56655421 0 1111 11 011 2
Q ss_pred hhhH-------hHHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 025844 54 RELI-------SLEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (247)
Q Consensus 54 ~e~i-------~~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (247)
.+++ .+.++++.+++.+..... ...++.++ ++.+|++++. +|+++|+||||+ ||+.++..+. +++
T Consensus 108 ~~~l~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~laral~~--~p~illlDEPts~LD~~~~~~l~-~~l 182 (255)
T cd03236 108 GELLKKKDERGKLDELVDQLELRHVLDRN--IDQLSGGELQRVAIAAALAR--DADFYFFDEPSSYLDIKQRLNAA-RLI 182 (255)
T ss_pred HHHhchhHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEECCCCCCCHHHHHHHH-HHH
Confidence 2221 267889999987643322 23455554 3899999999 999999999999 9999999998 889
Q ss_pred HHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 124 DHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 124 ~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+++++++.+++++ +|.......+++
T Consensus 183 ~~l~~~~~tIIii----SHd~~~~~~~ad 207 (255)
T cd03236 183 RELAEDDNYVLVV----EHDLAVLDYLSD 207 (255)
T ss_pred HHHHhcCCEEEEE----ECCHHHHHHhCC
Confidence 9987667777666 355444444444
No 227
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1.8e-21 Score=166.95 Aligned_cols=130 Identities=16% Similarity=0.168 Sum_probs=90.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-C-----cccChhhhHh----------H
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS----------L 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~-----~~~~v~e~i~----------~ 59 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| + ...++++++. +
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~ 107 (236)
T cd03253 28 KKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEV 107 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHHHhhcCCCCCHHHH
Confidence 3689999999999999999999999999999999865421 11222 1 1246666653 1
Q ss_pred HHHHHHcCCCCC------C---chhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844 60 EDVMEELGLGPN------G---GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (247)
Q Consensus 60 ~~~l~~~~L~~~------~---~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (247)
.+.++..++... + ........++.|+ +++||++++. +|+++|+|||++ ||+.++..+. +++.+++
T Consensus 108 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~ 184 (236)
T cd03253 108 IEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILK--NPPILLLDEATSALDTHTEREIQ-AALRDVS 184 (236)
T ss_pred HHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHhc
Confidence 222233232110 0 0000112455554 3899999999 999999999999 9999999988 8888886
Q ss_pred hCCCeEEEE
Q 025844 128 SRNFNVCAV 136 (247)
Q Consensus 128 ~~~~~ii~v 136 (247)
+ |.+++++
T Consensus 185 ~-~~tiii~ 192 (236)
T cd03253 185 K-GRTTIVI 192 (236)
T ss_pred C-CCEEEEE
Confidence 6 7777665
No 228
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=6.9e-22 Score=171.41 Aligned_cols=142 Identities=18% Similarity=0.282 Sum_probs=99.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc--C---CCceEEEeccCCCC---------CCCCC-------CcccChhhhHh---
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE--T---VRRTMHIVNLDPAA---------ENFDY-------PVAMDIRELIS--- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~--~---~~G~v~i~g~d~~~---------~~~~y-------~~~~~v~e~i~--- 58 (247)
-+++|+||||||||||+++|+|+++ | ++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 110 (252)
T PRK14256 31 SVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGY 110 (252)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHH
Confidence 3689999999999999999999986 3 68999999976521 11222 22356666553
Q ss_pred --------------HHHHHHHcCCCCCC--chhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHH
Q 025844 59 --------------LEDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (247)
Q Consensus 59 --------------~~~~l~~~~L~~~~--~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~ 119 (247)
+.+.++.+++.... ........+++|+ +++||++++. +|+++|+|||++ ||+.++..+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~--~p~llllDEP~~gLD~~~~~~l~ 188 (252)
T PRK14256 111 KLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAV--KPEVILMDEPASALDPISTLKIE 188 (252)
T ss_pred HhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH
Confidence 34455667764310 0001123455554 3899999999 999999999999 9999999998
Q ss_pred HHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 120 RNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 120 ~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++++++ +.+++++ +|...+...+++
T Consensus 189 -~~l~~~~~-~~tiiiv----sH~~~~~~~~~d 215 (252)
T PRK14256 189 -ELIEELKE-KYTIIIV----THNMQQAARVSD 215 (252)
T ss_pred -HHHHHHHh-CCcEEEE----ECCHHHHHhhCC
Confidence 88888865 5666555 465555555555
No 229
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.87 E-value=6.9e-22 Score=188.38 Aligned_cols=131 Identities=15% Similarity=0.225 Sum_probs=97.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCCC-----------CCCCC-Cc--------ccChhhhH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA-----------ENFDY-PV--------AMDIRELI 57 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~~-----------~~~~y-~~--------~~~v~e~i 57 (247)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..++| +| ..++.+++
T Consensus 36 e~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~ 115 (529)
T PRK15134 36 ETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQL 115 (529)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHH
Confidence 36899999999999999999999986 79999999876421 12343 22 12333332
Q ss_pred -----------------hHHHHHHHcCCCCCC-chhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHH
Q 025844 58 -----------------SLEDVMEELGLGPNG-GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHV 116 (247)
Q Consensus 58 -----------------~~~~~l~~~~L~~~~-~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~ 116 (247)
.++++++.+++.... ........+++|++ ++||++++. +|++||+||||+ ||+.++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~--~p~llllDEPt~~LD~~~~~ 193 (529)
T PRK15134 116 YEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLT--RPELLIADEPTTALDVSVQA 193 (529)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhc--CCCEEEEcCCCCccCHHHHH
Confidence 145678888886421 11112345776654 999999999 999999999999 9999999
Q ss_pred HHHHHHHHHHHhC-CCeEEEE
Q 025844 117 PVLRNFVDHLKSR-NFNVCAV 136 (247)
Q Consensus 117 ~~~~~ll~~l~~~-~~~ii~v 136 (247)
.+. +++++++++ |.++++|
T Consensus 194 ~l~-~~l~~l~~~~g~tvi~v 213 (529)
T PRK15134 194 QIL-QLLRELQQELNMGLLFI 213 (529)
T ss_pred HHH-HHHHHHHHhcCCeEEEE
Confidence 999 899998764 7887766
No 230
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.87 E-value=3e-21 Score=163.73 Aligned_cols=139 Identities=10% Similarity=-0.085 Sum_probs=95.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEE-EeccCCCC-CCCCCCcccChhhhHhH------------H-HHHHHcC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-IVNLDPAA-ENFDYPVAMDIRELISL------------E-DVMEELG 67 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~-i~g~d~~~-~~~~y~~~~~v~e~i~~------------~-~~l~~~~ 67 (247)
-+++|+||||||||||+++|+|+++|++|+|. +.|..... +...+++.+++++++.. . .+.+..+
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~ 93 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGDEFSHFCYQLTQ 93 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHHHHHHHHHHHhC
Confidence 47899999999999999999999999999997 66643211 12223566788887752 1 1223344
Q ss_pred CCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH-HHHHhCCCeEEEEEeccccc
Q 025844 68 LGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV-DHLKSRNFNVCAVYLLDSQF 143 (247)
Q Consensus 68 L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll-~~l~~~~~~ii~v~l~d~~~ 143 (247)
+....... ...++.+++ +++|++++. +|+++|+|||++ +|+.++..+. +.+ +.++ +.+++++ +|.
T Consensus 94 l~~~~~~~--~~~lS~G~~qrv~la~al~~--~p~llllDEP~~~lD~~~~~~~~-~~l~~~~~--~~~ii~v----sH~ 162 (213)
T PRK15177 94 LEQCYTDR--VSEYSVTMKTHLAFAINLLL--PCRLYIADGKLYTGDNATQLRMQ-AALACQLQ--QKGLIVL----THN 162 (213)
T ss_pred hhHHhhch--HhhcCHHHHHHHHHHHHHhc--CCCEEEECCCCccCCHHHHHHHH-HHHHHHhh--CCcEEEE----ECC
Confidence 54322222 345565543 889999999 999999999988 9999998888 544 4443 3455444 466
Q ss_pred ccchhHHhh
Q 025844 144 ITDVTKFIS 152 (247)
Q Consensus 144 ~~d~~~~~s 152 (247)
+.....+++
T Consensus 163 ~~~~~~~~d 171 (213)
T PRK15177 163 PRLIKEHCH 171 (213)
T ss_pred HHHHHHhcC
Confidence 655555554
No 231
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.87 E-value=2.9e-22 Score=211.21 Aligned_cols=147 Identities=14% Similarity=0.098 Sum_probs=116.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC-------CcccChhhhHh-----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y-------~~~~~v~e~i~----------- 58 (247)
-+++|+||||||||||+|+|+|+++|++|+|+++|.++.. +.++| .+.++++|++.
T Consensus 1966 Ei~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~ 2045 (2272)
T TIGR01257 1966 ECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAE 2045 (2272)
T ss_pred cEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHH
Confidence 4789999999999999999999999999999999987631 23444 23578888764
Q ss_pred -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 025844 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (247)
Q Consensus 59 -----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (247)
++++++.++|....+.. ...+++|++ +.+|+|++. +|+++||||||+ ||+.+++.+. +++++++++|
T Consensus 2046 ~~~~~v~~lLe~lgL~~~~dk~--~~~LSGGqKqRLslA~ALi~--~P~VLLLDEPTsGLDp~sr~~l~-~lL~~l~~~g 2120 (2272)
T TIGR01257 2046 EIEKVANWSIQSLGLSLYADRL--AGTYSGGNKRKLSTAIALIG--CPPLVLLDEPTTGMDPQARRMLW-NTIVSIIREG 2120 (2272)
T ss_pred HHHHHHHHHHHHcCCHHHhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCC
Confidence 34567888887654433 345676654 899999999 999999999999 9999999998 9999987778
Q ss_pred CeEEEEEecccccccchhHHhhhhHHHh
Q 025844 131 FNVCAVYLLDSQFITDVTKFISGCMASL 158 (247)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s~~l~~~ 158 (247)
.+|+++ +|.+.+...+|+.+....
T Consensus 2121 ~TIILt----TH~mee~e~lcDrV~IL~ 2144 (2272)
T TIGR01257 2121 RAVVLT----SHSMEECEALCTRLAIMV 2144 (2272)
T ss_pred CEEEEE----eCCHHHHHHhCCEEEEEE
Confidence 887655 588888888887665543
No 232
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.6e-21 Score=189.18 Aligned_cols=149 Identities=15% Similarity=0.215 Sum_probs=110.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC---------------------CCCCCCC---------CcccC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---------------------AAENFDY---------PVAMD 52 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~---------------------~~~~~~y---------~~~~~ 52 (247)
-+++|+||||||||||+++|+|+++|++|+|.+.|.+. ....++| .+.++
T Consensus 43 e~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~t 122 (623)
T PRK10261 43 ETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFT 122 (623)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCC
Confidence 46899999999999999999999999999999876421 0112333 23457
Q ss_pred hhhhHh-----------------HHHHHHHcCCCCCC-chhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-cc
Q 025844 53 IRELIS-----------------LEDVMEELGLGPNG-GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IE 111 (247)
Q Consensus 53 v~e~i~-----------------~~~~l~~~~L~~~~-~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD 111 (247)
+.+++. +.++++.+|+.+.. ........+++|++ ++||++++. +|++||+||||+ ||
T Consensus 123 v~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~--~P~lLllDEPt~~LD 200 (623)
T PRK10261 123 VGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSC--RPAVLIADEPTTALD 200 (623)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhC--CCCEEEEeCCCCccC
Confidence 777653 34678888985311 11112346777654 999999999 999999999999 99
Q ss_pred HHhHHHHHHHHHHHHHhC-CCeEEEEEecccccccchhHHhhhhHHHh
Q 025844 112 LFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASL 158 (247)
Q Consensus 112 ~~~~~~~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s~~l~~~ 158 (247)
+.++..+. +++++++++ |.++++| +|.+.....+++.++...
T Consensus 201 ~~~~~~l~-~ll~~l~~~~g~tvi~i----tHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 201 VTIQAQIL-QLIKVLQKEMSMGVIFI----THDMGVVAEIADRVLVMY 243 (623)
T ss_pred HHHHHHHH-HHHHHHHHhcCCEEEEE----cCCHHHHHHhCCEEEEee
Confidence 99999999 999999754 8888666 577766667766554443
No 233
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.87 E-value=6.1e-22 Score=168.07 Aligned_cols=144 Identities=16% Similarity=0.157 Sum_probs=114.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC--CCCCCCCCcccChhhhHh----------------HHHHHHH
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AAENFDYPVAMDIRELIS----------------LEDVMEE 65 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~--~~~~~~y~~~~~v~e~i~----------------~~~~l~~ 65 (247)
.++|+|+||||||||+|+|+|.++|++|+|.+.|.-. -.-..++.|++|.+||+. ++++.+.
T Consensus 55 ~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~eIieF 134 (249)
T COG1134 55 RVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEF 134 (249)
T ss_pred EEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999998532 224456788899999985 6777778
Q ss_pred cCCCCCCchhhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccc
Q 025844 66 LGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI 144 (247)
Q Consensus 66 ~~L~~~~~~~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~ 144 (247)
-+|++..... +..++.++...||-+++...+|++||+||-.+ -|..-++... +.++++.+++.++++| +|.+
T Consensus 135 aELG~fi~~P--vktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~-~rl~e~~~~~~tiv~V----SHd~ 207 (249)
T COG1134 135 AELGDFIDQP--VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL-ERLNELVEKNKTIVLV----SHDL 207 (249)
T ss_pred HHHHHHhhCc--hhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHH-HHHHHHHHcCCEEEEE----ECCH
Confidence 8888876655 56688888766665555544999999999999 9999998888 7778876667777766 4666
Q ss_pred cchhHHhhhh
Q 025844 145 TDVTKFISGC 154 (247)
Q Consensus 145 ~d~~~~~s~~ 154 (247)
.-...+|+.+
T Consensus 208 ~~I~~~Cd~~ 217 (249)
T COG1134 208 GAIKQYCDRA 217 (249)
T ss_pred HHHHHhcCee
Confidence 6666777643
No 234
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=7.5e-22 Score=161.79 Aligned_cols=112 Identities=22% Similarity=0.274 Sum_probs=82.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-CcccChhhhHhHHHHHHHcCCCCCCch
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAMDIRELISLEDVMEELGLGPNGGL 74 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~~~~v~e~i~~~~~l~~~~L~~~~~~ 74 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| +++..+.+ .++.+.+
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l----------- 96 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRENI----------- 96 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHHHHh-----------
Confidence 4689999999999999999999999999999999876421 12222 22111111 1122211
Q ss_pred hhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 75 IYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 75 ~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
++.| +++.||++++. +|+++|+|||++ ||+.++..+. ++++++++ +.+++++
T Consensus 97 ------LS~G~~~rl~la~al~~--~p~llllDEP~~gLD~~~~~~l~-~~l~~~~~-~~tii~~ 151 (171)
T cd03228 97 ------LSGGQRQRIAIARALLR--DPPILILDEATSALDPETEALIL-EALRALAK-GKTVIVI 151 (171)
T ss_pred ------hCHHHHHHHHHHHHHhc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHhcC-CCEEEEE
Confidence 3333 34899999999 999999999999 9999999988 88888854 6666655
No 235
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.87 E-value=8.8e-22 Score=167.93 Aligned_cols=128 Identities=17% Similarity=0.187 Sum_probs=92.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh-----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| ++ ..++++++.
T Consensus 41 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~ 120 (226)
T cd03248 41 EVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECV 120 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHH
Confidence 3689999999999999999999999999999999875421 12222 11 125555443
Q ss_pred --------HHHHHHHc--CCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 59 --------LEDVMEEL--GLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 59 --------~~~~l~~~--~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
++++++.+ |+.+..... ...+++|+ +++||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 121 ~~~~~~~~~~~~l~~l~~gl~~~~~~~--~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~ 195 (226)
T cd03248 121 KEAAQKAHAHSFISELASGYDTEVGEK--GSQLSGGQKQRVAIARALIR--NPQVLILDEATSALDAESEQQVQ-QALYD 195 (226)
T ss_pred HHHHHHcCcHHHHHhccccccchhhcC--CCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHH
Confidence 23445555 554432222 23456554 3899999999 999999999999 9999999988 88888
Q ss_pred HHhCCCeEEEE
Q 025844 126 LKSRNFNVCAV 136 (247)
Q Consensus 126 l~~~~~~ii~v 136 (247)
+++ +.+++++
T Consensus 196 ~~~-~~tii~~ 205 (226)
T cd03248 196 WPE-RRTVLVI 205 (226)
T ss_pred HcC-CCEEEEE
Confidence 855 5676655
No 236
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.7e-21 Score=165.43 Aligned_cols=139 Identities=19% Similarity=0.286 Sum_probs=103.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCC--------CCCC---------CcccChhh------------
Q 025844 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE--------NFDY---------PVAMDIRE------------ 55 (247)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~--------~~~y---------~~~~~v~e------------ 55 (247)
.+|+||||||||||+++++|.++|++|.+.+.|...... .+++ .+..+++|
T Consensus 60 W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~ 139 (257)
T COG1119 60 WAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGI 139 (257)
T ss_pred EEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccc
Confidence 479999999999999999999999999999998655331 1222 11122222
Q ss_pred ---------hHhHHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 025844 56 ---------LISLEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (247)
Q Consensus 56 ---------~i~~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (247)
.-.+..+++.+|+....++.++ .++.|. ++.||||++. +|++||||||++ ||+.++..+. +.+
T Consensus 140 y~~~~~~~~~~~a~~lle~~g~~~la~r~~~--~LS~Ge~rrvLiaRALv~--~P~LLiLDEP~~GLDl~~re~ll-~~l 214 (257)
T COG1119 140 YQEDLTAEDLAAAQWLLELLGAKHLADRPFG--SLSQGEQRRVLIARALVK--DPELLILDEPAQGLDLIAREQLL-NRL 214 (257)
T ss_pred cccCCCHHHHHHHHHHHHHcchhhhccCchh--hcCHhHHHHHHHHHHHhc--CCCEEEecCccccCChHHHHHHH-HHH
Confidence 2237789999999987777654 466654 3899999999 999999999999 9999999998 777
Q ss_pred HHHHhC--CCeEEEEEecccccccchhHHhh
Q 025844 124 DHLKSR--NFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 124 ~~l~~~--~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
.++... +.++++| +|+..|....++
T Consensus 215 ~~~~~~~~~~~ll~V----tHh~eEi~~~~t 241 (257)
T COG1119 215 EELAASPGAPALLFV----THHAEEIPPCFT 241 (257)
T ss_pred HHHhcCCCCceEEEE----Ecchhhcccccc
Confidence 777643 5667666 466665544433
No 237
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.86 E-value=1.6e-21 Score=185.92 Aligned_cols=140 Identities=18% Similarity=0.231 Sum_probs=103.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC----------CCCCCC-C--------cccChhhhHh-----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----------AENFDY-P--------VAMDIRELIS----- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~----------~~~~~y-~--------~~~~v~e~i~----- 58 (247)
-+++|+||||||||||+|+|+|+++ ++|+|+++|.++. ...++| + +..++.+++.
T Consensus 313 e~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~ 391 (529)
T PRK15134 313 ETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRV 391 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHh
Confidence 3689999999999999999999985 8999999986542 122343 1 2346666542
Q ss_pred -------------HHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 025844 59 -------------LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (247)
Q Consensus 59 -------------~~~~l~~~~L~~-~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (247)
+.++++.+++.+ ..... ...+++|++ ++||++++. +|+++|+||||+ ||+.+++.++ +
T Consensus 392 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~ 466 (529)
T PRK15134 392 HQPTLSAAQREQQVIAVMEEVGLDPETRHRY--PAEFSGGQRQRIAIARALIL--KPSLIILDEPTSSLDKTVQAQIL-A 466 (529)
T ss_pred ccccCChHHHHHHHHHHHHHcCCCHHHHhcC--CccCCHHHHHHHHHHHHHhC--CCCEEEeeCCccccCHHHHHHHH-H
Confidence 346677888863 22222 245666654 899999999 999999999999 9999999999 8
Q ss_pred HHHHHHhC-CCeEEEEEecccccccchhHHhh
Q 025844 122 FVDHLKSR-NFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 122 ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++++++ |.+|+++ +|.+.....+++
T Consensus 467 ~l~~~~~~~~~tvi~v----sHd~~~~~~~~d 494 (529)
T PRK15134 467 LLKSLQQKHQLAYLFI----SHDLHVVRALCH 494 (529)
T ss_pred HHHHHHHhhCCEEEEE----eCCHHHHHHhcC
Confidence 99988764 7888766 466655555555
No 238
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=4.6e-21 Score=166.17 Aligned_cols=142 Identities=16% Similarity=0.267 Sum_probs=99.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHh----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~---- 58 (247)
-+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. ..++| ++ ..++.+++.
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~ 110 (251)
T PRK14270 31 KITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPR 110 (251)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCCCcHHHHHHhHHH
Confidence 47899999999999999999999875 78999999876521 12333 11 246666653
Q ss_pred -------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (247)
Q Consensus 59 -------------~~~~l~~~~L~~~--~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (247)
+.++++.+++.+. .........++.|++ +.||++++. +|+++|+|||++ ||+.++..+.
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~- 187 (251)
T PRK14270 111 IHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAV--KPDVILMDEPTSALDPISTLKIE- 187 (251)
T ss_pred hcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-
Confidence 2345666766321 001111234555543 899999999 999999999999 9999999998
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++++.+ +.+++++ +|...+...+++
T Consensus 188 ~~L~~~~~-~~tiiiv----sH~~~~~~~~~d 214 (251)
T PRK14270 188 DLMVELKK-EYTIVIV----THNMQQASRVSD 214 (251)
T ss_pred HHHHHHHh-CCeEEEE----EcCHHHHHHhcC
Confidence 88888865 5666555 355554445444
No 239
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=4.4e-21 Score=167.54 Aligned_cols=142 Identities=18% Similarity=0.232 Sum_probs=102.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCCC---------CCCCC-C-----cccChhhhHh----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-P-----VAMDIRELIS---- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~~---------~~~~y-~-----~~~~v~e~i~---- 58 (247)
-+++|+||||||||||+++|+|+++| ++|+|.++|.+... ..+.| + ...++.+++.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 114 (261)
T PRK14263 35 EITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLR 114 (261)
T ss_pred CEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccccccHHHHHHHHHh
Confidence 47899999999999999999999986 79999999976521 12333 1 1356766664
Q ss_pred -----------HHHHHHHcCCCCCCch--hhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 025844 59 -----------LEDVMEELGLGPNGGL--IYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (247)
Q Consensus 59 -----------~~~~l~~~~L~~~~~~--~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (247)
+.++++.+++.+.... ......++.|+ ++.||++++. +|+++|+||||+ ||+.++..+. ++
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPtsgLD~~~~~~l~-~~ 191 (261)
T PRK14263 115 LNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIAT--EPEVLLLDEPCSALDPIATRRVE-EL 191 (261)
T ss_pred hcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHHHH-HH
Confidence 3457777887542111 11123455554 3899999999 999999999999 9999999998 88
Q ss_pred HHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++++ +.+++++ +|...+...+++
T Consensus 192 l~~~~~-~~tii~i----sH~~~~i~~~~d 216 (261)
T PRK14263 192 MVELKK-DYTIALV----THNMQQAIRVAD 216 (261)
T ss_pred HHHHhc-CCeEEEE----eCCHHHHHHhCC
Confidence 888854 6666555 465555555555
No 240
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.5e-21 Score=171.11 Aligned_cols=142 Identities=18% Similarity=0.251 Sum_probs=99.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHh----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~---- 58 (247)
-+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 40 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~ 119 (269)
T PRK14259 40 KVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGAR 119 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccchhhHHHHHhhhhh
Confidence 3689999999999999999999987 589999999876421 22333 11 126666654
Q ss_pred -----------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 025844 59 -----------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (247)
Q Consensus 59 -----------~~~~l~~~~L~~~--~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (247)
+.++++.+++... .........++.|++ ++||++++. +|+++|+||||+ ||+.++..+. ++
T Consensus 120 ~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~--~p~lllLDEPt~gLD~~~~~~l~-~~ 196 (269)
T PRK14259 120 INGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAI--EPEVILMDEPCSALDPISTLKIE-ET 196 (269)
T ss_pred hcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-HH
Confidence 2334566665321 001111234665543 899999999 999999999999 9999999988 88
Q ss_pred HHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++++ +.+++++ +|...+...+++
T Consensus 197 l~~~~~-~~tiiiv----tH~~~~~~~~~d 221 (269)
T PRK14259 197 MHELKK-NFTIVIV----THNMQQAVRVSD 221 (269)
T ss_pred HHHHhc-CCEEEEE----eCCHHHHHHhcC
Confidence 888854 6676555 455555555554
No 241
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.5e-21 Score=168.54 Aligned_cols=142 Identities=18% Similarity=0.270 Sum_probs=97.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHh----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~---- 58 (247)
-+++|+||||||||||+++|+|+.+ |++|+|.++|.++.. ..++| ++ ..++.+++.
T Consensus 48 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 127 (268)
T PRK14248 48 AVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALK 127 (268)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcccHHHHHHHHHH
Confidence 3689999999999999999999864 689999999876421 12333 11 126666553
Q ss_pred -------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (247)
Q Consensus 59 -------------~~~~l~~~~L~~~--~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (247)
+.+.++.+++... .........+++|++ +.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 128 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l~- 204 (268)
T PRK14248 128 YAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAM--KPAVLLLDEPASALDPISNAKIE- 204 (268)
T ss_pred hcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhC--CCCEEEEcCCCcccCHHHHHHHH-
Confidence 2334555555321 001111234666543 899999999 999999999999 9999999988
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++++++ +.+++++ +|...+...+++
T Consensus 205 ~~l~~~~~-~~tiii~----tH~~~~~~~~~d 231 (268)
T PRK14248 205 ELITELKE-EYSIIIV----THNMQQALRVSD 231 (268)
T ss_pred HHHHHHhc-CCEEEEE----EeCHHHHHHhCC
Confidence 88888855 5666555 355544444444
No 242
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.9e-21 Score=169.08 Aligned_cols=142 Identities=23% Similarity=0.296 Sum_probs=98.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeccCCC---------CCCCCC-Cc-----ccChhhhHh----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS---- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~g~d~~---------~~~~~y-~~-----~~~v~e~i~---- 58 (247)
-+++|+||||||||||+++|+|+++ |++|+|.++|.+.. .+.+.| ++ ..++++++.
T Consensus 47 e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~ 126 (267)
T PRK14237 47 KITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALE 126 (267)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCccccccHHHHHHhHHH
Confidence 3689999999999999999999986 57999999987652 122333 11 136666664
Q ss_pred -------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (247)
Q Consensus 59 -------------~~~~l~~~~L~~~--~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (247)
+.++++.+++.+. .........+++|++ ++||++++. +|+++|+|||++ ||+.++..+.
T Consensus 127 ~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l~- 203 (267)
T PRK14237 127 RAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAV--KPDILLMDEPASALDPISTMQLE- 203 (267)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-
Confidence 2334556666421 000111234555543 899999999 999999999999 9999999988
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++++++ +.+++++ +|...+...+++
T Consensus 204 ~~l~~~~~-~~tiii~----tH~~~~~~~~~d 230 (267)
T PRK14237 204 ETMFELKK-NYTIIIV----THNMQQAARASD 230 (267)
T ss_pred HHHHHHhc-CCEEEEE----ecCHHHHHHhcC
Confidence 88888854 6666555 355554445555
No 243
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=4e-21 Score=167.31 Aligned_cols=142 Identities=18% Similarity=0.273 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc--C---CCceEEEeccCCC---------CCCCCC-Cc-----ccChhhhHh----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE--T---VRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS---- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~--~---~~G~v~i~g~d~~---------~~~~~y-~~-----~~~v~e~i~---- 58 (247)
-+++|+||||||||||+++|+|+++ | ++|+|.++|.++. ...++| ++ ..++++++.
T Consensus 39 e~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 118 (259)
T PRK14274 39 EVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPR 118 (259)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcccccCHHHHHHhHHH
Confidence 3689999999999999999999987 3 5899999987642 122333 11 126666553
Q ss_pred -------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (247)
Q Consensus 59 -------------~~~~l~~~~L~~~--~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (247)
++++++.+++.+. .........++.|++ +.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 119 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~- 195 (259)
T PRK14274 119 IHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALAT--NPDVLLMDEPTSALDPVSTRKIE- 195 (259)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-
Confidence 2334556676431 001111234555543 899999999 999999999999 9999999988
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++++++ +.+++++ +|...+...+++
T Consensus 196 ~~l~~~~~-~~tiiiv----tH~~~~~~~~~d 222 (259)
T PRK14274 196 ELILKLKE-KYTIVIV----THNMQQAARVSD 222 (259)
T ss_pred HHHHHHhc-CCEEEEE----EcCHHHHHHhCC
Confidence 88888864 6676655 355554445544
No 244
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.86 E-value=2.2e-21 Score=184.55 Aligned_cols=129 Identities=16% Similarity=0.084 Sum_probs=97.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC--cCCCceEEEe-----------------------ccCC-------C---------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIV-----------------------NLDP-------A--------- 41 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l--~~~~G~v~i~-----------------------g~d~-------~--------- 41 (247)
-+++|+||||||||||+++|+|++ +|++|+|.+. |.++ .
T Consensus 27 e~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 106 (520)
T TIGR03269 27 EVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRR 106 (520)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhccCHHHHHH
Confidence 468999999999999999999997 7999999986 2111 0
Q ss_pred -CCCCCC--------CcccChhhhHh----------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhh
Q 025844 42 -AENFDY--------PVAMDIRELIS----------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELD 94 (247)
Q Consensus 42 -~~~~~y--------~~~~~v~e~i~----------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~ 94 (247)
...++| .+..++++++. +.++++.+|+....... ...+++|++ ++||++++
T Consensus 107 ~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgGq~qrv~iA~al~ 184 (520)
T TIGR03269 107 IRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHI--ARDLSGGEKQRVVLARQLA 184 (520)
T ss_pred hhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcC--cccCCHHHHHHHHHHHHHh
Confidence 011222 22346666653 45678888886543332 346777654 99999999
Q ss_pred cCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 025844 95 NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV 136 (247)
Q Consensus 95 ~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v 136 (247)
. +|++|||||||+ ||+.++..+. ++++++.+ .|.+|++|
T Consensus 185 ~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tviiv 225 (520)
T TIGR03269 185 K--EPFLFLADEPTGTLDPQTAKLVH-NALEEAVKASGISMVLT 225 (520)
T ss_pred c--CCCEEEeeCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEE
Confidence 9 999999999999 9999999999 88888855 47888766
No 245
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.7e-21 Score=168.70 Aligned_cols=142 Identities=13% Similarity=0.234 Sum_probs=99.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeccCCC---------CCCCCC-Cc-----ccChhhhHh----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS---- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~g~d~~---------~~~~~y-~~-----~~~v~e~i~---- 58 (247)
-+++|+||||||||||+++|+|+++ |++|+|.++|.++. ...+.| ++ ..++++++.
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~ 110 (251)
T PRK14251 31 ELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLK 110 (251)
T ss_pred CEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCCCcHHHHHHHHHH
Confidence 3689999999999999999999997 47999999997642 112333 11 246666654
Q ss_pred -------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (247)
Q Consensus 59 -------------~~~~l~~~~L~~~--~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (247)
+.++++.+++... .........+++|++ ++||++++. +|+++|+|||++ ||+.++..+.
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~--~p~llllDEP~~~LD~~~~~~l~- 187 (251)
T PRK14251 111 IAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAV--RPKVVLLDEPTSALDPISSSEIE- 187 (251)
T ss_pred HcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhc--CCCEEEecCCCccCCHHHHHHHH-
Confidence 2345556666311 011112345666543 899999999 999999999999 9999999988
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++++++ +.+++++ +|...+...+++
T Consensus 188 ~~l~~~~~-~~tiiii----sH~~~~~~~~~d 214 (251)
T PRK14251 188 ETLMELKH-QYTFIMV----THNLQQAGRISD 214 (251)
T ss_pred HHHHHHHc-CCeEEEE----ECCHHHHHhhcC
Confidence 88888854 5677655 455554444444
No 246
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=5.1e-21 Score=165.85 Aligned_cols=142 Identities=20% Similarity=0.293 Sum_probs=98.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeccCCC---------CCCCCC-Cc-----ccChhhhHh----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS---- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~g~d~~---------~~~~~y-~~-----~~~v~e~i~---- 58 (247)
-+++|+||||||||||+++|+|+.+ |++|+|.++|.+.. ...++| ++ ..++.+++.
T Consensus 32 e~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~ 111 (251)
T PRK14244 32 EVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPK 111 (251)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccCCHHHHHHHHHH
Confidence 3689999999999999999999986 47999999986531 112333 11 125555442
Q ss_pred --------------HHHHHHHcCCCCCC--chhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHH
Q 025844 59 --------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (247)
Q Consensus 59 --------------~~~~l~~~~L~~~~--~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~ 119 (247)
+.++++.+++.+.. ........++.|++ ++||++++. +|+++|+||||+ ||+.++..+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~ 189 (251)
T PRK14244 112 LHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAV--KPTMLLMDEPCSALDPVATNVIE 189 (251)
T ss_pred hcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH
Confidence 23567778875411 00111234666543 899999999 999999999999 9999999988
Q ss_pred HHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 120 RNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 120 ~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++++++ +.+++++ +|...+...+++
T Consensus 190 -~~l~~~~~-~~tiiii----sH~~~~~~~~~d 216 (251)
T PRK14244 190 -NLIQELKK-NFTIIVV----THSMKQAKKVSD 216 (251)
T ss_pred -HHHHHHhc-CCeEEEE----eCCHHHHHhhcC
Confidence 88888854 7777665 355554444444
No 247
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=4.5e-21 Score=166.14 Aligned_cols=142 Identities=17% Similarity=0.210 Sum_probs=97.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC--cC---CCceEEEeccCCC---------CCCCCC-Cc-----ccChhhhHh----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC--ET---VRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS---- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l--~~---~~G~v~i~g~d~~---------~~~~~y-~~-----~~~v~e~i~---- 58 (247)
-+++|+||||||||||+++|+|+. +| ++|+|.++|.++. ...+.| ++ ..++++++.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 111 (252)
T PRK14239 32 EITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLR 111 (252)
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCcCcHHHHHHHHHH
Confidence 368999999999999999999985 46 4899999987642 112333 11 246777664
Q ss_pred -------------HHHHHHHcCCCCCC-c-hhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844 59 -------------LEDVMEELGLGPNG-G-LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (247)
Q Consensus 59 -------------~~~~l~~~~L~~~~-~-~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (247)
+.++++.+++.+.. . .......+++|+ ++.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~- 188 (252)
T PRK14239 112 LKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLAT--SPKIILLDEPTSALDPISAGKIE- 188 (252)
T ss_pred HcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHHH-
Confidence 22345556653210 0 001123455554 3899999999 999999999999 9999999998
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++++.+ +.+++++ +|...+...+++
T Consensus 189 ~~l~~~~~-~~tii~~----sH~~~~~~~~~d 215 (252)
T PRK14239 189 ETLLGLKD-DYTMLLV----TRSMQQASRISD 215 (252)
T ss_pred HHHHHHhh-CCeEEEE----ECCHHHHHHhCC
Confidence 88888854 5666555 455554445444
No 248
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.7e-21 Score=184.03 Aligned_cols=141 Identities=13% Similarity=0.181 Sum_probs=104.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-C---------cccChhhh-----H--
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-P---------VAMDIREL-----I-- 57 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-~---------~~~~v~e~-----i-- 57 (247)
-+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..++| + ++.++.++ +
T Consensus 275 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 354 (491)
T PRK10982 275 EILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRN 354 (491)
T ss_pred cEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhh
Confidence 4789999999999999999999999999999999866531 11333 1 22333221 1
Q ss_pred ---------------hHHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 025844 58 ---------------SLEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (247)
Q Consensus 58 ---------------~~~~~l~~~~L~~-~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (247)
.++++++.+++.. ..... ...+++|++ +.||++++. +|++|||||||+ ||+.++..+
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGq~qrv~la~al~~--~p~illLDEPt~gLD~~~~~~~ 430 (491)
T PRK10982 355 YKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ--IGSLSGGNQQKVIIGRWLLT--QPEILMLDEPTRGIDVGAKFEI 430 (491)
T ss_pred hcccccccCcHHHHHHHHHHHHhcCccCCCcccc--cccCCcHHHHHHHHHHHHhc--CCCEEEEcCCCcccChhHHHHH
Confidence 1456777788852 32222 345676654 899999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+ ++++.+++.|.+++++ +|...+...+++
T Consensus 431 ~-~~l~~l~~~~~tvi~v----sHd~~~~~~~~d 459 (491)
T PRK10982 431 Y-QLIAELAKKDKGIIII----SSEMPELLGITD 459 (491)
T ss_pred H-HHHHHHHHCCCEEEEE----CCChHHHHhhCC
Confidence 9 8899987778888666 576666666655
No 249
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.1e-21 Score=167.01 Aligned_cols=142 Identities=18% Similarity=0.269 Sum_probs=98.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHh----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~---- 58 (247)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..+.| ++ ..++++++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~ 109 (250)
T PRK14262 30 QITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPR 109 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCcccHHHHHHHHHH
Confidence 36899999999999999999999884 89999999866421 22333 11 246666654
Q ss_pred -------------HHHHHHHcCCCCCC--chhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844 59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (247)
Q Consensus 59 -------------~~~~l~~~~L~~~~--~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (247)
++++++.+++.+.. ........+++|+ +++||++++. +|+++|+|||++ ||+.++..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~--~p~llllDEP~~~LD~~~~~~l~- 186 (250)
T PRK14262 110 IHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAV--EPEVILLDEPTSALDPIATQRIE- 186 (250)
T ss_pred HcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhC--CCCEEEEeCCccccCHHHHHHHH-
Confidence 23345556664310 0111123455554 3899999999 999999999999 9999999988
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++++++ +.+++++ +|...+...+++
T Consensus 187 ~~l~~~~~-~~tili~----sH~~~~~~~~~d 213 (250)
T PRK14262 187 KLLEELSE-NYTIVIV----THNIGQAIRIAD 213 (250)
T ss_pred HHHHHHhc-CcEEEEE----eCCHHHHHHhCC
Confidence 88888865 6676555 355544444444
No 250
>PRK13409 putative ATPase RIL; Provisional
Probab=99.86 E-value=1.6e-21 Score=187.75 Aligned_cols=141 Identities=16% Similarity=0.182 Sum_probs=105.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC--CCCCCCCCcccChhhhHh-----------HHHHHHHcCCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AAENFDYPVAMDIRELIS-----------LEDVMEELGLG 69 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~--~~~~~~y~~~~~v~e~i~-----------~~~~l~~~~L~ 69 (247)
-+++|+||||||||||+++|+|+++|++|+|.+. ... ..++....+..++++++. ++++++.+++.
T Consensus 366 eiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~ 444 (590)
T PRK13409 366 EVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLE 444 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-eeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCH
Confidence 3789999999999999999999999999999874 211 112222234567777664 35678888887
Q ss_pred CCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEEEeccccccc
Q 025844 70 PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFIT 145 (247)
Q Consensus 70 ~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~ 145 (247)
+..... ...+++|+ +++||++++. +|+++||||||+ ||+.++..+. ++++++++ .|.++++| +|...
T Consensus 445 ~~~~~~--~~~LSGGe~QRvaiAraL~~--~p~llLLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tviiv----sHD~~ 515 (590)
T PRK13409 445 RLLDKN--VKDLSGGELQRVAIAACLSR--DADLYLLDEPSAHLDVEQRLAVA-KAIRRIAEEREATALVV----DHDIY 515 (590)
T ss_pred HHHhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEE----eCCHH
Confidence 543332 34577664 4999999999 999999999999 9999999998 99999865 47788666 35555
Q ss_pred chhHHhhh
Q 025844 146 DVTKFISG 153 (247)
Q Consensus 146 d~~~~~s~ 153 (247)
....+++.
T Consensus 516 ~~~~~aDr 523 (590)
T PRK13409 516 MIDYISDR 523 (590)
T ss_pred HHHHhCCE
Confidence 44555443
No 251
>PRK13409 putative ATPase RIL; Provisional
Probab=99.86 E-value=9.4e-22 Score=189.33 Aligned_cols=128 Identities=23% Similarity=0.259 Sum_probs=99.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEE-----------EeccCCCC---------CCCC----C---Ccc---cC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-----------IVNLDPAA---------ENFD----Y---PVA---MD 52 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~-----------i~g~d~~~---------~~~~----y---~~~---~~ 52 (247)
-+++|+||||||||||+|+|+|+++|+.|+|. +.|.+... ..+. | .+. .+
T Consensus 100 ev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~t 179 (590)
T PRK13409 100 KVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGK 179 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhhcch
Confidence 47899999999999999999999999999997 77755311 1111 1 111 26
Q ss_pred hhhhHh-------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 025844 53 IRELIS-------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (247)
Q Consensus 53 v~e~i~-------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (247)
+++++. ++++++.+++....... ...+++|++ ++||++++. +|+++||||||+ ||+.++..+. ++
T Consensus 180 v~e~l~~~~~~~~~~~~l~~l~l~~~~~~~--~~~LSgGe~qrv~ia~al~~--~p~lllLDEPts~LD~~~~~~l~-~~ 254 (590)
T PRK13409 180 VRELLKKVDERGKLDEVVERLGLENILDRD--ISELSGGELQRVAIAAALLR--DADFYFFDEPTSYLDIRQRLNVA-RL 254 (590)
T ss_pred HHHHHHhhhHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HH
Confidence 777653 57788999997643333 345776653 899999999 999999999999 9999999998 89
Q ss_pred HHHHHhCCCeEEEE
Q 025844 123 VDHLKSRNFNVCAV 136 (247)
Q Consensus 123 l~~l~~~~~~ii~v 136 (247)
++++++ |.+++++
T Consensus 255 i~~l~~-g~tvIiv 267 (590)
T PRK13409 255 IRELAE-GKYVLVV 267 (590)
T ss_pred HHHHHC-CCEEEEE
Confidence 999877 8887766
No 252
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.86 E-value=1.7e-21 Score=163.63 Aligned_cols=129 Identities=16% Similarity=0.170 Sum_probs=91.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC--CcCCCceEEEeccCCCC--------CCCCC-CcccChhhhHhHHHHHHHcCCCCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA--------ENFDY-PVAMDIRELISLEDVMEELGLGPN 71 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~--l~~~~G~v~i~g~d~~~--------~~~~y-~~~~~v~e~i~~~~~l~~~~L~~~ 71 (247)
-+++|+||||||||||+++|+|+ ++|++|+|.++|.++.. ..+.| ++........++++.++..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~----- 101 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYV----- 101 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhc-----
Confidence 36899999999999999999999 57999999999976532 12444 2222222222344443211
Q ss_pred CchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchh
Q 025844 72 GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVT 148 (247)
Q Consensus 72 ~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~ 148 (247)
...+++|+ ++.+|++++. +|+++|+||||+ ||+.++..+. ++++++++.+.+++++ +|....+.
T Consensus 102 ------~~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~-~~L~~~~~~~~tiii~----sh~~~~~~ 168 (200)
T cd03217 102 ------NEGFSGGEKKRNEILQLLLL--EPDLAILDEPDSGLDIDALRLVA-EVINKLREEGKSVLII----THYQRLLD 168 (200)
T ss_pred ------cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHCCCEEEEE----ecCHHHHH
Confidence 02345543 4899999999 999999999999 9999999998 8888886667777665 35544443
Q ss_pred H
Q 025844 149 K 149 (247)
Q Consensus 149 ~ 149 (247)
.
T Consensus 169 ~ 169 (200)
T cd03217 169 Y 169 (200)
T ss_pred H
Confidence 3
No 253
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.7e-21 Score=168.84 Aligned_cols=142 Identities=19% Similarity=0.269 Sum_probs=96.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeccCCC---------CCCCCC-Cc-----ccChhhhHhH---
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELISL--- 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~g~d~~---------~~~~~y-~~-----~~~v~e~i~~--- 59 (247)
-+++|+|+||||||||+++|+|+++ |++|+|.++|.+.. ...++| ++ ..++.+++..
T Consensus 51 e~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~ 130 (271)
T PRK14238 51 EVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPK 130 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccccHHHHHHHHHH
Confidence 4789999999999999999999997 69999999987642 112333 11 1366666641
Q ss_pred --------------HHHHHHcCCCCC--CchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844 60 --------------EDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (247)
Q Consensus 60 --------------~~~l~~~~L~~~--~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (247)
.+.++.+++... .........+++|+ +++||++++. +|+++|+|||++ ||+.++..+.
T Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~--~p~lllLDEPt~~LD~~~~~~l~- 207 (271)
T PRK14238 131 IHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAI--EPDVILMDEPTSALDPISTLKVE- 207 (271)
T ss_pred hcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCcCCHHHHHHHH-
Confidence 122223322100 00011123455554 3899999999 999999999999 9999999998
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++++++ +.+++++ +|.......+++
T Consensus 208 ~~l~~~~~-~~tiiiv----sH~~~~i~~~~d 234 (271)
T PRK14238 208 ELVQELKK-DYSIIIV----THNMQQAARISD 234 (271)
T ss_pred HHHHHHHc-CCEEEEE----EcCHHHHHHhCC
Confidence 88888865 6676555 455554445544
No 254
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.86 E-value=2.8e-21 Score=166.90 Aligned_cols=130 Identities=15% Similarity=0.107 Sum_probs=90.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC--cCCCceEEEeccCCCC--------CCCCC-Ccc------cChhhhH--------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAA--------ENFDY-PVA------MDIRELI-------- 57 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l--~~~~G~v~i~g~d~~~--------~~~~y-~~~------~~v~e~i-------- 57 (247)
-+++|+||||||||||+++|+|++ +|++|+|.++|.+... ..+.| +++ .+...+.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~ 107 (248)
T PRK09580 28 EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVR 107 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhh
Confidence 468999999999999999999995 6999999999876421 12333 111 1111110
Q ss_pred ---------------hHHHHHHHcCCCC-CCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 025844 58 ---------------SLEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (247)
Q Consensus 58 ---------------~~~~~l~~~~L~~-~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (247)
.++++++.+++.+ ...... ...+++|+ +++||++++. +|+++|+||||+ ||+.++..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~LS~G~~qrv~laral~~--~p~illLDEPt~~LD~~~~~~l 184 (248)
T PRK09580 108 SYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV-NVGFSGGEKKRNDILQMAVL--EPELCILDESDSGLDIDALKIV 184 (248)
T ss_pred cccccccchHHHHHHHHHHHHHHcCCChhhcccCC-CCCCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHHH
Confidence 1345566666632 111111 01355554 3899999999 999999999999 999999998
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 025844 119 LRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v 136 (247)
. ++++++++.+.+++++
T Consensus 185 ~-~~l~~l~~~~~tiii~ 201 (248)
T PRK09580 185 A-DGVNSLRDGKRSFIIV 201 (248)
T ss_pred H-HHHHHHHhCCCEEEEE
Confidence 8 8888887667787666
No 255
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.86 E-value=1.8e-21 Score=162.37 Aligned_cols=157 Identities=17% Similarity=0.214 Sum_probs=118.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------------CC--CCCCcccChhhhHh---------
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------EN--FDYPVAMDIRELIS--------- 58 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------------~~--~~y~~~~~v~e~i~--------- 58 (247)
++.|+|.||||||||+++++|.+.|++|+|.++|.|+.. |. -+-.+.+|+.||+.
T Consensus 34 FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~r 113 (263)
T COG1101 34 FVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKR 113 (263)
T ss_pred eEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCccc
Confidence 578999999999999999999999999999999988743 11 11245789999885
Q ss_pred -------------HHHHHHHcCCCCCCchhhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 025844 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (247)
Q Consensus 59 -------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~ 124 (247)
..+-++.++++-...+...+..+++|++.++.-.++....|++|+|||-|+ |||.+...++ ++-.
