Query 025844
Match_columns 247
No_of_seqs 369 out of 3269
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 18:51:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025844.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025844hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 99.9 1.1E-27 3.8E-32 216.5 14.4 146 3-157 55-237 (366)
2 2onk_A Molybdate/tungstate ABC 99.9 2.1E-27 7.1E-32 203.9 13.6 140 4-152 26-195 (240)
3 3tif_A Uncharacterized ABC tra 99.9 2.4E-27 8.3E-32 202.8 13.4 129 3-136 32-202 (235)
4 2olj_A Amino acid ABC transpor 99.9 4.6E-27 1.6E-31 204.3 14.8 141 3-152 51-227 (263)
5 3fvq_A Fe(3+) IONS import ATP- 99.9 3.8E-27 1.3E-31 212.8 14.6 141 3-152 31-207 (359)
6 3rlf_A Maltose/maltodextrin im 99.9 3.8E-27 1.3E-31 214.1 14.3 141 3-152 30-202 (381)
7 2pcj_A ABC transporter, lipopr 99.9 1.5E-27 5.2E-32 202.6 10.9 129 3-136 31-196 (224)
8 3gfo_A Cobalt import ATP-bindi 99.9 4.9E-27 1.7E-31 205.4 14.4 141 3-152 35-212 (275)
9 1b0u_A Histidine permease; ABC 99.9 3.9E-27 1.3E-31 204.6 13.6 141 3-152 33-221 (262)
10 1vpl_A ABC transporter, ATP-bi 99.9 4.2E-27 1.4E-31 203.8 11.9 141 3-152 42-214 (256)
11 1ji0_A ABC transporter; ATP bi 99.9 1E-26 3.4E-31 199.5 12.8 141 3-152 33-207 (240)
12 2yyz_A Sugar ABC transporter, 99.9 1.4E-26 4.7E-31 209.3 14.2 141 3-152 30-202 (359)
13 1z47_A CYSA, putative ABC-tran 99.9 1.2E-26 4.2E-31 209.3 13.8 141 3-152 42-214 (355)
14 1g6h_A High-affinity branched- 99.9 1.2E-26 4E-31 200.9 13.1 141 3-152 34-221 (257)
15 2it1_A 362AA long hypothetical 99.9 1.8E-26 6.1E-31 208.8 14.7 142 3-153 30-203 (362)
16 4g1u_C Hemin import ATP-bindin 99.9 2.6E-26 9E-31 199.8 15.1 143 3-152 38-216 (266)
17 3d31_A Sulfate/molybdate ABC t 99.9 2.2E-26 7.4E-31 207.3 14.6 141 3-152 27-196 (348)
18 1sgw_A Putative ABC transporte 99.9 1.3E-26 4.5E-31 195.7 11.0 140 3-152 36-201 (214)
19 1v43_A Sugar-binding transport 99.9 2.4E-26 8.4E-31 208.6 12.7 142 3-153 38-211 (372)
20 1g29_1 MALK, maltose transport 99.9 3.3E-26 1.1E-30 207.9 13.0 143 3-154 30-210 (372)
21 1oxx_K GLCV, glucose, ABC tran 99.9 2.2E-26 7.5E-31 207.7 11.3 141 3-152 32-209 (353)
22 2ihy_A ABC transporter, ATP-bi 99.9 2.7E-26 9.2E-31 201.0 11.3 141 3-152 48-231 (279)
23 2qi9_C Vitamin B12 import ATP- 99.9 6.6E-26 2.3E-30 195.5 13.0 140 3-152 27-201 (249)
24 2yz2_A Putative ABC transporte 99.9 7.4E-26 2.5E-30 196.9 13.2 141 3-152 34-206 (266)
25 2d2e_A SUFC protein; ABC-ATPas 99.9 1.4E-25 4.9E-30 193.4 10.5 129 3-136 30-199 (250)
26 2ff7_A Alpha-hemolysin translo 99.9 5.9E-25 2E-29 189.3 12.0 130 3-136 36-200 (247)
27 2nq2_C Hypothetical ABC transp 99.9 5.6E-25 1.9E-29 190.1 11.9 141 3-152 32-197 (253)
28 2zu0_C Probable ATP-dependent 99.9 1.1E-24 3.6E-29 189.7 12.6 130 3-136 47-220 (267)
29 1mv5_A LMRA, multidrug resista 99.9 1.2E-24 4E-29 186.9 11.3 130 3-136 29-194 (243)
30 2ixe_A Antigen peptide transpo 99.9 1.3E-24 4.5E-29 189.5 11.8 129 3-136 46-213 (271)
31 2pjz_A Hypothetical protein ST 99.9 3.7E-24 1.3E-28 185.9 11.4 136 4-152 32-193 (263)
32 3nh6_A ATP-binding cassette SU 99.9 2.5E-24 8.6E-29 190.7 5.3 130 3-136 81-245 (306)
33 2ghi_A Transport protein; mult 99.9 3.9E-23 1.3E-27 179.2 11.7 129 3-136 47-210 (260)
34 2pze_A Cystic fibrosis transme 99.9 2.4E-23 8E-28 177.3 9.2 129 3-136 35-186 (229)
35 3ozx_A RNAse L inhibitor; ATP 99.9 3.2E-23 1.1E-27 196.5 9.4 145 3-156 295-458 (538)
36 2cbz_A Multidrug resistance-as 99.9 2.1E-23 7E-28 178.5 7.0 129 3-136 32-185 (237)
37 3gd7_A Fusion complex of cysti 99.9 8.3E-23 2.8E-27 186.4 8.3 130 3-137 48-211 (390)
38 3b5x_A Lipid A export ATP-bind 99.9 4.1E-22 1.4E-26 190.5 12.6 130 3-136 370-535 (582)
39 1yqt_A RNAse L inhibitor; ATP- 99.9 2.8E-22 9.7E-27 190.0 10.5 129 3-136 48-214 (538)
40 3bk7_A ABC transporter ATP-bin 99.9 5.9E-22 2E-26 190.1 11.9 144 3-156 383-544 (607)
41 3bk7_A ABC transporter ATP-bin 99.9 2.5E-22 8.7E-27 192.7 9.2 129 3-136 118-284 (607)
42 3b60_A Lipid A export ATP-bind 99.9 4.9E-22 1.7E-26 190.0 11.0 130 3-136 370-535 (582)
43 3ozx_A RNAse L inhibitor; ATP 99.9 3.2E-22 1.1E-26 189.6 9.2 141 3-153 26-206 (538)
44 2yl4_A ATP-binding cassette SU 99.9 4.2E-22 1.4E-26 190.9 9.6 130 3-136 371-538 (595)
45 4a82_A Cystic fibrosis transme 99.9 2.7E-22 9.4E-27 191.6 7.4 128 3-136 368-532 (578)
46 1yqt_A RNAse L inhibitor; ATP- 99.9 5.9E-22 2E-26 187.9 9.0 144 3-156 313-474 (538)
47 3qf4_B Uncharacterized ABC tra 99.9 4.1E-22 1.4E-26 191.1 7.6 135 3-145 382-551 (598)
48 3qf4_A ABC transporter, ATP-bi 99.9 2.5E-21 8.5E-26 185.3 12.7 128 3-136 370-534 (587)
49 2bbs_A Cystic fibrosis transme 99.8 4E-22 1.4E-26 175.4 5.5 129 3-136 65-215 (290)
50 3j16_B RLI1P; ribosome recycli 99.8 1.6E-21 5.4E-26 187.1 9.3 144 4-157 380-541 (608)
51 3j16_B RLI1P; ribosome recycli 99.8 1.8E-21 6.1E-26 186.7 7.3 142 3-153 104-290 (608)
52 3g5u_A MCG1178, multidrug resi 99.8 2.4E-19 8.3E-24 184.6 10.9 130 3-136 417-581 (1284)
53 4f4c_A Multidrug resistance pr 99.8 5.2E-19 1.8E-23 182.6 12.9 155 3-181 1106-1297(1321)
54 3g5u_A MCG1178, multidrug resi 99.8 5.6E-19 1.9E-23 181.9 12.5 130 3-136 1060-1226(1284)
55 3ux8_A Excinuclease ABC, A sub 99.8 1.2E-18 3.9E-23 169.1 12.4 129 3-136 45-260 (670)
56 2iw3_A Elongation factor 3A; a 99.7 3.7E-19 1.3E-23 177.4 4.9 84 59-152 880-966 (986)
57 4f4c_A Multidrug resistance pr 99.7 2.4E-18 8.3E-23 177.6 11.1 130 3-136 445-609 (1321)
58 3b85_A Phosphate starvation-in 99.7 3.7E-19 1.3E-23 149.3 2.6 122 3-134 23-153 (208)
59 2iw3_A Elongation factor 3A; a 99.7 1E-17 3.5E-22 167.1 11.1 121 3-136 462-601 (986)
60 1yrb_A ATP(GTP)binding protein 99.7 1.2E-16 4.2E-21 136.6 16.4 229 2-243 14-253 (262)
61 4gp7_A Metallophosphoesterase; 99.7 1.9E-18 6.4E-23 140.1 2.3 49 85-136 90-155 (171)
62 3ux8_A Excinuclease ABC, A sub 99.7 3.7E-17 1.3E-21 158.5 10.7 74 59-136 523-602 (670)
63 1tq4_A IIGP1, interferon-induc 99.7 3.4E-18 1.2E-22 157.0 1.0 145 3-155 70-248 (413)
64 2npi_A Protein CLP1; CLP1-PCF1 99.7 6.6E-18 2.2E-22 157.2 1.1 120 4-136 140-294 (460)
65 1ye8_A Protein THEP1, hypothet 99.7 4.3E-17 1.5E-21 133.4 5.3 130 4-150 2-149 (178)
66 3b9q_A Chloroplast SRP recepto 99.6 4.3E-16 1.5E-20 137.6 8.6 126 3-141 101-258 (302)
67 2og2_A Putative signal recogni 99.6 2.1E-15 7.3E-20 136.1 9.7 147 3-171 158-336 (359)
68 2vf7_A UVRA2, excinuclease ABC 99.6 2.2E-15 7.7E-20 148.7 8.4 73 59-136 710-789 (842)
69 3szr_A Interferon-induced GTP- 99.6 6.4E-16 2.2E-20 148.4 3.2 157 5-181 48-230 (608)
70 3sop_A Neuronal-specific septi 99.6 5.3E-16 1.8E-20 134.9 1.3 118 2-136 2-146 (270)
71 3pih_A Uvrabc system protein A 99.6 2.5E-14 8.4E-19 142.4 13.4 73 59-136 785-864 (916)
72 4aby_A DNA repair protein RECN 99.6 4.8E-15 1.6E-19 135.2 7.7 52 81-136 296-352 (415)
73 2r6f_A Excinuclease ABC subuni 99.5 1.8E-14 6.1E-19 143.2 12.0 73 59-136 825-904 (972)
74 2eyu_A Twitching motility prot 99.5 1.9E-14 6.4E-19 124.5 10.7 102 3-136 26-129 (261)
75 2pt7_A CAG-ALFA; ATPase, prote 99.5 2.7E-14 9.3E-19 127.5 11.7 100 3-136 172-271 (330)
76 2ehv_A Hypothetical protein PH 99.5 1.4E-15 4.8E-20 128.6 1.9 123 3-137 31-179 (251)
77 2ygr_A Uvrabc system protein A 99.5 4.6E-14 1.6E-18 140.6 11.1 72 60-136 844-922 (993)
78 1e69_A Chromosome segregation 99.5 1.3E-13 4.4E-18 122.4 12.0 54 79-136 218-278 (322)
79 1znw_A Guanylate kinase, GMP k 99.5 9.7E-16 3.3E-20 127.5 -3.1 58 92-156 137-200 (207)
80 4a74_A DNA repair and recombin 99.4 3.6E-13 1.2E-17 112.3 9.8 37 3-39 26-69 (231)
81 1rj9_A FTSY, signal recognitio 99.4 2E-13 6.8E-18 120.6 7.9 128 3-140 103-258 (304)
82 3jvv_A Twitching mobility prot 99.4 5.7E-13 2E-17 120.1 9.8 103 3-136 124-227 (356)
83 2kjq_A DNAA-related protein; s 99.4 8.2E-13 2.8E-17 104.8 8.7 98 4-153 38-138 (149)
84 3thx_A DNA mismatch repair pro 99.4 3.8E-13 1.3E-17 134.3 7.4 107 3-136 663-781 (934)
85 3qf7_A RAD50; ABC-ATPase, ATPa 99.4 1.9E-12 6.4E-17 117.0 10.8 55 79-136 278-341 (365)
86 3aez_A Pantothenate kinase; tr 99.4 3.2E-14 1.1E-18 126.2 -1.1 105 3-112 91-209 (312)
87 2w0m_A SSO2452; RECA, SSPF, un 99.4 1E-12 3.5E-17 109.4 8.1 126 3-136 24-164 (235)
88 1tf7_A KAIC; homohexamer, hexa 99.4 3.4E-13 1.2E-17 127.3 5.6 121 3-136 282-413 (525)
89 2o8b_B DNA mismatch repair pro 99.3 5.1E-13 1.7E-17 134.7 5.3 114 3-136 790-908 (1022)
90 1cr0_A DNA primase/helicase; R 99.3 1.2E-12 4.2E-17 114.2 6.5 127 3-137 36-194 (296)
91 1tf7_A KAIC; homohexamer, hexa 99.3 3.1E-13 1.1E-17 127.5 2.1 126 3-136 40-181 (525)
92 3thx_B DNA mismatch repair pro 99.3 1E-12 3.5E-17 130.9 5.1 113 3-136 674-792 (918)
93 2ewv_A Twitching motility prot 99.3 1.1E-11 3.6E-16 112.4 10.0 116 3-155 137-254 (372)
94 1ewq_A DNA mismatch repair pro 99.3 2E-12 7E-17 126.8 5.6 104 4-136 578-694 (765)
95 3e70_C DPA, signal recognition 99.3 1.1E-11 3.6E-16 110.7 9.7 145 2-171 129-301 (328)
96 3qkt_A DNA double-strand break 99.3 2.4E-11 8.2E-16 108.5 11.9 55 79-136 247-310 (339)
97 2i3b_A HCR-ntpase, human cance 99.3 1.4E-13 4.9E-18 113.5 -2.7 35 4-40 3-37 (189)
98 3ec2_A DNA replication protein 99.3 6.6E-12 2.3E-16 101.5 6.5 97 3-136 39-139 (180)
99 1nlf_A Regulatory protein REPA 99.2 8.8E-12 3E-16 108.0 7.1 126 3-137 31-178 (279)
100 1pzn_A RAD51, DNA repair and r 99.2 6.4E-12 2.2E-16 112.9 6.1 38 3-40 132-176 (349)
101 1z6g_A Guanylate kinase; struc 99.2 7.1E-13 2.4E-17 111.3 -2.0 111 3-126 24-173 (218)
102 1wb9_A DNA mismatch repair pro 99.2 1.4E-11 4.7E-16 121.5 5.0 109 3-136 608-726 (800)
103 3asz_A Uridine kinase; cytidin 99.1 1E-12 3.5E-17 108.8 -3.6 121 2-133 6-154 (211)
104 1s96_A Guanylate kinase, GMP k 99.1 1.4E-11 4.9E-16 103.7 2.0 113 3-136 17-136 (219)
105 2cvh_A DNA repair and recombin 99.1 5.8E-10 2E-14 92.1 11.2 116 3-137 21-153 (220)
106 2dpy_A FLII, flagellum-specifi 99.1 4.2E-11 1.4E-15 110.7 4.6 141 3-159 158-330 (438)
107 1n0w_A DNA repair protein RAD5 99.1 6.1E-10 2.1E-14 93.4 11.1 37 3-39 25-68 (243)
108 2obl_A ESCN; ATPase, hydrolase 99.1 1.5E-10 5.1E-15 104.0 7.3 144 3-161 72-243 (347)
109 2bbw_A Adenylate kinase 4, AK4 99.1 5.3E-12 1.8E-16 107.4 -2.4 37 3-39 28-67 (246)
110 1sxj_E Activator 1 40 kDa subu 99.1 3.7E-10 1.3E-14 100.2 9.0 116 5-136 39-170 (354)
111 1lw7_A Transcriptional regulat 99.1 6E-11 2.1E-15 106.8 3.7 128 3-136 171-325 (365)
112 1vma_A Cell division protein F 99.0 4.8E-10 1.6E-14 99.0 8.5 91 2-109 104-197 (306)
113 1ls1_A Signal recognition part 99.0 1.5E-09 5.2E-14 95.2 11.3 107 3-126 99-209 (295)
114 2qag_C Septin-7; cell cycle, c 99.0 2.2E-10 7.4E-15 105.3 5.8 126 3-141 32-179 (418)
115 1htw_A HI0065; nucleotide-bind 99.0 1.5E-10 5.1E-15 92.7 2.8 37 3-40 34-70 (158)
116 2v9p_A Replication protein E1; 99.0 3.1E-11 1.1E-15 106.5 -2.2 98 3-119 127-233 (305)
117 3lda_A DNA repair protein RAD5 98.9 4E-09 1.4E-13 96.3 10.6 119 3-137 179-325 (400)
118 1pui_A ENGB, probable GTP-bind 98.9 4.8E-10 1.7E-14 91.9 3.8 124 3-130 27-200 (210)
119 2gza_A Type IV secretion syste 98.9 9.1E-09 3.1E-13 92.6 11.6 99 3-128 176-275 (361)
120 2yhs_A FTSY, cell division pro 98.9 1.2E-08 4.1E-13 95.2 11.7 38 3-40 294-331 (503)
121 2px0_A Flagellar biosynthesis 98.9 9.4E-09 3.2E-13 90.2 10.4 87 3-109 106-193 (296)
122 2qag_B Septin-6, protein NEDD5 98.9 2.2E-09 7.6E-14 98.6 6.5 47 87-136 167-215 (427)
123 2qnr_A Septin-2, protein NEDD5 98.8 4.7E-09 1.6E-13 92.2 7.4 36 3-39 19-55 (301)
124 3euj_A Chromosome partition pr 98.8 1.9E-09 6.5E-14 100.5 2.5 37 4-40 31-67 (483)
125 3kl4_A SRP54, signal recogniti 98.8 4.7E-08 1.6E-12 90.1 11.5 152 2-180 97-253 (433)
126 2jeo_A Uridine-cytidine kinase 98.7 1.1E-09 3.7E-14 93.0 0.2 25 2-26 25-49 (245)
127 2dr3_A UPF0273 protein PH0284; 98.7 2.1E-08 7.1E-13 84.0 7.9 40 98-137 128-170 (247)
128 2p67_A LAO/AO transport system 98.7 4.8E-08 1.6E-12 87.1 10.7 40 3-42 57-96 (341)
129 1sq5_A Pantothenate kinase; P- 98.7 1.2E-08 4E-13 89.8 6.1 37 3-39 81-122 (308)
130 1oix_A RAS-related protein RAB 98.7 1.6E-08 5.5E-13 82.2 6.0 36 3-38 30-76 (191)
131 1zp6_A Hypothetical protein AT 98.7 1.6E-08 5.6E-13 81.8 4.6 35 3-39 10-44 (191)
132 3pih_A Uvrabc system protein A 98.6 3E-08 1E-12 98.8 6.9 109 23-136 389-522 (916)
133 1f2t_B RAD50 ABC-ATPase; DNA d 98.6 4.5E-08 1.5E-12 77.4 6.2 55 79-136 56-119 (148)
134 2zr9_A Protein RECA, recombina 98.6 1E-07 3.4E-12 85.5 9.2 90 3-110 62-152 (349)
135 3a00_A Guanylate kinase, GMP k 98.6 1.4E-08 4.7E-13 82.5 3.0 29 4-32 3-31 (186)
136 1qhl_A Protein (cell division 98.6 1.5E-09 5.3E-14 91.8 -2.8 37 4-40 29-65 (227)
137 2qm8_A GTPase/ATPase; G protei 98.6 1.3E-08 4.6E-13 90.7 3.1 40 3-42 56-95 (337)
138 2bdt_A BH3686; alpha-beta prot 98.6 2.4E-08 8.3E-13 80.9 4.3 37 1-40 1-37 (189)
139 2f1r_A Molybdopterin-guanine d 98.6 5.6E-09 1.9E-13 84.5 -0.1 39 1-39 1-42 (171)
140 3pqc_A Probable GTP-binding pr 98.6 3.2E-06 1.1E-10 67.5 16.3 23 3-25 24-46 (195)
141 3lxx_A GTPase IMAP family memb 98.6 1.1E-06 3.7E-11 73.8 13.6 28 3-30 30-57 (239)
142 1j8m_F SRP54, signal recogniti 98.6 9.8E-07 3.4E-11 77.3 13.3 39 3-41 99-137 (297)
143 3c8u_A Fructokinase; YP_612366 98.5 1.7E-08 5.9E-13 83.4 1.9 38 3-40 23-63 (208)
144 1p9r_A General secretion pathw 98.5 3.6E-08 1.2E-12 90.5 4.1 38 3-40 168-205 (418)
145 1u0l_A Probable GTPase ENGC; p 98.5 3.4E-08 1.2E-12 86.6 3.7 38 3-40 170-210 (301)
146 4dhe_A Probable GTP-binding pr 98.5 6.7E-06 2.3E-10 67.5 17.4 23 3-25 30-52 (223)
147 3tqc_A Pantothenate kinase; bi 98.5 5E-08 1.7E-12 86.5 4.2 39 2-40 92-132 (321)
148 3t34_A Dynamin-related protein 98.5 6E-07 2.1E-11 80.3 11.3 30 4-33 36-67 (360)
149 1udx_A The GTP-binding protein 98.5 2.1E-08 7.1E-13 92.0 1.6 136 4-154 159-319 (416)
150 1lvg_A Guanylate kinase, GMP k 98.5 3.4E-08 1.2E-12 81.3 2.4 25 3-27 5-29 (198)
151 1fnn_A CDC6P, cell division co 98.5 4.1E-07 1.4E-11 81.0 9.6 116 4-136 46-165 (389)
152 1rz3_A Hypothetical protein rb 98.5 4.8E-08 1.6E-12 80.3 3.2 39 2-40 22-60 (201)
153 1zu4_A FTSY; GTPase, signal re 98.5 1.4E-07 4.6E-12 83.7 6.3 39 3-41 106-144 (320)
154 3tr0_A Guanylate kinase, GMP k 98.5 7.8E-08 2.7E-12 78.5 3.6 32 3-38 8-39 (205)
155 1odf_A YGR205W, hypothetical 3 98.5 1.1E-08 3.9E-13 89.4 -1.5 28 2-29 31-58 (290)
156 2oap_1 GSPE-2, type II secreti 98.4 1.2E-07 4E-12 89.2 4.7 37 3-39 261-297 (511)
157 1nij_A Hypothetical protein YJ 98.4 7.3E-08 2.5E-12 85.1 2.8 39 3-41 5-51 (318)
158 3p32_A Probable GTPase RV1496/ 98.4 2.8E-06 9.7E-11 76.0 13.2 42 2-43 79-120 (355)
159 3hr8_A Protein RECA; alpha and 98.4 1.1E-06 3.6E-11 79.1 10.2 89 3-109 62-150 (356)
160 1svi_A GTP-binding protein YSX 98.4 1.7E-05 5.7E-10 63.5 16.4 23 3-25 24-46 (195)
161 2yv5_A YJEQ protein; hydrolase 98.4 1.5E-07 5E-12 82.7 4.3 37 3-40 166-205 (302)
162 2ffh_A Protein (FFH); SRP54, s 98.4 5.7E-06 1.9E-10 76.0 14.3 39 3-41 99-137 (425)
163 3lnc_A Guanylate kinase, GMP k 98.4 1.1E-07 3.8E-12 79.6 2.4 26 3-28 28-54 (231)
164 2rcn_A Probable GTPase ENGC; Y 98.4 2E-07 6.9E-12 83.8 4.3 36 3-38 216-253 (358)
165 4eun_A Thermoresistant glucoki 98.4 1.8E-07 6E-12 76.7 3.5 34 3-40 30-63 (200)
166 3dm5_A SRP54, signal recogniti 98.3 5E-06 1.7E-10 76.7 13.1 102 2-117 100-203 (443)
167 3k53_A Ferrous iron transport 98.3 1.1E-06 3.7E-11 75.5 8.0 24 3-26 4-27 (271)
168 4e22_A Cytidylate kinase; P-lo 98.3 5.4E-08 1.8E-12 83.1 -0.3 32 3-34 28-62 (252)
169 1kgd_A CASK, peripheral plasma 98.3 1.9E-07 6.7E-12 75.3 3.0 38 3-40 6-44 (180)
170 2ged_A SR-beta, signal recogni 98.3 1.6E-06 5.6E-11 69.5 7.9 24 3-26 49-72 (193)
171 1jjv_A Dephospho-COA kinase; P 98.3 4.4E-07 1.5E-11 74.3 4.4 32 1-37 1-32 (206)
172 3uie_A Adenylyl-sulfate kinase 98.3 2E-07 7E-12 76.3 2.3 37 3-40 26-64 (200)
173 1t9h_A YLOQ, probable GTPase E 98.3 1.1E-07 3.8E-12 83.8 0.7 33 3-35 174-206 (307)
174 1kag_A SKI, shikimate kinase I 98.3 2.8E-07 9.6E-12 73.2 3.0 28 1-28 3-30 (173)
175 2j41_A Guanylate kinase; GMP, 98.3 3.5E-07 1.2E-11 74.5 3.5 29 3-31 7-35 (207)
176 2vp4_A Deoxynucleoside kinase; 98.3 3.7E-07 1.3E-11 76.6 3.5 34 3-40 21-54 (230)
177 1c1y_A RAS-related protein RAP 98.3 1.1E-05 3.6E-10 62.6 11.6 23 3-25 4-26 (167)
178 3iev_A GTP-binding protein ERA 98.3 8.9E-06 3E-10 71.3 12.3 23 3-25 11-33 (308)
179 2www_A Methylmalonic aciduria 98.3 3.5E-07 1.2E-11 81.9 3.3 41 3-43 75-115 (349)
180 2r6a_A DNAB helicase, replicat 98.3 1E-06 3.5E-11 81.4 6.5 131 4-137 205-361 (454)
181 2r6f_A Excinuclease ABC subuni 98.3 2.2E-06 7.5E-11 85.5 9.1 70 62-136 487-562 (972)
182 1kao_A RAP2A; GTP-binding prot 98.3 1.4E-05 4.7E-10 61.8 11.9 22 3-24 4-25 (167)
183 1ega_A Protein (GTP-binding pr 98.3 7.2E-06 2.5E-10 71.7 11.4 23 3-25 9-31 (301)
184 2vf7_A UVRA2, excinuclease ABC 98.3 2.4E-06 8.2E-11 84.5 9.2 70 62-136 362-437 (842)
185 2a9k_A RAS-related protein RAL 98.3 1.2E-05 4E-10 63.6 11.7 23 3-25 19-41 (187)
186 1nrj_B SR-beta, signal recogni 98.3 6.4E-06 2.2E-10 67.4 10.5 24 3-26 13-36 (218)
187 3kta_A Chromosome segregation 98.2 5.3E-07 1.8E-11 72.3 3.4 29 4-32 28-56 (182)
188 3kta_B Chromosome segregation 98.2 1.4E-06 4.8E-11 70.5 5.8 57 78-136 62-123 (173)
189 2z4s_A Chromosomal replication 98.2 3.2E-06 1.1E-10 77.9 8.9 98 4-136 132-233 (440)
190 2ygr_A Uvrabc system protein A 98.2 2.3E-06 7.9E-11 85.6 8.3 70 62-136 504-579 (993)
191 2ce2_X GTPase HRAS; signaling 98.2 5.4E-06 1.8E-10 63.9 8.8 23 3-25 4-26 (166)
192 2v3c_C SRP54, signal recogniti 98.2 2E-06 6.7E-11 79.2 6.9 39 3-41 100-138 (432)
193 1knq_A Gluconate kinase; ALFA/ 98.2 8E-07 2.7E-11 70.8 3.7 34 3-40 9-42 (175)
194 1ky3_A GTP-binding protein YPT 98.2 5.3E-06 1.8E-10 65.3 8.4 23 3-25 9-31 (182)
195 1l8q_A Chromosomal replication 98.2 7.6E-06 2.6E-10 71.7 10.0 97 4-136 39-137 (324)
196 2fn4_A P23, RAS-related protei 98.2 1E-05 3.5E-10 63.6 9.8 23 3-25 10-32 (181)
197 3tau_A Guanylate kinase, GMP k 98.2 9.2E-07 3.1E-11 73.0 3.7 33 3-35 9-42 (208)
198 2bov_A RAla, RAS-related prote 98.2 2E-05 6.9E-10 63.5 11.5 23 3-25 15-37 (206)
199 1wms_A RAB-9, RAB9, RAS-relate 98.2 1.3E-05 4.5E-10 62.9 10.0 23 3-25 8-30 (177)
200 2f9l_A RAB11B, member RAS onco 98.1 8.9E-07 3E-11 71.9 3.0 24 3-26 6-29 (199)
201 1cke_A CK, MSSA, protein (cyti 98.1 3E-07 1E-11 76.2 0.2 34 2-35 5-41 (227)
202 2dyk_A GTP-binding protein; GT 98.1 9.8E-06 3.3E-10 62.6 8.8 23 3-25 2-24 (161)
203 2x8a_A Nuclear valosin-contain 98.1 1.5E-06 5E-11 75.2 4.1 35 4-40 46-80 (274)
204 3bos_A Putative DNA replicatio 98.1 5.7E-06 2E-10 68.3 7.2 34 3-36 53-86 (242)
205 2cxx_A Probable GTP-binding pr 98.1 3.1E-05 1.1E-09 61.4 11.2 23 3-25 2-24 (190)
206 3i8s_A Ferrous iron transport 98.1 2E-06 6.9E-11 74.2 4.3 24 2-25 3-26 (274)
207 3k1j_A LON protease, ATP-depen 98.1 1.8E-05 6.2E-10 75.6 10.7 35 4-38 62-97 (604)
208 1ni3_A YCHF GTPase, YCHF GTP-b 98.1 2.7E-06 9.3E-11 77.3 4.6 36 2-37 20-67 (392)
209 2ius_A DNA translocase FTSK; n 98.0 1.7E-05 5.8E-10 74.4 9.7 38 5-42 170-209 (512)
210 2w58_A DNAI, primosome compone 98.0 4.5E-06 1.5E-10 67.9 5.1 33 3-35 55-87 (202)
211 1u8z_A RAS-related protein RAL 98.0 3.3E-05 1.1E-09 59.6 9.6 23 3-25 5-27 (168)
212 3ney_A 55 kDa erythrocyte memb 98.0 2.4E-06 8.3E-11 70.5 3.2 25 3-27 20-44 (197)
213 3cr8_A Sulfate adenylyltranfer 98.0 1.9E-06 6.5E-11 81.7 2.4 35 3-37 370-406 (552)
214 2if2_A Dephospho-COA kinase; a 98.0 3.3E-06 1.1E-10 68.8 3.5 22 3-24 2-23 (204)
215 2ce7_A Cell division protein F 98.0 3.7E-05 1.3E-09 71.5 10.6 24 3-26 50-73 (476)
216 2erx_A GTP-binding protein DI- 97.9 6.2E-05 2.1E-09 58.4 10.1 22 3-24 4-25 (172)
217 1np6_A Molybdopterin-guanine d 97.9 4.2E-06 1.4E-10 67.7 3.4 40 1-40 5-44 (174)
218 4gzl_A RAS-related C3 botulinu 97.9 0.00013 4.6E-09 59.2 12.4 23 3-25 31-53 (204)
219 1wb1_A Translation elongation 97.9 9.1E-05 3.1E-09 68.9 12.7 23 3-25 20-42 (482)
220 3iby_A Ferrous iron transport 97.9 2.7E-05 9.2E-10 66.5 8.3 22 4-25 3-24 (256)
221 4fcw_A Chaperone protein CLPB; 97.9 1.6E-05 5.6E-10 68.7 7.0 98 3-125 48-145 (311)
222 2j37_W Signal recognition part 97.9 9.7E-05 3.3E-09 69.2 12.6 38 3-40 102-139 (504)
223 1ixz_A ATP-dependent metallopr 97.9 5.9E-06 2E-10 69.8 4.0 33 4-38 51-83 (254)
224 3sjy_A Translation initiation 97.9 0.00011 3.9E-09 66.5 12.5 25 3-27 9-33 (403)
225 2qt1_A Nicotinamide riboside k 97.9 7.7E-06 2.6E-10 66.9 4.2 26 2-27 21-46 (207)
226 2yvu_A Probable adenylyl-sulfa 97.9 4.7E-06 1.6E-10 67.1 2.8 34 3-36 14-47 (186)
227 3def_A T7I23.11 protein; chlor 97.9 2.2E-05 7.5E-10 66.9 7.0 22 3-24 37-58 (262)
228 1in4_A RUVB, holliday junction 97.9 1.1E-06 3.8E-11 77.9 -1.2 35 3-37 52-90 (334)
229 1iy2_A ATP-dependent metallopr 97.9 6.1E-06 2.1E-10 70.9 3.5 33 4-38 75-107 (278)
230 1ly1_A Polynucleotide kinase; 97.9 8E-06 2.7E-10 64.7 3.8 24 1-24 1-24 (181)
231 3t61_A Gluconokinase; PSI-biol 97.9 5.9E-06 2E-10 67.4 3.1 25 2-26 18-42 (202)
232 3j2k_7 ERF3, eukaryotic polype 97.9 0.00027 9.3E-09 64.9 14.6 23 3-25 18-40 (439)
233 1jwy_B Dynamin A GTPase domain 97.9 0.00022 7.4E-09 61.8 13.2 24 3-26 25-48 (315)
234 2pez_A Bifunctional 3'-phospho 97.9 6.3E-06 2.1E-10 65.9 3.0 35 3-38 6-42 (179)
235 1u94_A RECA protein, recombina 97.9 3.4E-05 1.1E-09 69.2 8.0 36 3-38 64-99 (356)
236 4ad8_A DNA repair protein RECN 97.8 1.1E-05 3.6E-10 75.8 4.7 51 82-136 399-454 (517)
237 2qby_A CDC6 homolog 1, cell di 97.8 4.1E-06 1.4E-10 74.0 1.6 26 4-29 47-72 (386)
238 1v5w_A DMC1, meiotic recombina 97.8 0.00014 4.8E-09 64.6 11.5 23 3-25 123-145 (343)
239 2x2e_A Dynamin-1; nitration, h 97.8 0.00019 6.4E-09 63.9 12.3 23 4-26 33-55 (353)
240 3n70_A Transport activator; si 97.8 9.7E-05 3.3E-09 57.2 9.1 31 4-34 26-56 (145)
241 1w1w_A Structural maintenance 97.8 7.9E-06 2.7E-10 74.8 3.1 55 81-136 334-393 (430)
242 2aka_B Dynamin-1; fusion prote 97.8 0.00048 1.6E-08 59.0 14.3 24 3-26 27-50 (299)
243 1m7g_A Adenylylsulfate kinase; 97.8 5.2E-06 1.8E-10 68.4 1.6 36 2-37 25-62 (211)
244 1lnz_A SPO0B-associated GTP-bi 97.8 1.6E-05 5.6E-10 70.9 4.7 80 99-181 206-290 (342)
245 2v1u_A Cell division control p 97.8 3.7E-05 1.3E-09 67.9 6.9 25 4-28 46-70 (387)
246 1xp8_A RECA protein, recombina 97.7 0.00011 3.8E-09 66.0 9.6 116 4-137 76-208 (366)
247 1f2t_A RAD50 ABC-ATPase; DNA d 97.7 1.5E-05 5.2E-10 62.5 3.4 21 4-24 25-45 (149)
248 2z43_A DNA repair and recombin 97.7 0.0002 6.8E-09 63.0 10.8 24 3-26 108-131 (324)
249 2o5v_A DNA replication and rep 97.7 2.4E-05 8.3E-10 70.2 4.8 44 80-126 265-320 (359)
250 1qhx_A CPT, protein (chloramph 97.7 1.8E-05 6.1E-10 62.8 3.3 27 1-27 2-28 (178)
251 3h4m_A Proteasome-activating n 97.7 0.00043 1.5E-08 59.0 12.2 24 3-26 52-75 (285)
252 1xjc_A MOBB protein homolog; s 97.7 1.8E-05 6.2E-10 63.7 3.3 40 2-41 4-43 (169)
253 3kb2_A SPBC2 prophage-derived 97.7 1.9E-05 6.4E-10 62.1 3.3 24 3-26 2-25 (173)
254 4eaq_A DTMP kinase, thymidylat 97.7 2.6E-05 8.9E-10 65.5 4.3 33 3-36 27-59 (229)