T Consensus 114 gl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm-~lT~ 192 (263)
T COG1101 114 GLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVM-ELTA 192 (263)
T ss_pred ccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHH-HHHH
Confidence 345555666554333333467889998855554444444999999999999 9999999999 6666
Q ss_pred HHH-hCCCeEEEEEecccccccchhHHhhhhHHHhHHHhhcc
Q 025844 125 HLK-SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLE 165 (247)
Q Consensus 125 ~l~-~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~ 165 (247)
++. +.+.|.++| +|.+.+..+|-.+.++..++.+.++
T Consensus 193 kiV~~~klTtlMV----THnm~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 193 KIVEEHKLTTLMV----THNMEDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred HHHHhcCCceEEE----eccHHHHHhhCCeEEEEeCCeEEEE
Confidence 654 457888777 5899999999887777666655443
No 256
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=8.2e-21 Score=165.68 Aligned_cols=143 Identities=18% Similarity=0.270 Sum_probs=100.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCC-----CceEEEeccCCC---------CCCCCC-Cc-----ccChhhhHh----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS---- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~-----~G~v~i~g~d~~---------~~~~~y-~~-----~~~v~e~i~---- 58 (247)
-+++|+||||||||||+++|+|+++|+ +|+|.++|.++. .+.+.| ++ ..++.+++.
T Consensus 34 e~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~ 113 (261)
T PRK14258 34 KVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVK 113 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCcccHHHHHHHHHH
Confidence 478999999999999999999999985 799999987642 111222 11 146665553
Q ss_pred -------------HHHHHHHcCCCCCC--chhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844 59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (247)
Q Consensus 59 -------------~~~~l~~~~L~~~~--~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (247)
+.++++.+++.... ........++.|++ ++||++++. +|+++|+||||+ ||+.++..+.
T Consensus 114 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~--~p~vllLDEP~~~LD~~~~~~l~- 190 (261)
T PRK14258 114 IVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAV--KPKVLLMDEPCFGLDPIASMKVE- 190 (261)
T ss_pred hcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence 23455667764210 01111234666543 899999999 999999999999 9999999988
Q ss_pred HHHHHHHh-CCCeEEEEEecccccccchhHHhh
Q 025844 121 NFVDHLKS-RNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 121 ~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++++++ .+.+++++ +|...+...+++
T Consensus 191 ~~l~~l~~~~~~tiiiv----sH~~~~i~~~~d 219 (261)
T PRK14258 191 SLIQSLRLRSELTMVIV----SHNLHQVSRLSD 219 (261)
T ss_pred HHHHHHHHhCCCEEEEE----ECCHHHHHHhcC
Confidence 88888764 47777666 466655555555
No 257
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.86 E-value=2.7e-21 Score=162.53 Aligned_cols=131 Identities=23% Similarity=0.226 Sum_probs=87.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEecc-CCCCCCCCCCcccChhhhHh---------HHHHHHHcCCCC--
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-DPAAENFDYPVAMDIRELIS---------LEDVMEELGLGP-- 70 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~-d~~~~~~~y~~~~~v~e~i~---------~~~~l~~~~L~~-- 70 (247)
-+++|+||||||||||+++|+|+.+|++|+|.++|. -...++..+. ..++++++. ..+.++.+++..
T Consensus 32 ~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~-~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~ 110 (204)
T cd03250 32 ELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQ-NGTIRENILFGKPFDEERYEKVIKACALEPDL 110 (204)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhc-cCcHHHHhccCCCcCHHHHHHHHHHcCcHHHH
Confidence 378999999999999999999999999999999871 1001111111 345665553 223333333311
Q ss_pred ----CCc---hhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 71 ----NGG---LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 71 ----~~~---~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
.+. .......++.++ +++||++++. +|+++|+|||++ ||+.+++.+.+.+++.+.+.+.+++++
T Consensus 111 ~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~ 184 (204)
T cd03250 111 EILPDGDLTEIGEKGINLSGGQKQRISLARAVYS--DADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILV 184 (204)
T ss_pred HhccCcccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 100 000012345543 4899999999 999999999999 999999888844667665557777766
No 258
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1e-20 Score=163.92 Aligned_cols=142 Identities=15% Similarity=0.219 Sum_probs=96.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCC-----CceEEEeccCCCC---------CCCCC-------CcccChhhhHhH--
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPAA---------ENFDY-------PVAMDIRELISL-- 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~-----~G~v~i~g~d~~~---------~~~~y-------~~~~~v~e~i~~-- 59 (247)
-+++|+||||||||||+++|+|+++|+ +|+|.++|.+... ..+.| .+..++.+++..
T Consensus 31 e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~ 110 (252)
T PRK14272 31 TVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGL 110 (252)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHH
Confidence 368999999999999999999999874 7999999876421 12333 223577776641
Q ss_pred ---------------HHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHH
Q 025844 60 ---------------EDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (247)
Q Consensus 60 ---------------~~~l~~~~L~~~--~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~ 119 (247)
.+.++.+++... .........+++|++ ++||++++. +|+++|+|||++ ||+.++..+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~ 188 (252)
T PRK14272 111 KLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAV--EPEILLMDEPTSALDPASTARIE 188 (252)
T ss_pred HhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH
Confidence 112223333210 000111234666543 899999999 999999999999 9999999988
Q ss_pred HHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 120 RNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 120 ~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++++++ +.+++++ +|.......+++
T Consensus 189 -~~l~~~~~-~~tiii~----sH~~~~~~~~~d 215 (252)
T PRK14272 189 -DLMTDLKK-VTTIIIV----THNMHQAARVSD 215 (252)
T ss_pred -HHHHHHhc-CCeEEEE----eCCHHHHHHhCC
Confidence 88888864 6676555 455554445544
No 259
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.86 E-value=3.3e-21 Score=163.62 Aligned_cols=132 Identities=16% Similarity=0.251 Sum_probs=93.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------CCCCC-Cc-----ccChhhhHh-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV-----AMDIRELIS------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------~~~~y-~~-----~~~v~e~i~------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| ++ ..++++++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~ 107 (218)
T cd03290 28 QLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNK 107 (218)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccccccHHHHHhhcCcCCH
Confidence 3689999999999999999999999999999998865321 12333 11 346777664
Q ss_pred --HHHHHHHcCCCCCCc---------hhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHH-HH
Q 025844 59 --LEDVMEELGLGPNGG---------LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN-FV 123 (247)
Q Consensus 59 --~~~~l~~~~L~~~~~---------~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~-ll 123 (247)
..++++.+++.+... .......++.|+ +++||++++. +|+++|+||||+ ||+.++..+++. ++
T Consensus 108 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~~~~ll 185 (218)
T cd03290 108 QRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ--NTNIVFLDDPFSALDIHLSDHLMQEGIL 185 (218)
T ss_pred HHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh--CCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence 234555555432100 000123455554 3999999999 999999999999 999999988832 77
Q ss_pred HHHHhCCCeEEEE
Q 025844 124 DHLKSRNFNVCAV 136 (247)
Q Consensus 124 ~~l~~~~~~ii~v 136 (247)
+.+++.+.+++++
T Consensus 186 ~~~~~~~~tii~~ 198 (218)
T cd03290 186 KFLQDDKRTLVLV 198 (218)
T ss_pred HHHhcCCCEEEEE
Confidence 7776667787666
No 260
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=9e-21 Score=164.32 Aligned_cols=142 Identities=18% Similarity=0.258 Sum_probs=97.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCC-----CceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHh----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~-----~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~---- 58 (247)
-+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. ..+.| ++ ..++++++.
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 110 (251)
T PRK14249 31 QITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPR 110 (251)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcCcHHHHHhhHHH
Confidence 368999999999999999999999987 6999999876421 22333 11 126666553
Q ss_pred -------------HHHHHHHcCCCCC--CchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (247)
Q Consensus 59 -------------~~~~l~~~~L~~~--~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (247)
++++++.+++.+. .........+++|+ +++||++++. +|+++|+|||++ ||+.++..+.
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~- 187 (251)
T PRK14249 111 MLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAI--EPEVILMDEPCSALDPVSTMRIE- 187 (251)
T ss_pred hcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence 1223344554321 00011123455554 3899999999 999999999999 9999999988
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+++++++ ++.+++++ +|...+...+++
T Consensus 188 ~~l~~~~-~~~tiliv----sh~~~~~~~~~d 214 (251)
T PRK14249 188 ELMQELK-QNYTIAIV----THNMQQAARASD 214 (251)
T ss_pred HHHHHHh-cCCEEEEE----eCCHHHHHhhCC
Confidence 8888885 47777665 466555555544
No 261
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.7e-21 Score=166.54 Aligned_cols=142 Identities=18% Similarity=0.297 Sum_probs=96.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHh----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~---- 58 (247)
-+++|+||||||||||+++|+|++++ ++|+|.++|.++.. ..+.| ++ ..++.+++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~ 109 (250)
T PRK14240 30 QVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPR 109 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCcccHHHHHHHHHH
Confidence 36899999999999999999999763 68999999876431 12333 11 246666654
Q ss_pred -------------HHHHHHHcCCCCC--CchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (247)
Q Consensus 59 -------------~~~~l~~~~L~~~--~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (247)
+.++++.+++.+. .........++.|+ +++||++++. +|+++|+|||++ ||+.++..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~- 186 (250)
T PRK14240 110 THGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAV--EPEVLLMDEPTSALDPISTLKIE- 186 (250)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence 2233445554310 00011123455554 3899999999 999999999999 9999999988
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++++++ +.+++++ +|...+...+++
T Consensus 187 ~~l~~~~~-~~tiii~----sH~~~~~~~~~d 213 (250)
T PRK14240 187 ELIQELKK-DYTIVIV----THNMQQASRISD 213 (250)
T ss_pred HHHHHHhc-CCeEEEE----EeCHHHHHhhCC
Confidence 88888854 6777655 355544444444
No 262
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.86 E-value=5e-21 Score=201.99 Aligned_cols=144 Identities=15% Similarity=0.198 Sum_probs=112.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC-------CcccChhhhHh-----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y-------~~~~~v~e~i~----------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|+++|.++.. +.++| .+.+|++|++.
T Consensus 957 ei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~ 1036 (2272)
T TIGR01257 957 QITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWE 1036 (2272)
T ss_pred cEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHH
Confidence 4789999999999999999999999999999999987632 22333 34568888764
Q ss_pred -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 025844 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (247)
Q Consensus 59 -----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (247)
++++++++||....... ...+++|++ ++||+|++. +|+++||||||+ ||+.+++.+. +++++++ +|
T Consensus 1037 ~~~~~v~~lL~~vgL~~~~~~~--~~~LSGGqKQRLsLArALi~--~PkVLLLDEPTSGLDp~sr~~l~-~lL~~l~-~g 1110 (2272)
T TIGR01257 1037 EAQLEMEAMLEDTGLHHKRNEE--AQDLSGGMQRKLSVAIAFVG--DAKVVVLDEPTSGVDPYSRRSIW-DLLLKYR-SG 1110 (2272)
T ss_pred HHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHh-CC
Confidence 45678889997654333 346777654 899999999 999999999999 9999999999 8999885 57
Q ss_pred CeEEEEEecccccccchhHHhhhhHH
Q 025844 131 FNVCAVYLLDSQFITDVTKFISGCMA 156 (247)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s~~l~ 156 (247)
.+|+++ +|.+.+...+++.+..
T Consensus 1111 ~TIIlt----THdmdea~~laDrI~i 1132 (2272)
T TIGR01257 1111 RTIIMS----THHMDEADLLGDRIAI 1132 (2272)
T ss_pred CEEEEE----ECCHHHHHHhCCEEEE
Confidence 777655 4666666665554433
No 263
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=9.8e-21 Score=154.84 Aligned_cols=125 Identities=14% Similarity=0.081 Sum_probs=99.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCC------CC-------CCCcccChhhhHh------------
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE------NF-------DYPVAMDIRELIS------------ 58 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~------~~-------~y~~~~~v~e~i~------------ 58 (247)
++.|.||||||||||+|+++|+++|++|+|++.|..+..+ .+ +..+.+|+.||+.
T Consensus 30 ~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~ 109 (209)
T COG4133 30 ALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAA 109 (209)
T ss_pred EEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCCCchh
Confidence 5679999999999999999999999999999998765432 11 2245778888875
Q ss_pred -HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeE
Q 025844 59 -LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (247)
Q Consensus 59 -~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~i 133 (247)
+.+.++.+||........ .+++.|++ ++|||-++. .+++.|||||++ ||......+- .++..-..+|.-|
T Consensus 110 ~i~~Al~~vgL~g~~dlp~--~~LSAGQqRRvAlArL~ls--~~pLWiLDEP~taLDk~g~a~l~-~l~~~H~~~GGiV 183 (209)
T COG4133 110 TIWEALAQVGLAGLEDLPV--GQLSAGQQRRVALARLWLS--PAPLWILDEPFTALDKEGVALLT-ALMAAHAAQGGIV 183 (209)
T ss_pred hHHHHHHHcCcccccccch--hhcchhHHHHHHHHHHHcC--CCCceeecCcccccCHHHHHHHH-HHHHHHhcCCCEE
Confidence 678999999988766664 35666654 999999988 999999999998 9999987776 7766655554434
No 264
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.85 E-value=2.4e-21 Score=159.68 Aligned_cols=110 Identities=15% Similarity=0.170 Sum_probs=84.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC-Ccc-----cChhhhHhHHHHHHHcCCCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-PVA-----MDIRELISLEDVMEELGLGP 70 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y-~~~-----~~v~e~i~~~~~l~~~~L~~ 70 (247)
-+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..+.| +++ .++++++
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i------------- 95 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNL------------- 95 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhh-------------
Confidence 4689999999999999999999999999999999875421 22333 221 2344433
Q ss_pred CCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 71 NGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 71 ~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
...++.+ +++.||++++. +|+++|+|||++ ||+.++..++ +++++++ ++.+++++
T Consensus 96 -------~~~LS~G~~qrv~laral~~--~p~~lllDEP~~~LD~~~~~~l~-~~l~~~~-~~~tii~~ 153 (178)
T cd03247 96 -------GRRFSGGERQRLALARILLQ--DAPIVLLDEPTVGLDPITERQLL-SLIFEVL-KDKTLIWI 153 (178)
T ss_pred -------cccCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHc-CCCEEEEE
Confidence 1234444 34899999999 999999999999 9999999988 8888885 46777665
No 265
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.2e-20 Score=165.60 Aligned_cols=142 Identities=16% Similarity=0.233 Sum_probs=97.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHh----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~---- 58 (247)
-+++|+||||||||||+++|+|++++ ++|+|.++|.+... ..+.| ++ ..++++++.
T Consensus 52 e~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~ 131 (272)
T PRK14236 52 RVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLR 131 (272)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcccHHHHHHHHHH
Confidence 47899999999999999999999874 89999999876531 12333 11 126666653
Q ss_pred -------------HHHHHHHcCCCCC--CchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (247)
Q Consensus 59 -------------~~~~l~~~~L~~~--~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (247)
+.++++.+++.+. .........+++|+ +++||++++. +|+++|+||||+ ||+.++..+.
T Consensus 132 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lllLDEPt~gLD~~~~~~l~- 208 (272)
T PRK14236 132 LQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAI--EPEVLLLDEPTSALDPISTLKIE- 208 (272)
T ss_pred hcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHC--CCCEEEEeCCcccCCHHHHHHHH-
Confidence 2334555666431 00001123455554 3899999999 999999999999 9999999988
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++++++ +.+++++ +|...+...+++
T Consensus 209 ~~L~~~~~-~~tiiiv----tH~~~~~~~~~d 235 (272)
T PRK14236 209 ELITELKS-KYTIVIV----THNMQQAARVSD 235 (272)
T ss_pred HHHHHHHh-CCeEEEE----eCCHHHHHhhCC
Confidence 88888865 5666555 355544444444
No 266
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=7.8e-21 Score=168.01 Aligned_cols=142 Identities=15% Similarity=0.262 Sum_probs=99.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHh----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~---- 58 (247)
-+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..+.| ++ ..++.+++.
T Consensus 66 e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~ 145 (285)
T PRK14254 66 QVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLK 145 (285)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcCCHHHHHHHHHH
Confidence 4789999999999999999999987 689999999866421 12233 11 126666653
Q ss_pred -----------HHHHHHHcCCCCCC--chhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 025844 59 -----------LEDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (247)
Q Consensus 59 -----------~~~~l~~~~L~~~~--~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (247)
++++++.+++.+.. ........+++|+ +++||++++. +|++||||||++ ||+.++..+. ++
T Consensus 146 ~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~--~p~lLLLDEPts~LD~~~~~~l~-~~ 222 (285)
T PRK14254 146 IQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAP--DPEVILMDEPASALDPVATSKIE-DL 222 (285)
T ss_pred HcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCCCCHHHHHHHH-HH
Confidence 34566677774321 0111123466654 3899999999 999999999999 9999999988 88
Q ss_pred HHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++++ +.+++++ +|.......+++
T Consensus 223 L~~~~~-~~tiii~----tH~~~~i~~~~d 247 (285)
T PRK14254 223 IEELAE-EYTVVIV----THNMQQAARISD 247 (285)
T ss_pred HHHHhc-CCEEEEE----eCCHHHHHhhcC
Confidence 888865 3566555 455554444444
No 267
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.5e-21 Score=171.21 Aligned_cols=142 Identities=17% Similarity=0.275 Sum_probs=97.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeccCCC---------CCCCCC-Cc-----ccChhhhHh----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS---- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~g~d~~---------~~~~~y-~~-----~~~v~e~i~---- 58 (247)
-+++|+||||||||||+++|+|+.+ |++|+|.++|.++. ...++| ++ ..++.|++.
T Consensus 66 e~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~ 145 (286)
T PRK14275 66 YVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPR 145 (286)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCccCHHHHHHhHHH
Confidence 4789999999999999999999864 49999999986542 112333 11 126666653
Q ss_pred -------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (247)
Q Consensus 59 -------------~~~~l~~~~L~~~--~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (247)
+.++++.+++... .........+++|++ +.||++++. +|+++|+|||++ ||+.++..+.
T Consensus 146 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~--~p~lllLDEPt~gLD~~~~~~l~- 222 (286)
T PRK14275 146 LHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAV--EPEILLLDEPTSALDPKATAKIE- 222 (286)
T ss_pred hcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence 2244555665310 001111245666543 899999999 999999999999 9999999988
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++++++ +.+++++ +|.......+++
T Consensus 223 ~~L~~~~~-~~tvIiv----sH~~~~~~~~~d 249 (286)
T PRK14275 223 DLIQELRG-SYTIMIV----THNMQQASRVSD 249 (286)
T ss_pred HHHHHHhc-CCeEEEE----eCCHHHHHHhCC
Confidence 88888854 5666555 455554445444
No 268
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=3.7e-21 Score=166.44 Aligned_cols=142 Identities=18% Similarity=0.247 Sum_probs=97.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCCC--------CCCCC-Cc-----ccChhhhHhH----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA--------ENFDY-PV-----AMDIRELISL---- 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~~--------~~~~y-~~-----~~~v~e~i~~---- 59 (247)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..+.| ++ ..++.+++..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~ 109 (249)
T PRK14253 30 QVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRA 109 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCcccHHHHHHhHHHh
Confidence 37899999999999999999999986 58999999865421 12333 11 2466665541
Q ss_pred -------------HHHHHHcCCCCCC--chhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 025844 60 -------------EDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (247)
Q Consensus 60 -------------~~~l~~~~L~~~~--~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (247)
.+.++.+++.+.. ........+++|+ ++.||++++. +|+++|+||||+ ||+.++..+. +
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~ 186 (249)
T PRK14253 110 QGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAM--EPDVILMDEPTSALDPIATHKIE-E 186 (249)
T ss_pred cCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHHHH-H
Confidence 2234445553210 0011123455554 3899999999 999999999999 9999999988 8
Q ss_pred HHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 122 ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+++++++ +.+++++ +|...+...+++
T Consensus 187 ~l~~~~~-~~tii~~----sh~~~~~~~~~d 212 (249)
T PRK14253 187 LMEELKK-NYTIVIV----THSMQQARRISD 212 (249)
T ss_pred HHHHHhc-CCeEEEE----ecCHHHHHHhCC
Confidence 8998865 5677655 455555555555
No 269
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.1e-20 Score=162.83 Aligned_cols=142 Identities=21% Similarity=0.262 Sum_probs=97.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEec------cCCC-------CCCCCC-------CcccChhhhHh----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN------LDPA-------AENFDY-------PVAMDIRELIS---- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g------~d~~-------~~~~~y-------~~~~~v~e~i~---- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.+.| .+.. ...+.| .+..++.+++.
T Consensus 37 e~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~ 116 (257)
T PRK14246 37 SIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLK 116 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHH
Confidence 37899999999999999999999999997766654 3321 112222 23456666553
Q ss_pred -------------HHHHHHHcCCCCCC--chhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844 59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (247)
Q Consensus 59 -------------~~~~l~~~~L~~~~--~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (247)
+.++++.+++.+.. ........++.|+ +.+||++++. +|+++|+||||+ ||+.++..+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~--~P~llllDEPt~~LD~~~~~~l~- 193 (257)
T PRK14246 117 SHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALAL--KPKVLLMDEPTSMIDIVNSQAIE- 193 (257)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHc--CCCEEEEcCCCccCCHHHHHHHH-
Confidence 34556667775310 0001123455554 3899999999 999999999999 9999999888
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+++.++++ +.+++++ +|.......+++
T Consensus 194 ~~l~~~~~-~~tiilv----sh~~~~~~~~~d 220 (257)
T PRK14246 194 KLITELKN-EIAIVIV----SHNPQQVARVAD 220 (257)
T ss_pred HHHHHHhc-CcEEEEE----ECCHHHHHHhCC
Confidence 88888854 5677655 455554444444
No 270
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.85 E-value=3.2e-21 Score=162.45 Aligned_cols=124 Identities=21% Similarity=0.232 Sum_probs=90.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC-------CCCCCC-Cc-----ccChhhhHh------HHHHH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------AENFDY-PV-----AMDIRELIS------LEDVM 63 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~-------~~~~~y-~~-----~~~v~e~i~------~~~~l 63 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+.. ...++| ++ ..++++++. .+++.
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~ 114 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIY 114 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHhcccCCCCHHHHH
Confidence 368999999999999999999999999999999987542 122333 11 236766663 22333
Q ss_pred HHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 64 EELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 64 ~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
+.+++... ...+++++ +++||++++. +|+++|+|||++ ||+.++..+. ++++++. ++.+++++
T Consensus 115 ~~l~~~~~------~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~-~~~tiii~ 180 (207)
T cd03369 115 GALRVSEG------GLNLSQGQRQLLCLARALLK--RPRVLVLDEATASIDYATDALIQ-KTIREEF-TNSTILTI 180 (207)
T ss_pred HHhhccCC------CCcCCHHHHHHHHHHHHHhh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHhc-CCCEEEEE
Confidence 34443222 23455543 4899999999 999999999999 9999999888 8888874 47777655
No 271
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=7.3e-21 Score=165.75 Aligned_cols=142 Identities=20% Similarity=0.293 Sum_probs=99.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHh----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~---- 58 (247)
-+++|+|+||||||||+++|+|+++| ++|+|.++|.+... ..++| ++ ..++.+++.
T Consensus 34 e~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~ 113 (259)
T PRK14260 34 KVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVR 113 (259)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCCccHHHHHHHHHH
Confidence 47899999999999999999999985 48999999875421 12333 11 246666653
Q ss_pred -------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (247)
Q Consensus 59 -------------~~~~l~~~~L~~~--~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (247)
+.++++.+++... .........+++|++ +.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 114 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~- 190 (259)
T PRK14260 114 ISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAI--KPKVLLMDEPCSALDPIATMKVE- 190 (259)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-
Confidence 2345566666321 001111234565543 899999999 999999999999 9999999988
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++++++ +.+++++ +|...+...+++
T Consensus 191 ~~l~~~~~-~~tiii~----tH~~~~i~~~~d 217 (259)
T PRK14260 191 ELIHSLRS-ELTIAIV----THNMQQATRVSD 217 (259)
T ss_pred HHHHHHhc-CCEEEEE----eCCHHHHHHhcC
Confidence 88888855 5677655 466665555555
No 272
>PLN03211 ABC transporter G-25; Provisional
Probab=99.85 E-value=4.2e-21 Score=186.98 Aligned_cols=131 Identities=21% Similarity=0.286 Sum_probs=100.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCC--CceEEEeccCCCC---CCCCC-------CcccChhhhHh------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETV--RRTMHIVNLDPAA---ENFDY-------PVAMDIRELIS------------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~--~G~v~i~g~d~~~---~~~~y-------~~~~~v~e~i~------------ 58 (247)
-+++|+||||||||||+++|+|.++|. +|+|.++|.+... +.++| .+.+|++|++.
T Consensus 95 e~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~ 174 (659)
T PLN03211 95 EILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLT 174 (659)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCC
Confidence 478999999999999999999999885 8999999976421 22333 33567777763
Q ss_pred -------HHHHHHHcCCCCCCchhh---hHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 59 -------LEDVMEELGLGPNGGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 59 -------~~~~l~~~~L~~~~~~~~---~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
++++++.+||.+...... ....+++|+ ++.||++++. +|+++++||||+ ||..++..++ +++++
T Consensus 175 ~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~--~P~iLlLDEPtsgLD~~~~~~l~-~~L~~ 251 (659)
T PLN03211 175 KQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI--NPSLLILDEPTSGLDATAAYRLV-LTLGS 251 (659)
T ss_pred HHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHh--CCCEEEEeCCCCCcCHHHHHHHH-HHHHH
Confidence 456777888865321110 012355554 4999999999 999999999999 9999999999 89999
Q ss_pred HHhCCCeEEEE
Q 025844 126 LKSRNFNVCAV 136 (247)
Q Consensus 126 l~~~~~~ii~v 136 (247)
++++|.+++++
T Consensus 252 l~~~g~TvI~~ 262 (659)
T PLN03211 252 LAQKGKTIVTS 262 (659)
T ss_pred HHhCCCEEEEE
Confidence 87778888665
No 273
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.1e-20 Score=164.60 Aligned_cols=142 Identities=19% Similarity=0.239 Sum_probs=99.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCC--------CCCCCC-Cc-----ccChhhhHh-----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA--------AENFDY-PV-----AMDIRELIS----- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~--------~~~~~y-~~-----~~~v~e~i~----- 58 (247)
-+++|+||||||||||+++|+|+++| ++|+|.++|.+.. ...+.| ++ ..++++++.
T Consensus 48 e~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~ 127 (276)
T PRK14271 48 AVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRA 127 (276)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCCccHHHHHHHHHHh
Confidence 46899999999999999999999985 6999999986542 112333 11 146766654
Q ss_pred ------------HHHHHHHcCCCCCCc--hhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 025844 59 ------------LEDVMEELGLGPNGG--LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (247)
Q Consensus 59 ------------~~~~l~~~~L~~~~~--~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (247)
+.+.++.+++..... .......+++|++ ++||++++. +|+++|+||||+ ||+.+++.+. +
T Consensus 128 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~--~p~lllLDEPt~~LD~~~~~~l~-~ 204 (276)
T PRK14271 128 HKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAV--NPEVLLLDEPTSALDPTTTEKIE-E 204 (276)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-H
Confidence 134456677753110 0111234666543 899999999 999999999999 9999999988 8
Q ss_pred HHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 122 ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+++++++ +.+++++ +|...+...+++
T Consensus 205 ~L~~~~~-~~tiiiv----sH~~~~~~~~~d 230 (276)
T PRK14271 205 FIRSLAD-RLTVIIV----THNLAQAARISD 230 (276)
T ss_pred HHHHHhc-CCEEEEE----eCCHHHHHHhCC
Confidence 8888865 4677655 355554445444
No 274
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=2.9e-21 Score=166.56 Aligned_cols=122 Identities=18% Similarity=0.195 Sum_probs=101.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhH-hHHHHHHHcCCCCCCchhhhHHhh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELI-SLEDVMEELGLGPNGGLIYCMEHL 81 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i-~~~~~l~~~~L~~~~~~~~~~~~l 81 (247)
-+++|+|+|||||||+-|++.|+++|++|+|++.|.|...-. ..+.. .+.++++.+|+.+.-..+++ +.+
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~--------~~~~~~~v~elL~~Vgl~~~~~~ryP-hel 110 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS--------KEERRERVLELLEKVGLPEEFLYRYP-HEL 110 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--------hhHHHHHHHHHHHHhCCCHHHhhcCC-ccc
Confidence 468999999999999999999999999999999998853321 22222 38899999999886666665 467
Q ss_pred hhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 025844 82 EDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV 136 (247)
Q Consensus 82 ~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v 136 (247)
++|++ +.||||++. +|+++++|||++ ||...+.++. +++..+++ .|.+.+++
T Consensus 111 SGGQrQRi~IARALal--~P~liV~DEpvSaLDvSiqaqIl-nLL~dlq~~~~lt~lFI 166 (268)
T COG4608 111 SGGQRQRIGIARALAL--NPKLIVADEPVSALDVSVQAQIL-NLLKDLQEELGLTYLFI 166 (268)
T ss_pred CchhhhhHHHHHHHhh--CCcEEEecCchhhcchhHHHHHH-HHHHHHHHHhCCeEEEE
Confidence 77654 899999999 999999999999 9999999999 99999975 48887666
No 275
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.85 E-value=4.7e-21 Score=162.82 Aligned_cols=130 Identities=22% Similarity=0.202 Sum_probs=92.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-C-----cccChhhhHh---------HH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS---------LE 60 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~-----~~~~v~e~i~---------~~ 60 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| + ...++++++. +.
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~ 110 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELW 110 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHHhCcCCCCCHHHHH
Confidence 3689999999999999999999999999999999865421 12222 1 1236676653 34
Q ss_pred HHHHHcCCCCCCch---------hhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844 61 DVMEELGLGPNGGL---------IYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (247)
Q Consensus 61 ~~l~~~~L~~~~~~---------~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (247)
+.++.+++.+.... ......++.|+ ++.||++++. +|+++|+|||++ ||+.++..+. ++++++.+
T Consensus 111 ~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~ 187 (221)
T cd03244 111 QALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLR--KSKILVLDEATASVDPETDALIQ-KTIREAFK 187 (221)
T ss_pred HHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHhcC
Confidence 45555555321100 00123455544 3899999999 999999999999 9999999888 88888754
Q ss_pred CCCeEEEE
Q 025844 129 RNFNVCAV 136 (247)
Q Consensus 129 ~~~~ii~v 136 (247)
+.+++++
T Consensus 188 -~~tii~~ 194 (221)
T cd03244 188 -DCTVLTI 194 (221)
T ss_pred -CCEEEEE
Confidence 5666555
No 276
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4.8e-21 Score=167.44 Aligned_cols=142 Identities=15% Similarity=0.223 Sum_probs=97.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeccCCC---------CCCCCC-Cc-----ccChhhhHhH---
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELISL--- 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~g~d~~---------~~~~~y-~~-----~~~v~e~i~~--- 59 (247)
-+++|+||||||||||+++|+|+++ |++|+|.++|.++. ...++| ++ ..++.+++..
T Consensus 37 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 116 (264)
T PRK14243 37 QITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGAR 116 (264)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccccccHHHHHHhhhh
Confidence 4789999999999999999999986 37999999987642 112333 11 1366666541
Q ss_pred ------------HHHHHHcCCCCC--CchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 025844 60 ------------EDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (247)
Q Consensus 60 ------------~~~l~~~~L~~~--~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (247)
.++++.+++... .........+++|+ ++.||++++. +|+++|+|||++ ||+.++..+. ++
T Consensus 117 ~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~ 193 (264)
T PRK14243 117 INGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAV--QPEVILMDEPCSALDPISTLRIE-EL 193 (264)
T ss_pred hcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HH
Confidence 223445555210 00001123455554 3899999999 999999999999 9999999988 88
Q ss_pred HHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++.+ +.+++++ +|...+...+++
T Consensus 194 L~~~~~-~~tvi~v----tH~~~~~~~~~d 218 (264)
T PRK14243 194 MHELKE-QYTIIIV----THNMQQAARVSD 218 (264)
T ss_pred HHHHhc-CCEEEEE----ecCHHHHHHhCC
Confidence 888865 4677555 466655555555
No 277
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=3.2e-20 Score=161.05 Aligned_cols=142 Identities=16% Similarity=0.238 Sum_probs=96.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHh----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~---- 58 (247)
-+++|+||||||||||+++|+|+.++ ++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~ 112 (253)
T PRK14261 33 RVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPR 112 (253)
T ss_pred cEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcccHHHHHHhhHH
Confidence 36899999999999999999999763 48999999866421 12333 11 125665553
Q ss_pred -------------HHHHHHHcCCCCCC--chhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844 59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (247)
Q Consensus 59 -------------~~~~l~~~~L~~~~--~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (247)
+.++++.+++.+.- ........+++|++ +.||++++. +|+++|+|||++ ||+.++..+.
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEP~~gLD~~~~~~l~- 189 (253)
T PRK14261 113 IHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAV--NPEVILMDEPCSALDPIATAKIE- 189 (253)
T ss_pred hcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-
Confidence 23445555653210 01111234565543 899999999 999999999999 9999999988
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++++++ +.+++++ +|.......+++
T Consensus 190 ~~l~~~~~-~~tvii~----sh~~~~~~~~~d 216 (253)
T PRK14261 190 DLIEDLKK-EYTVIIV----THNMQQAARVSD 216 (253)
T ss_pred HHHHHHhh-CceEEEE----EcCHHHHHhhCC
Confidence 88888865 5666555 455554444444
No 278
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.84 E-value=5.4e-21 Score=186.33 Aligned_cols=129 Identities=21% Similarity=0.216 Sum_probs=92.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh-------HHHHH
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-------LEDVM 63 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~-------~~~~l 63 (247)
.++|+|+||||||||+|.++|+++|.+|+|.++|.|.+. +.++| ++ +-|++||++ .++++
T Consensus 501 ~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~ 580 (709)
T COG2274 501 KVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEII 580 (709)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHH
Confidence 489999999999999999999999999999999988743 44555 22 337888886 22333
Q ss_pred H------------HcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844 64 E------------ELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (247)
Q Consensus 64 ~------------~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (247)
+ .+-+|-+...-..-..+++|++ .+|||++.. +|++|||||||+ ||+.+.+.+. +-+.++.
T Consensus 581 ~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~--~P~ILlLDEaTSaLD~~sE~~I~-~~L~~~~- 656 (709)
T COG2274 581 EAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLS--KPKILLLDEATSALDPETEAIIL-QNLLQIL- 656 (709)
T ss_pred HHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhcc--CCCEEEEeCcccccCHhHHHHHH-HHHHHHh-
Confidence 3 2211110000000013556654 899999999 999999999999 9999998888 6666664
Q ss_pred CCCeEEEE
Q 025844 129 RNFNVCAV 136 (247)
Q Consensus 129 ~~~~ii~v 136 (247)
.|.|+|++
T Consensus 657 ~~~T~I~I 664 (709)
T COG2274 657 QGRTVIII 664 (709)
T ss_pred cCCeEEEE
Confidence 35666655
No 279
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=8.8e-21 Score=180.84 Aligned_cols=139 Identities=16% Similarity=0.155 Sum_probs=96.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC-CC--CCCCCCCcccChhhhHh---------------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PA--AENFDYPVAMDIRELIS--------------------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d-~~--~~~~~y~~~~~v~e~i~--------------------- 58 (247)
-+++|+||||||||||+|+|+|+++|++|+|.+.|.. .+ .+.....+..++.+++.
T Consensus 28 e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~ 107 (530)
T PRK15064 28 NRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPE 107 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccc
Confidence 4689999999999999999999999999999987631 10 11111223334443321
Q ss_pred ---------------------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc
Q 025844 59 ---------------------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ 109 (247)
Q Consensus 59 ---------------------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~ 109 (247)
+.++++.+|+...... .....+++|++ ++||++++. +|++|||||||+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~~LSgGq~qrv~lA~aL~~--~p~lLlLDEPt~ 184 (530)
T PRK15064 108 MSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHY-GLMSEVAPGWKLRVLLAQALFS--NPDILLLDEPTN 184 (530)
T ss_pred cccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhc-CchhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCc
Confidence 3456777888542111 12356777654 899999999 999999999999
Q ss_pred -ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 110 -IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 110 -LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
||+.++..+. ++++ +.+.+|++| +|.......+++
T Consensus 185 ~LD~~~~~~l~-~~l~---~~~~tiiiv----sHd~~~~~~~~d 220 (530)
T PRK15064 185 NLDINTIRWLE-DVLN---ERNSTMIII----SHDRHFLNSVCT 220 (530)
T ss_pred ccCHHHHHHHH-HHHH---hCCCeEEEE----eCCHHHHHhhcc
Confidence 9999998877 6654 346777666 355554455554
No 280
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.84 E-value=1.1e-20 Score=154.23 Aligned_cols=108 Identities=17% Similarity=0.166 Sum_probs=81.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCC------CcccChhhhHhHHHHHHHcCCCCCCchhh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY------PVAMDIRELISLEDVMEELGLGPNGGLIY 76 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y------~~~~~v~e~i~~~~~l~~~~L~~~~~~~~ 76 (247)
-+++|+||||||||||+++|+|+++|++|+|.+.|. ..+.| ....++++++... .
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~----~~i~~~~q~~~~~~~tv~~nl~~~---------~------ 88 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG----EDLLFLPQRPYLPLGTLREQLIYP---------W------ 88 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC----ceEEEECCCCccccccHHHHhhcc---------C------
Confidence 368999999999999999999999999999999763 12222 1234666665321 0
Q ss_pred hHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 77 CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 77 ~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
...+++++ ++.+|++++. +|+++|+|||++ ||+.++..+. ++++++ +.+++++
T Consensus 89 -~~~LS~G~~~rv~laral~~--~p~~lllDEPt~~LD~~~~~~l~-~~l~~~---~~tiiiv 144 (166)
T cd03223 89 -DDVLSGGEQQRLAFARLLLH--KPKFVFLDEATSALDEESEDRLY-QLLKEL---GITVISV 144 (166)
T ss_pred -CCCCCHHHHHHHHHHHHHHc--CCCEEEEECCccccCHHHHHHHH-HHHHHh---CCEEEEE
Confidence 12355544 4899999999 999999999999 9999998887 777765 4666655
No 281
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.84 E-value=2.6e-20 Score=163.91 Aligned_cols=129 Identities=20% Similarity=0.201 Sum_probs=93.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh---------HH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE 60 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~---------~~ 60 (247)
-+++|+||||||||||+++|+|+++ .+|+|+++|.++.. ..+.| ++ ..++++++. +.
T Consensus 31 e~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~ 109 (275)
T cd03289 31 QRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIW 109 (275)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHhhhccCCCHHHHH
Confidence 3689999999999999999999998 78999999976532 12333 11 226777663 45
Q ss_pred HHHHHcCCCCCCchhhh-H--------HhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844 61 DVMEELGLGPNGGLIYC-M--------EHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (247)
Q Consensus 61 ~~l~~~~L~~~~~~~~~-~--------~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (247)
++++.+|+.+....... + ..++.|+ ++.||++++. +|+++|+||||+ ||+.+...+. +.++++.
T Consensus 110 ~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~--~p~illlDEpts~LD~~~~~~l~-~~l~~~~- 185 (275)
T cd03289 110 KVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLS--KAKILLLDEPSAHLDPITYQVIR-KTLKQAF- 185 (275)
T ss_pred HHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECccccCCHHHHHHHH-HHHHHhc-
Confidence 67777777542211100 0 0145444 3899999999 999999999999 9999998887 7777764
Q ss_pred CCCeEEEE
Q 025844 129 RNFNVCAV 136 (247)
Q Consensus 129 ~~~~ii~v 136 (247)
.+.+++++
T Consensus 186 ~~~tii~i 193 (275)
T cd03289 186 ADCTVILS 193 (275)
T ss_pred CCCEEEEE
Confidence 47777666
No 282
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.9e-20 Score=161.00 Aligned_cols=142 Identities=16% Similarity=0.264 Sum_probs=96.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHh----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~---- 58 (247)
-+++|+||||||||||+++|+|+.+ |++|+|.++|.++.. ..++| ++ ..++.+++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~ 109 (250)
T PRK14266 30 SVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLR 109 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcchHHHHHHhHHh
Confidence 4789999999999999999999864 389999999976421 12333 11 125555543
Q ss_pred -------------HHHHHHHcCCCCCC--chhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844 59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (247)
Q Consensus 59 -------------~~~~l~~~~L~~~~--~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (247)
+.++++.+++...- ........++.|++ +.||++++. +|+++|+|||++ ||+.++..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~--~p~llllDEP~~gLD~~~~~~l~- 186 (250)
T PRK14266 110 IHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAV--SPEVILMDEPCSALDPISTTKIE- 186 (250)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEcCCCccCCHHHHHHHH-
Confidence 23345566653210 00011234555543 899999999 999999999999 9999999988
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++++++ +.+++++ +|...+...+++
T Consensus 187 ~~l~~~~~-~~tiii~----sh~~~~~~~~~~ 213 (250)
T PRK14266 187 DLIHKLKE-DYTIVIV----THNMQQATRVSK 213 (250)
T ss_pred HHHHHHhc-CCeEEEE----ECCHHHHHhhcC
Confidence 88888854 6677655 355554444444
No 283
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.4e-20 Score=163.13 Aligned_cols=142 Identities=18% Similarity=0.268 Sum_probs=95.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc--C---CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHhH---
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE--T---VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELISL--- 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~--~---~~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~~--- 59 (247)
-+++|+||||||||||+++|+|+.+ | ++|+|.++|.++.. ..+.| ++ ..++.+++..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~ 111 (252)
T PRK14255 32 EITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLR 111 (252)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCCCcHHHHHHHHHH
Confidence 3789999999999999999999875 4 58999999876421 12333 11 1366666541
Q ss_pred --------------HHHHHHcCCCCCC--chhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844 60 --------------EDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (247)
Q Consensus 60 --------------~~~l~~~~L~~~~--~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (247)
.+.++.+++.... ........++.|++ +.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~- 188 (252)
T PRK14255 112 LAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAV--KPDVILLDEPTSALDPISSTQIE- 188 (252)
T ss_pred HcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-
Confidence 2234445543110 01111234555543 899999999 999999999999 9999999988
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++++++ +.+++++ +|.......+++
T Consensus 189 ~~l~~~~~-~~tii~v----sH~~~~~~~~~d 215 (252)
T PRK14255 189 NMLLELRD-QYTIILV----THSMHQASRISD 215 (252)
T ss_pred HHHHHHHh-CCEEEEE----ECCHHHHHHhCC
Confidence 88888865 4666655 355444444444
No 284
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.7e-20 Score=164.85 Aligned_cols=142 Identities=18% Similarity=0.207 Sum_probs=97.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHhH---
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELISL--- 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~~--- 59 (247)
-+++|+||||||||||+++|+|++++ ++|+|.++|.+... ..+.| ++ ..++.+++..
T Consensus 47 e~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~ 126 (274)
T PRK14265 47 KIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPR 126 (274)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccccHHHHHHhHHH
Confidence 36899999999999999999999863 58999999876421 12333 11 1266666532
Q ss_pred ------------HHHHHHcCCCCCCc--hhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 025844 60 ------------EDVMEELGLGPNGG--LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (247)
Q Consensus 60 ------------~~~l~~~~L~~~~~--~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (247)
.+.++.+++..... .......+++|+ ++.||++++. +|+++|+||||+ ||+.++..+. ++
T Consensus 127 ~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~--~p~lllLDEPt~~LD~~~~~~l~-~~ 203 (274)
T PRK14265 127 ANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAM--KPDVLLMDEPCSALDPISTRQVE-EL 203 (274)
T ss_pred hcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhh--CCCEEEEeCCcccCCHHHHHHHH-HH
Confidence 23455555531100 001123455554 3899999999 999999999999 9999999998 88
Q ss_pred HHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++++++ +.+++++ +|.......+++
T Consensus 204 L~~~~~-~~tiii~----sH~~~~~~~~~d 228 (274)
T PRK14265 204 CLELKE-QYTIIMV----THNMQQASRVAD 228 (274)
T ss_pred HHHHhc-CCEEEEE----eCCHHHHHHhCC
Confidence 888864 5666555 466555555554
No 285
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.84 E-value=3.1e-20 Score=163.47 Aligned_cols=163 Identities=16% Similarity=0.249 Sum_probs=118.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc-C----CCceEEEeccCCCC-----------CCCCC---------CcccChhhhH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE-T----VRRTMHIVNLDPAA-----------ENFDY---------PVAMDIRELI 57 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~-~----~~G~v~i~g~d~~~-----------~~~~y---------~~~~~v~e~i 57 (247)
-+++|+|.+||||||+.+++.|+++ + .+|+|.++|.|... ..+++ .|-++|.+++
T Consensus 32 E~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi 111 (316)
T COG0444 32 EILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQI 111 (316)
T ss_pred cEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHH
Confidence 4789999999999999999999998 3 57899999986521 12222 2333444333
Q ss_pred h------------------HHHHHHHcCCCCC--CchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHh
Q 025844 58 S------------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFT 114 (247)
Q Consensus 58 ~------------------~~~~l~~~~L~~~--~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~ 114 (247)
. +.++++.+|+.+. .-..|+ ..+++|++ +.||.|++. +|++||.||||+ ||...
T Consensus 112 ~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP-helSGGMrQRV~IAmala~--~P~LlIADEPTTALDvt~ 188 (316)
T COG0444 112 AEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP-HELSGGMRQRVMIAMALAL--NPKLLIADEPTTALDVTV 188 (316)
T ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC-cccCCcHHHHHHHHHHHhC--CCCEEEeCCCcchhhHHH
Confidence 1 5678888899765 223333 45777764 889999999 999999999999 99999
Q ss_pred HHHHHHHHHHHHHh-CCCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccchhhhhhhcc
Q 025844 115 HVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLN 189 (247)
Q Consensus 115 ~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~~~~~~~~~ 189 (247)
+.+++ ++++++++ .|.++++| +|.+.-...+++ .|.|+....+++.. ..++++.
T Consensus 189 QaqIl-~Ll~~l~~e~~~aiilI----THDl~vva~~aD---------------ri~VMYaG~iVE~g-~~~~i~~ 243 (316)
T COG0444 189 QAQIL-DLLKELQREKGTALILI----THDLGVVAEIAD---------------RVAVMYAGRIVEEG-PVEEIFK 243 (316)
T ss_pred HHHHH-HHHHHHHHhcCCEEEEE----eCCHHHHHHhcc---------------eEEEEECcEEEEeC-CHHHHhc
Confidence 99999 99999986 58888777 466655555555 55666666666654 3444433
No 286
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.84 E-value=5.2e-20 Score=174.28 Aligned_cols=137 Identities=18% Similarity=0.191 Sum_probs=94.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEecc-CC--CCCCCCCCcccChhhhHh---------------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-DP--AAENFDYPVAMDIRELIS--------------------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~-d~--~~~~~~y~~~~~v~e~i~--------------------- 58 (247)
-.+||||+||||||||+|+|+|.+.|++|+|...+. .. -.|+.+.....++.+.+.
T Consensus 30 ~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~ 109 (530)
T COG0488 30 ERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcc
Confidence 368999999999999999999999999999988652 11 123333333334444332
Q ss_pred -------------------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-c
Q 025844 59 -------------------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-I 110 (247)
Q Consensus 59 -------------------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-L 110 (247)
+..++..+|+.+. .. .+..+++|++ ++||++|.. +|++|+|||||+ |
T Consensus 110 ~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~--~~~~LSGG~r~Rv~LA~aL~~--~pDlLLLDEPTNHL 184 (530)
T COG0488 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DR--PVSSLSGGWRRRVALARALLE--EPDLLLLDEPTNHL 184 (530)
T ss_pred cchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cC--chhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCccc
Confidence 2344445566554 22 2467888765 999999999 999999999999 9
Q ss_pred cHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhH
Q 025844 111 ELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTK 149 (247)
Q Consensus 111 D~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~ 149 (247)
|..+...+- +.+... .| ++|+|. ||-+++...+.