255 2e87_A Hypothetical protein PH 97.7 1.9E-05 6.3E-10 70.6 3.6 24 3-26 168-191 (357)
256 3r7w_A Gtpase1, GTP-binding pr 97.7 0.00031 1.1E-08 61.3 11.2 23 3-25 4-26 (307)
257 2xxa_A Signal recognition part 97.7 0.00061 2.1E-08 62.6 13.2 40 2-41 100-140 (433)
258 3lw7_A Adenylate kinase relate 97.7 2.4E-05 8.1E-10 61.2 3.2 20 3-22 2-21 (179)
259 2c78_A Elongation factor TU-A; 97.7 0.0012 4E-08 59.8 14.9 23 3-25 12-34 (405)
260 1via_A Shikimate kinase; struc 97.6 2.1E-05 7.3E-10 62.5 3.0 24 3-26 5-28 (175)
261 2dy1_A Elongation factor G; tr 97.6 0.0005 1.7E-08 66.4 12.9 31 3-33 10-42 (665)
262 3vaa_A Shikimate kinase, SK; s 97.6 2.9E-05 1E-09 63.2 3.5 24 3-26 26-49 (199)
263 1w1w_A Structural maintenance 97.6 8.4E-05 2.9E-09 67.9 6.9 27 3-29 27-53 (430)
264 3b9p_A CG5977-PA, isoform A; A 97.6 0.00017 5.7E-09 62.0 8.4 24 3-26 55-78 (297)
265 1e6c_A Shikimate kinase; phosp 97.6 3.1E-05 1.1E-09 61.0 3.2 26 1-26 1-26 (173)
266 2qor_A Guanylate kinase; phosp 97.6 2.6E-05 8.7E-10 63.8 2.7 25 3-27 13-37 (204)
267 2wji_A Ferrous iron transport 97.6 5.1E-05 1.7E-09 59.4 4.3 24 3-26 4-27 (165)
268 1mky_A Probable GTP-binding pr 97.6 5.2E-05 1.8E-09 69.5 4.9 36 3-38 181-228 (439)
269 3cm0_A Adenylate kinase; ATP-b 97.6 4E-05 1.4E-09 61.2 3.5 25 2-26 4-28 (186)
270 1qf9_A UMP/CMP kinase, protein 97.6 4.4E-05 1.5E-09 61.0 3.7 26 1-26 5-30 (194)
271 3auy_A DNA double-strand break 97.6 9.3E-05 3.2E-09 66.4 6.2 54 79-136 279-342 (371)
272 1uf9_A TT1252 protein; P-loop, 97.6 5.6E-05 1.9E-09 61.0 4.3 24 2-25 8-31 (203)
273 3r20_A Cytidylate kinase; stru 97.6 1.6E-05 5.4E-10 67.3 1.0 25 2-26 9-33 (233)
274 3ake_A Cytidylate kinase; CMP 97.6 4.2E-05 1.4E-09 62.0 3.5 26 1-26 1-26 (208)
275 1gtv_A TMK, thymidylate kinase 97.6 1E-05 3.5E-10 66.1 -0.2 32 4-35 2-33 (214)
276 2hjg_A GTP-binding protein ENG 97.6 0.00021 7.3E-09 65.4 8.6 23 3-25 176-198 (436)
277 1vht_A Dephospho-COA kinase; s 97.5 4.8E-05 1.6E-09 62.6 3.8 23 2-24 4-26 (218)
278 2p5t_B PEZT; postsegregational 97.5 3.6E-05 1.2E-09 65.3 3.1 35 2-38 32-66 (253)
279 4dcu_A GTP-binding protein ENG 97.5 0.00019 6.4E-09 66.1 8.0 23 2-24 23-45 (456)
280 3co5_A Putative two-component 97.5 0.00017 5.7E-09 55.7 6.5 42 98-140 75-116 (143)
281 1jny_A EF-1-alpha, elongation 97.5 0.00028 9.6E-09 64.6 9.0 23 3-25 7-29 (435)
282 2zej_A Dardarin, leucine-rich 97.5 4.3E-05 1.5E-09 61.0 3.2 25 3-27 3-27 (184)
283 2elf_A Protein translation elo 97.5 9E-05 3.1E-09 66.7 5.6 20 4-23 23-42 (370)
284 2j69_A Bacterial dynamin-like 97.5 0.00064 2.2E-08 66.0 12.0 25 2-26 69-93 (695)
285 2o5v_A DNA replication and rep 97.5 8.6E-05 2.9E-09 66.6 5.3 21 4-24 28-48 (359)
286 2iyv_A Shikimate kinase, SK; t 97.5 4.1E-05 1.4E-09 61.2 2.9 26 1-26 1-26 (184)
287 1ypw_A Transitional endoplasmi 97.5 0.00018 6.3E-09 71.0 8.0 26 3-28 239-264 (806)
288 2r8r_A Sensor protein; KDPD, P 97.5 0.00011 3.9E-09 61.7 5.6 40 2-41 6-45 (228)
289 1nks_A Adenylate kinase; therm 97.5 5.5E-05 1.9E-09 60.4 3.5 26 3-28 2-27 (194)
290 2qgz_A Helicase loader, putati 97.5 0.00017 5.8E-09 63.1 7.0 32 3-34 153-185 (308)
291 1tev_A UMP-CMP kinase; ploop, 97.5 5.9E-05 2E-09 60.3 3.7 25 2-26 3-27 (196)
292 2rhm_A Putative kinase; P-loop 97.5 6.1E-05 2.1E-09 60.3 3.7 25 2-26 5-29 (193)
293 2qtf_A Protein HFLX, GTP-bindi 97.5 5.4E-05 1.8E-09 68.0 3.7 24 4-27 181-204 (364)
294 4a1f_A DNAB helicase, replicat 97.5 9E-05 3.1E-09 66.0 5.1 35 4-38 48-82 (338)
295 2ze6_A Isopentenyl transferase 97.5 5.9E-05 2E-09 64.1 3.7 24 3-26 2-25 (253)
296 2wjg_A FEOB, ferrous iron tran 97.5 5.7E-05 1.9E-09 60.0 3.4 23 3-25 8-30 (188)
297 3qks_A DNA double-strand break 97.5 5.6E-05 1.9E-09 62.2 3.4 23 3-25 24-46 (203)
298 2hjg_A GTP-binding protein ENG 97.5 0.00031 1.1E-08 64.3 8.3 23 2-24 3-25 (436)
299 2jaq_A Deoxyguanosine kinase; 97.5 6.5E-05 2.2E-09 60.6 3.4 24 4-27 2-25 (205)
300 2bwj_A Adenylate kinase 5; pho 97.5 5.5E-05 1.9E-09 60.9 2.9 25 2-26 12-36 (199)
301 2qz4_A Paraplegin; AAA+, SPG7, 97.4 0.00086 2.9E-08 56.1 10.4 23 4-26 41-63 (262)
302 1svm_A Large T antigen; AAA+ f 97.4 6.2E-05 2.1E-09 68.0 3.3 30 3-35 170-199 (377)
303 3trf_A Shikimate kinase, SK; a 97.4 7.3E-05 2.5E-09 59.7 3.5 25 2-26 5-29 (185)
304 1kht_A Adenylate kinase; phosp 97.4 7.5E-05 2.6E-09 59.5 3.5 25 3-27 4-28 (192)
305 4dcu_A GTP-binding protein ENG 97.4 0.00055 1.9E-08 63.0 9.8 23 3-25 196-218 (456)
306 2plr_A DTMP kinase, probable t 97.4 9.7E-05 3.3E-09 59.9 4.1 31 3-34 5-35 (213)
307 3gee_A MNME, tRNA modification 97.4 0.00014 4.9E-09 67.6 5.5 23 3-25 234-256 (476)
308 2gj8_A MNME, tRNA modification 97.4 9.3E-05 3.2E-09 58.6 3.7 24 3-26 5-28 (172)
309 3nwj_A ATSK2; P loop, shikimat 97.4 7.2E-05 2.5E-09 63.8 3.1 24 3-26 49-72 (250)
310 2ohf_A Protein OLA1, GTP-bindi 97.4 7.6E-05 2.6E-09 67.8 3.2 24 2-25 22-45 (396)
311 3m6a_A ATP-dependent protease 97.4 4E-05 1.4E-09 72.4 1.3 34 4-37 110-143 (543)
312 1ltq_A Polynucleotide kinase; 97.4 0.00011 3.6E-09 63.5 3.8 24 1-24 1-24 (301)
313 3p26_A Elongation factor 1 alp 97.4 0.00081 2.8E-08 62.4 10.0 23 3-25 34-56 (483)
314 1gvn_B Zeta; postsegregational 97.4 0.00011 3.8E-09 63.7 3.9 33 2-36 33-65 (287)
315 3izq_1 HBS1P, elongation facto 97.4 0.0014 4.7E-08 62.7 11.9 23 3-25 168-190 (611)
316 4ag6_A VIRB4 ATPase, type IV s 97.3 9.3E-05 3.2E-09 66.6 3.4 34 4-37 37-70 (392)
317 1q3t_A Cytidylate kinase; nucl 97.3 0.00011 3.6E-09 61.5 3.4 25 2-26 16-40 (236)
318 1sxj_D Activator 1 41 kDa subu 97.3 0.00018 6.2E-09 63.0 5.0 23 5-27 61-83 (353)
319 1jal_A YCHF protein; nucleotid 97.3 0.00017 5.7E-09 64.8 4.8 25 1-25 1-25 (363)
320 2cdn_A Adenylate kinase; phosp 97.3 0.00012 4.2E-09 59.4 3.6 25 2-26 20-44 (201)
321 2v54_A DTMP kinase, thymidylat 97.3 0.00014 4.6E-09 58.9 3.8 25 2-26 4-28 (204)
322 2c95_A Adenylate kinase 1; tra 97.3 0.00013 4.4E-09 58.5 3.5 24 3-26 10-33 (196)
323 3d3q_A TRNA delta(2)-isopenten 97.3 0.00017 5.7E-09 64.3 4.5 27 1-27 6-32 (340)
324 2z0h_A DTMP kinase, thymidylat 97.3 0.00012 4.2E-09 58.7 3.3 30 4-33 2-31 (197)
325 1xwi_A SKD1 protein; VPS4B, AA 97.3 0.0036 1.2E-07 54.9 13.1 24 3-26 46-69 (322)
326 1y63_A LMAJ004144AAA protein; 97.3 0.00013 4.5E-09 58.6 3.5 23 3-25 11-33 (184)
327 2b8t_A Thymidine kinase; deoxy 97.3 0.00022 7.6E-09 59.8 4.8 34 3-36 13-46 (223)
328 1ex7_A Guanylate kinase; subst 97.3 0.00012 4.3E-09 59.6 3.2 22 5-26 4-25 (186)
329 1uj2_A Uridine-cytidine kinase 97.3 0.00014 4.9E-09 61.4 3.6 26 2-27 22-47 (252)
330 2wwf_A Thymidilate kinase, put 97.3 0.00015 5.1E-09 59.0 3.6 26 2-27 10-35 (212)
331 3fb4_A Adenylate kinase; psych 97.3 0.00014 4.7E-09 59.6 3.3 23 4-26 2-24 (216)
332 1ukz_A Uridylate kinase; trans 97.3 0.00016 5.4E-09 58.6 3.6 25 2-26 15-39 (203)
333 2chg_A Replication factor C sm 97.3 0.00028 9.7E-09 56.7 5.1 22 5-26 41-62 (226)
334 1sxj_C Activator 1 40 kDa subu 97.3 6.1E-05 2.1E-09 66.4 1.0 35 5-39 49-83 (340)
335 3io5_A Recombination and repai 97.3 0.0011 3.9E-08 58.5 9.1 117 4-137 30-169 (333)
336 3sr0_A Adenylate kinase; phosp 97.2 0.00015 5.3E-09 59.9 3.3 23 4-26 2-24 (206)
337 2pbr_A DTMP kinase, thymidylat 97.2 0.00016 5.6E-09 57.7 3.3 24 4-27 2-25 (195)
338 2vli_A Antibiotic resistance p 97.2 9.6E-05 3.3E-09 58.7 1.9 24 3-26 6-29 (183)
339 3dl0_A Adenylate kinase; phosp 97.2 0.00016 5.6E-09 59.2 3.3 23 4-26 2-24 (216)
340 2dhr_A FTSH; AAA+ protein, hex 97.2 0.00022 7.5E-09 66.7 4.5 36 3-40 65-100 (499)
341 1zak_A Adenylate kinase; ATP:A 97.2 0.00016 5.4E-09 59.7 3.1 24 3-26 6-29 (222)
342 3iij_A Coilin-interacting nucl 97.2 0.00017 5.8E-09 57.4 3.2 24 3-26 12-35 (180)
343 1zd8_A GTP:AMP phosphotransfer 97.2 0.00019 6.4E-09 59.5 3.5 24 3-26 8-31 (227)
344 1lv7_A FTSH; alpha/beta domain 97.2 0.00018 6.3E-09 60.6 3.4 25 3-27 46-70 (257)
345 3zvr_A Dynamin-1; hydrolase, D 97.2 0.0049 1.7E-07 60.4 13.7 23 4-26 53-75 (772)
346 2grj_A Dephospho-COA kinase; T 97.2 0.00021 7.2E-09 58.4 3.5 23 3-25 13-35 (192)
347 2pt5_A Shikimate kinase, SK; a 97.2 0.00021 7.3E-09 55.9 3.4 23 4-26 2-24 (168)
348 2f6r_A COA synthase, bifunctio 97.2 0.00021 7.3E-09 61.6 3.6 23 2-24 75-97 (281)
349 3a4m_A L-seryl-tRNA(SEC) kinas 97.2 0.00017 5.8E-09 61.4 2.9 26 2-27 4-29 (260)
350 1aky_A Adenylate kinase; ATP:A 97.2 0.00022 7.7E-09 58.7 3.5 24 3-26 5-28 (220)
351 3tlx_A Adenylate kinase 2; str 97.2 0.00023 8E-09 59.9 3.7 25 2-26 29-53 (243)
352 1f6b_A SAR1; gtpases, N-termin 97.2 0.00028 9.6E-09 57.0 3.9 22 3-24 26-47 (198)
353 2wsm_A Hydrogenase expression/ 97.1 0.00032 1.1E-08 57.4 4.3 37 3-40 31-67 (221)
354 2xau_A PRE-mRNA-splicing facto 97.1 0.00056 1.9E-08 67.2 6.7 25 4-28 111-135 (773)
355 1nn5_A Similar to deoxythymidy 97.1 0.00023 8E-09 57.8 3.4 26 2-27 9-34 (215)
356 3bh0_A DNAB-like replicative h 97.1 0.0028 9.7E-08 55.4 10.6 34 4-37 70-103 (315)
357 1m2o_B GTP-binding protein SAR 97.1 0.00027 9.3E-09 56.7 3.7 23 3-25 24-46 (190)
358 2i1q_A DNA repair and recombin 97.1 0.0026 9.1E-08 55.4 10.3 22 3-24 99-120 (322)
359 4b4t_J 26S protease regulatory 97.1 0.0051 1.7E-07 55.9 12.4 25 3-27 183-207 (405)
360 3syl_A Protein CBBX; photosynt 97.1 0.0028 9.7E-08 54.4 10.3 24 4-27 69-92 (309)
361 3umf_A Adenylate kinase; rossm 97.1 0.00025 8.7E-09 59.1 3.4 24 3-26 30-53 (217)
362 2qag_A Septin-2, protein NEDD5 97.1 0.00021 7.1E-09 64.0 2.8 29 3-31 38-66 (361)
363 1z2a_A RAS-related protein RAB 97.1 0.0003 1E-08 54.2 3.3 23 3-25 6-28 (168)
364 2xb4_A Adenylate kinase; ATP-b 97.1 0.00028 9.7E-09 58.5 3.4 23 4-26 2-24 (223)
365 1zuh_A Shikimate kinase; alpha 97.1 0.00031 1.1E-08 55.2 3.4 24 3-26 8-31 (168)
366 1a7j_A Phosphoribulokinase; tr 97.1 8.5E-05 2.9E-09 64.6 -0.0 26 2-27 5-30 (290)
367 3crm_A TRNA delta(2)-isopenten 97.1 0.00035 1.2E-08 61.8 3.8 27 1-27 4-30 (323)
368 3uk6_A RUVB-like 2; hexameric 97.0 0.004 1.4E-07 54.8 10.7 34 4-37 72-105 (368)
369 1e4v_A Adenylate kinase; trans 97.0 0.00033 1.1E-08 57.4 3.3 23 4-26 2-24 (214)
370 3cmu_A Protein RECA, recombina 97.0 0.0018 6.1E-08 69.2 9.5 119 3-139 1428-1563(2050)
371 2nzj_A GTP-binding protein REM 97.0 0.00037 1.3E-08 54.2 3.3 23 3-25 5-27 (175)
372 3q72_A GTP-binding protein RAD 97.0 0.00034 1.2E-08 54.0 2.9 23 3-25 3-25 (166)
373 3be4_A Adenylate kinase; malar 97.0 0.0004 1.4E-08 57.2 3.5 24 3-26 6-29 (217)
374 3b1v_A Ferrous iron uptake tra 97.0 0.00042 1.4E-08 59.6 3.6 25 2-26 3-27 (272)
375 1g16_A RAS-related protein SEC 97.0 0.00041 1.4E-08 53.5 3.3 23 3-25 4-26 (170)
376 3q85_A GTP-binding protein REM 97.0 0.00045 1.5E-08 53.5 3.5 23 3-25 3-25 (169)
377 3avx_A Elongation factor TS, e 97.0 0.0027 9.2E-08 64.8 9.9 23 3-25 297-319 (1289)
378 1fzq_A ADP-ribosylation factor 97.0 0.00037 1.3E-08 55.3 3.0 23 3-25 17-39 (181)
379 1z0j_A RAB-22, RAS-related pro 97.0 0.00047 1.6E-08 53.2 3.6 24 3-26 7-30 (170)
380 1ek0_A Protein (GTP-binding pr 97.0 0.00044 1.5E-08 53.3 3.3 23 3-25 4-26 (170)
381 1z08_A RAS-related protein RAB 97.0 0.00045 1.5E-08 53.4 3.4 23 3-25 7-29 (170)
382 2lkc_A Translation initiation 97.0 0.00047 1.6E-08 53.8 3.5 23 3-25 9-31 (178)
383 3ihw_A Centg3; RAS, centaurin, 97.0 0.00081 2.8E-08 53.6 4.9 23 3-25 21-43 (184)
384 3clv_A RAB5 protein, putative; 96.9 0.00054 1.9E-08 54.3 3.7 24 3-26 8-31 (208)
385 4dsu_A GTPase KRAS, isoform 2B 96.9 0.0005 1.7E-08 54.1 3.4 23 3-25 5-27 (189)
386 2h92_A Cytidylate kinase; ross 96.9 0.00043 1.5E-08 56.7 3.1 25 2-26 3-27 (219)
387 1upt_A ARL1, ADP-ribosylation 96.9 0.00056 1.9E-08 52.9 3.6 22 3-24 8-29 (171)
388 3tw8_B RAS-related protein RAB 96.9 0.00044 1.5E-08 54.0 3.0 23 3-25 10-32 (181)
389 1r2q_A RAS-related protein RAB 96.9 0.00051 1.8E-08 52.9 3.3 22 3-24 7-28 (170)
390 1ojl_A Transcriptional regulat 96.9 0.0027 9.2E-08 55.2 8.3 28 4-31 27-54 (304)
391 3kjh_A CO dehydrogenase/acetyl 96.9 0.0012 4.1E-08 54.6 5.8 37 5-41 3-39 (254)
392 3auy_A DNA double-strand break 96.9 0.00045 1.6E-08 61.8 3.4 21 3-23 26-46 (371)
393 2r2a_A Uncharacterized protein 96.9 0.00073 2.5E-08 55.5 4.3 22 1-22 4-25 (199)
394 1moz_A ARL1, ADP-ribosylation 96.9 0.00032 1.1E-08 55.2 2.1 22 3-24 19-40 (183)
395 2y8e_A RAB-protein 6, GH09086P 96.9 0.00055 1.9E-08 53.3 3.3 23 3-25 15-37 (179)
396 2hxs_A RAB-26, RAS-related pro 96.9 0.00061 2.1E-08 53.2 3.5 23 3-25 7-29 (178)
397 4b4t_L 26S protease subunit RP 96.9 0.0022 7.5E-08 58.9 7.7 25 3-27 216-240 (437)
398 3con_A GTPase NRAS; structural 96.9 0.0006 2E-08 54.1 3.3 23 3-25 22-44 (190)
399 1ak2_A Adenylate kinase isoenz 96.9 0.0006 2E-08 56.8 3.5 24 3-26 17-40 (233)
400 1z0f_A RAB14, member RAS oncog 96.9 0.00061 2.1E-08 53.0 3.3 23 3-25 16-38 (179)
401 2hf9_A Probable hydrogenase ni 96.9 0.00071 2.4E-08 55.4 3.8 36 3-39 39-74 (226)
402 3bc1_A RAS-related protein RAB 96.8 0.00062 2.1E-08 53.7 3.3 23 3-25 12-34 (195)
403 2oil_A CATX-8, RAS-related pro 96.8 0.00066 2.3E-08 54.0 3.5 23 3-25 26-48 (193)
404 1r8s_A ADP-ribosylation factor 96.8 0.00061 2.1E-08 52.4 3.1 21 4-24 2-22 (164)
405 3cf0_A Transitional endoplasmi 96.8 0.00058 2E-08 59.2 3.3 25 3-27 50-74 (301)
406 3t1o_A Gliding protein MGLA; G 96.8 0.00079 2.7E-08 53.3 3.8 25 3-27 15-39 (198)
407 4b4t_K 26S protease regulatory 96.8 0.0027 9.4E-08 58.1 7.8 25 3-27 207-231 (428)
408 4b4t_M 26S protease regulatory 96.8 0.0022 7.6E-08 58.8 7.2 26 2-27 215-240 (434)
409 2g6b_A RAS-related protein RAB 96.8 0.00076 2.6E-08 52.7 3.5 23 3-25 11-33 (180)
410 2bme_A RAB4A, RAS-related prot 96.8 0.00073 2.5E-08 53.2 3.3 23 3-25 11-33 (186)
411 1m7b_A RND3/RHOE small GTP-bin 96.8 0.00073 2.5E-08 53.5 3.3 23 3-25 8-30 (184)
412 3hu3_A Transitional endoplasmi 96.8 0.0034 1.2E-07 58.4 8.3 24 3-26 239-262 (489)
413 1ksh_A ARF-like protein 2; sma 96.8 0.00077 2.6E-08 53.2 3.4 23 3-25 19-41 (186)
414 2zts_A Putative uncharacterize 96.8 0.0013 4.5E-08 54.4 4.9 36 3-38 31-67 (251)
415 3kkq_A RAS-related protein M-R 96.8 0.00085 2.9E-08 52.7 3.5 23 3-25 19-41 (183)
416 3pfi_A Holliday junction ATP-d 96.8 0.0061 2.1E-07 53.1 9.4 23 4-26 57-79 (338)
417 2gf0_A GTP-binding protein DI- 96.8 0.00091 3.1E-08 53.2 3.7 22 3-24 9-30 (199)
418 1jbk_A CLPB protein; beta barr 96.8 0.00083 2.9E-08 52.6 3.4 24 4-27 45-68 (195)
419 2efe_B Small GTP-binding prote 96.8 0.0009 3.1E-08 52.3 3.6 23 3-25 13-35 (181)
420 1vg8_A RAS-related protein RAB 96.8 0.00087 3E-08 53.8 3.6 23 3-25 9-31 (207)
421 2gf9_A RAS-related protein RAB 96.8 0.00081 2.8E-08 53.4 3.3 23 3-25 23-45 (189)
422 2xtp_A GTPase IMAP family memb 96.7 0.0009 3.1E-08 56.3 3.7 23 3-25 23-45 (260)
423 1zj6_A ADP-ribosylation factor 96.7 0.00097 3.3E-08 52.8 3.7 22 3-24 17-38 (187)
424 3tkl_A RAS-related protein RAB 96.7 0.00087 3E-08 53.2 3.3 23 3-25 17-39 (196)
425 1mh1_A RAC1; GTP-binding, GTPa 96.7 0.00095 3.3E-08 52.3 3.5 23 3-25 6-28 (186)
426 2vhj_A Ntpase P4, P4; non- hyd 96.7 0.0031 1.1E-07 55.7 7.1 22 4-25 125-146 (331)
427 2fg5_A RAB-22B, RAS-related pr 96.7 0.00098 3.4E-08 53.2 3.5 23 3-25 24-46 (192)
428 3dz8_A RAS-related protein RAB 96.7 0.001 3.5E-08 53.0 3.6 23 3-25 24-46 (191)
429 2q6t_A DNAB replication FORK h 96.7 0.045 1.5E-06 49.9 15.1 34 4-37 202-236 (444)
430 3lxw_A GTPase IMAP family memb 96.7 0.00095 3.3E-08 56.3 3.6 23 3-25 22-44 (247)
431 2dby_A GTP-binding protein; GD 96.7 0.00072 2.5E-08 60.8 2.9 23 3-25 2-24 (368)
432 3t5d_A Septin-7; GTP-binding p 96.7 0.00079 2.7E-08 57.5 3.0 23 3-25 9-31 (274)
433 4ad8_A DNA repair protein RECN 96.7 0.00027 9.3E-09 66.1 0.0 22 4-25 62-83 (517)
434 1zbd_A Rabphilin-3A; G protein 96.7 0.00098 3.4E-08 53.5 3.4 23 3-25 9-31 (203)
435 3cbq_A GTP-binding protein REM 96.7 0.00068 2.3E-08 54.6 2.4 23 3-25 24-46 (195)
436 3a1s_A Iron(II) transport prot 96.7 0.00096 3.3E-08 56.8 3.4 23 3-25 6-28 (258)
437 2h17_A ADP-ribosylation factor 96.7 0.00094 3.2E-08 52.7 3.2 23 3-25 22-44 (181)
438 3foz_A TRNA delta(2)-isopenten 96.7 0.0011 3.7E-08 58.3 3.8 25 2-26 10-34 (316)
439 3t5g_A GTP-binding protein RHE 96.7 0.001 3.4E-08 52.2 3.3 22 3-24 7-28 (181)
440 3oes_A GTPase rhebl1; small GT 96.7 0.0011 3.7E-08 53.3 3.5 23 3-25 25-47 (201)
441 2h57_A ADP-ribosylation factor 96.7 0.00079 2.7E-08 53.5 2.6 23 3-25 22-44 (190)
442 1njg_A DNA polymerase III subu 96.7 0.001 3.5E-08 54.0 3.4 25 4-28 47-71 (250)
443 1z06_A RAS-related protein RAB 96.7 0.0011 3.9E-08 52.5 3.6 23 3-25 21-43 (189)
444 2ga8_A Hypothetical 39.9 kDa p 96.7 0.001 3.5E-08 59.5 3.6 25 3-27 25-49 (359)
445 3bwd_D RAC-like GTP-binding pr 96.7 0.0011 3.8E-08 51.8 3.5 23 3-25 9-31 (182)
446 1x3s_A RAS-related protein RAB 96.6 0.0011 3.6E-08 52.6 3.3 23 3-25 16-38 (195)
447 2p5s_A RAS and EF-hand domain 96.6 0.0012 4.1E-08 53.0 3.6 23 3-25 29-51 (199)
448 2a5j_A RAS-related protein RAB 96.6 0.0012 4E-08 52.7 3.5 23 3-25 22-44 (191)
449 1zd9_A ADP-ribosylation factor 96.6 0.0011 3.7E-08 52.7 3.3 23 3-25 23-45 (188)
450 2atv_A RERG, RAS-like estrogen 96.6 0.0013 4.3E-08 52.6 3.7 23 3-25 29-51 (196)
451 4b4t_H 26S protease regulatory 96.6 0.0036 1.2E-07 57.8 7.2 25 3-27 244-268 (467)
452 4edh_A DTMP kinase, thymidylat 96.6 0.0012 3.9E-08 54.8 3.5 33 3-35 7-39 (213)
453 2qu8_A Putative nucleolar GTP- 96.6 0.0011 3.8E-08 54.6 3.4 22 3-24 30-51 (228)
454 3reg_A RHO-like small GTPase; 96.6 0.0011 3.9E-08 52.7 3.3 23 3-25 24-46 (194)
455 2bcg_Y Protein YP2, GTP-bindin 96.6 0.0012 4.1E-08 53.1 3.5 23 3-25 9-31 (206)
456 2cjw_A GTP-binding protein GEM 96.6 0.0012 4.2E-08 53.0 3.5 23 3-25 7-29 (192)
457 2ew1_A RAS-related protein RAB 96.6 0.0012 4.1E-08 53.6 3.5 23 3-25 27-49 (201)
458 3cph_A RAS-related protein SEC 96.6 0.0013 4.4E-08 53.0 3.6 23 3-25 21-43 (213)
459 2o52_A RAS-related protein RAB 96.6 0.0012 4.3E-08 53.1 3.4 23 3-25 26-48 (200)
460 4b4t_I 26S protease regulatory 96.6 0.0039 1.3E-07 57.1 7.0 25 3-27 217-241 (437)
461 1gwn_A RHO-related GTP-binding 96.6 0.0012 4.2E-08 53.6 3.3 23 3-25 29-51 (205)
462 2fv8_A H6, RHO-related GTP-bin 96.6 0.0013 4.3E-08 53.3 3.4 23 3-25 26-48 (207)
463 1q57_A DNA primase/helicase; d 96.6 0.093 3.2E-06 48.5 16.5 35 3-37 243-278 (503)
464 2p65_A Hypothetical protein PF 96.6 0.00096 3.3E-08 52.3 2.6 25 4-28 45-69 (187)
465 2iwr_A Centaurin gamma 1; ANK 96.6 0.0011 3.6E-08 52.0 2.7 23 3-25 8-30 (178)
466 1wf3_A GTP-binding protein; GT 96.6 0.0013 4.3E-08 57.4 3.4 23 3-25 8-30 (301)
467 2fh5_B SR-beta, signal recogni 96.5 0.0013 4.6E-08 53.2 3.3 25 2-26 7-31 (214)
468 2il1_A RAB12; G-protein, GDP, 96.5 0.0011 3.7E-08 53.0 2.8 22 3-24 27-48 (192)
469 1g3q_A MIND ATPase, cell divis 96.5 0.0038 1.3E-07 51.4 6.2 42 1-42 1-43 (237)
470 3exa_A TRNA delta(2)-isopenten 96.5 0.0017 5.9E-08 57.1 4.2 25 2-26 3-27 (322)
471 2bjv_A PSP operon transcriptio 96.5 0.0023 8E-08 53.9 4.9 31 4-34 31-61 (265)
472 2b6h_A ADP-ribosylation factor 96.5 0.0013 4.3E-08 52.8 3.1 22 3-24 30-51 (192)
473 3c5c_A RAS-like protein 12; GD 96.5 0.0016 5.3E-08 51.9 3.6 23 3-25 22-44 (187)
474 2q3h_A RAS homolog gene family 96.5 0.0016 5.3E-08 52.2 3.6 23 3-25 21-43 (201)
475 3zvl_A Bifunctional polynucleo 96.5 0.0012 4.2E-08 60.0 3.3 25 2-26 258-282 (416)
476 4bas_A ADP-ribosylation factor 96.5 0.0012 4.2E-08 52.4 2.9 23 3-25 18-40 (199)
477 4hlc_A DTMP kinase, thymidylat 96.5 0.0017 5.9E-08 53.4 3.8 34 1-35 1-34 (205)
478 3cmw_A Protein RECA, recombina 96.5 0.0049 1.7E-07 65.1 7.9 35 4-38 734-768 (1706)
479 2gco_A H9, RHO-related GTP-bin 96.5 0.0015 5.2E-08 52.5 3.3 23 3-25 26-48 (201)
480 2j1l_A RHO-related GTP-binding 96.5 0.0015 5.1E-08 53.2 3.3 22 3-24 35-56 (214)
481 3llu_A RAS-related GTP-binding 96.5 0.0018 6.1E-08 51.9 3.7 25 2-26 20-44 (196)
482 3te6_A Regulatory protein SIR3 96.5 0.0093 3.2E-07 52.4 8.6 25 3-27 46-70 (318)
483 2f7s_A C25KG, RAS-related prot 96.5 0.0017 5.8E-08 52.7 3.5 24 3-26 26-49 (217)
484 2fu5_C RAS-related protein RAB 96.5 0.001 3.4E-08 52.3 2.0 22 3-24 9-30 (183)
485 4i1u_A Dephospho-COA kinase; s 96.5 0.0018 6.3E-08 53.6 3.6 24 2-25 9-32 (210)
486 2ocp_A DGK, deoxyguanosine kin 96.4 0.0016 5.5E-08 54.3 3.3 25 3-27 3-27 (241)
487 2atx_A Small GTP binding prote 96.4 0.0019 6.5E-08 51.3 3.5 23 3-25 19-41 (194)
488 1w5s_A Origin recognition comp 96.4 0.0027 9.3E-08 56.5 4.8 24 4-27 52-77 (412)
489 1p5z_B DCK, deoxycytidine kina 96.4 0.0011 3.7E-08 56.2 2.0 25 3-27 25-49 (263)
490 3cnl_A YLQF, putative uncharac 96.4 0.002 7E-08 55.0 3.7 25 3-27 100-124 (262)
491 3gmt_A Adenylate kinase; ssgci 96.4 0.0019 6.4E-08 54.4 3.4 24 3-26 9-32 (230)
492 3cmu_A Protein RECA, recombina 96.4 0.01 3.5E-07 63.5 9.6 117 3-137 384-517 (2050)
493 3u61_B DNA polymerase accessor 96.4 0.016 5.6E-07 50.1 9.5 24 3-26 49-72 (324)
494 3cf2_A TER ATPase, transitiona 96.4 0.0055 1.9E-07 60.4 7.1 25 3-27 239-263 (806)
495 3a8t_A Adenylate isopentenyltr 96.4 0.0025 8.5E-08 56.6 4.2 25 3-27 41-65 (339)
496 2hup_A RAS-related protein RAB 96.4 0.0022 7.4E-08 51.7 3.5 23 3-25 30-52 (201)
497 1h65_A Chloroplast outer envel 96.4 0.0021 7.1E-08 54.7 3.5 23 3-25 40-62 (270)
498 3q9l_A Septum site-determining 96.4 0.0039 1.3E-07 52.0 5.2 42 1-42 1-43 (260)
499 3lv8_A DTMP kinase, thymidylat 96.3 0.0016 5.5E-08 54.9 2.7 30 3-32 28-57 (236)
500 4djt_A GTP-binding nuclear pro 96.3 0.00085 2.9E-08 54.6 0.9 24 2-25 11-34 (218)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.95 E-value=1.1e-27 Score=216.51 Aligned_cols=146 Identities=13% Similarity=0.179 Sum_probs=117.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----------CCCCC-------CcccChhhhHh-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----------~~~~y-------~~~~~v~e~i~------- 58 (247)
-+++|+||||||||||+|+|+|+++|++|+|.++|.+... ..++| .+.+||++++.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~ 134 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN 134 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSC
T ss_pred CEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999999999999999999987632 22333 45678998874
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (247)
Q Consensus 59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (247)
++++++.+||.+...... ..+++|+ +++|||||+. +|++||+||||+ ||+.++..++ ++++++
T Consensus 135 ~~~~~~~~~v~~lL~~vgL~~~~~~~~--~~LSGGqkQRVaIArAL~~--~P~lLLlDEPTs~LD~~~~~~i~-~lL~~l 209 (366)
T 3tui_C 135 TPKDEVKRRVTELLSLVGLGDKHDSYP--SNLSGGQKQRVAIARALAS--NPKVLLCDQATSALDPATTRSIL-ELLKDI 209 (366)
T ss_dssp CCHHHHHHHHHHHHHHHTCGGGTTCCT--TTSCHHHHHHHHHHHHTTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCchHhcCCh--hhCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHH-HHHHHH
Confidence 577899999976544442 3567665 4999999999 999999999999 9999999999 999998
Q ss_pred Hh-CCCeEEEEEecccccccchhHHhhhhHHH
Q 025844 127 KS-RNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (247)
Q Consensus 127 ~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~~ 157 (247)
++ .|.++++| +|.+.....+|+.+++.
T Consensus 210 ~~~~g~Tii~v----THdl~~~~~~aDrv~vl 237 (366)
T 3tui_C 210 NRRLGLTILLI----THEMDVVKRICDCVAVI 237 (366)
T ss_dssp HHHSCCEEEEE----ESCHHHHHHHCSEEEEE
T ss_pred HHhCCCEEEEE----ecCHHHHHHhCCEEEEE
Confidence 65 58898776 47777777777754443
No 2
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.95 E-value=2.1e-27 Score=203.85 Aligned_cols=140 Identities=16% Similarity=0.214 Sum_probs=110.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC-----CCCCCC-------CcccChhhhHh-------------
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-------PVAMDIRELIS------------- 58 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~-----~~~~~y-------~~~~~v~e~i~------------- 58 (247)
+++|+||||||||||+|+|+|+++|++|+|.++|.++. ...++| .+.+|++|++.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~ 105 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDR 105 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHH
Confidence 68999999999999999999999999999999997652 123444 23467887763
Q ss_pred -HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeE
Q 025844 59 -LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNV 133 (247)
Q Consensus 59 -~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~i 133 (247)
++++++.+++.+..... ...+++|++ ++||++++. +|+++||||||+ ||+.++..++ ++++++++ .|.++
T Consensus 106 ~~~~~l~~~~l~~~~~~~--~~~LSgGqkqRv~lAral~~--~p~lllLDEPts~LD~~~~~~~~-~~l~~l~~~~g~tv 180 (240)
T 2onk_A 106 RVREMAEKLGIAHLLDRK--PARLSGGERQRVALARALVI--QPRLLLLDEPLSAVDLKTKGVLM-EELRFVQREFDVPI 180 (240)
T ss_dssp HHHHHHHTTTCTTTTTCC--GGGSCHHHHHHHHHHHHHTT--CCSSBEEESTTSSCCHHHHHHHH-HHHHHHHHHHTCCE
T ss_pred HHHHHHHHcCCHHHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEE
Confidence 46788899997654444 245777654 899999999 999999999999 9999999998 88888865 48888
Q ss_pred EEEEecccccccchhHHhh
Q 025844 134 CAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 134 i~v~l~d~~~~~d~~~~~s 152 (247)
+++ +|.+.+...+++
T Consensus 181 i~v----tHd~~~~~~~~d 195 (240)
T 2onk_A 181 LHV----THDLIEAAMLAD 195 (240)
T ss_dssp EEE----ESCHHHHHHHCS
T ss_pred EEE----eCCHHHHHHhCC
Confidence 766 466555555555
No 3
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.95 E-value=2.4e-27 Score=202.75 Aligned_cols=129 Identities=18% Similarity=0.189 Sum_probs=102.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------------------CCCCCCcccChhhhHh------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------------ENFDYPVAMDIRELIS------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------------------~~~~y~~~~~v~e~i~------ 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... |+....+.+|++|++.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~ 111 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFK 111 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhh
Confidence 4789999999999999999999999999999999976531 2222234568888763
Q ss_pred -------------HHHHHHHcCCCCCC-chhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 025844 59 -------------LEDVMEELGLGPNG-GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (247)
Q Consensus 59 -------------~~~~l~~~~L~~~~-~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (247)
+.++++.+++.+.. ... ...+++|+ +++||+|++. +|++||+||||+ ||+.++..++ +
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGq~QRv~iAral~~--~p~llllDEPts~LD~~~~~~i~-~ 186 (235)
T 3tif_A 112 YRGAMSGEERRKRALECLKMAELEERFANHK--PNQLSGGQQQRVAIARALAN--NPPIILADQPTWALDSKTGEKIM-Q 186 (235)
T ss_dssp SSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC--GGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-H
T ss_pred hccCCCHHHHHHHHHHHHHHCCCChhhhhCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-H
Confidence 45678888886532 222 24567665 4999999999 999999999999 9999999999 9
Q ss_pred HHHHHHhC-CCeEEEE
Q 025844 122 FVDHLKSR-NFNVCAV 136 (247)
Q Consensus 122 ll~~l~~~-~~~ii~v 136 (247)
++++++++ |.++++|
T Consensus 187 ~l~~l~~~~g~tvi~v 202 (235)
T 3tif_A 187 LLKKLNEEDGKTVVVV 202 (235)
T ss_dssp HHHHHHHHHCCEEEEE
T ss_pred HHHHHHHHcCCEEEEE
Confidence 99998654 8888766
No 4
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.95 E-value=4.6e-27 Score=204.29 Aligned_cols=141 Identities=19% Similarity=0.243 Sum_probs=110.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC--C-------CCCCC-------CcccChhhhHh--------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--A-------ENFDY-------PVAMDIRELIS-------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~--~-------~~~~y-------~~~~~v~e~i~-------- 58 (247)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++. . +.++| ++.++++|++.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~ 130 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRK 130 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSC
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcC
Confidence 378999999999999999999999999999999997652 0 11222 34567777763
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (247)
Q Consensus 59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (247)
++++++.+++.+..... ...+++|++ ++||++++. +|+++||||||+ ||+.++..+. ++++++
T Consensus 131 ~~~~~~~~~~~~~l~~~~L~~~~~~~--~~~LSgGqkQRv~lAraL~~--~p~lllLDEPts~LD~~~~~~~~-~~l~~l 205 (263)
T 2olj_A 131 WPREKAEAKAMELLDKVGLKDKAHAY--PDSLSGGQAQRVAIARALAM--EPKIMLFDEPTSALDPEMVGEVL-SVMKQL 205 (263)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGTTSC--GGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCchHhcCC--hhhCCHHHHHHHHHHHHHHC--CCCEEEEeCCcccCCHHHHHHHH-HHHHHH
Confidence 35678889987654433 245776654 899999999 999999999999 9999999998 899998
Q ss_pred HhCCCeEEEEEecccccccchhHHhh
Q 025844 127 KSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+++|.+++++ +|.+.....+++
T Consensus 206 ~~~g~tvi~v----tHd~~~~~~~~d 227 (263)
T 2olj_A 206 ANEGMTMVVV----THEMGFAREVGD 227 (263)
T ss_dssp HHTTCEEEEE----CSCHHHHHHHCS
T ss_pred HhCCCEEEEE----cCCHHHHHHhCC
Confidence 7668888666 566665555555
No 5
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.95 E-value=3.8e-27 Score=212.76 Aligned_cols=141 Identities=15% Similarity=0.171 Sum_probs=112.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC----C-----CCCCC-------CCcccChhhhHh--------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP----A-----AENFD-------YPVAMDIRELIS-------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~----~-----~~~~~-------y~~~~~v~e~i~-------- 58 (247)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++ . ...++ .++.+||+|++.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~ 110 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKG 110 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCC
Confidence 36899999999999999999999999999999999765 1 12233 345779999874
Q ss_pred --------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH-
Q 025844 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL- 126 (247)
Q Consensus 59 --------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l- 126 (247)
++++++.++|.+...+.. ..+++|+ +++|||||+. +|++|||||||+ ||+..+..+. +.+.++
T Consensus 111 ~~~~~~~~v~~~l~~~gL~~~~~r~~--~~LSGGq~QRValArAL~~--~P~lLLLDEPts~LD~~~r~~l~-~~l~~~~ 185 (359)
T 3fvq_A 111 RTAQERQRIEAMLELTGISELAGRYP--HELSGGQQQRAALARALAP--DPELILLDEPFSALDEQLRRQIR-EDMIAAL 185 (359)
T ss_dssp CSHHHHHHHHHHHHHHTCGGGTTSCG--GGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHHcCCchHhcCCh--hhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHH
Confidence 678999999987655543 4577665 4999999999 999999999999 9999999988 555554
Q ss_pred HhCCCeEEEEEecccccccchhHHhh
Q 025844 127 KSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++.|.++++| +|.+.+...+++
T Consensus 186 ~~~g~tvi~v----THd~~ea~~~aD 207 (359)
T 3fvq_A 186 RANGKSAVFV----SHDREEALQYAD 207 (359)
T ss_dssp HHTTCEEEEE----CCCHHHHHHHCS
T ss_pred HhCCCEEEEE----eCCHHHHHHHCC
Confidence 5568888766 577776666666
No 6
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.94 E-value=3.8e-27 Score=214.15 Aligned_cols=141 Identities=16% Similarity=0.144 Sum_probs=115.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------------CCCCCCcccChhhhHh------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------------~~~~y~~~~~v~e~i~------------ 58 (247)
-+++|+||||||||||+|+|+|+++|++|+|.++|.+... |+...++.+||+|++.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~ 109 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEV 109 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHH
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHH
Confidence 3689999999999999999999999999999999976532 3333456789999874
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-C
Q 025844 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N 130 (247)
Q Consensus 59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~ 130 (247)
++++++.+++.+...+.. ..+++|+ +++|||||+. +|++|||||||+ ||+..+..+. ++++++.++ |
T Consensus 110 ~~~~v~~~l~~~~L~~~~~r~p--~~LSGGqrQRVaiArAL~~--~P~lLLLDEPts~LD~~~~~~l~-~~l~~l~~~~g 184 (381)
T 3rlf_A 110 INQRVNQVAEVLQLAHLLDRKP--KALSGGQRQRVAIGRTLVA--EPSVFLLDEPLSNLDAALRVQMR-IEISRLHKRLG 184 (381)
T ss_dssp HHHHHHHHHHHTTCGGGTTCCG--GGSCHHHHHHHHHHHHHHH--CCSEEEEESTTTTSCHHHHHHHH-HHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCchhhcCCh--hHCCHHHHHHHHHHHHHHc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHHHhCC
Confidence 578899999987655443 4577665 4999999999 999999999999 9999999998 888888654 8
Q ss_pred CeEEEEEecccccccchhHHhh
Q 025844 131 FNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s 152 (247)
.++++| +|.+.+...+++
T Consensus 185 ~tii~v----THd~~ea~~~aD 202 (381)
T 3rlf_A 185 RTMIYV----THDQVEAMTLAD 202 (381)
T ss_dssp CEEEEE----CSCHHHHHHHCS
T ss_pred CEEEEE----ECCHHHHHHhCC
Confidence 888766 577776666666
No 7
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.94 E-value=1.5e-27 Score=202.58 Aligned_cols=129 Identities=19% Similarity=0.165 Sum_probs=104.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhHh------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------~~~~y-------~~~~~v~e~i~------ 58 (247)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++| .+.++++|++.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~ 110 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM 110 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc
Confidence 3689999999999999999999999999999999976521 12333 34567887763
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
++++++.+++.+...... ..+++|++ ++||++++. +|+++||||||+ ||+.++..+. +++++
T Consensus 111 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~~~-~~l~~ 185 (224)
T 2pcj_A 111 GKPKKEAKERGEYLLSELGLGDKLSRKP--YELSGGEQQRVAIARALAN--EPILLFADEPTGNLDSANTKRVM-DIFLK 185 (224)
T ss_dssp TCCHHHHHHHHHHHHHHTTCTTCTTCCG--GGSCHHHHHHHHHHHHTTT--CCSEEEEESTTTTCCHHHHHHHH-HHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhhCCh--hhCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHH
Confidence 456888999987654442 45777654 899999999 999999999999 9999999998 88999
Q ss_pred HHhCCCeEEEE
Q 025844 126 LKSRNFNVCAV 136 (247)
Q Consensus 126 l~~~~~~ii~v 136 (247)
++++|.+++++
T Consensus 186 l~~~g~tvi~v 196 (224)
T 2pcj_A 186 INEGGTSIVMV 196 (224)
T ss_dssp HHHTTCEEEEE
T ss_pred HHHCCCEEEEE
Confidence 87668888766
No 8
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.94 E-value=4.9e-27 Score=205.35 Aligned_cols=141 Identities=13% Similarity=0.145 Sum_probs=111.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC---------CCCCC-C-------cccChhhhHh-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-P-------VAMDIRELIS------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~---------~~~~y-~-------~~~~v~e~i~------- 58 (247)
-+++|+||||||||||+|+|+|+++|++|+|.++|.+... +.++| + ...++++++.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~ 114 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMK 114 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcC
Confidence 3689999999999999999999999999999999987621 12333 1 1357888764
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (247)
Q Consensus 59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (247)
++++++.+++....... ...+++|++ ++||++++. +|++|||||||+ ||+.++..++ ++++++
T Consensus 115 ~~~~~~~~~~~~~l~~~~L~~~~~~~--~~~LSgGqkQRv~iAraL~~--~P~lLlLDEPts~LD~~~~~~i~-~~l~~l 189 (275)
T 3gfo_A 115 LPEDEIRKRVDNALKRTGIEHLKDKP--THCLSFGQKKRVAIAGVLVM--EPKVLILDEPTAGLDPMGVSEIM-KLLVEM 189 (275)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGTTSB--GGGSCHHHHHHHHHHHHHTT--CCSEEEEECTTTTCCHHHHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHH
Confidence 56789999997654444 245777654 999999999 999999999999 9999999999 999998
Q ss_pred H-hCCCeEEEEEecccccccchhHHhh
Q 025844 127 K-SRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 127 ~-~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+ ++|.+++++ +|.+.....+++
T Consensus 190 ~~~~g~tvi~v----tHdl~~~~~~~d 212 (275)
T 3gfo_A 190 QKELGITIIIA----THDIDIVPLYCD 212 (275)
T ss_dssp HHHHCCEEEEE----ESCCSSGGGGCS
T ss_pred HhhCCCEEEEE----ecCHHHHHHhCC
Confidence 6 458888766 466666666666
No 9
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.94 E-value=3.9e-27 Score=204.61 Aligned_cols=141 Identities=18% Similarity=0.199 Sum_probs=109.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------------------CCCCC-------CcccChhh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------------ENFDY-------PVAMDIRE 55 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------------------~~~~y-------~~~~~v~e 55 (247)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++| ++.+|+++
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e 112 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLE 112 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHH
Confidence 3789999999999999999999999999999999976530 11222 34567877
Q ss_pred hHh-----------------HHHHHHHcCCCCC-CchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHh
Q 025844 56 LIS-----------------LEDVMEELGLGPN-GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFT 114 (247)
Q Consensus 56 ~i~-----------------~~~~l~~~~L~~~-~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~ 114 (247)
++. ++++++.+++.+. .... ...+++|+ +++||++++. +|++|||||||+ ||+.+
T Consensus 113 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~--~~~LSgGq~qRv~lAraL~~--~p~lllLDEPts~LD~~~ 188 (262)
T 1b0u_A 113 NVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKY--PVHLSGGQQQRVSIARALAM--EPDVLLFDEPTSALDPEL 188 (262)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSC--GGGSCHHHHHHHHHHHHHHT--CCSEEEEESTTTTSCHHH
T ss_pred HHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHH
Confidence 663 3567888888654 3333 24577765 4999999999 999999999999 99999
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 115 HVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 115 ~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
+..+. +++++++++|.+++++ +|.+.....+++
T Consensus 189 ~~~~~-~~l~~l~~~g~tvi~v----tHd~~~~~~~~d 221 (262)
T 1b0u_A 189 VGEVL-RIMQQLAEEGKTMVVV----THEMGFARHVSS 221 (262)
T ss_dssp HHHHH-HHHHHHHHTTCCEEEE----CSCHHHHHHHCS
T ss_pred HHHHH-HHHHHHHhCCCEEEEE----eCCHHHHHHhCC
Confidence 99999 8999987668888766 566665555555
No 10
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.94 E-value=4.2e-27 Score=203.76 Aligned_cols=141 Identities=16% Similarity=0.188 Sum_probs=109.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------CCCCC-------CcccChhhhHh-----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------~~~~y-------~~~~~v~e~i~----------- 58 (247)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++| .+.+|+++++.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~ 121 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSS 121 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChH
Confidence 3789999999999999999999999999999999976531 12333 34568888764
Q ss_pred -----HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 025844 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (247)
Q Consensus 59 -----~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (247)
++++++.+++.+..... ...+++|++ ++||++++. +|+++||||||+ ||+.++..+. +++++++++|
T Consensus 122 ~~~~~~~~~l~~~gL~~~~~~~--~~~LSgGq~qRv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~l~~~g 196 (256)
T 1vpl_A 122 EIEEMVERATEIAGLGEKIKDR--VSTYSKGMVRKLLIARALMV--NPRLAILDEPTSGLDVLNAREVR-KILKQASQEG 196 (256)
T ss_dssp HHHHHHHHHHHHHCCGGGGGSB--GGGCCHHHHHHHHHHHHHTT--CCSEEEEESTTTTCCHHHHHHHH-HHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCchHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCccccCHHHHHHHH-HHHHHHHhCC
Confidence 35678889997654433 245676654 899999999 999999999999 9999999998 8899987678
Q ss_pred CeEEEEEecccccccchhHHhh
Q 025844 131 FNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s 152 (247)
.+++++ +|.+.....+++
T Consensus 197 ~tiiiv----tHd~~~~~~~~d 214 (256)
T 1vpl_A 197 LTILVS----SHNMLEVEFLCD 214 (256)
T ss_dssp CEEEEE----ECCHHHHTTTCS
T ss_pred CEEEEE----cCCHHHHHHHCC
Confidence 888766 355544444444
No 11
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.94 E-value=1e-26 Score=199.46 Aligned_cols=141 Identities=15% Similarity=0.123 Sum_probs=107.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-------CcccChhhhHh---------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~--------- 58 (247)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++| .+.+|++|++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~ 112 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDK 112 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCH
Confidence 3789999999999999999999999999999999976531 12333 33457777763
Q ss_pred ------HHHHHHHcC-CCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844 59 ------LEDVMEELG-LGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (247)
Q Consensus 59 ------~~~~l~~~~-L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (247)
++++++.++ +....... ...+++|+ +++||++++. +|+++||||||+ ||+.++..+. ++++++++
T Consensus 113 ~~~~~~~~~~l~~~~~l~~~~~~~--~~~LSgGq~qrv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~~~~ 187 (240)
T 1ji0_A 113 EGIKRDLEWIFSLFPRLKERLKQL--GGTLSGGEQQMLAIGRALMS--RPKLLMMDEPSLGLAPILVSEVF-EVIQKINQ 187 (240)
T ss_dssp SHHHHHHHHHHHHCHHHHTTTTSB--SSSSCHHHHHHHHHHHHHTT--CCSEEEEECTTTTCCHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHhhHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHH
Confidence 455677774 75543333 23466664 4899999999 999999999999 9999999998 88898876
Q ss_pred CCCeEEEEEecccccccchhHHhh
Q 025844 129 RNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 129 ~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
.|.+++++ +|...+...+++
T Consensus 188 ~g~tvi~v----tHd~~~~~~~~d 207 (240)
T 1ji0_A 188 EGTTILLV----EQNALGALKVAH 207 (240)
T ss_dssp TTCCEEEE----ESCHHHHHHHCS
T ss_pred CCCEEEEE----ecCHHHHHHhCC
Confidence 78888766 466555555555
No 12
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.94 E-value=1.4e-26 Score=209.32 Aligned_cols=141 Identities=17% Similarity=0.152 Sum_probs=112.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------------CCCCCCcccChhhhHh------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------------~~~~y~~~~~v~e~i~------------ 58 (247)
-+++|+||||||||||+|+|+|+++|++|+|.++|.+... |+..+++.+|+++++.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~ 109 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDE 109 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHH
T ss_pred CEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHH
Confidence 3689999999999999999999999999999999976521 2223345678888874
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 025844 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (247)
Q Consensus 59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (247)
++++++.++|.+...+.. ..+++|+ +++||++++. +|++||||||++ ||+..+..+. +.++++.+ .|
T Consensus 110 ~~~~v~~~l~~~~L~~~~~r~~--~~LSgGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g 184 (359)
T 2yyz_A 110 VEKRVVEIARKLLIDNLLDRKP--TQLSGGQQQRVALARALVK--QPKVLLFDEPLSNLDANLRMIMR-AEIKHLQQELG 184 (359)
T ss_dssp TTHHHHHHHHHTTCGGGTTSCG--GGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCchHhcCCh--hhCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 567899999987654443 4577765 4999999999 999999999999 9999999988 88888865 48
Q ss_pred CeEEEEEecccccccchhHHhh
Q 025844 131 FNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s 152 (247)
.++++| +|...+...+++
T Consensus 185 ~tvi~v----THd~~~~~~~ad 202 (359)
T 2yyz_A 185 ITSVYV----THDQAEAMTMAS 202 (359)
T ss_dssp CEEEEE----ESCHHHHHHHCS
T ss_pred CEEEEE----cCCHHHHHHhCC
Confidence 888766 466655555555
No 13
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.94 E-value=1.2e-26 Score=209.28 Aligned_cols=141 Identities=17% Similarity=0.177 Sum_probs=112.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC-----CCCCCC-------CcccChhhhHh------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-------PVAMDIRELIS------------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~-----~~~~~y-------~~~~~v~e~i~------------ 58 (247)
-+++|+||||||||||+|+|+|+++|++|+|.++|.+.. ...++| ++.+|++|++.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~ 121 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDE 121 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHH
Confidence 368999999999999999999999999999999997652 122333 45678888874
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 025844 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (247)
Q Consensus 59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (247)
++++++.+++.+...+.. ..+++|+ +++||+||+. +|++||||||++ ||+..+..+. ++++++.+ .|
T Consensus 122 ~~~~v~~~l~~~gL~~~~~r~~--~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g 196 (355)
T 1z47_A 122 MDARVRELLRFMRLESYANRFP--HELSGGQQQRVALARALAP--RPQVLLFDEPFAAIDTQIRRELR-TFVRQVHDEMG 196 (355)
T ss_dssp HHHHHHHHHHHTTCGGGTTSCG--GGSCHHHHHHHHHHHHHTT--CCSEEEEESTTCCSSHHHHHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChhHhcCCc--ccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 467888999976654443 4577765 4999999999 999999999999 9999999988 88888865 48
Q ss_pred CeEEEEEecccccccchhHHhh
Q 025844 131 FNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s 152 (247)
.++++| +|...+...+++
T Consensus 197 ~tvi~v----THd~~~a~~~ad 214 (355)
T 1z47_A 197 VTSVFV----THDQEEALEVAD 214 (355)
T ss_dssp CEEEEE----CSCHHHHHHHCS
T ss_pred CEEEEE----CCCHHHHHHhCC
Confidence 888766 566666666655
No 14
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.94 E-value=1.2e-26 Score=200.93 Aligned_cols=141 Identities=20% Similarity=0.173 Sum_probs=107.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------CCCCC-------CcccChhhhH----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELI---------- 57 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i---------- 57 (247)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++| .+.+|++|++
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~ 113 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGES 113 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccC
Confidence 4789999999999999999999999999999999976521 12222 2234554443
Q ss_pred -------------------hHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhH
Q 025844 58 -------------------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTH 115 (247)
Q Consensus 58 -------------------~~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~ 115 (247)
.++++++.+|+.+..... ...+++|++ ++||++++. +|++|||||||+ ||+.++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGqkQrv~iAraL~~--~p~lllLDEPts~LD~~~~ 189 (257)
T 1g6h_A 114 PLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK--AGELSGGQMKLVEIGRALMT--NPKMIVMDEPIAGVAPGLA 189 (257)
T ss_dssp HHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSB--GGGSCHHHHHHHHHHHHHHT--CCSEEEEESTTTTCCHHHH
T ss_pred cccccccccccCCHHHHHHHHHHHHHHcCCchhhCCC--chhCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHH
Confidence 145678888887554433 245676654 899999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhh
Q 025844 116 VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 116 ~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
..++ +++++++++|.+++++ +|.+.....+++
T Consensus 190 ~~l~-~~l~~l~~~g~tvi~v----tHd~~~~~~~~d 221 (257)
T 1g6h_A 190 HDIF-NHVLELKAKGITFLII----EHRLDIVLNYID 221 (257)
T ss_dssp HHHH-HHHHHHHHTTCEEEEE----CSCCSTTGGGCS
T ss_pred HHHH-HHHHHHHHCCCEEEEE----ecCHHHHHHhCC
Confidence 9999 8999987678888766 466665555555
No 15
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.94 E-value=1.8e-26 Score=208.82 Aligned_cols=142 Identities=16% Similarity=0.170 Sum_probs=112.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------------CCCCCCcccChhhhHh------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------------~~~~y~~~~~v~e~i~------------ 58 (247)
-+++|+||||||||||+|+|+|+++|++|+|.++|.+... |+...++.+|+++++.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~ 109 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREE 109 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHH
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHH
Confidence 3689999999999999999999999999999999976521 2222345678888874
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 025844 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (247)
Q Consensus 59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (247)
++++++.+++.+...+.. ..+++|+ +++||++++. +|++||||||++ ||+..+..+. +.++++.+ .|
T Consensus 110 ~~~~v~~~l~~~~L~~~~~r~~--~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g 184 (362)
T 2it1_A 110 IDKKVREVAKMLHIDKLLNRYP--WQLSGGQQQRVAIARALVK--EPEVLLLDEPLSNLDALLRLEVR-AELKRLQKELG 184 (362)
T ss_dssp HHHHHHHHHHHTTCTTCTTCCG--GGSCHHHHHHHHHHHHHTT--CCSEEEEESGGGGSCHHHHHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCchHhhCCh--hhCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHHHHhCC
Confidence 467889999987655543 4577765 4999999999 999999999999 9999999988 88888865 48
Q ss_pred CeEEEEEecccccccchhHHhhh
Q 025844 131 FNVCAVYLLDSQFITDVTKFISG 153 (247)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s~ 153 (247)
.++++| +|...+...+++.
T Consensus 185 ~tvi~v----THd~~~a~~~adr 203 (362)
T 2it1_A 185 ITTVYV----THDQAEALAMADR 203 (362)
T ss_dssp CEEEEE----ESCHHHHHHHCSE
T ss_pred CEEEEE----CCCHHHHHHhCCE
Confidence 888766 4666555555553
No 16
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.94 E-value=2.6e-26 Score=199.81 Aligned_cols=143 Identities=20% Similarity=0.293 Sum_probs=111.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------------CCCCCCcccChhhhHh----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELIS---------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------------~~~~y~~~~~v~e~i~---------- 58 (247)
-+++|+||||||||||+|+|+|+++|++|+|.++|.+... +...+.+.+++++++.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 117 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQ 117 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTT
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHH
Confidence 4789999999999999999999999999999999987632 1122234568888763
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcC----CCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNY----LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (247)
Q Consensus 59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~----~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (247)
++++++.+++........ ..+++|+ +++||++++.. .+|++||+||||+ ||+.++..++ +++++++
T Consensus 118 ~~~~~~~~l~~~~l~~~~~~~~--~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~-~~l~~l~ 194 (266)
T 4g1u_C 118 DRQALQQVMAQTDCLALAQRDY--RVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTL-RLLRQLT 194 (266)
T ss_dssp HHHHHHHHHHHTTCSTTTTSBG--GGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHcCChhHhcCCc--ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHH-HHHHHHH
Confidence 678899999987654443 4577765 48999999851 1799999999999 9999999999 9999987
Q ss_pred hC-CCeEEEEEecccccccchhHHhh
Q 025844 128 SR-NFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 128 ~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++ +.+++++ +|.+.....+++
T Consensus 195 ~~~~~tvi~v----tHdl~~~~~~~d 216 (266)
T 4g1u_C 195 RQEPLAVCCV----LHDLNLAALYAD 216 (266)
T ss_dssp HHSSEEEEEE----CSCHHHHHHHCS
T ss_pred HcCCCEEEEE----EcCHHHHHHhCC
Confidence 54 5677655 577776666666
No 17
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.94 E-value=2.2e-26 Score=207.31 Aligned_cols=141 Identities=15% Similarity=0.169 Sum_probs=113.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC------------CCCCCCcccChhhhHh------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~------------~~~~y~~~~~v~e~i~------------ 58 (247)
-+++|+||||||||||+|+|+|+++|++|+|.++|.+... |+...++.+|++|++.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~ 106 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPK 106 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHH
T ss_pred CEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHH
Confidence 3689999999999999999999999999999999976531 2233355678998874
Q ss_pred -HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeE
Q 025844 59 -LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNV 133 (247)
Q Consensus 59 -~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~i 133 (247)
++++++.++|.+...+.. ..+++|+ +++||++++. +|++||||||++ ||+..+..+. ++++++.+ .|.++
T Consensus 107 ~v~~~l~~~~L~~~~~~~~--~~LSgGq~QRvalAraL~~--~P~lLLLDEP~s~LD~~~~~~l~-~~l~~l~~~~g~ti 181 (348)
T 3d31_A 107 RVLDTARDLKIEHLLDRNP--LTLSGGEQQRVALARALVT--NPKILLLDEPLSALDPRTQENAR-EMLSVLHKKNKLTV 181 (348)
T ss_dssp HHHHHHHHTTCTTTTTSCG--GGSCHHHHHHHHHHHHTTS--CCSEEEEESSSTTSCHHHHHHHH-HHHHHHHHHTTCEE
T ss_pred HHHHHHHHcCCchHhcCCh--hhCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHHHHhcCCEE
Confidence 457889999987655543 4577765 4999999999 999999999999 9999999988 88888864 58888
Q ss_pred EEEEecccccccchhHHhh
Q 025844 134 CAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 134 i~v~l~d~~~~~d~~~~~s 152 (247)
++| +|...+...+++
T Consensus 182 i~v----THd~~~~~~~ad 196 (348)
T 3d31_A 182 LHI----THDQTEARIMAD 196 (348)
T ss_dssp EEE----ESCHHHHHHHCS
T ss_pred EEE----eCCHHHHHHhCC
Confidence 766 466655555555
No 18
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.94 E-value=1.3e-26 Score=195.65 Aligned_cols=140 Identities=16% Similarity=0.118 Sum_probs=107.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC--C-------CCCCCCcccChhhhHh--------------H
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--A-------ENFDYPVAMDIRELIS--------------L 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~--~-------~~~~y~~~~~v~e~i~--------------~ 59 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++. . ++..+.+.++++|++. +
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~ 115 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEI 115 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHH
Confidence 368999999999999999999999999999999997641 1 2222234567777763 3
Q ss_pred HHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 60 EDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 60 ~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
+++++.+++... ... ...+++|++ ++||++++. +|+++||||||+ ||+.++..+. +++++++++|.+++++
T Consensus 116 ~~~l~~~gl~~~-~~~--~~~LSgGqkqrv~laraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~~~~~g~tiiiv 189 (214)
T 1sgw_A 116 MDALESVEVLDL-KKK--LGELSQGTIRRVQLASTLLV--NAEIYVLDDPVVAIDEDSKHKVL-KSILEILKEKGIVIIS 189 (214)
T ss_dssp HHHHHHTTCCCT-TSB--GGGSCHHHHHHHHHHHHTTS--CCSEEEEESTTTTSCTTTHHHHH-HHHHHHHHHHSEEEEE
T ss_pred HHHHHHcCCCcC-CCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 567888999765 333 345676654 899999999 999999999999 9999999998 8888886557787666
Q ss_pred EecccccccchhHHhh
Q 025844 137 YLLDSQFITDVTKFIS 152 (247)
Q Consensus 137 ~l~d~~~~~d~~~~~s 152 (247)
+|.......+++
T Consensus 190 ----tHd~~~~~~~~d 201 (214)
T 1sgw_A 190 ----SREELSYCDVNE 201 (214)
T ss_dssp ----ESSCCTTSSEEE
T ss_pred ----eCCHHHHHHhCC
Confidence 344444444433
No 19
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.93 E-value=2.4e-26 Score=208.59 Aligned_cols=142 Identities=16% Similarity=0.122 Sum_probs=110.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----CCCC-------CCcccChhhhHh------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFD-------YPVAMDIRELIS------------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----~~~~-------y~~~~~v~e~i~------------ 58 (247)
-+++|+||||||||||+|+|+|+++|++|+|.++|.+... ..++ .++.+|+++++.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~ 117 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDE 117 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHH
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHH
Confidence 3689999999999999999999999999999999976521 2232 245678888874
Q ss_pred ----HHHHHHHcCCCCCCchhhhHHhhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-C
Q 025844 59 ----LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N 130 (247)
Q Consensus 59 ----~~~~l~~~~L~~~~~~~~~~~~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~ 130 (247)
++++++.++|.+...+.. ..+++| ++++||++|+. +|++||||||++ ||+..+..+. +.++++.++ |
T Consensus 118 ~~~~v~~~l~~~~L~~~~~r~~--~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g 192 (372)
T 1v43_A 118 IDKRVRWAAELLQIEELLNRYP--AQLSGGQRQRVAVARAIVV--EPDVLLMDEPLSNLDAKLRVAMR-AEIKKLQQKLK 192 (372)
T ss_dssp HHHHHHHHHHHTTCGGGTTSCT--TTCCSSCHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChhHhcCCh--hhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhCC
Confidence 567899999976554443 356665 45999999999 999999999999 9999999988 888888654 8
Q ss_pred CeEEEEEecccccccchhHHhhh
Q 025844 131 FNVCAVYLLDSQFITDVTKFISG 153 (247)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s~ 153 (247)
.++++| +|...+...+++.
T Consensus 193 ~tvi~v----THd~~~a~~~adr 211 (372)
T 1v43_A 193 VTTIYV----THDQVEAMTMGDR 211 (372)
T ss_dssp CEEEEE----ESCHHHHHHHCSE
T ss_pred CEEEEE----eCCHHHHHHhCCE
Confidence 888766 4666655555553
No 20
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.93 E-value=3.3e-26 Score=207.87 Aligned_cols=143 Identities=17% Similarity=0.135 Sum_probs=112.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC-----------CCCCC-------CCcccChhhhHh------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENFD-------YPVAMDIRELIS------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~-----------~~~~~-------y~~~~~v~e~i~------ 58 (247)
-+++|+||||||||||+|+|+|+++|++|+|.++|.+.. ...++ .++.+|+++++.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 109 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR 109 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999999999999999986531 12232 345678888874
Q ss_pred ----------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 59 ----------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
++++++.++|.+...+.. ..+++|+ +++||++|+. +|++||||||++ ||+..+..+. +++++
T Consensus 110 ~~~~~~~~~~v~~~l~~~~L~~~~~r~~--~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~ 184 (372)
T 1g29_1 110 KVPRQEIDQRVREVAELLGLTELLNRKP--RELSGGQRQRVALGRAIVR--KPQVFLMDEPLSNLDAKLRVRMR-AELKK 184 (372)
T ss_dssp TCCHHHHHHHHHHHHHHHTCGGGTTCCG--GGSCHHHHHHHHHHHHHHT--CCSEEEEECTTTTSCHHHHHHHH-HHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCchHhcCCc--ccCCHHHHHHHHHHHHHhc--CCCEEEECCCCccCCHHHHHHHH-HHHHH
Confidence 467888999977654443 4577765 4999999999 999999999999 9999999988 88888
Q ss_pred HHh-CCCeEEEEEecccccccchhHHhhhh
Q 025844 126 LKS-RNFNVCAVYLLDSQFITDVTKFISGC 154 (247)
Q Consensus 126 l~~-~~~~ii~v~l~d~~~~~d~~~~~s~~ 154 (247)
+.+ .|.++++| +|...+...+++.+
T Consensus 185 l~~~~g~tvi~v----THd~~~a~~~adri 210 (372)
T 1g29_1 185 LQRQLGVTTIYV----THDQVEAMTMGDRI 210 (372)
T ss_dssp HHHHHTCEEEEE----ESCHHHHHHHCSEE
T ss_pred HHHhcCCEEEEE----CCCHHHHHHhCCEE
Confidence 865 48888766 46666555665533
No 21
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.93 E-value=2.2e-26 Score=207.71 Aligned_cols=141 Identities=18% Similarity=0.144 Sum_probs=111.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC----------CCCCC-------CCcccChhhhHh-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----------AENFD-------YPVAMDIRELIS------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~----------~~~~~-------y~~~~~v~e~i~------- 58 (247)
-+++|+||||||||||+|+|+|+++|++|+|.++|.+.. ...++ .++.+|+++++.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~ 111 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK 111 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcC
Confidence 368999999999999999999999999999999986531 12222 345678888874
Q ss_pred ---------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (247)
Q Consensus 59 ---------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (247)
++++++.++|.+...+.. ..+++|+ +++||++|+. +|++||||||++ ||+..+..+. +.++++
T Consensus 112 ~~~~~~~~~v~~~l~~~~L~~~~~~~~--~~LSGGq~QRvalAraL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l 186 (353)
T 1oxx_K 112 MSKEEIRKRVEEVAKILDIHHVLNHFP--RELSGAQQQRVALARALVK--DPSLLLLDEPFSNLDARMRDSAR-ALVKEV 186 (353)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGTTSCG--GGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCGGGHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCchHhcCCh--hhCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHHHHH
Confidence 567899999987654443 4577765 4999999999 999999999999 9999999998 888888
Q ss_pred Hh-CCCeEEEEEecccccccchhHHhh
Q 025844 127 KS-RNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 127 ~~-~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
.+ .|.++++| +|...+...+++
T Consensus 187 ~~~~g~tvi~v----THd~~~~~~~ad 209 (353)
T 1oxx_K 187 QSRLGVTLLVV----SHDPADIFAIAD 209 (353)
T ss_dssp HHHHCCEEEEE----ESCHHHHHHHCS
T ss_pred HHhcCCEEEEE----eCCHHHHHHhCC
Confidence 65 48888766 466665555555
No 22
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.93 E-value=2.7e-26 Score=201.03 Aligned_cols=141 Identities=16% Similarity=0.293 Sum_probs=106.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC--C-------CCCCC-C--------cccChhhhHh------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--A-------ENFDY-P--------VAMDIRELIS------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~--~-------~~~~y-~--------~~~~v~e~i~------ 58 (247)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++. . +.++| + +.+|++|++.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~ 127 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKS 127 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhc
Confidence 368999999999999999999999999999999997764 1 23333 1 1237777652
Q ss_pred --------------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 025844 59 --------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (247)
Q Consensus 59 --------------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (247)
++++++.+++....... ...+++|++ ++||++++. +|++|||||||+ ||+.++..++ +
T Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgGqkqRv~lAraL~~--~p~lLlLDEPts~LD~~~~~~l~-~ 202 (279)
T 2ihy_A 128 IGVYQDIDDEIRNEAHQLLKLVGMSAKAQQY--IGYLSTGEKQRVMIARALMG--QPQVLILDEPAAGLDFIARESLL-S 202 (279)
T ss_dssp ------CCHHHHHHHHHHHHHTTCGGGTTSB--GGGSCHHHHHHHHHHHHHHT--CCSEEEEESTTTTCCHHHHHHHH-H
T ss_pred cccccCCcHHHHHHHHHHHHHcCChhHhcCC--hhhCCHHHHHHHHHHHHHhC--CCCEEEEeCCccccCHHHHHHHH-H
Confidence 45678888987654433 245776654 899999999 999999999999 9999999998 8
Q ss_pred HHHHHHhCCCeE--EEEEecccccccchhHHhh
Q 025844 122 FVDHLKSRNFNV--CAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 122 ll~~l~~~~~~i--i~v~l~d~~~~~d~~~~~s 152 (247)
++++++++|.++ +++ +|.+.+...+++
T Consensus 203 ~l~~l~~~g~tv~~iiv----tHd~~~~~~~~d 231 (279)
T 2ihy_A 203 ILDSLSDSYPTLAMIYV----THFIEEITANFS 231 (279)
T ss_dssp HHHHHHHHCTTCEEEEE----ESCGGGCCTTCC
T ss_pred HHHHHHHCCCEEEEEEE----ecCHHHHHHhCC
Confidence 888886557777 666 344444444444
No 23
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.93 E-value=6.6e-26 Score=195.50 Aligned_cols=140 Identities=17% Similarity=0.210 Sum_probs=109.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--------------CCCCCCcccChhhhHh----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELIS---------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--------------~~~~y~~~~~v~e~i~---------- 58 (247)
-+++|+||||||||||+|+|+|+++|+ |+|.++|.+... ++..+++.++++|++.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 105 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTE 105 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSSTTCHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhccCCcHH
Confidence 368999999999999999999999999 999999976421 2222234567888764
Q ss_pred -HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCC-------EEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844 59 -LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDD-------YLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (247)
Q Consensus 59 -~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~-------~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (247)
++++++.+++.+..... ...+++|++ ++||++++. +|+ ++||||||+ ||+.++..+. +++++++
T Consensus 106 ~~~~~l~~~~l~~~~~~~--~~~LSgGq~qrv~lAraL~~--~p~~~~~~~~lllLDEPts~LD~~~~~~l~-~~l~~l~ 180 (249)
T 2qi9_C 106 LLNDVAGALALDDKLGRS--TNQLSGGEWQRVRLAAVVLQ--ITPQANPAGQLLLLDEPMNSLDVAQQSALD-KILSALS 180 (249)
T ss_dssp HHHHHHHHTTCGGGTTSB--GGGCCHHHHHHHHHHHHHHH--HCTTTCTTCCEEEESSTTTTCCHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHcCChhHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCcCCCCCeEEEEECCcccCCHHHHHHHH-HHHHHHH
Confidence 56788999997654433 345777654 899999999 999 999999999 9999999998 8899987
Q ss_pred hCCCeEEEEEecccccccchhHHhh
Q 025844 128 SRNFNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~d~~~~~s 152 (247)
++|.+++++ +|.......+++
T Consensus 181 ~~g~tviiv----tHd~~~~~~~~d 201 (249)
T 2qi9_C 181 QQGLAIVMS----SHDLNHTLRHAH 201 (249)
T ss_dssp HTTCEEEEE----CSCHHHHHHHCS
T ss_pred hCCCEEEEE----eCCHHHHHHhCC
Confidence 668888666 466555555544
No 24
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.93 E-value=7.4e-26 Score=196.88 Aligned_cols=141 Identities=21% Similarity=0.190 Sum_probs=108.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC----CCCCCC--------CcccChhhhHh------------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----AENFDY--------PVAMDIRELIS------------ 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~----~~~~~y--------~~~~~v~e~i~------------ 58 (247)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++. .+.++| .+..++++++.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~ 113 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDP 113 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHH
Confidence 378999999999999999999999999999999997652 112222 22357777653
Q ss_pred ---HHHHHHHcCCC--CCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 025844 59 ---LEDVMEELGLG--PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (247)
Q Consensus 59 ---~~~~l~~~~L~--~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (247)
++++++.+|+. +..... ...+++|++ ++||++++. +|+++||||||+ ||+.++..+. +++++++++|
T Consensus 114 ~~~~~~~l~~~gl~~~~~~~~~--~~~LSgGq~qRv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~l~~~g 188 (266)
T 2yz2_A 114 VPLVKKAMEFVGLDFDSFKDRV--PFFLSGGEKRRVAIASVIVH--EPDILILDEPLVGLDREGKTDLL-RIVEKWKTLG 188 (266)
T ss_dssp HHHHHHHHHHTTCCHHHHTTCC--GGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTCCHHHHHHHH-HHHHHHHHTT
T ss_pred HHHHHHHHHHcCcCCcccccCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEcCccccCCHHHHHHHH-HHHHHHHHcC
Confidence 45788899997 543333 245676654 899999999 999999999999 9999999999 8899987668
Q ss_pred CeEEEEEecccccccchhHHhh
Q 025844 131 FNVCAVYLLDSQFITDVTKFIS 152 (247)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s 152 (247)
.+++++ +|.+.....+++
T Consensus 189 ~tii~v----tHd~~~~~~~~d 206 (266)
T 2yz2_A 189 KTVILI----SHDIETVINHVD 206 (266)
T ss_dssp CEEEEE----CSCCTTTGGGCS
T ss_pred CEEEEE----eCCHHHHHHhCC
Confidence 888766 465555555554
No 25
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.92 E-value=1.4e-25 Score=193.40 Aligned_cols=129 Identities=16% Similarity=0.202 Sum_probs=96.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC--CcCCCceEEEeccCCCC--------CCCCC-------CcccChhhhHh-------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~--l~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i~------- 58 (247)
-+++|+||||||||||+|+|+|+ ++|++|+|.++|.++.. ..+.| ++.+++++++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 109 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKL 109 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhc
Confidence 37899999999999999999998 88999999999976531 12333 23456666552
Q ss_pred ------------HHHHHHHcCCC-CCCchhhhHHh-hhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 025844 59 ------------LEDVMEELGLG-PNGGLIYCMEH-LEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (247)
Q Consensus 59 ------------~~~~l~~~~L~-~~~~~~~~~~~-l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (247)
+.++++.+++. ...... ... +++|+ +++||++++. +|+++||||||+ ||+.++..++ +
T Consensus 110 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--~~~~LSgGqkQrv~iAraL~~--~p~lllLDEPts~LD~~~~~~l~-~ 184 (250)
T 2d2e_A 110 GREVGVAEFWTKVKKALELLDWDESYLSRY--LNEGFSGGEKKRNEILQLLVL--EPTYAVLDETDSGLDIDALKVVA-R 184 (250)
T ss_dssp TSCCCHHHHHHHHHHHHHHHTCCGGGGGSB--TTCC----HHHHHHHHHHHHH--CCSEEEEECGGGTTCHHHHHHHH-H
T ss_pred cccCCHHHHHHHHHHHHHHcCCChhHhcCC--cccCCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcCCCHHHHHHHH-H
Confidence 34577778884 333222 133 66654 4899999999 999999999999 9999999998 8
Q ss_pred HHHHHHhCCCeEEEE
Q 025844 122 FVDHLKSRNFNVCAV 136 (247)
Q Consensus 122 ll~~l~~~~~~ii~v 136 (247)
++++++++|.+++++
T Consensus 185 ~l~~l~~~g~tvi~v 199 (250)
T 2d2e_A 185 GVNAMRGPNFGALVI 199 (250)
T ss_dssp HHHHHCSTTCEEEEE
T ss_pred HHHHHHhcCCEEEEE
Confidence 899986667888666
No 26
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.92 E-value=5.9e-25 Score=189.28 Aligned_cols=130 Identities=18% Similarity=0.110 Sum_probs=97.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh----------H
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------~ 59 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.++| ++ ..|+++++. +
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~ 115 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKV 115 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTCTTCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHhccCCCCCHHHH
Confidence 3689999999999999999999999999999999976532 11222 11 247888774 3
Q ss_pred HHHHHHcCCCCCCchh---------hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844 60 EDVMEELGLGPNGGLI---------YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (247)
Q Consensus 60 ~~~l~~~~L~~~~~~~---------~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (247)
.++++.+++....... .....+++|+ +++||++++. +|+++||||||+ ||+.++..++ +++++++
T Consensus 116 ~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~~~ 192 (247)
T 2ff7_A 116 IYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN--NPKILIFDEATSALDYESEHVIM-RNMHKIC 192 (247)
T ss_dssp HHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTT--CCSEEEECCCCSCCCHHHHHHHH-HHHHHHH
T ss_pred HHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHc
Confidence 4566666664211100 0013466654 4999999999 999999999999 9999999998 8888885
Q ss_pred hCCCeEEEE
Q 025844 128 SRNFNVCAV 136 (247)
Q Consensus 128 ~~~~~ii~v 136 (247)
+|.+++++
T Consensus 193 -~g~tviiv 200 (247)
T 2ff7_A 193 -KGRTVIII 200 (247)
T ss_dssp -TTSEEEEE
T ss_pred -CCCEEEEE
Confidence 58888766
No 27
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.92 E-value=5.6e-25 Score=190.09 Aligned_cols=141 Identities=17% Similarity=0.235 Sum_probs=102.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEecc-CCCCCCCCCCcccChhhhH--------------------hHHH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-DPAAENFDYPVAMDIRELI--------------------SLED 61 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~-d~~~~~~~y~~~~~v~e~i--------------------~~~~ 61 (247)
-+++|+||||||||||+++|+|+++|++|+|.+... ....+...+.+..+++|++ .+++
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~ 111 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQ 111 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHH
Confidence 368999999999999999999999999999974210 0001222222334554443 2567
Q ss_pred HHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCeEEEEE
Q 025844 62 VMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVY 137 (247)
Q Consensus 62 ~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v~ 137 (247)
+++.+++.+..... ...+++|++ ++||++++. +|+++||||||+ ||+.++..+. +++++++++ |.+++++
T Consensus 112 ~l~~~~l~~~~~~~--~~~LSgGq~qrv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~l~~~~g~tvi~v- 185 (253)
T 2nq2_C 112 ALDYLNLTHLAKRE--FTSLSGGQRQLILIARAIAS--ECKLILLDEPTSALDLANQDIVL-SLLIDLAQSQNMTVVFT- 185 (253)
T ss_dssp HHHHTTCGGGTTSB--GGGSCHHHHHHHHHHHHHHT--TCSEEEESSSSTTSCHHHHHHHH-HHHHHHHHTSCCEEEEE-
T ss_pred HHHHcCChHHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEE-
Confidence 88889987654433 345776654 999999999 999999999999 9999999999 888888765 8888666
Q ss_pred ecccccccchhHHhh
Q 025844 138 LLDSQFITDVTKFIS 152 (247)
Q Consensus 138 l~d~~~~~d~~~~~s 152 (247)
+|.+.....+++
T Consensus 186 ---tHd~~~~~~~~d 197 (253)
T 2nq2_C 186 ---THQPNQVVAIAN 197 (253)
T ss_dssp ---ESCHHHHHHHCS
T ss_pred ---ecCHHHHHHhCC
Confidence 466555555555
No 28
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.92 E-value=1.1e-24 Score=189.70 Aligned_cols=130 Identities=16% Similarity=0.132 Sum_probs=96.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC--CcCCCceEEEeccCCCC--------CCCCC-------CcccChhhhH--------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELI-------- 57 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~--l~~~~G~v~i~g~d~~~--------~~~~y-------~~~~~v~e~i-------- 57 (247)
-+++|+||||||||||+|+|+|+ ++|++|+|.++|.++.. ..++| .+.+++.+++
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~ 126 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVR 126 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhh
Confidence 37899999999999999999999 47899999999976421 11222 2233444433
Q ss_pred ---------------hHHHHHHHcCCCC-CCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 025844 58 ---------------SLEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (247)
Q Consensus 58 ---------------~~~~~l~~~~L~~-~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (247)
.++++++.+++.. ....... ..+++|+ +++||++++. +|++|||||||+ ||+.++..+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-~~LSgGq~QRv~iAraL~~--~p~lLlLDEPts~LD~~~~~~l 203 (267)
T 2zu0_C 127 SYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN-VGFSGGEKKRNDILQMAVL--EPELCILDESDSGLDIDALKVV 203 (267)
T ss_dssp HGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT-TTCCHHHHHHHHHHHHHHH--CCSEEEEESTTTTCCHHHHHHH
T ss_pred hhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc-cCCCHHHHHHHHHHHHHHh--CCCEEEEeCCCCCCCHHHHHHH
Confidence 1456788889863 3332211 1366664 4999999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 025844 119 LRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v 136 (247)
+ +++++++++|.+++++
T Consensus 204 ~-~~l~~l~~~g~tviiv 220 (267)
T 2zu0_C 204 A-DGVNSLRDGKRSFIIV 220 (267)
T ss_dssp H-HHHHTTCCSSCEEEEE
T ss_pred H-HHHHHHHhcCCEEEEE
Confidence 8 8888886567888666
No 29
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.91 E-value=1.2e-24 Score=186.86 Aligned_cols=130 Identities=18% Similarity=0.127 Sum_probs=99.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh-----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.++| ++ ..|+++++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~ 108 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDED 108 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHhhhccCCCCHHH
Confidence 4789999999999999999999999999999999976521 23444 21 237777763
Q ss_pred HHHHHHHcCCCCCCchhh---------hHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844 59 LEDVMEELGLGPNGGLIY---------CMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (247)
Q Consensus 59 ~~~~l~~~~L~~~~~~~~---------~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (247)
+.++++.+++........ ....+++|++ ++||++++. +|+++||||||+ ||+.++..++ ++++++
T Consensus 109 ~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~~ 185 (243)
T 1mv5_A 109 LWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR--NPKILMLDEATASLDSESESMVQ-KALDSL 185 (243)
T ss_dssp HHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH--CCSEEEEECCSCSSCSSSCCHHH-HHHHHH
T ss_pred HHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHHHh
Confidence 456777888765432210 1124666643 999999999 999999999999 9999999998 888888
Q ss_pred HhCCCeEEEE
Q 025844 127 KSRNFNVCAV 136 (247)
Q Consensus 127 ~~~~~~ii~v 136 (247)
+ +|.+++++
T Consensus 186 ~-~~~tvi~v 194 (243)
T 1mv5_A 186 M-KGRTTLVI 194 (243)
T ss_dssp H-TTSEEEEE
T ss_pred c-CCCEEEEE
Confidence 6 58888666
No 30
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.91 E-value=1.3e-24 Score=189.53 Aligned_cols=129 Identities=18% Similarity=0.186 Sum_probs=95.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHhH----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELISL---------- 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~~---------- 59 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.++| ++ ..|++|++..