T Consensus 185 D~~~i~WLe-~~L~~~--~g-tviiVS-HDR~FLd~V~t 218 (530)
T COG0488 185 DLESIEWLE-DYLKRY--PG-TVIVVS-HDRYFLDNVAT 218 (530)
T ss_pred CHHHHHHHH-HHHHhC--CC-cEEEEe-CCHHHHHHHhh
Confidence 999875544 554432 45 777774 77777654443
No 287
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.83 E-value=1.6e-20 Score=180.65 Aligned_cols=129 Identities=19% Similarity=0.151 Sum_probs=93.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh-----------H
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-----------L 59 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~-----------~ 59 (247)
.++|+||||||||||+++|+|+++|++|+|.++|.+... +.++| +| +-|+++|+. +
T Consensus 371 ~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i 450 (582)
T PRK11176 371 TVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQI 450 (582)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHH
Confidence 589999999999999999999999999999999987532 33444 22 347777775 3
Q ss_pred HHHHHHcCCCC------CCchh---hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844 60 EDVMEELGLGP------NGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (247)
Q Consensus 60 ~~~l~~~~L~~------~~~~~---~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (247)
+++++..++.+ +|-.. ..-..+++|+ +.+|||++.. +|+++|+||||+ ||+.+...++ +.+.++.
T Consensus 451 ~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~--~~~ililDEptsaLD~~t~~~i~-~~l~~~~ 527 (582)
T PRK11176 451 EEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR--DSPILILDEATSALDTESERAIQ-AALDELQ 527 (582)
T ss_pred HHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHh--CCCEEEEECccccCCHHHHHHHH-HHHHHHh
Confidence 44555544321 11000 0002356654 4899999999 999999999999 9999999988 7777764
Q ss_pred hCCCeEEEE
Q 025844 128 SRNFNVCAV 136 (247)
Q Consensus 128 ~~~~~ii~v 136 (247)
++.|+++|
T Consensus 528 -~~~tvI~V 535 (582)
T PRK11176 528 -KNRTSLVI 535 (582)
T ss_pred -CCCEEEEE
Confidence 45777666
No 288
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.83 E-value=4.7e-20 Score=177.40 Aligned_cols=130 Identities=20% Similarity=0.250 Sum_probs=97.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh----------H
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------~ 59 (247)
-.++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| +| +-|++||+. +
T Consensus 367 ~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i 446 (574)
T PRK11160 367 EKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEAL 446 (574)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHH
Confidence 3689999999999999999999999999999999987542 22333 22 347888885 5
Q ss_pred HHHHHHcCCCCC-----Cchhh---hHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844 60 EDVMEELGLGPN-----GGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (247)
Q Consensus 60 ~~~l~~~~L~~~-----~~~~~---~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (247)
.++++..++.+. |-... .-..+++|+ +.+|||++.. +|+++|+||||+ ||+.+...+. +.++++.
T Consensus 447 ~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~--~~~ililDE~ts~lD~~t~~~i~-~~l~~~~- 522 (574)
T PRK11160 447 IEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLH--DAPLLLLDEPTEGLDAETERQIL-ELLAEHA- 522 (574)
T ss_pred HHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHc-
Confidence 667777776532 10000 012355554 4899999999 999999999999 9999998888 7777764
Q ss_pred CCCeEEEE
Q 025844 129 RNFNVCAV 136 (247)
Q Consensus 129 ~~~~ii~v 136 (247)
++.+++++
T Consensus 523 ~~~tviii 530 (574)
T PRK11160 523 QNKTVLMI 530 (574)
T ss_pred CCCEEEEE
Confidence 46777655
No 289
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.83 E-value=4.4e-20 Score=172.98 Aligned_cols=163 Identities=20% Similarity=0.263 Sum_probs=124.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCC----CceEEEeccCCCC-----------CCCCC---------CcccChhhhHh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETV----RRTMHIVNLDPAA-----------ENFDY---------PVAMDIRELIS 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~----~G~v~i~g~d~~~-----------~~~~y---------~~~~~v~e~i~ 58 (247)
-++||+|.+||||||+.+++.|++++. +|+|.++|.|... ..++| .|-++|.+.+.
T Consensus 36 E~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~ 115 (539)
T COG1123 36 EILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIR 115 (539)
T ss_pred cEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHH
Confidence 478999999999999999999999987 7999999976421 22222 34456666654
Q ss_pred -----------------HHHHHHHcCCCCCCch-hhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHH
Q 025844 59 -----------------LEDVMEELGLGPNGGL-IYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (247)
Q Consensus 59 -----------------~~~~l~~~~L~~~~~~-~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~ 117 (247)
+.++++++|+.+.... .|+ +.+++|++ +.||+|++. +|++||+||||. ||+..+.+
T Consensus 116 E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yP-heLSGG~rQRv~iAmALa~--~P~LLIaDEPTTaLDvt~q~q 192 (539)
T COG1123 116 EALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYP-HQLSGGMRQRVMIAMALAL--KPKLLIADEPTTALDVTTQAQ 192 (539)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCC-cccCchHHHHHHHHHHHhC--CCCEEEECCCccccCHHHHHH
Confidence 6789999999876554 344 56787764 899999999 999999999999 99999999
Q ss_pred HHHHHHHHHHh-CCCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccchhhhhhhcc
Q 025844 118 VLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLN 189 (247)
Q Consensus 118 ~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~~~~~~~~~ 189 (247)
++ ++++.+.+ .|+++++| +|.+.-.+.+++ .+.|+-+..+++.. .-++++.
T Consensus 193 IL-~llk~l~~e~g~a~l~I----THDl~Vva~~aD---------------rv~Vm~~G~iVE~G-~~~~i~~ 244 (539)
T COG1123 193 IL-DLLKDLQRELGMAVLFI----THDLGVVAELAD---------------RVVVMYKGEIVETG-PTEEILS 244 (539)
T ss_pred HH-HHHHHHHHHcCcEEEEE----cCCHHHHHHhcC---------------eEEEEECCEEEEec-CHHHHHh
Confidence 99 99999975 58888776 466665556555 55677777777654 3333333
No 290
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.83 E-value=1.6e-20 Score=154.63 Aligned_cols=160 Identities=16% Similarity=0.307 Sum_probs=118.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEec-cCCCC---------------CCCCCCcccChhhhHh---------
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN-LDPAA---------------ENFDYPVAMDIRELIS--------- 58 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g-~d~~~---------------~~~~y~~~~~v~e~i~--------- 58 (247)
.-+|||||||||||++.+|+|-.+|+.|+|++.| .|... |....+.+++|+||+.
T Consensus 33 lr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v 112 (249)
T COG4674 33 LRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSV 112 (249)
T ss_pred EEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcch
Confidence 3579999999999999999999999999999999 55432 2222345778888875
Q ss_pred ---------------HHHHHHHcCCCCCCchhhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 025844 59 ---------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (247)
Q Consensus 59 ---------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (247)
++++++..||++...... ..++.++..|+...+....+|++|++|||.+ +--....... ++
T Consensus 113 ~a~L~~r~~~~e~~ride~La~igL~~~~~~~A--~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~ta-eL 189 (249)
T COG4674 113 FASLFARLRAEERRRIDELLATIGLGDERDRLA--ALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTA-EL 189 (249)
T ss_pred HHHhhhhcChhHHHHHHHHHHHcccchhhhhhh--hhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHH-HH
Confidence 789999999999877664 4577777777655444333999999999998 7666667777 89
Q ss_pred HHHHHhCCCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccchhhhhhh
Q 025844 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDY 187 (247)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~~~~~~~ 187 (247)
++.+++ +.+|++| -+|..++..... ++.|+...-.+... +++..
T Consensus 190 l~~la~-~hsilVV-EHDM~Fvr~~A~------------------~VTVlh~G~VL~EG-sld~v 233 (249)
T COG4674 190 LKSLAG-KHSILVV-EHDMGFVREIAD------------------KVTVLHEGSVLAEG-SLDEV 233 (249)
T ss_pred HHHHhc-CceEEEE-eccHHHHHHhhh------------------eeEEEeccceeecc-cHHHh
Confidence 999964 4667666 366666543332 66788777776655 55443
No 291
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.83 E-value=5.9e-20 Score=159.95 Aligned_cols=128 Identities=18% Similarity=0.133 Sum_probs=87.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh---------HH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE 60 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~---------~~ 60 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| ++ ..++++++. +.
T Consensus 48 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~ 127 (257)
T cd03288 48 QKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLW 127 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHH
Confidence 3689999999999999999999999999999999876421 12222 11 124444432 22
Q ss_pred HHHHHcCCC-----------CCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844 61 DVMEELGLG-----------PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (247)
Q Consensus 61 ~~l~~~~L~-----------~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (247)
+.++..++. +..... ...++.++ ++.||++++. +|+++|+||||+ ||+.++..+. ++++.+
T Consensus 128 ~~l~~~~l~~~~~~~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~l~~~ 202 (257)
T cd03288 128 EALEIAQLKNMVKSLPGGLDAVVTEG--GENFSVGQRQLFCLARAFVR--KSSILIMDEATASIDMATENILQ-KVVMTA 202 (257)
T ss_pred HHHHHhCcHHHHhhcccccCcEeccC--CCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHh
Confidence 333333332 111110 12355543 3899999999 999999999999 9999988887 878777
Q ss_pred HhCCCeEEEE
Q 025844 127 KSRNFNVCAV 136 (247)
Q Consensus 127 ~~~~~~ii~v 136 (247)
. ++.+++++
T Consensus 203 ~-~~~tiii~ 211 (257)
T cd03288 203 F-ADRTVVTI 211 (257)
T ss_pred c-CCCEEEEE
Confidence 4 46777655
No 292
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=6.2e-20 Score=165.35 Aligned_cols=142 Identities=16% Similarity=0.287 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeccCCCC---------CCCCC------CcccChhhhHh----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY------PVAMDIRELIS---- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~g~d~~~---------~~~~y------~~~~~v~e~i~---- 58 (247)
-+++|+||||||||||+++|+|+.+ |++|+|.++|.+... ..++| ....++++++.
T Consensus 109 e~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~ 188 (329)
T PRK14257 109 KVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPR 188 (329)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHH
Confidence 4689999999999999999999986 579999999987631 22333 11357777775
Q ss_pred -------------HHHHHHHcCCCCCC--chhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844 59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (247)
Q Consensus 59 -------------~~~~l~~~~L~~~~--~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (247)
+.++++.+++.+.. ..-.....+++|+ ++.||||++. +|+++|+||||+ ||+.+...+.
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~--~p~IlLLDEPts~LD~~~~~~i~- 265 (329)
T PRK14257 189 NNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIAL--EPEVLLMDEPTSALDPIATAKIE- 265 (329)
T ss_pred hcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-
Confidence 22345666653210 0001123455554 3899999999 999999999999 9999998877
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+.++.+.+ +.+++++ +|.+.....+++
T Consensus 266 ~~i~~l~~-~~Tii~i----TH~l~~i~~~~D 292 (329)
T PRK14257 266 ELILELKK-KYSIIIV----THSMAQAQRISD 292 (329)
T ss_pred HHHHHHhc-CCEEEEE----eCCHHHHHHhCC
Confidence 88888865 5777666 465555445444
No 293
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=5.2e-20 Score=160.91 Aligned_cols=142 Identities=18% Similarity=0.256 Sum_probs=96.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCC-----------CCCCCC-Cc-----ccChhhhHh--
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA-----------AENFDY-PV-----AMDIRELIS-- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~-----------~~~~~y-~~-----~~~v~e~i~-- 58 (247)
-+++|+||||||||||+++|+|+.+| ++|+|.++|.+.. ...++| ++ ..++++++.
T Consensus 43 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~ 122 (265)
T PRK14252 43 QVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYG 122 (265)
T ss_pred cEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcchHHHHHHhH
Confidence 47899999999999999999999875 7999999875431 112333 11 126666654
Q ss_pred ---------------HHHHHHHcCCCCC--CchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 025844 59 ---------------LEDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (247)
Q Consensus 59 ---------------~~~~l~~~~L~~~--~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (247)
+.++++.+++.+. .........++.|. ++.||++++. +|+++|+|||++ ||+.++..+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~gLD~~~~~~l 200 (265)
T PRK14252 123 LRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALAT--DPEILLFDEPTSALDPIATASI 200 (265)
T ss_pred HHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHHH
Confidence 1234445555310 00001122355543 3899999999 999999999999 999999998
Q ss_pred HHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
. ++++++++ +.+++++ +|...+...+++
T Consensus 201 ~-~~l~~l~~-~~tiiiv----th~~~~~~~~~d 228 (265)
T PRK14252 201 E-ELISDLKN-KVTILIV----THNMQQAARVSD 228 (265)
T ss_pred H-HHHHHHHh-CCEEEEE----ecCHHHHHHhCC
Confidence 8 88888865 5677655 355554445544
No 294
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.9e-20 Score=177.26 Aligned_cols=138 Identities=15% Similarity=0.152 Sum_probs=98.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC---CCCCC--CCCcccChhhhHh-----------HHHHHHHc
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---AAENF--DYPVAMDIRELIS-----------LEDVMEEL 66 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~---~~~~~--~y~~~~~v~e~i~-----------~~~~l~~~ 66 (247)
-+++|+||||||||||+++|+|+++|++|+|.+.|... -.+.. .+++..++.+++. ++++++.+
T Consensus 346 e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~ 425 (530)
T PRK15064 346 ERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRL 425 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHc
Confidence 37899999999999999999999999999999876321 11221 1233456666542 45678888
Q ss_pred CCC-CCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccc
Q 025844 67 GLG-PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ 142 (247)
Q Consensus 67 ~L~-~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~ 142 (247)
++. ...... ...+++|++ +.||++++. +|+++|+||||+ ||+.++..+. ++++++ +.+++++ +|
T Consensus 426 ~l~~~~~~~~--~~~LSgGq~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~---~~tvi~v----sH 493 (530)
T PRK15064 426 LFSQDDIKKS--VKVLSGGEKGRMLFGKLMMQ--KPNVLVMDEPTNHMDMESIESLN-MALEKY---EGTLIFV----SH 493 (530)
T ss_pred CCChhHhcCc--ccccCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHC---CCEEEEE----eC
Confidence 884 222222 345666654 899999999 999999999999 9999998887 777665 3466555 45
Q ss_pred cccchhHHhh
Q 025844 143 FITDVTKFIS 152 (247)
Q Consensus 143 ~~~d~~~~~s 152 (247)
.......+++
T Consensus 494 d~~~~~~~~d 503 (530)
T PRK15064 494 DREFVSSLAT 503 (530)
T ss_pred CHHHHHHhCC
Confidence 5554444444
No 295
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.83 E-value=1.6e-20 Score=150.02 Aligned_cols=106 Identities=18% Similarity=0.120 Sum_probs=80.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~ 82 (247)
.+++|+||||||||||+++|+|+++|++|+|+++|. ..+.|.+. ++
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----~~i~~~~~------------------------------lS 72 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----VKIGYFEQ------------------------------LS 72 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----EEEEEEcc------------------------------CC
Confidence 478999999999999999999999999999999873 23334111 22
Q ss_pred hh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 83 DN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 83 ~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
.+ +++.||++++. +|+++|+|||++ ||+.++..+. ++++++ +.+++++ +|...+...+++
T Consensus 73 ~G~~~rv~laral~~--~p~illlDEP~~~LD~~~~~~l~-~~l~~~---~~til~~----th~~~~~~~~~d 135 (144)
T cd03221 73 GGEKMRLALAKLLLE--NPNLLLLDEPTNHLDLESIEALE-EALKEY---PGTVILV----SHDRYFLDQVAT 135 (144)
T ss_pred HHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHc---CCEEEEE----ECCHHHHHHhCC
Confidence 22 34899999999 999999999999 9999998887 777766 3466555 354444444433
No 296
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.83 E-value=2e-20 Score=178.17 Aligned_cols=130 Identities=20% Similarity=0.216 Sum_probs=95.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC-Cc-----ccChhhhHh----------HH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-PV-----AMDIRELIS----------LE 60 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y-~~-----~~~v~e~i~----------~~ 60 (247)
-.++|+||+|||||||++.|+|+++|++|+|.++|.|... +.++| +| +-|++||+. +.
T Consensus 362 ~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~ 441 (529)
T TIGR02868 362 ERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELW 441 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHH
Confidence 3589999999999999999999999999999999977642 23444 22 348888886 44
Q ss_pred HHHHHcCCCC------CCchhh---hHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844 61 DVMEELGLGP------NGGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (247)
Q Consensus 61 ~~l~~~~L~~------~~~~~~---~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (247)
++++..++.. .|-... .-..+++|+ |.+||||+.. +|+++||||||+ ||..+.+.+. +.++++ .
T Consensus 442 ~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~--~~~iliLDE~TSaLD~~te~~I~-~~l~~~-~ 517 (529)
T TIGR02868 442 AALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLA--DAPILLLDEPTEHLDAGTESELL-EDLLAA-L 517 (529)
T ss_pred HHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHh-c
Confidence 5666555532 110000 002355554 4899999999 999999999999 9999998888 666665 3
Q ss_pred CCCeEEEE
Q 025844 129 RNFNVCAV 136 (247)
Q Consensus 129 ~~~~ii~v 136 (247)
.++|+++|
T Consensus 518 ~~~TvIiI 525 (529)
T TIGR02868 518 SGKTVVVI 525 (529)
T ss_pred CCCEEEEE
Confidence 46777666
No 297
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.83 E-value=1.6e-20 Score=179.58 Aligned_cols=128 Identities=24% Similarity=0.319 Sum_probs=92.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh------------
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS------------ 58 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~------------ 58 (247)
.++|+||||||||||+++++|+++|++|+|.++|.+... +.+.| ++ +-|++|++.
T Consensus 346 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~ 425 (544)
T TIGR01842 346 ALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKII 425 (544)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHH
Confidence 689999999999999999999999999999999976532 12232 11 236777764
Q ss_pred -------HHHHHHHc--CCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844 59 -------LEDVMEEL--GLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (247)
Q Consensus 59 -------~~~~l~~~--~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (247)
+++.++.+ |+....+.. -..+++|+ +++|||++.. +|+++|+||||+ ||+.+...+. +.++++
T Consensus 426 ~~~~~~~~~~~i~~l~~gl~t~~~~~--g~~LSgGq~qrl~lARall~--~~~ililDEpts~LD~~~~~~i~-~~l~~~ 500 (544)
T TIGR01842 426 EAAKLAGVHELILRLPDGYDTVIGPG--GATLSGGQRQRIALARALYG--DPKLVVLDEPNSNLDEEGEQALA-NAIKAL 500 (544)
T ss_pred HHHHHhChHHHHHhCccccccccCCC--cCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccccCHHHHHHHH-HHHHHH
Confidence 22333333 222211111 12355554 4899999999 999999999999 9999999988 777777
Q ss_pred HhCCCeEEEE
Q 025844 127 KSRNFNVCAV 136 (247)
Q Consensus 127 ~~~~~~ii~v 136 (247)
...+.+++++
T Consensus 501 ~~~~~tvi~i 510 (544)
T TIGR01842 501 KARGITVVVI 510 (544)
T ss_pred hhCCCEEEEE
Confidence 5456777666
No 298
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=5.9e-20 Score=163.90 Aligned_cols=142 Identities=20% Similarity=0.279 Sum_probs=96.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc-----CCCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhHhH---
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELISL--- 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~g~d~~~---------~~~~y-~~-----~~~v~e~i~~--- 59 (247)
-+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..++| ++ ..++++++..
T Consensus 72 e~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~ 151 (305)
T PRK14264 72 SVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPR 151 (305)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCccccccHHHHHHhHHh
Confidence 3689999999999999999999986 689999999876431 12333 11 1256655542
Q ss_pred --------------------------HHHHHHcCCCCCC--chhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc
Q 025844 60 --------------------------EDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ 109 (247)
Q Consensus 60 --------------------------~~~l~~~~L~~~~--~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~ 109 (247)
.++++.+++.+.. ........+++|+ ++.||++++. +|++||+|||++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~--~p~lLLLDEPts 229 (305)
T PRK14264 152 KHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAV--DPEVILMDEPAS 229 (305)
T ss_pred hcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcc
Confidence 2334445542100 0000113455554 3899999999 999999999999
Q ss_pred -ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 110 -IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 110 -LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
||+.++..+. ++++++++ +.+++++ +|.......+++
T Consensus 230 gLD~~~~~~l~-~~L~~~~~-~~tiiiv----tH~~~~i~~~~d 267 (305)
T PRK14264 230 ALDPIATSKIE-DLIEELAE-EYTVVVV----THNMQQAARISD 267 (305)
T ss_pred cCCHHHHHHHH-HHHHHHhc-CCEEEEE----EcCHHHHHHhcC
Confidence 9999999988 88888866 4666555 455554444444
No 299
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.83 E-value=7.7e-21 Score=186.29 Aligned_cols=128 Identities=20% Similarity=0.154 Sum_probs=93.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh---------HH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE 60 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~---------~~ 60 (247)
-.++|+||||||||||+|+|+|+++|++|+|.++|.|... +.++| +| +-|++||+. +.
T Consensus 480 e~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~ 559 (686)
T TIGR03797 480 EFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAW 559 (686)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHH
Confidence 3589999999999999999999999999999999987643 34444 22 337888885 34
Q ss_pred HHHHHcCCCC------CCchh---hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844 61 DVMEELGLGP------NGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (247)
Q Consensus 61 ~~l~~~~L~~------~~~~~---~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (247)
++++..++.+ .|-.. ..-..+++|+ +.+||||+.. +|+++||||||+ ||+.+.+.+. +.++++
T Consensus 560 ~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~--~p~iLiLDEpTS~LD~~te~~i~-~~L~~~-- 634 (686)
T TIGR03797 560 EAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVR--KPRILLFDEATSALDNRTQAIVS-ESLERL-- 634 (686)
T ss_pred HHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHh--
Confidence 5555555432 11000 0002355554 4899999999 999999999999 9999998887 555554
Q ss_pred CCCeEEEE
Q 025844 129 RNFNVCAV 136 (247)
Q Consensus 129 ~~~~ii~v 136 (247)
+.|+++|
T Consensus 635 -~~T~IiI 641 (686)
T TIGR03797 635 -KVTRIVI 641 (686)
T ss_pred -CCeEEEE
Confidence 4566655
No 300
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.83 E-value=5.7e-20 Score=173.66 Aligned_cols=129 Identities=20% Similarity=0.287 Sum_probs=95.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC-CCceEEEeccCCC--------CCCCCC-Cc--------ccChhhhH-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPA--------AENFDY-PV--------AMDIRELI------- 57 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-~~G~v~i~g~d~~--------~~~~~y-~~--------~~~v~e~i------- 57 (247)
-+++|+||||||||||+++|+|+.++ ++|+|+++|.+.. ...++| ++ ..++++++
T Consensus 287 e~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~ 366 (490)
T PRK10938 287 EHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDS 366 (490)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccc
Confidence 37899999999999999999998875 6999999986531 112333 11 11233221
Q ss_pred -------------hHHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844 58 -------------SLEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (247)
Q Consensus 58 -------------~~~~~l~~~~L~~-~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (247)
.++++++.+++.+ ..... ...+++|++ ++||++++. +|+++|+||||+ ||+.++..+.
T Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGq~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~- 441 (490)
T PRK10938 367 IGIYQAVSDRQQKLAQQWLDILGIDKRTADAP--FHSLSWGQQRLALIVRALVK--HPTLLILDEPLQGLDPLNRQLVR- 441 (490)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCchhhccCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHH-
Confidence 2467888899875 33332 345777654 899999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCC-eEEEE
Q 025844 121 NFVDHLKSRNF-NVCAV 136 (247)
Q Consensus 121 ~ll~~l~~~~~-~ii~v 136 (247)
++++++++++. +++++
T Consensus 442 ~~L~~l~~~~~~tviiv 458 (490)
T PRK10938 442 RFVDVLISEGETQLLFV 458 (490)
T ss_pred HHHHHHHhcCCcEEEEE
Confidence 99999876654 46555
No 301
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.83 E-value=1.4e-20 Score=169.26 Aligned_cols=161 Identities=19% Similarity=0.267 Sum_probs=124.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------------CCCCC---CcccChhhhHh------
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------------ENFDY---PVAMDIRELIS------ 58 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------------~~~~y---~~~~~v~e~i~------ 58 (247)
.++|+|.+|||||||-++|.+++++. |.|++.|.+... -.-|| .|.++|.+.|.
T Consensus 315 TlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh 393 (534)
T COG4172 315 TLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVH 393 (534)
T ss_pred eEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhc
Confidence 57999999999999999999999987 999999987642 01133 56778888775
Q ss_pred ------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 025844 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (247)
Q Consensus 59 ------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (247)
+.++|+++||.|+.--.|+ +.+++|++ .+||||++. +|++++|||||+ ||...+.+++ +++
T Consensus 394 ~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYP-hEFSGGQRQRIAIARAliL--kP~~i~LDEPTSALD~SVQaQvv-~LL 469 (534)
T COG4172 394 EPKLSAAERDQRVIEALEEVGLDPATRNRYP-HEFSGGQRQRIAIARALIL--KPELILLDEPTSALDRSVQAQVL-DLL 469 (534)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCChhHhhcCC-cccCcchhhHHHHHHHHhc--CCcEEEecCCchHhhHHHHHHHH-HHH
Confidence 7899999999998776776 45777765 899999999 999999999999 9999999999 999
Q ss_pred HHHHh-CCCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccchhhhhhhcc
Q 025844 124 DHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLN 189 (247)
Q Consensus 124 ~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~~~~~~~~~ 189 (247)
+.|.+ .|.+-+++ +|.+.-....|. .+-|+-....+++. .-+.+++
T Consensus 470 r~LQ~k~~LsYLFI----SHDL~VvrAl~~---------------~viVm~~GkiVE~G-~~~~if~ 516 (534)
T COG4172 470 RDLQQKHGLSYLFI----SHDLAVVRALCH---------------RVIVMRDGKIVEQG-PTEAVFA 516 (534)
T ss_pred HHHHHHhCCeEEEE----eccHHHHHHhhc---------------eEEEEeCCEEeeeC-CHHHHhc
Confidence 99975 36554444 566553444333 45567667677665 4444444
No 302
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.83 E-value=5.5e-20 Score=176.18 Aligned_cols=137 Identities=18% Similarity=0.148 Sum_probs=98.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC--C--CCCC-CCCcccChhhhHh--------------HHHHH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--A--AENF-DYPVAMDIRELIS--------------LEDVM 63 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~--~--~~~~-~y~~~~~v~e~i~--------------~~~~l 63 (247)
-+++|+||||||||||+++|+|+++|++|+|++.+ +. + .+.. .+.+..++.+++. .++++
T Consensus 349 e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l 427 (552)
T TIGR03719 349 GIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYV 427 (552)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ceEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHH
Confidence 47899999999999999999999999999999843 21 0 1221 1234456666553 34678
Q ss_pred HHcCCCC-CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEec
Q 025844 64 EELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLL 139 (247)
Q Consensus 64 ~~~~L~~-~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~ 139 (247)
+.+++.. ..... ...+++|++ ++||++++. +|+++||||||+ ||+.++..+. ++++++. + +++++
T Consensus 428 ~~~~l~~~~~~~~--~~~LSgGe~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~--~-~viiv--- 496 (552)
T TIGR03719 428 GRFNFKGSDQQKK--VGQLSGGERNRVHLAKTLKS--GGNVLLLDEPTNDLDVETLRALE-EALLEFA--G-CAVVI--- 496 (552)
T ss_pred HhCCCChhHhcCc--hhhCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHCC--C-eEEEE---
Confidence 8888853 22222 345777654 899999999 999999999999 9999998888 7777762 3 56544
Q ss_pred ccccccchhHHhh
Q 025844 140 DSQFITDVTKFIS 152 (247)
Q Consensus 140 d~~~~~d~~~~~s 152 (247)
+|.......+++
T Consensus 497 -sHd~~~~~~~~d 508 (552)
T TIGR03719 497 -SHDRWFLDRIAT 508 (552)
T ss_pred -eCCHHHHHHhCC
Confidence 465554555544
No 303
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.83 E-value=1.5e-19 Score=159.57 Aligned_cols=130 Identities=18% Similarity=0.104 Sum_probs=86.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC-CCCCCCCCCcccChhhhHh---------HHHHHHHcCCCCCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEELGLGPNG 72 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d-~~~~~~~y~~~~~v~e~i~---------~~~~l~~~~L~~~~ 72 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.- ...+...+.+ .++++++. +.+.++.+++.+..
T Consensus 64 e~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~-~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l 142 (282)
T cd03291 64 EMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMP-GTIKENIIFGVSYDEYRYKSVVKACQLEEDI 142 (282)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccc-cCHHHHhhcccccCHHHHHHHHHHhCCHHHH
Confidence 3689999999999999999999999999999987621 0111111122 26666643 13334444442210
Q ss_pred ch---------hhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 73 GL---------IYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 73 ~~---------~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
.. ......++.|+ ++.||++++. +|+++|+|||++ ||+.++..+.+.+++.++ .+.+++++
T Consensus 143 ~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~--~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiii 215 (282)
T cd03291 143 TKFPEKDNTVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILV 215 (282)
T ss_pred HhccccccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEE
Confidence 00 00012455554 3899999999 999999999999 999999888733556664 46677655
No 304
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.83 E-value=7.4e-20 Score=175.48 Aligned_cols=137 Identities=18% Similarity=0.098 Sum_probs=94.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC-C--CCCCCCCCcccChhhhHh---------------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-P--AAENFDYPVAMDIRELIS--------------------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d-~--~~~~~~y~~~~~v~e~i~--------------------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.+.+.. . -.+...+.+.+++.+++.
T Consensus 34 e~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~ 113 (556)
T PRK11819 34 AKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYA 113 (556)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 3689999999999999999999999999999986421 1 112222233456666553
Q ss_pred -------------------------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEe
Q 025844 59 -------------------------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFD 105 (247)
Q Consensus 59 -------------------------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilD 105 (247)
+.++++.+|+.. ... ....+++|++ +.||++++. +|+++|||
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~--~~~~LSgGqkqrv~la~al~~--~p~vlLLD 188 (556)
T PRK11819 114 EPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WDA--KVTKLSGGERRRVALCRLLLE--KPDMLLLD 188 (556)
T ss_pred cCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-ccC--chhhcCHHHHHHHHHHHHHhC--CCCEEEEc
Confidence 223445556632 222 2356777654 899999999 99999999
Q ss_pred CCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 106 CPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 106 EPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
|||+ ||+.+...+. ++++++ +.+++++ +|.......+++
T Consensus 189 EPt~~LD~~~~~~l~-~~L~~~---~~tviii----sHd~~~~~~~~d 228 (556)
T PRK11819 189 EPTNHLDAESVAWLE-QFLHDY---PGTVVAV----THDRYFLDNVAG 228 (556)
T ss_pred CCCCcCChHHHHHHH-HHHHhC---CCeEEEE----eCCHHHHHhhcC
Confidence 9999 9999998877 777765 2366555 455554445444
No 305
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.83 E-value=5.9e-20 Score=176.12 Aligned_cols=137 Identities=16% Similarity=0.127 Sum_probs=98.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC----CCCCC-CCCcccChhhhHh--------------HHHHH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP----AAENF-DYPVAMDIRELIS--------------LEDVM 63 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~----~~~~~-~y~~~~~v~e~i~--------------~~~~l 63 (247)
-+++|+||||||||||+++|+|+++|++|+|.+.+ +. ..+.. .+.+..++.+++. .++++
T Consensus 351 e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l 429 (556)
T PRK11819 351 GIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYV 429 (556)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ceEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHH
Confidence 47899999999999999999999999999999843 21 11222 2334556776653 34578
Q ss_pred HHcCCCCC-CchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEec
Q 025844 64 EELGLGPN-GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLL 139 (247)
Q Consensus 64 ~~~~L~~~-~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~ 139 (247)
+.+++.+. .... ...+++|++ ++||++++. +|+++||||||+ ||+.++..+. ++++.+. + +++++
T Consensus 430 ~~~~l~~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~--~-tvi~v--- 498 (556)
T PRK11819 430 GRFNFKGGDQQKK--VGVLSGGERNRLHLAKTLKQ--GGNVLLLDEPTNDLDVETLRALE-EALLEFP--G-CAVVI--- 498 (556)
T ss_pred HhCCCChhHhcCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHhCC--C-eEEEE---
Confidence 88888532 1222 345777654 899999999 999999999999 9999998888 7777762 3 55544
Q ss_pred ccccccchhHHhh
Q 025844 140 DSQFITDVTKFIS 152 (247)
Q Consensus 140 d~~~~~d~~~~~s 152 (247)
+|.......+++
T Consensus 499 -tHd~~~~~~~~d 510 (556)
T PRK11819 499 -SHDRWFLDRIAT 510 (556)
T ss_pred -ECCHHHHHHhCC
Confidence 465555555544
No 306
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.83 E-value=2.6e-19 Score=143.72 Aligned_cols=128 Identities=19% Similarity=0.284 Sum_probs=101.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC------C--------------CCCCCCcccChhhhHh-----
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA------A--------------ENFDYPVAMDIRELIS----- 58 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~------~--------------~~~~y~~~~~v~e~i~----- 58 (247)
.+.++||+|+|||||+|.+.=+.-|.+|+..+-|.... + +.....|.++|-+++-
T Consensus 30 tlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~k 109 (242)
T COG4161 30 TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCR 109 (242)
T ss_pred EEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHH
Confidence 46899999999999999999999999999999875321 1 1122256677776652
Q ss_pred ------------HHHHHHHcCCCCCCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 025844 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (247)
Q Consensus 59 ------------~~~~l~~~~L~~~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (247)
..++++++.|.+..++. ++ .+++| ++++||||+++ +|++++|||||+ |||....++. .++
T Consensus 110 v~gl~~~qa~~~a~ellkrlrl~~~adr~-pl-hlsggqqqrvaiaralmm--kpqvllfdeptaaldpeitaqvv-~ii 184 (242)
T COG4161 110 VLGLSKDQALARAEKLLKRLRLKPYADRY-PL-HLSGGQQQRVAIARALMM--EPQVLLFDEPTAALDPEITAQIV-SII 184 (242)
T ss_pred HhCCCHHHHHHHHHHHHHHhccccccccC-ce-ecccchhhhHHHHHHHhc--CCcEEeecCcccccCHHHHHHHH-HHH
Confidence 57788888888876543 33 24444 35999999999 999999999999 9999999999 999
Q ss_pred HHHHhCCCeEEEE
Q 025844 124 DHLKSRNFNVCAV 136 (247)
Q Consensus 124 ~~l~~~~~~ii~v 136 (247)
++|...|.+-++|
T Consensus 185 kel~~tgitqviv 197 (242)
T COG4161 185 KELAETGITQVIV 197 (242)
T ss_pred HHHHhcCceEEEE
Confidence 9998889886555
No 307
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.82 E-value=3.5e-20 Score=178.74 Aligned_cols=130 Identities=16% Similarity=0.120 Sum_probs=95.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh---------HH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE 60 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~---------~~ 60 (247)
-.++|+|+||||||||+++|+|+++|++|+|.++|.+... +.++| +| +-|+++|+. +.
T Consensus 368 e~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~ 447 (592)
T PRK10790 368 GFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVW 447 (592)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHH
Confidence 3589999999999999999999999999999999987542 33444 22 337888875 45
Q ss_pred HHHHHcCCCC------CCchh---hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844 61 DVMEELGLGP------NGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (247)
Q Consensus 61 ~~l~~~~L~~------~~~~~---~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (247)
++++..|+.. +|-.. ..-..+++|+ +.+|||+++. +|+++||||||+ ||+.+.+.+. +.++++.+
T Consensus 448 ~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~--~~~illlDEpts~LD~~t~~~i~-~~l~~~~~ 524 (592)
T PRK10790 448 QALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQ--TPQILILDEATANIDSGTEQAIQ-QALAAVRE 524 (592)
T ss_pred HHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHhC
Confidence 5666655431 11000 0012355554 4899999999 999999999999 9999998888 77777644
Q ss_pred CCCeEEEE
Q 025844 129 RNFNVCAV 136 (247)
Q Consensus 129 ~~~~ii~v 136 (247)
++++++|
T Consensus 525 -~~tvIiv 531 (592)
T PRK10790 525 -HTTLVVI 531 (592)
T ss_pred -CCEEEEE
Confidence 5677665
No 308
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=4.9e-20 Score=148.77 Aligned_cols=120 Identities=23% Similarity=0.236 Sum_probs=85.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~ 82 (247)
.+++|+||||||||||+++|+|.++|.+|+++++|.+..... ..++....++-+. ++
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~--------------~~~~~~~i~~~~q---------lS 82 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLP--------------LEELRRRIGYVPQ---------LS 82 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCC--------------HHHHHhceEEEee---------CC
Confidence 478999999999999999999999999999999986543210 0001111111110 33
Q ss_pred hh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 83 DN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 83 ~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
.| .++.++++++. +|+++++|||++ +|+.++..+. ++++++.+.+.+++++ +|...+...+++
T Consensus 83 ~G~~~r~~l~~~l~~--~~~i~ilDEp~~~lD~~~~~~l~-~~l~~~~~~~~tii~~----sh~~~~~~~~~d 148 (157)
T cd00267 83 GGQRQRVALARALLL--NPDLLLLDEPTSGLDPASRERLL-ELLRELAEEGRTVIIV----THDPELAELAAD 148 (157)
T ss_pred HHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEE----eCCHHHHHHhCC
Confidence 33 34889999999 999999999999 9999998888 8888876656677555 455554444433
No 309
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.82 E-value=6.7e-20 Score=176.63 Aligned_cols=129 Identities=16% Similarity=0.216 Sum_probs=93.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh----------H
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------~ 59 (247)
-.++|+||+|||||||++.|+|++ |++|+|.++|.|... +.++| +| +-|++||+. +
T Consensus 377 ~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei 455 (588)
T PRK11174 377 QRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQL 455 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHH
Confidence 358999999999999999999999 899999999987642 23444 22 347888885 3
Q ss_pred HHHHHHcCCCC------CCchhh---hHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844 60 EDVMEELGLGP------NGGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (247)
Q Consensus 60 ~~~l~~~~L~~------~~~~~~---~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (247)
.++++..++.+ +|-... .-..+++|+ |.+||||+.. +|+++||||||+ ||..+.+.+. +.++++.
T Consensus 456 ~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~--~~~IliLDE~TSaLD~~te~~i~-~~l~~~~ 532 (588)
T PRK11174 456 QQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQ--PCQLLLLDEPTASLDAHSEQLVM-QALNAAS 532 (588)
T ss_pred HHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHh
Confidence 34444433321 110000 002355554 4899999999 999999999999 9999999988 7777774
Q ss_pred hCCCeEEEE
Q 025844 128 SRNFNVCAV 136 (247)
Q Consensus 128 ~~~~~ii~v 136 (247)
.++|+++|
T Consensus 533 -~~~TvIiI 540 (588)
T PRK11174 533 -RRQTTLMV 540 (588)
T ss_pred -CCCEEEEE
Confidence 46777666
No 310
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.82 E-value=1.5e-19 Score=173.55 Aligned_cols=128 Identities=21% Similarity=0.258 Sum_probs=91.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh----------H
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------~ 59 (247)
-.++|+||+||||||+++.|.++++|++|+|.++|.|... +.++| +| +-|+++|+. +
T Consensus 356 e~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei 435 (567)
T COG1132 356 EKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEI 435 (567)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHH
Confidence 3579999999999999999999999999999999987643 33444 22 347888886 2
Q ss_pred HHHHH---------Hc--CCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 60 EDVME---------EL--GLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 60 ~~~l~---------~~--~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
.++++ .+ |+...-+.. -..+++|+ +.+|||++.. +|+++||||||+ +|..+...+. +.++.
T Consensus 436 ~~a~k~a~~~d~I~~lp~g~dt~vge~--G~~LSgGQrQrlaiARall~--~~~ILILDEaTSalD~~tE~~I~-~~l~~ 510 (567)
T COG1132 436 EEALKLANAHEFIANLPDGYDTIVGER--GVNLSGGQRQRLAIARALLR--NPPILILDEATSALDTETEALIQ-DALKK 510 (567)
T ss_pred HHHHHHhChHHHHHhCcccccceecCC--CccCCHHHHHHHHHHHHHhc--CCCEEEEeccccccCHHhHHHHH-HHHHH
Confidence 23333 32 222111100 02355554 4899999999 999999999999 9999998888 77776
Q ss_pred HHhCCCeEEEE
Q 025844 126 LKSRNFNVCAV 136 (247)
Q Consensus 126 l~~~~~~ii~v 136 (247)
+. +++|+++|
T Consensus 511 l~-~~rT~iiI 520 (567)
T COG1132 511 LL-KGRTTLII 520 (567)
T ss_pred Hh-cCCEEEEE
Confidence 65 45565554
No 311
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.82 E-value=1.3e-19 Score=173.72 Aligned_cols=137 Identities=17% Similarity=0.066 Sum_probs=92.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC-C--CCCCCCCCcccChhhhHhH--------------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-P--AAENFDYPVAMDIRELISL-------------------- 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d-~--~~~~~~y~~~~~v~e~i~~-------------------- 59 (247)
-+++|+||||||||||+++|+|+++|++|+|.+.+.. + ..+.....+++|+.+++..
T Consensus 32 e~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
T TIGR03719 32 AKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFA 111 (552)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 3689999999999999999999999999999986421 1 0122222334566666531
Q ss_pred --------------------------------HHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEe
Q 025844 60 --------------------------------EDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFD 105 (247)
Q Consensus 60 --------------------------------~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilD 105 (247)
.++++.+++.. ... ....+++|++ ++||++++. +|+++|||
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~--~~~~LSgGqkqrv~la~al~~--~p~lLLLD 186 (552)
T TIGR03719 112 EPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WDA--DVTKLSGGERRRVALCRLLLS--KPDMLLLD 186 (552)
T ss_pred cCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-ccC--chhhcCHHHHHHHHHHHHHhc--CCCEEEEc
Confidence 12334445532 111 2345777654 899999999 99999999
Q ss_pred CCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 106 CPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 106 EPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
|||+ ||+.++..+. ++++++ +.++|+| +|.......+++
T Consensus 187 EPt~~LD~~~~~~l~-~~L~~~---~~tvIii----sHd~~~~~~~~d 226 (552)
T TIGR03719 187 EPTNHLDAESVAWLE-QHLQEY---PGTVVAV----THDRYFLDNVAG 226 (552)
T ss_pred CCCCCCChHHHHHHH-HHHHhC---CCeEEEE----eCCHHHHHhhcC
Confidence 9999 9999998877 766654 3466555 354444444433
No 312
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.82 E-value=6.5e-20 Score=174.67 Aligned_cols=130 Identities=22% Similarity=0.249 Sum_probs=95.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC------CcccChhhhHh----------H
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y------~~~~~v~e~i~----------~ 59 (247)
-.++|+||||||||||+++|+|+++|++|+|.++|.+... +.++| -.+-|++||+. +
T Consensus 349 ~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i 428 (529)
T TIGR02857 349 ERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEI 428 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHH
Confidence 3689999999999999999999999999999999987542 22333 22458888875 4
Q ss_pred HHHHHHcCCCC------CCchhh---hHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844 60 EDVMEELGLGP------NGGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (247)
Q Consensus 60 ~~~l~~~~L~~------~~~~~~---~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (247)
.++++..++.+ +|-... .-..+++|+ +.++||++.. +|+++|+||||+ +|+.+.+.+. +.++++.
T Consensus 429 ~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~--~~~ililDE~ts~lD~~~~~~i~-~~l~~~~ 505 (529)
T TIGR02857 429 RRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLR--DAPLLLLDEPTAHLDAETEALVT-EALRALA 505 (529)
T ss_pred HHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHH-HHHHHhc
Confidence 45566655532 110000 012355554 4899999999 999999999999 9999999988 7777764
Q ss_pred hCCCeEEEE
Q 025844 128 SRNFNVCAV 136 (247)
Q Consensus 128 ~~~~~ii~v 136 (247)
.+.|+++|
T Consensus 506 -~~~t~i~i 513 (529)
T TIGR02857 506 -QGRTVLLV 513 (529)
T ss_pred -CCCEEEEE
Confidence 46777666
No 313
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=9e-20 Score=170.62 Aligned_cols=129 Identities=21% Similarity=0.241 Sum_probs=97.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC------CcccChhhhHh----------HH
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------LE 60 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y------~~~~~v~e~i~----------~~ 60 (247)
.++|+|+||||||||++.|+|+++|++|+|.++|.+... +++.| -..-|++||+. +.
T Consensus 349 ~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~ 428 (559)
T COG4988 349 LTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEII 428 (559)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHH
Confidence 579999999999999999999999999999999987643 22333 23448999985 66
Q ss_pred HHHHHcCCCCCCc----hhhhH----Hhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 025844 61 DVMEELGLGPNGG----LIYCM----EHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (247)
Q Consensus 61 ~~l~~~~L~~~~~----~~~~~----~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (247)
+++++.++.+.-. .-... ..++.| +|+++|||+.. +++++|+||||+ ||..+.+.+. +.+.++.+.
T Consensus 429 ~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~--~~~l~llDEpTA~LD~etE~~i~-~~l~~l~~~ 505 (559)
T COG4988 429 AALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLS--PASLLLLDEPTAHLDAETEQIIL-QALQELAKQ 505 (559)
T ss_pred HHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcC--CCCEEEecCCccCCCHhHHHHHH-HHHHHHHhC
Confidence 6777766543211 11111 124444 35999999999 999999999999 9999988888 888888654
Q ss_pred CCeEEEE
Q 025844 130 NFNVCAV 136 (247)
Q Consensus 130 ~~~ii~v 136 (247)
++++++
T Consensus 506 -ktvl~i 511 (559)
T COG4988 506 -KTVLVI 511 (559)
T ss_pred -CeEEEE
Confidence 677666
No 314
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.82 E-value=1.6e-20 Score=184.68 Aligned_cols=127 Identities=14% Similarity=0.118 Sum_probs=91.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh----------HH
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------~~ 60 (247)
.++|+||||||||||+++|+|+++|++|+|.++|.|... +.++| +| +-|++||+. +.
T Consensus 507 ~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~ 586 (710)
T TIGR03796 507 RVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLV 586 (710)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHH
Confidence 589999999999999999999999999999999987632 33444 22 347888885 34
Q ss_pred HHHHHcCCCC------CCchh---hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844 61 DVMEELGLGP------NGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (247)
Q Consensus 61 ~~l~~~~L~~------~~~~~---~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (247)
++++..++.+ .|-.. ..-..+++|+ +++|||++.. +|+++||||||+ ||..+.+.+. +.+++
T Consensus 587 ~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~--~p~iliLDEptS~LD~~te~~i~-~~l~~--- 660 (710)
T TIGR03796 587 RACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVR--NPSILILDEATSALDPETEKIID-DNLRR--- 660 (710)
T ss_pred HHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhh--CCCEEEEECccccCCHHHHHHHH-HHHHh---
Confidence 4555554432 11000 0002355554 4899999999 999999999999 9999998887 44443
Q ss_pred CCCeEEEE
Q 025844 129 RNFNVCAV 136 (247)
Q Consensus 129 ~~~~ii~v 136 (247)
.+.|+++|
T Consensus 661 ~~~T~Iii 668 (710)
T TIGR03796 661 RGCTCIIV 668 (710)
T ss_pred cCCEEEEE
Confidence 46777666
No 315
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.82 E-value=6.3e-20 Score=177.91 Aligned_cols=148 Identities=18% Similarity=0.231 Sum_probs=109.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCC---CceEEEeccCCCC----CCCCC-------CcccChhhhHh----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS---------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~---~G~v~i~g~d~~~----~~~~y-------~~~~~v~e~i~---------- 58 (247)
-+++|+||||||||||+++|+|..++. +|+|.++|.+... +.++| .+.+||+|++.
T Consensus 52 e~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 131 (617)
T TIGR00955 52 ELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRR 131 (617)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCC
Confidence 368999999999999999999998875 7999999976531 12333 34668888774
Q ss_pred ---------HHHHHHHcCCCCCCchhhhH----HhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 025844 59 ---------LEDVMEELGLGPNGGLIYCM----EHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (247)
Q Consensus 59 ---------~~~~l~~~~L~~~~~~~~~~----~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (247)
++++++.+|+.+..+....- ..+++|+ ++.||++++. +|+++++||||+ ||..+...++ +.
T Consensus 132 ~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~--~p~vlllDEPtsgLD~~~~~~l~-~~ 208 (617)
T TIGR00955 132 VTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLT--DPPLLFCDEPTSGLDSFMAYSVV-QV 208 (617)
T ss_pred CCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHc--CCCEEEeeCCCcchhHHHHHHHH-HH
Confidence 67788899987644333221 1355554 4999999999 999999999999 9999999999 88
Q ss_pred HHHHHhCCCeEEEEEeccccccc-chhHHhhhhHHH
Q 025844 123 VDHLKSRNFNVCAVYLLDSQFIT-DVTKFISGCMAS 157 (247)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~-d~~~~~s~~l~~ 157 (247)
++++++.|.+++++ +|... +....++.+++.
T Consensus 209 L~~l~~~g~tvi~~----~hq~~~~i~~~~D~i~ll 240 (617)
T TIGR00955 209 LKGLAQKGKTIICT----IHQPSSELFELFDKIILM 240 (617)
T ss_pred HHHHHhCCCEEEEE----eCCCCHHHHHHhceEEEe
Confidence 88987778887655 24432 334455544333
No 316
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.82 E-value=1.4e-19 Score=176.34 Aligned_cols=150 Identities=18% Similarity=0.224 Sum_probs=108.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhHh------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------~~~~y-------~~~~~v~e~i~------ 58 (247)
-+++|+||||||||||+++|+|+++|++|++.++|.++.. +.+.| .+..++.|++.
T Consensus 35 e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~ 114 (648)
T PRK10535 35 EMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA 114 (648)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc
Confidence 3689999999999999999999999999999999976431 12333 23446666553
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
+.++++.+++.+..... ...++.++ ++.||++++. +|+++|+|||+. ||+.+++.+. +++++
T Consensus 115 ~~~~~~~~~~~~~~l~~lgl~~~~~~~--~~~LS~Gq~qrv~LAraL~~--~P~lLllDEP~~gLD~~s~~~l~-~ll~~ 189 (648)
T PRK10535 115 GLERKQRLLRAQELLQRLGLEDRVEYQ--PSQLSGGQQQRVSIARALMN--GGQVILADEPTGALDSHSGEEVM-AILHQ 189 (648)
T ss_pred CCCHHHHHHHHHHHHHHCCChhhhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HHHHH
Confidence 45677788886543222 23455554 3899999999 999999999999 9999999998 88999
Q ss_pred HHhCCCeEEEEEecccccccchhHHhhhhHHHhHHHh
Q 025844 126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (247)
Q Consensus 126 l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~ 162 (247)
+++++.+++++ +|....+ ..++..+....+.+
T Consensus 190 l~~~g~tiliv----sH~~~~~-~~~d~i~~l~~G~i 221 (648)
T PRK10535 190 LRDRGHTVIIV----THDPQVA-AQAERVIEIRDGEI 221 (648)
T ss_pred HHhcCCEEEEE----CCCHHHH-HhCCEEEEEECCEE
Confidence 87667887666 3444433 23555544433333
No 317
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.82 E-value=2e-19 Score=148.44 Aligned_cols=116 Identities=20% Similarity=0.241 Sum_probs=87.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--CCCCCCcccChhhhHhHHHHHHHcCCCCC-CchhhhHH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDYPVAMDIRELISLEDVMEELGLGPN-GGLIYCME 79 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--~~~~y~~~~~v~e~i~~~~~l~~~~L~~~-~~~~~~~~ 79 (247)
-+++|+||||||||||++++.+ ++|++.+.+..+.. ..+.|. .+ .++++.+++++. .... ..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~~~~~~~~~-----~q----~~~l~~~~L~~~~~~~~--~~ 86 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKFSRNKLIFI-----DQ----LQFLIDVGLGYLTLGQK--LS 86 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccccccccEEEE-----hH----HHHHHHcCCCccccCCC--cC
Confidence 3689999999999999999853 68999988764321 112231 11 578899998753 2222 23
Q ss_pred hhhhhH--HHHHHHHhhcCCC--CCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 80 HLEDNL--DDWLAEELDNYLD--DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 80 ~l~~~~--~~~la~al~~~~~--p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
.++.++ ++.+|++++. + |+++|+|||++ ||+.++..+. +.++++++.|.+++++
T Consensus 87 ~LSgGq~qrl~laral~~--~~~p~llLlDEPt~~LD~~~~~~l~-~~l~~~~~~g~tvIiv 145 (176)
T cd03238 87 TLSGGELQRVKLASELFS--EPPGTLFILDEPSTGLHQQDINQLL-EVIKGLIDLGNTVILI 145 (176)
T ss_pred cCCHHHHHHHHHHHHHhh--CCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 455554 4899999999 9 99999999999 9999999998 8888886678888766
No 318
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=8.7e-20 Score=177.47 Aligned_cols=126 Identities=15% Similarity=0.156 Sum_probs=90.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEec-cCCC--CCCC-C-CCcccChhhhH----------hHHHHHHHcC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN-LDPA--AENF-D-YPVAMDIRELI----------SLEDVMEELG 67 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g-~d~~--~~~~-~-y~~~~~v~e~i----------~~~~~l~~~~ 67 (247)
-+++|+||||||||||+++|+|.++|++|+|.+.+ ..++ .+.. . ..+..++.+.+ .+.++++.++
T Consensus 339 e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 418 (638)
T PRK10636 339 SRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFG 418 (638)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcC
Confidence 37899999999999999999999999999999853 1111 1110 1 12222343332 2567888999
Q ss_pred CCCC-CchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 68 LGPN-GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 68 L~~~-~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
+.+. .... ...+++|.+ ++||++++. +|++|||||||+ ||+.++..+. ++++.+ .| +||+|
T Consensus 419 l~~~~~~~~--~~~LSgGekqRl~La~~l~~--~p~lLlLDEPt~~LD~~~~~~l~-~~L~~~--~g-tvi~v 483 (638)
T PRK10636 419 FQGDKVTEE--TRRFSGGEKARLVLALIVWQ--RPNLLLLDEPTNHLDLDMRQALT-EALIDF--EG-ALVVV 483 (638)
T ss_pred CChhHhcCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHc--CC-eEEEE
Confidence 8542 2222 346777654 899999999 999999999999 9999998888 777776 24 66665
No 319
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.81 E-value=9e-20 Score=177.37 Aligned_cols=125 Identities=15% Similarity=0.195 Sum_probs=90.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC----CCCC-CCCcccChhhhHh--------------HHHHH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----AENF-DYPVAMDIRELIS--------------LEDVM 63 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~----~~~~-~y~~~~~v~e~i~--------------~~~~l 63 (247)
-+++|+||||||||||+++|+|+++|++|+|.+ |.+.. .+.. .+.+..++.+++. +.+++
T Consensus 346 e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l 424 (635)
T PRK11147 346 DKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYL 424 (635)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHH
Confidence 368999999999999999999999999999988 43321 1211 2334456666653 34566
Q ss_pred HHcCCCCC-CchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 64 EELGLGPN-GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 64 ~~~~L~~~-~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
+.+++.+. .... ...+++|.+ ++||++++. +|++|||||||+ ||+.++..+. ++++.+ +.++|+|
T Consensus 425 ~~~~l~~~~~~~~--~~~LSgGekqRl~la~al~~--~p~lLlLDEPt~~LD~~~~~~l~-~~l~~~---~~tvi~v 493 (635)
T PRK11147 425 QDFLFHPKRAMTP--VKALSGGERNRLLLARLFLK--PSNLLILDEPTNDLDVETLELLE-ELLDSY---QGTVLLV 493 (635)
T ss_pred HhcCCCHHHHhCh--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHhC---CCeEEEE
Confidence 77777532 1222 345777654 899999999 999999999999 9999987766 666654 3466655
No 320
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.81 E-value=1.4e-19 Score=173.49 Aligned_cols=132 Identities=14% Similarity=0.065 Sum_probs=96.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhH-------hHHHH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELI-------SLEDV 62 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i-------~~~~~ 62 (247)
-.++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| +| +-+++++. .+.++
T Consensus 369 ~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~ 448 (555)
T TIGR01194 369 DIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQY 448 (555)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccccchhHHHHHHH
Confidence 3689999999999999999999999999999999987642 22333 22 12444432 25677
Q ss_pred HHHcCCCCCCchhh----hHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEE
Q 025844 63 MEELGLGPNGGLIY----CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (247)
Q Consensus 63 l~~~~L~~~~~~~~----~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~ 135 (247)
++.+++.+...... ....+++|+ +++|||+++. +|+++|+||||+ ||+.+.+.+.+.+++.++..+.++++
T Consensus 449 ~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~--~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiii 526 (555)
T TIGR01194 449 LQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLE--DRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIII 526 (555)
T ss_pred HHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 88888764321100 013466654 4899999999 999999999999 99999999884566666556778776
Q ss_pred E
Q 025844 136 V 136 (247)
Q Consensus 136 v 136 (247)
+
T Consensus 527 i 527 (555)
T TIGR01194 527 I 527 (555)
T ss_pred E
Confidence 6
No 321
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.81 E-value=1.2e-19 Score=178.15 Aligned_cols=129 Identities=21% Similarity=0.212 Sum_probs=93.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh----------HH
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------~~ 60 (247)
.++|+||||||||||+++|+|+++|++|+|.++|.|... +.++| +| +-|++||+. +.
T Consensus 493 ~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~ 572 (694)
T TIGR03375 493 KVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEIL 572 (694)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHH
Confidence 589999999999999999999999999999999987642 33444 22 347888875 34
Q ss_pred HHHHHcCCCC------CCchh---hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844 61 DVMEELGLGP------NGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (247)
Q Consensus 61 ~~l~~~~L~~------~~~~~---~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (247)
++++..++.+ .|-.. ..-..+++|+ +.+|||++.. +|+++||||||+ ||+.+...+. +.++++.+
T Consensus 573 ~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~--~p~iliLDE~Ts~LD~~te~~i~-~~l~~~~~ 649 (694)
T TIGR03375 573 RAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLR--DPPILLLDEPTSAMDNRSEERFK-DRLKRWLA 649 (694)
T ss_pred HHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHhC
Confidence 4455444321 11000 0002355554 4899999999 999999999999 9999999988 77777644
Q ss_pred CCCeEEEE
Q 025844 129 RNFNVCAV 136 (247)
Q Consensus 129 ~~~~ii~v 136 (247)
+.|+++|
T Consensus 650 -~~T~iiI 656 (694)
T TIGR03375 650 -GKTLVLV 656 (694)
T ss_pred -CCEEEEE
Confidence 6677665
No 322
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=6.1e-19 Score=171.57 Aligned_cols=138 Identities=14% Similarity=0.133 Sum_probs=92.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC---CCC-C-------CCC-Cc------ccCh-----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---AAE-N-------FDY-PV------AMDI----------- 53 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~---~~~-~-------~~y-~~------~~~v----------- 53 (247)
-+++|+||||||||||+|+|+|.++|++|+|.+.|... ..+ . +.| .+ .++.
T Consensus 28 e~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~ 107 (638)
T PRK10636 28 QKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDG 107 (638)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCH
Confidence 36899999999999999999999999999999876421 001 0 111 00 0000
Q ss_pred ------hh----------hHhHHHHHHHcCCCC-CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHH
Q 025844 54 ------RE----------LISLEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELF 113 (247)
Q Consensus 54 ------~e----------~i~~~~~l~~~~L~~-~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~ 113 (247)
.. .-.++++++.+|+.+ ..... ...+++|++ ++||++++. +|++|||||||+ ||+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~--~~~LSgGerqRv~LA~aL~~--~P~lLLLDEPtn~LD~~ 183 (638)
T PRK10636 108 HAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP--VSDFSGGWRMRLNLAQALIC--RSDLLLLDEPTNHLDLD 183 (638)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc--hhhcCHHHHHHHHHHHHHcc--CCCEEEEcCCCCcCCHH
Confidence 00 012556788888863 22222 356777754 999999999 999999999999 9999
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 114 THVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 114 ~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+...+. ++++++ +.+|++| +|.......+++
T Consensus 184 ~~~~L~-~~L~~~---~~tviiv----sHd~~~l~~~~d 214 (638)
T PRK10636 184 AVIWLE-KWLKSY---QGTLILI----SHDRDFLDPIVD 214 (638)
T ss_pred HHHHHH-HHHHhC---CCeEEEE----eCCHHHHHHhcC
Confidence 987766 665554 4567655 355444444444
No 323
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.81 E-value=6.3e-20 Score=180.09 Aligned_cols=130 Identities=19% Similarity=0.191 Sum_probs=93.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh----------H
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------~ 59 (247)
-.++|+||||||||||+++|+|+++|++|+|.++|.+... +.++| +| +-|++||+. +
T Consensus 484 ~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i 563 (694)
T TIGR01846 484 EFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHV 563 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHH
Confidence 3689999999999999999999999999999999987642 23444 22 347888875 3
Q ss_pred HHHHHHcCCCC------CCchh---hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844 60 EDVMEELGLGP------NGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (247)
Q Consensus 60 ~~~l~~~~L~~------~~~~~---~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (247)
.++++..++.. .|-.. ..-..+++|+ +.+|||+++. +|+++||||||+ ||+.+...+. +.++++.
T Consensus 564 ~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~--~~~ililDEpts~LD~~~~~~i~-~~l~~~~ 640 (694)
T TIGR01846 564 IHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG--NPRILIFDEATSALDYESEALIM-RNMREIC 640 (694)
T ss_pred HHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHh
Confidence 33444443321 10000 0012355554 4899999999 999999999999 9999999988 7777774
Q ss_pred hCCCeEEEE
Q 025844 128 SRNFNVCAV 136 (247)
Q Consensus 128 ~~~~~ii~v 136 (247)
.+.+++++
T Consensus 641 -~~~t~i~i 648 (694)
T TIGR01846 641 -RGRTVIII 648 (694)
T ss_pred -CCCEEEEE
Confidence 46777665
No 324
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.81 E-value=1e-19 Score=182.34 Aligned_cols=156 Identities=17% Similarity=0.258 Sum_probs=125.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-Cc------ccChhhhHh---------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELIS--------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-~~------~~~v~e~i~--------- 58 (247)
-|.|+.|||||||||++++++|..+|++|++++.|.+... +.++| || .+|.||++.
T Consensus 592 ecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~ 671 (885)
T KOG0059|consen 592 ECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLP 671 (885)
T ss_pred ceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCC
Confidence 5789999999999999999999999999999999987643 44777 33 567888774
Q ss_pred -------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (247)
Q Consensus 59 -------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (247)
++..++.++|.+.+... ...+++|.+ ..+|.+++. +|++++||||++ +||.+++.+. ++++++++
T Consensus 672 ~~di~~~v~~ll~~~~L~~~~~~~--~~~ySgG~kRkLs~aialig--~p~vi~LDEPstGmDP~arr~lW-~ii~~~~k 746 (885)
T KOG0059|consen 672 RSDIGSAIEKLLRLVGLGPYANKQ--VRTYSGGNKRRLSFAIALIG--DPSVILLDEPSTGLDPKARRHLW-DIIARLRK 746 (885)
T ss_pred hhHHHHHHHHHHHHcCChhhhccc--hhhCCCcchhhHHHHHHHhc--CCCEEEecCCCCCCCHHHHHHHH-HHHHHHHh
Confidence 67888899999887666 345666653 777878888 999999999999 9999999988 99999988
Q ss_pred CCCeEEEEEecccccccchhHHhhhhHHHhHHHhh-ccCC
Q 025844 129 RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ-LELP 167 (247)
Q Consensus 129 ~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~-~~~p 167 (247)
+|..++ +.+|.+++.+..|+++-....+.++ +|.|
T Consensus 747 ~g~aii----LTSHsMeE~EaLCtR~aImv~G~l~ciGs~ 782 (885)
T KOG0059|consen 747 NGKAII----LTSHSMEEAEALCTRTAIMVIGQLRCIGSP 782 (885)
T ss_pred cCCEEE----EEcCCHHHHHHHhhhhheeecCeeEEecCh
Confidence 766663 5589999999999888666555443 3544
No 325
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.81 E-value=2.2e-19 Score=173.19 Aligned_cols=130 Identities=20% Similarity=0.194 Sum_probs=93.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh----------H
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------~ 59 (247)
-.++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| +| +-|++||+. +
T Consensus 362 ~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i 441 (588)
T PRK13657 362 QTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEM 441 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHH
Confidence 3589999999999999999999999999999999977642 33444 22 347888875 3
Q ss_pred HHHHHHcCCCC------CCchhh---hHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844 60 EDVMEELGLGP------NGGLIY---CMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (247)
Q Consensus 60 ~~~l~~~~L~~------~~~~~~---~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (247)
.++++..++.. .|-... .-..+++| +|.+|||+++. +|+++||||||+ ||+.+...+. +.++.+.
T Consensus 442 ~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~--~~~iliLDEpts~LD~~t~~~i~-~~l~~~~ 518 (588)
T PRK13657 442 RAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLK--DPPILILDEATSALDVETEAKVK-AALDELM 518 (588)
T ss_pred HHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHh
Confidence 34444444321 110000 00125554 44999999999 999999999999 9999999988 6666664
Q ss_pred hCCCeEEEE
Q 025844 128 SRNFNVCAV 136 (247)
Q Consensus 128 ~~~~~ii~v 136 (247)
.++++++|
T Consensus 519 -~~~tvIii 526 (588)
T PRK13657 519 -KGRTTFII 526 (588)
T ss_pred -cCCEEEEE
Confidence 36777666
No 326
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.81 E-value=1.9e-19 Score=172.78 Aligned_cols=130 Identities=18% Similarity=0.124 Sum_probs=94.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-C-----cccChhhhHh-----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS----------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~-----~~~~v~e~i~----------- 58 (247)
-.++|+|+||||||||+++|+|+++|++|+|.++|.+... +.+.| + .+-|++||+.
T Consensus 359 ~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~ 438 (571)
T TIGR02203 359 ETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAE 438 (571)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHH
Confidence 3689999999999999999999999999999999976532 23444 2 2447887765
Q ss_pred HHHHHHHcCCCC------CCch--h-hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844 59 LEDVMEELGLGP------NGGL--I-YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (247)
Q Consensus 59 ~~~~l~~~~L~~------~~~~--~-~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (247)
+.++++..++.+ +|-. + ..-..+++|+ +.+|||+++. +|++++|||||+ ||..+.+.++ +.++++
T Consensus 439 i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~--~~~illLDEpts~LD~~~~~~i~-~~L~~~ 515 (571)
T TIGR02203 439 IERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLK--DAPILILDEATSALDNESERLVQ-AALERL 515 (571)
T ss_pred HHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHH
Confidence 344555555431 1100 0 0002355554 4899999999 999999999999 9999999988 777776
Q ss_pred HhCCCeEEEE
Q 025844 127 KSRNFNVCAV 136 (247)
Q Consensus 127 ~~~~~~ii~v 136 (247)
. .++++++|
T Consensus 516 ~-~~~tiIii 524 (571)
T TIGR02203 516 M-QGRTTLVI 524 (571)
T ss_pred h-CCCEEEEE
Confidence 4 45677666
No 327
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.81 E-value=2.5e-19 Score=171.44 Aligned_cols=132 Identities=17% Similarity=0.091 Sum_probs=94.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Ccc-----cChhhh---H---hHHHHH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIREL---I---SLEDVM 63 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~~-----~~v~e~---i---~~~~~l 63 (247)
-.++|+||||||||||+++|+|+++|++|+|.++|.+... +.++| +|+ -+++++ . .+.+++
T Consensus 350 ~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~ 429 (547)
T PRK10522 350 ELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWL 429 (547)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccccCchHHHHHHHHH
Confidence 3689999999999999999999999999999999987542 23444 222 234443 1 256678
Q ss_pred HHcCCCCCCchhh---hHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 64 EELGLGPNGGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 64 ~~~~L~~~~~~~~---~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
+.++++....... .-..+++|+ +.+|||+++. +|+++|+||||+ ||+.+...+.+.+.+.+++.+.++++|
T Consensus 430 ~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~--~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~i 506 (547)
T PRK10522 430 ERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAE--ERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAI 506 (547)
T ss_pred HHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 8887765321100 002355554 4899999999 999999999999 999999888833333443347777666
No 328
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.80 E-value=4.1e-19 Score=177.73 Aligned_cols=128 Identities=23% Similarity=0.249 Sum_probs=93.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCC-------CCCC------CcccChhhhHh----------H
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-------NFDY------PVAMDIRELIS----------L 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~-------~~~y------~~~~~v~e~i~----------~ 59 (247)
-.++|+||+||||||+++.|.+++.|++|+|.++|.|...- .++. ..+.||+||+. +
T Consensus 380 ~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i 459 (1228)
T KOG0055|consen 380 QTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEI 459 (1228)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHH
Confidence 46899999999999999999999999999999999887541 2222 22557888885 2
Q ss_pred HHHHHHcC---------------CCCCCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 025844 60 EDVMEELG---------------LGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (247)
Q Consensus 60 ~~~l~~~~---------------L~~~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (247)
+++.+..+ .+..|. .+++| +|++|||+++. +|++|||||||+ ||+.+.+.+. +
T Consensus 460 ~~a~k~ana~~fi~~lp~g~~T~vge~g~------qLSGGQKQRIAIARalv~--~P~ILLLDEaTSaLD~~se~~Vq-~ 530 (1228)
T KOG0055|consen 460 EEAAKAANAHDFILKLPDGYDTLVGERGV------QLSGGQKQRIAIARALVR--NPKILLLDEATSALDAESERVVQ-E 530 (1228)
T ss_pred HHHHHHccHHHHHHhhHHhhcccccCCCC------CCChHHHHHHHHHHHHHh--CCCEEEecCcccccCHHHHHHHH-H
Confidence 33332211 122221 25554 45999999999 999999999999 9999988777 8
Q ss_pred HHHHHHhCCCeEEEE-Eecc
Q 025844 122 FVDHLKSRNFNVCAV-YLLD 140 (247)
Q Consensus 122 ll~~l~~~~~~ii~v-~l~d 140 (247)
.+++..+ |.|.++| |-++
T Consensus 531 ALd~~~~-grTTivVaHRLS 549 (1228)
T KOG0055|consen 531 ALDKASK-GRTTIVVAHRLS 549 (1228)
T ss_pred HHHHhhc-CCeEEEEeeehh
Confidence 8888754 5555444 4433
No 329
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.80 E-value=4.9e-19 Score=172.21 Aligned_cols=136 Identities=17% Similarity=0.166 Sum_probs=92.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC--------CCCCCCCC-Cccc----------------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD--------PAAENFDY-PVAM---------------------- 51 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d--------~~~~~~~y-~~~~---------------------- 51 (247)
-+++|+||||||||||+++|+|+++|++|+|.+.|.. +......+ .+.+
T Consensus 30 e~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (635)
T PRK11147 30 ERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVE 109 (635)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 3689999999999999999999999999999987621 00011111 0000
Q ss_pred --Chhhh--------------------HhHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCC
Q 025844 52 --DIREL--------------------ISLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCP 107 (247)
Q Consensus 52 --~v~e~--------------------i~~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEP 107 (247)
+..++ -.+.++++.+|+..+ . ....+++|++ ++||++|+. +|++||||||
T Consensus 110 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~--~--~~~~LSgGekqRv~LAraL~~--~P~lLLLDEP 183 (635)
T PRK11147 110 TDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPD--A--ALSSLSGGWLRKAALGRALVS--NPDVLLLDEP 183 (635)
T ss_pred cCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCC--C--chhhcCHHHHHHHHHHHHHhc--CCCEEEEcCC
Confidence 00000 024567778888632 2 2356777654 999999999 9999999999
Q ss_pred Cc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 108 GQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 108 t~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
|+ ||+.++..+. ++++.+ +.+|++| +|.......+++
T Consensus 184 t~~LD~~~~~~L~-~~L~~~---~~tvliv----sHd~~~l~~~~d 221 (635)
T PRK11147 184 TNHLDIETIEWLE-GFLKTF---QGSIIFI----SHDRSFIRNMAT 221 (635)
T ss_pred CCccCHHHHHHHH-HHHHhC---CCEEEEE----eCCHHHHHHhcC
Confidence 99 9999988777 777665 2466655 354444444444
No 330
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.80 E-value=2.9e-19 Score=171.75 Aligned_cols=130 Identities=18% Similarity=0.145 Sum_probs=93.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh----------H
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------~ 59 (247)
-.++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| ++ +-|++|++. +
T Consensus 342 ~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~ 421 (569)
T PRK10789 342 QMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEI 421 (569)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHH
Confidence 3689999999999999999999999999999999976532 22333 11 337888775 3
Q ss_pred HHHHHHcCCCC------CCchh---hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844 60 EDVMEELGLGP------NGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (247)
Q Consensus 60 ~~~l~~~~L~~------~~~~~---~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (247)
.++++..++.. .|-.. .....+++|+ +++|||+++. +|+++||||||+ ||+.+...+. +.++.+.
T Consensus 422 ~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~--~~~illlDEpts~LD~~~~~~i~-~~l~~~~ 498 (569)
T PRK10789 422 EHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLL--NAEILILDDALSAVDGRTEHQIL-HNLRQWG 498 (569)
T ss_pred HHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEECccccCCHHHHHHHH-HHHHHHh
Confidence 44555544431 11000 0012355554 4899999999 999999999999 9999999988 7777764
Q ss_pred hCCCeEEEE
Q 025844 128 SRNFNVCAV 136 (247)
Q Consensus 128 ~~~~~ii~v 136 (247)
.+.+++++
T Consensus 499 -~~~tii~i 506 (569)
T PRK10789 499 -EGRTVIIS 506 (569)
T ss_pred -CCCEEEEE
Confidence 46777665
No 331
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.80 E-value=4.3e-19 Score=171.16 Aligned_cols=130 Identities=21% Similarity=0.231 Sum_probs=91.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-C-----cccChhhhHh----------H
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS----------L 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~-----~~~~v~e~i~----------~ 59 (247)
-.++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| + .+-|++|++. +
T Consensus 362 ~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~ 441 (585)
T TIGR01192 362 QTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEV 441 (585)
T ss_pred CEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHH
Confidence 3689999999999999999999999999999999876432 22333 1 2347788775 2
Q ss_pred HHHHHHcCCCC------CCc---hhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844 60 EDVMEELGLGP------NGG---LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (247)
Q Consensus 60 ~~~l~~~~L~~------~~~---~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (247)
.+.++..++.. .+- .-.....+++|+ +++|||+++. +|+++|+||||+ ||+.+.+.+. +.++++.
T Consensus 442 ~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~--~p~ililDEpts~LD~~~~~~i~-~~l~~~~ 518 (585)
T TIGR01192 442 YEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILK--NAPILVLDEATSALDVETEARVK-NAIDALR 518 (585)
T ss_pred HHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHH-HHHHHHh
Confidence 22333322211 100 000012355554 4899999999 999999999999 9999999988 7777774
Q ss_pred hCCCeEEEE
Q 025844 128 SRNFNVCAV 136 (247)
Q Consensus 128 ~~~~~ii~v 136 (247)
.+.+++++
T Consensus 519 -~~~tvI~i 526 (585)
T TIGR01192 519 -KNRTTFII 526 (585)
T ss_pred -CCCEEEEE
Confidence 46777666
No 332
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.80 E-value=3.8e-19 Score=170.88 Aligned_cols=129 Identities=18% Similarity=0.189 Sum_probs=93.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh----------HH
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------~~ 60 (247)
.++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| +| +-|++||+. +.
T Consensus 368 ~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~ 447 (576)
T TIGR02204 368 TVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVE 447 (576)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHH
Confidence 589999999999999999999999999999999976532 23444 22 347888876 34
Q ss_pred HHHHHcCCCC------CCchh---hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844 61 DVMEELGLGP------NGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (247)
Q Consensus 61 ~~l~~~~L~~------~~~~~---~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (247)
++++..++.. .|-.. ..-..+++|+ +.++||++.. +|+++|+||||+ +|+.+.+.++ +.++.+.
T Consensus 448 ~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~--~~~ililDEpts~lD~~~~~~i~-~~l~~~~- 523 (576)
T TIGR02204 448 AAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILK--DAPILLLDEATSALDAESEQLVQ-QALETLM- 523 (576)
T ss_pred HHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHh--CCCeEEEeCcccccCHHHHHHHH-HHHHHHh-
Confidence 4555544421 11000 0012355554 4899999999 999999999999 9999998888 7777764
Q ss_pred CCCeEEEE
Q 025844 129 RNFNVCAV 136 (247)
Q Consensus 129 ~~~~ii~v 136 (247)
.+.+++++
T Consensus 524 ~~~t~Iii 531 (576)
T TIGR02204 524 KGRTTLII 531 (576)
T ss_pred CCCEEEEE
Confidence 46777666
No 333
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.80 E-value=2.8e-19 Score=164.58 Aligned_cols=125 Identities=25% Similarity=0.313 Sum_probs=98.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cccc-----ChhhhHh-----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAM-----DIRELIS----------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~~~-----~v~e~i~----------- 58 (247)
-.++||||+|||||||.|+|.|..+|.+|.|+++|-|..+ ++++| +|++ ||.|||.
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kI 442 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKV 442 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHH
Confidence 3689999999999999999999999999999999977643 67888 5554 7888885
Q ss_pred --------HHHHHHHcC------CCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 025844 59 --------LEDVMEELG------LGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (247)
Q Consensus 59 --------~~~~l~~~~------L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (247)
+.|.+-++- +|+-| ..+++|+ +..+|||+.. +|.+++||||-+ ||......+. +
T Consensus 443 ieAA~lAgvHelIl~lP~GYdT~iG~~G------~~LSgGQRQRIaLARAlYG--~P~lvVLDEPNsNLD~~GE~AL~-~ 513 (580)
T COG4618 443 IEAARLAGVHELILRLPQGYDTRIGEGG------ATLSGGQRQRIALARALYG--DPFLVVLDEPNSNLDSEGEAALA-A 513 (580)
T ss_pred HHHHHHcChHHHHHhCcCCccCccCCCC------CCCCchHHHHHHHHHHHcC--CCcEEEecCCCCCcchhHHHHHH-H
Confidence 344443332 22332 2355555 4899999988 999999999998 9999998888 8
Q ss_pred HHHHHHhCCCeEEEE
Q 025844 122 FVDHLKSRNFNVCAV 136 (247)
Q Consensus 122 ll~~l~~~~~~ii~v 136 (247)
.+..++++|.++++|
T Consensus 514 Ai~~~k~rG~~vvvi 528 (580)
T COG4618 514 AILAAKARGGTVVVI 528 (580)
T ss_pred HHHHHHHcCCEEEEE
Confidence 888888888777666
No 334
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.79 E-value=4.8e-19 Score=174.33 Aligned_cols=128 Identities=16% Similarity=0.117 Sum_probs=90.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-C-----cccChhhhHh----------H
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS----------L 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~-----~~~~v~e~i~----------~ 59 (247)
-.++|+||||||||||++.|.|+++|++|+|.++|.+... +.+.| + .+-|++||+. +
T Consensus 508 e~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i 587 (711)
T TIGR00958 508 EVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEI 587 (711)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHH
Confidence 3689999999999999999999999999999999977532 23444 2 2458888886 3
Q ss_pred HHHHHHcCCCC------CCchh---hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844 60 EDVMEELGLGP------NGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (247)
Q Consensus 60 ~~~l~~~~L~~------~~~~~---~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (247)
.++++..++.+ +|-.. ..-..+++|+ +.+|||++.+ +|+++||||||+ ||..+.+.+. + . ..
T Consensus 588 ~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~--~p~ILILDEpTSaLD~~te~~i~-~-~--~~ 661 (711)
T TIGR00958 588 MAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVR--KPRVLILDEATSALDAECEQLLQ-E-S--RS 661 (711)
T ss_pred HHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEEccccccCHHHHHHHH-H-h--hc
Confidence 44555554432 11000 0002355544 4899999999 999999999999 9999887766 4 1 12
Q ss_pred hCCCeEEEE
Q 025844 128 SRNFNVCAV 136 (247)
Q Consensus 128 ~~~~~ii~v 136 (247)
..++|+++|
T Consensus 662 ~~~~TvIiI 670 (711)
T TIGR00958 662 RASRTVLLI 670 (711)
T ss_pred cCCCeEEEE
Confidence 346777666
No 335
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.79 E-value=1e-19 Score=143.01 Aligned_cols=105 Identities=25% Similarity=0.267 Sum_probs=79.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-------CcccChhhhH---hHHHHHHH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELI---SLEDVMEE 65 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-------~~~~~v~e~i---~~~~~l~~ 65 (247)
-+++|+||||||||||+++|+|..+|++|.|.++|.+... ..+.| .+..+++++. .++++++.
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~~~~~~l~~ 91 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENESDERIEEVLKK 91 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHHHHHHHHHHH
T ss_pred CEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3689999999999999999999999999999999877643 12222 2345677664 37788888
Q ss_pred cCCCCCCchhh--hHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc
Q 025844 66 LGLGPNGGLIY--CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ 109 (247)
Q Consensus 66 ~~L~~~~~~~~--~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~ 109 (247)
+++........ ....++.+. +++||++++. +|+++|+||||+
T Consensus 92 l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~--~~~llllDEPt~ 137 (137)
T PF00005_consen 92 LGLEDLLDRKIGQRASSLSGGEKQRLALARALLK--NPKLLLLDEPTN 137 (137)
T ss_dssp TTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHT--TSSEEEEESTTT
T ss_pred cccccccccccccccchhhHHHHHHHHHHHHHHc--CCCEEEEeCCCC
Confidence 88766322221 114456554 3899999999 999999999996
No 336
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.79 E-value=2.9e-19 Score=175.71 Aligned_cols=128 Identities=19% Similarity=0.193 Sum_probs=91.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh-----------H
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-----------L 59 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~-----------~ 59 (247)
.++|+||||||||||+++|+|+++|++|+|.++|.|... +.++| +| +-|++||+. +
T Consensus 502 ~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i 581 (708)
T TIGR01193 502 KTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEI 581 (708)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHH
Confidence 589999999999999999999999999999999987532 23444 22 337777775 2
Q ss_pred HHHHHHcCCCC------CCch--h-hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844 60 EDVMEELGLGP------NGGL--I-YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (247)
Q Consensus 60 ~~~l~~~~L~~------~~~~--~-~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (247)
.++++..++.. .|-. + ..-..+++|+ +.+||||+.. +|+++||||||+ ||..+...+. +.++.+
T Consensus 582 ~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~--~p~iliLDE~Ts~LD~~te~~i~-~~L~~~- 657 (708)
T TIGR01193 582 WAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLT--DSKVLILDESTSNLDTITEKKIV-NNLLNL- 657 (708)
T ss_pred HHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhh--CCCEEEEeCccccCCHHHHHHHH-HHHHHh-
Confidence 33444444321 1100 0 0002355554 4899999999 999999999999 9999998888 656655
Q ss_pred hCCCeEEEE
Q 025844 128 SRNFNVCAV 136 (247)
Q Consensus 128 ~~~~~ii~v 136 (247)
.+.|+++|
T Consensus 658 -~~~T~Iii 665 (708)
T TIGR01193 658 -QDKTIIFV 665 (708)
T ss_pred -cCCEEEEE
Confidence 36677655
No 337
>PLN03140 ABC transporter G family member; Provisional
Probab=99.79 E-value=4.2e-19 Score=184.90 Aligned_cols=131 Identities=18% Similarity=0.219 Sum_probs=101.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC--CCceEEEeccCCCC----CCCCC-------CcccChhhhHh-----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS----------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~--~~G~v~i~g~d~~~----~~~~y-------~~~~~v~e~i~----------- 58 (247)
-+++|+||||||||||+++|+|..++ .+|+|.++|.+... ..++| .+.+|++|++.
T Consensus 907 el~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~ 986 (1470)
T PLN03140 907 VLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEV 986 (1470)
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCC
Confidence 36899999999999999999999763 68999999976531 12333 34567887763
Q ss_pred --------HHHHHHHcCCCCCCchhhh---HHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 025844 59 --------LEDVMEELGLGPNGGLIYC---MEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (247)
Q Consensus 59 --------~~~~l~~~~L~~~~~~~~~---~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~ 124 (247)
++++++.++|.+..+.... ...+++|+ ++.||++|+. +|++|++||||+ ||..+...++ ++++
T Consensus 987 ~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~--~P~lL~LDEPTsgLD~~~a~~v~-~~L~ 1063 (1470)
T PLN03140 987 SKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVA--NPSIIFMDEPTSGLDARAAAIVM-RTVR 1063 (1470)
T ss_pred CHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHH-HHHH
Confidence 4568888898764333321 12355554 3999999999 999999999999 9999999999 9999
Q ss_pred HHHhCCCeEEEE
Q 025844 125 HLKSRNFNVCAV 136 (247)
Q Consensus 125 ~l~~~~~~ii~v 136 (247)
++++.|.+|+++
T Consensus 1064 ~l~~~g~tVI~t 1075 (1470)
T PLN03140 1064 NTVDTGRTVVCT 1075 (1470)
T ss_pred HHHHCCCEEEEE
Confidence 998778887665
No 338
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.5e-18 Score=146.16 Aligned_cols=131 Identities=18% Similarity=0.189 Sum_probs=98.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC--cCCCceEEEeccCCCC---------------CCCCCCcccChhhhHh-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l--~~~~G~v~i~g~d~~~---------------~~~~y~~~~~v~e~i~------- 58 (247)
.+.+|+||||||||||.++|+|.- ++++|+|.++|.|+.. |+.+-.+.+++.+++.
T Consensus 31 EvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~ 110 (251)
T COG0396 31 EVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARR 110 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhh
Confidence 478999999999999999999985 7899999999988632 2211123445555443
Q ss_pred ------------HHHHHHHcCCCCCCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 025844 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (247)
Q Consensus 59 ------------~~~~l~~~~L~~~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (247)
+++.++.+++.+.-..++.-+-+++| -|..|++.++. +|++.|||||-+ ||..+-+.+. +.+
T Consensus 111 ~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~l--ePkl~ILDE~DSGLDIdalk~V~-~~i 187 (251)
T COG0396 111 GARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLL--EPKLAILDEPDSGLDIDALKIVA-EGI 187 (251)
T ss_pred ccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhc--CCCEEEecCCCcCccHHHHHHHH-HHH
Confidence 56788889998732222222234433 23778888888 999999999999 9999998888 999
Q ss_pred HHHHhCCCeEEEE
Q 025844 124 DHLKSRNFNVCAV 136 (247)
Q Consensus 124 ~~l~~~~~~ii~v 136 (247)
+.+++.+.+++++
T Consensus 188 ~~lr~~~~~~liI 200 (251)
T COG0396 188 NALREEGRGVLII 200 (251)
T ss_pred HHHhcCCCeEEEE
Confidence 9998888888766
No 339
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.78 E-value=1.2e-18 Score=168.38 Aligned_cols=131 Identities=21% Similarity=0.302 Sum_probs=102.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC---CCceEEEeccCCCC-----------CCCCCCcccChhhhHh----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET---VRRTMHIVNLDPAA-----------ENFDYPVAMDIRELIS---------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~---~~G~v~i~g~d~~~-----------~~~~y~~~~~v~e~i~---------- 58 (247)
-+.||+||+|||||||+++|+|-... .+|+|.++|..... |+-.+.+.+||+|.+.
T Consensus 57 el~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~ 136 (613)
T KOG0061|consen 57 ELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS 136 (613)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC
Confidence 46899999999999999999999874 78999999954322 2223356789999875
Q ss_pred ---------HHHHHHHcCCCCCCchhhhH---Hhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 025844 59 ---------LEDVMEELGLGPNGGLIYCM---EHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (247)
Q Consensus 59 ---------~~~~l~~~~L~~~~~~~~~~---~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (247)
++++++++||..-.+.+..- ..+++| .|+.+|..++. +|.++++||||+ ||..+..+++ +++
T Consensus 137 ~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~--~P~iLflDEPTSGLDS~sA~~vv-~~L 213 (613)
T KOG0061|consen 137 LSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLT--DPSILFLDEPTSGLDSFSALQVV-QLL 213 (613)
T ss_pred CCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHc--CCCEEEecCCCCCcchhhHHHHH-HHH
Confidence 88999999997432222110 113333 34999999999 999999999999 9999999999 999
Q ss_pred HHHHhCCCeEEEE
Q 025844 124 DHLKSRNFNVCAV 136 (247)
Q Consensus 124 ~~l~~~~~~ii~v 136 (247)
++++++|++||++
T Consensus 214 k~lA~~grtVi~t 226 (613)
T KOG0061|consen 214 KRLARSGRTVICT 226 (613)
T ss_pred HHHHhCCCEEEEE
Confidence 9999888888765
No 340
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.78 E-value=1.2e-18 Score=140.48 Aligned_cols=130 Identities=15% Similarity=0.137 Sum_probs=98.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC---Cc---ccChhhhHh------------
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY---PV---AMDIRELIS------------ 58 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y---~~---~~~v~e~i~------------ 58 (247)
.++|+||+|||||||+|+++.++.|++|.+++.|.+... +.+.| .| .-||.|++-
T Consensus 31 ~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr 110 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDR 110 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccchHHhccCCCh
Confidence 578999999999999999999999999999999988643 23333 11 125666653
Q ss_pred --HHHHHHHcCCCCCCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH-hCCCe
Q 025844 59 --LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFN 132 (247)
Q Consensus 59 --~~~~l~~~~L~~~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~~~ 132 (247)
..+.+++++++..--.. ....+++| ++.+|+|.|.- -|++|+|||||+ ||+.+.+.+- +++.++- .++..
T Consensus 111 ~aa~~llar~~l~~~~L~k-~it~lSGGE~QriAliR~Lq~--~P~ILLLDE~TsALD~~nkr~ie-~mi~~~v~~q~vA 186 (223)
T COG4619 111 AAALDLLARFALPDSILTK-NITELSGGEKQRIALIRNLQF--MPKILLLDEITSALDESNKRNIE-EMIHRYVREQNVA 186 (223)
T ss_pred HHHHHHHHHcCCchhhhcc-hhhhccchHHHHHHHHHHhhc--CCceEEecCchhhcChhhHHHHH-HHHHHHhhhhceE
Confidence 67889999997642111 12344444 45899999988 999999999999 9999999987 7777765 45677
Q ss_pred EEEEE
Q 025844 133 VCAVY 137 (247)
Q Consensus 133 ii~v~ 137 (247)
++.|.
T Consensus 187 v~WiT 191 (223)
T COG4619 187 VLWIT 191 (223)
T ss_pred EEEEe
Confidence 76663
No 341
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.78 E-value=9.8e-19 Score=182.13 Aligned_cols=131 Identities=16% Similarity=0.201 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc---CCCceEEEeccCCCC---CCCCC-------CcccChhhhHh-----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA---ENFDY-------PVAMDIRELIS----------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~---~~~G~v~i~g~d~~~---~~~~y-------~~~~~v~e~i~----------- 58 (247)
-+++|+||||||||||+++|+|..+ +++|+|.++|.+... +.++| .+..|++|++.
T Consensus 790 e~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~ 869 (1394)
T TIGR00956 790 TLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSV 869 (1394)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCC
Confidence 3689999999999999999999997 688999999976531 22333 23467888764
Q ss_pred --------HHHHHHHcCCCCCCchhhh--HHhhhhhH--HHHHHHHhhcCCCCC-EEEEeCCCc-ccHHhHHHHHHHHHH
Q 025844 59 --------LEDVMEELGLGPNGGLIYC--MEHLEDNL--DDWLAEELDNYLDDD-YLVFDCPGQ-IELFTHVPVLRNFVD 124 (247)
Q Consensus 59 --------~~~~l~~~~L~~~~~~~~~--~~~l~~~~--~~~la~al~~~~~p~-~lilDEPt~-LD~~~~~~~~~~ll~ 124 (247)
++++++.+++.+..+.... ...+++|+ ++.||++++. +|+ +|+|||||+ ||..+...++ ++++
T Consensus 870 ~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~--~P~~iLlLDEPTsgLD~~~~~~i~-~~L~ 946 (1394)
T TIGR00956 870 SKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVA--KPKLLLFLDEPTSGLDSQTAWSIC-KLMR 946 (1394)
T ss_pred CHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHc--CCCeEEEEcCCCCCCCHHHHHHHH-HHHH
Confidence 3578888888764433221 01355554 3899999999 997 999999999 9999999999 9999
Q ss_pred HHHhCCCeEEEE
Q 025844 125 HLKSRNFNVCAV 136 (247)
Q Consensus 125 ~l~~~~~~ii~v 136 (247)
+++++|.+|+++
T Consensus 947 ~la~~g~tvI~t 958 (1394)
T TIGR00956 947 KLADHGQAILCT 958 (1394)
T ss_pred HHHHcCCEEEEE
Confidence 997778887665
No 342
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=2.5e-18 Score=164.06 Aligned_cols=149 Identities=19% Similarity=0.273 Sum_probs=105.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC---Cc---ccChhhhHh-----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY---PV---AMDIRELIS----------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y---~~---~~~v~e~i~----------- 58 (247)
-+++++|||||||||+.+.|..++.|++|+|.++|.|+.. +.+++ .| .-+|+|||.
T Consensus 495 e~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i 574 (716)
T KOG0058|consen 495 EVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEI 574 (716)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHH
Confidence 4789999999999999999999999999999999988754 22333 11 337778775
Q ss_pred --------HHHHHHHcC------CCCCCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 025844 59 --------LEDVMEELG------LGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (247)
Q Consensus 59 --------~~~~l~~~~------L~~~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (247)
+.+.+..+. .|+.|. .+++| +|.+|||||.+ +|.+|||||.|+ ||..+...+- +
T Consensus 575 ~~AAk~ANah~FI~~~p~gY~T~VGEkG~------qLSGGQKQRIAIARALlr--~P~VLILDEATSALDaeSE~lVq-~ 645 (716)
T KOG0058|consen 575 EAAAKMANAHEFITNFPDGYNTVVGEKGS------QLSGGQKQRIAIARALLR--NPRVLILDEATSALDAESEYLVQ-E 645 (716)
T ss_pred HHHHHHhChHHHHHhCccccccccCCccc------cccchHHHHHHHHHHHhc--CCCEEEEechhhhcchhhHHHHH-H
Confidence 223333321 233332 35554 45999999999 999999999999 9999876665 7
Q ss_pred HHHHHHhCCCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccch
Q 025844 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 181 (247)
Q Consensus 122 ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~ 181 (247)
.+.++.+ +.||+++ +|.++.... . -+|.|+.|....+..
T Consensus 646 aL~~~~~-~rTVlvI----AHRLSTV~~--------------A--d~Ivvi~~G~V~E~G 684 (716)
T KOG0058|consen 646 ALDRLMQ-GRTVLVI----AHRLSTVRH--------------A--DQIVVIDKGRVVEMG 684 (716)
T ss_pred HHHHhhc-CCeEEEE----ehhhhHhhh--------------c--cEEEEEcCCeEEecc
Confidence 8877754 4777666 244332211 1 167788888777654
No 343
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.78 E-value=3.7e-18 Score=139.56 Aligned_cols=130 Identities=19% Similarity=0.213 Sum_probs=98.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------------CCCCCCcccChhhhH---------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------------ENFDYPVAMDIRELI--------- 57 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------------~~~~y~~~~~v~e~i--------- 57 (247)
-.+++||.||||||||.|+++|+++|++|++.++|..... .+..+.|.+.+...+
T Consensus 40 QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~ 119 (267)
T COG4167 40 QTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTD 119 (267)
T ss_pred cEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhccc
Confidence 3579999999999999999999999999999999865432 112222222222222
Q ss_pred --------hHHHHHHHcCCCCCCchhhhHHhhh--hhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844 58 --------SLEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (247)
Q Consensus 58 --------~~~~~l~~~~L~~~~~~~~~~~~l~--~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (247)
.+.+-++.+||-|..+..+. +.++ +++++++|||+.. +|+++|.||.-. ||...+.++. +++-+|
T Consensus 120 ~~~~~R~~~i~~TL~~VGL~Pdhan~~~-~~la~~QKQRVaLARALIL--~P~iIIaDeAl~~LD~smrsQl~-NL~LeL 195 (267)
T COG4167 120 LEPEQRRKQIFETLRMVGLLPDHANYYP-HMLAPGQKQRVALARALIL--RPKIIIADEALASLDMSMRSQLI-NLMLEL 195 (267)
T ss_pred CChHHHHHHHHHHHHHhccCccccccch-hhcCchhHHHHHHHHHHhc--CCcEEEehhhhhhccHHHHHHHH-HHHHHH
Confidence 26778889999886655443 2333 4456999999999 999999999987 9999999999 888888
Q ss_pred Hh-CCCeEEEE
Q 025844 127 KS-RNFNVCAV 136 (247)
Q Consensus 127 ~~-~~~~ii~v 136 (247)
.+ .|.+-+.|
T Consensus 196 Qek~GiSyiYV 206 (267)
T COG4167 196 QEKQGISYIYV 206 (267)
T ss_pred HHHhCceEEEE
Confidence 64 47766555
No 344
>PLN03232 ABC transporter C family member; Provisional
Probab=99.77 E-value=2.7e-18 Score=180.07 Aligned_cols=129 Identities=20% Similarity=0.190 Sum_probs=95.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh---------HHH
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LED 61 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~---------~~~ 61 (247)
.++|+||+|||||||+++|.|+++|++|+|.++|.|... +.+++ +| +-|+|+|+. +.+
T Consensus 1264 kvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~ 1343 (1495)
T PLN03232 1264 KVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWE 1343 (1495)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHH
Confidence 589999999999999999999999999999999988743 23343 22 237888885 455
Q ss_pred HHHHcCCCCC------Cchh---hhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 025844 62 VMEELGLGPN------GGLI---YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (247)
Q Consensus 62 ~l~~~~L~~~------~~~~---~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (247)
+++..++.+. |-.. ..-..+++|++ .+||||+++ +|++|||||||+ +|..+.+.+. +.+++.. +
T Consensus 1344 al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr--~~~ILILDEATSaLD~~Te~~Iq-~~L~~~~-~ 1419 (1495)
T PLN03232 1344 ALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLR--RSKILVLDEATASVDVRTDSLIQ-RTIREEF-K 1419 (1495)
T ss_pred HHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHHHHHc-C
Confidence 6666555321 1000 00023555544 899999999 999999999999 9999987776 7777763 4
Q ss_pred CCeEEEE
Q 025844 130 NFNVCAV 136 (247)
Q Consensus 130 ~~~ii~v 136 (247)
+.|+++|
T Consensus 1420 ~~TvI~I 1426 (1495)
T PLN03232 1420 SCTMLVI 1426 (1495)
T ss_pred CCEEEEE
Confidence 6787766
No 345
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.1e-18 Score=161.82 Aligned_cols=130 Identities=22% Similarity=0.226 Sum_probs=94.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Ccc-----cChhhhHh----------HH
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS----------LE 60 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~~-----~~v~e~i~----------~~ 60 (247)
-++|+|+|||||||++|+|.+++. .+|+|+++|.|... +-++| ||+ -||..|+. +.