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~ 125 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEE 125 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTCSSCCCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHhhhcccCChHHH
Confidence 3689999999999999999999999999999999976521 11222 11 2377777641
Q ss_pred ----------HHHHHHc--CCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 025844 60 ----------EDVMEEL--GLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (247)
Q Consensus 60 ----------~~~l~~~--~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~ 124 (247)
.++++.+ |+....... ...+++|+ +++||++++. +|++|||||||+ ||+.++..++ ++++
T Consensus 126 ~~~~~~~~~~~~~l~~l~~gl~~~~~~~--~~~LSgGq~QRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~l~ 200 (271)
T 2ixe_A 126 ITAVAMESGAHDFISGFPQGYDTEVGET--GNQLSGGQRQAVALARALIR--KPRLLILDNATSALDAGNQLRVQ-RLLY 200 (271)
T ss_dssp HHHHHHHHTCHHHHHHSTTGGGSBCCGG--GTTSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTCCHHHHHHHH-HHHH
T ss_pred HHHHHHHHhHHHHHHhhhcchhhhhcCC--cCCCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHH-HHHH
Confidence 2334444 444333322 23566665 4999999999 999999999999 9999999998 8888
Q ss_pred HHHh-CCCeEEEE
Q 025844 125 HLKS-RNFNVCAV 136 (247)
Q Consensus 125 ~l~~-~~~~ii~v 136 (247)
++.+ .|.+++++
T Consensus 201 ~~~~~~g~tviiv 213 (271)
T 2ixe_A 201 ESPEWASRTVLLI 213 (271)
T ss_dssp HCTTTTTSEEEEE
T ss_pred HHHhhcCCEEEEE
Confidence 8754 47888766
No 31
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.91 E-value=3.7e-24 Score=185.93 Aligned_cols=136 Identities=13% Similarity=0.220 Sum_probs=103.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC----CCCCC-C-Cc----ccChhhhHh------------HHH
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----AENFD-Y-PV----AMDIRELIS------------LED 61 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~----~~~~~-y-~~----~~~v~e~i~------------~~~ 61 (247)
+++|+||||||||||+|+|+|++ |++|+|.++|.++. .+.++ | ++ ..|++|++. +++
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~ 110 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLE 110 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcchHHHHHHH
Confidence 68999999999999999999999 99999999986542 23455 5 22 457888764 467
Q ss_pred HHHHcCCC-CCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025844 62 VMEELGLG-PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (247)
Q Consensus 62 ~l~~~~L~-~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (247)
+++.+++. ...... ...+++|++ ++||++++. +|+++||||||+ ||+.++..+. ++++++++ +++++
T Consensus 111 ~l~~~gl~~~~~~~~--~~~LSgGqkqRv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~L~~~~~---tviiv- 181 (263)
T 2pjz_A 111 MLKALKLGEEILRRK--LYKLSAGQSVLVRTSLALAS--QPEIVGLDEPFENVDAARRHVIS-RYIKEYGK---EGILV- 181 (263)
T ss_dssp HHHHTTCCGGGGGSB--GGGSCHHHHHHHHHHHHHHT--CCSEEEEECTTTTCCHHHHHHHH-HHHHHSCS---EEEEE-
T ss_pred HHHHcCCChhHhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEECCccccCHHHHHHHH-HHHHHhcC---cEEEE-
Confidence 88899997 543333 345776654 899999999 999999999999 9999999888 88777643 66555
Q ss_pred ecccccccchhHHhh
Q 025844 138 LLDSQFITDVTKFIS 152 (247)
Q Consensus 138 l~d~~~~~d~~~~~s 152 (247)
+|.......+++
T Consensus 182 ---tHd~~~~~~~~d 193 (263)
T 2pjz_A 182 ---THELDMLNLYKE 193 (263)
T ss_dssp ---ESCGGGGGGCTT
T ss_pred ---EcCHHHHHHhcC
Confidence 355444444444
No 32
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.89 E-value=2.5e-24 Score=190.75 Aligned_cols=130 Identities=16% Similarity=0.180 Sum_probs=96.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-C-----cccChhhhHh----------H
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS----------L 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~-----~~~~v~e~i~----------~ 59 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.++| + ...||++++. +
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~ 160 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEV 160 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHH
T ss_pred CEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHH
Confidence 3689999999999999999999999999999999987643 12333 1 1348888875 4
Q ss_pred HHHHHHcCCCCCCchh---------hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844 60 EDVMEELGLGPNGGLI---------YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (247)
Q Consensus 60 ~~~l~~~~L~~~~~~~---------~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (247)
.++++..++....... .....+++|+ +++||||++. +|++|||||||+ ||+.+...+. +.++++.
T Consensus 161 ~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~--~p~iLlLDEPts~LD~~~~~~i~-~~l~~l~ 237 (306)
T 3nh6_A 161 EAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK--APGIILLDEATSALDTSNERAIQ-ASLAKVC 237 (306)
T ss_dssp HHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH--CCSEEEEECCSSCCCHHHHHHHH-HHHHHHH
T ss_pred HHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHHHHHc
Confidence 4555555543210000 0002355554 4999999999 999999999999 9999999998 8888885
Q ss_pred hCCCeEEEE
Q 025844 128 SRNFNVCAV 136 (247)
Q Consensus 128 ~~~~~ii~v 136 (247)
+ +.++++|
T Consensus 238 ~-~~Tvi~i 245 (306)
T 3nh6_A 238 A-NRTTIVV 245 (306)
T ss_dssp T-TSEEEEE
T ss_pred C-CCEEEEE
Confidence 4 6777665
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.89 E-value=3.9e-23 Score=179.15 Aligned_cols=129 Identities=19% Similarity=0.137 Sum_probs=94.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh----------H
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------~ 59 (247)
-+++|+||||||||||+++|+|+++| +|+|.++|.++.. +.++| +| ..|+++++. +
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~ 125 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEV 125 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCTTCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccCCCCCHHHH
Confidence 37899999999999999999999987 8999999976521 22333 11 247888774 3
Q ss_pred HHHHHHcCCCCC------Cch---hhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844 60 EDVMEELGLGPN------GGL---IYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (247)
Q Consensus 60 ~~~l~~~~L~~~------~~~---~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (247)
.++++.+++... +.. ......+++|+ +++||++++. +|+++||||||+ ||+.++..++ +++++++
T Consensus 126 ~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~l~ 202 (260)
T 2ghi_A 126 IKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLK--DPKIVIFDEATSSLDSKTEYLFQ-KAVEDLR 202 (260)
T ss_dssp HHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHH--CCSEEEEECCCCTTCHHHHHHHH-HHHHHHT
T ss_pred HHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHhc
Confidence 445555565321 000 00012466654 4999999999 999999999999 9999999988 8888885
Q ss_pred hCCCeEEEE
Q 025844 128 SRNFNVCAV 136 (247)
Q Consensus 128 ~~~~~ii~v 136 (247)
+ +.+++++
T Consensus 203 ~-~~tviiv 210 (260)
T 2ghi_A 203 K-NRTLIII 210 (260)
T ss_dssp T-TSEEEEE
T ss_pred C-CCEEEEE
Confidence 4 7777666
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.89 E-value=2.4e-23 Score=177.27 Aligned_cols=129 Identities=19% Similarity=0.123 Sum_probs=89.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC-CCCCCCCCCcccChhhhHh---------HHHHHHHcCCCC--
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEELGLGP-- 70 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d-~~~~~~~y~~~~~v~e~i~---------~~~~l~~~~L~~-- 70 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.- ...+...+++. |++|++. ..++++.+++..
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~ 113 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDI 113 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSB-CHHHHHHTTSCCCHHHHHHHHHHTTCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCC-CHHHHhhccCCcChHHHHHHHHHhCcHHHH
Confidence 3689999999999999999999999999999998721 11122222333 8888875 234455554421
Q ss_pred ----CCchh---hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH-HHHHHhCCCeEEEE
Q 025844 71 ----NGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF-VDHLKSRNFNVCAV 136 (247)
Q Consensus 71 ----~~~~~---~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l-l~~l~~~~~~ii~v 136 (247)
.+... .....+++|+ +++||++++. +|+++||||||+ ||+.++..++ +. ++.+. .+.+++++
T Consensus 114 ~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~~~~-~~~tvi~v 186 (229)
T 2pze_A 114 SKFAEKDNIVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFGYLDVLTEKEIF-ESCVCKLM-ANKTRILV 186 (229)
T ss_dssp TTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHS--CCSEEEEESTTTTSCHHHHHHHH-HHCCCCCT-TTSEEEEE
T ss_pred HhCcccccccccCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEECcccCCCHHHHHHHH-HHHHHHhh-CCCEEEEE
Confidence 11000 0013466654 4899999999 999999999999 9999998887 54 44443 36777655
No 35
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.88 E-value=3.2e-23 Score=196.46 Aligned_cols=145 Identities=14% Similarity=0.163 Sum_probs=109.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC--CCCCCCCcccChhhhHh-------------HHHHHHHcC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDYPVAMDIRELIS-------------LEDVMEELG 67 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~--~~~~~y~~~~~v~e~i~-------------~~~~l~~~~ 67 (247)
-+++|+||||||||||+++|+|+++|++|+|.+.+...+ .+........++++++. ++++++.++
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~ 374 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLN 374 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcC
Confidence 378999999999999999999999999999998765432 12222223456666653 466777788
Q ss_pred CCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEEEeccccc
Q 025844 68 LGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQF 143 (247)
Q Consensus 68 L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~ 143 (247)
+.+..... ...+++|+ +++||++|+. +|++|||||||+ ||+.++..++ ++++++++ .|.++++| +|.
T Consensus 375 l~~~~~~~--~~~LSGGq~QRv~iAraL~~--~p~lLlLDEPT~gLD~~~~~~i~-~~l~~l~~~~g~tvi~v----sHd 445 (538)
T 3ozx_A 375 LHRLLESN--VNDLSGGELQKLYIAATLAK--EADLYVLDQPSSYLDVEERYIVA-KAIKRVTRERKAVTFII----DHD 445 (538)
T ss_dssp GGGCTTSB--GGGCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHH-HHHHHHHHHTTCEEEEE----CSC
T ss_pred CHHHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEE----eCC
Confidence 87654443 34577664 4999999999 999999999999 9999999999 89999864 57888766 466
Q ss_pred ccchhHHhhhhHH
Q 025844 144 ITDVTKFISGCMA 156 (247)
Q Consensus 144 ~~d~~~~~s~~l~ 156 (247)
+.....+++.++.
T Consensus 446 l~~~~~~aDri~v 458 (538)
T 3ozx_A 446 LSIHDYIADRIIV 458 (538)
T ss_dssp HHHHHHHCSEEEE
T ss_pred HHHHHHhCCEEEE
Confidence 6666666664433
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.88 E-value=2.1e-23 Score=178.55 Aligned_cols=129 Identities=21% Similarity=0.193 Sum_probs=90.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC-CCCCCCCCCcccChhhhHh---------HHHHHHHcCC----
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEELGL---- 68 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d-~~~~~~~y~~~~~v~e~i~---------~~~~l~~~~L---- 68 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.- ...+.. +.+..|+++++. .+++++.+++
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~ 110 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQA-WIQNDSLRENILFGCQLEEPYYRSVIQACALLPDL 110 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSC-CCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCC-cCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHH
Confidence 3789999999999999999999999999999998721 011222 223567888774 2334443332
Q ss_pred --CCCCch---hhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH---HHHhCCCeEEEE
Q 025844 69 --GPNGGL---IYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD---HLKSRNFNVCAV 136 (247)
Q Consensus 69 --~~~~~~---~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~---~l~~~~~~ii~v 136 (247)
.+.+.. ......+++|+ +++||++++. +|+++||||||+ ||+.++..++ +++. .++ +|.+++++
T Consensus 111 ~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~~~~~~-~~~tviiv 185 (237)
T 2cbz_A 111 EILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS--NADIYLFDDPLSAVDAHVGKHIF-ENVIGPKGML-KNKTRILV 185 (237)
T ss_dssp TTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHH--CCSEEEEESTTTTSCHHHHHHHH-HHTTSTTSTT-TTSEEEEE
T ss_pred HhccccccccccCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHH-HHHHHHHhhc-CCCEEEEE
Confidence 222100 01123466654 4999999999 999999999999 9999998888 6663 332 47777666
No 37
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.87 E-value=8.3e-23 Score=186.45 Aligned_cols=130 Identities=19% Similarity=0.176 Sum_probs=98.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh---------HH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE 60 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~---------~~ 60 (247)
-+++|+||||||||||+|+|+|+++ ++|+|.++|.+... ..++| +| ..|+++++. +.
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~ 126 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIW 126 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhhhccccCHHHHH
Confidence 3689999999999999999999998 89999999987632 12222 11 248888874 67
Q ss_pred HHHHHcCCCCCCchhhhH---------HhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 025844 61 DVMEELGLGPNGGLIYCM---------EHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (247)
Q Consensus 61 ~~l~~~~L~~~~~~~~~~---------~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (247)
++++.+++.......... ..+++|+ +++|||||+. +|++|||||||+ ||+..+..+. +.++++.
T Consensus 127 ~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~--~P~lLLLDEPts~LD~~~~~~l~-~~l~~~~- 202 (390)
T 3gd7_A 127 KVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS--KAKILLLDEPSAHLDPVTYQIIR-RTLKQAF- 202 (390)
T ss_dssp HHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT--TCCEEEEESHHHHSCHHHHHHHH-HHHHTTT-
T ss_pred HHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHh-
Confidence 788888886533222110 0166664 4999999999 999999999999 9999998887 7777653
Q ss_pred CCCeEEEEE
Q 025844 129 RNFNVCAVY 137 (247)
Q Consensus 129 ~~~~ii~v~ 137 (247)
.+.++++++
T Consensus 203 ~~~tvi~vt 211 (390)
T 3gd7_A 203 ADCTVILCE 211 (390)
T ss_dssp TTSCEEEEC
T ss_pred CCCEEEEEE
Confidence 467777663
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.87 E-value=4.1e-22 Score=190.49 Aligned_cols=130 Identities=18% Similarity=0.162 Sum_probs=96.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh-----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... +.++| +| +.|++|++.
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 449 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQ 449 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHH
Confidence 3689999999999999999999999999999999977532 23333 22 237888774
Q ss_pred HHHHHHHcCCCCCCchh---------hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844 59 LEDVMEELGLGPNGGLI---------YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (247)
Q Consensus 59 ~~~~l~~~~L~~~~~~~---------~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (247)
++++++..++.+..... .....+++|+ +++|||+++. +|+++||||||+ ||+.+...+. +.++++
T Consensus 450 ~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~--~p~illlDEpts~LD~~~~~~i~-~~l~~~ 526 (582)
T 3b5x_A 450 IEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLR--DAPVLILDEATSALDTESERAIQ-AALDEL 526 (582)
T ss_pred HHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHH
Confidence 34566666654211000 0012456654 4899999999 999999999999 9999999988 888887
Q ss_pred HhCCCeEEEE
Q 025844 127 KSRNFNVCAV 136 (247)
Q Consensus 127 ~~~~~~ii~v 136 (247)
.+ |.+++++
T Consensus 527 ~~-~~tvi~i 535 (582)
T 3b5x_A 527 QK-NKTVLVI 535 (582)
T ss_pred cC-CCEEEEE
Confidence 54 7787666
No 39
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.87 E-value=2.8e-22 Score=190.05 Aligned_cols=129 Identities=19% Similarity=0.169 Sum_probs=98.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceE---------EEeccCCC---------CCCCCC-------Ccc---cChh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTM---------HIVNLDPA---------AENFDY-------PVA---MDIR 54 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v---------~i~g~d~~---------~~~~~y-------~~~---~~v~ 54 (247)
-+++|+||||||||||+|+|+|+++|++|++ .+.|.+.. ...+.+ .+. .++.
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~ 127 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVI 127 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHH
Confidence 3689999999999999999999999999985 23443221 011111 111 1566
Q ss_pred hhHh-------HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 025844 55 ELIS-------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (247)
Q Consensus 55 e~i~-------~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~ 124 (247)
+++. ++++++.+|+....... ...+++|++ ++||++++. +|++|||||||+ ||+.++..++ ++++
T Consensus 128 e~~~~~~~~~~~~~~l~~lgl~~~~~~~--~~~LSgGekQRv~iAraL~~--~P~lLlLDEPTs~LD~~~~~~l~-~~L~ 202 (538)
T 1yqt_A 128 ELLKKADETGKLEEVVKALELENVLERE--IQHLSGGELQRVAIAAALLR--NATFYFFDEPSSYLDIRQRLNAA-RAIR 202 (538)
T ss_dssp HHHHHHCSSSCHHHHHHHTTCTTTTTSB--GGGCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHH-HHHH
T ss_pred HHHhhhhHHHHHHHHHHHcCCChhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHH
Confidence 6552 78899999997654443 345776654 999999999 999999999999 9999999998 9999
Q ss_pred HHHhCCCeEEEE
Q 025844 125 HLKSRNFNVCAV 136 (247)
Q Consensus 125 ~l~~~~~~ii~v 136 (247)
++++.|.++++|
T Consensus 203 ~l~~~g~tvi~v 214 (538)
T 1yqt_A 203 RLSEEGKSVLVV 214 (538)
T ss_dssp HHHHTTCEEEEE
T ss_pred HHHhcCCEEEEE
Confidence 987778888776
No 40
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.86 E-value=5.9e-22 Score=190.15 Aligned_cols=144 Identities=18% Similarity=0.195 Sum_probs=106.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC--CCCCCCCCcccChhhhHh------------HHHHHHHcCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AAENFDYPVAMDIRELIS------------LEDVMEELGL 68 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~--~~~~~~y~~~~~v~e~i~------------~~~~l~~~~L 68 (247)
-+++|+||||||||||+|+|+|+++|++|+|.+. ... ..|+....+..++.+++. ++++++.+++
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l 461 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-LTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGI 461 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-CCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-eEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC
Confidence 3789999999999999999999999999998752 111 012222223456666542 4568889999
Q ss_pred CCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH-hCCCeEEEEEecccccc
Q 025844 69 GPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFI 144 (247)
Q Consensus 69 ~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~~~ii~v~l~d~~~~ 144 (247)
.+..... ...+++|+ +++||++|+. +|++|||||||+ ||+.++..+. ++++++. +.|.++++| +|.+
T Consensus 462 ~~~~~~~--~~~LSGGe~QRv~iAraL~~--~p~lLlLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tvi~v----sHd~ 532 (607)
T 3bk7_A 462 IDLYDRN--VEDLSGGELQRVAIAATLLR--DADIYLLDEPSAYLDVEQRLAVS-RAIRHLMEKNEKTALVV----EHDV 532 (607)
T ss_dssp TTTTTSB--GGGCCHHHHHHHHHHHHHTS--CCSEEEEECTTTTCCHHHHHHHH-HHHHHHHHHTTCEEEEE----CSCH
T ss_pred chHhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEE----eCCH
Confidence 7655444 34577665 4999999999 999999999999 9999999999 8899886 468888766 4666
Q ss_pred cchhHHhhhhHH
Q 025844 145 TDVTKFISGCMA 156 (247)
Q Consensus 145 ~d~~~~~s~~l~ 156 (247)
.....+++.++.
T Consensus 533 ~~~~~~adrv~v 544 (607)
T 3bk7_A 533 LMIDYVSDRLIV 544 (607)
T ss_dssp HHHHHHCSEEEE
T ss_pred HHHHHhCCEEEE
Confidence 655666654433
No 41
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.86 E-value=2.5e-22 Score=192.69 Aligned_cols=129 Identities=20% Similarity=0.239 Sum_probs=98.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceE---------EEeccCCC---------C-------CCCCCCc---ccChh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTM---------HIVNLDPA---------A-------ENFDYPV---AMDIR 54 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v---------~i~g~d~~---------~-------~~~~y~~---~~~v~ 54 (247)
-+++|+||||||||||+|+|+|+++|++|++ .+.|.+.. . +.+...+ ..++.
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~ 197 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVR 197 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHH
T ss_pred CEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHH
Confidence 3689999999999999999999999999995 33443321 0 1111111 12666
Q ss_pred hhHh-------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 025844 55 ELIS-------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (247)
Q Consensus 55 e~i~-------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~ 124 (247)
+++. ++++++.+|+....... ...+++|+ +++||++|+. +|++|||||||+ ||+.++..++ ++++
T Consensus 198 e~l~~~~~~~~~~~~L~~lgL~~~~~~~--~~~LSGGekQRvaIAraL~~--~P~lLlLDEPTs~LD~~~~~~l~-~~L~ 272 (607)
T 3bk7_A 198 ELLKKVDEVGKFEEVVKELELENVLDRE--LHQLSGGELQRVAIAAALLR--KAHFYFFDEPSSYLDIRQRLKVA-RVIR 272 (607)
T ss_dssp HHHHHTCCSSCHHHHHHHTTCTTGGGSB--GGGCCHHHHHHHHHHHHHHS--CCSEEEEECTTTTCCHHHHHHHH-HHHH
T ss_pred HHhhhhHHHHHHHHHHHHcCCCchhCCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHH
Confidence 6653 78899999997654433 34577765 4999999999 999999999999 9999999998 9999
Q ss_pred HHHhCCCeEEEE
Q 025844 125 HLKSRNFNVCAV 136 (247)
Q Consensus 125 ~l~~~~~~ii~v 136 (247)
++++.|.++++|
T Consensus 273 ~l~~~g~tvIiv 284 (607)
T 3bk7_A 273 RLANEGKAVLVV 284 (607)
T ss_dssp HHHHTTCEEEEE
T ss_pred HHHhcCCEEEEE
Confidence 987778888776
No 42
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.86 E-value=4.9e-22 Score=189.98 Aligned_cols=130 Identities=16% Similarity=0.114 Sum_probs=96.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh-----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... +.++| +| +.|++|++.
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 449 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQ 449 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHH
Confidence 3689999999999999999999999999999999987632 12333 11 237888774
Q ss_pred HHHHHHHcCCCCCCchh---------hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844 59 LEDVMEELGLGPNGGLI---------YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (247)
Q Consensus 59 ~~~~l~~~~L~~~~~~~---------~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (247)
++++++..++.+..... .....+++|+ +++|||+++. +|+++||||||+ ||+.+...+. +.++++
T Consensus 450 ~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~--~p~illlDEpts~LD~~~~~~i~-~~l~~~ 526 (582)
T 3b60_A 450 IEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR--DSPILILDEATSALDTESERAIQ-AALDEL 526 (582)
T ss_dssp HHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH--CCSEEEEETTTSSCCHHHHHHHH-HHHHHH
T ss_pred HHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEECccccCCHHHHHHHH-HHHHHH
Confidence 34556656553210000 0012355554 4899999999 999999999999 9999999988 888888
Q ss_pred HhCCCeEEEE
Q 025844 127 KSRNFNVCAV 136 (247)
Q Consensus 127 ~~~~~~ii~v 136 (247)
.+ |.+++++
T Consensus 527 ~~-~~tvi~i 535 (582)
T 3b60_A 527 QK-NRTSLVI 535 (582)
T ss_dssp HT-TSEEEEE
T ss_pred hC-CCEEEEE
Confidence 54 7888766
No 43
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.86 E-value=3.2e-22 Score=189.57 Aligned_cols=141 Identities=16% Similarity=0.130 Sum_probs=103.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceE-----------EEeccCCCC----------------CCCCCCc---ccC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTM-----------HIVNLDPAA----------------ENFDYPV---AMD 52 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v-----------~i~g~d~~~----------------~~~~y~~---~~~ 52 (247)
-+++|+||||||||||+|+|+|+++|++|++ .+.|.+... +.+.+.+ ..+
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGT 105 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTCCSB
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhccCc
Confidence 4789999999999999999999999999998 444443210 1111111 124
Q ss_pred hhhhHh-------HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 025844 53 IRELIS-------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (247)
Q Consensus 53 v~e~i~-------~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (247)
+++.+. ++++++.+++....... ...+++|+ +++||++++. +|++|||||||+ ||+.++..+. ++
T Consensus 106 v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~--~~~LSgGe~Qrv~iA~aL~~--~p~illlDEPts~LD~~~~~~l~-~~ 180 (538)
T 3ozx_A 106 VNEILTKIDERGKKDEVKELLNMTNLWNKD--ANILSGGGLQRLLVAASLLR--EADVYIFDQPSSYLDVRERMNMA-KA 180 (538)
T ss_dssp HHHHHHHHCCSSCHHHHHHHTTCGGGTTSB--GGGCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHH-HH
T ss_pred HHHHhhcchhHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HH
Confidence 555442 78899999997654444 34566664 4999999999 999999999999 9999999998 99
Q ss_pred HHHHHhCCCeEEEEEecccccccchhHHhhh
Q 025844 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISG 153 (247)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~ 153 (247)
++++++ |.++++| +|.+.....+++.
T Consensus 181 l~~l~~-g~tii~v----sHdl~~~~~~~d~ 206 (538)
T 3ozx_A 181 IRELLK-NKYVIVV----DHDLIVLDYLTDL 206 (538)
T ss_dssp HHHHCT-TSEEEEE----CSCHHHHHHHCSE
T ss_pred HHHHhC-CCEEEEE----EeChHHHHhhCCE
Confidence 999965 8888766 3554444444443
No 44
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.86 E-value=4.2e-22 Score=190.90 Aligned_cols=130 Identities=22% Similarity=0.191 Sum_probs=96.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh-----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------- 58 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... +.++| +| +.|++|++.
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 450 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTA 450 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCH
Confidence 3689999999999999999999999999999999987632 12333 11 247888773
Q ss_pred --HHHHHHHcCCCC------CCchhh---hHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 025844 59 --LEDVMEELGLGP------NGGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (247)
Q Consensus 59 --~~~~l~~~~L~~------~~~~~~---~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~ 124 (247)
++++++.+++.+ .+-... ....+++|+ +++|||+++. +|+++||||||+ ||+.+.+.+. +.++
T Consensus 451 ~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~--~p~illlDEpts~LD~~~~~~i~-~~l~ 527 (595)
T 2yl4_A 451 EEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLK--NPKILLLDEATSALDAENEYLVQ-EALD 527 (595)
T ss_dssp HHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHH--CCSEEEEECCCSSCCHHHHHHHH-HHHH
T ss_pred HHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHc--CCCEEEEECcccCCCHHHHHHHH-HHHH
Confidence 455666666531 110000 002456654 4899999999 999999999999 9999999988 8888
Q ss_pred HHHhCCCeEEEE
Q 025844 125 HLKSRNFNVCAV 136 (247)
Q Consensus 125 ~l~~~~~~ii~v 136 (247)
++.+ +.+++++
T Consensus 528 ~~~~-~~tvi~i 538 (595)
T 2yl4_A 528 RLMD-GRTVLVI 538 (595)
T ss_dssp HHHT-TSEEEEE
T ss_pred HHhc-CCEEEEE
Confidence 8865 7777666
No 45
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.86 E-value=2.7e-22 Score=191.61 Aligned_cols=128 Identities=16% Similarity=0.168 Sum_probs=95.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-C-----cccChhhhHh----------H
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS----------L 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~-----~~~~v~e~i~----------~ 59 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.|... +.++| + .+.|++|++. +
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 447 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEV 447 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHH
T ss_pred CEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHH
Confidence 3689999999999999999999999999999999987632 12333 1 1338899885 3
Q ss_pred HHHHHHcCCCC------CC-----chhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 60 EDVMEELGLGP------NG-----GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 60 ~~~l~~~~L~~------~~-----~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
.+.++..++.+ .+ +.. -..+++|+ +++||||++. +|+++||||||+ ||+.+...+. +.+++
T Consensus 448 ~~~~~~~~~~~~~~~lp~g~~t~~~~~--g~~LSgGq~Qrv~lAral~~--~p~illlDEpts~LD~~~~~~i~-~~l~~ 522 (578)
T 4a82_A 448 VEAAKMANAHDFIMNLPQGYDTEVGER--GVKLSGGQKQRLSIARIFLN--NPPILILDEATSALDLESESIIQ-EALDV 522 (578)
T ss_dssp HHHHHHTTCHHHHHTSTTGGGCBCCGG--GTTSCHHHHHHHHHHHHHHH--CCSEEEEESTTTTCCHHHHHHHH-HHHHH
T ss_pred HHHHHHhCcHHHHHhCcchhhhhhccC--CCcCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHH
Confidence 44555554421 11 111 12456654 4899999999 999999999999 9999988887 88888
Q ss_pred HHhCCCeEEEE
Q 025844 126 LKSRNFNVCAV 136 (247)
Q Consensus 126 l~~~~~~ii~v 136 (247)
+. ++.+++++
T Consensus 523 ~~-~~~t~i~i 532 (578)
T 4a82_A 523 LS-KDRTTLIV 532 (578)
T ss_dssp HT-TTSEEEEE
T ss_pred Hc-CCCEEEEE
Confidence 74 46777665
No 46
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.85 E-value=5.9e-22 Score=187.86 Aligned_cols=144 Identities=18% Similarity=0.194 Sum_probs=104.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC--CCCCCCCCcccChhhhHh------------HHHHHHHcCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AAENFDYPVAMDIRELIS------------LEDVMEELGL 68 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~--~~~~~~y~~~~~v~e~i~------------~~~~l~~~~L 68 (247)
-+++|+||||||||||+++|+|+++|++|+|.+. ... -.++....+..++.+++. ++++++.+++
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l 391 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-LTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGI 391 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-CCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-ceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC
Confidence 3789999999999999999999999999998752 111 012221223456665542 3456667777
Q ss_pred CCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH-hCCCeEEEEEecccccc
Q 025844 69 GPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFI 144 (247)
Q Consensus 69 ~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~~~ii~v~l~d~~~~ 144 (247)
.+..... ...+++|. +++||++++. +|++|||||||+ ||+.++..+. ++++++. +.|.++++| +|.+
T Consensus 392 ~~~~~~~--~~~LSGGe~qrv~lAraL~~--~p~lLlLDEPt~~LD~~~~~~i~-~~l~~l~~~~g~tvi~v----sHd~ 462 (538)
T 1yqt_A 392 IDLYDRE--VNELSGGELQRVAIAATLLR--DADIYLLDEPSAYLDVEQRLAVS-RAIRHLMEKNEKTALVV----EHDV 462 (538)
T ss_dssp GGGTTSB--GGGCCHHHHHHHHHHHHHTS--CCSEEEEECTTTTCCHHHHHHHH-HHHHHHHHHHTCEEEEE----CSCH
T ss_pred hhhhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhCCCEEEEE----eCCH
Confidence 6543333 34577664 4999999999 999999999999 9999999999 8899886 358888766 4666
Q ss_pred cchhHHhhhhHH
Q 025844 145 TDVTKFISGCMA 156 (247)
Q Consensus 145 ~d~~~~~s~~l~ 156 (247)
.....+++.++.