T Consensus 380 kVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~ 458 (591)
T KOG0057|consen 380 KVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVV 458 (591)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHH
Confidence 479999999999999999999999 89999999988743 44555 442 35666664 44
Q ss_pred HHHHHcCCCCC------C-----chhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844 61 DVMEELGLGPN------G-----GLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (247)
Q Consensus 61 ~~l~~~~L~~~------~-----~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (247)
++.+++++.+- | +.. ...+++| |+++++|++.. +|+++++||||+ ||..+.++++ +.+...
T Consensus 459 e~~k~a~~hd~i~~l~~GY~T~VGer--G~~LSGGekQrvslaRa~lK--da~Il~~DEaTS~LD~~TE~~i~-~~i~~~ 533 (591)
T KOG0057|consen 459 EACKRAGLHDVISRLPDGYQTLVGER--GLMLSGGEKQRVSLARAFLK--DAPILLLDEATSALDSETEREIL-DMIMDV 533 (591)
T ss_pred HHHHHcCcHHHHHhccccchhhHhhc--ccccccchHHHHHHHHHHhc--CCCeEEecCcccccchhhHHHHH-HHHHHh
Confidence 55555555431 1 111 1234443 45999999999 999999999999 9999999999 555553
Q ss_pred HhCCCeEEEE-Eecc
Q 025844 127 KSRNFNVCAV-YLLD 140 (247)
Q Consensus 127 ~~~~~~ii~v-~l~d 140 (247)
..++|+|+| |-+|
T Consensus 534 -~~~rTvI~IvH~l~ 547 (591)
T KOG0057|consen 534 -MSGRTVIMIVHRLD 547 (591)
T ss_pred -cCCCeEEEEEecch
Confidence 346776655 5444
No 346
>PLN03073 ABC transporter F family; Provisional
Probab=99.77 E-value=1.3e-18 Score=170.66 Aligned_cols=134 Identities=16% Similarity=0.134 Sum_probs=90.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCC-Cc----ccChhhh--------------HhHHHHH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-PV----AMDIREL--------------ISLEDVM 63 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y-~~----~~~v~e~--------------i~~~~~l 63 (247)
-+++|+||||||||||+++|+|+++|++|+|.+.+.. .++| ++ .+++.++ -.+++++
T Consensus 536 e~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~----~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L 611 (718)
T PLN03073 536 SRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKV----RMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHL 611 (718)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCce----eEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHH
Confidence 3689999999999999999999999999999875421 1111 00 1111111 1256788
Q ss_pred HHcCCCCC-CchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEec
Q 025844 64 EELGLGPN-GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLL 139 (247)
Q Consensus 64 ~~~~L~~~-~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~ 139 (247)
+.+++.+. .... ...+++|++ ++||++++. +|++|||||||+ ||+.+...+. +.+... .+ ++++|
T Consensus 612 ~~~gl~~~~~~~~--~~~LSgGqkqRvaLAraL~~--~p~lLLLDEPT~~LD~~s~~~l~-~~L~~~--~g-tvIiv--- 680 (718)
T PLN03073 612 GSFGVTGNLALQP--MYTLSGGQKSRVAFAKITFK--KPHILLLDEPSNHLDLDAVEALI-QGLVLF--QG-GVLMV--- 680 (718)
T ss_pred HHCCCChHHhcCC--ccccCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHc--CC-EEEEE---
Confidence 89998642 2222 245666654 899999999 999999999999 9999987766 544443 23 66655
Q ss_pred ccccccchhHHhh
Q 025844 140 DSQFITDVTKFIS 152 (247)
Q Consensus 140 d~~~~~d~~~~~s 152 (247)
+|.......+++
T Consensus 681 -SHd~~~i~~~~d 692 (718)
T PLN03073 681 -SHDEHLISGSVD 692 (718)
T ss_pred -ECCHHHHHHhCC
Confidence 354443344433
No 347
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.2e-18 Score=161.36 Aligned_cols=138 Identities=19% Similarity=0.223 Sum_probs=98.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh----------HH
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------~~ 60 (247)
-++|+|++||||||+++.++|.++|++|+|.++|.+++. +.+++ .| +-|+|+|+. +.
T Consensus 366 kvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~ 445 (573)
T COG4987 366 KVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELW 445 (573)
T ss_pred eEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHH
Confidence 379999999999999999999999999999999987643 12222 22 336788775 45
Q ss_pred HHHHHcCCCCCCc-----hhhh----HHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844 61 DVMEELGLGPNGG-----LIYC----MEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (247)
Q Consensus 61 ~~l~~~~L~~~~~-----~~~~----~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (247)
++++++||..... .-.. -..+++| .|.+|||++.+ +.+++||||||. ||+.+.++++ +++.+..
T Consensus 446 ~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~--dapl~lLDEPTegLD~~TE~~vL-~ll~~~~- 521 (573)
T COG4987 446 AALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLH--DAPLWLLDEPTEGLDPITERQVL-ALLFEHA- 521 (573)
T ss_pred HHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHc--CCCeEEecCCcccCChhhHHHHH-HHHHHHh-
Confidence 5666666643100 0000 0224443 34999999999 999999999999 9999999999 5554432
Q ss_pred CCCeEEEEEecccccccchhH
Q 025844 129 RNFNVCAVYLLDSQFITDVTK 149 (247)
Q Consensus 129 ~~~~ii~v~l~d~~~~~d~~~ 149 (247)
+|+|+++| +|.....+.
T Consensus 522 ~~kTll~v----THrL~~le~ 538 (573)
T COG4987 522 EGKTLLMV----THRLRGLER 538 (573)
T ss_pred cCCeEEEE----ecccccHhh
Confidence 47898877 365554333
No 348
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.76 E-value=3.8e-18 Score=178.17 Aligned_cols=131 Identities=18% Similarity=0.176 Sum_probs=95.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC------------------------------------------------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET------------------------------------------------------ 28 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~------------------------------------------------------ 28 (247)
-.++|+||+||||||+++.|.|++.|
T Consensus 1195 ~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1274 (1466)
T PTZ00265 1195 KTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFK 1274 (1466)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 46899999999999999999999998
Q ss_pred CCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh----------HHHHHHHcCCCC------CCchhh---
Q 025844 29 VRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LEDVMEELGLGP------NGGLIY--- 76 (247)
Q Consensus 29 ~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------~~~~l~~~~L~~------~~~~~~--- 76 (247)
++|+|.++|.|... +.++| +| +-||+||+. ++++++..++.. +|-...
T Consensus 1275 ~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe 1354 (1466)
T PTZ00265 1275 NSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGP 1354 (1466)
T ss_pred CCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCC
Confidence 59999999987642 34444 22 458999886 444555444321 110000
Q ss_pred hHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH-hCCCeEEEE
Q 025844 77 CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFNVCAV 136 (247)
Q Consensus 77 ~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~~~ii~v 136 (247)
.-..+++|+ |++||||++. +|++|||||||+ ||..+.+.+. +.++.+. ..+.|+|+|
T Consensus 1355 ~G~~LSGGQkQRIaIARALlr--~p~ILLLDEaTSaLD~~sE~~I~-~~L~~~~~~~~~TvIiI 1415 (1466)
T PTZ00265 1355 YGKSLSGGQKQRIAIARALLR--EPKILLLDEATSSLDSNSEKLIE-KTIVDIKDKADKTIITI 1415 (1466)
T ss_pred CCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHH-HHHHHHhccCCCEEEEE
Confidence 002355554 4899999999 999999999999 9999988887 7777775 357777766
No 349
>PLN03130 ABC transporter C family member; Provisional
Probab=99.76 E-value=7.5e-18 Score=177.42 Aligned_cols=130 Identities=19% Similarity=0.179 Sum_probs=95.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh---------HH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE 60 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~---------~~ 60 (247)
-.+||+||+|||||||+++|.|+++|++|+|.++|.|... +.+++ +| +-|+|+|+. +.
T Consensus 1266 ekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~ 1345 (1622)
T PLN03130 1266 EKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLW 1345 (1622)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHH
Confidence 3689999999999999999999999999999999988753 33444 22 237888875 45
Q ss_pred HHHHHcCCCC------CCchhh---hHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844 61 DVMEELGLGP------NGGLIY---CMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (247)
Q Consensus 61 ~~l~~~~L~~------~~~~~~---~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (247)
++++..++.+ .|-... .-..+++|++ .+||||+++ +|++|||||||+ +|..+.+.+. +.+++..
T Consensus 1346 ~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr--~p~ILILDEATSaLD~~Te~~Iq-~~I~~~~- 1421 (1622)
T PLN03130 1346 ESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLR--RSKILVLDEATAAVDVRTDALIQ-KTIREEF- 1421 (1622)
T ss_pred HHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHC-
Confidence 5666555421 110000 0023555544 899999999 999999999999 9999988777 7777764
Q ss_pred CCCeEEEE
Q 025844 129 RNFNVCAV 136 (247)
Q Consensus 129 ~~~~ii~v 136 (247)
+++|+++|
T Consensus 1422 ~~~TvI~I 1429 (1622)
T PLN03130 1422 KSCTMLII 1429 (1622)
T ss_pred CCCEEEEE
Confidence 46787766
No 350
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.76 E-value=4.3e-18 Score=166.21 Aligned_cols=127 Identities=14% Similarity=0.125 Sum_probs=88.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC---CCCCCCCCcccChhhhHh-----------------HHHH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---AAENFDYPVAMDIRELIS-----------------LEDV 62 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~---~~~~~~y~~~~~v~e~i~-----------------~~~~ 62 (247)
-+++|+||||||||||+++|+|+++|++|++.+++... -.|+...++. +++|++. +.++
T Consensus 479 e~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~ 557 (659)
T TIGR00954 479 NHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQI 557 (659)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHH
Confidence 36899999999999999999999999999998754210 0122111222 6666653 3466
Q ss_pred HHHcCCCCCCchhh-------hHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCe
Q 025844 63 MEELGLGPNGGLIY-------CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN 132 (247)
Q Consensus 63 l~~~~L~~~~~~~~-------~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ 132 (247)
++.+++.+...... ....+++|+ +++|||+++. +|+++||||||+ ||+.+...+. +.+++ .|.+
T Consensus 558 l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~--~p~illLDEpts~LD~~~~~~l~-~~l~~---~~~t 631 (659)
T TIGR00954 558 LDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYH--KPQFAILDECTSAVSVDVEGYMY-RLCRE---FGIT 631 (659)
T ss_pred HHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHH-HHHHH---cCCE
Confidence 77778764321110 012456554 4899999999 999999999999 9999887776 55544 4777
Q ss_pred EEEE
Q 025844 133 VCAV 136 (247)
Q Consensus 133 ii~v 136 (247)
++++
T Consensus 632 vI~i 635 (659)
T TIGR00954 632 LFSV 635 (659)
T ss_pred EEEE
Confidence 7666
No 351
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.75 E-value=2.7e-18 Score=178.92 Aligned_cols=131 Identities=14% Similarity=0.140 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC----cCCCceEEEeccCCC------CCCCCC-------CcccChhhhHh-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC----ETVRRTMHIVNLDPA------AENFDY-------PVAMDIRELIS------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l----~~~~G~v~i~g~d~~------~~~~~y-------~~~~~v~e~i~------- 58 (247)
-+++|+||||||||||+|+|+|.. +|.+|+|.++|.++. ...++| .+.+||+|++.
T Consensus 88 e~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 167 (1394)
T TIGR00956 88 ELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKT 167 (1394)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCC
Confidence 468999999999999999999986 568999999997642 112333 23467777653
Q ss_pred -----------------HHHHHHHcCCCCCCchhhh---HHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhH
Q 025844 59 -----------------LEDVMEELGLGPNGGLIYC---MEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTH 115 (247)
Q Consensus 59 -----------------~~~~l~~~~L~~~~~~~~~---~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~ 115 (247)
.+++++.+||.+..+.... ...+++|+ |+.||++++. +|+++++||||+ ||+.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~--~p~vlllDEPTsgLD~~~~ 245 (1394)
T TIGR00956 168 PQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLG--GAKIQCWDNATRGLDSATA 245 (1394)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHh--CCCEEEEeCCCCCcCHHHH
Confidence 1346777888764322210 12355554 4999999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHhC-CCeEEEE
Q 025844 116 VPVLRNFVDHLKSR-NFNVCAV 136 (247)
Q Consensus 116 ~~~~~~ll~~l~~~-~~~ii~v 136 (247)
..++ +++++++++ |.+++++
T Consensus 246 ~~i~-~~L~~la~~~g~tvii~ 266 (1394)
T TIGR00956 246 LEFI-RALKTSANILDTTPLVA 266 (1394)
T ss_pred HHHH-HHHHHHHHhcCCEEEEE
Confidence 9999 999999764 7777655
No 352
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.75 E-value=6.3e-18 Score=176.58 Aligned_cols=129 Identities=16% Similarity=0.163 Sum_probs=91.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe-ccCCCC-------CCCCC-Cc-----ccChhhhHhH---------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV-NLDPAA-------ENFDY-PV-----AMDIRELISL--------- 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~-g~d~~~-------~~~~y-~~-----~~~v~e~i~~--------- 59 (247)
-+++|+||||||||||+++|+|+++|++|+|.++ |.+... +.++| +| +.|+++++..
T Consensus 412 e~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~ 491 (1466)
T PTZ00265 412 KTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLE 491 (1466)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccc
Confidence 3689999999999999999999999999999995 454421 23444 22 2366666643
Q ss_pred ----------------------------------------------------------HHHHHHcCCCCC------C---
Q 025844 60 ----------------------------------------------------------EDVMEELGLGPN------G--- 72 (247)
Q Consensus 60 ----------------------------------------------------------~~~l~~~~L~~~------~--- 72 (247)
.++++..++... +
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT 571 (1466)
T PTZ00265 492 ALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYET 571 (1466)
T ss_pred hhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCc
Confidence 223333333211 0
Q ss_pred --chhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 025844 73 --GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV 136 (247)
Q Consensus 73 --~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v 136 (247)
+.. ...+++|+ +++||||++. +|++|||||||+ ||+.+...+. +.++++++ .|.++++|
T Consensus 572 ~vg~~--g~~LSGGQkQRiaIARAll~--~P~ILlLDEpTSaLD~~se~~i~-~~L~~~~~~~g~TvIiI 636 (1466)
T PTZ00265 572 LVGSN--ASKLSGGQKQRISIARAIIR--NPKILILDEATSSLDNKSEYLVQ-KTINNLKGNENRITIII 636 (1466)
T ss_pred eeCCC--CCcCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHH-HHHHHHhhcCCCEEEEE
Confidence 000 12355554 4899999999 999999999999 9999998888 88888864 47777666
No 353
>PTZ00243 ABC transporter; Provisional
Probab=99.75 E-value=1.5e-17 Score=174.78 Aligned_cols=129 Identities=18% Similarity=0.205 Sum_probs=96.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh---------HHH
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LED 61 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~---------~~~ 61 (247)
.++|+|++|||||||+++|.|+++|++|+|.++|.|... +.++| +| +-||++|++ +.+
T Consensus 1338 kVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~ 1417 (1560)
T PTZ00243 1338 KVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWA 1417 (1560)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHH
Confidence 589999999999999999999999999999999988753 33444 22 338888886 556
Q ss_pred HHHHcCCCCC------Cchhh---hHHhhhhhHH--HHHHHHhhcCCC-CCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844 62 VMEELGLGPN------GGLIY---CMEHLEDNLD--DWLAEELDNYLD-DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (247)
Q Consensus 62 ~l~~~~L~~~------~~~~~---~~~~l~~~~~--~~la~al~~~~~-p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (247)
+++..++... |-... .-..+++|++ .+||||++. + |++|||||||+ +|..+.+.+. +.+++..
T Consensus 1418 Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~--~~~~ILlLDEATSaLD~~te~~Iq-~~L~~~~- 1493 (1560)
T PTZ00243 1418 ALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLK--KGSGFILMDEATANIDPALDRQIQ-ATVMSAF- 1493 (1560)
T ss_pred HHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhc--CCCCEEEEeCCCccCCHHHHHHHH-HHHHHHC-
Confidence 6776666421 10000 0023555544 899999998 7 89999999999 9999988887 7777653
Q ss_pred CCCeEEEE
Q 025844 129 RNFNVCAV 136 (247)
Q Consensus 129 ~~~~ii~v 136 (247)
.+.|+|+|
T Consensus 1494 ~~~TvI~I 1501 (1560)
T PTZ00243 1494 SAYTVITI 1501 (1560)
T ss_pred CCCEEEEE
Confidence 46777666
No 354
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.75 E-value=9.5e-18 Score=158.97 Aligned_cols=134 Identities=16% Similarity=0.172 Sum_probs=93.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEecc-CCC--CCCC-CCCcccChhhhH----------hHHHHHHHcCCC
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-DPA--AENF-DYPVAMDIRELI----------SLEDVMEELGLG 69 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~-d~~--~~~~-~y~~~~~v~e~i----------~~~~~l~~~~L~ 69 (247)
-++|+||||+|||||+|+|+|...|.+|+|.+... ..+ .|+. .+.++.++.+.+ .++..+..+++.
T Consensus 350 riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~ 429 (530)
T COG0488 350 RIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFT 429 (530)
T ss_pred EEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCC
Confidence 47999999999999999999999999999987532 110 0110 111222444433 377889999998
Q ss_pred CCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccc
Q 025844 70 PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT 145 (247)
Q Consensus 70 ~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~ 145 (247)
+.... .....+|+|.+ +.+|+.+.. +|.+|||||||+ ||+.+...+- +.+ ..-..++++|. ||-+++.
T Consensus 430 ~~~~~-~~v~~LSGGEk~Rl~La~ll~~--~pNvLiLDEPTNhLDi~s~~aLe-~aL---~~f~Gtvl~VS-HDr~Fl~ 500 (530)
T COG0488 430 GEDQE-KPVGVLSGGEKARLLLAKLLLQ--PPNLLLLDEPTNHLDIESLEALE-EAL---LDFEGTVLLVS-HDRYFLD 500 (530)
T ss_pred hHHHh-CchhhcCHhHHHHHHHHHHhcc--CCCEEEEcCCCccCCHHHHHHHH-HHH---HhCCCeEEEEe-CCHHHHH
Confidence 76542 33467887765 888888888 999999999999 9999986554 444 34344676663 5655544
No 355
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.75 E-value=3.8e-18 Score=179.24 Aligned_cols=130 Identities=20% Similarity=0.154 Sum_probs=95.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh---------HH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE 60 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~---------~~ 60 (247)
-.+||+||+|||||||+++|.|+++|++|+|.++|.|... ..+++ +| +-|+|+|+. +.
T Consensus 1313 ekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~ 1392 (1522)
T TIGR00957 1313 EKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVW 1392 (1522)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHH
Confidence 3589999999999999999999999999999999988753 33443 22 237888875 45
Q ss_pred HHHHHcCCCC------CCch--h-hhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844 61 DVMEELGLGP------NGGL--I-YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (247)
Q Consensus 61 ~~l~~~~L~~------~~~~--~-~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (247)
++++..++.+ .|-. + ..-..+++|++ .+||||+++ +|++|||||||+ +|..+...+. +.+++..
T Consensus 1393 ~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr--~~~ILiLDEaTSalD~~Te~~Iq-~~l~~~~- 1468 (1522)
T TIGR00957 1393 WALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLR--KTKILVLDEATAAVDLETDNLIQ-STIRTQF- 1468 (1522)
T ss_pred HHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHc-
Confidence 5666655532 1100 0 00023555544 899999999 999999999999 9999987776 7777653
Q ss_pred CCCeEEEE
Q 025844 129 RNFNVCAV 136 (247)
Q Consensus 129 ~~~~ii~v 136 (247)
+++|+++|
T Consensus 1469 ~~~TvI~I 1476 (1522)
T TIGR00957 1469 EDCTVLTI 1476 (1522)
T ss_pred CCCEEEEE
Confidence 46787766
No 356
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.74 E-value=1.7e-17 Score=131.81 Aligned_cols=131 Identities=15% Similarity=0.115 Sum_probs=101.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCC---CceEEEeccCC----CC-CCCC-------CCcccChhhhHh---------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDP----AA-ENFD-------YPVAMDIRELIS--------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~---~G~v~i~g~d~----~~-~~~~-------y~~~~~v~e~i~--------- 58 (247)
-++.++||+|||||||+..+.|.+.++ +|++++++.+. +. ..++ .+|.++|.+++.
T Consensus 29 eivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG 108 (213)
T COG4136 29 EIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKG 108 (213)
T ss_pred cEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEecCccccc
Confidence 478899999999999999999999774 79999998764 22 1111 144556665542
Q ss_pred ------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 025844 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (247)
Q Consensus 59 ------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (247)
+...+++.||...-..- .+.++++++ +++-|++.. +|+.+++|||++ ||..-+.++.+..+.+++..
T Consensus 109 ~aRr~~a~aAL~~~gL~g~f~~d--P~tlSGGQrARvaL~R~Lla--~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~a 184 (213)
T COG4136 109 NARRNAANAALERSGLDGAFHQD--PATLSGGQRARVALLRALLA--QPKALLLDEPFSRLDVALRDQFRQWVFSEVRAA 184 (213)
T ss_pred HHHHhhHHHHHHHhccchhhhcC--hhhcCcchHHHHHHHHHHHh--CcceeeeCCchhHHHHHHHHHHHHHHHHHHHhc
Confidence 67889999987654333 256777776 889999999 999999999999 99999999886677788778
Q ss_pred CCeEEEEE
Q 025844 130 NFNVCAVY 137 (247)
Q Consensus 130 ~~~ii~v~ 137 (247)
|..++.|.
T Consensus 185 giPtv~VT 192 (213)
T COG4136 185 GIPTVQVT 192 (213)
T ss_pred CCCeEEEe
Confidence 98887773
No 357
>PLN03140 ABC transporter G family member; Provisional
Probab=99.74 E-value=6e-18 Score=176.38 Aligned_cols=131 Identities=15% Similarity=0.190 Sum_probs=98.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCC---CceEEEeccCCCC----CCCCC-------CcccChhhhHhH---------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA----ENFDY-------PVAMDIRELISL--------- 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~---~G~v~i~g~d~~~----~~~~y-------~~~~~v~e~i~~--------- 59 (247)
-+++|+||||||||||+++|+|.++|+ +|+|.++|.+... +.++| .+.+||+|++..
T Consensus 192 e~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~ 271 (1470)
T PLN03140 192 RMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGT 271 (1470)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCC
Confidence 368999999999999999999999998 9999999976521 22333 234677776531
Q ss_pred -----------------------------------------HHHHHHcCCCCCCchhh---hHHhhhhhHH--HHHHHHh
Q 025844 60 -----------------------------------------EDVMEELGLGPNGGLIY---CMEHLEDNLD--DWLAEEL 93 (247)
Q Consensus 60 -----------------------------------------~~~l~~~~L~~~~~~~~---~~~~l~~~~~--~~la~al 93 (247)
+++++.+||....+... ....+++|++ +.||+++
T Consensus 272 ~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL 351 (1470)
T PLN03140 272 RYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMI 351 (1470)
T ss_pred cccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhh
Confidence 33666778864221100 0124555543 8999999
Q ss_pred hcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 025844 94 DNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV 136 (247)
Q Consensus 94 ~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v 136 (247)
+. +|+++++||||+ ||..+..+++ +.++++++ .|.+++++
T Consensus 352 ~~--~p~vlllDEPTsGLDs~t~~~i~-~~Lr~la~~~g~Tviis 393 (1470)
T PLN03140 352 VG--PTKTLFMDEISTGLDSSTTYQIV-KCLQQIVHLTEATVLMS 393 (1470)
T ss_pred cC--CCcEEEEeCCCcCccHHHHHHHH-HHHHHHHHhcCCEEEEE
Confidence 99 999999999999 9999999999 99999875 47777666
No 358
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=3.8e-18 Score=137.92 Aligned_cols=131 Identities=18% Similarity=0.244 Sum_probs=97.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC----C-----------CCCCCCC-Cc------ccChhhhH---
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD----P-----------AAENFDY-PV------AMDIRELI--- 57 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d----~-----------~~~~~~y-~~------~~~v~e~i--- 57 (247)
-|+++=||+||||||++|++.|.+.|++|+|++.-.+ . ..+.++| .| ...-.|.+
T Consensus 38 ECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaeP 117 (235)
T COG4778 38 ECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEP 117 (235)
T ss_pred cEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhH
Confidence 5899999999999999999999999999999986432 1 1133444 11 11111111
Q ss_pred -------------hHHHHHHHcCCCCCCchhhhHHhhhh--hHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 025844 58 -------------SLEDVMEELGLGPNGGLIYCMEHLED--NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (247)
Q Consensus 58 -------------~~~~~l~~~~L~~~~~~~~~~~~l~~--~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (247)
.+.+.+.++++.+......+. .+++ ++++.|||.++. +-++|+|||||+ ||..++..+. +
T Consensus 118 ll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPa-TFSGGEqQRVNIaRgfiv--d~pILLLDEPTasLDa~Nr~vVv-e 193 (235)
T COG4778 118 LLARGVPREVARAKAADLLTRLNLPERLWSLAPA-TFSGGEQQRVNIARGFIV--DYPILLLDEPTASLDATNRAVVV-E 193 (235)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCc-ccCCchheehhhhhhhhc--cCceEEecCCcccccccchHHHH-H
Confidence 156788888876643333322 3443 345999999999 999999999999 9999999999 9
Q ss_pred HHHHHHhCCCeEEEEE
Q 025844 122 FVDHLKSRNFNVCAVY 137 (247)
Q Consensus 122 ll~~l~~~~~~ii~v~ 137 (247)
++++-+..|..++.++
T Consensus 194 li~e~Ka~GaAlvGIF 209 (235)
T COG4778 194 LIREAKARGAALVGIF 209 (235)
T ss_pred HHHHHHhcCceEEEee
Confidence 9999888899998886
No 359
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.73 E-value=3.5e-17 Score=147.09 Aligned_cols=140 Identities=19% Similarity=0.164 Sum_probs=102.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCC-CC-------cccChhh------h----HhHHHHHH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFD-YP-------VAMDIRE------L----ISLEDVME 64 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~-y~-------~~~~v~e------~----i~~~~~l~ 64 (247)
-++.++|.||||||||++.++|+++|++|+|+++|.+...++.. |. .+.-..+ . -.++.+++
T Consensus 350 elvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~Lq 429 (546)
T COG4615 350 ELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQ 429 (546)
T ss_pred cEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHH
Confidence 36889999999999999999999999999999999877554321 10 0000000 0 01667777
Q ss_pred HcCCCCCC---chhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEe
Q 025844 65 ELGLGPNG---GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYL 138 (247)
Q Consensus 65 ~~~L~~~~---~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l 138 (247)
++.+...- +..++.-.++.|++ +++..|++. +.+++++||-.+ -||.-++.+.+.++-.++++|+||++|.
T Consensus 430 rLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllE--eR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIs- 506 (546)
T COG4615 430 RLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLE--ERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAIS- 506 (546)
T ss_pred HHHHhhhhcccCCcccccccccchHHHHHHHHHHHh--hCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEe-
Confidence 77664321 11122335666765 666667888 999999999999 9999999999888899988999998885
Q ss_pred ccccccc
Q 025844 139 LDSQFIT 145 (247)
Q Consensus 139 ~d~~~~~ 145 (247)
||.|+..
T Consensus 507 HDd~YF~ 513 (546)
T COG4615 507 HDDHYFI 513 (546)
T ss_pred cCchhhh
Confidence 6766643
No 360
>PLN03073 ABC transporter F family; Provisional
Probab=99.72 E-value=1.5e-16 Score=156.23 Aligned_cols=138 Identities=14% Similarity=0.208 Sum_probs=88.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC---cCCCceEEEeccCCCCCC---------------------CCC-Ccc--------
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHC---ETVRRTMHIVNLDPAAEN---------------------FDY-PVA-------- 50 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l---~~~~G~v~i~g~d~~~~~---------------------~~y-~~~-------- 50 (247)
.++|+||||||||||+|+|+|.. .|.+|+|.+.++.+.... ..+ .+.
T Consensus 205 ~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~ 284 (718)
T PLN03073 205 HYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETE 284 (718)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 68999999999999999999864 578899987665421111 000 000
Q ss_pred -----------cC---hhhhH-----------------hHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCC
Q 025844 51 -----------MD---IRELI-----------------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYL 97 (247)
Q Consensus 51 -----------~~---v~e~i-----------------~~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~ 97 (247)
.+ +.+.+ .+.++++.+|+.+.. .......+++|++ ++||++++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~-~~~~~~~LSgG~k~rv~LA~aL~~-- 361 (718)
T PLN03073 285 TGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEM-QVKATKTFSGGWRMRIALARALFI-- 361 (718)
T ss_pred ccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHH-HhCchhhCCHHHHHHHHHHHHHhc--
Confidence 00 00000 134455566664221 1112356777654 899999999
Q ss_pred CCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 98 DDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 98 ~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+|++|||||||+ ||+.+...+. ++++.+ +.++++| +|.......+++
T Consensus 362 ~p~lLlLDEPt~~LD~~~~~~l~-~~L~~~---~~tviiv----sHd~~~l~~~~d 409 (718)
T PLN03073 362 EPDLLLLDEPTNHLDLHAVLWLE-TYLLKW---PKTFIVV----SHAREFLNTVVT 409 (718)
T ss_pred CCCEEEEECCCCCCCHHHHHHHH-HHHHHc---CCEEEEE----ECCHHHHHHhCC
Confidence 999999999999 9999988777 666665 5677665 354444444444
No 361
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.71 E-value=3.2e-17 Score=137.55 Aligned_cols=126 Identities=12% Similarity=0.098 Sum_probs=82.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCC---------ceEEEeccCCCC----CCCCC-CcccC----hhhhHhHHHHHHH
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVR---------RTMHIVNLDPAA----ENFDY-PVAMD----IRELISLEDVMEE 65 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~---------G~v~i~g~d~~~----~~~~y-~~~~~----v~e~i~~~~~l~~ 65 (247)
+++|+||||||||||+++|+|++++.. |++.+.|.++.. ..++| +|+.+ ....-.++++++.
T Consensus 24 ~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~~~~~~~~~l~~ 103 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSIISQGDVSEIIEA 103 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEEehhhHHHHHhC
Confidence 678999999999999999999986652 356666655321 12223 22111 1111235666666
Q ss_pred cCCCCCCchhhhHHhhhhhHH--HHHHHHhhc--CCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 66 LGLGPNGGLIYCMEHLEDNLD--DWLAEELDN--YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 66 ~~L~~~~~~~~~~~~l~~~~~--~~la~al~~--~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
...... ....++.+++ +++|++++. ..+|+++++|||++ +|+.....+. ++++++++ +.+++++
T Consensus 104 ---~~~~~~--~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~-~~l~~~~~-~~tiIii 172 (197)
T cd03278 104 ---PGKKVQ--RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFA-RLLKEFSK-ETQFIVI 172 (197)
T ss_pred ---CCcccc--chhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHH-HHHHHhcc-CCEEEEE
Confidence 221111 2345666643 888888762 11679999999999 9999999998 88888854 5666555
No 362
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.70 E-value=2.6e-17 Score=172.64 Aligned_cols=128 Identities=23% Similarity=0.256 Sum_probs=94.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh---------HHH
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LED 61 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~---------~~~ 61 (247)
.++|+|++|||||||+++|.|+++ .+|+|.++|.|... +.+.| +| +-|+|+|++ +.+
T Consensus 1247 kvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~ 1325 (1490)
T TIGR01271 1247 RVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWK 1325 (1490)
T ss_pred EEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHH
Confidence 589999999999999999999997 79999999988743 33444 22 238898885 566
Q ss_pred HHHHcCCCCCC-----chhhhH----HhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 025844 62 VMEELGLGPNG-----GLIYCM----EHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (247)
Q Consensus 62 ~l~~~~L~~~~-----~~~~~~----~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (247)
+++..++...- ++-... ..+++|++ .+||||++. +|++|||||||+ +|..+...+. +.+++.. .
T Consensus 1326 aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr--~~~ILlLDEaTS~lD~~Te~~I~-~~L~~~~-~ 1401 (1490)
T TIGR01271 1326 VAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILS--KAKILLLDEPSAHLDPVTLQIIR-KTLKQSF-S 1401 (1490)
T ss_pred HHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhC--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHc-C
Confidence 77777763210 000000 12455544 899999999 999999999999 9999988877 7777653 4
Q ss_pred CCeEEEE
Q 025844 130 NFNVCAV 136 (247)
Q Consensus 130 ~~~ii~v 136 (247)
++|+++|
T Consensus 1402 ~~TvI~I 1408 (1490)
T TIGR01271 1402 NCTVILS 1408 (1490)
T ss_pred CCEEEEE
Confidence 6788766
No 363
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.70 E-value=8.7e-17 Score=168.71 Aligned_cols=130 Identities=18% Similarity=0.176 Sum_probs=90.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC-CCCCCCCCCcccChhhhHh---------HHHHHHHcCCC---
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEELGLG--- 69 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d-~~~~~~~y~~~~~v~e~i~---------~~~~l~~~~L~--- 69 (247)
-.++|+||||||||||+++|+|+++|++|+|.++|.- ...+. ++..+.|++|++. .+++++..++.
T Consensus 453 ~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~-~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l 531 (1490)
T TIGR01271 453 QLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQT-SWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDI 531 (1490)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCC-CccCCccHHHHHHhccccchHHHHHHHHHHhHHHHH
Confidence 3689999999999999999999999999999998721 01122 2222347888875 23344433321
Q ss_pred ---CCCchh---hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 70 ---PNGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 70 ---~~~~~~---~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
|.+... .....+++|+ +++||||+.. +|+++|||||++ ||+.+.+.+++.++..+. ++.+++++
T Consensus 532 ~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~--~~~illLDep~saLD~~~~~~i~~~~l~~~~-~~~tvilv 604 (1490)
T TIGR01271 532 ALFPEKDKTVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFTHLDVVTEKEIFESCLCKLM-SNKTRILV 604 (1490)
T ss_pred HhccccccccccCcCCCcCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEE
Confidence 111110 0012355554 4999999999 999999999999 999999999955666664 46777666
No 364
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.70 E-value=4.2e-17 Score=141.51 Aligned_cols=130 Identities=15% Similarity=0.144 Sum_probs=85.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCC-CceEEEecc-CC---C------C-------CCC---------CCCcccChhh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNL-DP---A------A-------ENF---------DYPVAMDIRE 55 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~-~G~v~i~g~-d~---~------~-------~~~---------~y~~~~~v~e 55 (247)
-+.+|+|||||||||++++|++++.+. .|++++.+. +. . . ++. ...+.++|.+
T Consensus 26 ~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r 105 (251)
T cd03273 26 QFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVTR 105 (251)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEEE
Confidence 357999999999999999999998875 456666543 11 0 0 000 0011112111
Q ss_pred ------------------hHhHHHHHHHcCCCCCCc------------------hhhhHHhhhhhHH--HHHHHHhh---
Q 025844 56 ------------------LISLEDVMEELGLGPNGG------------------LIYCMEHLEDNLD--DWLAEELD--- 94 (247)
Q Consensus 56 ------------------~i~~~~~l~~~~L~~~~~------------------~~~~~~~l~~~~~--~~la~al~--- 94 (247)
.-.+.++++.+++..... .......++.+++ +++|++++
T Consensus 106 ~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~ 185 (251)
T cd03273 106 QIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLL 185 (251)
T ss_pred EEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhh
Confidence 113677889999873210 0011234555543 78888886
Q ss_pred -cCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 95 -NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 95 -~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
. +|+++|+||||+ ||+.....+. ++++++. .|.+++++
T Consensus 186 ~~--~~~illlDEPt~~ld~~~~~~~~-~~l~~~~-~g~~ii~i 225 (251)
T cd03273 186 FK--PAPMYILDEVDAALDLSHTQNIG-RMIKTHF-KGSQFIVV 225 (251)
T ss_pred cc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHc-CCCEEEEE
Confidence 5 789999999999 9999999988 8888874 47666655
No 365
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.70 E-value=2.6e-16 Score=135.48 Aligned_cols=130 Identities=16% Similarity=0.171 Sum_probs=82.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHH----------------hCCcCCCc--------eEEEeccCCC----CC------CCCC-
Q 025844 3 YAQLVIGPAGSGKSTYCSSLY----------------RHCETVRR--------TMHIVNLDPA----AE------NFDY- 47 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~----------------g~l~~~~G--------~v~i~g~d~~----~~------~~~y- 47 (247)
-+++|+||||||||||+++|+ +++.+.+| ++.+.|.+.. .+ .++|
T Consensus 24 ~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~ 103 (243)
T cd03272 24 KHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPIDKEEVRLRRTIGLK 103 (243)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCCCCEEEEEEEEECC
Confidence 368999999999999999998 44555555 5555553211 11 1222
Q ss_pred Cc-------ccChhhhHhHHHHHHHcCCCCCCc------------------hhhhHHhhhhhH--HHHHHHHhhc--CCC
Q 025844 48 PV-------AMDIRELISLEDVMEELGLGPNGG------------------LIYCMEHLEDNL--DDWLAEELDN--YLD 98 (247)
Q Consensus 48 ~~-------~~~v~e~i~~~~~l~~~~L~~~~~------------------~~~~~~~l~~~~--~~~la~al~~--~~~ 98 (247)
++ ..+..+ +...++.+++.+... .......+++++ ++.||++++. ..+
T Consensus 104 ~~~~~l~~~~~t~~e---i~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~ 180 (243)
T cd03272 104 KDEYFLDKKNVTKND---VMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDP 180 (243)
T ss_pred CCEEEECCeEcCHHH---HHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCC
Confidence 11 122222 445666666654210 001123455554 3889999962 116
Q ss_pred CCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025844 99 DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (247)
Q Consensus 99 p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (247)
|+++|+|||++ +|+.+.+.+. +.++++++ +.++++++
T Consensus 181 ~~illlDEp~~~ld~~~~~~~~-~~l~~~~~-~~~ii~~~ 218 (243)
T cd03272 181 APFYLFDEIDAALDAQYRTAVA-NMIKELSD-GAQFITTT 218 (243)
T ss_pred CCEEEEECCccCCCHHHHHHHH-HHHHHHhC-CCEEEEEe
Confidence 89999999999 9999999988 78888755 66665554
No 366
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.67 E-value=3.5e-16 Score=164.53 Aligned_cols=130 Identities=20% Similarity=0.252 Sum_probs=88.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC-CCCCCCCCcccChhhhHh---------HHHHHHHcC-----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-AAENFDYPVAMDIRELIS---------LEDVMEELG----- 67 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~-~~~~~~y~~~~~v~e~i~---------~~~~l~~~~----- 67 (247)
-.++|+||||||||||+++|+|+++|++|+|.++|.-. ..|+ ++..+.|++|++. .+++++..+
T Consensus 665 ~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~-~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l 743 (1522)
T TIGR00957 665 ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQ-AWIQNDSLRENILFGKALNEKYYQQVLEACALLPDL 743 (1522)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCC-ccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHH
Confidence 36899999999999999999999999999999876210 1122 2223457888875 233444332
Q ss_pred -CCCCCchh---hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH--HHHhCCCeEEEE
Q 025844 68 -LGPNGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD--HLKSRNFNVCAV 136 (247)
Q Consensus 68 -L~~~~~~~---~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~--~l~~~~~~ii~v 136 (247)
.-|.|... ..-..+++|+ |++||||+.. +|+++|||||++ ||+.+.+.+++.++. .+ ..+.+++++
T Consensus 744 ~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~--~~~illLDEp~saLD~~~~~~i~~~l~~~~~~-~~~~tvIlv 818 (1522)
T TIGR00957 744 EILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS--NADIYLFDDPLSAVDAHVGKHIFEHVIGPEGV-LKNKTRILV 818 (1522)
T ss_pred HhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHHHHHHhhhhhh-hcCCEEEEE
Confidence 22322110 0012456655 4999999999 999999999999 999999999844442 22 246777666
No 367
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.67 E-value=5.5e-16 Score=132.68 Aligned_cols=72 Identities=17% Similarity=0.126 Sum_probs=55.1
Q ss_pred HHHHHHcCCCCC-CchhhhHHhhhhhH--HHHHHHHhhcCCCC--CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeE
Q 025844 60 EDVMEELGLGPN-GGLIYCMEHLEDNL--DDWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (247)
Q Consensus 60 ~~~l~~~~L~~~-~~~~~~~~~l~~~~--~~~la~al~~~~~p--~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~i 133 (247)
.+.++.+++.+. ..... ..++.++ ++.||++++. +| +++|+||||+ ||+.++..+. ++++++++.|.++
T Consensus 118 ~~~l~~~~l~~~~~~~~~--~~LSgG~~qrv~laral~~--~p~~~llllDEPt~gLD~~~~~~l~-~~l~~~~~~g~ti 192 (226)
T cd03270 118 LGFLVDVGLGYLTLSRSA--PTLSGGEAQRIRLATQIGS--GLTGVLYVLDEPSIGLHPRDNDRLI-ETLKRLRDLGNTV 192 (226)
T ss_pred HHHHHHCCCCcccccCcc--CcCCHHHHHHHHHHHHHHh--CCCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHhCCCEE
Confidence 457778888652 22222 3455554 4899999998 87 5999999999 9999999998 8888887678887
Q ss_pred EEE
Q 025844 134 CAV 136 (247)
Q Consensus 134 i~v 136 (247)
+++
T Consensus 193 i~i 195 (226)
T cd03270 193 LVV 195 (226)
T ss_pred EEE
Confidence 766
No 368
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.66 E-value=7.1e-16 Score=125.38 Aligned_cols=130 Identities=17% Similarity=0.194 Sum_probs=94.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------------CCCCC-Cc--------c----cCh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------------ENFDY-PV--------A----MDI 53 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------------~~~~y-~~--------~----~~v 53 (247)
-+.+|+|++|||||||+++|++.+.|+.|+|.+...+-.. .+.++ .+ . -+|
T Consensus 33 eVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~Ni 112 (258)
T COG4107 33 EVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNI 112 (258)
T ss_pred cEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCcc
Confidence 4689999999999999999999999999999997633211 11111 00 0 012
Q ss_pred hhh-----------H--hHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHH
Q 025844 54 REL-----------I--SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (247)
Q Consensus 54 ~e~-----------i--~~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~ 117 (247)
.|- + ...+|++++.+.+..-.-.+ ..++++++ ..|||-+.. .|+++++||||. ||...+..
T Consensus 113 GERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~P-rtFSGGMqQRLQiARnLVt--~PrLvfMDEPTGGLDVSVQAR 189 (258)
T COG4107 113 GERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLP-RTFSGGMQQRLQIARNLVT--RPRLVFMDEPTGGLDVSVQAR 189 (258)
T ss_pred chhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcc-cccchHHHHHHHHHHHhcc--CCceEEecCCCCCcchhhHHH
Confidence 111 1 16789999998875422211 24566654 889999999 999999999999 99999999
Q ss_pred HHHHHHHHHHh-CCCeEEEE
Q 025844 118 VLRNFVDHLKS-RNFNVCAV 136 (247)
Q Consensus 118 ~~~~ll~~l~~-~~~~ii~v 136 (247)
++ ++++.|.. .+..+++|
T Consensus 190 LL-DllrgLv~~l~la~viV 208 (258)
T COG4107 190 LL-DLLRGLVRELGLAVVIV 208 (258)
T ss_pred HH-HHHHHHHHhcCceEEEE
Confidence 98 99999865 47777666
No 369
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.66 E-value=4.2e-16 Score=156.42 Aligned_cols=154 Identities=20% Similarity=0.194 Sum_probs=104.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC---Cc---ccChhhhHh-------HHHH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY---PV---AMDIRELIS-------LEDV 62 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y---~~---~~~v~e~i~-------~~~~ 62 (247)
..++++||+||||||...+|-.++.|++|.|.++|.|... ++++. .| +-||+||+. .+|+
T Consensus 1017 qTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eI 1096 (1228)
T KOG0055|consen 1017 QTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEI 1096 (1228)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHH
Confidence 3589999999999999999999999999999999988754 22222 12 447888875 2333
Q ss_pred HHHcCC---C------CCCchhhh---HHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844 63 MEELGL---G------PNGGLIYC---MEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (247)
Q Consensus 63 l~~~~L---~------~~~~~~~~---~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (247)
++...+ . |+|-.... --.+++| +|.+||||+.+ +|++|||||-|+ ||..+.+.+- +.+++..
T Consensus 1097 i~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilR--nPkILLLDEATSALDseSErvVQ-eALd~a~ 1173 (1228)
T KOG0055|consen 1097 IEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILR--NPKILLLDEATSALDSESERVVQ-EALDRAM 1173 (1228)
T ss_pred HHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHc--CCCeeeeeccchhhhhhhHHHHH-HHHHHhh
Confidence 332211 1 11111000 0134554 45999999999 999999999999 9999877665 8888875
Q ss_pred hCCCeEEEE-EecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccch
Q 025844 128 SRNFNVCAV-YLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 181 (247)
Q Consensus 128 ~~~~~ii~v-~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~ 181 (247)
.|.|.++| |-+++..- .-.|.|+.+....++.
T Consensus 1174 -~gRT~IvIAHRLSTIqn---------------------aD~I~Vi~~G~VvE~G 1206 (1228)
T KOG0055|consen 1174 -EGRTTIVIAHRLSTIQN---------------------ADVIAVLKNGKVVEQG 1206 (1228)
T ss_pred -cCCcEEEEecchhhhhc---------------------CCEEEEEECCEEEecc
Confidence 45555444 43332221 1256788888777766
No 370
>PLN03130 ABC transporter C family member; Provisional
Probab=99.66 E-value=3.9e-16 Score=164.61 Aligned_cols=130 Identities=15% Similarity=0.197 Sum_probs=91.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCC-ceEEEeccCCCCCCCCCCcccChhhhHh---------HHHHHHHcCCCC---
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVR-RTMHIVNLDPAAENFDYPVAMDIRELIS---------LEDVMEELGLGP--- 70 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~-G~v~i~g~d~~~~~~~y~~~~~v~e~i~---------~~~~l~~~~L~~--- 70 (247)
.++|+||+|||||||+++|.|.++|.+ |+|.+.+.---...-++-.+-|++||+. ++++++..++.+
T Consensus 645 ~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~ 724 (1622)
T PLN03130 645 LVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLD 724 (1622)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHH
Confidence 589999999999999999999999999 8998754211111123334568999886 555666555422
Q ss_pred ---CCchhh---hHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 71 ---NGGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 71 ---~~~~~~---~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
.|.... .-..+++|+ |++||||+.. +|+++|||||++ ||..+.+.++++.++.+. .++|+|+|
T Consensus 725 ~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~--~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlV 796 (1622)
T PLN03130 725 LLPGGDLTEIGERGVNISGGQKQRVSMARAVYS--NSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLV 796 (1622)
T ss_pred hCCCcccccccCCCCCCCHHHHHHHHHHHHHhC--CCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEE
Confidence 111110 002356655 4899999999 999999999999 999998888767776653 46676655
No 371
>PLN03232 ABC transporter C family member; Provisional
Probab=99.66 E-value=6.2e-16 Score=162.47 Aligned_cols=130 Identities=14% Similarity=0.170 Sum_probs=89.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC-CCCCCCCcccChhhhHh---------HHHHHHHcCCCC---
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-AENFDYPVAMDIRELIS---------LEDVMEELGLGP--- 70 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~-~~~~~y~~~~~v~e~i~---------~~~~l~~~~L~~--- 70 (247)
.++|+||+|||||||+++|.|.++|++|.+.......+ ...-++-.+-|++||+. ++++++..++.+
T Consensus 645 ~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~ 724 (1495)
T PLN03232 645 LVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLD 724 (1495)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHH
Confidence 58999999999999999999999999886543221111 01112333558888886 556666655422
Q ss_pred ---CCchhhh---HHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 71 ---NGGLIYC---MEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 71 ---~~~~~~~---~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
.|....- -..+++|+ |++||||+.. +|+++|||||++ ||..+.+.+++++++.+. .++|+|+|
T Consensus 725 ~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~--~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l-~~kT~Ilv 796 (1495)
T PLN03232 725 LLPGRDLTEIGERGVNISGGQKQRVSMARAVYS--NSDIYIFDDPLSALDAHVAHQVFDSCMKDEL-KGKTRVLV 796 (1495)
T ss_pred hCCCCCCceecCCCcccCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHHHHHHhhhhh-cCCEEEEE
Confidence 2111000 02356655 4999999999 999999999999 999999888866676543 45666655
No 372
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=2e-16 Score=146.02 Aligned_cols=131 Identities=21% Similarity=0.236 Sum_probs=82.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe-------ccCCCCCCCCCCcccChhhhHh-------------HHH-HH
Q 025844 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV-------NLDPAAENFDYPVAMDIRELIS-------------LED-VM 63 (247)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~-------g~d~~~~~~~y~~~~~v~e~i~-------------~~~-~l 63 (247)
+|++||||+|||||+|+|+. |.|... |-+.....-....++.+.+++. +.. ++
T Consensus 109 YGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L 182 (582)
T KOG0062|consen 109 YGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKIL 182 (582)
T ss_pred cceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHH
Confidence 58999999999999999997 222221 1111000000011222222221 222 66
Q ss_pred HHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecc
Q 025844 64 EELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLD 140 (247)
Q Consensus 64 ~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d 140 (247)
..+|+.+..... +...+++|++ .+||||+.. +||+|+|||||+ ||..+...+- . .|...+.|+++|. ||
T Consensus 183 ~glGFt~emq~~-pt~slSGGWrMrlaLARAlf~--~pDlLLLDEPTNhLDv~av~WLe-~---yL~t~~~T~liVS-HD 254 (582)
T KOG0062|consen 183 AGLGFTPEMQLQ-PTKSLSGGWRMRLALARALFA--KPDLLLLDEPTNHLDVVAVAWLE-N---YLQTWKITSLIVS-HD 254 (582)
T ss_pred HhCCCCHHHHhc-cccccCcchhhHHHHHHHHhc--CCCEEeecCCcccchhHHHHHHH-H---HHhhCCceEEEEe-cc
Confidence 678887754332 2457888765 899999999 999999999999 9998764333 3 3444456776664 78
Q ss_pred cccccchhH
Q 025844 141 SQFITDVTK 149 (247)
Q Consensus 141 ~~~~~d~~~ 149 (247)
..|+.....
T Consensus 255 r~FLn~V~t 263 (582)
T KOG0062|consen 255 RNFLNTVCT 263 (582)
T ss_pred HHHHHHHHH
Confidence 887765544
No 373
>PTZ00243 ABC transporter; Provisional
Probab=99.65 E-value=5.5e-16 Score=163.10 Aligned_cols=128 Identities=20% Similarity=0.159 Sum_probs=86.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC-CCCCCCCCCcccChhhhHh---------HHHHHHHc------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEEL------ 66 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d-~~~~~~~y~~~~~v~e~i~---------~~~~l~~~------ 66 (247)
-+++|+||||||||||+++|+|.++|++|+|.+.+.- ...|. ++..+.|++|++. ++++++..
T Consensus 687 ~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~-~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l 765 (1560)
T PTZ00243 687 KLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQ-AWIMNATVRGNILFFDEEDAARLADAVRVSQLEADL 765 (1560)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCC-CccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHH
Confidence 3689999999999999999999999999999874210 00111 1112457887774 22233322
Q ss_pred -----CCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 67 -----GLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 67 -----~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
|+....+.. ...+++|++ ++||||+.. +|+++|||||++ ||+.+...+++.++.... .|.+++++
T Consensus 766 ~~l~~g~~t~i~~~--g~~LSGGQkqRvaLARAl~~--~p~illLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlv 838 (1560)
T PTZ00243 766 AQLGGGLETEIGEK--GVNLSGGQKARVSLARAVYA--NRDVYLLDDPLSALDAHVGERVVEECFLGAL-AGKTRVLA 838 (1560)
T ss_pred HHhhccchHHhcCC--CCCCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHHHHHHHHhh-CCCEEEEE
Confidence 222111111 134566554 899999999 999999999999 999998888755554432 46777666
No 374
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.64 E-value=2.4e-15 Score=126.88 Aligned_cols=122 Identities=16% Similarity=0.137 Sum_probs=76.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH----hCCcCCCceEEEec----cCCCCCCCCC------------CcccChhhhHh---HH
Q 025844 4 AQLVIGPAGSGKSTYCSSLY----RHCETVRRTMHIVN----LDPAAENFDY------------PVAMDIRELIS---LE 60 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~----g~l~~~~G~v~i~g----~d~~~~~~~y------------~~~~~v~e~i~---~~ 60 (247)
+++|+||||||||||+++|. |...+..|.+.... .......+.+ ...+++.+++. -.
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~~~~~ 103 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIFCHQG 103 (204)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhceeeechH
Confidence 78999999999999999995 88888777554111 1111111111 11124444331 01
Q ss_pred HHHHHcCCCCCCchhhhHHhhhhhHH--------HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHH-HHHHHHHHHHHhC-
Q 025844 61 DVMEELGLGPNGGLIYCMEHLEDNLD--------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHV-PVLRNFVDHLKSR- 129 (247)
Q Consensus 61 ~~l~~~~L~~~~~~~~~~~~l~~~~~--------~~la~al~~~~~p~~lilDEPt~-LD~~~~~-~~~~~ll~~l~~~- 129 (247)
++-+.+.-. ...++.+++ ++++++++. +|+++++|||++ ||+..+. .+. ++++++++.
T Consensus 104 ~~~~~~~~~--------~~~LS~G~~~~~~la~rlala~al~~--~p~illlDEP~~~LD~~~~~~~l~-~~l~~~~~~~ 172 (204)
T cd03240 104 ESNWPLLDM--------RGRCSGGEKVLASLIIRLALAETFGS--NCGILALDEPTTNLDEENIEESLA-EIIEERKSQK 172 (204)
T ss_pred HHHHHHhcC--------ccccCccHHHHHHHHHHHHHHHHhcc--CCCEEEEcCCccccCHHHHHHHHH-HHHHHHHhcc
Confidence 111111000 123344332 467888888 999999999999 9999998 777 888888665
Q ss_pred CCeEEEE
Q 025844 130 NFNVCAV 136 (247)
Q Consensus 130 ~~~ii~v 136 (247)
+.+++++
T Consensus 173 ~~~iiii 179 (204)
T cd03240 173 NFQLIVI 179 (204)
T ss_pred CCEEEEE
Confidence 6677665
No 375
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.64 E-value=2.4e-15 Score=135.76 Aligned_cols=157 Identities=17% Similarity=0.248 Sum_probs=115.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC-----CCceEEEeccCCCC-----------CCCC---------CCcccChhhhH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA-----------ENFD---------YPVAMDIRELI 57 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~g~d~~~-----------~~~~---------y~~~~~v~e~i 57 (247)
-.++++|.+|||||-..+.+.|+++. -+|+|.+.|.|.-. ..+. ..|-.+|...+
T Consensus 37 EtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi 116 (534)
T COG4172 37 ETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQL 116 (534)
T ss_pred CEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHH
Confidence 36899999999999999999999975 36899999987521 1111 12333554444
Q ss_pred h-----------------HHHHHHHcCCCCCCchhh-hHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHH
Q 025844 58 S-----------------LEDVMEELGLGPNGGLIY-CMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHV 116 (247)
Q Consensus 58 ~-----------------~~~~l~~~~L~~~~~~~~-~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~ 116 (247)
. +.++++.+|+.....+.. --+.+++|++ +.||.|++. +|++||.||||. ||...+.
T Consensus 117 ~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan--~P~lLIADEPTTALDVtvQa 194 (534)
T COG4172 117 AEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALAN--EPDLLIADEPTTALDVTVQA 194 (534)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcC--CCCeEeecCCcchhhhhhHH
Confidence 2 677888999875433221 1245666654 899999999 999999999998 9999999
Q ss_pred HHHHHHHHHHHh-CCCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccch
Q 025844 117 PVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 181 (247)
Q Consensus 117 ~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~ 181 (247)
+++ ++++.|++ .|+.++++ +|.+.-...|.+ .+.|+.+.+.++..
T Consensus 195 QIL-~Ll~~Lq~~~gMa~lfI----THDL~iVr~~AD---------------rV~VM~~G~ivE~~ 240 (534)
T COG4172 195 QIL-DLLKELQAELGMAILFI----THDLGIVRKFAD---------------RVYVMQHGEIVETG 240 (534)
T ss_pred HHH-HHHHHHHHHhCcEEEEE----eccHHHHHHhhh---------------hEEEEeccEEeecC
Confidence 999 99999975 48888766 366554555555 56788888887765
No 376
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.64 E-value=5.4e-16 Score=131.47 Aligned_cols=129 Identities=16% Similarity=0.133 Sum_probs=74.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC-cCCCceEEEec----cCCC--CCCCCC-------------CcccChhhhHhHHHHH
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHC-ETVRRTMHIVN----LDPA--AENFDY-------------PVAMDIRELISLEDVM 63 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l-~~~~G~v~i~g----~d~~--~~~~~y-------------~~~~~v~e~i~~~~~l 63 (247)
+++|+|||||||||++++|++.+ .+..+...... .... ...+.+ ...++..+..... .+
T Consensus 30 ~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~gl~~~~~~~~~-~l 108 (213)
T cd03279 30 LFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRGLDYDQFTRIV-LL 108 (213)
T ss_pred EEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEEecCCCHHHHHHhh-hh
Confidence 78999999999999999999543 33333333210 0000 001111 0111222111100 12
Q ss_pred HHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcC--------CCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCe
Q 025844 64 EELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNY--------LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN 132 (247)
Q Consensus 64 ~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~--------~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ 132 (247)
+..++.+..... ...++.++ ++.+|++++.. .+|+++|+|||++ +|+.+...+. ++++++++++.+
T Consensus 109 ~~g~l~~~l~~~--~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~-~~l~~~~~~~~t 185 (213)
T cd03279 109 PQGEFDRFLARP--VSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVA-TALELIRTENRM 185 (213)
T ss_pred hhcchHHHhcCC--ccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCE
Confidence 222232221111 12345443 38889999741 1578999999999 9999999988 888888766778
Q ss_pred EEEE
Q 025844 133 VCAV 136 (247)
Q Consensus 133 ii~v 136 (247)
++++
T Consensus 186 ii~i 189 (213)
T cd03279 186 VGVI 189 (213)
T ss_pred EEEE
Confidence 7666
No 377
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.63 E-value=9.1e-16 Score=132.94 Aligned_cols=133 Identities=17% Similarity=0.232 Sum_probs=85.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC-------C-----CC---------CC--------------CCCC
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-------P-----AA---------EN--------------FDYP 48 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d-------~-----~~---------~~--------------~~y~ 48 (247)
+++|+|||||||||++.+|++.+.+..|++...+.+ . .. +. ..|.
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ 103 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSYR 103 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEEE
Confidence 578999999999999999999987766655443211 0 00 00 0000
Q ss_pred cccChhhhHhHHHHHHHcCCCCCCc--------------------hhhhHHhhhhhHH--HHHHHHhhc--CCCCCEEEE
Q 025844 49 VAMDIRELISLEDVMEELGLGPNGG--------------------LIYCMEHLEDNLD--DWLAEELDN--YLDDDYLVF 104 (247)
Q Consensus 49 ~~~~v~e~i~~~~~l~~~~L~~~~~--------------------~~~~~~~l~~~~~--~~la~al~~--~~~p~~lil 104 (247)
.+-.....-.++++++.+|+.+... .......++.+++ +.||++++. ..+|+++|+
T Consensus 104 ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lll 183 (247)
T cd03275 104 INGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVL 183 (247)
T ss_pred ECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 0000000112568888888864311 1111234555543 888998875 014899999
Q ss_pred eCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025844 105 DCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (247)
Q Consensus 105 DEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (247)
|||++ ||+..+..+. +++++++++|.+++++.
T Consensus 184 DEPt~~LD~~~~~~l~-~~i~~~~~~g~~vi~is 216 (247)
T cd03275 184 DEVDAALDNTNVGKVA-SYIREQAGPNFQFIVIS 216 (247)
T ss_pred ecccccCCHHHHHHHH-HHHHHhccCCcEEEEEE
Confidence 99999 9999999988 88888876677777663
No 378
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.63 E-value=1.1e-15 Score=139.54 Aligned_cols=131 Identities=15% Similarity=0.191 Sum_probs=90.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC--CCCCCCCCCcccChhhhHh------------HHHHHHHcCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD--PAAENFDYPVAMDIRELIS------------LEDVMEELGL 68 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d--~~~~~~~y~~~~~v~e~i~------------~~~~l~~~~L 68 (247)
-+++++||||-|||||+++|+|.++|++|. ..+.. ...|.+.-..+.||++.+. -.|+++-+++
T Consensus 368 EvigilGpNgiGKTTFvk~LAG~ikPdeg~--~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l 445 (591)
T COG1245 368 EVIGILGPNGIGKTTFVKLLAGVIKPDEGS--EEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNL 445 (591)
T ss_pred eEEEEECCCCcchHHHHHHHhccccCCCCC--CccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccch
Confidence 478999999999999999999999999997 11111 1223333233557777664 2445555555
Q ss_pred CCCCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCeEEEEEeccc
Q 025844 69 GPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDS 141 (247)
Q Consensus 69 ~~~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v~l~d~ 141 (247)
.+...+. ...+++| +++++|.+|.. ++++.++|||.+ ||...+..+. +.|++...+ +.+.++| -||.
T Consensus 446 ~~i~e~~--v~~LSGGELQRvaIaa~L~r--eADlYllDEPSA~LDvEqR~~va-kvIRR~~e~~~kta~vV-dHDi 516 (591)
T COG1245 446 EDLLERP--VDELSGGELQRVAIAAALSR--EADLYLLDEPSAYLDVEQRIIVA-KVIRRFIENNEKTALVV-DHDI 516 (591)
T ss_pred HHHHhcc--cccCCchhHHHHHHHHHhcc--ccCEEEecCchhhccHHHHHHHH-HHHHHHHhhcCceEEEE-ecce
Confidence 5432222 2234443 45999999999 999999999999 9999887777 888887654 5555444 3443
No 379
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.62 E-value=1.3e-15 Score=141.45 Aligned_cols=125 Identities=18% Similarity=0.270 Sum_probs=87.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC-C--CCC----CCCCc--------cc-ChhhhHhHHHHHHHcCC
Q 025844 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-A--AEN----FDYPV--------AM-DIRELISLEDVMEELGL 68 (247)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~-~--~~~----~~y~~--------~~-~v~e~i~~~~~l~~~~L 68 (247)
+++|||||+|||||+|+++|.+.|..|.|.-..... + .++ .+|.. .. +..+.-.++.++.++||
T Consensus 419 vAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgL 498 (614)
T KOG0927|consen 419 VALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGL 498 (614)
T ss_pred eeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCC
Confidence 689999999999999999999999999987543221 1 111 11100 00 12222337789999999
Q ss_pred CCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 69 GPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 69 ~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
.... +...+..++.|++ +.+|+.+.. +|.+|+|||||+ ||..+...+. +.++++ ..+++.|
T Consensus 499 tgd~-q~~p~~~LS~Gqr~rVlFa~l~~k--qP~lLlLDEPtnhLDi~tid~la-eaiNe~---~Ggvv~v 562 (614)
T KOG0927|consen 499 TGDA-QVVPMSQLSDGQRRRVLFARLAVK--QPHLLLLDEPTNHLDIETIDALA-EAINEF---PGGVVLV 562 (614)
T ss_pred Cccc-cccchhhcccccchhHHHHHHHhc--CCcEEEecCCCcCCCchhHHHHH-HHHhcc---CCceeee
Confidence 8653 3334677888765 888988888 999999999999 9999876655 555443 3345555
No 380
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.61 E-value=2.7e-16 Score=133.46 Aligned_cols=73 Identities=14% Similarity=0.082 Sum_probs=48.4
Q ss_pred HHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhc--CCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEE
Q 025844 60 EDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDN--YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC 134 (247)
Q Consensus 60 ~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~--~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii 134 (247)
.++.+.+++....... ...++.++ ++.+|++++. ..+|+++++|||++ +|+.++..+. +.++++++ +.+++
T Consensus 109 ~~~~~~~~L~~~~~~~--~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~-~~l~~~~~-~~~~i 184 (212)
T cd03274 109 GEVEQIAQMPKKSWKN--ISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVA-NYIKERTK-NAQFI 184 (212)
T ss_pred CcEEEeeccccccccc--hhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHH-HHHHHHcC-CCEEE
Confidence 4455566664332222 23455554 3888988863 11589999999999 9999999888 88888854 44544
Q ss_pred EE
Q 025844 135 AV 136 (247)
Q Consensus 135 ~v 136 (247)
++
T Consensus 185 iv 186 (212)
T cd03274 185 VI 186 (212)
T ss_pred EE
Confidence 44
No 381
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.61 E-value=1.5e-15 Score=123.59 Aligned_cols=129 Identities=19% Similarity=0.290 Sum_probs=91.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-------CcccChhhhHh-----------
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS----------- 58 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-------~~~~~v~e~i~----------- 58 (247)
+.-+|||||||||||+-.++|+++. +|+|.+.|.+... +.-+| +..+.|..+++
T Consensus 27 ~~HliGPNGaGKSTLLA~lAGm~~~-sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~~a~~ 105 (248)
T COG4138 27 ILHLVGPNGAGKSTLLARMAGMTSG-SGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTEL 105 (248)
T ss_pred EEEEECCCCccHHHHHHHHhCCCCC-CceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCchHHHHHH
Confidence 5668999999999999999999765 7999999987632 01111 11233444443
Q ss_pred HHHHHHHcCCCCCCchhhhHHhhhhh--HHHHHHHHhhcC---CCC--CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 025844 59 LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNY---LDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (247)
Q Consensus 59 ~~~~l~~~~L~~~~~~~~~~~~l~~~--~~~~la~al~~~---~~p--~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (247)
+.++...+++++...+. .+.+++| +++.+|....+. .+| +++|+|||.+ ||......+- +++.++.+.|
T Consensus 106 i~~i~~~L~l~DKL~Rs--~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLd-rll~~~c~~G 182 (248)
T COG4138 106 LNDVAGALALDDKLGRS--TNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALD-RLLSALCQQG 182 (248)
T ss_pred HHHHHhhhcccchhhhh--hhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHH-HHHHHHHhCC
Confidence 67788888888765544 4556655 335566554433 133 6899999999 9998776665 9999999999
Q ss_pred CeEEEE
Q 025844 131 FNVCAV 136 (247)
Q Consensus 131 ~~ii~v 136 (247)
.+||+.
T Consensus 183 ~~vims 188 (248)
T COG4138 183 LAIVMS 188 (248)
T ss_pred cEEEEe
Confidence 999765
No 382
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.60 E-value=7e-15 Score=128.39 Aligned_cols=73 Identities=19% Similarity=0.263 Sum_probs=56.5
Q ss_pred HHHHHHHcCCCC-CCchhhhHHhhhhhH--HHHHHHHhhcCCC---CCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCC
Q 025844 59 LEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLD---DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNF 131 (247)
Q Consensus 59 ~~~~l~~~~L~~-~~~~~~~~~~l~~~~--~~~la~al~~~~~---p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~ 131 (247)
..++++.+||+. ..++. ...++++. ++.||++++. + |+++||||||+ ||+.....+. ++++++.+.|.
T Consensus 149 ~~~~L~~vgL~~l~l~~~--~~~LSgGe~QRl~LAraL~~--~~~~p~lllLDEPtsgLD~~~~~~l~-~~L~~l~~~g~ 223 (261)
T cd03271 149 KLQTLCDVGLGYIKLGQP--ATTLSGGEAQRIKLAKELSK--RSTGKTLYILDEPTTGLHFHDVKKLL-EVLQRLVDKGN 223 (261)
T ss_pred HHHHHHHcCCchhhhcCc--cccCCHHHHHHHHHHHHHhc--CCCCCcEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCC
Confidence 456777889876 22332 23455554 4899999998 6 79999999999 9999999998 88898877788
Q ss_pred eEEEE
Q 025844 132 NVCAV 136 (247)
Q Consensus 132 ~ii~v 136 (247)
+++++
T Consensus 224 tvIii 228 (261)
T cd03271 224 TVVVI 228 (261)
T ss_pred EEEEE
Confidence 88766
No 383
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.59 E-value=8.7e-15 Score=134.74 Aligned_cols=151 Identities=17% Similarity=0.192 Sum_probs=102.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Ccc-----cChhhhHh----------H
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS----------L 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~~-----~~v~e~i~----------~ 59 (247)
-.++++||+|+||||++|.+..+...++|.|.++|+|+.+ +.++. ||+ -|+..++. +
T Consensus 565 ktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~Asneev 644 (790)
T KOG0056|consen 565 KTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEV 644 (790)
T ss_pred cEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHH
Confidence 4689999999999999999999999999999999999753 23333 222 13333332 1
Q ss_pred HHHHHH-------cCC--------CCCCchhhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 025844 60 EDVMEE-------LGL--------GPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (247)
Q Consensus 60 ~~~l~~-------~~L--------~~~~~~~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (247)
.+..+. +++ |..| ++ -...+++++++||++.. .|.+++|||.|+ ||..+.+.+. ..+
T Consensus 645 yaAAkAA~IHdrIl~fPegY~t~VGERG-Lk---LSGGEKQRVAiARtiLK--~P~iIlLDEATSALDT~tER~IQ-aaL 717 (790)
T KOG0056|consen 645 YAAAKAAQIHDRILQFPEGYNTRVGERG-LK---LSGGEKQRVAIARTILK--APSIILLDEATSALDTNTERAIQ-AAL 717 (790)
T ss_pred HHHHHHhhHHHHHhcCchhhhhhhhhcc-cc---cCCcchhhHHHHHHHhc--CCcEEEEcchhhhcCCccHHHHH-HHH
Confidence 111111 111 1111 11 01223467999999999 999999999999 9999998887 888
Q ss_pred HHHHhCCCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccch
Q 025844 124 DHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 181 (247)
Q Consensus 124 ~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~ 181 (247)
.++.+...+|++.|-+++..-+ -.|-|+++.-++++.
T Consensus 718 ~rlca~RTtIVvAHRLSTivnA---------------------D~ILvi~~G~IvErG 754 (790)
T KOG0056|consen 718 ARLCANRTTIVVAHRLSTIVNA---------------------DLILVISNGRIVERG 754 (790)
T ss_pred HHHhcCCceEEEeeeehheecc---------------------cEEEEEeCCeEeecC
Confidence 8887766667666654433221 155677777777655
No 384
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.59 E-value=1.2e-15 Score=153.49 Aligned_cols=131 Identities=18% Similarity=0.262 Sum_probs=99.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc--CCCceEEEeccCCCC----CCCCC-------CcccChhhhHh-----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS----------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~--~~~G~v~i~g~d~~~----~~~~y-------~~~~~v~e~i~----------- 58 (247)
...+++|++|||||||+++|+|-.. ..+|+|.++|.+..+ +..+| .+.+||||.+.
T Consensus 818 ~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v 897 (1391)
T KOG0065|consen 818 VLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEV 897 (1391)
T ss_pred ceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcC
Confidence 3579999999999999999999643 346899999976542 23444 23568888774
Q ss_pred --------HHHHHHHcCCCCCCchhhhH--HhhhhhHH--HHHHHHhhcCCCC-CEEEEeCCCc-ccHHhHHHHHHHHHH
Q 025844 59 --------LEDVMEELGLGPNGGLIYCM--EHLEDNLD--DWLAEELDNYLDD-DYLVFDCPGQ-IELFTHVPVLRNFVD 124 (247)
Q Consensus 59 --------~~~~l~~~~L~~~~~~~~~~--~~l~~~~~--~~la~al~~~~~p-~~lilDEPt~-LD~~~~~~~~~~ll~ 124 (247)
++++++.++|.+........ .-++-.+| +.||-.|+. +| .+|+|||||+ ||..+...++ ++++
T Consensus 898 ~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA--~P~~ilFLDEPTSGLDsqaA~~i~-~~lr 974 (1391)
T KOG0065|consen 898 SDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVA--NPSSILFLDEPTSGLDSQAAAIVM-RFLR 974 (1391)
T ss_pred CHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEec--CCceeEEecCCCCCccHHHHHHHH-HHHH
Confidence 88999999998754433221 01222232 667777777 99 8999999999 9999999999 9999
Q ss_pred HHHhCCCeEEEE
Q 025844 125 HLKSRNFNVCAV 136 (247)
Q Consensus 125 ~l~~~~~~ii~v 136 (247)
++...|.+|++.
T Consensus 975 kla~tGqtIlCT 986 (1391)
T KOG0065|consen 975 KLADTGQTILCT 986 (1391)
T ss_pred HHHhcCCeEEEE
Confidence 999899998765
No 385
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.56 E-value=7.7e-15 Score=134.07 Aligned_cols=126 Identities=22% Similarity=0.260 Sum_probs=95.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------------------------------CCCCCCc---
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------------------------ENFDYPV--- 49 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------------------------------~~~~y~~--- 49 (247)
.+++|+||||-||||-+|+|+|.+.|.=|+.. + +|.. |.+.+-|
T Consensus 101 ~V~GilG~NGiGKsTalkILaGel~PNLG~~~--~-pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~~ 177 (591)
T COG1245 101 KVVGILGPNGIGKSTALKILAGELKPNLGRYE--D-PPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVV 177 (591)
T ss_pred cEEEEEcCCCccHHHHHHHHhCccccCCCCCC--C-CCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHHh
Confidence 57999999999999999999999999877542 1 1110 1111111
Q ss_pred ccChhhhHh-------HHHHHHHcCCCCCCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHH
Q 025844 50 AMDIRELIS-------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (247)
Q Consensus 50 ~~~v~e~i~-------~~~~l~~~~L~~~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~ 119 (247)
.=++.+.+. .++++++++|....++- .+.+++| ++++||.++++ ++++++||||++ ||...+-...
T Consensus 178 KG~v~elLk~~de~g~~devve~l~L~nvl~r~--v~~LSGGELQr~aIaa~l~r--dADvY~FDEpsSyLDi~qRl~~a 253 (591)
T COG1245 178 KGKVGELLKKVDERGKFDEVVERLGLENVLDRD--VSELSGGELQRVAIAAALLR--DADVYFFDEPSSYLDIRQRLNAA 253 (591)
T ss_pred cchHHHHHHhhhhcCcHHHHHHHhcchhhhhhh--hhhcCchHHHHHHHHHHHhc--cCCEEEEcCCcccccHHHHHHHH
Confidence 114555554 78899999998765544 3456654 45899999999 999999999999 9999998888
Q ss_pred HHHHHHHHhCCCeEEEE
Q 025844 120 RNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 120 ~~ll~~l~~~~~~ii~v 136 (247)
+++++|.+.++.|++|
T Consensus 254 -r~Irel~~~~k~ViVV 269 (591)
T COG1245 254 -RVIRELAEDGKYVIVV 269 (591)
T ss_pred -HHHHHHhccCCeEEEE
Confidence 9999998777888777
No 386
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.55 E-value=1.6e-14 Score=121.47 Aligned_cols=116 Identities=12% Similarity=0.080 Sum_probs=65.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcC-CCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~-~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~ 82 (247)
+++|+||||||||||+|+++|.... ..|. .+.......+.....+.+++.|++.. +++.. ....
T Consensus 27 ~~~ltGpNg~GKSTllr~i~~~~~l~~~G~-~v~a~~~~~q~~~l~~~~~~~d~l~~-------~~s~~------~~e~- 91 (199)
T cd03283 27 GILITGSNMSGKSTFLRTIGVNVILAQAGA-PVCASSFELPPVKIFTSIRVSDDLRD-------GISYF------YAEL- 91 (199)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHHcCC-EEecCccCcccceEEEeccchhcccc-------ccChH------HHHH-
Confidence 6789999999999999999986531 1222 11111111111011234455554422 22111 0111
Q ss_pred hhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 83 DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 83 ~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
...+..+.+.=.. +|+++|+|||++ +|+.....+...+++.+.+.+.+++++
T Consensus 92 ~~~~~iL~~~~~~--~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiiv 144 (199)
T cd03283 92 RRLKEIVEKAKKG--EPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIIS 144 (199)
T ss_pred HHHHHHHHhccCC--CCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 1121112211113 899999999999 999988877646788887667776555
No 387
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.55 E-value=1.2e-14 Score=148.53 Aligned_cols=129 Identities=18% Similarity=0.210 Sum_probs=87.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Ccc-----cChhhhHh---------HHH
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS---------LED 61 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~~-----~~v~e~i~---------~~~ 61 (247)
-+||+|+.|||||||.++|..+..|.+|+|.++|.|+.. ..+.. ||+ =|+|.|++ +=+
T Consensus 1168 KVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ 1247 (1381)
T KOG0054|consen 1168 KVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWE 1247 (1381)
T ss_pred eEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHH
Confidence 489999999999999999999999999999999988753 12222 221 14555553 333
Q ss_pred HHHHcCCCC---------CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 025844 62 VMEELGLGP---------NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (247)
Q Consensus 62 ~l~~~~L~~---------~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (247)
++++.+|.+ .......-+.++-|+| +.||||+.+ ++++|++||.|+ +|+.+-.-+. +.+++-= .
T Consensus 1248 ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr--~skILvLDEATAsVD~~TD~lIQ-~tIR~~F-~ 1323 (1381)
T KOG0054|consen 1248 ALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLR--KSKILVLDEATASVDPETDALIQ-KTIREEF-K 1323 (1381)
T ss_pred HHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhc--cCCEEEEecccccCChHHHHHHH-HHHHHHh-c
Confidence 444433321 1000000123444454 899999999 999999999999 9999865544 6666532 3
Q ss_pred CCeEEEE
Q 025844 130 NFNVCAV 136 (247)
Q Consensus 130 ~~~ii~v 136 (247)
+.||+.+
T Consensus 1324 dcTVltI 1330 (1381)
T KOG0054|consen 1324 DCTVLTI 1330 (1381)
T ss_pred CCeEEEE
Confidence 6888766
No 388
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=4.8e-14 Score=127.85 Aligned_cols=133 Identities=16% Similarity=0.153 Sum_probs=86.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Ccc-----cChhhhHh----------H
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS----------L 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~~-----~~v~e~i~----------~ 59 (247)
-.++++||+|+||||+++.+..++.+++|.|.++|+|... .-++. ||+ -++..++. +
T Consensus 290 ~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev 369 (497)
T COG5265 290 KTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEV 369 (497)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHH
Confidence 3589999999999999999999999999999999988632 11111 111 12222222 1
Q ss_pred HHHHHHcC------CCCCC-----chhhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844 60 EDVMEELG------LGPNG-----GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (247)
Q Consensus 60 ~~~l~~~~------L~~~~-----~~~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (247)
....+... -.|.| +.+.-.-...+++++++||.++. +|++++|||.|+ ||..+.+.+. .-++.+.
T Consensus 370 ~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk--~p~il~~deatsaldt~te~~iq-~~l~~~~ 446 (497)
T COG5265 370 GAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILK--NPPILILDEATSALDTHTEQAIQ-AALREVS 446 (497)
T ss_pred HHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhc--CCCEEEEehhhhHhhhhHHHHHH-HHHHHHh
Confidence 11111111 11211 00100112334567999999999 999999999999 9999988877 7778875
Q ss_pred hCCCeEEEEEe
Q 025844 128 SRNFNVCAVYL 138 (247)
Q Consensus 128 ~~~~~ii~v~l 138 (247)
+...++++.|-
T Consensus 447 ~~rttlviahr 457 (497)
T COG5265 447 AGRTTLVIAHR 457 (497)
T ss_pred CCCeEEEEeeh
Confidence 54444544453
No 389
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.50 E-value=4.9e-14 Score=118.36 Aligned_cols=106 Identities=12% Similarity=0.169 Sum_probs=65.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH--------hCCcCCCceEEEeccCCCCCCCCC-CcccChhhhHhHHHHHHHcCCCCCCch
Q 025844 4 AQLVIGPAGSGKSTYCSSLY--------RHCETVRRTMHIVNLDPAAENFDY-PVAMDIRELISLEDVMEELGLGPNGGL 74 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~--------g~l~~~~G~v~i~g~d~~~~~~~y-~~~~~v~e~i~~~~~l~~~~L~~~~~~ 74 (247)
+++|+||||||||||++++. |..-|....+ .++| .+.++ .++.....
T Consensus 30 ~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~----------~~~~~~~~~~------------~lg~~~~l-- 85 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS----------SLPVFENIFA------------DIGDEQSI-- 85 (200)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc----------cCcCccEEEE------------ecCchhhh--
Confidence 58999999999999999998 4333322111 2333 12111 11111000
Q ss_pred hhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 75 IYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 75 ~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
...+..++.+++ ..++++ +. +|+++++|||++ +|+..+..+...+++.+++.+.+++++
T Consensus 86 ~~~~s~fs~g~~~~~~i~~~-~~--~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~ 147 (200)
T cd03280 86 EQSLSTFSSHMKNIARILQH-AD--PDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIAT 147 (200)
T ss_pred hcCcchHHHHHHHHHHHHHh-CC--CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 000123444443 444444 35 899999999999 999999888756788887667777555
No 390
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.50 E-value=2.8e-13 Score=113.73 Aligned_cols=125 Identities=10% Similarity=0.049 Sum_probs=71.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCC-----ce----EEEeccCCCC-----CCCCCCc-ccChhhhHhHHHHHHHcCC
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVR-----RT----MHIVNLDPAA-----ENFDYPV-AMDIRELISLEDVMEELGL 68 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~-----G~----v~i~g~d~~~-----~~~~y~~-~~~v~e~i~~~~~l~~~~L 68 (247)
+.+|+|||||||||++.+|...+.... |. +.-.|.+.+. ++-...+ .....+.-.++++++.
T Consensus 23 l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~--- 99 (198)
T cd03276 23 VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQDMARSFLTS--- 99 (198)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHHHHHHHhcc---
Confidence 568999999999999999985433221 10 0000100000 0000001 0111112235666665
Q ss_pred CCCCchhhhHHhhhhhHH--HHHHHHh----hcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC--C-CeEEEE
Q 025844 69 GPNGGLIYCMEHLEDNLD--DWLAEEL----DNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR--N-FNVCAV 136 (247)
Q Consensus 69 ~~~~~~~~~~~~l~~~~~--~~la~al----~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~--~-~~ii~v 136 (247)
....... ...++.+++ +.+|+++ +. +|+++|+|||++ +|+..+..+. ++++++.+. + .+++++
T Consensus 100 ~~~~~~~--~~~lS~G~k~r~~ia~al~~~~~~--~p~illlDEP~~glD~~~~~~~~-~~l~~~~~~~~~~~~iii~ 172 (198)
T cd03276 100 NKAAVRD--VKTLSGGERSFSTVCLLLSLWEVM--ESPFRCLDEFDVFMDMVNRKIST-DLLVKEAKKQPGRQFIFIT 172 (198)
T ss_pred ccccCCc--ccccChhHHHHHHHHHHHHHhccc--CCCEEEecCcccccCHHHHHHHH-HHHHHHHhcCCCcEEEEEE
Confidence 2221111 234555544 7888888 46 999999999999 9999999998 777776432 3 345444
No 391
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.49 E-value=1.3e-13 Score=128.89 Aligned_cols=144 Identities=15% Similarity=0.191 Sum_probs=108.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC----------CcccChhhhHh------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY----------PVAMDIRELIS------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y----------~~~~~v~e~i~------ 58 (247)
-+++|.|--|||+|=++++|.|.-++.+|+|.++|.+... ..+.| .+.++|.+|++
T Consensus 286 EIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~ 365 (500)
T COG1129 286 EILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRR 365 (500)
T ss_pred cEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhh
Confidence 4789999999999999999999999999999999975432 12333 23556777765
Q ss_pred ---------------HHHHHHHcCCCCCCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 025844 59 ---------------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (247)
Q Consensus 59 ---------------~~~~l~~~~L~~~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (247)
++++.+.+++........ ...+++| +++.||+.|+. +|++|||||||. +|.-++.++.
T Consensus 366 ~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~-v~~LSGGNQQKVvlarwL~~--~p~vLilDEPTRGIDVGAK~eIy- 441 (500)
T COG1129 366 FSRRGLIDRRKERALAERYIRRLRIKTPSPEQP-IGTLSGGNQQKVVLARWLAT--DPKVLILDEPTRGIDVGAKAEIY- 441 (500)
T ss_pred hccccccChHHHHHHHHHHHHhcCcccCCccch-hhcCCchhhhhHHHHHHHhc--CCCEEEECCCCcCcccchHHHHH-
Confidence 455555666543322111 2345442 44999999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCeEEEEEecccccccchhHHhhhh
Q 025844 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC 154 (247)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~ 154 (247)
+++++++++|.+|+++. ..+.+....|+++
T Consensus 442 ~li~~lA~~G~ail~iS----SElpEll~~~DRI 471 (500)
T COG1129 442 RLIRELAAEGKAILMIS----SELPELLGLSDRI 471 (500)
T ss_pred HHHHHHHHCCCEEEEEe----CChHHHHhhCCEE
Confidence 99999999999998773 5566666666633
No 392
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.48 E-value=1.3e-13 Score=131.19 Aligned_cols=128 Identities=16% Similarity=0.147 Sum_probs=89.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC-C-CCCCCCCCcccChhhhHh------------HHHHHHHcCCCC
Q 025844 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-P-AAENFDYPVAMDIRELIS------------LEDVMEELGLGP 70 (247)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d-~-~~~~~~y~~~~~v~e~i~------------~~~~l~~~~L~~ 70 (247)
+.|.||||||||||+|+|+|+-+.-+|+|..-... . --..-||.|.-+.||.+. +.++|.++||++
T Consensus 422 llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~ 501 (604)
T COG4178 422 LLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGD 501 (604)
T ss_pred EEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHH
Confidence 57999999999999999999999999998765211 0 012234533335555553 778889999886
Q ss_pred CCchhhh----HHhhh--hhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 71 NGGLIYC----MEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 71 ~~~~~~~----~~~l~--~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
....... -..++ +++++++||.+.+ +|++++|||-|+ ||+.+...++ +++++-- .+.++|.|
T Consensus 502 L~~rl~~~~~W~~vLS~GEqQRlafARilL~--kP~~v~LDEATsALDe~~e~~l~-q~l~~~l-p~~tvISV 570 (604)
T COG4178 502 LAERLDEEDRWDRVLSGGEQQRLAFARLLLH--KPKWVFLDEATSALDEETEDRLY-QLLKEEL-PDATVISV 570 (604)
T ss_pred HHHHHhccCcHhhhcChhHHHHHHHHHHHHc--CCCEEEEecchhccChHHHHHHH-HHHHhhC-CCCEEEEe
Confidence 4322110 11233 3456999999999 999999999999 9999998877 5544411 46777766
No 393
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.46 E-value=2.7e-13 Score=138.82 Aligned_cols=131 Identities=20% Similarity=0.208 Sum_probs=99.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHh---------HHHHHHHcCCCC---
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELIS---------LEDVMEELGLGP--- 70 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~---------~~~~l~~~~L~~--- 70 (247)
..++|+||-|||||+|+.+|.|.++..+|++.+.|.-.-....||-++-||||||- ++++++.+.|.+
T Consensus 548 ~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle 627 (1381)
T KOG0054|consen 548 QLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLE 627 (1381)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHh
Confidence 35899999999999999999999999999999998622122234455779999985 677888776643
Q ss_pred ---CCchhhh---HHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 71 ---NGGLIYC---MEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 71 ---~~~~~~~---~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
.|++..- --.+++|+ |+.||||+-+ ++|+++||.|.+ +|....+.++++.++.+-+ ++|+|.|
T Consensus 628 ~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~--~adIYLLDDplSAVDahvg~~if~~ci~~~L~-~KT~ILV 699 (1381)
T KOG0054|consen 628 ILPFGDLTEIGERGINLSGGQKQRISLARAVYQ--DADIYLLDDPLSAVDAHVGKHIFEECIRGLLR-GKTVILV 699 (1381)
T ss_pred hcCCCCcceecCCccCCcHhHHHHHHHHHHHhc--cCCEEEEcCcchhhhHhhhHHHHHHHHHhhhc-CCEEEEE
Confidence 2211100 01355555 4899999999 999999999999 9999999999888866544 5666655
No 394
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=2.3e-13 Score=124.11 Aligned_cols=123 Identities=18% Similarity=0.214 Sum_probs=81.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCC-c--------ccChhhhH---------hHHHHHH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYP-V--------AMDIRELI---------SLEDVME 64 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~-~--------~~~v~e~i---------~~~~~l~ 64 (247)
--++|+||||.|||||++.+.|-+.|+.|+.+-+-. -.++++ + .-+.-+++ .++..+-
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhr----L~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG 689 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHR----LRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLG 689 (807)
T ss_pred ceeEEECCCCccHHHHHHHHhcCCCCCcchhhccce----eeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhh
Confidence 357999999999999999999999999998754321 011110 0 01112222 2566677
Q ss_pred HcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 65 ELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 65 ~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
.+||......+. +..+++++. +++|...+. .|++|||||||+ ||+.+...+. +.|+.. +| .||+|
T Consensus 690 ~fGL~sHAHTik-ikdLSGGQKaRValaeLal~--~PDvlILDEPTNNLDIESIDALa-EAIney--~G-gVi~V 757 (807)
T KOG0066|consen 690 TFGLASHAHTIK-IKDLSGGQKARVALAELALG--GPDVLILDEPTNNLDIESIDALA-EAINEY--NG-GVIMV 757 (807)
T ss_pred hhhhhhccceEe-eeecCCcchHHHHHHHHhcC--CCCEEEecCCCCCcchhhHHHHH-HHHHhc--cC-cEEEE
Confidence 777765543332 234666654 777766666 999999999999 9999887766 666555 23 45555
No 395
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.44 E-value=1.5e-13 Score=114.10 Aligned_cols=115 Identities=13% Similarity=0.154 Sum_probs=69.5
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844 4 AQLVIGPAGSGKSTYCSSLY-RHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~-g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~ 82 (247)
+++|.||||||||||+|.+. ..+.+..|....- ..-.+++. ++++..++........ ...++
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a----~~~~~~~~-----------d~il~~~~~~d~~~~~--~s~fs 63 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPA----ESAELPVF-----------DRIFTRIGASDSLAQG--LSTFM 63 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeee----hheEeccc-----------ceEEEEeCCCCchhcc--ccHHH
Confidence 36799999999999999998 4444444432211 01122221 1122233332221111 23455
Q ss_pred hhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025844 83 DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (247)
Q Consensus 83 ~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v 136 (247)
.++ ..+++++....+|+++|+|||+. +|+.....+...+++.+.+. +.+++++
T Consensus 64 ~~~-~~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~ 118 (185)
T smart00534 64 VEM-KETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFA 118 (185)
T ss_pred HHH-HHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 555 44555555444899999999999 99998888776788888663 6666544
No 396
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.41 E-value=2.7e-13 Score=113.99 Aligned_cols=114 Identities=14% Similarity=0.100 Sum_probs=64.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC-CcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~-l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~ 82 (247)
.++|+||||||||||++++++. +.+..|.... . ....+++... .+..++........ +..+.
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-~---~~~~i~~~dq-----------i~~~~~~~d~i~~~--~s~~~ 93 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-A---ESASIPLVDR-----------IFTRIGAEDSISDG--RSTFM 93 (202)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-c---cccccCCcCE-----------EEEEecCcccccCC--ceeHH
Confidence 6899999999999999999943 3233343211 0 0112222110 00011111000000 11222
Q ss_pred hhH-HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 83 DNL-DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 83 ~~~-~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
.++ +...+.+.+. +|+++|+|||++ +|+.....+...+++.+.+.+.+++++
T Consensus 94 ~e~~~l~~i~~~~~--~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~ 147 (202)
T cd03243 94 AELLELKEILSLAT--PRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFA 147 (202)
T ss_pred HHHHHHHHHHHhcc--CCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 333 1222334445 999999999999 999988887756778776667777655
No 397
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=1.1e-12 Score=121.59 Aligned_cols=128 Identities=21% Similarity=0.195 Sum_probs=88.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCc-------cc--ChhhhH----------hHHHHHHH
Q 025844 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPV-------AM--DIRELI----------SLEDVMEE 65 (247)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~-------~~--~v~e~i----------~~~~~l~~ 65 (247)
++++|+||+||||+++++.|-++|..|.+.+.+. ..+.|+. +. +.-+.. .++.-+..
T Consensus 393 i~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r----~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~ 468 (582)
T KOG0062|consen 393 ISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPR----LRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGS 468 (582)
T ss_pred hheeccCchhHHHHHHHHhccCCcccceeeeccc----ceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 5789999999999999999999999998776642 2333421 11 111111 16677788
Q ss_pred cCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccc
Q 025844 66 LGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ 142 (247)
Q Consensus 66 ~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~ 142 (247)
+|+....+... +..+++|+. +++|..... +|.+|+|||||+ ||..+...+. +.++..+..||+|. ||.+
T Consensus 469 ~Gl~g~la~~s-i~~LSGGQKsrvafA~~~~~--~PhlLVLDEPTNhLD~dsl~AL~----~Al~~F~GGVv~VS-Hd~~ 540 (582)
T KOG0062|consen 469 FGLSGELALQS-IASLSGGQKSRVAFAACTWN--NPHLLVLDEPTNHLDRDSLGALA----KALKNFNGGVVLVS-HDEE 540 (582)
T ss_pred cCCCchhhhcc-ccccCCcchhHHHHHHHhcC--CCcEEEecCCCccccHHHHHHHH----HHHHhcCCcEEEEE-CcHH
Confidence 89987665554 566888875 778877777 999999999999 9988765444 55555444566663 4544
Q ss_pred cc
Q 025844 143 FI 144 (247)
Q Consensus 143 ~~ 144 (247)
++
T Consensus 541 fi 542 (582)
T KOG0062|consen 541 FI 542 (582)
T ss_pred HH
Confidence 43
No 398
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.40 E-value=2e-12 Score=120.37 Aligned_cols=117 Identities=21% Similarity=0.316 Sum_probs=68.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCcCCCceEEE--ecc--CCCC---------------CCCCCC-----c---cc------
Q 025844 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHI--VNL--DPAA---------------ENFDYP-----V---AM------ 51 (247)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i--~g~--d~~~---------------~~~~y~-----~---~~------ 51 (247)
++|+|||||||||++++++|-..|..-++-+ ... .|.. ..+.|. + +.