T Consensus 463 ~~~~~~~drv~v 474 (538)
T 1yqt_A 463 LMIDYVSDRLMV 474 (538)
T ss_dssp HHHHHHCSEEEE
T ss_pred HHHHHhCCEEEE
Confidence 666666664433
No 47
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.85 E-value=4.1e-22 Score=191.13 Aligned_cols=135 Identities=14% Similarity=0.158 Sum_probs=97.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC------CcccChhhhHh----------H
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y------~~~~~v~e~i~----------~ 59 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.|... +.++| ..+.|++|++. +
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~ 461 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEI 461 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHH
T ss_pred CEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHH
Confidence 4689999999999999999999999999999999987642 11222 12348888885 3
Q ss_pred HHHHHHcCCCC------CCch---hhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844 60 EDVMEELGLGP------NGGL---IYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (247)
Q Consensus 60 ~~~l~~~~L~~------~~~~---~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (247)
.++++..++.. .+-. -..-..+++|+ +++||||++. +|+++||||||+ ||+.+...+. +.++++.
T Consensus 462 ~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~--~p~illlDEpts~LD~~~~~~i~-~~l~~~~ 538 (598)
T 3qf4_B 462 KEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLA--NPKILILDEATSNVDTKTEKSIQ-AAMWKLM 538 (598)
T ss_dssp HHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHT--CCSEEEECCCCTTCCHHHHHHHH-HHHHHHH
T ss_pred HHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHH-HHHHHHc
Confidence 34444333321 1100 00012356654 4899999999 999999999999 9999999988 8888875
Q ss_pred hCCCeEEEEEeccccccc
Q 025844 128 SRNFNVCAVYLLDSQFIT 145 (247)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~ 145 (247)
+|.++++| +|.+.
T Consensus 539 -~~~t~i~i----tH~l~ 551 (598)
T 3qf4_B 539 -EGKTSIII----AHRLN 551 (598)
T ss_dssp -TTSEEEEE----SCCTT
T ss_pred -CCCEEEEE----ecCHH
Confidence 57888766 45544
No 48
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.85 E-value=2.5e-21 Score=185.34 Aligned_cols=128 Identities=17% Similarity=0.211 Sum_probs=94.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-C-----cccChhhhHh----------H
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS----------L 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~-----~~~~v~e~i~----------~ 59 (247)
-+++|+||||||||||+++|+|+++|++|+|.++|.|... +.++| + .+.|++|++. +
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~ 449 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEI 449 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHH
Confidence 3689999999999999999999999999999999987642 12222 1 1337888875 3
Q ss_pred HHHHHHcCCCC------CC-----chhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 60 EDVMEELGLGP------NG-----GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 60 ~~~l~~~~L~~------~~-----~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
.+.++..++.+ .+ +.. ...+++|+ +++||||++. +|+++||||||+ ||+.+.+.+. +.+++
T Consensus 450 ~~~~~~~~~~~~i~~l~~g~~~~~~~~--~~~LSgGqrQrv~lARal~~--~p~illlDEpts~LD~~~~~~i~-~~l~~ 524 (587)
T 3qf4_A 450 VEAAKIAQIHDFIISLPEGYDSRVERG--GRNFSGGQKQRLSIARALVK--KPKVLILDDCTSSVDPITEKRIL-DGLKR 524 (587)
T ss_dssp HHHHHHTTCHHHHHTSSSGGGCEECSS--SCSSCHHHHHHHHHHHHHHT--CCSEEEEESCCTTSCHHHHHHHH-HHHHH
T ss_pred HHHHHHhCcHHHHHhcccchhhHhcCC--CCCcCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHH
Confidence 34444443311 10 000 12355554 4999999999 999999999999 9999999998 77888
Q ss_pred HHhCCCeEEEE
Q 025844 126 LKSRNFNVCAV 136 (247)
Q Consensus 126 l~~~~~~ii~v 136 (247)
+. +|+|+++|
T Consensus 525 ~~-~~~tvi~i 534 (587)
T 3qf4_A 525 YT-KGCTTFII 534 (587)
T ss_dssp HS-TTCEEEEE
T ss_pred hC-CCCEEEEE
Confidence 74 47888766
No 49
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.85 E-value=4e-22 Score=175.40 Aligned_cols=129 Identities=19% Similarity=0.111 Sum_probs=88.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC-CCCCCCCCCcccChhhhHh--------HHHHHHHcCCCCC--
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS--------LEDVMEELGLGPN-- 71 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d-~~~~~~~y~~~~~v~e~i~--------~~~~l~~~~L~~~-- 71 (247)
-+++|+||||||||||+|+|+|+++|++|+|.++|.- ...+...+++ .++++++. +.+.++.+++...
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~l~~~l~ 143 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMP-GTIKENIIGVSYDEYRYRSVIKACQLEEDIS 143 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCS-SBHHHHHHTTCCCHHHHHHHHHHTTCHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCc-ccHHHHhhCcccchHHHHHHHHHhChHHHHH
Confidence 3689999999999999999999999999999998721 0112222233 37888763 2334444544211
Q ss_pred ----Cch---hhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH-HHHHHhCCCeEEEE
Q 025844 72 ----GGL---IYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF-VDHLKSRNFNVCAV 136 (247)
Q Consensus 72 ----~~~---~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~l-l~~l~~~~~~ii~v 136 (247)
+.. ......+++|++ ++||++++. +|+++||||||+ ||+.++..++ ++ ++++. .|.+++++
T Consensus 144 ~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~ll~~~~-~~~tviiv 215 (290)
T 2bbs_A 144 KFAEKDNIVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFGYLDVLTEKEIF-ESCVCKLM-ANKTRILV 215 (290)
T ss_dssp TSTTGGGCBC----CCCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHH-HHCCCCCT-TTSEEEEE
T ss_pred hccccccchhcCccCcCCHHHHHHHHHHHHHHC--CCCEEEEECCcccCCHHHHHHHH-HHHHHHhh-CCCEEEEE
Confidence 000 000124666543 899999999 999999999999 9999998887 54 44443 47777666
No 50
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.6e-21 Score=187.06 Aligned_cols=144 Identities=14% Similarity=0.116 Sum_probs=104.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC--CCCCCCCCcccChhhhHh------------HHHHHHHcCCC
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AAENFDYPVAMDIRELIS------------LEDVMEELGLG 69 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~--~~~~~~y~~~~~v~e~i~------------~~~~l~~~~L~ 69 (247)
+++|+||||||||||+++|+|+++|++|+.. .+... ..+........++++++. ++++++.+++.
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~-~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALKPDEGQDI-PKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSCCSBCCCC-CSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCcCc-cCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 6899999999999999999999999999631 11100 011111112235555432 56788999998
Q ss_pred CCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH-hCCCeEEEEEeccccccc
Q 025844 70 PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFIT 145 (247)
Q Consensus 70 ~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~~~ii~v~l~d~~~~~ 145 (247)
+...... ..+++|+ +++||++|+. +|++|||||||+ ||+.++..++ ++++++. +.|.++++| +|.+.
T Consensus 459 ~~~~~~~--~~LSGGqkQRv~iAraL~~--~p~lLlLDEPT~gLD~~~~~~i~-~ll~~l~~~~g~tviiv----tHdl~ 529 (608)
T 3j16_B 459 DIIDQEV--QHLSGGELQRVAIVLALGI--PADIYLIDEPSAYLDSEQRIICS-KVIRRFILHNKKTAFIV----EHDFI 529 (608)
T ss_dssp TTSSSBS--SSCCHHHHHHHHHHHHTTS--CCSEEEECCTTTTCCHHHHHHHH-HHHHHHHHHHTCEEEEE----CSCHH
T ss_pred hhhcCCh--hhCCHHHHHHHHHHHHHHh--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHHhCCCEEEEE----eCCHH
Confidence 7655443 3566664 4999999999 999999999999 9999999998 8898885 458888766 46666
Q ss_pred chhHHhhhhHHH
Q 025844 146 DVTKFISGCMAS 157 (247)
Q Consensus 146 d~~~~~s~~l~~ 157 (247)
....+++.++..
T Consensus 530 ~~~~~aDrvivl 541 (608)
T 3j16_B 530 MATYLADKVIVF 541 (608)
T ss_dssp HHHHHCSEEEEC
T ss_pred HHHHhCCEEEEE
Confidence 666666655443
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.8e-21 Score=186.72 Aligned_cols=142 Identities=15% Similarity=0.136 Sum_probs=100.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEE-----------EeccCCCC-------CCC------CCCc---------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-----------IVNLDPAA-------ENF------DYPV--------- 49 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~-----------i~g~d~~~-------~~~------~y~~--------- 49 (247)
-+++|+||||||||||+|+|+|+++|++|+|. +.|.+... +.+ .|..
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGP 183 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcch
Confidence 37899999999999999999999999999982 22221100 000 0100
Q ss_pred ccChhhhH---------hHHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHH
Q 025844 50 AMDIRELI---------SLEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (247)
Q Consensus 50 ~~~v~e~i---------~~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~ 117 (247)
..++.+.+ .++++++.+++....... ...+++|+ +++||++++. +|++|||||||+ ||+.++..
T Consensus 184 ~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgGe~Qrv~iAraL~~--~p~llllDEPts~LD~~~~~~ 259 (608)
T 3j16_B 184 VQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRD--IEKLSGGELQRFAIGMSCVQ--EADVYMFDEPSSYLDVKQRLN 259 (608)
T ss_dssp SSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSC--TTTCCHHHHHHHHHHHHHHS--CCSEEEEECTTTTCCHHHHHH
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCC--hHHCCHHHHHHHHHHHHHHh--CCCEEEEECcccCCCHHHHHH
Confidence 01222222 377899999997654443 24566664 4999999999 999999999999 99999999
Q ss_pred HHHHHHHHHHhCCCeEEEEEecccccccchhHHhhh
Q 025844 118 VLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG 153 (247)
Q Consensus 118 ~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~ 153 (247)
+. +++++++++|.++++| +|.+.....+++.
T Consensus 260 l~-~~l~~l~~~g~tvi~v----tHdl~~~~~~~dr 290 (608)
T 3j16_B 260 AA-QIIRSLLAPTKYVICV----EHDLSVLDYLSDF 290 (608)
T ss_dssp HH-HHHHGGGTTTCEEEEE----CSCHHHHHHHCSE
T ss_pred HH-HHHHHHHhCCCEEEEE----eCCHHHHHHhCCE
Confidence 88 9999998778888766 3544444444443
No 52
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.79 E-value=2.4e-19 Score=184.62 Aligned_cols=130 Identities=18% Similarity=0.162 Sum_probs=92.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC------CcccChhhhHh----------H
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y------~~~~~v~e~i~----------~ 59 (247)
-.++|+||||||||||+++|.|+++|++|+|.++|.|... +.++| ..+-|++|++. +
T Consensus 417 ~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~ 496 (1284)
T 3g5u_A 417 QTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEI 496 (1284)
T ss_dssp CEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHH
Confidence 3689999999999999999999999999999999987532 11222 11348898885 2
Q ss_pred HHHHHHcCCC------CCCchh---hhHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844 60 EDVMEELGLG------PNGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (247)
Q Consensus 60 ~~~l~~~~L~------~~~~~~---~~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (247)
.+.++..++. |.+-.. ..-..+++|+ +++||||+.. +|++|||||||+ ||+.+.+.+. +.++.+.
T Consensus 497 ~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~--~p~iliLDEpts~LD~~~~~~i~-~~l~~~~ 573 (1284)
T 3g5u_A 497 EKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVR--NPKILLLDEATSALDTESEAVVQ-AALDKAR 573 (1284)
T ss_dssp HHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHH--CCSEEEEESTTCSSCHHHHHHHH-HHHHHHH
T ss_pred HHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHc
Confidence 3333333321 110000 0002355554 4999999999 999999999999 9999887776 7777764
Q ss_pred hCCCeEEEE
Q 025844 128 SRNFNVCAV 136 (247)
Q Consensus 128 ~~~~~ii~v 136 (247)
+|.|+++|
T Consensus 574 -~~~t~i~i 581 (1284)
T 3g5u_A 574 -EGRTTIVI 581 (1284)
T ss_dssp -TTSEEEEE
T ss_pred -CCCEEEEE
Confidence 47888766
No 53
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.78 E-value=5.2e-19 Score=182.58 Aligned_cols=155 Identities=17% Similarity=0.207 Sum_probs=107.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh-----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------- 58 (247)
-.++|+||+|||||||+++|.|+++|++|+|.++|.|... +.++| +| +-|+++|+.
T Consensus 1106 e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ 1185 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMA 1185 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHH
T ss_pred CEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHH
Confidence 3589999999999999999999999999999999998753 33333 22 337888863
Q ss_pred -HHHHHHHcCCC------CCCchhh---hHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 59 -LEDVMEELGLG------PNGGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 59 -~~~~l~~~~L~------~~~~~~~---~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
+.++++..++. |.|-... .-..+++|+ +++||||+.+ +|++|||||||+ ||+.+.+.+. +.+++
T Consensus 1186 ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr--~~~ILiLDEaTSaLD~~tE~~Iq-~~l~~ 1262 (1321)
T 4f4c_A 1186 QVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVR--NPKILLLDEATSALDTESEKVVQ-EALDR 1262 (1321)
T ss_dssp HHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHS--CCSEEEEESCCCSTTSHHHHHHH-HHHTT
T ss_pred HHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHh--CCCEEEEeCccccCCHHHHHHHH-HHHHH
Confidence 45566665542 1110000 001355554 4899999999 999999999999 9999987766 66666
Q ss_pred HHhCCCeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccch
Q 025844 126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 181 (247)
Q Consensus 126 l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~ 181 (247)
+. .++|+++| +|.+..... + -.|-|+.++-+++..
T Consensus 1263 ~~-~~~TvI~I----AHRLsTi~~-a---------------D~I~Vld~G~IvE~G 1297 (1321)
T 4f4c_A 1263 AR-EGRTCIVI----AHRLNTVMN-A---------------DCIAVVSNGTIIEKG 1297 (1321)
T ss_dssp TS-SSSEEEEE----CSSSSTTTT-C---------------SEEEEESSSSEEEEE
T ss_pred Hc-CCCEEEEe----ccCHHHHHh-C---------------CEEEEEECCEEEEEC
Confidence 53 47888776 455442222 1 256677777666554
No 54
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.78 E-value=5.6e-19 Score=181.91 Aligned_cols=130 Identities=15% Similarity=0.159 Sum_probs=95.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhHh-----------
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y-~~-----~~~v~e~i~----------- 58 (247)
-+++|+||||||||||+++|.|+++|++|+|.++|.|... ..++| +| +.|++|++.
T Consensus 1060 e~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~ 1139 (1284)
T 3g5u_A 1060 QTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYE 1139 (1284)
T ss_dssp SEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHH
Confidence 3689999999999999999999999999999999988642 23444 22 347888873
Q ss_pred -HHHHHHHcCCC------CCCchhh---hHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 025844 59 -LEDVMEELGLG------PNGGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (247)
Q Consensus 59 -~~~~l~~~~L~------~~~~~~~---~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (247)
+.+.++..++. |.+-... .-..+++|+ +++|||+++. +|++|||||||+ ||+.+...+. +.+++
T Consensus 1140 ~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~--~p~iLiLDEpTs~lD~~~~~~i~-~~l~~ 1216 (1284)
T 3g5u_A 1140 EIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVR--QPHILLLDEATSALDTESEKVVQ-EALDK 1216 (1284)
T ss_dssp HHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHH--CCSSEEEESCSSSCCHHHHHHHH-HHHHH
T ss_pred HHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHH
Confidence 33444444432 1110000 002355554 4999999999 999999999999 9999988887 77777
Q ss_pred HHhCCCeEEEE
Q 025844 126 LKSRNFNVCAV 136 (247)
Q Consensus 126 l~~~~~~ii~v 136 (247)
+ ..|.++++|
T Consensus 1217 ~-~~~~tvi~i 1226 (1284)
T 3g5u_A 1217 A-REGRTCIVI 1226 (1284)
T ss_dssp H-SSSSCEEEE
T ss_pred h-CCCCEEEEE
Confidence 6 457888766
No 55
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.77 E-value=1.2e-18 Score=169.12 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=80.6
Q ss_pred eEEEEEcCCCCcHHHHH---------------------HHHHhCCcCC-------CceEEEeccCCCC---CCCC-----
Q 025844 3 YAQLVIGPAGSGKSTYC---------------------SSLYRHCETV-------RRTMHIVNLDPAA---ENFD----- 46 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl---------------------~~l~g~l~~~-------~G~v~i~g~d~~~---~~~~----- 46 (247)
-+++|+||||||||||+ +++.|+.+|+ .|.+.+.+.+... ..++
T Consensus 45 e~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~~~~~~~ig~v~q~ 124 (670)
T 3ux8_A 45 KLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSRNPRSTVGTVTEI 124 (670)
T ss_dssp SEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-----CCBHHHHTTC
T ss_pred CEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhhccchhceeeeech
Confidence 36899999999999998 8889998888 4555555543211 0000
Q ss_pred ---------------------CCcccChhhhHhH------------------------HHHHHHcCCCCCC-chhhhHHh
Q 025844 47 ---------------------YPVAMDIRELISL------------------------EDVMEELGLGPNG-GLIYCMEH 80 (247)
Q Consensus 47 ---------------------y~~~~~v~e~i~~------------------------~~~l~~~~L~~~~-~~~~~~~~ 80 (247)
..+.+++.+++.. .++++.+||+... ... ...
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--~~~ 202 (670)
T 3ux8_A 125 YDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRS--AGT 202 (670)
T ss_dssp C-------------------------CC--------------------------CHHHHHHHHHTTCTTCCTTCB--GGG
T ss_pred hhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCCchhhhcCC--ccc
Confidence 0122345554421 1237778887542 222 245
Q ss_pred hhhhH--HHHHHHHhhcCCCCC--EEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 81 LEDNL--DDWLAEELDNYLDDD--YLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 81 l~~~~--~~~la~al~~~~~p~--~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
+++|+ +++||++|+. +|+ +|||||||+ ||+..+..++ +++++++++|.++++|
T Consensus 203 LSGGe~QRv~iArAL~~--~p~~~lLlLDEPtsgLD~~~~~~l~-~~l~~l~~~g~tvi~v 260 (670)
T 3ux8_A 203 LSGGEAQRIRLATQIGS--RLTGVLYVLDEPSIGLHQRDNDRLI-ATLKSMRDLGNTLIVV 260 (670)
T ss_dssp SCHHHHHHHHHHHHHHT--CCCSCEEEEECTTTTCCGGGHHHHH-HHHHHHHHTTCEEEEE
T ss_pred CCHHHHHHHHHHHHHhh--CCCCCEEEEECCccCCCHHHHHHHH-HHHHHHHHcCCEEEEE
Confidence 77665 4999999999 888 999999999 9999999999 9999998778888777
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.75 E-value=3.7e-19 Score=177.44 Aligned_cols=84 Identities=14% Similarity=0.069 Sum_probs=56.5
Q ss_pred HHHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEE
Q 025844 59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (247)
Q Consensus 59 ~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~ 135 (247)
++++++.+|+.+..........+++|++ +.||++++. +|++|||||||+ ||+.+...+. +.++ +.+.++++
T Consensus 880 i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~--~P~LLLLDEPT~gLD~~s~~~L~-~~L~---~~g~tVIi 953 (986)
T 2iw3_A 880 IEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQ--RPHLIVLDEPTNYLDRDSLGALS-KALK---EFEGGVII 953 (986)
T ss_dssp HHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTT--CCSEEEEECGGGTCCHHHHHHHH-HHHH---SCSSEEEE
T ss_pred HHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHh--CCCEEEEECCccCCCHHHHHHHH-HHHH---HhCCEEEE
Confidence 5678888888642101111345777654 899999999 999999999999 9999877666 5443 33567766
Q ss_pred EEecccccccchhHHhh
Q 025844 136 VYLLDSQFITDVTKFIS 152 (247)
Q Consensus 136 v~l~d~~~~~d~~~~~s 152 (247)
+ +|.......+++
T Consensus 954 I----SHD~e~v~~l~D 966 (986)
T 2iw3_A 954 I----THSAEFTKNLTE 966 (986)
T ss_dssp E----CSCHHHHTTTCC
T ss_pred E----ECCHHHHHHhCC
Confidence 5 455444444443
No 57
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.75 E-value=2.4e-18 Score=177.63 Aligned_cols=130 Identities=20% Similarity=0.196 Sum_probs=94.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------CCCCC------CcccChhhhHh----------H
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------~~~~y------~~~~~v~e~i~----------~ 59 (247)
-.++|+||+|||||||+++|.|+++|++|+|.++|.|... +.++| -.+-||+||+. +
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v 524 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEM 524 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHH
T ss_pred cEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHH
Confidence 3689999999999999999999999999999999987653 12333 23558999885 3
Q ss_pred HHHHHHcCCC------CCCchhh---hHHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 025844 60 EDVMEELGLG------PNGGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (247)
Q Consensus 60 ~~~l~~~~L~------~~~~~~~---~~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (247)
.++++..++. |+|.... .-..+++|+ |++||||+.. +|+++||||||+ ||..+.+.+. +.++.+.
T Consensus 525 ~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~--~~~IliLDE~tSaLD~~te~~i~-~~l~~~~ 601 (1321)
T 4f4c_A 525 VAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVR--NPKILLLDEATSALDAESEGIVQ-QALDKAA 601 (1321)
T ss_dssp HHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCTTTHHHHH-HHHHHHH
T ss_pred HHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHcc--CCCEEEEecccccCCHHHHHHHH-HHHHHHh
Confidence 4444444331 1110000 001355554 4999999999 999999999999 9999977766 7777775
Q ss_pred hCCCeEEEE
Q 025844 128 SRNFNVCAV 136 (247)
Q Consensus 128 ~~~~~ii~v 136 (247)
+ |+|+++|
T Consensus 602 ~-~~T~iii 609 (1321)
T 4f4c_A 602 K-GRTTIII 609 (1321)
T ss_dssp T-TSEEEEE
T ss_pred C-CCEEEEE
Confidence 4 6777666
No 58
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.74 E-value=3.7e-19 Score=149.33 Aligned_cols=122 Identities=17% Similarity=0.213 Sum_probs=72.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEecc--CC--CCCCCCC-CcccChhhhH-hH-HHHHHHc-CCCCCCch
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL--DP--AAENFDY-PVAMDIRELI-SL-EDVMEEL-GLGPNGGL 74 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~--d~--~~~~~~y-~~~~~v~e~i-~~-~~~l~~~-~L~~~~~~ 74 (247)
-+++|+||||||||||+++|+|+ +|++|+|..... +. ....++| +++. ++++ .. ......+ +.......
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~--~enl~~~~~~~~~~~~~~~~~~~~ 99 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL--NEKIDPYLRPLHDALRDMVEPEVI 99 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC--------CTTTHHHHHHHTTTSCTTHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH--HHHHHHHHHHHHHHHHHhccHHHH
Confidence 36899999999999999999999 999999854211 11 1234566 3321 3333 11 0011111 10010000
Q ss_pred hhhHHh-hhhhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEE
Q 025844 75 IYCMEH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVC 134 (247)
Q Consensus 75 ~~~~~~-l~~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii 134 (247)
...++. +.+.++++||++++. +|++|||||||+- ++..+. ++++++ +.|.+++
T Consensus 100 ~~~l~~glGq~qrv~lAraL~~--~p~lllLDEPts~---~~~~l~-~~l~~l-~~g~tii 153 (208)
T 3b85_A 100 PKLMEAGIVEVAPLAYMRGRTL--NDAFVILDEAQNT---TPAQMK-MFLTRL-GFGSKMV 153 (208)
T ss_dssp HHHHHTTSEEEEEGGGGTTCCB--CSEEEEECSGGGC---CHHHHH-HHHTTB-CTTCEEE
T ss_pred HHHHHhCCchHHHHHHHHHHhc--CCCEEEEeCCccc---cHHHHH-HHHHHh-cCCCEEE
Confidence 000111 122234899999999 9999999999987 666666 777777 5677777
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.72 E-value=1e-17 Score=167.12 Aligned_cols=121 Identities=16% Similarity=0.252 Sum_probs=83.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh-CCc--C--CCceEEEeccCCCCCCC-CCCcccChhhhHh---------HHHHHHHcC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYR-HCE--T--VRRTMHIVNLDPAAENF-DYPVAMDIRELIS---------LEDVMEELG 67 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g-~l~--~--~~G~v~i~g~d~~~~~~-~y~~~~~v~e~i~---------~~~~l~~~~ 67 (247)
-+++|+||||||||||+|+|+| .+. + ....+.+.. +.. ...+.+++.+++. ++++++.+|
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~-----q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lg 536 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVE-----HDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFG 536 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETT-----CCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEc-----ccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcC
Confidence 3689999999999999999995 221 0 001111111 111 1234556777653 677899999
Q ss_pred CCC-CCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 68 LGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 68 L~~-~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
+.. ...+. ...+++|++ ++||++++. +|++|||||||+ ||+.++..+. +++++ .|.+++++
T Consensus 537 L~~~~~~~~--~~~LSGGqkQRvaLArAL~~--~P~lLLLDEPTs~LD~~~~~~l~-~~L~~---~g~tvIiv 601 (986)
T 2iw3_A 537 FTDEMIAMP--ISALSGGWKMKLALARAVLR--NADILLLDEPTNHLDTVNVAWLV-NYLNT---CGITSITI 601 (986)
T ss_dssp CCHHHHHSB--GGGCCHHHHHHHHHHHHHHT--TCSEEEEESTTTTCCHHHHHHHH-HHHHH---SCSEEEEE
T ss_pred CChhhhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHH-HHHHh---CCCEEEEE
Confidence 852 21111 345777654 899999999 999999999999 9999998888 77766 47787766
No 60
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.72 E-value=1.2e-16 Score=136.59 Aligned_cols=229 Identities=23% Similarity=0.435 Sum_probs=151.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l 81 (247)
..++++.|+.|+||||++..++..+. .+.++.+.+.|++....++.+..++++.++.++++.. ++++++....+.+..
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE-GYGPNGAIVESYDRL 91 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTT-TCCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhc-cCCCCCcEEecHHHH
Confidence 46889999999999999999998887 6678999999998777777666677777777777766 666665544443222
Q ss_pred hhhHHHHHHHHh---hcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhhhhHHHh
Q 025844 82 EDNLDDWLAEEL---DNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL 158 (247)
Q Consensus 82 ~~~~~~~la~al---~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~ 158 (247)
.... .++.+.+ .. +.+++|+|.|++.+......+...+.+.+ .. .++++++|+....++..+........
T Consensus 92 ~~~~-~~l~~~l~~~~~--~~d~iiiDtpG~~~~~~~~~l~~~~~~~~---~~-~~iv~vvD~~~~~~~~~~~~~~~~~~ 164 (262)
T 1yrb_A 92 MEKF-NEYLNKILRLEK--ENDYVLIDTPGQMETFLFHEFGVRLMENL---PY-PLVVYISDPEILKKPNDYCFVRFFAL 164 (262)
T ss_dssp HTTH-HHHHHHHHHHHH--HCSEEEEECCSSHHHHHHSHHHHHHHHTS---SS-CEEEEEECGGGCCSHHHHHHHHHHHH
T ss_pred hhhH-HHHHHHHHHHhh--cCCEEEEeCCCccchhhhhhhHHHHHHHH---hh-ceEEeccchhhhcCHHHHHHHHHHHH
Confidence 2222 3333333 23 46999999999987766544432333333 22 55667788877777777665443333
Q ss_pred HHHhhccCCeeeeecccccccchhhh---hhhcccCHHHHHHHhhc-ccchhHHHHHHHHHHHhhhcCC-eeeEEeeccC
Q 025844 159 SAMVQLELPHVNILSKMDLVTNKKEI---EDYLNPESQFLLSELNQ-HMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRK 233 (247)
Q Consensus 159 ~~~~~~~~p~i~vlsk~dll~~~~~~---~~~~~~~~~~l~~~~~~-~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~ 233 (247)
......+.|.+.|+||+|+.... .. ..++. +.+.+.+.+.. .....|.++ ++++++++++. ..+.|+|+.+
T Consensus 165 ~~~~~~~~p~~iv~NK~D~~~~~-~~~~~~~~l~-~~~~~~~~l~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~SA~~ 240 (262)
T 1yrb_A 165 LIDLRLGATTIPALNKVDLLSEE-EKERHRKYFE-DIDYLTARLKLDPSMQGLMAY--KMCSMMTEVLPPVRVLYLSAKT 240 (262)
T ss_dssp HHHHHHTSCEEEEECCGGGCCHH-HHHHHHHHHH-CHHHHHHHHHHCCSHHHHHHH--HHHHHHHHHSCCCCCEECCTTT
T ss_pred HHhcccCCCeEEEEecccccccc-cHHHHHHHHh-ChHHHHHHHhccccccchhHh--HHHHHHHHhcCcccceEEEecC
Confidence 34455688999999999998654 22 22222 33333333321 123456664 77888888876 4899999988
Q ss_pred hH---HHHHHhhh
Q 025844 234 ES---RLLSQIMK 243 (247)
Q Consensus 234 ~~---~l~~~id~ 243 (247)
++ .|+..|.+
T Consensus 241 ~~gi~~l~~~i~~ 253 (262)
T 1yrb_A 241 REGFEDLETLAYE 253 (262)
T ss_dssp CTTHHHHHHHHHH
T ss_pred cccHHHHHHHHHH
Confidence 77 66666654
No 61
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.71 E-value=1.9e-18 Score=140.14 Aligned_cols=49 Identities=12% Similarity=0.066 Sum_probs=41.0
Q ss_pred HHHHHHHHhhcCCCCCEEEEeCCCc-ccHH----------------hHHHHHHHHHHHHHhCCCeEEEE
Q 025844 85 LDDWLAEELDNYLDDDYLVFDCPGQ-IELF----------------THVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 85 ~~~~la~al~~~~~p~~lilDEPt~-LD~~----------------~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
++++||++++. +|++++||||++ ||+. .+..+. ++++.++++|.+++++
T Consensus 90 qrv~iAral~~--~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~-~~l~~l~~~g~tvi~v 155 (171)
T 4gp7_A 90 PLIEMAKDYHC--FPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMK-KSIKGLQREGFRYVYI 155 (171)
T ss_dssp HHHHHHHHTTC--EEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHH-HHSTTHHHHTCSEEEE
T ss_pred HHHHHHHHcCC--cEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhh-hhhhhHHhcCCcEEEE
Confidence 44899999999 999999999999 9999 556666 7777777668888766
No 62
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.70 E-value=3.7e-17 Score=158.53 Aligned_cols=74 Identities=18% Similarity=0.158 Sum_probs=57.3
Q ss_pred HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHHhhcCCCC---CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCe
Q 025844 59 LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDD---DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN 132 (247)
Q Consensus 59 ~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~al~~~~~p---~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ 132 (247)
..+.++.+++.......+ ...+++|+ +++||++|+. +| ++||+||||+ ||+.+...++ ++++++++.|.+
T Consensus 523 ~~~~l~~~~l~~~~~~~~-~~~LSgG~~qrv~iAraL~~--~p~~p~llllDEPt~~LD~~~~~~i~-~~l~~l~~~g~t 598 (670)
T 3ux8_A 523 KLETLYDVGLGYMKLGQP-ATTLSGGEAQRVKLAAELHR--RSNGRTLYILDEPTTGLHVDDIARLL-DVLHRLVDNGDT 598 (670)
T ss_dssp HHHHHHHTTCTTSBTTCC-GGGCCHHHHHHHHHHHHHHS--CCCSCEEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCE
T ss_pred HHHHHHHcCCchhhccCC-chhCCHHHHHHHHHHHHHhh--CCCCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHCCCE
Confidence 456777888864321111 24577665 4999999998 76 5999999999 9999999999 999999877888
Q ss_pred EEEE
Q 025844 133 VCAV 136 (247)
Q Consensus 133 ii~v 136 (247)
+++|
T Consensus 599 vi~v 602 (670)
T 3ux8_A 599 VLVI 602 (670)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8777
No 63
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.68 E-value=3.4e-18 Score=156.96 Aligned_cols=145 Identities=14% Similarity=0.104 Sum_probs=99.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCC----CCCcccChhhhH-------hHHHHHHHcCCCCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENF----DYPVAMDIRELI-------SLEDVMEELGLGPN 71 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~----~y~~~~~v~e~i-------~~~~~l~~~~L~~~ 71 (247)
.+++|+||||||||||+|+|+|+.+|++|+|.+.|.+...... +..+.+++.|+. .++++++.+++...
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~ 149 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY 149 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence 4799999999999999999999999999999988865421110 112234444433 37899999998764
Q ss_pred CchhhhHHhhhh----hHHHHHHHHhhcC--------CCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH-----hCC---
Q 025844 72 GGLIYCMEHLED----NLDDWLAEELDNY--------LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-----SRN--- 130 (247)
Q Consensus 72 ~~~~~~~~~l~~----~~~~~la~al~~~--------~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-----~~~--- 130 (247)
..... ++. .+++.+|+++... ++|+++++||||+ ||+..+..+. ++++++. +.|
T Consensus 150 ~~~~~----lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~-~~l~~l~~~~l~~~g~~~ 224 (413)
T 1tq4_A 150 DFFII----ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVL-QDIRLNCVNTFRENGIAE 224 (413)
T ss_dssp SEEEE----EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHH-HHHHHHHHHHHHHTTCSS
T ss_pred CCeEE----eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHH-HHHHHHHHHHHHhcCCCC
Confidence 32221 332 3448888888762 2688999999999 9999999988 7777763 332
Q ss_pred CeEEEEEecccccccc--hhHHhhhhH
Q 025844 131 FNVCAVYLLDSQFITD--VTKFISGCM 155 (247)
Q Consensus 131 ~~ii~v~l~d~~~~~d--~~~~~s~~l 155 (247)
.+++ ++++|...+ ...+++.+.
T Consensus 225 ~~ii---liSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 225 PPIF---LLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp CCEE---ECCTTCTTSTTHHHHHHHHH
T ss_pred CcEE---EEecCcCCccCHHHHHHHHH
Confidence 2332 456777665 666666554
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.67 E-value=6.6e-18 Score=157.20 Aligned_cols=120 Identities=15% Similarity=0.154 Sum_probs=81.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCc-e-EEEeccCCCCCCCCC-Cc---------ccChhhhHh-------------
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRR-T-MHIVNLDPAAENFDY-PV---------AMDIRELIS------------- 58 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G-~-v~i~g~d~~~~~~~y-~~---------~~~v~e~i~------------- 58 (247)
+++|+||||||||||+|+|+|+++|++| + |+++| ++. +.+.| ++ .+++++++.
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~~~-~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~~~~~ 217 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-DPQ-QPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLHN 217 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-CTT-SCSSSCSSCCEEEECCSCCCTTCTTCSCBCBSSCCSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-Ccc-CCeeeeccchhhcccccccchhhhhcccccccCcchHHH
Confidence 6899999999999999999999999999 8 99987 442 22333 11 234544331
Q ss_pred HHHHHHHcCCCCCCchhhhHHhhhhhH--HHHHHHH--hhcCCCCCE----EEEeC-CCc-ccHHhHHHHHHHHHHHHHh
Q 025844 59 LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEE--LDNYLDDDY----LVFDC-PGQ-IELFTHVPVLRNFVDHLKS 128 (247)
Q Consensus 59 ~~~~l~~~~L~~~~~~~~~~~~l~~~~--~~~la~a--l~~~~~p~~----lilDE-Pt~-LD~~~~~~~~~~ll~~l~~ 128 (247)
+.++++.+|+..... ...+++++ ++++|++ ++. +|++ +|+|| |++ ||+. ...+. +++++
T Consensus 218 ~~~ll~~~gl~~~~~----~~~LSgGq~qrlalAra~rL~~--~p~i~~sGLlLDEpPts~LD~~-~~~l~-~l~~~--- 286 (460)
T 2npi_A 218 KQPMVKNFGLERINE----NKDLYLECISQLGQVVGQRLHL--DPQVRRSGCIVDTPSISQLDEN-LAELH-HIIEK--- 286 (460)
T ss_dssp BCCEECCCCSSSGGG----CHHHHHHHHHHHHHHHHHHHHH--CHHHHHSCEEEECCCGGGSCSS-CHHHH-HHHHH---
T ss_pred HHHHHHHhCCCcccc----hhhhhHHHHHHHHHHHHHHhcc--CcccCcceEEEeCCcccccChh-HHHHH-HHHHH---
Confidence 223444555544322 23455554 3889999 999 9999 99999 999 9998 33322 44433
Q ss_pred CCCeEEEE
Q 025844 129 RNFNVCAV 136 (247)
Q Consensus 129 ~~~~ii~v 136 (247)
.+.++++|
T Consensus 287 ~~~tviiV 294 (460)
T 2npi_A 287 LNVNIMLV 294 (460)
T ss_dssp TTCCEEEE
T ss_pred hCCCEEEE
Confidence 36666555
No 65
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.66 E-value=4.3e-17 Score=133.43 Aligned_cols=130 Identities=11% Similarity=0.055 Sum_probs=73.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC-------CCCCCCC-CcccChhhhHhHHHHHHHcCCCCCCchh
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-------AAENFDY-PVAMDIRELISLEDVMEELGLGPNGGLI 75 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~-------~~~~~~y-~~~~~v~e~i~~~~~l~~~~L~~~~~~~ 75 (247)
.++|+||||||||||+++|+|++. +.+.|.+. ..+.++| +++.+..+++ +..++..+.....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~-----~~~~~~~~~~~~~ 71 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITTEGKKKI-----FSSKFFTSKKLVG 71 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEETTCCEEE-----EEETTCCCSSEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecCcHHHHH-----HHhhcCCcccccc
Confidence 578999999999999999999985 34444322 1123344 2222222222 1111221110000
Q ss_pred hhHHhhhhhH--HHHHHHH-----hhcCCCCCEEEEeC--CCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccc
Q 025844 76 YCMEHLEDNL--DDWLAEE-----LDNYLDDDYLVFDC--PGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT 145 (247)
Q Consensus 76 ~~~~~l~~~~--~~~la~a-----l~~~~~p~~lilDE--Pt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~ 145 (247)
.....+++++ ++.+|++ ++. +|+++|+|| |++ +|+..+..+. ++++ +.+.+++++ .|.+|...