T Consensus 104 ygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~ 183 (614)
T KOG0927|consen 104 YGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELD 183 (614)
T ss_pred EEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHH
Confidence 6899999999999999999988775433322 111 1100 000000 0 00
Q ss_pred Chhhh--------Hh--HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 025844 52 DIREL--------IS--LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (247)
Q Consensus 52 ~v~e~--------i~--~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (247)
++.+. +. +..+|..+|..+....... ..+++|++ ++|||+|.. +|++|+|||||+ ||+.+...+
T Consensus 184 ~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~-~~~SgGwrmR~aLAr~Lf~--kP~LLLLDEPtnhLDleA~~wL 260 (614)
T KOG0927|consen 184 ELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKV-KDLSGGWRMRAALARALFQ--KPDLLLLDEPTNHLDLEAIVWL 260 (614)
T ss_pred HHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHh-hccCchHHHHHHHHHHHhc--CCCEEEecCCccCCCHHHHHHH
Confidence 00000 00 3334444444433322222 34666654 899999999 999999999999 999987554
Q ss_pred HHHHHHH
Q 025844 119 LRNFVDH 125 (247)
Q Consensus 119 ~~~ll~~ 125 (247)
- +.+.+
T Consensus 261 e-e~L~k 266 (614)
T KOG0927|consen 261 E-EYLAK 266 (614)
T ss_pred H-HHHHh
Confidence 3 44433
No 399
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.37 E-value=2.3e-12 Score=107.86 Aligned_cols=140 Identities=16% Similarity=0.262 Sum_probs=94.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCC----CceEEEeccCC-----CC------CCCCC---------CcccChh-hhH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETV----RRTMHIVNLDP-----AA------ENFDY---------PVAMDIR-ELI 57 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~----~G~v~i~g~d~-----~~------~~~~y---------~~~~~v~-e~i 57 (247)
-+-+++|.+|||||-..|+|+|..+.. .-..++++.|. .. +++.. .|.-+|. +.+
T Consensus 34 Ei~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlI 113 (330)
T COG4170 34 EIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLI 113 (330)
T ss_pred eeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHH
Confidence 467899999999999999999987642 22344444332 11 11111 1111111 111
Q ss_pred h---------------------HHHHHHHcCCCCCCchhhhHHhhhh------hHHHHHHHHhhcCCCCCEEEEeCCCc-
Q 025844 58 S---------------------LEDVMEELGLGPNGGLIYCMEHLED------NLDDWLAEELDNYLDDDYLVFDCPGQ- 109 (247)
Q Consensus 58 ~---------------------~~~~l~~~~L~~~~~~~~~~~~l~~------~~~~~la~al~~~~~p~~lilDEPt~- 109 (247)
. +-+.+.++|+....+... .++. ++.+.||.|++. +|++||.||||+
T Consensus 114 q~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~---SYP~ElTeGE~QKVMIA~A~An--qPrLLIADEPTN~ 188 (330)
T COG4170 114 QNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR---SYPYELTEGECQKVMIAIALAN--QPRLLIADEPTNS 188 (330)
T ss_pred hhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHH---hCcchhccCcceeeeeehhhcc--CCceEeccCCCcc
Confidence 1 567888888877654432 2222 234889999999 999999999999
Q ss_pred ccHHhHHHHHHHHHHHHHhC-CCeEEEEEecccccccchhHHhh
Q 025844 110 IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 110 LD~~~~~~~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+|+.++.+++ +++.++.+. +.+++.+ +|.+...+.+++
T Consensus 189 ~e~~Tq~Qif-RLLs~mNQn~~TtILL~----s~Dl~~is~W~d 227 (330)
T COG4170 189 MEPTTQAQIF-RLLSRLNQNSNTTILLI----SHDLQMISQWAD 227 (330)
T ss_pred cCccHHHHHH-HHHHHhhccCCceEEEE----cccHHHHHHHhh
Confidence 9999999999 999999864 6666433 577776777766
No 400
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.36 E-value=2.9e-12 Score=108.83 Aligned_cols=55 Identities=9% Similarity=0.032 Sum_probs=39.3
Q ss_pred HhhhhhHH--HHHH----HHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-C-CeEEEE
Q 025844 79 EHLEDNLD--DWLA----EELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N-FNVCAV 136 (247)
Q Consensus 79 ~~l~~~~~--~~la----~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~-~~ii~v 136 (247)
..++.+++ ..++ ++++. +|+++|+|||++ +|+.....++ +++.++.++ | .+++++
T Consensus 125 ~~LS~G~~q~~~i~~~la~~~~~--~p~llllDEP~~~LD~~~~~~i~-~~l~~~~~~~g~~~viii 188 (213)
T cd03277 125 HHQSGGERSVSTMLYLLSLQELT--RCPFRVVDEINQGMDPTNERKVF-DMLVETACKEGTSQYFLI 188 (213)
T ss_pred hhccccHHHHHHHHHHHHHHhcc--CCCEEEEecccccCCHHHHHHHH-HHHHHHhhcCCCceEEEE
Confidence 45666654 2222 33346 999999999999 9999999998 888777654 5 355555
No 401
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.34 E-value=7.4e-12 Score=104.48 Aligned_cols=129 Identities=16% Similarity=0.254 Sum_probs=87.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-----------------CcccChhhhHh--
Q 025844 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-----------------PVAMDIRELIS-- 58 (247)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-----------------~~~~~v~e~i~-- 58 (247)
..++|.||||||||+|+++|-.-.-.|.|.+.|.++-. ..+.| .-++++...+.
T Consensus 43 cLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV 122 (291)
T KOG2355|consen 43 CLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGV 122 (291)
T ss_pred EEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEecccccccccccccccccccccHHHHHhhc
Confidence 36899999999999999999877777999999987632 11222 11233333221
Q ss_pred -------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH-
Q 025844 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK- 127 (247)
Q Consensus 59 -------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~- 127 (247)
-++.++.+.+. ....|+..+.|++ +.|+..|+. .=++|+|||-|- ||..++..++ +++++-.
T Consensus 123 ~g~dp~Rre~LI~iLDId----l~WRmHkvSDGqrRRVQicMGLL~--PfkVLLLDEVTVDLDVlARadLL-eFlkeEce 195 (291)
T KOG2355|consen 123 GGDDPERREKLIDILDID----LRWRMHKVSDGQRRRVQICMGLLK--PFKVLLLDEVTVDLDVLARADLL-EFLKEECE 195 (291)
T ss_pred cCCChhHhhhhhhheecc----ceEEEeeccccchhhhHHHHhccc--ceeEEEeeeeEeehHHHHHHHHH-HHHHHHHh
Confidence 12233333322 2233556666664 788888877 779999999998 9999999998 7777654
Q ss_pred hCCCeEEEE-Eecc
Q 025844 128 SRNFNVCAV-YLLD 140 (247)
Q Consensus 128 ~~~~~ii~v-~l~d 140 (247)
+.|.+|+.. |++|
T Consensus 196 ~RgatIVYATHIFD 209 (291)
T KOG2355|consen 196 QRGATIVYATHIFD 209 (291)
T ss_pred hcCcEEEEEeeecc
Confidence 457787654 5555
No 402
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.32 E-value=8.2e-12 Score=101.45 Aligned_cols=109 Identities=16% Similarity=0.105 Sum_probs=66.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCC-CcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-PVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y-~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~ 82 (247)
+++|+|||||||||+++.+....-...|.+... .+. ..++ .+...+. . +....+ ++
T Consensus 23 ~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~-~~~---~~g~~~~~~~~~----~--i~~~~~-------------lS 79 (162)
T cd03227 23 LTIITGPNGSGKSTILDAIGLALGGAQSATRRR-SGV---KAGCIVAAVSAE----L--IFTRLQ-------------LS 79 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcchhhhcc-Ccc---cCCCcceeeEEE----E--ehheee-------------cc
Confidence 678999999999999999876655554443331 111 1111 1111100 0 111111 22
Q ss_pred hhH--HHHHHHHhhcCC--CCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 83 DNL--DDWLAEELDNYL--DDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 83 ~~~--~~~la~al~~~~--~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
.++ +..+++++.... +|+++|+|||+. +|+.....+. +.+.++.+++.+++++
T Consensus 80 ~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~-~~l~~~~~~~~~vii~ 137 (162)
T cd03227 80 GGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALA-EAILEHLVKGAQVIVI 137 (162)
T ss_pred ccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEE
Confidence 222 277888887522 689999999999 9999999988 6665554446666544
No 403
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.32 E-value=1.1e-11 Score=102.48 Aligned_cols=50 Identities=10% Similarity=0.071 Sum_probs=40.0
Q ss_pred HHHHHHHhhc--CCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 86 DDWLAEELDN--YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 86 ~~~la~al~~--~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
++.++++++. ..+|+++|+|||++ +|+.....+. +.++++.+.|.+++++
T Consensus 102 r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~-~~L~~~~~~g~tiIii 154 (178)
T cd03239 102 LSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVS-DMIKEMAKHTSQFIVI 154 (178)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 3788888752 12899999999999 9999999988 7888876666777655
No 404
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.31 E-value=7.9e-12 Score=106.17 Aligned_cols=106 Identities=15% Similarity=0.166 Sum_probs=61.5
Q ss_pred EEEEEcCCCCcHHHHHHHHH--hCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844 4 AQLVIGPAGSGKSTYCSSLY--RHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~--g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l 81 (247)
.++|.||||+|||||+|.+. +++ +..|.+.... . -.++|.... +.. ++...........+
T Consensus 31 ~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-~---~~~~~~d~i-----------~~~--l~~~~si~~~~S~f 92 (213)
T cd03281 31 IMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-S---ATIGLVDKI-----------FTR--MSSRESVSSGQSAF 92 (213)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-C---cEEeeeeee-----------eee--eCCccChhhccchH
Confidence 57899999999999999998 333 4455543321 1 112221100 000 01110000001122
Q ss_pred hhhH-HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 025844 82 EDNL-DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (247)
Q Consensus 82 ~~~~-~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (247)
...+ ++.++.+++. +|+++|+|||+. +|+.....+...+++.+.+.
T Consensus 93 ~~el~~l~~~l~~~~--~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~ 140 (213)
T cd03281 93 MIDLYQVSKALRLAT--RRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKR 140 (213)
T ss_pred HHHHHHHHHHHHhCC--CCcEEEeccccCCCCHHHHHHHHHHHHHHHHhc
Confidence 2223 2566666677 999999999999 99987666654788888654
No 405
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.29 E-value=6.6e-12 Score=105.98 Aligned_cols=114 Identities=15% Similarity=0.185 Sum_probs=69.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcC-CCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~-~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~ 82 (247)
+++|+||||+||||++++++++.-- .-|- .+ |+. ...+++. ++++..++...+.... ...++
T Consensus 31 ~~~l~G~n~~GKstll~~i~~~~~la~~G~-~v----pa~-----~~~l~~~-----d~I~~~~~~~d~~~~~--~S~fs 93 (204)
T cd03282 31 FHIITGPNMSGKSTYLKQIALLAIMAQIGC-FV----PAE-----YATLPIF-----NRLLSRLSNDDSMERN--LSTFA 93 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHcCC-Cc----chh-----hcCccCh-----hheeEecCCccccchh--hhHHH
Confidence 5789999999999999999976411 1110 00 111 1122222 2334445554332222 23455
Q ss_pred hhHH-HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 83 DNLD-DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 83 ~~~~-~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
.+++ ...+.+++. +|+++|+|||+. +|+.....+...+++.+.+.+.+++++
T Consensus 94 ~e~~~~~~il~~~~--~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~ 147 (204)
T cd03282 94 SEMSETAYILDYAD--GDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFA 147 (204)
T ss_pred HHHHHHHHHHHhcC--CCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 5553 222233445 899999999998 999877776657888887777777554
No 406
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.29 E-value=2.9e-11 Score=127.03 Aligned_cols=71 Identities=20% Similarity=0.193 Sum_probs=55.6
Q ss_pred HHHHHcCCCCC-CchhhhHHhhhhhH--HHHHHHHhh---cCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeE
Q 025844 61 DVMEELGLGPN-GGLIYCMEHLEDNL--DDWLAEELD---NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (247)
Q Consensus 61 ~~l~~~~L~~~-~~~~~~~~~l~~~~--~~~la~al~---~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~i 133 (247)
++++.+|++.. .+.. ...+++++ ++.||++++ . +|+++||||||+ ||+.....++ ++++++++.|.++
T Consensus 791 ~~L~~vGL~~l~l~q~--~~tLSGGE~QRV~LAraL~~~~~--~P~LLILDEPTsGLD~~~~~~Ll-~lL~~L~~~G~TV 865 (1809)
T PRK00635 791 HALCSLGLDYLPLGRP--LSSLSGGEIQRLKLAYELLAPSK--KPTLYVLDEPTTGLHTHDIKALI-YVLQSLTHQGHTV 865 (1809)
T ss_pred HHHHHcCCcchhhcCc--cccCCHHHHHHHHHHHHHhhcCC--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCEE
Confidence 46777888753 2222 23466554 489999997 5 899999999999 9999999999 9999998778888
Q ss_pred EEE
Q 025844 134 CAV 136 (247)
Q Consensus 134 i~v 136 (247)
+++
T Consensus 866 IiI 868 (1809)
T PRK00635 866 VII 868 (1809)
T ss_pred EEE
Confidence 766
No 407
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.27 E-value=2.7e-11 Score=110.12 Aligned_cols=131 Identities=18% Similarity=0.189 Sum_probs=98.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC--------CcCCCceEEEeccCCCCCCCC--CCc---ccChhhhHh--------HHH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH--------CETVRRTMHIVNLDPAAENFD--YPV---AMDIRELIS--------LED 61 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~--------l~~~~G~v~i~g~d~~~~~~~--y~~---~~~v~e~i~--------~~~ 61 (247)
-+++|+|++||||||+++++.|. ++|++|.|.+.-...++ .+| +.+ ..++.+++. ..+
T Consensus 410 dvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a-~iPge~Ep~f~~~tilehl~s~tGD~~~Ave 488 (593)
T COG2401 410 DVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSA-LIPGEYEPEFGEVTILEHLRSKTGDLNAAVE 488 (593)
T ss_pred CeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhh-ccCcccccccCchhHHHHHhhccCchhHHHH
Confidence 36899999999999999999995 47899999875433221 111 222 334555543 678
Q ss_pred HHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEEE
Q 025844 62 VMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVY 137 (247)
Q Consensus 62 ~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v~ 137 (247)
++++.|++..--.......++.++. ..||.+++. .|.+++.||-.+ ||+.+...+. +-+.++++ .|.|+++++
T Consensus 489 ILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllae--rpn~~~iDEF~AhLD~~TA~rVA-rkiselaRe~giTlivvT 565 (593)
T COG2401 489 ILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAE--RPNVLLIDEFAAHLDELTAVRVA-RKISELAREAGITLIVVT 565 (593)
T ss_pred HHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhc--CCCcEEhhhhhhhcCHHHHHHHH-HHHHHHHHHhCCeEEEEe
Confidence 9999999876555555667777765 889999999 999999999999 9999999998 55667764 588877663
No 408
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.26 E-value=4.3e-11 Score=105.03 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=35.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~ 41 (247)
..++|+||||||||||++.++|.+.|.+|++.++|.+..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~ 150 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVG 150 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEee
Confidence 357999999999999999999999999999999997764
No 409
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.25 E-value=8.4e-11 Score=118.33 Aligned_cols=72 Identities=19% Similarity=0.247 Sum_probs=55.1
Q ss_pred HHHHHHcCCCCC-CchhhhHHhhhhhH--HHHHHHHhhcCCCC---CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCe
Q 025844 60 EDVMEELGLGPN-GGLIYCMEHLEDNL--DDWLAEELDNYLDD---DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN 132 (247)
Q Consensus 60 ~~~l~~~~L~~~-~~~~~~~~~l~~~~--~~~la~al~~~~~p---~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ 132 (247)
.+.++.+||+.. .++. ...+++|. ++.||++++. +| +++|||||++ ||+.....++ ++++++.+.|.+
T Consensus 811 l~~L~~vgL~~l~l~~~--~~tLSgGEkQRl~LAraL~~--~p~~~~llILDEPtsGLD~~~~~~L~-~~L~~l~~~G~T 885 (943)
T PRK00349 811 LQTLVDVGLGYIKLGQP--ATTLSGGEAQRVKLAKELSK--RSTGKTLYILDEPTTGLHFEDIRKLL-EVLHRLVDKGNT 885 (943)
T ss_pred HHHHHHCCCCcccccCC--cccCCHHHHHHHHHHHHHhc--CCCCCeEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCE
Confidence 345666788642 2222 23466554 4899999998 88 9999999999 9999999999 889998777888
Q ss_pred EEEE
Q 025844 133 VCAV 136 (247)
Q Consensus 133 ii~v 136 (247)
++++
T Consensus 886 VIii 889 (943)
T PRK00349 886 VVVI 889 (943)
T ss_pred EEEE
Confidence 8766
No 410
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.21 E-value=5.3e-11 Score=100.59 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=36.1
Q ss_pred HHHHHHhhcCCCCCEEEEeCCC-----c-ccHHhHHHHHHHHHHHHHh
Q 025844 87 DWLAEELDNYLDDDYLVFDCPG-----Q-IELFTHVPVLRNFVDHLKS 128 (247)
Q Consensus 87 ~~la~al~~~~~p~~lilDEPt-----~-LD~~~~~~~~~~ll~~l~~ 128 (247)
.+||+++.. +|+++++|||| + ||+..+..+. ++++++++
T Consensus 161 ~~ia~~l~~--~p~~~~ldEp~~~~~~~~ld~~~~~~~~-~~~~~~~~ 205 (215)
T PTZ00132 161 LWLARRLTN--DPNLVFVGAPALAPEEIQIDPELVAQAE-KELQAAAN 205 (215)
T ss_pred HHHHHHHhh--cccceecCCcccCCCccccCHHHHHHHH-HHHHHHhh
Confidence 789999999 99999999999 9 9999999998 88888854
No 411
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.20 E-value=1.5e-10 Score=116.23 Aligned_cols=74 Identities=19% Similarity=0.211 Sum_probs=54.1
Q ss_pred HHHHHHcCCCCC-CchhhhHHhhhhhH--HHHHHHHhhcC-CCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEE
Q 025844 60 EDVMEELGLGPN-GGLIYCMEHLEDNL--DDWLAEELDNY-LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC 134 (247)
Q Consensus 60 ~~~l~~~~L~~~-~~~~~~~~~l~~~~--~~~la~al~~~-~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii 134 (247)
.++++.+||+.. .++. ...+++|. ++.||++++.- .+|+++|||||++ ||+.....+. ++++++.+.|.+++
T Consensus 809 l~~L~~~gL~~l~l~~~--~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~-~~L~~l~~~G~TVI 885 (924)
T TIGR00630 809 LQTLCDVGLGYIKLGQP--ATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLL-EVLQRLVDQGNTVV 885 (924)
T ss_pred HHHHHHcCCCchhhcCc--cccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEE
Confidence 345666777642 2222 24466654 48899999861 1489999999999 9999999998 88999877788887
Q ss_pred EE
Q 025844 135 AV 136 (247)
Q Consensus 135 ~v 136 (247)
++
T Consensus 886 vi 887 (924)
T TIGR00630 886 VI 887 (924)
T ss_pred EE
Confidence 66
No 412
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.20 E-value=6.3e-11 Score=101.25 Aligned_cols=110 Identities=12% Similarity=0.113 Sum_probs=63.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC-cCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHC-ETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l-~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~ 82 (247)
+++|.||||||||||++.++-.. -...|- .-|+.. ..+. -+++++..+++.+.... ....+.
T Consensus 32 ~~~l~G~n~~GKstll~~i~~~~~la~~g~-----~vpa~~-----~~~~-----~~~~il~~~~l~d~~~~--~lS~~~ 94 (222)
T cd03285 32 FLIITGPNMGGKSTYIRQIGVIVLMAQIGC-----FVPCDS-----ADIP-----IVDCILARVGASDSQLK--GVSTFM 94 (222)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHHhCC-----CcCccc-----EEEe-----ccceeEeeeccccchhc--CcChHH
Confidence 68999999999999999987320 000110 001100 0001 13445566666544311 122333
Q ss_pred hhHHHHHHHHh--hcCCCCCEEEEeCC---Cc-ccHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 025844 83 DNLDDWLAEEL--DNYLDDDYLVFDCP---GQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV 136 (247)
Q Consensus 83 ~~~~~~la~al--~~~~~p~~lilDEP---t~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v 136 (247)
.++ ..+++++ +. +|+++|+||| |+ +|+.+... .+++.+.+ .+.+++++
T Consensus 95 ~e~-~~~a~il~~~~--~~sLvLLDEp~~gT~~lD~~~~~~---~il~~l~~~~~~~vlis 149 (222)
T cd03285 95 AEM-LETAAILKSAT--ENSLIIIDELGRGTSTYDGFGLAW---AIAEYIATQIKCFCLFA 149 (222)
T ss_pred HHH-HHHHHHHHhCC--CCeEEEEecCcCCCChHHHHHHHH---HHHHHHHhcCCCeEEEE
Confidence 444 6667677 55 9999999999 88 99987743 44566654 35666444
No 413
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.19 E-value=4.9e-11 Score=101.53 Aligned_cols=108 Identities=14% Similarity=0.128 Sum_probs=58.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcC-CCceEEEeccCCCCCCCCCC----cccChhhhHhHHHHHHHcCCCCCCchhhhH
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAAENFDYP----VAMDIRELISLEDVMEELGLGPNGGLIYCM 78 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~-~~G~v~i~g~d~~~~~~~y~----~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~ 78 (247)
+++|+||||||||||+|.+++..-. ..|.. .+.....+++. +.+++.+++.. | .
T Consensus 32 ~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~----vp~~~~~i~~~~~i~~~~~~~~~ls~-------g----------~ 90 (216)
T cd03284 32 ILLITGPNMAGKSTYLRQVALIALLAQIGSF----VPASKAEIGVVDRIFTRIGASDDLAG-------G----------R 90 (216)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHhccCCe----eccccceecceeeEeccCCchhhhcc-------C----------c
Confidence 5789999999999999999864311 12211 01111223331 12222222210 0 0
Q ss_pred HhhhhhHHHHHHHHhhcCCCCCEEEEeCC---Cc-ccHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025844 79 EHLEDNLDDWLAEELDNYLDDDYLVFDCP---GQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (247)
Q Consensus 79 ~~l~~~~~~~la~al~~~~~p~~lilDEP---t~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v 136 (247)
..+...+ ..++.++....+|+++|+||| |+ +|.... ...+++.+.+. +.+++++
T Consensus 91 s~f~~e~-~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~---~~~il~~l~~~~~~~vi~~ 149 (216)
T cd03284 91 STFMVEM-VETANILNNATERSLVLLDEIGRGTSTYDGLSI---AWAIVEYLHEKIGAKTLFA 149 (216)
T ss_pred chHHHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH---HHHHHHHHHhccCCcEEEE
Confidence 1122222 345555543338999999999 87 887542 22566777655 6666554
No 414
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=3.6e-11 Score=110.00 Aligned_cols=133 Identities=17% Similarity=0.185 Sum_probs=80.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhC--CcCCCceEEEeccCCCCCCCCC--------------------------CcccChhhh
Q 025844 5 QLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAAENFDY--------------------------PVAMDIREL 56 (247)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~--l~~~~G~v~i~g~d~~~~~~~y--------------------------~~~~~v~e~ 56 (247)
++++||||-|||||++.|+.- --|..=.|.+..+.+.....+- .-+.++.+-
T Consensus 293 YGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaEr 372 (807)
T KOG0066|consen 293 YGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAER 372 (807)
T ss_pred ecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 589999999999999999853 2233334544443321111000 001122211
Q ss_pred Hh-----------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHH
Q 025844 57 IS-----------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHV 116 (247)
Q Consensus 57 i~-----------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~ 116 (247)
+. ++.++.-+|+.+......+ ..++++++ +.+||||.. +|.+|.|||||+ ||+.+..
T Consensus 373 l~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt-~kFSGGWRMRvSLARALfl--EPTLLMLDEPTNHLDLNAVI 449 (807)
T KOG0066|consen 373 LKEVADELRAIGADSAEARARRILAGLGFSKEMQERPT-TKFSGGWRMRVSLARALFL--EPTLLMLDEPTNHLDLNAVI 449 (807)
T ss_pred HHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCc-cccCCceeeehhHHHHHhc--CceeeeecCCccccccceee
Confidence 11 4556666666654433333 35666654 999999999 999999999999 9998765
Q ss_pred HHHHHHHHHHHhCCCeEEEEEeccccccc
Q 025844 117 PVLRNFVDHLKSRNFNVCAVYLLDSQFIT 145 (247)
Q Consensus 117 ~~~~~ll~~l~~~~~~ii~v~l~d~~~~~ 145 (247)
.+- +.++.++ .|+++|. +|-.++.
T Consensus 450 WLd-NYLQgWk---KTLLIVS-HDQgFLD 473 (807)
T KOG0066|consen 450 WLD-NYLQGWK---KTLLIVS-HDQGFLD 473 (807)
T ss_pred ehh-hHHhhhh---heeEEEe-cccchHH
Confidence 444 6666653 4666663 4554443
No 415
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.18 E-value=1.5e-10 Score=108.83 Aligned_cols=127 Identities=14% Similarity=0.138 Sum_probs=82.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC-CC-C---CCCCCCcccChhhhH-----------------hHHH
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PA-A---ENFDYPVAMDIRELI-----------------SLED 61 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d-~~-~---~~~~y~~~~~v~e~i-----------------~~~~ 61 (247)
-+.|.||||||||+|+|++.|+.+..+|++..-... +. . ..-||.+.=|.||.+ .+.+
T Consensus 463 ~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r 542 (659)
T KOG0060|consen 463 NLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILR 542 (659)
T ss_pred eEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHH
Confidence 367999999999999999999999899988764321 01 0 111222211333332 2556
Q ss_pred HHHHcCCCCCC---------chhhhHHhhh--hhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 025844 62 VMEELGLGPNG---------GLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (247)
Q Consensus 62 ~l~~~~L~~~~---------~~~~~~~~l~--~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (247)
.++.++|++.. .....++.++ +.+|.++||.+.. +|++-||||-|+ ++......+. +. .++.
T Consensus 543 ~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~--kPk~AiLDE~TSAv~~dvE~~~Y-r~---~r~~ 616 (659)
T KOG0060|consen 543 ILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYH--KPKFAILDECTSAVTEDVEGALY-RK---CREM 616 (659)
T ss_pred HHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhc--CCceEEeechhhhccHHHHHHHH-HH---HHHc
Confidence 66666665421 1111233444 3466899999999 999999999999 9988765555 43 4445
Q ss_pred CCeEEEE
Q 025844 130 NFNVCAV 136 (247)
Q Consensus 130 ~~~ii~v 136 (247)
|+|.+.|
T Consensus 617 giT~iSV 623 (659)
T KOG0060|consen 617 GITFISV 623 (659)
T ss_pred CCeEEEe
Confidence 8888766
No 416
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.14 E-value=2e-10 Score=98.16 Aligned_cols=115 Identities=15% Similarity=0.176 Sum_probs=66.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHh-CCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844 4 AQLVIGPAGSGKSTYCSSLYR-HCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g-~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~ 82 (247)
+++|+||||+||||+++.+++ .+.++.|...+.. . -.++|...+ +-..+ ...........+.
T Consensus 33 ~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~---~~~~~~~~i-----------~~~~~--~~d~~~~~~StF~ 95 (222)
T cd03287 33 CQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-S---ATLSIFDSV-----------LTRMG--ASDSIQHGMSTFM 95 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-c---eEEeccceE-----------EEEec--CccccccccchHH
Confidence 578999999999999999999 6777888755431 1 123332111 00001 0000000012333
Q ss_pred hhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025844 83 DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (247)
Q Consensus 83 ~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v 136 (247)
..+ ..++..+....+++++|+|||+. .++.....+...+++.+.+. +.+++++
T Consensus 96 ~e~-~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~ 150 (222)
T cd03287 96 VEL-SETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFV 150 (222)
T ss_pred HHH-HHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEE
Confidence 334 34444444333899999999976 77655555544778887765 6566544
No 417
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.13 E-value=1.2e-10 Score=115.36 Aligned_cols=116 Identities=12% Similarity=0.155 Sum_probs=69.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC-CcCCCc-eEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH-CETVRR-TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~-l~~~~G-~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~ 80 (247)
-.++|+||||+|||||+|+++|. +.+..| .|-... ...++|...+ .. .+++.......+..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~----~~~~~~~d~i-----------~~--~i~~~~si~~~LSt 385 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANE----HSEIPYFEEI-----------FA--DIGDEQSIEQNLST 385 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCc----cccccchhhe-----------ee--ecChHhHHhhhhhH
Confidence 36799999999999999999998 555555 221110 0123331110 00 11111111111234
Q ss_pred hhhhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 81 l~~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
++.++ ..++..+....+|+++|+|||++ +|+.....+...+++.+.+.|.+++++
T Consensus 386 fS~~m-~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viit 441 (771)
T TIGR01069 386 FSGHM-KNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLIT 441 (771)
T ss_pred HHHHH-HHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 55555 23333333223899999999999 999999888657888887777766554
No 418
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.04 E-value=1.9e-09 Score=91.42 Aligned_cols=68 Identities=18% Similarity=0.320 Sum_probs=43.6
Q ss_pred HHHHHHHcCCCCCCchhhhHHhhhhhHH--H--HHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeE
Q 025844 59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--D--WLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (247)
Q Consensus 59 ~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~--~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~i 133 (247)
+.+.+...++.+. .+++|.+ . ++.-|+....+.+++|||||.+ ||...+..+. .+++++.+ +.-+
T Consensus 123 ~~~~l~~~~i~~~--------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~-~~l~~~~~-~~Q~ 192 (220)
T PF02463_consen 123 LEELLPEVGISPE--------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLA-DLLKELSK-QSQF 192 (220)
T ss_dssp HHHHHHCTTTTTT--------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHH-HHHHHHTT-TSEE
T ss_pred ccccccccccccc--------ccccccccccccccccccccccccccccccccccccccccccccc-cccccccc-cccc
Confidence 5567777777665 4666654 2 2222333444778999999999 9999999988 88888754 3455
Q ss_pred EEE
Q 025844 134 CAV 136 (247)
Q Consensus 134 i~v 136 (247)
+++
T Consensus 193 ii~ 195 (220)
T PF02463_consen 193 IIT 195 (220)
T ss_dssp EEE
T ss_pred ccc
Confidence 554
No 419
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.01 E-value=1.1e-09 Score=100.06 Aligned_cols=126 Identities=16% Similarity=0.204 Sum_probs=79.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCc-eEEEeccCCCCCCCCCCcccChhhhHh------------HHHHHHHcCCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAENFDYPVAMDIRELIS------------LEDVMEELGLG 69 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G-~v~i~g~d~~~~~~~y~~~~~v~e~i~------------~~~~l~~~~L~ 69 (247)
.++..+|.||.|||||+++++|.++|+.| ++-..+.....+.+.-...-++|+.+. +.++|+-+.+.
T Consensus 368 eiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie 447 (592)
T KOG0063|consen 368 EIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQIE 447 (592)
T ss_pred eeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhHH
Confidence 35778999999999999999999999876 343333222222222112234555442 55666655554
Q ss_pred CCCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH-HhCCCeE
Q 025844 70 PNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL-KSRNFNV 133 (247)
Q Consensus 70 ~~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l-~~~~~~i 133 (247)
...++. ...+++| +|+++|..+-. .+++.+.|||.. ||...+.... ..+++. -..+++-
T Consensus 448 ~i~dqe--vq~lSggelQRval~KOGGK--pAdvYliDEpsAylDSeQRi~As-kvikRfilhakkta 510 (592)
T KOG0063|consen 448 NIIDQE--VQGLSGGELQRVALALCLGK--PADVYLIDEPSAYLDSEQRIIAS-KVIKRFILHAKKTA 510 (592)
T ss_pred HHHhHH--hhcCCchhhHHHHHHHhcCC--CCceEEecCchhhcChHHHHHHH-HHHHHHHHhccchh
Confidence 332222 2233433 45888888888 899999999999 9999887776 555553 2334443
No 420
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.00 E-value=9.6e-10 Score=102.57 Aligned_cols=123 Identities=19% Similarity=0.238 Sum_probs=72.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCC-C--ccc---ChhhhHh-----------------HH
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-P--VAM---DIRELIS-----------------LE 60 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y-~--~~~---~v~e~i~-----------------~~ 60 (247)
-+.|+||||||||+|+|++.|+.+...|...+- ..+++-| | |.+ |.||.+- ++
T Consensus 510 hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P----~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~ 585 (728)
T KOG0064|consen 510 HLLITGPNGCGKSSLFRILGGLWPVYNGLLSIP----RPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLE 585 (728)
T ss_pred eEEEECCCCccHHHHHHHHhccCcccCCeeecC----CCcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHH
Confidence 367999999999999999999998877766532 1111111 0 111 2222221 22
Q ss_pred HHHHHcCCCC-------CCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 025844 61 DVMEELGLGP-------NGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (247)
Q Consensus 61 ~~l~~~~L~~-------~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (247)
.++..+.|.. ........+.+++| ++..+||.+-+ +|+|-+|||-|+ +-+.....++ +..+..|
T Consensus 586 ~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yH--rPkyalLDEcTsAvsidvE~~i~----~~ak~~g 659 (728)
T KOG0064|consen 586 AILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYH--RPKYALLDECTSAVSIDVEGKIF----QAAKDAG 659 (728)
T ss_pred HHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhc--CcchhhhhhhhcccccchHHHHH----HHHHhcC
Confidence 3333332221 11111112344443 56889999988 999999999998 6665544433 4455568
Q ss_pred CeEEEE
Q 025844 131 FNVCAV 136 (247)
Q Consensus 131 ~~ii~v 136 (247)
.+.+.|
T Consensus 660 i~llsi 665 (728)
T KOG0064|consen 660 ISLLSI 665 (728)
T ss_pred ceEEEe
Confidence 887665
No 421
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.96 E-value=1.8e-09 Score=92.71 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=31.2
Q ss_pred CCCEEEEeCCCc-c----cHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025844 98 DDDYLVFDCPGQ-I----ELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (247)
Q Consensus 98 ~p~~lilDEPt~-L----D~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (247)
+|+++++|||++ + |+...+.+. ++++.+++.|.+++++|
T Consensus 117 ~~~~lVIDe~t~~l~~~~d~~~~~~l~-~~l~~l~~~g~tvi~t~ 160 (230)
T PRK08533 117 EKDVIIIDSLSSLISNDASEVAVNDLM-AFFKRISSLNKVIILTA 160 (230)
T ss_pred CCCEEEEECccHHhcCCcchHHHHHHH-HHHHHHHhCCCEEEEEe
Confidence 799999999998 7 777777777 88888877777766654
No 422
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.96 E-value=1.3e-09 Score=95.98 Aligned_cols=55 Identities=16% Similarity=-0.072 Sum_probs=39.6
Q ss_pred hhhhhHH--HHHHHHhhcC--CCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 80 HLEDNLD--DWLAEELDNY--LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 80 ~l~~~~~--~~la~al~~~--~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
.++++++ +.+|++++.. .+|+++++|||++ +|+.....+. +.+.++.+ +.+++++
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~-~~l~~~~~-~~tii~i 229 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVG-KKLKELSR-SHQVLCI 229 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHH-HHHHHHhC-CCEEEEE
Confidence 3555543 5666544321 2899999999999 9999999988 77887754 5666555
No 423
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.95 E-value=4.9e-09 Score=83.25 Aligned_cols=121 Identities=19% Similarity=0.193 Sum_probs=66.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhh---HHh
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYC---MEH 80 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~---~~~ 80 (247)
+++|.||||+||||+++.+++...+.++.+.+...+..... ..... ......+...+...... ...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~--------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 69 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEE--------LTERL---IGESLKGALDNLIIVFATADDPA 69 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHH--------HHHHH---hhhhhccccccEEEEEcCCCCCc
Confidence 36899999999999999999998888888887765432111 00000 00111110000000000 000
Q ss_pred hhhhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHh---------HHHHHHHHHHHHHhCCCeEEEEE
Q 025844 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFT---------HVPVLRNFVDHLKSRNFNVCAVY 137 (247)
Q Consensus 81 l~~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~---------~~~~~~~ll~~l~~~~~~ii~v~ 137 (247)
.....+.+.+.+... +|+++++|||+. ++... ....+..+.+..++.+.+++++.
T Consensus 70 ~~~~~~~~~~~~~~~--~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~ 134 (165)
T cd01120 70 AARLLSKAERLRERG--GDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTL 134 (165)
T ss_pred HHHHHHHHHHHHhCC--CCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEE
Confidence 000011334545555 899999999997 54432 12333366666655678877764
No 424
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.91 E-value=2.7e-08 Score=82.09 Aligned_cols=124 Identities=15% Similarity=0.244 Sum_probs=70.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcC--CCceEEEec-cCCC-C-----------CCCCCCcccChhhhHh----HHHHHH
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVN-LDPA-A-----------ENFDYPVAMDIRELIS----LEDVME 64 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~--~~G~v~i~g-~d~~-~-----------~~~~y~~~~~v~e~i~----~~~~l~ 64 (247)
++.|+|.||||||||+.+|+--... .+|.=-+.+ .|+. . ...+-...+....... ++|+..
T Consensus 39 IT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g~FlRAEs~yn~as~~De~~~ 118 (233)
T COG3910 39 ITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIGFFLRAESFYNVASYLDEADG 118 (233)
T ss_pred eEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcceEEehhHHHHHHHHHHhhhh
Confidence 6789999999999999999854332 222211111 1111 0 0100000111122222 445554
Q ss_pred HcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 65 ELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 65 ~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
+.+.+++. ++..+.|-+ ..+.+.+ . ..-+.|||||-+ |-|..+-.+. .+++.+.+.|.-+|++
T Consensus 119 e~~~~~~s-----Lh~~SHGEsf~~i~~~rf-~--~~GiYiLDEPEa~LSp~RQlell-a~l~~la~sGaQ~IiA 184 (233)
T COG3910 119 EANYGGRS-----LHHMSHGESFLAIFHNRF-N--GQGIYILDEPEAALSPSRQLELL-AILRDLADSGAQIIIA 184 (233)
T ss_pred hcccCCcc-----hhhhccchHHHHHHHHHh-c--cCceEEecCccccCCHHHHHHHH-HHHHHHHhcCCeEEEE
Confidence 44444332 334444432 2333333 2 678999999999 9999888888 8999998888666655
No 425
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.89 E-value=1.7e-08 Score=93.60 Aligned_cols=142 Identities=14% Similarity=0.161 Sum_probs=104.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC-CC--------CCCCC----------CcccChhhhHh-----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-AA--------ENFDY----------PVAMDIRELIS----- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~-~~--------~~~~y----------~~~~~v~e~i~----- 58 (247)
-+++|.|-.|-|-+.|+.+|+|+.++.+|+|.++|.|. .. ..++| -+++++.+|+-
T Consensus 285 EIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~ 364 (501)
T COG3845 285 EIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHD 364 (501)
T ss_pred cEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhcc
Confidence 47999999999999999999999998889999999885 11 12333 22456666542
Q ss_pred ------------------HHHHHHHcCCCCCCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHH
Q 025844 59 ------------------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (247)
Q Consensus 59 ------------------~~~~l~~~~L~~~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~ 117 (247)
..+++++++..+.+.... ...+++| +++.+||.+.. +|++||+-+||. ||..+...
T Consensus 365 ~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~-a~~LSGGNqQK~IlaREl~~--~p~lLI~~qPTrGLDvgA~~~ 441 (501)
T COG3845 365 KKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAP-ARSLSGGNQQKLILARELAR--RPDLLIAAQPTRGLDVGAIEF 441 (501)
T ss_pred ccccccccccCHHHHHHHHHHHHHHcCccCCCCCcc-hhhcCCcceehhhhhhhhcc--CCCEEEEcCCCccccHHHHHH
Confidence 678888998875433332 2345543 44889999999 999999999999 99999888
Q ss_pred HHHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 118 VLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 118 ~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+. +.+.+.++.|..|+++. ..+.+.-..++
T Consensus 442 I~-~~l~e~r~~G~AVLLiS----~dLDEil~lsD 471 (501)
T COG3845 442 IH-ERLLELRDAGKAVLLIS----EDLDEILELSD 471 (501)
T ss_pred HH-HHHHHHHhcCCEEEEEe----hhHHHHHHhhh
Confidence 87 66666677898887663 44444444444
No 426
>PRK13695 putative NTPase; Provisional
Probab=98.82 E-value=5.1e-09 Score=85.79 Aligned_cols=122 Identities=18% Similarity=0.278 Sum_probs=61.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC-----CCCCCCCCcccChhhhH-hHHHHHHHcCC-CCC--Cch
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-----AAENFDYPVAMDIRELI-SLEDVMEELGL-GPN--GGL 74 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~-----~~~~~~y~~~~~v~e~i-~~~~~l~~~~L-~~~--~~~ 74 (247)
-++|+|++|||||||++.+.+.+.+ .| +.+.|.-. ......+ .+.+.. ..+..+...+. +.. +..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G-~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~ 75 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EG-YKVGGFYTEEVREGGKRIGF----KIIDLDTGEEGILARVGFPSRPRVGKY 75 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CC-CeEEEEEcHHHHhcCCccce----EEEEcCCCCeEEccccCCCCCCceeeE
Confidence 4789999999999999999887765 34 23232211 0111111 111100 00111222222 111 111
Q ss_pred hhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 75 IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 75 ~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
....+.+ ......+++.... +|+++++|||+.++... ..+. +.+..+.+.+.+++++
T Consensus 76 ~~~lsgl-e~~~~~l~~~~l~--~~~~lllDE~~~~e~~~-~~~~-~~l~~~~~~~~~~i~v 132 (174)
T PRK13695 76 VVNLEDL-ERIGIPALERALE--EADVIIIDEIGKMELKS-PKFV-KAVEEVLDSEKPVIAT 132 (174)
T ss_pred EEehHHH-HHHHHHHHHhccC--CCCEEEEECCCcchhhh-HHHH-HHHHHHHhCCCeEEEE
Confidence 1111111 1111344444455 89999999987665554 3344 5666655667777666
No 427
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.81 E-value=1.7e-08 Score=100.57 Aligned_cols=112 Identities=15% Similarity=0.211 Sum_probs=67.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC-CcCCCceEEEeccCCCCC--CCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHh
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIVNLDPAAE--NFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~-l~~~~G~v~i~g~d~~~~--~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~ 80 (247)
+++|.|||++||||++|.+... +-+..|-. -|+.+ .+++.. .+ +. .++...........
T Consensus 329 ~~iITGpN~gGKTt~lktigl~~~maq~G~~-----vpa~~~~~i~~~~------~i-----~~--~ig~~~si~~~lSt 390 (782)
T PRK00409 329 VLVITGPNTGGKTVTLKTLGLAALMAKSGLP-----IPANEPSEIPVFK------EI-----FA--DIGDEQSIEQSLST 390 (782)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHHHhCCC-----cccCCCccccccc------eE-----EE--ecCCccchhhchhH
Confidence 5789999999999999999643 22222311 12221 233321 11 00 12222112222345
Q ss_pred hhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 81 LEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 81 l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
++.+++ ..+++++ . +|+++|+|||+. +|+.....+...+++.+.+.+.+++++
T Consensus 391 fS~~m~~~~~Il~~~-~--~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIit 446 (782)
T PRK00409 391 FSGHMTNIVRILEKA-D--KNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIAT 446 (782)
T ss_pred HHHHHHHHHHHHHhC-C--cCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 556553 3444444 4 899999999999 999988888757888887667666554
No 428
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.78 E-value=1.9e-07 Score=83.90 Aligned_cols=38 Identities=24% Similarity=0.374 Sum_probs=35.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~ 40 (247)
.+++++|||||||||++..|++++.+.+++|.+.+.|+
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 68899999999999999999999999889999998886
No 429
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.78 E-value=1.4e-08 Score=103.21 Aligned_cols=129 Identities=18% Similarity=0.233 Sum_probs=91.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcC---CCceEEEeccCCCC----CCCCC-------CcccChhhhHh-----------
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCET---VRRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS----------- 58 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~---~~G~v~i~g~d~~~----~~~~y-------~~~~~v~e~i~----------- 58 (247)
.+.++||+|||||||+++++|-+.. ..|+|.++|.+... ....| .+.+||++.+.
T Consensus 143 m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r 222 (1391)
T KOG0065|consen 143 MTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSR 222 (1391)
T ss_pred eEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccc
Confidence 4679999999999999999997653 24689999976532 12223 23556666553
Q ss_pred -------------HHHHHHHcCCCCCCchhhhH---HhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHH
Q 025844 59 -------------LEDVMEELGLGPNGGLIYCM---EHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (247)
Q Consensus 59 -------------~~~~l~~~~L~~~~~~~~~~---~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~ 119 (247)
.+.+++.+||..-.+-...- .-.++|.+ +.++..++. +++++..||+|. ||..+.-++.
T Consensus 223 ~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~--~~~~~~~De~t~GLDSsTal~ii 300 (1391)
T KOG0065|consen 223 YDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVG--PASILFWDEITRGLDSSTAFQII 300 (1391)
T ss_pred cccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeec--CcceeeeecccccccHHHHHHHH
Confidence 45788899997643322221 12333333 888888888 999999999999 9999999999
Q ss_pred HHHHHHHHhC-CCeEEE
Q 025844 120 RNFVDHLKSR-NFNVCA 135 (247)
Q Consensus 120 ~~ll~~l~~~-~~~ii~ 135 (247)
+.++++.+. +.+.++
T Consensus 301 -k~lr~~a~~~~~t~~v 316 (1391)
T KOG0065|consen 301 -KALRQLAHITGATALV 316 (1391)
T ss_pred -HHHHHHHhhhcceEEE
Confidence 888888764 445433
No 430
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.77 E-value=6e-08 Score=81.38 Aligned_cols=102 Identities=20% Similarity=0.208 Sum_probs=59.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCC-CceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~-~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~ 82 (247)
.++|.||+||||||+++.+.+.+.+. .|.|...+.++. ...... +. .......+.. .
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E---~~~~~~---~~------~i~q~~vg~~----------~ 60 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE---FVHESK---RS------LINQREVGLD----------T 60 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc---ccccCc---cc------eeeecccCCC----------c
Confidence 57899999999999999999888754 567666543321 111100 00 0111111111 0
Q ss_pred hhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 83 ~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
..+..++++++.. +|+++++|||. |..... ..++ ....|..++.+
T Consensus 61 ~~~~~~i~~aLr~--~pd~ii~gEir--d~e~~~----~~l~-~a~~G~~v~~t 105 (198)
T cd01131 61 LSFENALKAALRQ--DPDVILVGEMR--DLETIR----LALT-AAETGHLVMST 105 (198)
T ss_pred cCHHHHHHHHhcC--CcCEEEEcCCC--CHHHHH----HHHH-HHHcCCEEEEE
Confidence 1233667888888 99999999997 333222 3333 33567766444
No 431
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.74 E-value=1.2e-07 Score=92.61 Aligned_cols=60 Identities=20% Similarity=0.232 Sum_probs=47.5
Q ss_pred hhhhh--HHHHHHHHhhcC-CCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE-Eecc
Q 025844 80 HLEDN--LDDWLAEELDNY-LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV-YLLD 140 (247)
Q Consensus 80 ~l~~~--~~~~la~al~~~-~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v-~l~d 140 (247)
.+++| +|+-||..|... ....++||||||. |-..-.+.++ +.+++|...|.||+++ |-+|
T Consensus 822 TLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl-~VL~rLvd~GnTViVIEHNLd 886 (935)
T COG0178 822 TLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLL-EVLHRLVDKGNTVIVIEHNLD 886 (935)
T ss_pred cccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEecccc
Confidence 45544 568899999861 1238999999999 9999999999 9999998889999887 4444
No 432
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.74 E-value=5.4e-08 Score=82.98 Aligned_cols=114 Identities=15% Similarity=0.144 Sum_probs=63.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcC-CCceEEEeccCCCC-CCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAA-ENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~-~~G~v~i~g~d~~~-~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l 81 (247)
+++|.||||+||||+++.+++..-. ..|-. -|+. -.+++. +.+ +..++-..+ .......+
T Consensus 32 ~~~itG~n~~gKs~~l~~i~~~~~la~~G~~-----vpa~~~~i~~~------~~i-----~~~~~~~d~--~~~~~StF 93 (218)
T cd03286 32 ILVLTGPNMGGKSTLLRTVCLAVIMAQMGMD-----VPAKSMRLSLV------DRI-----FTRIGARDD--IMKGESTF 93 (218)
T ss_pred EEEEECCCCCchHHHHHHHHHHHHHHHcCCc-----cCccccEeccc------cEE-----EEecCcccc--cccCcchH
Confidence 5789999999999999999986321 11210 1111 111111 000 000111000 00001223
Q ss_pred hhhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025844 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (247)
Q Consensus 82 ~~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v 136 (247)
...+ ..+++.+....+|+++|+|||+. .++.....+...+++.+.+. +.+++++
T Consensus 94 ~~e~-~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~ 149 (218)
T cd03286 94 MVEL-SETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFS 149 (218)
T ss_pred HHHH-HHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 3333 33343443333899999999998 99998888886668888764 6666544
No 433
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.74 E-value=8.8e-08 Score=78.65 Aligned_cols=39 Identities=10% Similarity=0.050 Sum_probs=31.1
Q ss_pred CCCEEEEeCCCc-cc---HHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025844 98 DDDYLVFDCPGQ-IE---LFTHVPVLRNFVDHLKSRNFNVCAVY 137 (247)
Q Consensus 98 ~p~~lilDEPt~-LD---~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (247)
+|+++++|||+. +| ......+. ++++.+++.|.+++++.