T Consensus 72 ~~~~~lSgG~~qr~~la~aa~~~~l~~--~p~llilDEigp~~~ld~~~~~~l~-~~l~---~~~~~~i~~-~H~~h~~~ 144 (178)
T 1ye8_A 72 SYGVNVQYFEELAIPILERAYREAKKD--RRKVIIIDEIGKMELFSKKFRDLVR-QIMH---DPNVNVVAT-IPIRDVHP 144 (178)
T ss_dssp TEEECHHHHHHHHHHHHHHHHHHHHHC--TTCEEEECCCSTTGGGCHHHHHHHH-HHHT---CTTSEEEEE-CCSSCCSH
T ss_pred ccccCcCHHHHHHHHHHhhcccccccc--CCCEEEEeCCCCcccCCHHHHHHHH-HHHh---cCCCeEEEE-EccCCCch
Confidence 0012345544 3888996 888 999999999 999 9998876655 4443 345545544 23455544
Q ss_pred chhHH
Q 025844 146 DVTKF 150 (247)
Q Consensus 146 d~~~~ 150 (247)
....+
T Consensus 145 ~~~~i 149 (178)
T 1ye8_A 145 LVKEI 149 (178)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 66
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.63 E-value=4.3e-16 Score=137.61 Aligned_cols=126 Identities=13% Similarity=0.168 Sum_probs=85.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------------CCCCC-Cc-------ccChhhhHhHHH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDY-PV-------AMDIRELISLED 61 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------------~~~~y-~~-------~~~v~e~i~~~~ 61 (247)
.+++++|||||||||+++.|+|+++|++|+|.+.|.|... ..++| ++ ..++++++....
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~~ 180 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGK 180 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999988632 12444 22 223455554211
Q ss_pred -------HHHHcCCCCCCchhhhHHhhhhhHHHHHHHHhhcCCCCC--EEEEeCCCc-ccHHhHHHHHHHHHHHHH-hCC
Q 025844 62 -------VMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDD--YLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRN 130 (247)
Q Consensus 62 -------~l~~~~L~~~~~~~~~~~~l~~~~~~~la~al~~~~~p~--~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~ 130 (247)
+++.+|+.+..... +..++ .+++.+|+++.. +|+ +|++| ||+ +|+.... +.+. +.|
T Consensus 181 ~~~~d~~lldt~gl~~~~~~~--~~eLS-kqr~~iaral~~--~P~e~lLvLD-ptsglD~~~~~-------~~~~~~~g 247 (302)
T 3b9q_A 181 EEGYDVVLCDTSGRLHTNYSL--MEELI-ACKKAVGKIVSG--APNEILLVLD-GNTGLNMLPQA-------REFNEVVG 247 (302)
T ss_dssp HTTCSEEEECCCCCSSCCHHH--HHHHH-HHHHHHHTTSTT--CCSEEEEEEE-GGGGGGGHHHH-------HHHHHHTC
T ss_pred HcCCcchHHhcCCCCcchhHH--HHHHH-HHHHHHHHhhcc--CCCeeEEEEe-CCCCcCHHHHH-------HHHHHhcC
Confidence 22233444433222 34455 455899999999 999 99999 999 9987542 3343 357
Q ss_pred CeEEEEEeccc
Q 025844 131 FNVCAVYLLDS 141 (247)
Q Consensus 131 ~~ii~v~l~d~ 141 (247)
.+++++..+|.
T Consensus 248 ~t~iiiThlD~ 258 (302)
T 3b9q_A 248 ITGLILTKLDG 258 (302)
T ss_dssp CCEEEEECCSS
T ss_pred CCEEEEeCCCC
Confidence 77766643443
No 67
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.60 E-value=2.1e-15 Score=136.08 Aligned_cols=147 Identities=14% Similarity=0.165 Sum_probs=94.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------------CCCCC-Cc-------ccChhhhHhHHH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDY-PV-------AMDIRELISLED 61 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------------~~~~y-~~-------~~~v~e~i~~~~ 61 (247)
.+++|+|||||||||+++.|+|+++|++|+|.+.|.|... ..++| ++ ..++++++....
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~~ 237 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGK 237 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHHH
Confidence 5899999999999999999999999999999999988632 12344 22 223455543211
Q ss_pred -------HHHHcCCCCCCchhhhHHhhhhhHHHHHHHHhhcCCCCC--EEEEeCCCc-ccHHhHHHHHHHHHHHHH-hCC
Q 025844 62 -------VMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDD--YLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRN 130 (247)
Q Consensus 62 -------~l~~~~L~~~~~~~~~~~~l~~~~~~~la~al~~~~~p~--~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~ 130 (247)
+++.+|+.+..... +..++ .+++.+|+++.. +|+ +|++| ||+ +|+..+. +.+. +.+
T Consensus 238 ~~~~d~~lldt~Gl~~~~~~~--~~eLS-kqr~~iaral~~--~P~e~lLvLD-pttglD~~~~~-------~~~~~~~g 304 (359)
T 2og2_A 238 EEGYDVVLCDTSGRLHTNYSL--MEELI-ACKKAVGKIVSG--APNEILLVLD-GNTGLNMLPQA-------REFNEVVG 304 (359)
T ss_dssp HTTCSEEEEECCCCSSCCHHH--HHHHH-HHHHHHHHHSTT--CCSEEEEEEE-GGGGGGGHHHH-------HHHHHHTC
T ss_pred hCCCHHHHHHhcCCChhhhhH--HHHHH-HHHHHHHHHHhc--CCCceEEEEc-CCCCCCHHHHH-------HHHHHhcC
Confidence 12234444433222 34555 455999999999 999 99999 999 9987542 2333 347
Q ss_pred CeEEEEEecccccccchhHHhhhhHHHhHHHhhccCCeeee
Q 025844 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNI 171 (247)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~v 171 (247)
.+++++..+|... ... ...+.....+.|..-+
T Consensus 305 ~t~iiiThlD~~~--~gG-------~~lsi~~~~~~pI~~i 336 (359)
T 2og2_A 305 ITGLILTKLDGSA--RGG-------CVVSVVEELGIPVKFI 336 (359)
T ss_dssp CCEEEEESCTTCS--CTH-------HHHHHHHHHCCCEEEE
T ss_pred CeEEEEecCcccc--ccc-------HHHHHHHHhCCCEEEE
Confidence 7776664344321 111 1234445567787543
No 68
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.58 E-value=2.2e-15 Score=148.69 Aligned_cols=73 Identities=25% Similarity=0.194 Sum_probs=58.5
Q ss_pred HHHHHHHcCCCCCC-chhhhHHhhhhhH--HHHHHHHhhcCCC---CCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCC
Q 025844 59 LEDVMEELGLGPNG-GLIYCMEHLEDNL--DDWLAEELDNYLD---DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNF 131 (247)
Q Consensus 59 ~~~~l~~~~L~~~~-~~~~~~~~l~~~~--~~~la~al~~~~~---p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~ 131 (247)
+.++++.++|+... .+. ...+++|. ++.||++|+. + |+++||||||+ ||+.....+. ++++++.+.|.
T Consensus 710 ~~~~L~~~gL~~~~l~~~--~~~LSGGekQRv~LAraL~~--~p~~p~lLILDEPTsGLD~~~~~~l~-~lL~~L~~~G~ 784 (842)
T 2vf7_A 710 ALDTLREVGLGYLRLGQP--ATELSGGEAQRIKLATELRR--SGRGGTVYVLDEPTTGLHPADVERLQ-RQLVKLVDAGN 784 (842)
T ss_dssp HHHHHHHTTCTTSBTTCC--GGGCCHHHHHHHHHHHTTSS--CCSSCEEEEEECTTTTCCHHHHHHHH-HHHHHHHHTTC
T ss_pred HHHHHHHcCCCcccccCC--cccCCHHHHHHHHHHHHHHh--CCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCC
Confidence 46788899998732 222 24566654 4899999988 7 69999999999 9999999999 99999987888
Q ss_pred eEEEE
Q 025844 132 NVCAV 136 (247)
Q Consensus 132 ~ii~v 136 (247)
+|++|
T Consensus 785 tVIvi 789 (842)
T 2vf7_A 785 TVIAV 789 (842)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88776
No 69
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.56 E-value=6.4e-16 Score=148.39 Aligned_cols=157 Identities=17% Similarity=0.107 Sum_probs=86.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCcC-CCceEEEeccCCC----------CCCCCC-C------cccChhhhHhHHHHHHHc
Q 025844 5 QLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPA----------AENFDY-P------VAMDIRELISLEDVMEEL 66 (247)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l~~-~~G~v~i~g~d~~----------~~~~~y-~------~~~~v~e~i~~~~~l~~~ 66 (247)
++|+||||||||||+++|+|+..| ++|.|.+.|.+.. ...++| + +..++++++.. ....+
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~--~~~~~ 125 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINK--AQNAI 125 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHH--HHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHH--HHHHh
Confidence 799999999999999999999988 7999999887631 112333 2 23345554432 11222
Q ss_pred CCCCCCchhhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCC------Cc-ccHHhHHHHHHHHHHHHHhCCCe-EEEEEe
Q 025844 67 GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCP------GQ-IELFTHVPVLRNFVDHLKSRNFN-VCAVYL 138 (247)
Q Consensus 67 ~L~~~~~~~~~~~~l~~~~~~~la~al~~~~~p~~lilDEP------t~-LD~~~~~~~~~~ll~~l~~~~~~-ii~v~l 138 (247)
+....+ .+... ..++.+... .|+++++||| |+ +|+.....+. ++++.+.+.+.+ ++++.-
T Consensus 126 ~~~~~~--------~s~~~-i~l~i~~~~--~p~LlLlDePGi~~~~t~~LD~~~~~~i~-~li~~~l~~~~~iil~vvt 193 (608)
T 3szr_A 126 AGEGMG--------ISHEL-ITLEISSRD--VPDLTLIDLPGITRVAVGNQPADIGYKIK-TLIKKYIQRQETISLVVVP 193 (608)
T ss_dssp HCSSSC--------CCSCC-EEEEEEESS--SCCEEEEECCC------CCSSCSHHHHHH-HHHHHHTTSSSCCEEEEEE
T ss_pred cCCccc--------cchHH-HHHHhcCCC--CCceeEeeCCCccccccCCCCHHHHHHHH-HHHHHHHhcCCCCceEEEe
Confidence 211111 00000 111112234 7999999999 88 9999988888 888886443333 323322
Q ss_pred cccccccchhHHhhhhHHHhHHHhhccCCeeeeecccccccch
Q 025844 139 LDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 181 (247)
Q Consensus 139 ~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~ 181 (247)
++....... .+-.....-..+.+.+-|++|.|++.+.
T Consensus 194 ~~~d~a~~~------~l~la~~v~~~g~rtI~VlTK~Dlv~~g 230 (608)
T 3szr_A 194 SNVDIATTE------ALSMAQEVDPEGDRTIGILTKPDLVDKG 230 (608)
T ss_dssp SSSCTTTCH------HHHHHHHHCSSCCSEEEEEECGGGSSSS
T ss_pred ccchhccHH------HHHHHHHHhhcCCceEEEecchhhcCcc
Confidence 232211111 1111222234567899999999999653
No 70
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.55 E-value=5.3e-16 Score=134.94 Aligned_cols=118 Identities=14% Similarity=0.174 Sum_probs=61.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC----CCCCC-------CcccChhhhHhH-----------
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDY-------PVAMDIRELISL----------- 59 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~----~~~~y-------~~~~~v~e~i~~----------- 59 (247)
.|.++|+||||||||||+++|+|+.+|++|+|.+.|.++.. ..++| .+.+++.|++..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 47899999999999999999999999999999999876522 11222 234455555431
Q ss_pred --HHHHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEE
Q 025844 60 --EDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC 134 (247)
Q Consensus 60 --~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii 134 (247)
.++++ ... ..+..+.++.|++ +.+|+++ +.++++|||+. +++... ++++.+.+. .+++
T Consensus 82 ~i~~~~~----~~~--~~~~~~~LS~G~~qrv~iaRal-----~~lllldep~~gL~~lD~-----~~l~~L~~~-~~vI 144 (270)
T 3sop_A 82 PIEKYIN----EQY--EKFLKEEVNIARKKRIPDTRVH-----CCLYFISPTGHSLRPLDL-----EFMKHLSKV-VNII 144 (270)
T ss_dssp HHHHHHH----HHH--HHHHHHHSCTTCCSSCCCCSCC-----EEEEEECCCSSSCCHHHH-----HHHHHHHTT-SEEE
T ss_pred HHHHHHH----HHH--HhhhHHhcCcccchhhhhheee-----eeeEEEecCCCcCCHHHH-----HHHHHHHhc-CcEE
Confidence 11111 000 0001122333221 4445443 34999999998 998762 566777655 6665
Q ss_pred EE
Q 025844 135 AV 136 (247)
Q Consensus 135 ~v 136 (247)
+|
T Consensus 145 ~V 146 (270)
T 3sop_A 145 PV 146 (270)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 71
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.55 E-value=2.5e-14 Score=142.40 Aligned_cols=73 Identities=22% Similarity=0.276 Sum_probs=57.0
Q ss_pred HHHHHHHcCCCCCC-chhhhHHhhhhhH--HHHHHHHhhcCCCC---CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCC
Q 025844 59 LEDVMEELGLGPNG-GLIYCMEHLEDNL--DDWLAEELDNYLDD---DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNF 131 (247)
Q Consensus 59 ~~~~l~~~~L~~~~-~~~~~~~~l~~~~--~~~la~al~~~~~p---~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~ 131 (247)
..++++.+||+... ++. ...+++|. ++.||++|+. +| +++||||||+ ||+.....++ ++++++.+.|.
T Consensus 785 ~~~~L~~vGL~~~~lgq~--~~~LSGGErQRV~LAraL~~--~p~~p~LLILDEPTsGLD~~~~~~L~-~lL~~L~~~G~ 859 (916)
T 3pih_A 785 TLQVLHDVGLGYVKLGQP--ATTLSGGEAQRIKLASELRK--RDTGRTLYILDEPTVGLHFEDVRKLV-EVLHRLVDRGN 859 (916)
T ss_dssp HHHHHHHTTGGGSBTTCC--STTCCHHHHHHHHHHHHHTS--CCCSSEEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTC
T ss_pred HHHHHHHcCCchhhccCC--ccCCCHHHHHHHHHHHHHhh--CCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhcCC
Confidence 45778888886432 111 23566654 4899999987 54 7999999999 9999999999 99999987788
Q ss_pred eEEEE
Q 025844 132 NVCAV 136 (247)
Q Consensus 132 ~ii~v 136 (247)
+|++|
T Consensus 860 TVIvI 864 (916)
T 3pih_A 860 TVIVI 864 (916)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88777
No 72
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.55 E-value=4.8e-15 Score=135.21 Aligned_cols=52 Identities=19% Similarity=0.036 Sum_probs=44.6
Q ss_pred hhhhHH--HHHHHHhhcCCCC--CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 81 LEDNLD--DWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 81 l~~~~~--~~la~al~~~~~p--~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
+++|++ +.||++++. +| ++|||||||+ ||+.+...+. ++++++. +|.+|++|
T Consensus 296 lSgGe~qrl~lA~~l~~--~~~~~~LlLDEpt~~LD~~~~~~l~-~~L~~l~-~~~~vi~i 352 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVL--GADTPSVVFDEVDAGIGGAAAIAVA-EQLSRLA-DTRQVLVV 352 (415)
T ss_dssp SCHHHHHHHHHHHHHHH--CCSSSEEEESSTTTTCCHHHHHHHH-HHHHHHT-TTSEEEEE
T ss_pred cCHhHHHHHHHHHHHHh--CCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHh-CCCEEEEE
Confidence 466543 889999999 99 9999999999 9999999998 8899986 57888766
No 73
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.55 E-value=1.8e-14 Score=143.20 Aligned_cols=73 Identities=19% Similarity=0.229 Sum_probs=58.0
Q ss_pred HHHHHHHcCCCC-CCchhhhHHhhhhhH--HHHHHHHhhcCCC---CCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCC
Q 025844 59 LEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLD---DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNF 131 (247)
Q Consensus 59 ~~~~l~~~~L~~-~~~~~~~~~~l~~~~--~~~la~al~~~~~---p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~ 131 (247)
..++++.+||+. ..+.. ...+++|. ++.||++|+. + |+++||||||+ ||+..+..++ ++++++.+.|.
T Consensus 825 ~~~~L~~~gL~~~~l~~~--~~~LSGGekQRv~LAraL~~--~p~~p~lLILDEPTsGLD~~~~~~l~-~lL~~L~~~G~ 899 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLGQP--ATTLSGGEAQRVKLAAELHR--RSNGRTLYILDEPTTGLHVDDIARLL-DVLHRLVDNGD 899 (972)
T ss_dssp HHHHHHHTTCSSSBTTCC--GGGCCHHHHHHHHHHHHHSS--CCCSCEEEEEECTTTTCCHHHHHHHH-HHHHHHHHTTC
T ss_pred HHHHHHHcCCCcccccCc--hhhCCHHHHHHHHHHHHHhc--CCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCC
Confidence 357888999986 32232 24566664 4899999997 6 49999999999 9999999999 99999987888
Q ss_pred eEEEE
Q 025844 132 NVCAV 136 (247)
Q Consensus 132 ~ii~v 136 (247)
+|+++
T Consensus 900 TVIvi 904 (972)
T 2r6f_A 900 TVLVI 904 (972)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88776
No 74
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.55 E-value=1.9e-14 Score=124.54 Aligned_cols=102 Identities=22% Similarity=0.195 Sum_probs=70.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCC-CceEEEeccCCCCCCCCCCcc-cChhhhHhHHHHHHHcCCCCCCchhhhHHh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVA-MDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~-~G~v~i~g~d~~~~~~~y~~~-~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~ 80 (247)
-+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. + .+. ... +. + ..+++.+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~--~--~~~~~~~---v~--q--~~~gl~~---------- 84 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY--V--FKHKKSI---VN--Q--REVGEDT---------- 84 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCS--C--CCCSSSE---EE--E--EEBTTTB----------
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCccee--e--cCCccee---ee--H--HHhCCCH----------
Confidence 468999999999999999999999998 9999999876421 1 111 000 00 0 1233322
Q ss_pred hhhhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 81 l~~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
..++.++++++.. +|+++++|||+ |+.+.... ++.. +.|.+++++
T Consensus 85 --~~l~~~la~aL~~--~p~illlDEp~--D~~~~~~~----l~~~-~~g~~vl~t 129 (261)
T 2eyu_A 85 --KSFADALRAALRE--DPDVIFVGEMR--DLETVETA----LRAA-ETGHLVFGT 129 (261)
T ss_dssp --SCHHHHHHHHHHH--CCSEEEESCCC--SHHHHHHH----HHHH-HTTCEEEEE
T ss_pred --HHHHHHHHHHHhh--CCCEEEeCCCC--CHHHHHHH----HHHH-ccCCEEEEE
Confidence 1245899999999 99999999999 87765433 3433 457777555
No 75
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.54 E-value=2.7e-14 Score=127.50 Aligned_cols=100 Identities=20% Similarity=0.200 Sum_probs=67.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~ 82 (247)
-.++|+||||||||||+++|+|+++|++|.|.+.|.+. +...+ .++.+. +-. + ..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e----~~~~~---~~~~i~---------~~~-g--------gg 226 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE----IVFKH---HKNYTQ---------LFF-G--------GN 226 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC----CCCSS---CSSEEE---------EEC-B--------TT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec----ccccc---chhEEE---------EEe-C--------CC
Confidence 36899999999999999999999999999999998542 11110 001000 000 0 11
Q ss_pred hhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 83 ~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
..++..|++++.. +|+++++|||++- .+. ++++.+...+.+++++
T Consensus 227 ~~~r~~la~aL~~--~p~ilildE~~~~------e~~-~~l~~~~~g~~tvi~t 271 (330)
T 2pt7_A 227 ITSADCLKSCLRM--RPDRIILGELRSS------EAY-DFYNVLCSGHKGTLTT 271 (330)
T ss_dssp BCHHHHHHHHTTS--CCSEEEECCCCST------HHH-HHHHHHHTTCCCEEEE
T ss_pred hhHHHHHHHHhhh--CCCEEEEcCCChH------HHH-HHHHHHhcCCCEEEEE
Confidence 2355899999999 9999999999982 234 5667775434455444
No 76
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.53 E-value=1.4e-15 Score=128.62 Aligned_cols=123 Identities=15% Similarity=0.135 Sum_probs=68.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHH--hCCcCCCceEEEeccCCCC------CCCCCCc-------ccChhhhHhHHHHH---H
Q 025844 3 YAQLVIGPAGSGKSTYCSSLY--RHCETVRRTMHIVNLDPAA------ENFDYPV-------AMDIRELISLEDVM---E 64 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~--g~l~~~~G~v~i~g~d~~~------~~~~y~~-------~~~v~e~i~~~~~l---~ 64 (247)
-+++|+||||||||||+++++ |..++.+|.+++.+.++.. +.+++.+ .+++.+........ +
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLPSEE 110 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC------------
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccccccccccc
Confidence 478999999999999999999 6656667777777654321 1233311 01111111110000 0
Q ss_pred Hc-CCCCCCchhhhHHhhhhhHHHHHHHHh-hcCCCCCEEEEeCCCc-cc-----HHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 65 EL-GLGPNGGLIYCMEHLEDNLDDWLAEEL-DNYLDDDYLVFDCPGQ-IE-----LFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 65 ~~-~L~~~~~~~~~~~~l~~~~~~~la~al-~~~~~p~~lilDEPt~-LD-----~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
.. .+.+. .+ ......+...+ .. +|+++++|||++ +| +..+..+. ++++.+++.|.+++++
T Consensus 111 ~~~~~~~~--------~~-~~~~~~~~~~l~~~--~p~~lilDep~~~ld~~~d~~~~~~~l~-~l~~~l~~~g~tii~v 178 (251)
T 2ehv_A 111 KFVLEDRF--------NV-DNFLRYIYRVVKAI--NAKRLVIDSIPSIALRLEEERKIREVLL-KLNTILLEMGVTTILT 178 (251)
T ss_dssp -------C--------CH-HHHHHHHHHHHHHT--TCSEEEEECHHHHHHHSSSGGGHHHHHH-HHHHHHHHHCCEEEEE
T ss_pred ceeccCcc--------cH-HHHHHHHHHHHHhh--CCCEEEEccHHHHHhhcCCHHHHHHHHH-HHHHHHHHCCCeEEEE
Confidence 00 00000 00 11112222222 24 999999999999 86 44444455 8999987778888776
Q ss_pred E
Q 025844 137 Y 137 (247)
Q Consensus 137 ~ 137 (247)
.
T Consensus 179 t 179 (251)
T 2ehv_A 179 T 179 (251)
T ss_dssp E
T ss_pred E
Confidence 3
No 77
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.51 E-value=4.6e-14 Score=140.64 Aligned_cols=72 Identities=21% Similarity=0.253 Sum_probs=57.0
Q ss_pred HHHHHHcCCCC-CCchhhhHHhhhhhH--HHHHHHHhhcCCC---CCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCe
Q 025844 60 EDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLD---DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN 132 (247)
Q Consensus 60 ~~~l~~~~L~~-~~~~~~~~~~l~~~~--~~~la~al~~~~~---p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ 132 (247)
.++++.+||+. ..+.. ...+++|. ++.||++|+. + |+++||||||+ ||+.....+. ++++++.+.|.+
T Consensus 844 ~~~L~~lgL~~~~l~~~--~~~LSGGekQRv~LAraL~~--~p~~p~lLILDEPTsGLD~~~~~~l~-~lL~~L~~~G~T 918 (993)
T 2ygr_A 844 LRTLVDVGLGYVRLGQP--APTLSGGEAQRVKLASELQK--RSTGRTVYILDEPTTGLHFDDIRKLL-NVINGLVDKGNT 918 (993)
T ss_dssp HHHHHHTTGGGSBTTCC--GGGSCHHHHHHHHHHHHHSS--CCCSSEEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCE
T ss_pred HHHHHHcCCCcccccCc--cccCCHHHHHHHHHHHHHHh--CCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCE
Confidence 46788888876 22222 24566664 4899999997 6 49999999999 9999999999 999999877888
Q ss_pred EEEE
Q 025844 133 VCAV 136 (247)
Q Consensus 133 ii~v 136 (247)
|++|
T Consensus 919 VIvi 922 (993)
T 2ygr_A 919 VIVI 922 (993)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8776
No 78
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.50 E-value=1.3e-13 Score=122.37 Aligned_cols=54 Identities=9% Similarity=0.095 Sum_probs=43.4
Q ss_pred HhhhhhHH--HHHHHHhh----cCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 79 EHLEDNLD--DWLAEELD----NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 79 ~~l~~~~~--~~la~al~----~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
..++.|++ ++||++++ . +|+++||||||+ ||+.....+. ++++++. .+.+++++
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~--~~~~lllDEp~~~LD~~~~~~l~-~~l~~~~-~~~~vi~~ 278 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIK--PSPFYVLDEVDSPLDDYNAERFK-RLLKENS-KHTQFIVI 278 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTS--CCSEEEEESCCSSCCHHHHHHHH-HHHHHHT-TTSEEEEE
T ss_pred hhCCHHHHHHHHHHHHHHHhccC--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHhc-CCCeEEEE
Confidence 35666654 88899886 5 789999999999 9999999988 8888884 46677655
No 79
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.48 E-value=9.7e-16 Score=127.48 Aligned_cols=58 Identities=5% Similarity=-0.050 Sum_probs=44.1
Q ss_pred HhhcCCCCCEEEEeCCCc-c----cHHhHHHHHHHHHHHHHh-CCCeEEEEEecccccccchhHHhhhhHH
Q 025844 92 ELDNYLDDDYLVFDCPGQ-I----ELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMA 156 (247)
Q Consensus 92 al~~~~~p~~lilDEPt~-L----D~~~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~ 156 (247)
+++. +|+++++|||++ + |+..++.+. ++++++++ .|.+++++ +|.+.+...+++.++.
T Consensus 137 ~l~~--~p~~~~LDep~~~l~~~~d~~~~~~l~-~~l~~l~~~~g~tvi~v----tHdl~~~~~~~d~i~~ 200 (207)
T 1znw_A 137 VFLA--PPSWQDLQARLIGRGTETADVIQRRLD-TARIELAAQGDFDKVVV----NRRLESACAELVSLLV 200 (207)
T ss_dssp EEEE--CSCHHHHHHHHHTTSCSCHHHHHHHHH-HHHHHHHGGGGSSEEEE----CSSHHHHHHHHHHHHC
T ss_pred EEEE--CCCHHHHHHHHHhcCCCCHHHHHHHHH-HHHHHHhhhccCcEEEE----CCCHHHHHHHHHHHHH
Confidence 4556 899999999987 7 777888887 88888864 47888665 5777777777776544
No 80
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.44 E-value=3.6e-13 Score=112.29 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=29.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC-------CCceEEEeccC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET-------VRRTMHIVNLD 39 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-------~~G~v~i~g~d 39 (247)
-+++|+||||||||||++.++|...+ .+|.+++.+.+
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 47899999999999999999996555 44466766654
No 81
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.43 E-value=2e-13 Score=120.62 Aligned_cols=128 Identities=16% Similarity=0.129 Sum_probs=77.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-------------CCCCC-Cc------ccChhhhHhHHHH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDY-PV------AMDIRELISLEDV 62 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-------------~~~~y-~~------~~~v~e~i~~~~~ 62 (247)
.+++|+|||||||||+++.|+|+++|++|+|.+.|.|+.. ..++| ++ ..++.+++.....
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~~ 182 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMKA 182 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999988632 12444 22 2234455432111
Q ss_pred -------HHHcCCCCCCchhhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHh-CCCeEE
Q 025844 63 -------MEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVC 134 (247)
Q Consensus 63 -------l~~~~L~~~~~~~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~-~~~~ii 134 (247)
++..|..+.. ...++.++ .++..+||+++. +|+.+++ .||+.+....+ +.++.+.+ .+.+++
T Consensus 183 ~~~d~~llDt~G~~~~~--~~~~~eLs-~~r~~iaRal~~--~P~~~lL----vLDa~t~~~~~-~~~~~~~~~~~~t~i 252 (304)
T 1rj9_A 183 RGYDLLFVDTAGRLHTK--HNLMEELK-KVKRAIAKADPE--EPKEVWL----VLDAVTGQNGL-EQAKKFHEAVGLTGV 252 (304)
T ss_dssp HTCSEEEECCCCCCTTC--HHHHHHHH-HHHHHHHHHCTT--CCSEEEE----EEETTBCTHHH-HHHHHHHHHHCCSEE
T ss_pred CCCCEEEecCCCCCCch--HHHHHHHH-HHHHHHHHhhcC--CCCeEEE----EEcHHHHHHHH-HHHHHHHHHcCCcEE
Confidence 0111222221 11133343 345899999999 9994333 34444444444 44555543 377776
Q ss_pred EEEecc
Q 025844 135 AVYLLD 140 (247)
Q Consensus 135 ~v~l~d 140 (247)
++.-.|
T Consensus 253 ivTh~d 258 (304)
T 1rj9_A 253 IVTKLD 258 (304)
T ss_dssp EEECTT
T ss_pred EEECCc
Confidence 664334
No 82
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.41 E-value=5.7e-13 Score=120.10 Aligned_cols=103 Identities=18% Similarity=0.183 Sum_probs=63.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCC-CceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~-~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l 81 (247)
-+++|+||||||||||+++++|+++++ +|.|...+ |+.... ....... + .+...+..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e-d~~e~~--~~~~~~~---v------~q~~~~~~---------- 181 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE-DPIEFV--HESKKCL---V------NQREVHRD---------- 181 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE-SSCCSC--CCCSSSE---E------EEEEBTTT----------
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc-CcHHhh--hhccccc---e------eeeeeccc----------
Confidence 368999999999999999999999987 56665544 432111 1000000 0 00001110
Q ss_pred hhhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 82 ~~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
...+..+|+++|.. +|+++++|||+ |..+. +.+.++...|.+++++
T Consensus 182 ~~~~~~~La~aL~~--~PdvillDEp~--d~e~~-----~~~~~~~~~G~~vl~t 227 (356)
T 3jvv_A 182 TLGFSEALRSALRE--DPDIILVGEMR--DLETI-----RLALTAAETGHLVFGT 227 (356)
T ss_dssp BSCHHHHHHHHTTS--CCSEEEESCCC--SHHHH-----HHHHHHHHTTCEEEEE
T ss_pred cCCHHHHHHHHhhh--CcCEEecCCCC--CHHHH-----HHHHHHHhcCCEEEEE
Confidence 01133588999999 99999999999 54443 3333445668887655
No 83
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.39 E-value=8.2e-13 Score=104.77 Aligned_cols=98 Identities=11% Similarity=0.080 Sum_probs=65.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCc--eEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G--~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l 81 (247)
.++|+||||||||||++++++.+.+ .| .+++.+.+....
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~-------------------------------------- 78 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT-------------------------------------- 78 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC--------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH--------------------------------------
Confidence 5789999999999999999999887 46 555554332111
Q ss_pred hhhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCe-EEEEEecccccccchhHHhhh
Q 025844 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFN-VCAVYLLDSQFITDVTKFISG 153 (247)
Q Consensus 82 ~~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~-ii~v~l~d~~~~~d~~~~~s~ 153 (247)
++.. +|++|++|||+.++......++ ++++.+.+.|.+ ++++.-.....+.....+.|+
T Consensus 79 ----------~~~~--~~~lLilDE~~~~~~~~~~~l~-~li~~~~~~g~~~iiits~~~p~~l~~~~~L~SR 138 (149)
T 2kjq_A 79 ----------DAAF--EAEYLAVDQVEKLGNEEQALLF-SIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTR 138 (149)
T ss_dssp ----------GGGG--GCSEEEEESTTCCCSHHHHHHH-HHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHHH
T ss_pred ----------HHHh--CCCEEEEeCccccChHHHHHHH-HHHHHHHHcCCcEEEEECCCCHHHccccHHHHHH
Confidence 1234 7999999999996666666666 888888766666 655543233323322444443
No 84
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.38 E-value=3.8e-13 Score=134.32 Aligned_cols=107 Identities=13% Similarity=0.156 Sum_probs=66.8
Q ss_pred eEEEEEcCCCCcHHHHHHHH--------HhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCch
Q 025844 3 YAQLVIGPAGSGKSTYCSSL--------YRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGL 74 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l--------~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~ 74 (247)
-+++|+||||||||||+|.+ .|..-|..+.. + +.. ++++.++|+..+...
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-~----------~~~-----------d~i~~~ig~~d~l~~ 720 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-V----------SIV-----------DCILARVGAGDSQLK 720 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-E----------ECC-----------SEEEEECC-------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-c----------hHH-----------HHHHHhcCchhhHHH
Confidence 46899999999999999999 56544433211 0 000 011112222221111
Q ss_pred hhhHHhhhhhHHHHHHHHh--hcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 025844 75 IYCMEHLEDNLDDWLAEEL--DNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV 136 (247)
Q Consensus 75 ~~~~~~l~~~~~~~la~al--~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v 136 (247)
. ...++.++ ..+++++ +. +|+++||||||+ +|+.....+...+++.+.+ .|.+++++
T Consensus 721 ~--lStf~~e~-~~~a~il~~a~--~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~a 781 (934)
T 3thx_A 721 G--VSTFMAEM-LETASILRSAT--KDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFA 781 (934)
T ss_dssp ----CHHHHHH-HHHHHHHHHCC--TTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred h--HhhhHHHH-HHHHHHHHhcc--CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 1 22344444 5666666 56 999999999999 9999988886588888876 47777665
No 85
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.37 E-value=1.9e-12 Score=117.01 Aligned_cols=55 Identities=9% Similarity=0.028 Sum_probs=46.4
Q ss_pred HhhhhhHH--HHHHHHhh------cCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 79 EHLEDNLD--DWLAEELD------NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 79 ~~l~~~~~--~~la~al~------~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
..+++|++ ++||++++ . +|+++||||||+ ||+.+...++ ++++++++.|.++++|
T Consensus 278 ~~LSgGe~qr~~la~al~~~~~~~~--~p~~lllDEpt~~LD~~~~~~~~-~~l~~l~~~g~tvi~i 341 (365)
T 3qf7_A 278 RGLSGGERALISISLAMSLAEVASG--RLDAFFIDEGFSSLDTENKEKIA-SVLKELERLNKVIVFI 341 (365)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTT--TCCEEEEESCCTTSCHHHHHHHH-HHHHGGGGSSSEEEEE
T ss_pred hhCCHHHHHHHHHHHHHHhhhcccC--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 34666654 78888888 7 999999999999 9999999998 8899987778888766
No 86
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.37 E-value=3.2e-14 Score=126.17 Aligned_cols=105 Identities=13% Similarity=0.003 Sum_probs=66.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCc--eEEEeccCCCC------CCCCCCc--cc-ChhhhHhHHHHHHHcCCCCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDPAA------ENFDYPV--AM-DIRELISLEDVMEELGLGPN 71 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G--~v~i~g~d~~~------~~~~y~~--~~-~v~e~i~~~~~l~~~~L~~~ 71 (247)
.+++|+||||||||||+++|+|+++|..| .+.+..+|..- +++.+.. .. .-.+.-.+.+.++.++ ...
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~~~ 169 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK-SGS 169 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-TTC
T ss_pred EEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-CCc
Confidence 68999999999999999999999999876 46555544311 1111100 00 0001112566777776 322
Q ss_pred CchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccH
Q 025844 72 GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IEL 112 (247)
Q Consensus 72 ~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~ 112 (247)
..... ..++.+++ +.+|++++. +|+++|+|||+. +|+
T Consensus 170 ~~~~~--~~lS~G~~qRv~~a~al~~--~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 170 DYACA--PVYSHLHYDIIPGAEQVVR--HPDILILEGLNVLQTG 209 (312)
T ss_dssp SCEEE--EEEETTTTEEEEEEEEEEC--SCSEEEEECTTTTCCC
T ss_pred ccCCc--ccCChhhhhhhhhHHHhcc--CCCEEEECCccccCCc
Confidence 21221 24555543 667788888 999999999998 764
No 87
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.37 E-value=1e-12 Score=109.35 Aligned_cols=126 Identities=13% Similarity=0.178 Sum_probs=70.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCC-------CCCCCc-ccChhhhHh-HHHHHHHcCCCCCCc
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-------NFDYPV-AMDIRELIS-LEDVMEELGLGPNGG 73 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~-------~~~y~~-~~~v~e~i~-~~~~l~~~~L~~~~~ 73 (247)
-+++|+||||||||||++.+++...+.+|.+.+.+.+...+ .+++.. ...- +.+. ++......+ .....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~ 101 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIE-KKLIIIDALMKEKE-DQWSL 101 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBT-TTEEEEECCC-----CTTBC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhh-CCEEEEeccccccC-ceeee
Confidence 46899999999999999999998888889998887654211 011100 0000 0000 000000000 00000
Q ss_pred hhhhHHhhhhhHHHHHHHHhhcCCCCC--EEEEeCCCc-c--cHHhHHHHHHHHHHHHH-hCCCeEEEE
Q 025844 74 LIYCMEHLEDNLDDWLAEELDNYLDDD--YLVFDCPGQ-I--ELFTHVPVLRNFVDHLK-SRNFNVCAV 136 (247)
Q Consensus 74 ~~~~~~~l~~~~~~~la~al~~~~~p~--~lilDEPt~-L--D~~~~~~~~~~ll~~l~-~~~~~ii~v 136 (247)
.......+ .+...+..... +|+ ++++|||++ + |+...+.++ +.++.+. +.|.+++++
T Consensus 102 ~~~~~~~~---~~~~~~~~~~~--~~~~~llilDe~~~~~~~d~~~~~~~~-~~l~~~~~~~~~~vi~~ 164 (235)
T 2w0m_A 102 VNLTPEEL---VNKVIEAKQKL--GYGKARLVIDSVSALFLDKPAMARKIS-YYLKRVLNKWNFTIYAT 164 (235)
T ss_dssp SSCCHHHH---HHHHHHHHHHH--CSSCEEEEEETGGGGSSSCGGGHHHHH-HHHHHHHHHTTEEEEEE
T ss_pred cCCCHHHH---HHHHHHHHHhh--CCCceEEEEECchHhhcCCHHHHHHHH-HHHHHHHHhCCCeEEEE
Confidence 00001111 11222222234 899 999999998 7 998888888 6677764 457777766
No 88
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.36 E-value=3.4e-13 Score=127.26 Aligned_cols=121 Identities=15% Similarity=0.057 Sum_probs=78.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCce-EEEeccCCCCCCCCC--CcccChhhhHhHHHHHHHcCCCCCCchhhhHH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRT-MHIVNLDPAAENFDY--PVAMDIRELISLEDVMEELGLGPNGGLIYCME 79 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~-v~i~g~d~~~~~~~y--~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~ 79 (247)
-+++|+||||||||||++.++|...+.++. +++.+.++..+-... ...++ ++++. ..|+....... ..
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~------~~~~~-~~g~~~~~~~~--p~ 352 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMD------FEEME-RQNLLKIVCAY--PE 352 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCC------HHHHH-HTTSEEECCCC--GG
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCC------HHHHH-hCCCEEEEEec--cc
Confidence 468999999999999999999999886443 455554431100000 00011 22222 22221111111 11
Q ss_pred hhhhh--HHHHHHHHhhcCCCCCEEEEeCCCc-ccHH-----hHHHHHHHHHHHHHhCCCeEEEE
Q 025844 80 HLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELF-----THVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 80 ~l~~~--~~~~la~al~~~~~p~~lilDEPt~-LD~~-----~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
.++.+ +++.+|+++.. +|+++|+| |++ ||.. .+..+. ++++.+++.|.+++++
T Consensus 353 ~LS~g~~q~~~~a~~l~~--~p~llilD-p~~~Ld~~~~~~~~~~~i~-~ll~~l~~~g~tvilv 413 (525)
T 1tf7_A 353 SAGLEDHLQIIKSEINDF--KPARIAID-SLSALARGVSNNAFRQFVI-GVTGYAKQEEITGLFT 413 (525)
T ss_dssp GSCHHHHHHHHHHHHHTT--CCSEEEEE-CHHHHTSSSCHHHHHHHHH-HHHHHHHHTTCEEEEE
T ss_pred cCCHHHHHHHHHHHHHhh--CCCEEEEc-ChHHHHhhCChHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 23333 44788888888 99999999 999 9998 887777 8999998888888776
No 89
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.34 E-value=5.1e-13 Score=134.67 Aligned_cols=114 Identities=17% Similarity=0.127 Sum_probs=70.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCC--CceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETV--RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~--~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~ 80 (247)
-+++|+||||||||||+|.+ |++.+. -|.. -|+. ...+++.+.+ +.++|+..+... ....
T Consensus 790 ~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~~-----Vpq~-----~~~l~v~d~I-----~~rig~~d~~~~--~~st 851 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGCY-----VPAE-----VCRLTPIDRV-----FTRLGASDRIMS--GEST 851 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHH-HHHHHHHTTTCC-----EESS-----EEEECCCSBE-----EEECC-----------CH
T ss_pred cEEEEECCCCCChHHHHHHH-HHHHHHhheeEE-----eccC-----cCCCCHHHHH-----HHHcCCHHHHhh--chhh
Confidence 47899999999999999999 987642 1210 0110 0123333332 112333322111 1123
Q ss_pred hhhhHH-HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025844 81 LEDNLD-DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (247)
Q Consensus 81 l~~~~~-~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v 136 (247)
++.+++ ++++++++. +|+++|+||||+ +|+.....+...+++.+.+. |.+++++
T Consensus 852 f~~em~~~a~al~la~--~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~ 908 (1022)
T 2o8b_B 852 FFVELSETASILMHAT--AHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFS 908 (1022)
T ss_dssp HHHHHHHHHHHHHHCC--TTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEE
T ss_pred hHHHHHHHHHHHHhCC--CCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 444443 677888888 999999999999 99988655444899999765 7777655
No 90
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.33 E-value=1.2e-12 Score=114.17 Aligned_cols=127 Identities=10% Similarity=0.094 Sum_probs=69.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCc-eEEEeccCCCCCCC-----CCCc--ccChhhhHh------------HHHH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAENF-----DYPV--AMDIRELIS------------LEDV 62 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G-~v~i~g~d~~~~~~-----~y~~--~~~v~e~i~------------~~~~ 62 (247)
-+++|+||||||||||++.++|.+.+.+| .|.+.+.+.....+ .+.+ .....+.+. ++++
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 115 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDEL 115 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHTHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHHHHHH
Confidence 36899999999999999999999998877 78776654321100 0000 111111111 1222
Q ss_pred HHHcCC--CCC-CchhhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCc-cc------H-HhHHHHHHHHHHHHHh-CC
Q 025844 63 MEELGL--GPN-GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IE------L-FTHVPVLRNFVDHLKS-RN 130 (247)
Q Consensus 63 l~~~~L--~~~-~~~~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~-LD------~-~~~~~~~~~ll~~l~~-~~ 130 (247)
++..++ ... ... ....+ .+...++++.. +|+++|+|||+. ++ . .....++ +.++.+++ .|
T Consensus 116 l~~~~l~i~~~~~~~--~~~~l---~~~~~a~~~~~--~p~llilDept~~~~~~~~~d~~~~~~~i~-~~L~~la~~~~ 187 (296)
T 1cr0_A 116 FGNDTFHLYDSFAEA--ETDRL---LAKLAYMRSGL--GCDVIILDHISIVVSASGESDERKMIDNLM-TKLKGFAKSTG 187 (296)
T ss_dssp HSSSCEEEECCCCSC--CHHHH---HHHHHHHHHTT--CCSEEEEEEEC-----------CHHHHHHH-HHHHHHHHHHC
T ss_pred hccCCEEEECCCCCC--CHHHH---HHHHHHHHHhc--CCCEEEEcCccccCCCCCCCCHHHHHHHHH-HHHHHHHHHhC
Confidence 222222 111 101 11112 11222555667 999999999998 43 3 3445556 66777754 48
Q ss_pred CeEEEEE
Q 025844 131 FNVCAVY 137 (247)
Q Consensus 131 ~~ii~v~ 137 (247)
.+|+++.
T Consensus 188 ~~vi~vs 194 (296)
T 1cr0_A 188 VVLVVIC 194 (296)
T ss_dssp CEEEEEE
T ss_pred CeEEEEE
Confidence 8887763
No 91
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.32 E-value=3.1e-13 Score=127.50 Aligned_cols=126 Identities=13% Similarity=0.135 Sum_probs=77.0
Q ss_pred eEEEEEcCCCCcHHHHHHH--HHhCCcCCCceEEEeccCCCC------CCCCC-CcccChhhhHhHHHHHHHcCCCCCCc
Q 025844 3 YAQLVIGPAGSGKSTYCSS--LYRHCETVRRTMHIVNLDPAA------ENFDY-PVAMDIRELISLEDVMEELGLGPNGG 73 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~--l~g~l~~~~G~v~i~g~d~~~------~~~~y-~~~~~v~e~i~~~~~l~~~~L~~~~~ 73 (247)
-+++|+||||||||||+++ ++|+++|.+|.|++.|.+... +.++| +++....+++ ..+...+...
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l------~~~~~~~~~~ 113 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKL------FILDASPDPE 113 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSE------EEEECCCCSS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcE------EEEecCcccc
Confidence 3689999999999999999 789999999999999876421 22333 1111000000 0001100000
Q ss_pred hhhhHHhh-hhhHHHHHHHHhhcCCCCCEEEEeCCCc------ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 74 LIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ------IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 74 ~~~~~~~l-~~~~~~~la~al~~~~~p~~lilDEPt~------LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
....++.+ ...+...+..++... +|+.+++|||++ +|+..++.+. ++++.+++.|.+++++
T Consensus 114 ~~~~l~~~~l~~~~~~~~~~LS~g-~~~~lilDe~t~~~~~~~lD~~~~~~l~-~ll~~l~~~g~tvl~i 181 (525)
T 1tf7_A 114 GQEVVGGFDLSALIERINYAIQKY-RARRVSIDSVTSVFQQYDASSVVRRELF-RLVARLKQIGATTVMT 181 (525)
T ss_dssp CCSCCSSHHHHHHHHHHHHHHHHH-TCSEEEEECSTTTSTTTCCHHHHHHHHH-HHHHHHHHHTCEEEEE
T ss_pred hhhhhcccCHHHHHHHHHHHHHHc-CCCEEEECCHHHHHHhcCCHHHHHHHHH-HHHHHHHHCCCEEEEE
Confidence 00000000 011224455566422 899999999986 3788888888 9999998778888776
No 92
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.30 E-value=1e-12 Score=130.90 Aligned_cols=113 Identities=12% Similarity=0.139 Sum_probs=63.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC-CCceEEEeccCCCC-CCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAA-ENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-~~G~v~i~g~d~~~-~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~ 80 (247)
-+++|+||||||||||+|+++++.-. ..|. .-|+. ..++.. ++++..+|+..+.... ...
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~-----~vpa~~~~i~~~-----------d~i~~~ig~~d~l~~~--~st 735 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVALITIMAQIGS-----YVPAEEATIGIV-----------DGIFTRMGAADNIYKG--RST 735 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHHHHHHHHTC-----CBSSSEEEEECC-----------SEEEEEC------------CC
T ss_pred eEEEEECCCCCchHHHHHHHHHHHHHhhcCc-----cccchhhhhhHH-----------HHHHHhCChHHHHHHh--HHH
Confidence 36899999999999999999764211 1110 00110 001110 0011112222111111 122
Q ss_pred hhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 025844 81 LEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV 136 (247)
Q Consensus 81 l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v 136 (247)
++.++. ..++++ +. +|+++||||||+ +|+.....+...+++.+.+ .|.+++++
T Consensus 736 fs~em~~~~~il~~-a~--~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~v 792 (918)
T 3thx_B 736 FMEELTDTAEIIRK-AT--SQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFV 792 (918)
T ss_dssp HHHHHHHHHHHHHH-CC--TTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred hhHHHHHHHHHHHh-cc--CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 334442 344444 55 999999999999 9999998887688888865 57777666
No 93
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.28 E-value=1.1e-11 Score=112.39 Aligned_cols=116 Identities=19% Similarity=0.167 Sum_probs=72.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCC-CceEEEeccCCCCCCCCCCcccC-hhhhHhHHHHHHHcCCCCCCchhhhHHh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVAMD-IRELISLEDVMEELGLGPNGGLIYCMEH 80 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~-~G~v~i~g~d~~~~~~~y~~~~~-v~e~i~~~~~l~~~~L~~~~~~~~~~~~ 80 (247)
-+++|+|||||||||++++|+|+++|+ +|.|.+.+.+... .+..... +.+ ..+|+.+.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~---~~~~~~~~v~Q--------~~~g~~~~--------- 196 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY---VFKHKKSIVNQ--------REVGEDTK--------- 196 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCS---CCCCSSSEEEE--------EEBTTTBS---------
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhh---hhccCceEEEe--------eecCCCHH---------
Confidence 468999999999999999999999997 8999887754321 1110000 000 01233221
Q ss_pred hhhhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhhhhH
Q 025844 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (247)
Q Consensus 81 l~~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l 155 (247)
.++..+++++.. +|+++++|||+ |..... ..++.. ..|..++.+ +|. .+...+++.++
T Consensus 197 ---~~~~~l~~~L~~--~pd~illdE~~--d~e~~~----~~l~~~-~~g~~vi~t----~H~-~~~~~~~~rl~ 254 (372)
T 2ewv_A 197 ---SFADALRAALRE--DPDVIFVGEMR--DLETVE----TALRAA-ETGHLVFGT----LHT-NTAIDTIHRIV 254 (372)
T ss_dssp ---CSHHHHHHHTTS--CCSEEEESCCC--SHHHHH----HHHHHH-TTTCEEEEC----CCC-CSHHHHHHHHH
T ss_pred ---HHHHHHHHHhhh--CcCEEEECCCC--CHHHHH----HHHHHH-hcCCEEEEE----ECc-chHHHHHHHHH
Confidence 124788889988 99999999999 554432 334443 457666433 333 33555555543
No 94
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.28 E-value=2e-12 Score=126.78 Aligned_cols=104 Identities=14% Similarity=0.153 Sum_probs=63.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCc-CCCceEEEeccCCC-CCCCCC----CcccChhhhHhHHHHHHHcCCCCCCchhhh
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIVNLDPA-AENFDY----PVAMDIRELISLEDVMEELGLGPNGGLIYC 77 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~-~~~G~v~i~g~d~~-~~~~~y----~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~ 77 (247)
+++|+||||||||||+|+++|+.. ++.|.+. |+ ...+++ ...+++.|++.. ++ .
T Consensus 578 i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v-----pa~~~~i~~v~~i~~~~~~~d~l~~-------g~--S------ 637 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTALIALLAQVGSFV-----PAEEAHLPLFDGIYTRIGASDDLAG-------GK--S------ 637 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB-----SSSEEEECCCSEEEEECCC-------------CC--S------
T ss_pred EEEEECCCCCChHHHHHHHHhhhhhcccCcee-----ehhccceeeHHHhhccCCHHHHHHh-------cc--c------
Confidence 689999999999999999999874 6777642 21 122333 123344443311 11 0
Q ss_pred HHhhhhhHHHHHHHHh--hcCCCCCEEEEeCC---Cc-ccHHhHH-HHHHHHHHHHHhCCCeEEEE
Q 025844 78 MEHLEDNLDDWLAEEL--DNYLDDDYLVFDCP---GQ-IELFTHV-PVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 78 ~~~l~~~~~~~la~al--~~~~~p~~lilDEP---t~-LD~~~~~-~~~~~ll~~l~~~~~~ii~v 136 (247)
.+...+ ..+++++ +. +|+++|+||| |+ +|..+.. .+. +.+. +.|.+++++
T Consensus 638 --~~~~e~-~~la~il~~a~--~p~LlLLDEpgrGTs~lD~~~~~~~i~-~~L~---~~g~~vl~~ 694 (765)
T 1ewq_A 638 --TFMVEM-EEVALILKEAT--ENSLVLLDEVGRGTSSLDGVAIATAVA-EALH---ERRAYTLFA 694 (765)
T ss_dssp --HHHHHH-HHHHHHHHHCC--TTEEEEEESTTTTSCHHHHHHHHHHHH-HHHH---HHTCEEEEE
T ss_pred --HHHHHH-HHHHHHHHhcc--CCCEEEEECCCCCCCCcCHHHHHHHHH-HHHH---hCCCEEEEE
Confidence 111222 5667777 66 9999999999 88 9988753 344 4333 346677655
No 95
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.28 E-value=1.1e-11 Score=110.65 Aligned_cols=145 Identities=17% Similarity=0.165 Sum_probs=86.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC-----------CCCC--C-------CcccChhhhHhHHH
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFD--Y-------PVAMDIRELISLED 61 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~-----------~~~~--y-------~~~~~v~e~i~~~~ 61 (247)
..+++++|||||||||+++.|+|+++|++|+|.+.|.|+.. +.++ + .+..++++++....
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~ 208 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAK 208 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999988632 1111 2 22334555543211
Q ss_pred H-------HHHcCCCCCCchhhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHH-hCCCeE
Q 025844 62 V-------MEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNV 133 (247)
Q Consensus 62 ~-------l~~~~L~~~~~~~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~-~~~~~i 133 (247)
. ++..|..+.. ..+...+ ..+++++.. ++.++++|.++..| .+ +.++.+. +.+.+.
T Consensus 209 ~~~~d~vliDtaG~~~~~------~~l~~eL-~~i~ral~~--de~llvLDa~t~~~------~~-~~~~~~~~~~~it~ 272 (328)
T 3e70_C 209 ARGIDVVLIDTAGRSETN------RNLMDEM-KKIARVTKP--NLVIFVGDALAGNA------IV-EQARQFNEAVKIDG 272 (328)
T ss_dssp HHTCSEEEEEECCSCCTT------TCHHHHH-HHHHHHHCC--SEEEEEEEGGGTTH------HH-HHHHHHHHHSCCCE
T ss_pred hccchhhHHhhccchhHH------HHHHHHH-HHHHHHhcC--CCCEEEEecHHHHH------HH-HHHHHHHHhcCCCE
Confidence 1 0011121111 1223334 457788877 77788888766543 33 4445554 357777
Q ss_pred EEEEecccccccchhHHhhhhHHHhHHHhhccCCeeee
Q 025844 134 CAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNI 171 (247)
Q Consensus 134 i~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~v 171 (247)
+++.-+|...-. . ...+.....+.|..-+
T Consensus 273 iilTKlD~~a~~--G-------~~l~~~~~~~~pi~~i 301 (328)
T 3e70_C 273 IILTKLDADARG--G-------AALSISYVIDAPILFV 301 (328)
T ss_dssp EEEECGGGCSCC--H-------HHHHHHHHHTCCEEEE
T ss_pred EEEeCcCCccch--h-------HHHHHHHHHCCCEEEE
Confidence 766545542211 1 1234555667887644
No 96
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.27 E-value=2.4e-11 Score=108.49 Aligned_cols=55 Identities=13% Similarity=0.122 Sum_probs=44.2
Q ss_pred HhhhhhHH--------HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 79 EHLEDNLD--------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 79 ~~l~~~~~--------~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
..+++|++ +++|++++. +|+++||||||+ ||+..+..+. ++++.+.+.+.+++++
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~--~p~~lllDEp~~~LD~~~~~~l~-~~l~~~~~~~~~vi~~ 310 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAG--EISLLILDEPTPYLDEERRRKLI-TIMERYLKKIPQVILV 310 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTT--TTCEEEEECCCTTCCHHHHHHHH-HHHHHTGGGSSEEEEE
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcC--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEE
Confidence 34666653 467778877 999999999999 9999999998 8888876667777666
No 97
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.27 E-value=1.4e-13 Score=113.52 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=31.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~ 40 (247)
+++|+||||||||||++.|+|+++ ++| |.++|.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~ 37 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYT 37 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEEC
T ss_pred EEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEec
Confidence 579999999999999999999999 889 98888654
No 98
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.25 E-value=6.6e-12 Score=101.53 Aligned_cols=97 Identities=15% Similarity=0.193 Sum_probs=62.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCce-EEEeccCCCCCCCCCCcccChhhhHh-HHHHHHHcCCCCCCchhhhHHh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRT-MHIVNLDPAAENFDYPVAMDIRELIS-LEDVMEELGLGPNGGLIYCMEH 80 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~-v~i~g~d~~~~~~~y~~~~~v~e~i~-~~~~l~~~~L~~~~~~~~~~~~ 80 (247)
.+++|+||||||||||++++++.+.+..|. +.+ ++..+.+. +........ .
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~---------------~~~~~~~~~~~~~~~~~~---~--------- 91 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF---------------FDTKDLIFRLKHLMDEGK---D--------- 91 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE---------------EEHHHHHHHHHHHHHHTC---C---------
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE---------------EEHHHHHHHHHHHhcCch---H---------
Confidence 468999999999999999999998765552 221 12222211 111111100 0
Q ss_pred hhhhHHHHHHHHhhcCCCCCEEEEeCCC-c-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 81 LEDNLDDWLAEELDNYLDDDYLVFDCPG-Q-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 81 l~~~~~~~la~al~~~~~p~~lilDEPt-~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
. ..+ .... +|++|++|||+ . +|+..+..+. ++++...+++.+++++
T Consensus 92 --~---~~~--~~~~--~~~llilDE~~~~~~~~~~~~~l~-~ll~~~~~~~~~ii~t 139 (180)
T 3ec2_A 92 --T---KFL--KTVL--NSPVLVLDDLGSERLSDWQRELIS-YIITYRYNNLKSTIIT 139 (180)
T ss_dssp --S---HHH--HHHH--TCSEEEEETCSSSCCCHHHHHHHH-HHHHHHHHTTCEEEEE
T ss_pred --H---HHH--HHhc--CCCEEEEeCCCCCcCCHHHHHHHH-HHHHHHHHcCCCEEEE
Confidence 0 111 1223 89999999998 3 9998887777 8888876677777665
No 99
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.24 E-value=8.8e-12 Score=107.99 Aligned_cols=126 Identities=13% Similarity=0.102 Sum_probs=73.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC-CCCCCC-CcccChhh-------------hHhHHHHHHHcC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-AENFDY-PVAMDIRE-------------LISLEDVMEELG 67 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~-~~~~~y-~~~~~v~e-------------~i~~~~~l~~~~ 67 (247)
-+++|+||||||||||++.+++.+.. |.++ .|.++. ...+.| ....+..+ ....+++++.++
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~~--g~~~-~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~l~ 107 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIAG--GPDL-LEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADGLL 107 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHT--CCCT-TCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHHEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhc--CCCc-CCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccCceE
Confidence 36899999999999999999986653 3221 122221 011111 00001100 011344567776
Q ss_pred CCCCCchhhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCc---ccHHhH---HHHHHHHHHHHH-hCCCeEEEEE
Q 025844 68 LGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ---IELFTH---VPVLRNFVDHLK-SRNFNVCAVY 137 (247)
Q Consensus 68 L~~~~~~~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~---LD~~~~---~~~~~~ll~~l~-~~~~~ii~v~ 137 (247)
+.+..... ...++.+. ...+++++. +|+++++|||++ +|.... ..++ +.+..+. +.|.++++++
T Consensus 108 l~~~~~~~--~~~ls~g~-~~~i~~l~~--~~~livlDe~~~~~~~d~~~~~~~~~~~-~~L~~l~~~~g~tvi~i~ 178 (279)
T 1nlf_A 108 IQPLIGSL--PNIMAPEW-FDGLKRAAE--GRRLMVLDTLRRFHIEEENASGPMAQVI-GRMEAIAADTGCSIVFLH 178 (279)
T ss_dssp ECCCTTSC--CCTTSHHH-HHHHHHHHT--TCSEEEEECGGGGCCSCTTCHHHHHHHH-HHHHHHHHHHCCEEEEEE
T ss_pred EeecCCCC--cccCCHHH-HHHHHHhcC--CCCEEEECCHHHhcCCCcCchHHHHHHH-HHHHHHHHHcCCEEEEEe
Confidence 65543222 12344454 555678888 999999999997 565433 5666 6666664 4588888774
No 100
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.24 E-value=6.4e-12 Score=112.90 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=31.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC--cCCC----ce-EEEeccCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVR----RT-MHIVNLDP 40 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l--~~~~----G~-v~i~g~d~ 40 (247)
-+++|+||||||||||++.+++.. +|+. |+ +++++.+.
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence 478999999999999999999998 5554 67 77777543
No 101
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.20 E-value=7.1e-13 Score=111.29 Aligned_cols=111 Identities=14% Similarity=0.100 Sum_probs=66.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC--------CCCCCC-CcccCh----------------hhh-
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------AENFDY-PVAMDI----------------REL- 56 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~--------~~~~~y-~~~~~v----------------~e~- 56 (247)
-+++|+||||||||||+++|+|++ | |++.+ |.+.. ...+.| +++... ..+
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 99 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNF 99 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhccccc
Confidence 468999999999999999999998 5 89988 65431 123333 111110 010
Q ss_pred -----HhHHHHHHHcCCCCCCchhhhHHhhhhhHH--HHH-----HHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 025844 57 -----ISLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWL-----AEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (247)
Q Consensus 57 -----i~~~~~l~~~~L~~~~~~~~~~~~l~~~~~--~~l-----a~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (247)
-.++++++.....-. . ..++++++ +++ +++++. .|++++||||++ +|..+...+. +.+
T Consensus 100 ~g~~~~~i~~~l~~~~~~il-----~-~~lsggq~qR~~i~~~~~~~~ll~--~~~~~~Lde~~~~~d~~~~~~i~-~~l 170 (218)
T 1z6g_A 100 YGTLKSEYDKAKEQNKICLF-----E-MNINGVKQLKKSTHIKNALYIFIK--PPSTDVLLSRLLTRNTENQEQIQ-KRM 170 (218)
T ss_dssp EEEEHHHHHHHHHTTCEEEE-----E-ECHHHHHHHTTCSSCCSCEEEEEE--CSCHHHHHHHHHHTCCCCHHHHH-HHH
T ss_pred CCCcHHHHHHHHhCCCcEEE-----E-ecHHHHHHHHHHhcCCCcEEEEEe--CcCHHHHHHHHHhcCCCCHHHHH-HHH
Confidence 114445544221100 0 11233333 555 556666 899999999998 9988777766 444
Q ss_pred HHH
Q 025844 124 DHL 126 (247)
Q Consensus 124 ~~l 126 (247)
..+
T Consensus 171 ~~~ 173 (218)
T 1z6g_A 171 EQL 173 (218)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 102
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.16 E-value=1.4e-11 Score=121.49 Aligned_cols=109 Identities=13% Similarity=0.097 Sum_probs=62.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc-CCCceEEEeccCCCC-CCCCC----CcccChhhhHhHHHHHHHcCCCCCCchhh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIVNLDPAA-ENFDY----PVAMDIRELISLEDVMEELGLGPNGGLIY 76 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~-~~~G~v~i~g~d~~~-~~~~y----~~~~~v~e~i~~~~~l~~~~L~~~~~~~~ 76 (247)
-+++|+||||||||||+|+++|+.. ...|.. -|+. ..+++ ...+++.+++.. ++
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~-----vpa~~~~i~~~~~i~~~~~~~d~l~~-------~~-------- 667 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALIALMAYIGSY-----VPAQKVEIGPIDRIFTRVGAADDLAS-------GR-------- 667 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC-----BSSSEEEECCCCEEEEEEC------------------------
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHhcCcc-----cchhcccceeHHHHHhhCCHHHHHHh-------hh--------
Confidence 3689999999999999999999742 223311 0111 11222 112233332210 11
Q ss_pred hHHhhhhhHHHHHHHH--hhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 025844 77 CMEHLEDNLDDWLAEE--LDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV 136 (247)
Q Consensus 77 ~~~~l~~~~~~~la~a--l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v 136 (247)
..++.++ ..++.+ .+. +|+++|+|||++ +|+.....+...+++.+.+ .|.+++++
T Consensus 668 --stf~~e~-~~~~~il~~a~--~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~ 726 (800)
T 1wb9_A 668 --STFMVEM-TETANILHNAT--EYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFA 726 (800)
T ss_dssp ----CHHHH-HHHHHHHHHCC--TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred --hhhhHHH-HHHHHHHHhcc--CCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEE
Confidence 1122233 222333 355 999999999988 8887766664488888876 47777655
No 103
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.14 E-value=1e-12 Score=108.79 Aligned_cols=121 Identities=11% Similarity=0.073 Sum_probs=72.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhh-------------HhHHHHHHHcCC
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIREL-------------ISLEDVMEELGL 68 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~-------------i~~~~~l~~~~L 68 (247)
..+++|+||||||||||+++|+|++.| .+.+...|+..... ..+++.++ -.+.+.++.+++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHYYKDL---GHLPLEERLRVNYDHPDAFDLALYLEHAQALLR 79 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGCBCCC---TTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCccccCc---ccccHHHhcCCCCCChhhhhHHHHHHHHHHHHc
Confidence 368999999999999999999999876 46666555422111 11122211 125566777766
Q ss_pred CCCCchhhhHHhhhhh------HHHHHHHHhhcCCCCCEEEEeCCCc--------ccHHhHHHHHHHHHHH-HHhCCCeE
Q 025844 69 GPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ--------IELFTHVPVLRNFVDH-LKSRNFNV 133 (247)
Q Consensus 69 ~~~~~~~~~~~~l~~~------~~~~la~al~~~~~p~~lilDEPt~--------LD~~~~~~~~~~ll~~-l~~~~~~i 133 (247)
+...... . ..++.+ +++.++++++. +|.++++|||++ ||+.....+. +.+++ .++.|.++
T Consensus 80 ~~~~~~~-~-~~~s~g~~~~~~~~~~~~~~li~--~~~ll~~de~~~~~~d~~i~ld~~~~~~~~-r~l~r~~~~~g~t~ 154 (211)
T 3asz_A 80 GLPVEMP-V-YDFRAYTRSPRRTPVRPAPVVIL--EGILVLYPKELRDLMDLKVFVDADADERFI-RRLKRDVLERGRSL 154 (211)
T ss_dssp TCCEEEC-C-EETTTTEECSSCEEECCCSEEEE--ESTTTTSSHHHHTTCSEEEEEECCHHHHHH-HHHHHHHHHSCCCH
T ss_pred CCCcCCC-c-ccCcccCCCCCeEEeCCCcEEEE--eehhhccCHHHHHhcCEEEEEeCCHHHHHH-HHHHHHHHHhCCCH
Confidence 5432111 0 011111 11345666777 888888899975 6888777777 55554 34457665
No 104
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.11 E-value=1.4e-11 Score=103.70 Aligned_cols=113 Identities=15% Similarity=0.164 Sum_probs=66.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC--CCceEEEeccCCCC---CCCCC-CcccChhhhHhHH-HHHHHcCCCCCCchh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPAA---ENFDY-PVAMDIRELISLE-DVMEELGLGPNGGLI 75 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~--~~G~v~i~g~d~~~---~~~~y-~~~~~v~e~i~~~-~~l~~~~L~~~~~~~ 75 (247)
-+++|+||||||||||+++|+|.++| ..|.|.+.+.++.. ..+.| +++....+...+. ++++...+..+ .
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~---~ 93 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGN---Y 93 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTE---E
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhc---c
Confidence 47899999999999999999999986 67889888876643 23455 2222111111110 00111111100 0
Q ss_pred hhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 76 YCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 76 ~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
+ .... ..+ ..++. .++++||| +|+.+...+. +.+. .+.+|+++
T Consensus 94 y-----g~~~-~~v-~~~l~--~G~illLD----LD~~~~~~i~-~~l~----~~~tI~i~ 136 (219)
T 1s96_A 94 Y-----GTSR-EAI-EQVLA--TGVDVFLD----IDWQGAQQIR-QKMP----HARSIFIL 136 (219)
T ss_dssp E-----EEEH-HHH-HHHHT--TTCEEEEE----CCHHHHHHHH-HHCT----TCEEEEEE
T ss_pred C-----CCCH-HHH-HHHHh--cCCeEEEE----ECHHHHHHHH-HHcc----CCEEEEEE
Confidence 0 0011 222 33445 68999999 9999987776 4433 46666544
No 105
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.10 E-value=5.8e-10 Score=92.09 Aligned_cols=116 Identities=14% Similarity=0.069 Sum_probs=62.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhh-----HhHHHHHHHcCCCCCCchhhh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIREL-----ISLEDVMEELGLGPNGGLIYC 77 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~-----i~~~~~l~~~~L~~~~~~~~~ 77 (247)
-+++|+||||||||||++.+++ + .++.+.+...+.. +. + ..+.+. +..+++++.+.+....
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v~~i~~~~~---~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 86 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL--L-SGKKVAYVDTEGG---FS--P-ERLVQMAETRGLNPEEALSRFILFTPS----- 86 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH--H-HCSEEEEEESSCC---CC--H-HHHHHHHHTTTCCHHHHHHHEEEECCT-----
T ss_pred EEEEEECCCCCCHHHHHHHHHH--H-cCCcEEEEECCCC---CC--H-HHHHHHHHhcCCChHHHhhcEEEEecC-----
Confidence 4689999999999999999999 3 3455555443221 00 0 001110 0012233322221110
Q ss_pred HHhhhhhH--HHHHHHHhhcCCCCCEEEEeCCCc-ccHHhH--------HHHHHHHHHHHHh-CCCeEEEEE
Q 025844 78 MEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTH--------VPVLRNFVDHLKS-RNFNVCAVY 137 (247)
Q Consensus 78 ~~~l~~~~--~~~la~al~~~~~p~~lilDEPt~-LD~~~~--------~~~~~~ll~~l~~-~~~~ii~v~ 137 (247)
-...+ ....++++... +|+++++|||++ +|+... ..++ +.++.+.+ .+.++++++
T Consensus 87 ---~~~~~~~~~~~~~~l~~~-~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~-~~L~~l~~~~~~~vi~~~ 153 (220)
T 2cvh_A 87 ---DFKEQRRVIGSLKKTVDS-NFALVVVDSITAHYRAEENRSGLIAELSRQL-QVLLWIARKHNIPVIVIN 153 (220)
T ss_dssp ---TTSHHHHHHHHHHHHCCT-TEEEEEEECCCCCTTGGGGSSTTHHHHHHHH-HHHHHHHHHHTCCEEEEE
T ss_pred ---CHHHHHHHHHHHHHHhhc-CCCEEEEcCcHHHhhhcCchHHHHHHHHHHH-HHHHHHHHHcCCEEEEEe
Confidence 00111 14456677761 399999999999 887432 2233 33555543 477877664
No 106
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.10 E-value=4.2e-11 Score=110.66 Aligned_cols=141 Identities=9% Similarity=0.005 Sum_probs=83.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC---CCC------------CCCCC-Cc-------ccChhhhHh-
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD---PAA------------ENFDY-PV-------AMDIRELIS- 58 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d---~~~------------~~~~y-~~-------~~~v~e~i~- 58 (247)
-+++|+||||||||||+++|+|+.+|+.|.|.++|.+ ... ..+.| ++ .+++.+++.
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~ 237 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATR 237 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999973 211 11223 22 223333332
Q ss_pred HHHHHHHcCCCCC-CchhhhHHhhhhhHH-HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh---C-CC
Q 025844 59 LEDVMEELGLGPN-GGLIYCMEHLEDNLD-DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS---R-NF 131 (247)
Q Consensus 59 ~~~~l~~~~L~~~-~~~~~~~~~l~~~~~-~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~---~-~~ 131 (247)
..+.... -+.. .........++.+++ +++| +. +|++ ++ +|+..+..+. ++++++.+ . |.
T Consensus 238 ~ae~~~~--~~~~v~~~ld~l~~lS~g~qrvslA---l~--~p~~------t~glD~~~~~~l~-~ll~r~~~~~~~~Gs 303 (438)
T 2dpy_A 238 IAEDFRD--RGQHVLLIMDSLTRYAMAQREIALA---IG--EPPA------TKGYPPSVFAKLP-ALVERAGNGIHGGGS 303 (438)
T ss_dssp HHHHHHT--TTCEEEEEEECHHHHHHHHHHHHHH---TT--CCCC------SSSCCTTHHHHHH-HHHTTCSCCSTTSCE
T ss_pred HHHHHHh--CCCCHHHHHHhHHHHHHHHHHHHHH---hC--CCcc------cccCCHHHHHHHH-HHHHHHHhccCCCCc
Confidence 1222221 1110 001112344555552 4444 55 7877 87 9999998888 88888755 2 42
Q ss_pred -eEEEEEecccccccchhHHhhhhHHHhH
Q 025844 132 -NVCAVYLLDSQFITDVTKFISGCMASLS 159 (247)
Q Consensus 132 -~ii~v~l~d~~~~~d~~~~~s~~l~~~~ 159 (247)
|.+.+.++.+|.+. ..+++..+....
T Consensus 304 iT~~~tVlv~tHdl~--~~iad~v~~l~d 330 (438)
T 2dpy_A 304 ITAFYTVLTEGDDQQ--DPIADSARAILD 330 (438)
T ss_dssp EEEEEEEECSSSCSC--CHHHHHHHHHSS
T ss_pred ccceeEEEEeCCCcc--chhhceEEEEeC
Confidence 22333356677776 344555544433
No 107
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.09 E-value=6.1e-10 Score=93.37 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=29.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh--CCcC-----CCceEEEeccC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYR--HCET-----VRRTMHIVNLD 39 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g--~l~~-----~~G~v~i~g~d 39 (247)
-+++|+||||||||||++.+++ ..++ ..|.+++.+.+
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 4689999999999999999999 5554 45667776654
No 108
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.08 E-value=1.5e-10 Score=103.95 Aligned_cols=144 Identities=10% Similarity=0.055 Sum_probs=84.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC--C---C---------CCC-C-cccChhhhHh-------H
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--E---N---------FDY-P-VAMDIRELIS-------L 59 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~--~---~---------~~y-~-~~~~v~e~i~-------~ 59 (247)
-+++|+||||||||||+++|+|+.+|+.|.+.+.|.+... + . +.+ . .+....+.+. +
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ 151 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDRPALERMKAAFTATTI 151 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999998865311 0 0 001 0 0111222222 1
Q ss_pred HHHHHHcCCCCCC-chhhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh--CCC-eEE
Q 025844 60 EDVMEELGLGPNG-GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS--RNF-NVC 134 (247)
Q Consensus 60 ~~~l~~~~L~~~~-~~~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~--~~~-~ii 134 (247)
.+..... +.+- ........++.++ ..++.+ +. +|++ +. +|+..+..+. ++++++.+ .|. |.+
T Consensus 152 ae~~~~~--~~~vl~~ld~~~~lS~g~-r~v~la-l~--~p~~------t~Gldp~~~~~l~-~ller~~~~~~GsiT~~ 218 (347)
T 2obl_A 152 AEYFRDQ--GKNVLLMMDSVTRYARAA-RDVGLA-SG--EPDV------RGGFPPSVFSSLP-KLLERAGPAPKGSITAI 218 (347)
T ss_dssp HHHHHTT--TCEEEEEEETHHHHHHHH-HHHHHH-TT--CCCC------BTTBCHHHHHHHH-HHHTTCEECSSSEEEEE
T ss_pred HHHHHhc--cccHHHHHhhHHHHHHHH-HHHHHH-cC--CCCc------ccCCCHHHHHHHH-HHHHHHhCCCCCCeeeE
Confidence 2221111 1100 0001234556666 333333 34 6765 77 9999999988 88888864 353 333
Q ss_pred EEEecccccccchhHHhhhhHHHhHHH
Q 025844 135 AVYLLDSQFITDVTKFISGCMASLSAM 161 (247)
Q Consensus 135 ~v~l~d~~~~~d~~~~~s~~l~~~~~~ 161 (247)
.+-++.+|.+. ..+++.......+.