T Consensus 95 ~~~~lviD~~~~~~~~~~~~~~~~i~-~l~~~l~~~g~tvi~v~ 137 (187)
T cd01124 95 KAKRVVIDSVSGLLLMEQSTARLEIR-RLLFALKRFGVTTLLTS 137 (187)
T ss_pred CCCEEEEeCcHHHhhcChHHHHHHHH-HHHHHHHHCCCEEEEEe
Confidence 899999999999 88 65555555 78888877788877663
No 434
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.72 E-value=1.4e-07 Score=99.84 Aligned_cols=73 Identities=16% Similarity=0.085 Sum_probs=53.8
Q ss_pred HHHHHcCCCCC-CchhhhHHhhhhh--HHHHHHHHhhcC-CCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEE
Q 025844 61 DVMEELGLGPN-GGLIYCMEHLEDN--LDDWLAEELDNY-LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (247)
Q Consensus 61 ~~l~~~~L~~~-~~~~~~~~~l~~~--~~~~la~al~~~-~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~ 135 (247)
+.|..+|||-. .++. ...+++| +|+.||..|..- ..+.+++|||||. |++...+.++ .++++|...|.||++
T Consensus 1681 ~~L~~vGLgYl~LGq~--~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll-~~l~~L~~~g~tviv 1757 (1809)
T PRK00635 1681 QALIDNGLGYLPLGQN--LSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALL-VQLRTLVSLGHSVIY 1757 (1809)
T ss_pred HHHHHcCCCeeeCCCc--CCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHH-HHHHHHHhcCCeEEE
Confidence 45556677642 1111 2345554 568899888751 1368999999999 9999999999 999999888999987
Q ss_pred E
Q 025844 136 V 136 (247)
Q Consensus 136 v 136 (247)
|
T Consensus 1758 i 1758 (1809)
T PRK00635 1758 I 1758 (1809)
T ss_pred E
Confidence 7
No 435
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.69 E-value=3.6e-08 Score=86.59 Aligned_cols=46 Identities=15% Similarity=0.105 Sum_probs=33.6
Q ss_pred HHhhhhhHH--HHHHHHhh---------cCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844 78 MEHLEDNLD--DWLAEELD---------NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (247)
Q Consensus 78 ~~~l~~~~~--~~la~al~---------~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (247)
.+.++.+++ ..+|++++ . +|+++++|||++ ||+..+..+. +.+.++
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~--~~~illlDEp~a~LD~~~~~~l~-~~l~~~ 238 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSG--EYPVLLLDDVLAELDLGRQAALL-DAIEGR 238 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhC--CCcEEEEcCcchhcCHHHHHHHH-HHhhcC
Confidence 344555554 66777664 5 899999999999 9999987776 555543
No 436
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.68 E-value=6.6e-08 Score=86.54 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=30.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~ 36 (247)
..++|+||+|||||||++++++++++..|.+.+.
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie 178 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE 178 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCCccccEEEEc
Confidence 4689999999999999999999999988877764
No 437
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.66 E-value=2.7e-07 Score=70.35 Aligned_cols=34 Identities=29% Similarity=0.450 Sum_probs=27.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~ 36 (247)
-.+.|+||+||||||+++.+++.+......+.+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~ 36 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence 4678999999999999999999988765234433
No 438
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.65 E-value=9.9e-09 Score=86.35 Aligned_cols=122 Identities=26% Similarity=0.342 Sum_probs=83.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCC-----CcccChhhhHhHHHHHHHcCCCCCCchhhh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-----PVAMDIRELISLEDVMEELGLGPNGGLIYC 77 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y-----~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~ 77 (247)
+-++++|+.|||||||++.+.+...+......+.+..++.....+ .+..|++....++.++..+..++++.....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~ 85 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY 85 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 678999999999999999999998887666666655555433333 345577777788889999999888765433
Q ss_pred HHhhhhh----HHHHHHHHhhcCCC-CCEEEEeCCCcccHHhHHHHHHHHHHHH
Q 025844 78 MEHLEDN----LDDWLAEELDNYLD-DDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (247)
Q Consensus 78 ~~~l~~~----~~~~la~al~~~~~-p~~lilDEPt~LD~~~~~~~~~~ll~~l 126 (247)
....... ...|... +... . +++.+++-|.+.|.+........+.+.+
T Consensus 86 d~~~~~~~~~~~~~~~~~-l~~~-~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~ 137 (219)
T COG1100 86 DSTLRESSDELTEEWLEE-LREL-APDDVPILLVGNKIDLFDEQSSSEEILNQL 137 (219)
T ss_pred ecccchhhhHHHHHHHHH-HHHh-CCCCceEEEEecccccccchhHHHHHHhhh
Confidence 2221111 1144433 3331 3 3799999999999988877663444444
No 439
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.62 E-value=2e-07 Score=87.07 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=34.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~ 40 (247)
-.++|+|+||+|||||+++|+|+.+++.|.+.+.|...
T Consensus 159 q~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg 196 (438)
T PRK07721 159 QRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERG 196 (438)
T ss_pred cEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCC
Confidence 35799999999999999999999999999999887654
No 440
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.61 E-value=3.3e-08 Score=87.66 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=34.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCc--CCCceEEEeccCC
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHIVNLDP 40 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~--~~~G~v~i~g~d~ 40 (247)
++++||.|||||||||++++|.+++. +.+|+|.+.+.|.
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~ 102 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDG 102 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccc
Confidence 58999999999999999999999997 7788998887764
No 441
>PRK14974 cell division protein FtsY; Provisional
Probab=98.58 E-value=2.2e-06 Score=77.56 Aligned_cols=102 Identities=17% Similarity=0.118 Sum_probs=58.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l 81 (247)
+++++++||||+||||++..++..+...+.+|.+.+-|+.+ ....-.+..+.+.+|+.-..... ..+ .
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R----------~~a~eqL~~~a~~lgv~v~~~~~-g~d-p 207 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR----------AGAIEQLEEHAERLGVKVIKHKY-GAD-P 207 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc----------HHHHHHHHHHHHHcCCceecccC-CCC-H
Confidence 36899999999999999999999888776788877655321 00111133445555543211000 000 0
Q ss_pred hhhHHHHHHHHhhcCCCCCEEEEeCCCcc--cHHhHHH
Q 025844 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQI--ELFTHVP 117 (247)
Q Consensus 82 ~~~~~~~la~al~~~~~p~~lilDEPt~L--D~~~~~~ 117 (247)
..-...++..+-.. +.+++|+|+|+.+ |.....+
T Consensus 208 ~~v~~~ai~~~~~~--~~DvVLIDTaGr~~~~~~lm~e 243 (336)
T PRK14974 208 AAVAYDAIEHAKAR--GIDVVLIDTAGRMHTDANLMDE 243 (336)
T ss_pred HHHHHHHHHHHHhC--CCCEEEEECCCccCCcHHHHHH
Confidence 00011222223334 6789999999974 4444433
No 442
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.58 E-value=5.4e-06 Score=65.59 Aligned_cols=20 Identities=25% Similarity=0.322 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHh
Q 025844 5 QLVIGPAGSGKSTYCSSLYR 24 (247)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g 24 (247)
++++|++|||||||++.+.+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN 21 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 68999999999999999994
No 443
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.58 E-value=6.6e-06 Score=64.84 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
..++++|+.|||||||++.+.|.
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999874
No 444
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.56 E-value=1.5e-07 Score=86.32 Aligned_cols=129 Identities=18% Similarity=0.099 Sum_probs=79.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC--------CCCCCC--------------Ccc---------cC
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------AENFDY--------------PVA---------MD 52 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~--------~~~~~y--------------~~~---------~~ 52 (247)
+.+++|.||-||||-+++++|-++|.-|..- .+.+.. .+-..| +|. .+
T Consensus 102 vlglvgtngigkstAlkilagk~kpnlg~~~-~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~k~~ 180 (592)
T KOG0063|consen 102 VLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAVKGT 180 (592)
T ss_pred hccccccCcccHHHHHHHHhCCCCCCCCCCC-CCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHHHHH
Confidence 5689999999999999999999999876531 111100 000011 110 01
Q ss_pred hhhhHh-------HHHHHHHcCCCCCCchhhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 025844 53 IRELIS-------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (247)
Q Consensus 53 v~e~i~-------~~~~l~~~~L~~~~~~~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~ 124 (247)
+...+. .+++++.+.|+....+-.......+.++.++|.+... ..++.+||||.+ ||...+.... ..++
T Consensus 181 v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq--~advyMFDEpSsYLDVKQRLkaA-~~IR 257 (592)
T KOG0063|consen 181 VGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQ--KADVYMFDEPSSYLDVKQRLKAA-ITIR 257 (592)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhh--hcceeEecCCcccchHHHhhhHH-HHHH
Confidence 222221 4556666666543333221112223345778888888 999999999999 9999888877 8888
Q ss_pred HHHhCCCeEEEE
Q 025844 125 HLKSRNFNVCAV 136 (247)
Q Consensus 125 ~l~~~~~~ii~v 136 (247)
.+...+.-+++|
T Consensus 258 sl~~p~~YiIVV 269 (592)
T KOG0063|consen 258 SLINPDRYIIVV 269 (592)
T ss_pred HhhCCCCeEEEE
Confidence 886544444444
No 445
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.53 E-value=3.8e-06 Score=70.50 Aligned_cols=30 Identities=23% Similarity=0.234 Sum_probs=24.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC-cCCCceE
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHC-ETVRRTM 33 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l-~~~~G~v 33 (247)
.++|+|++|+|||||+++|+|.. ....+++
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~ 32 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEEL 32 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeE
Confidence 57999999999999999999884 3334444
No 446
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.53 E-value=2.3e-07 Score=77.76 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=36.7
Q ss_pred hhhHH--HHHHHHhhcCCCC-CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 82 EDNLD--DWLAEELDNYLDD-DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 82 ~~~~~--~~la~al~~~~~p-~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
+.|.+ ..+...+...... .++++|||-+ |.|..++.++ ++++.+.+.+..++++
T Consensus 238 S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~-~~l~~~~~~~~Qviit 295 (303)
T PF13304_consen 238 SSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLI-ELLKELSKKNIQVIIT 295 (303)
T ss_dssp -HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHH-HHHHHTGGGSSEEEEE
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHH-HHHHhhCccCCEEEEe
Confidence 55544 2455555552233 8999999998 9999999998 8887775545566544
No 447
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.53 E-value=2.4e-06 Score=68.54 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 025844 5 QLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~ 25 (247)
++++|++|||||||++.+.|.
T Consensus 3 v~ivG~~~~GKStl~~~l~~~ 23 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNA 23 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999863
No 448
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.52 E-value=1.4e-06 Score=67.66 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=39.9
Q ss_pred CCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeeccccc
Q 025844 98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 177 (247)
Q Consensus 98 ~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dl 177 (247)
..++.+.|.|+.-+..............+.+. ... +++.+|........... ..........|.+-|+||+|+
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~-~d~-il~v~~~~~~~~~~~~~-----~~~~~~~~~~~~ivv~nK~D~ 116 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLER-ADL-ILFVVDADLRADEEEEK-----LLELLRERGKPVLLVLNKIDL 116 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHh-CCE-EEEEEeCCCCCCHHHHH-----HHHHHHhcCCeEEEEEEcccc
Confidence 46799999999744333222111233333222 112 22234444332222211 233344578899999999999
Q ss_pred ccch
Q 025844 178 VTNK 181 (247)
Q Consensus 178 l~~~ 181 (247)
....
T Consensus 117 ~~~~ 120 (163)
T cd00880 117 LPEE 120 (163)
T ss_pred CChh
Confidence 7654
No 449
>PRK00089 era GTPase Era; Reviewed
Probab=98.52 E-value=7.6e-06 Score=72.35 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
-.++|+|++|||||||++.+.|.
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~ 28 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQ 28 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999873
No 450
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.52 E-value=8.3e-07 Score=80.65 Aligned_cols=103 Identities=21% Similarity=0.164 Sum_probs=60.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC-CCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l 81 (247)
-.+.|.||+||||||+++.+.+.+.. .++.|.....++.. .++.... .+ .....+..
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~---~~~~~~~---~i------~q~evg~~---------- 180 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEY---VHRNKRS---LI------NQREVGLD---------- 180 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhh---hccCccc---eE------EccccCCC----------
Confidence 35789999999999999999997764 46777666432210 0100000 00 00011110
Q ss_pred hhhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 82 ~~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
...+..+++.++-. +|+++++||+. |..+....+ +. ...|..++.+
T Consensus 181 ~~~~~~~l~~~lr~--~pd~i~vgEir--d~~~~~~~l----~a-a~tGh~v~~T 226 (343)
T TIGR01420 181 TLSFANALRAALRE--DPDVILIGEMR--DLETVELAL----TA-AETGHLVFGT 226 (343)
T ss_pred CcCHHHHHHHhhcc--CCCEEEEeCCC--CHHHHHHHH----HH-HHcCCcEEEE
Confidence 01233567778878 99999999997 655543323 32 3567776554
No 451
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.51 E-value=6.5e-07 Score=72.10 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=17.7
Q ss_pred EEcCCCCcHHHHHHHHHhC
Q 025844 7 VIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 7 iiGpnGSGKSTLl~~l~g~ 25 (247)
|+|++|||||||++.++|.
T Consensus 1 iiG~~~~GKStll~~l~~~ 19 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNA 19 (176)
T ss_pred CCCCCCCcHHHHHHHHhcC
Confidence 5899999999999999985
No 452
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.51 E-value=8.6e-08 Score=82.10 Aligned_cols=37 Identities=27% Similarity=0.250 Sum_probs=32.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEE-ecc
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI-VNL 38 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i-~g~ 38 (247)
+++++|.||||||||||++.|++.+++.+|.+.+ ...
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~ 70 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPM 70 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEec
Confidence 4789999999999999999999999999998655 443
No 453
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.49 E-value=2.2e-06 Score=69.90 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=32.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~ 40 (247)
|++++.||+||||||++..++..+...+.++.+.+.|+
T Consensus 1 ~~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 1 TVILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 57899999999999999999988776666788887775
No 454
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.49 E-value=1.3e-06 Score=74.94 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=27.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCcCCCceEEEecc
Q 025844 3 YAQLVIGPAGSGKSTYCSSLY-RHCETVRRTMHIVNL 38 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~-g~l~~~~G~v~i~g~ 38 (247)
.++.|.|++|||||||+..++ +.++ .++.+.+...
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~ 61 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVITT 61 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEEc
Confidence 578899999999999999884 4333 4667777765
No 455
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.48 E-value=1.5e-07 Score=78.08 Aligned_cols=35 Identities=29% Similarity=0.378 Sum_probs=31.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEec
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g 37 (247)
..++|+|||||||||++++++|+++++.|.+.+.+
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied 60 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDERIITIED 60 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECC
Confidence 46899999999999999999999999999888754
No 456
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.48 E-value=6.8e-07 Score=77.70 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=24.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCc
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRR 31 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G 31 (247)
.++|+||+|+|||||++.+++.+....+
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~~~~f 45 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITKNHP 45 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhccccccC
Confidence 5789999999999999999998877543
No 457
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.48 E-value=9.8e-07 Score=74.03 Aligned_cols=110 Identities=16% Similarity=0.174 Sum_probs=61.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l 81 (247)
+.+++++||+|+||||.+--|+..+...+.+|.+...|..+ +.-.-.++.+.+.+|+.-...... +..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R----------~ga~eQL~~~a~~l~vp~~~~~~~--~~~ 68 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR----------IGAVEQLKTYAEILGVPFYVARTE--SDP 68 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS----------THHHHHHHHHHHHHTEEEEESSTT--SCH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC----------ccHHHHHHHHHHHhccccchhhcc--hhh
Confidence 46899999999999999988888877666678777665422 111112444555666542110000 000
Q ss_pred hhhHHHHHHHHhhcCCCCCEEEEeCCCc--ccHHhHHHHHHHHHHHH
Q 025844 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHL 126 (247)
Q Consensus 82 ~~~~~~~la~al~~~~~p~~lilDEPt~--LD~~~~~~~~~~ll~~l 126 (247)
.+-.+.++...-.. +-+++++|.|+- -|.....++. ++++..
T Consensus 69 ~~~~~~~l~~~~~~--~~D~vlIDT~Gr~~~d~~~~~el~-~~~~~~ 112 (196)
T PF00448_consen 69 AEIAREALEKFRKK--GYDLVLIDTAGRSPRDEELLEELK-KLLEAL 112 (196)
T ss_dssp HHHHHHHHHHHHHT--TSSEEEEEE-SSSSTHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHhhc--CCCEEEEecCCcchhhHHHHHHHH-HHhhhc
Confidence 00011222222223 578999999994 6666555554 666655
No 458
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.45 E-value=1.9e-05 Score=64.97 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYR 24 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (247)
.-++|+|++|+|||||++.+++
T Consensus 25 ~~v~ivG~~~~GKSsli~~l~~ 46 (196)
T PRK00454 25 PEIAFAGRSNVGKSSLINALTN 46 (196)
T ss_pred CEEEEEcCCCCCHHHHHHHHhC
Confidence 3589999999999999999997
No 459
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.45 E-value=3.7e-06 Score=72.66 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=25.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC--CcCCCceEE
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRH--CETVRRTMH 34 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~--l~~~~G~v~ 34 (247)
.++|+|++||||||++++++|. .+...|.+.
T Consensus 28 ~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t 60 (240)
T smart00053 28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 60 (240)
T ss_pred eEEEEcCCCccHHHHHHHHhCCCccccCCCccc
Confidence 4789999999999999999998 555566554
No 460
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.45 E-value=3.8e-06 Score=82.91 Aligned_cols=91 Identities=20% Similarity=0.218 Sum_probs=54.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCc--eEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G--~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~ 80 (247)
-+++++||||+||||++..|++.+....| +|.+...|... ++ ..+ .+..+.+.+++......
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R--ig------A~e--QL~~~a~~~gvpv~~~~------ 249 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR--IG------ALE--QLRIYGRILGVPVHAVK------ 249 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc--hH------HHH--HHHHHHHhCCCCccccC------
Confidence 47899999999999999999999865554 67777666421 11 112 13345555555332110
Q ss_pred hhhhHHHHHHHHhhcCCCCCEEEEeCCCc--ccHH
Q 025844 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELF 113 (247)
Q Consensus 81 l~~~~~~~la~al~~~~~p~~lilDEPt~--LD~~ 113 (247)
-...+ ..++....+-+++|+|.|+- -|..
T Consensus 250 ~~~~l----~~al~~~~~~D~VLIDTAGRs~~d~~ 280 (767)
T PRK14723 250 DAADL----RFALAALGDKHLVLIDTVGMSQRDRN 280 (767)
T ss_pred CHHHH----HHHHHHhcCCCEEEEeCCCCCccCHH
Confidence 01112 22222222669999999994 5543
No 461
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.44 E-value=7.1e-06 Score=71.95 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
.++|+|++|+|||||++.+.|-
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~ 23 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQ 23 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999974
No 462
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.41 E-value=2.7e-07 Score=69.86 Aligned_cols=32 Identities=28% Similarity=0.444 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~ 40 (247)
-+++|+||+|||||||++++. +|++.++|.|.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di 47 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI------KRKHRLVGDDN 47 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeH
Confidence 468999999999999999986 78999999775
No 463
>PRK09866 hypothetical protein; Provisional
Probab=98.39 E-value=3e-05 Score=74.98 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
++++|+|++|||||||++++.|..
T Consensus 70 ~~valvG~sgaGKSTLiNaL~G~~ 93 (741)
T PRK09866 70 MVLAIVGTMKAGKSTTINAIVGTE 93 (741)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCc
Confidence 678999999999999999999964
No 464
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.38 E-value=1.7e-06 Score=66.61 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~ 36 (247)
.+.|.||+|+||||+++.++..+...+..+.+.
T Consensus 21 ~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~ 53 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANELFRPGAPFLYL 53 (151)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEE
Confidence 578999999999999999999876444445444
No 465
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.38 E-value=2.1e-07 Score=79.38 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=30.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcC--CCceEEEeccC
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLD 39 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~--~~G~v~i~g~d 39 (247)
++||.||||||||||++.|++.+.+ .++++.+..+|
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D 38 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTD 38 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecC
Confidence 5799999999999999999999975 56777775443
No 466
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.37 E-value=6.1e-06 Score=72.66 Aligned_cols=109 Identities=15% Similarity=0.129 Sum_probs=63.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~ 82 (247)
.+++++||+|+||||++..++..+...+.+|.+...|+.+ ....-.+..+.+..++.-..... ..+ ..
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r----------~~a~~ql~~~~~~~~i~~~~~~~-~~d-p~ 140 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR----------AAAIEQLEEWAKRLGVDVIKQKE-GAD-PA 140 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC----------HHHHHHHHHHHHhCCeEEEeCCC-CCC-HH
Confidence 5788999999999999999999888777789998877621 11112344455555543110000 000 00
Q ss_pred hhHHHHHHHHhhcCCCCCEEEEeCCCc--ccHHhHHHHHHHHHHHH
Q 025844 83 DNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHL 126 (247)
Q Consensus 83 ~~~~~~la~al~~~~~p~~lilDEPt~--LD~~~~~~~~~~ll~~l 126 (247)
......+..+... +-+++|+|.|+. -|.....++. .+.+..
T Consensus 141 ~~~~~~l~~~~~~--~~D~ViIDT~G~~~~d~~~~~el~-~~~~~~ 183 (272)
T TIGR00064 141 AVAFDAIQKAKAR--NIDVVLIDTAGRLQNKVNLMDELK-KIKRVI 183 (272)
T ss_pred HHHHHHHHHHHHC--CCCEEEEeCCCCCcchHHHHHHHH-HHHHHH
Confidence 1000223333445 789999999996 4544443333 444433
No 467
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.37 E-value=2.3e-06 Score=67.95 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++++|++|||||||++.+.+.
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999999843
No 468
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.36 E-value=2.8e-06 Score=68.76 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCc
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
++.|+|++|||||||++.+.+..+
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~~ 25 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQH 25 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhccc
Confidence 467999999999999999887643
No 469
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.36 E-value=3.6e-07 Score=85.47 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=32.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCc-eEEEeccCCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPA 41 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G-~v~i~g~d~~ 41 (247)
-+++|+||+|||||||++ .|+.+|++| +|.++|.+..
T Consensus 33 Eiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 33 SLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSF 70 (504)
T ss_pred CEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECC
Confidence 478999999999999999 788888888 7999997763
No 470
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.35 E-value=4.1e-06 Score=77.01 Aligned_cols=38 Identities=24% Similarity=0.401 Sum_probs=31.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~ 40 (247)
.+++++|||||||||++..|++.+...+.+|.+...|+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt 279 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDH 279 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCC
Confidence 47899999999999999999998765555777776664
No 471
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.34 E-value=1.1e-06 Score=72.64 Aligned_cols=111 Identities=18% Similarity=0.423 Sum_probs=59.3
Q ss_pred CCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeeccccc
Q 025844 98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 177 (247)
Q Consensus 98 ~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dl 177 (247)
...+-++|.||..|. .......+...+..+++ +|+..-..+.. .-........+.|.+-|+||+|+
T Consensus 69 ~~~i~~iDtPG~~~f------~~~~~~~~~~~D~ailv---Vda~~g~~~~~-----~~~l~~~~~~~~p~ivvlNK~D~ 134 (188)
T PF00009_consen 69 NRKITLIDTPGHEDF------IKEMIRGLRQADIAILV---VDANDGIQPQT-----EEHLKILRELGIPIIVVLNKMDL 134 (188)
T ss_dssp SEEEEEEEESSSHHH------HHHHHHHHTTSSEEEEE---EETTTBSTHHH-----HHHHHHHHHTT-SEEEEEETCTS
T ss_pred ccceeecccccccce------eecccceecccccceee---eeccccccccc-----ccccccccccccceEEeeeeccc
Confidence 567999999997542 22444455444544433 44432222211 12233345678899999999999
Q ss_pred ccchhhhhhhcccCHHHHHHHhhcccchhHHHHHHHHHHHhhhc--CCeeeEEeeccChH---HHHHHhhh
Q 025844 178 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--SMVSFMPLDLRKES---RLLSQIMK 243 (247)
Q Consensus 178 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~---~l~~~id~ 243 (247)
+..+ +++. ..++...+.+-...- ..+.+.|.|..+.+ .|+..+++
T Consensus 135 ~~~~--~~~~-------------------~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~ 184 (188)
T PF00009_consen 135 IEKE--LEEI-------------------IEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVE 184 (188)
T ss_dssp SHHH--HHHH-------------------HHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHH
T ss_pred hhhh--HHHH-------------------HHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHH
Confidence 8222 2211 112222222222211 35789999998777 56665543
No 472
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.33 E-value=5.5e-06 Score=71.30 Aligned_cols=38 Identities=16% Similarity=0.099 Sum_probs=29.0
Q ss_pred CCCEEEEeCCCc-------ccHHhHHHHHHHHHHHHHh-CCCeEEEEE
Q 025844 98 DDDYLVFDCPGQ-------IELFTHVPVLRNFVDHLKS-RNFNVCAVY 137 (247)
Q Consensus 98 ~p~~lilDEPt~-------LD~~~~~~~~~~ll~~l~~-~~~~ii~v~ 137 (247)
+|+++++| |.+ .|......++ +.+.++.+ .|.+++++|
T Consensus 111 ~~~lvviD-pl~~~~~~~~~d~~~~~~~~-~~L~~~a~~~g~avl~v~ 156 (239)
T cd01125 111 RIDLVVID-PLVSFHGVSENDNGAMDAVI-KALRRIAAQTGAAILLVH 156 (239)
T ss_pred CCCEEEEC-ChHHhCCCCcCCHHHHHHHH-HHHHHHHHHhCCEEEEEe
Confidence 89999999 753 5787777777 66666654 588888886
No 473
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.31 E-value=1.6e-05 Score=69.07 Aligned_cols=96 Identities=24% Similarity=0.328 Sum_probs=55.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhhh
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~~ 83 (247)
.++|.||+||||||+++.+.+.+++. .+.+.... .+..+..+. ...+...+|+.+.+... .....
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~--~~~~~~~~--------~~~~~~~~~--l~~i~~~lG~~~~~~~~---~~~~~ 109 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQE--RVVAAKLV--------NTRVDAEDL--LRMVAADFGLETEGRDK---AALLR 109 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCC--CeEEeeee--------CCCCCHHHH--HHHHHHHcCCCCCCCCH---HHHHH
Confidence 57899999999999999999988753 33322211 111233333 34566777776543221 11222
Q ss_pred hHHHHHHHHh-hcCCCCCEEEEeCCCcccHHhHH
Q 025844 84 NLDDWLAEEL-DNYLDDDYLVFDCPGQIELFTHV 116 (247)
Q Consensus 84 ~~~~~la~al-~~~~~p~~lilDEPt~LD~~~~~ 116 (247)
.+...+.... .. ++.++++||.-.++.....
T Consensus 110 ~l~~~l~~~~~~~--~~~vliiDe~~~l~~~~~~ 141 (269)
T TIGR03015 110 ELEDFLIEQFAAG--KRALLVVDEAQNLTPELLE 141 (269)
T ss_pred HHHHHHHHHHhCC--CCeEEEEECcccCCHHHHH
Confidence 2323332222 33 6779999996668876543
No 474
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.30 E-value=2.8e-05 Score=60.27 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
+-++++|+.|||||||++.+.+-.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999998753
No 475
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.30 E-value=8.5e-06 Score=74.69 Aligned_cols=91 Identities=19% Similarity=0.211 Sum_probs=51.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCc--eEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G--~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~ 80 (247)
.+++++||||+||||++..|++.+....| +|.+...|... ....|. +..+.+.+|+.-... .
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R--------~ga~Eq--L~~~a~~~gv~~~~~------~ 201 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR--------IGGHEQ--LRIFGKILGVPVHAV------K 201 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc--------ccHHHH--HHHHHHHcCCceEec------C
Confidence 47889999999999999999987543323 56666544321 011222 233444455432110 0
Q ss_pred hhhhHHHHHHHHhhcCCCCCEEEEeCCCc--ccHH
Q 025844 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELF 113 (247)
Q Consensus 81 l~~~~~~~la~al~~~~~p~~lilDEPt~--LD~~ 113 (247)
-...+ ..++..+.+.+++|+|+|+- .|..
T Consensus 202 ~~~~l----~~~l~~l~~~DlVLIDTaG~~~~d~~ 232 (374)
T PRK14722 202 DGGDL----QLALAELRNKHMVLIDTIGMSQRDRT 232 (374)
T ss_pred CcccH----HHHHHHhcCCCEEEEcCCCCCcccHH
Confidence 01112 22333222789999999984 6665
No 476
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.30 E-value=5.7e-06 Score=77.22 Aligned_cols=101 Identities=19% Similarity=0.256 Sum_probs=58.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc-C-CCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE-T-VRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~-~-~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~ 80 (247)
.+++++||+|+||||++..|+..+. . .+.+|.+...|+.. .+ ..+ .+..+.+.+++......
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r--~~------a~e--qL~~~a~~~~vp~~~~~------ 285 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR--IG------AVE--QLKTYAKIMGIPVEVVY------ 285 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH--HH------HHH--HHHHHHHHhCCceEccC------
Confidence 3789999999999999999998775 2 34478888766521 00 001 12333444454321100
Q ss_pred hhhhHHHHHHHHhhcCCCCCEEEEeCCCc--ccHHhHHHHHHHHHH
Q 025844 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVD 124 (247)
Q Consensus 81 l~~~~~~~la~al~~~~~p~~lilDEPt~--LD~~~~~~~~~~ll~ 124 (247)
-. ..++.++....+.+++|+|.|+. .|......+. .+++
T Consensus 286 ~~----~~l~~~l~~~~~~DlVlIDt~G~~~~d~~~~~~L~-~ll~ 326 (424)
T PRK05703 286 DP----KELAKALEQLRDCDVILIDTAGRSQRDKRLIEELK-ALIE 326 (424)
T ss_pred CH----HhHHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHH-HHHh
Confidence 01 11222332222789999999985 7776655554 5555
No 477
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.29 E-value=8.4e-06 Score=65.25 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCc
Q 025844 5 QLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
++++|++|||||||++.+.+...
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~~ 24 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFS 24 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhcc
Confidence 68999999999999999988543
No 478
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.29 E-value=5.8e-07 Score=74.99 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=29.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d 39 (247)
+++|.||+|||||||++.|++++ .+|.+.+.+.|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D 34 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQD 34 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEec
Confidence 47999999999999999999998 45677777765
No 479
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.28 E-value=1.3e-06 Score=66.34 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 025844 5 QLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~ 25 (247)
++|+|+.|||||||++.|+|.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 689999999999999999973
No 480
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.27 E-value=5.4e-06 Score=77.23 Aligned_cols=98 Identities=14% Similarity=0.176 Sum_probs=58.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHh-hh
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH-LE 82 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~-l~ 82 (247)
.++|+|++|+|||||++++++..+++.|.+...|... .++++++ ++.+..-++...--.....+. ..
T Consensus 158 ri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg----------~ev~e~~--~~~l~~~gl~~tvvv~~tsd~s~~ 225 (432)
T PRK06793 158 KIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG----------REVKDFI--RKELGEEGMRKSVVVVATSDESHL 225 (432)
T ss_pred EEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc----------ccHHHHH--HHHhhhcccceeEEEEECCCCCHH
Confidence 5789999999999999999999999988887776543 1344432 223333333211000000010 00
Q ss_pred hhHH-----HHHHHHhhcCCCCCEEEEeCCCc-ccHH
Q 025844 83 DNLD-----DWLAEELDNYLDDDYLVFDCPGQ-IELF 113 (247)
Q Consensus 83 ~~~~-----~~la~al~~~~~p~~lilDEPt~-LD~~ 113 (247)
...+ ..+|.-+....++-++++|+||. .|+.
T Consensus 226 ~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~ 262 (432)
T PRK06793 226 MQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR 262 (432)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH
Confidence 1111 33444444334788999999999 8886
No 481
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.27 E-value=6.8e-07 Score=75.28 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=28.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d 39 (247)
.+++|+||||||||||++.|++++++ +.+.+...|
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D 41 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQD 41 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEeccc
Confidence 68999999999999999999999876 445444443
No 482
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.27 E-value=2.8e-05 Score=61.88 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
.-++++|+.|+|||||++.+.+-
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~ 25 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGE 25 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCc
Confidence 46899999999999999999864
No 483
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.26 E-value=6.5e-06 Score=65.97 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
-++++|++|||||||++.+.+.-
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~ 24 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGK 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 36899999999999999998753
No 484
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.25 E-value=2.9e-05 Score=65.06 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
..++++|..|+|||||+..|.+..
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~ 26 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVL 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999998754
No 485
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.25 E-value=2.2e-05 Score=63.75 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=21.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCcCC
Q 025844 5 QLVIGPAGSGKSTYCSSLYRHCETV 29 (247)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l~~~ 29 (247)
++|+|+.|||||||++.+.+...+.
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~~~ 26 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDI 26 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCCC
Confidence 6899999999999999999875543
No 486
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.22 E-value=3e-06 Score=68.41 Aligned_cols=122 Identities=20% Similarity=0.298 Sum_probs=66.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC-----CCCCCCCCCcccChhhhHh-HHHHHHHcCC-----C
Q 025844 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-----PAAENFDYPVAMDIRELIS-LEDVMEELGL-----G 69 (247)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d-----~~~~~~~y~~~~~v~e~i~-~~~~l~~~~L-----~ 69 (247)
|.+-++|.||+|+||||+++-++..++..+ ..+.|.- -....++| ++.+.-+ =+.++...+. |
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgGf~t~EVR~gGkR~GF----~Ivdl~tg~~~~la~~~~~~~rvG 77 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVGGFITPEVREGGKRIGF----KIVDLATGEEGILARVGFSRPRVG 77 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceeeeEEeeeeecCCeEeee----EEEEccCCceEEEEEcCCCCcccc
Confidence 356689999999999999999998887652 2223310 01122233 1111110 0012222222 2
Q ss_pred CCCchhhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 70 PNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 70 ~~~~~~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
.++-. .+.+..-..-+|.+|+. .+|++|.||-+-++..+. .+. +.+++..+.+..++++
T Consensus 78 kY~V~---v~~le~i~~~al~rA~~---~aDvIIIDEIGpMElks~-~f~-~~ve~vl~~~kpliat 136 (179)
T COG1618 78 KYGVN---VEGLEEIAIPALRRALE---EADVIIIDEIGPMELKSK-KFR-EAVEEVLKSGKPLIAT 136 (179)
T ss_pred eEEee---HHHHHHHhHHHHHHHhh---cCCEEEEecccchhhccH-HHH-HHHHHHhcCCCcEEEE
Confidence 11111 11111112245555553 579999999999999864 555 6777765666666555
No 487
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.21 E-value=1.7e-05 Score=74.93 Aligned_cols=87 Identities=22% Similarity=0.284 Sum_probs=52.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCc--eEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G--~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~ 80 (247)
.+++++||||+||||++..|++.+....| +|.+...|+. .+...+++ ..+.+.+|+.....
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~--------RigA~EQL--r~~AeilGVpv~~~------- 319 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSY--------RIGGHEQL--RIYGKILGVPVHAV------- 319 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCcc--------chhHHHHH--HHHHHHhCCCeecc-------
Confidence 57899999999999999999999876655 5666655541 12344433 33445555432210
Q ss_pred hhhhHHHHHHHHhhcCCCCCEEEEeCCCc
Q 025844 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQ 109 (247)
Q Consensus 81 l~~~~~~~la~al~~~~~p~~lilDEPt~ 109 (247)
......+.+ +..+.+.+++++|+++-
T Consensus 320 -~~~~Dl~~a--L~~L~d~d~VLIDTaGr 345 (484)
T PRK06995 320 -KDAADLRLA--LSELRNKHIVLIDTIGM 345 (484)
T ss_pred -CCchhHHHH--HHhccCCCeEEeCCCCc
Confidence 011112222 22222668899999883
No 488
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.21 E-value=1.5e-05 Score=64.41 Aligned_cols=118 Identities=20% Similarity=0.213 Sum_probs=69.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhhh
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~~ 83 (247)
-++++|.+-+|||||++.|+|.. ..+.|. |..|+.-. .+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~------~~v~n~----------pG~Tv~~~-------------------------~g 40 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK------QKVGNW----------PGTTVEKK-------------------------EG 40 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS------EEEEES----------TTSSSEEE-------------------------EE
T ss_pred EEEEECCCCCCHHHHHHHHHCCC------ceecCC----------CCCCeeee-------------------------eE
Confidence 37899999999999999999964 333332 11121100 00
Q ss_pred hHHHHHHHHhhcCCCCCEEEEeCCCc--ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhhhhHHHhHHH
Q 025844 84 NLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (247)
Q Consensus 84 ~~~~~la~al~~~~~p~~lilDEPt~--LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~ 161 (247)
.+ -.. +.++.+.|-||. +.+.+..+.+ ..+.+..... =++++++|+..+. +-+......
T Consensus 41 ~~-------~~~--~~~~~lvDlPG~ysl~~~s~ee~v--~~~~l~~~~~-D~ii~VvDa~~l~-------r~l~l~~ql 101 (156)
T PF02421_consen 41 IF-------KLG--DQQVELVDLPGIYSLSSKSEEERV--ARDYLLSEKP-DLIIVVVDATNLE-------RNLYLTLQL 101 (156)
T ss_dssp EE-------EET--TEEEEEEE----SSSSSSSHHHHH--HHHHHHHTSS-SEEEEEEEGGGHH-------HHHHHHHHH
T ss_pred EE-------Eec--CceEEEEECCCcccCCCCCcHHHH--HHHHHhhcCC-CEEEEECCCCCHH-------HHHHHHHHH
Confidence 00 001 567999999984 7766544422 1222333333 3355567877643 233445566
Q ss_pred hhccCCeeeeecccccccch
Q 025844 162 VQLELPHVNILSKMDLVTNK 181 (247)
Q Consensus 162 ~~~~~p~i~vlsk~dll~~~ 181 (247)
..++.|.+.|+||+|.+.+.
T Consensus 102 ~e~g~P~vvvlN~~D~a~~~ 121 (156)
T PF02421_consen 102 LELGIPVVVVLNKMDEAERK 121 (156)
T ss_dssp HHTTSSEEEEEETHHHHHHT
T ss_pred HHcCCCEEEEEeCHHHHHHc
Confidence 67899999999999998765
No 489
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.21 E-value=3.9e-06 Score=85.05 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=56.5
Q ss_pred HHHHHcCCCCC-CchhhhHHhhhhhH--HHHHHHHhhcCCCC--CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEE
Q 025844 61 DVMEELGLGPN-GGLIYCMEHLEDNL--DDWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC 134 (247)
Q Consensus 61 ~~l~~~~L~~~-~~~~~~~~~l~~~~--~~~la~al~~~~~p--~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii 134 (247)
+.++.+||+.. ..+. ...++++. ++.||++|+. +| +++||||||+ ||+.....++ ++++++++.|.+|+
T Consensus 471 ~~L~~vGL~~l~l~r~--~~~LSgGE~QRv~LA~aL~~--~~~~~llILDEPtagLd~~~~~~L~-~~L~~L~~~G~TVI 545 (943)
T PRK00349 471 KFLVDVGLDYLTLSRS--AGTLSGGEAQRIRLATQIGS--GLTGVLYVLDEPSIGLHQRDNDRLI-ETLKHLRDLGNTLI 545 (943)
T ss_pred HHhhccccCCCCCCCc--hhhCCHHHHHHHHHHHHHhh--CCCCcEEEecCCccCCCHHHHHHHH-HHHHHHHhCCCEEE
Confidence 36777888743 2333 34566654 4899999998 76 9999999999 9999999999 99999987788987
Q ss_pred EE
Q 025844 135 AV 136 (247)
Q Consensus 135 ~v 136 (247)
+|
T Consensus 546 vV 547 (943)
T PRK00349 546 VV 547 (943)
T ss_pred EE
Confidence 77
No 490
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.19 E-value=6.5e-06 Score=72.86 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=31.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCC-C-ceEEEeccCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-R-RTMHIVNLDP 40 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~-~-G~v~i~g~d~ 40 (247)
.+++++||+|+||||++..|+..+... + .+|.+...|+
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 478999999999999999999988665 3 4788887665
No 491
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.19 E-value=1.3e-06 Score=72.34 Aligned_cols=34 Identities=29% Similarity=0.557 Sum_probs=27.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEec
Q 025844 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (247)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g 37 (247)
|.-+++|+|||||||||+++.|++...+ .+.+.+
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~ 34 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAH 34 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcC
Confidence 5567899999999999999999998765 355444
No 492
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.19 E-value=1.2e-05 Score=61.57 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=18.9
Q ss_pred EEcCCCCcHHHHHHHHHhCCc
Q 025844 7 VIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 7 iiGpnGSGKSTLl~~l~g~l~ 27 (247)
|+|+.|||||||++.+.+...
T Consensus 1 iiG~~~~GKStl~~~l~~~~~ 21 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEF 21 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCc
Confidence 589999999999999998755
No 493
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.18 E-value=1.9e-05 Score=66.00 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=29.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~ 36 (247)
+-++|+|++|+|||||+++|.|...+..|.+...
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~ 35 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTG 35 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccC
Confidence 4589999999999999999999888777776654
No 494
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.17 E-value=2.9e-05 Score=78.03 Aligned_cols=34 Identities=26% Similarity=0.494 Sum_probs=29.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEec
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g 37 (247)
.++|+||+|||||||++.+.+.....++++.+.+
T Consensus 448 ~~~i~G~tGsGKS~l~~~l~~~~~~~~~~i~~~D 481 (800)
T PRK13898 448 HTLIIGPTGAGKTVLMNFLCAQAMKFSPRMFFFD 481 (800)
T ss_pred EEEEECCCCCcHHHHHHHHHhhcccCCCeEEEeC
Confidence 3789999999999999999998777777777754
No 495
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.17 E-value=2.1e-06 Score=72.32 Aligned_cols=37 Identities=24% Similarity=0.415 Sum_probs=30.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~ 40 (247)
+.+++|.|++|||||||++.|++.+. .+.+.+.+.|.
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l~--~~~~~~i~~D~ 42 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEELG--DESIAVIPQDS 42 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC--CCceEEEeCCc
Confidence 47899999999999999999999883 45676666654
No 496
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.16 E-value=2.7e-06 Score=85.77 Aligned_cols=111 Identities=14% Similarity=0.182 Sum_probs=60.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC-cCCCceEEEeccCCCC-CCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHC-ETVRRTMHIVNLDPAA-ENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l-~~~~G~v~i~g~d~~~-~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l 81 (247)
++.|.|||++||||++|.++-.. -++-|... |+. ..+++ ++.++-++|-..+.. .....+
T Consensus 609 ~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~~V-----Pa~~a~i~~-----------~d~I~triga~d~i~--~g~STF 670 (854)
T PRK05399 609 LLLITGPNMAGKSTYMRQVALIVLLAQIGSFV-----PAESARIGI-----------VDRIFTRIGASDDLA--SGRSTF 670 (854)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHHhcCCce-----eccceEecc-----------cCeeeeccCcccccc--cCcccH
Confidence 67899999999999999986431 12223211 111 11221 112223333322211 111233
Q ss_pred hhhHHHHHHHHhhcCCCCCEEEEeCC---Cc-ccHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025844 82 EDNLDDWLAEELDNYLDDDYLVFDCP---GQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (247)
Q Consensus 82 ~~~~~~~la~al~~~~~p~~lilDEP---t~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v 136 (247)
...+ ..++..+...+++.++|+||| |+ .|-.+ +...+++.+.+. +.+++++
T Consensus 671 ~~E~-~~~~~il~~at~~sLvllDE~GrGTs~~dg~a---ia~aile~l~~~~~~~~l~a 726 (854)
T PRK05399 671 MVEM-TETANILNNATERSLVLLDEIGRGTSTYDGLS---IAWAVAEYLHDKIGAKTLFA 726 (854)
T ss_pred HHHH-HHHHHHHHhCCCCcEEEEecCCCCCCcchhHH---HHHHHHHHHHhcCCceEEEE
Confidence 3334 555655554448899999999 66 77433 343788888765 3555433
No 497
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.15 E-value=3.1e-05 Score=62.06 Aligned_cols=22 Identities=18% Similarity=0.489 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
-++|+|++|||||||++.+.+-
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999763
No 498
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.15 E-value=5.6e-06 Score=83.78 Aligned_cols=71 Identities=17% Similarity=0.141 Sum_probs=55.2
Q ss_pred HHHHHcCCCCC-CchhhhHHhhhhhH--HHHHHHHhhcCCCC--CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEE
Q 025844 61 DVMEELGLGPN-GGLIYCMEHLEDNL--DDWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC 134 (247)
Q Consensus 61 ~~l~~~~L~~~-~~~~~~~~~l~~~~--~~~la~al~~~~~p--~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii 134 (247)
+.+..+||+.. .++. ...+++|. ++.||++++. +| +++||||||+ ||+.....++ +++++++++|.+|+
T Consensus 469 ~~L~~vgL~~l~l~r~--~~tLSGGE~QRv~LA~aL~~--~~~~~llILDEPtagLD~~~~~~L~-~~L~~L~~~G~TVI 543 (924)
T TIGR00630 469 GFLIDVGLDYLTLSRA--AGTLSGGEAQRIRLATQIGS--GLTGVLYVLDEPSIGLHQRDNERLI-NTLKRLRDLGNTVI 543 (924)
T ss_pred HhHhhccccccccCCC--cCcCCHHHHHHHHHHHHHhh--CCCCcEEEEcCCccCCCHHHHHHHH-HHHHHHHhCCCEEE
Confidence 34667777643 2222 34566654 4899999998 75 8999999999 9999999999 99999987788887
Q ss_pred EE
Q 025844 135 AV 136 (247)
Q Consensus 135 ~v 136 (247)
+|
T Consensus 544 vV 545 (924)
T TIGR00630 544 VV 545 (924)
T ss_pred EE
Confidence 77
No 499
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.15 E-value=1.5e-05 Score=66.47 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+.++|+|++|||||||++.+++-
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcc
Confidence 57899999999999999999975
No 500
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.14 E-value=9.7e-05 Score=63.20 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=22.5
Q ss_pred EEEEcCCCCcHHHHHHHHH-hCCcCCCceE
Q 025844 5 QLVIGPAGSGKSTYCSSLY-RHCETVRRTM 33 (247)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~-g~l~~~~G~v 33 (247)
++++|++|+|||||++.+. |...+..|..
T Consensus 2 v~~~G~~~~GKttl~~~~~~~~~~~~~~~~ 31 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQGELDNGRGKA 31 (224)
T ss_pred EEEECCCCCCHHHHHHHHHhCCcCCCCCeE
Confidence 5789999999999999998 5555544433
Done!