T Consensus 219 ~tVl~~thdl~--~~i~d~v~~i~dG~ 243 (347)
T 2obl_A 219 YTVLLESDNVN--DPIGDEVRSILDGH 243 (347)
T ss_dssp EEEECCSSCCC--CHHHHHHHHHCSEE
T ss_pred EEEEEeCCCCC--ChhhhheEEeeCcE
Confidence 34467778877 44566665554443
No 109
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.07 E-value=5.3e-12 Score=107.35 Aligned_cols=37 Identities=24% Similarity=0.431 Sum_probs=33.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH---hCCcCCCceEEEeccC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLY---RHCETVRRTMHIVNLD 39 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~---g~l~~~~G~v~i~g~d 39 (247)
.+++|+|||||||||+++.|+ |+..++.|++.+.+.+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~ 67 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIK 67 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHh
Confidence 578999999999999999999 9999999998887653
No 110
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.06 E-value=3.7e-10 Score=100.23 Aligned_cols=116 Identities=13% Similarity=0.222 Sum_probs=58.8
Q ss_pred EEEEcCCCCcHHHHHHHHHh-CCcCCCceEEEeccCCCC-----CCCCCCcc-----cC-----hhhhHhHHHHHHHcCC
Q 025844 5 QLVIGPAGSGKSTYCSSLYR-HCETVRRTMHIVNLDPAA-----ENFDYPVA-----MD-----IRELISLEDVMEELGL 68 (247)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g-~l~~~~G~v~i~g~d~~~-----~~~~y~~~-----~~-----v~e~i~~~~~l~~~~L 68 (247)
+.|.||||+||||+++++++ ++.+..|.+.+.|.+... ..+.+.+. ++ ..+...+++.++.+.-
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 118 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQ 118 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----CCHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHH
Confidence 78999999999999999999 789999999888754321 11111000 00 0000012333332211
Q ss_pred CCCCchhhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 69 GPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 69 ~~~~~~~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
.... .... .+ ..+.. +|+++|+|||+++|..+...+. +.+++.. .+.++|++
T Consensus 119 ~~~~------~~~~-~l-----s~l~~--~~~vlilDE~~~L~~~~~~~L~-~~le~~~-~~~~~Il~ 170 (354)
T 1sxj_E 119 MEQV------DFQD-SK-----DGLAH--RYKCVIINEANSLTKDAQAALR-RTMEKYS-KNIRLIMV 170 (354)
T ss_dssp TTC--------------------------CCEEEEEECTTSSCHHHHHHHH-HHHHHST-TTEEEEEE
T ss_pred hccc------cccc-cc-----cccCC--CCeEEEEeCccccCHHHHHHHH-HHHHhhc-CCCEEEEE
Confidence 1000 0000 00 01345 8999999999999998887777 7766653 34455444
No 111
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.06 E-value=6e-11 Score=106.79 Aligned_cols=128 Identities=9% Similarity=0.020 Sum_probs=67.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCC----ceEEEeccCCCCCCCCCCcccChhhhHhH--HH-H---HH---HcCCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVR----RTMHIVNLDPAAENFDYPVAMDIRELISL--ED-V---ME---ELGLG 69 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~----G~v~i~g~d~~~~~~~y~~~~~v~e~i~~--~~-~---l~---~~~L~ 69 (247)
-.++|+||||||||||+++|+|+++|+. |++++.+..... ...+.+ .+. +.+.. .+ . .. .+-+.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~-~~~~~~-~~~-~~I~~~~q~~~~~~~t~~~nl~~~ 247 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGD-EQAMQY-SDY-PQMALGHQRYIDYAVRHSHKIAFI 247 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSC-TTSSCT-TTH-HHHHHHHHHHHHHHHHHCSSEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCC-cccCCh-hHH-HHHHHHHHHHHHHHHhccCCEEEE
Confidence 4679999999999999999999999998 888764321111 111111 011 11210 00 0 01 01111
Q ss_pred CCCc-hhhhHHhhh-hhHHHHHHHHhh-cCCCCCEEEEeC---CC------c-ccHHhHHHHHHHHHHHHH-hCCCeEEE
Q 025844 70 PNGG-LIYCMEHLE-DNLDDWLAEELD-NYLDDDYLVFDC---PG------Q-IELFTHVPVLRNFVDHLK-SRNFNVCA 135 (247)
Q Consensus 70 ~~~~-~~~~~~~l~-~~~~~~la~al~-~~~~p~~lilDE---Pt------~-LD~~~~~~~~~~ll~~l~-~~~~~ii~ 135 (247)
.... ......... .+++..+++++. . +|+++++|| |+ . +|...+..+. +.+.++. +.+.++++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~-~~l~~l~~~~~~~ili 324 (365)
T 1lw7_A 248 DTDFITTQAFCIQYEGKAHPFLDSMIKEY--PFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQ-QLLKKLLDKYKVPYIE 324 (365)
T ss_dssp SSCHHHHHHHHHHHHSCCCHHHHHHHHHS--CCSEEEEEECCCC-----------CCSHHHHH-HHHHHHHHGGGCCCEE
T ss_pred eCCchHHHHHHHHHcCCCCHHHHHHHhhc--CCCEEEECCCCCCcccCCCcCCccHHHHHHHH-HHHHHHHHHcCCCEEE
Confidence 1100 000000111 112255555543 5 899999999 64 4 7888888888 6666654 34777765
Q ss_pred E
Q 025844 136 V 136 (247)
Q Consensus 136 v 136 (247)
+
T Consensus 325 l 325 (365)
T 1lw7_A 325 I 325 (365)
T ss_dssp E
T ss_pred e
Confidence 5
No 112
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.03 E-value=4.8e-10 Score=98.99 Aligned_cols=91 Identities=22% Similarity=0.299 Sum_probs=63.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l 81 (247)
+.+++|+|||||||||+++.|++++.+.+|+|.+.+.|+... ...+. +..+.+..++...... ..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~--------~a~eq--L~~~~~~~gl~~~~~~-----s~ 168 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA--------AAIEQ--LKIWGERVGATVISHS-----EG 168 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH--------HHHHH--HHHHHHHHTCEEECCS-----TT
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH--------HHHHH--HHHHHHHcCCcEEecC-----Cc
Confidence 357899999999999999999999999999999998876321 01111 3456666665421100 00
Q ss_pred hhhHH---HHHHHHhhcCCCCCEEEEeCCCc
Q 025844 82 EDNLD---DWLAEELDNYLDDDYLVFDCPGQ 109 (247)
Q Consensus 82 ~~~~~---~~la~al~~~~~p~~lilDEPt~ 109 (247)
....+ .++++++.. +|+++|+|||+.
T Consensus 169 ~~~~~v~~~al~~a~~~--~~dvvIiDtpg~ 197 (306)
T 1vma_A 169 ADPAAVAFDAVAHALAR--NKDVVIIDTAGR 197 (306)
T ss_dssp CCHHHHHHHHHHHHHHT--TCSEEEEEECCC
T ss_pred cCHHHHHHHHHHHHHhc--CCCEEEEECCCc
Confidence 00011 367778888 999999999986
No 113
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.02 E-value=1.5e-09 Score=95.19 Aligned_cols=107 Identities=17% Similarity=0.079 Sum_probs=71.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCC--chhhhHHh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNG--GLIYCMEH 80 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~--~~~~~~~~ 80 (247)
.+++++|+||+||||+++.+++++.+.+|+|.+.+.|+.... .. + ....+.+..++.... ....+. .
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~-------~~-~--ql~~~~~~~~l~~~~~~~~~~p~-~ 167 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA-------AR-E--QLRLLGEKVGVPVLEVMDGESPE-S 167 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHH-------HH-H--HHHHHHHHHTCCEEECCTTCCHH-H
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHh-------HH-H--HHHHhcccCCeEEEEcCCCCCHH-H
Confidence 578899999999999999999999999999999998874311 01 1 122344555553211 000001 1
Q ss_pred hhhhHHHHHHHHhhcCCCCCEEEEeCC-Cc-ccHHhHHHHHHHHHHHH
Q 025844 81 LEDNLDDWLAEELDNYLDDDYLVFDCP-GQ-IELFTHVPVLRNFVDHL 126 (247)
Q Consensus 81 l~~~~~~~la~al~~~~~p~~lilDEP-t~-LD~~~~~~~~~~ll~~l 126 (247)
+ ++.+++.+... +++++|+||| +. +|......+. .+.+.+
T Consensus 168 l---~~~~l~~~~~~--~~D~viiDtpp~~~~d~~~~~~l~-~~~~~~ 209 (295)
T 1ls1_A 168 I---RRRVEEKARLE--ARDLILVDTAGRLQIDEPLMGELA-RLKEVL 209 (295)
T ss_dssp H---HHHHHHHHHHH--TCCEEEEECCCCSSCCHHHHHHHH-HHHHHH
T ss_pred H---HHHHHHHHHhC--CCCEEEEeCCCCccccHHHHHHHH-HHhhhc
Confidence 1 23567766667 8999999999 55 8877766665 665555
No 114
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.02 E-value=2.2e-10 Score=105.30 Aligned_cols=126 Identities=15% Similarity=0.225 Sum_probs=61.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCc--eEEEeccCC-C-------CCCCCCCcccChhhhHhHHHHHHHcCCCCCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDP-A-------AENFDYPVAMDIRELISLEDVMEELGLGPNG 72 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G--~v~i~g~d~-~-------~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~ 72 (247)
+-++|+||||||||||+++|+|...+..| .+.+.+... . .+.....+.+++.|++........ ....
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~---~~~~ 108 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN---SNCW 108 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC--------------C
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccc---hhhH
Confidence 55799999999999999999999875443 111111000 0 011111234455555543221110 0000
Q ss_pred chhhhHHhhhhhH------HHHHHHHhhcCCCCC---EEEEeCCC-c-ccHHhHHHHHHHHHHHHHhCCCeEEEE-Eecc
Q 025844 73 GLIYCMEHLEDNL------DDWLAEELDNYLDDD---YLVFDCPG-Q-IELFTHVPVLRNFVDHLKSRNFNVCAV-YLLD 140 (247)
Q Consensus 73 ~~~~~~~~l~~~~------~~~la~al~~~~~p~---~lilDEPt-~-LD~~~~~~~~~~ll~~l~~~~~~ii~v-~l~d 140 (247)
....+++...+ ++.|+++++. +|+ ++++|||| . +|+... .+++.+.. +.+++.| +=.|
T Consensus 109 --~~i~~~i~~~~~~~l~qr~~IaRal~~--d~~~~vlL~ldePt~~~L~~~d~-----~~lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 109 --QPVIDYIDSKFEDYLNAESRVNRRQMP--DNRVQCCLYFIAPSGHGLKPLDI-----EFMKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp --HHHHHHHHHHHHHHTTTSCC-CCCCCC--CC-CCEEEEECCC-CCSCCHHHH-----HHHHHHTT-TSEEEEEEESTT
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCeeEEEEEecCcccCCCHHHH-----HHHHHHhc-cCcEEEEEEccc
Confidence 00001111111 1457778777 999 99999998 5 988652 44556644 5665554 4455
Q ss_pred c
Q 025844 141 S 141 (247)
Q Consensus 141 ~ 141 (247)
.
T Consensus 179 l 179 (418)
T 2qag_C 179 T 179 (418)
T ss_dssp S
T ss_pred C
Confidence 4
No 115
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.98 E-value=1.5e-10 Score=92.66 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=34.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~ 40 (247)
-+++|+||||||||||+|+|+|++ |++|+|.+.|.++
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i 70 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTL 70 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEee
Confidence 478999999999999999999999 9999999988765
No 116
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.96 E-value=3.1e-11 Score=106.55 Aligned_cols=98 Identities=17% Similarity=0.095 Sum_probs=63.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEec-cCCC------C-CCCCCCcccChhhhHhHHHHHHHcCCCCCCch
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN-LDPA------A-ENFDYPVAMDIRELISLEDVMEELGLGPNGGL 74 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g-~d~~------~-~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~ 74 (247)
-+++|+||||||||||+++|+|++ +|+|...+ .++. . +++.+.++.+ + .+.+.++.+ + +.+-.
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v~q~~~lf~~ti~~~ni~~~~~~~--~--~~~~~i~~~-L-~~gld 197 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFANHKSHFWLASLADTRAALVDDAT--H--ACWRYFDTY-L-RNALD 197 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH---TCEEECGGGTTSGGGGGGGTTCSCEEEEEEC--H--HHHHHHHHT-T-TGGGG
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc---CceEEEEecCccccccccHHHHhhccCcccc--H--HHHHHHHHH-h-HccCC
Confidence 478999999999999999999998 79997543 2211 0 1232221111 1 245556553 2 11111
Q ss_pred hhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHH
Q 025844 75 IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (247)
Q Consensus 75 ~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~ 119 (247)
...+++|++.. ||+++. +|++|| |+ ||+.+...+.
T Consensus 198 ---g~~LSgGqkQR-ARAll~--~p~iLl----Ts~LD~~~~~~i~ 233 (305)
T 2v9p_A 198 ---GYPVSIDRKHK-AAVQIK--APPLLV----TSNIDVQAEDRYL 233 (305)
T ss_dssp ---TCCEECCCSSC-CCCEEC--CCCEEE----EESSCSTTCGGGG
T ss_pred ---ccCcCHHHHHH-HHHHhC--CCCEEE----ECCCCHHHHHHHH
Confidence 12466665444 999999 999999 88 9998876654
No 117
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.93 E-value=4e-09 Score=96.34 Aligned_cols=119 Identities=17% Similarity=0.167 Sum_probs=61.4
Q ss_pred eEEEEEcCCCCcHHHHHHHH--HhCCcCCC-----ceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCC----
Q 025844 3 YAQLVIGPAGSGKSTYCSSL--YRHCETVR-----RTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPN---- 71 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l--~g~l~~~~-----G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~---- 71 (247)
-+++|+||||||||||++.+ .+..+++. +.+++.+.+... ...+.++.+.+++.+.
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~-------------~~rl~~~a~~~gl~~~~vle 245 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFR-------------PVRLVSIAQRFGLDPDDALN 245 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCC-------------HHHHHHHHHHTTCCHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccC-------------HHHHHHHHHHcCCChHhHhh
Confidence 36899999999999999954 56666533 356666543210 1112333444444321
Q ss_pred -Cch--hhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHHhH------------HHHHHHHHHHHHh-CCCeEE
Q 025844 72 -GGL--IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTH------------VPVLRNFVDHLKS-RNFNVC 134 (247)
Q Consensus 72 -~~~--~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~-LD~~~~------------~~~~~~ll~~l~~-~~~~ii 134 (247)
... ....+....-. ..+...+... +|+++++|+|+. ++.... ..++ +.++.+.+ .+.+++
T Consensus 246 ni~~~~~~~~~~~~~~l-~~~~~~l~~~-~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il-~~L~~lake~gitVI 322 (400)
T 3lda_A 246 NVAYARAYNADHQLRLL-DAAAQMMSES-RFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFM-RALQRLADQFGVAVV 322 (400)
T ss_dssp TEEEEECCSHHHHHHHH-HHHHHHHHHS-CEEEEEEETGGGGCC------CCHHHHHHHHHHHH-HHHHHHHHHHCCEEE
T ss_pred cEEEeccCChHHHHHHH-HHHHHHHHhc-CCceEEecchhhhCchhhcCccchHHHHHHHHHHH-HHHHHHHHHcCCEEE
Confidence 000 00000000001 1111222222 799999999998 775322 3445 55555554 488888
Q ss_pred EEE
Q 025844 135 AVY 137 (247)
Q Consensus 135 ~v~ 137 (247)
++.
T Consensus 323 lv~ 325 (400)
T 3lda_A 323 VTN 325 (400)
T ss_dssp EEE
T ss_pred EEE
Confidence 774
No 118
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.92 E-value=4.8e-10 Score=91.91 Aligned_cols=124 Identities=11% Similarity=-0.022 Sum_probs=66.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC-----cCCCceEEEecc----------CC-CCCC--------------CC-CCc--
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC-----ETVRRTMHIVNL----------DP-AAEN--------------FD-YPV-- 49 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l-----~~~~G~v~i~g~----------d~-~~~~--------------~~-y~~-- 49 (247)
+.++|+|+||||||||++.++|.. .|+.|.+...+. |. .... +. |.+
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKR 106 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999988 777776654220 11 0000 00 000
Q ss_pred ----------ccCh--hh-hHhHHHHHHHcCCCCCCchhhhHHhhhhhHH---HHHHHHhhcCCCCCEEEEeCCCc-ccH
Q 025844 50 ----------AMDI--RE-LISLEDVMEELGLGPNGGLIYCMEHLEDNLD---DWLAEELDNYLDDDYLVFDCPGQ-IEL 112 (247)
Q Consensus 50 ----------~~~v--~e-~i~~~~~l~~~~L~~~~~~~~~~~~l~~~~~---~~la~al~~~~~p~~lilDEPt~-LD~ 112 (247)
+.+. .. ...+.++++..++....- ....+.++.+.+ ...+++++. +|..++.|||++ +|.
T Consensus 107 ~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v-~nK~D~~s~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sal~~ 183 (210)
T 1pui_A 107 QSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVL-LTKADKLASGARKAQLNMVREAVL--AFNGDVQVETFSSLKK 183 (210)
T ss_dssp TTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEE-EECGGGSCHHHHHHHHHHHHHHHG--GGCSCEEEEECBTTTT
T ss_pred hcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEE-EecccCCCchhHHHHHHHHHHHHH--hcCCCCceEEEeecCC
Confidence 0000 00 011334555555432110 011233444322 456777777 888889999999 999
Q ss_pred HhHHHHHHHHHHHHHhCC
Q 025844 113 FTHVPVLRNFVDHLKSRN 130 (247)
Q Consensus 113 ~~~~~~~~~ll~~l~~~~ 130 (247)
.+...++ +.+.++.+++
T Consensus 184 ~~~~~l~-~~l~~~~~~~ 200 (210)
T 1pui_A 184 QGVDKLR-QKLDTWFSEM 200 (210)
T ss_dssp BSHHHHH-HHHHHHHC--
T ss_pred CCHHHHH-HHHHHHHhhc
Confidence 9999998 6666654444
No 119
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.90 E-value=9.1e-09 Score=92.63 Aligned_cols=99 Identities=16% Similarity=0.149 Sum_probs=60.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCC-CCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFD-YPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~-y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l 81 (247)
-.++|+||||||||||+++|+|+++|++|.|.+.|.... ..+ ....+. .+...+. .++. ..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~--~~~~~~~~v~---~v~~q~~----~~~~---------~~ 237 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPEL--FLPDHPNHVH---LFYPSEA----KEEE---------NA 237 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCC--CCTTCSSEEE---EECC----------------------
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcccc--CccccCCEEE---EeecCcc----cccc---------cc
Confidence 368999999999999999999999999999999874210 011 000000 0000000 0000 01
Q ss_pred hhhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHh
Q 025844 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS 128 (247)
Q Consensus 82 ~~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~ 128 (247)
....+..++.++.. .|+.+++|||..- ... ++++.+..
T Consensus 238 ~~t~~~~i~~~l~~--~pd~~l~~e~r~~------~~~-~~l~~l~~ 275 (361)
T 2gza_A 238 PVTAATLLRSCLRM--KPTRILLAELRGG------EAY-DFINVAAS 275 (361)
T ss_dssp -CCHHHHHHHHTTS--CCSEEEESCCCST------HHH-HHHHHHHT
T ss_pred ccCHHHHHHHHHhc--CCCEEEEcCchHH------HHH-HHHHHHhc
Confidence 11234677778877 9999999999852 223 45666643
No 120
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.87 E-value=1.2e-08 Score=95.25 Aligned_cols=38 Identities=26% Similarity=0.430 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~ 40 (247)
.+++|+||||||||||++.|+|++++++|+|.+.+.|.
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 331 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCT
T ss_pred eEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcc
Confidence 58999999999999999999999999999999988765
No 121
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.87 E-value=9.4e-09 Score=90.19 Aligned_cols=87 Identities=15% Similarity=0.154 Sum_probs=56.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCc-eEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G-~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l 81 (247)
.+++++|||||||||+++.|++.+.++.| +|.+.+.|+.. ....+.+ ..+.+..++...... -
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r--------~~a~eqL--~~~~~~~gl~~~~~~------~ 169 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR--------IAAVEQL--KTYAELLQAPLEVCY------T 169 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS--------TTHHHHH--HHHHTTTTCCCCBCS------S
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc--------chHHHHH--HHHHHhcCCCeEecC------C
Confidence 47899999999999999999999998667 89998887631 1222322 223334454322110 1
Q ss_pred hhhHHHHHHHHhhcCCCCCEEEEeCCCc
Q 025844 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ 109 (247)
Q Consensus 82 ~~~~~~~la~al~~~~~p~~lilDEPt~ 109 (247)
...++.++++ +. +++++|+|+|+-
T Consensus 170 ~~~l~~al~~--~~--~~dlvIiDT~G~ 193 (296)
T 2px0_A 170 KEEFQQAKEL--FS--EYDHVFVDTAGR 193 (296)
T ss_dssp HHHHHHHHHH--GG--GSSEEEEECCCC
T ss_pred HHHHHHHHHH--hc--CCCEEEEeCCCC
Confidence 1223345553 36 899999997764
No 122
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.86 E-value=2.2e-09 Score=98.60 Aligned_cols=47 Identities=11% Similarity=0.017 Sum_probs=37.3
Q ss_pred HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH-HHhCCCeEEEE
Q 025844 87 DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH-LKSRNFNVCAV 136 (247)
Q Consensus 87 ~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~-l~~~~~~ii~v 136 (247)
+.++++|.. +++++++|+|+. +.+.....+. +.++. +...|..|+.+
T Consensus 167 ieilk~L~~--~~~vI~Vi~KtD~Lt~~E~~~l~-~~I~~~L~~~gi~I~~i 215 (427)
T 2qag_B 167 LVTMKKLDS--KVNIIPIIAKADAISKSELTKFK-IKITSELVSNGVQIYQF 215 (427)
T ss_dssp HHHHHHTCS--CSEEEEEESCGGGSCHHHHHHHH-HHHHHHHBTTBCCCCCC
T ss_pred HHHHHHHhh--CCCEEEEEcchhccchHHHHHHH-HHHHHHHHHcCCcEEec
Confidence 778888886 899999999998 9888777777 55554 87778777544
No 123
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.84 E-value=4.7e-09 Score=92.24 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC-CcCCCceEEEeccC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIVNLD 39 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~-l~~~~G~v~i~g~d 39 (247)
+-++|+||||||||||++.|+|. +.|++| +.+.|.+
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~ 55 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEK 55 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC----------------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcc
Confidence 56799999999999999999998 888888 6665544
No 124
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.76 E-value=1.9e-09 Score=100.52 Aligned_cols=37 Identities=19% Similarity=0.169 Sum_probs=35.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~ 40 (247)
+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~ 67 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTE 67 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTS
T ss_pred eEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEc
Confidence 6899999999999999999999999999999999765
No 125
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.76 E-value=4.7e-08 Score=90.06 Aligned_cols=152 Identities=18% Similarity=0.168 Sum_probs=82.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l 81 (247)
+.+++++||+||||||++..|++++.+.+++|.+.+.|+.. +. ..+. +..+-+..++.-...... .+ .
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r------~~--a~eq--L~~~~~~~gv~~~~~~~~-~d-p 164 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR------PA--AYDQ--LLQLGNQIGVQVYGEPNN-QN-P 164 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC------HH--HHHH--HHHHHHTTTCCEECCTTC-SC-H
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc------hh--HHHH--HHHHHHhcCCceeecccc-CC-H
Confidence 36789999999999999999999999999999999887522 11 1111 223334444422110000 00 0
Q ss_pred hhhHHHHHHHHhhcCCCCCEEEEeCCCc----ccHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccchhHHhhhhHHH
Q 025844 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ----IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (247)
Q Consensus 82 ~~~~~~~la~al~~~~~p~~lilDEPt~----LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~ 157 (247)
..-....++.+... +++++|+|+|+. .|.....++. .+.+.+ +.. .+++| +|++.-.+....+
T Consensus 165 ~~i~~~al~~a~~~--~~DvvIIDTaGr~~~~~d~~lm~el~-~i~~~~-~pd-~vlLV--lDa~~gq~a~~~a------ 231 (433)
T 3kl4_A 165 IEIAKKGVDIFVKN--KMDIIIVDTAGRHGYGEETKLLEEMK-EMYDVL-KPD-DVILV--IDASIGQKAYDLA------ 231 (433)
T ss_dssp HHHHHHHHHHTTTT--TCSEEEEEECCCSSSCCTTHHHHHHH-HHHHHH-CCS-EEEEE--EEGGGGGGGHHHH------
T ss_pred HHHHHHHHHHHHhc--CCCEEEEECCCCccccCCHHHHHHHH-HHHHhh-CCc-ceEEE--EeCccchHHHHHH------
Confidence 00011344444445 899999999985 4555444443 444444 222 23333 5665433332221
Q ss_pred hHHHhh-ccCCeeeeecccccccc
Q 025844 158 LSAMVQ-LELPHVNILSKMDLVTN 180 (247)
Q Consensus 158 ~~~~~~-~~~p~i~vlsk~dll~~ 180 (247)
..+. .-.+...|+||.|.-.+
T Consensus 232 --~~f~~~~~~~gVIlTKlD~~a~ 253 (433)
T 3kl4_A 232 --SRFHQASPIGSVIITKMDGTAK 253 (433)
T ss_dssp --HHHHHHCSSEEEEEECGGGCSC
T ss_pred --HHHhcccCCcEEEEeccccccc
Confidence 1111 11234457888886443
No 126
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.74 E-value=1.1e-09 Score=93.05 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
..+++|+|||||||||++++|+|++
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999976
No 127
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.74 E-value=2.1e-08 Score=84.00 Aligned_cols=40 Identities=10% Similarity=0.037 Sum_probs=29.4
Q ss_pred CCCEEEEeCCCc-c--cHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025844 98 DDDYLVFDCPGQ-I--ELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (247)
Q Consensus 98 ~p~~lilDEPt~-L--D~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (247)
+|+++++|+|+. . |+...+..+..+.+.+++.|.++++++
T Consensus 128 ~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~ 170 (247)
T 2dr3_A 128 NAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVS 170 (247)
T ss_dssp TCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 799999999998 5 555556666466666666788887763
No 128
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.74 E-value=4.8e-08 Score=87.13 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=36.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~ 42 (247)
.+++++|+|||||||+++.|++.+.+.+|++.+.+.|+..
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 5789999999999999999999999999999999988854
No 129
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.72 E-value=1.2e-08 Score=89.82 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=33.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc--CCCceEEE---eccC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHI---VNLD 39 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~--~~~G~v~i---~g~d 39 (247)
.+++|+||||||||||+++|+|++. |++|+|.+ +|..
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 6899999999999999999999988 99999999 5543
No 130
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.71 E-value=1.6e-08 Score=82.15 Aligned_cols=36 Identities=25% Similarity=0.411 Sum_probs=30.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC-----------CCceEEEecc
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----------VRRTMHIVNL 38 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-----------~~G~v~i~g~ 38 (247)
+.++|+|+||||||||++.++|...+ ..|.+.++|.
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~ 76 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK 76 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTE
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCE
Confidence 67899999999999999999998765 4577777764
No 131
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.66 E-value=1.6e-08 Score=81.76 Aligned_cols=35 Identities=31% Similarity=0.314 Sum_probs=31.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d 39 (247)
.+++|+|||||||||+++.|+|. +..|.|.+++.+
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~ 44 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDD 44 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTH
T ss_pred eEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccc
Confidence 57899999999999999999998 678999998754
No 132
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.64 E-value=3e-08 Score=98.85 Aligned_cols=109 Identities=15% Similarity=0.145 Sum_probs=75.2
Q ss_pred HhCCcCCCceEEEeccCCCC-------CCCCCCc--ccCh----------hhhHhHHHHHHHcCCCCCC-chhhhHHhhh
Q 025844 23 YRHCETVRRTMHIVNLDPAA-------ENFDYPV--AMDI----------RELISLEDVMEELGLGPNG-GLIYCMEHLE 82 (247)
Q Consensus 23 ~g~l~~~~G~v~i~g~d~~~-------~~~~y~~--~~~v----------~e~i~~~~~l~~~~L~~~~-~~~~~~~~l~ 82 (247)
.+.++|..+.|.++|.++.. +.+.|.. .++. .+.-...+.+..+||+... .+. ...++
T Consensus 389 g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l~l~r~--~~~LS 466 (916)
T 3pih_A 389 GRRLNREALSVKINGLNIHEFTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLTLSRS--ATTLS 466 (916)
T ss_dssp SCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTTCBTTSB--GGGCC
T ss_pred cccCChHhcCcEECCccHHHhhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHHHHHcCCccccccCC--cccCC
Confidence 34578889999999976521 1111100 0111 1111245677788887542 222 34566
Q ss_pred hhH--HHHHHHHhhcCCCCC--EEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 83 DNL--DDWLAEELDNYLDDD--YLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 83 ~~~--~~~la~al~~~~~p~--~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
+|. +++||++|+. +|+ ++||||||+ ||+.....++ ++++++++.|.+|++|
T Consensus 467 GGe~QRv~LAraL~~--~p~~~lllLDEPT~gLD~~~~~~l~-~~L~~L~~~G~TvivV 522 (916)
T 3pih_A 467 GGESQRIRLATQIGS--GLTGVIYVLDEPTIGLHPRDTERLI-KTLKKLRDLGNTVIVV 522 (916)
T ss_dssp HHHHHHHHHHHHHHT--TCCSCEEEEECTTTTCCGGGHHHHH-HHHHHTTTTTCEEEEE
T ss_pred HHHHHHHHHHHHHhh--CCCCcEEEEECCccCCCHHHHHHHH-HHHHHHHhcCCEEEEE
Confidence 664 4999999998 776 999999999 9999999999 9999998778898877
No 133
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.62 E-value=4.5e-08 Score=77.35 Aligned_cols=55 Identities=15% Similarity=0.126 Sum_probs=44.1
Q ss_pred HhhhhhHH--HHH------HHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 79 EHLEDNLD--DWL------AEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 79 ~~l~~~~~--~~l------a~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
..+++|++ ++| |++++. +|+++|+||||+ ||+.++..+. ++++.+.+.|.+++++
T Consensus 56 ~~LSgGe~qrv~lA~~Lalaral~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiiiv 119 (148)
T 1f2t_B 56 TFLSGGERIALGLAFRLAMSLYLAG--EISLLILDEPTPYLDEERRRKLI-TIMERYLKKIPQVILV 119 (148)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHS--SCSEEEEESCSCTTCHHHHHHHH-HHHHHTGGGSSEEEEE
T ss_pred hHCCHHHHHHHHHHhhhHHHHHHcC--CCCEEEEECCCccCCHHHHHHHH-HHHHHHHccCCEEEEE
Confidence 45666654 433 478888 999999999999 9999999888 8888886667777666
No 134
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.62 E-value=1e-07 Score=85.49 Aligned_cols=90 Identities=17% Similarity=0.181 Sum_probs=53.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~ 82 (247)
-++.|.||||||||||+..++......+|.+.+...+.. +.+ ...+.+|+....-..... .-.
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~-----~~~-----------~~a~~lG~~~~~l~i~~~-~~~ 124 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA-----LDP-----------EYAKKLGVDTDSLLVSQP-DTG 124 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC-----CCH-----------HHHHHTTCCGGGCEEECC-SSH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC-----cCH-----------HHHHHcCCCHHHeEEecC-CCH
Confidence 368899999999999999988766666777777654321 110 023344443211000000 001
Q ss_pred hhHHHHHHHHhhcCCCCCEEEEeCCCc-c
Q 025844 83 DNLDDWLAEELDNYLDDDYLVFDCPGQ-I 110 (247)
Q Consensus 83 ~~~~~~la~al~~~~~p~~lilDEPt~-L 110 (247)
... ..++++++...+|+++++|+|+. +
T Consensus 125 e~~-l~~~~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 125 EQA-LEIADMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp HHH-HHHHHHHHTTTCCSEEEEECGGGCC
T ss_pred HHH-HHHHHHHHhcCCCCEEEEcChHhhc
Confidence 122 45666666522699999999998 5
No 135
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.61 E-value=1.4e-08 Score=82.54 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=25.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCce
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRT 32 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~ 32 (247)
+++|+|||||||||++++|+|++++..|.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~~~~~~ 31 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGF 31 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCGGGEEC
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCccceE
Confidence 68999999999999999999999854443
No 136
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.61 E-value=1.5e-09 Score=91.78 Aligned_cols=37 Identities=22% Similarity=0.219 Sum_probs=28.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~ 40 (247)
+++|+||||||||||+++|+|++.|++|.|.++|.+.
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 3578999999999999999999999999999988765
No 137
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.61 E-value=1.3e-08 Score=90.73 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=37.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~ 42 (247)
.+++|+||||||||||+++|+|+++|++|+|.+.+.++..
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~ 95 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS 95 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc
Confidence 5799999999999999999999999999999999998853
No 138
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.61 E-value=2.4e-08 Score=80.88 Aligned_cols=37 Identities=32% Similarity=0.392 Sum_probs=32.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (247)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~ 40 (247)
|..+++|+|||||||||+++.|++ +.+|.+.+++.+.
T Consensus 1 mg~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~ 37 (189)
T 2bdt_A 1 MKKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDII 37 (189)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccch
Confidence 566899999999999999999997 5678899988654
No 139
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.58 E-value=5.6e-09 Score=84.54 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=31.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCCcCC---CceEEEeccC
Q 025844 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLD 39 (247)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~~~---~G~v~i~g~d 39 (247)
|+-+++|+|++|||||||++.|.|+++|+ .|.|.++|.+
T Consensus 1 m~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 1 MSLILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp --CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 56689999999999999999999999998 7899888765
No 140
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.58 E-value=3.2e-06 Score=67.51 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999874
No 141
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.57 E-value=1.1e-06 Score=73.77 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=23.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVR 30 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~ 30 (247)
+-++|+|++|+|||||++.+.|...+..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~~~~ 57 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKVFHS 57 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCCSCC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCcCcc
Confidence 5689999999999999999998655433
No 142
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.55 E-value=9.8e-07 Score=77.32 Aligned_cols=39 Identities=23% Similarity=0.347 Sum_probs=35.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~ 41 (247)
.+++++|++|+||||++..+++.+.+.+++|.+.+.|+.
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 578899999999999999999999999999999998874
No 143
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.55 E-value=1.7e-08 Score=83.42 Aligned_cols=38 Identities=21% Similarity=0.220 Sum_probs=31.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCC---CceEEEeccCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDP 40 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~---~G~v~i~g~d~ 40 (247)
.+++|+||||||||||+++|+|+++|. .|.|.++|...
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence 579999999999999999999999864 56676666543
No 144
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.54 E-value=3.6e-08 Score=90.49 Aligned_cols=38 Identities=32% Similarity=0.300 Sum_probs=34.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~ 40 (247)
-+++|+||||||||||+++++|++++.+|+|.+.+.++
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI 205 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc
Confidence 36899999999999999999999999999999998654
No 145
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.54 E-value=3.4e-08 Score=86.61 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=26.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEE---eccCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI---VNLDP 40 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i---~g~d~ 40 (247)
.+++++||||||||||+++|+|+.+|++|+|.+ .|.+.
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~ 210 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHT 210 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC-------------C
T ss_pred CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCc
Confidence 468999999999999999999999999999998 66554
No 146
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.54 E-value=6.7e-06 Score=67.48 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
.-++|+|+.|+|||||++.+.|-
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 147
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.52 E-value=5e-08 Score=86.55 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=34.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCc--CCCceEEEeccCC
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHIVNLDP 40 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~--~~~G~v~i~g~d~ 40 (247)
+++++|+||||||||||+++|.+++. +.+|.+.+.+.|.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 57999999999999999999999987 5678888877664
No 148
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.52 E-value=6e-07 Score=80.32 Aligned_cols=30 Identities=27% Similarity=0.239 Sum_probs=25.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHh--CCcCCCceE
Q 025844 4 AQLVIGPAGSGKSTYCSSLYR--HCETVRRTM 33 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g--~l~~~~G~v 33 (247)
.++|+|++|||||||++.++| +++...|.+
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~v 67 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcc
Confidence 578999999999999999999 666666655
No 149
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.51 E-value=2.1e-08 Score=92.04 Aligned_cols=136 Identities=12% Similarity=0.118 Sum_probs=72.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC-----------cCCCceEEEec-cCCC-CCCCCCCcc----cCh-hhhHh----HHH
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHC-----------ETVRRTMHIVN-LDPA-AENFDYPVA----MDI-RELIS----LED 61 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l-----------~~~~G~v~i~g-~d~~-~~~~~y~~~----~~v-~e~i~----~~~ 61 (247)
.++|+|+||||||||+++++|.. .|+.|.+.+.+ .... .+..++... ... ..... ++.
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~ 238 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV 238 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHh
Confidence 58999999999999999999983 34444444332 1000 011111000 000 01110 111
Q ss_pred HHHHcCCCCCCchhhhHHhhhhhHH--HHHHHHhhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEEEe
Q 025844 62 VMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYL 138 (247)
Q Consensus 62 ~l~~~~L~~~~~~~~~~~~l~~~~~--~~la~al~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l 138 (247)
++..+++. .. +.+.++..++ ..++++++. .|.++++ + +|+... ..+..+.+.+++.+.+++.+
T Consensus 239 lL~vvDls--~~---~~~~ls~g~~el~~la~aL~~--~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~i-- 304 (416)
T 1udx_A 239 LLYVLDAA--DE---PLKTLETLRKEVGAYDPALLR--RPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPV-- 304 (416)
T ss_dssp EEEEEETT--SC---HHHHHHHHHHHHHHHCHHHHH--SCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEEC--
T ss_pred hhEEeCCc--cC---CHHHHHHHHHHHHHHhHHhhc--CCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEE--
Confidence 22223333 11 1233443332 667888888 9999999 7 999876 44535555555557666543
Q ss_pred cccccccchhHHhhhh
Q 025844 139 LDSQFITDVTKFISGC 154 (247)
Q Consensus 139 ~d~~~~~d~~~~~s~~ 154 (247)
+++.-.....++..+
T Consensus 305 -SA~~g~gi~eL~~~i 319 (416)
T 1udx_A 305 -SALTGAGLPALKEAL 319 (416)
T ss_dssp -CTTTCTTHHHHHHHH
T ss_pred -ECCCccCHHHHHHHH
Confidence 455445555554433
No 150
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.50 E-value=3.4e-08 Score=81.27 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
-.++|+||||||||||+++|+|+++
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4689999999999999999999875
No 151
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.50 E-value=4.1e-07 Score=80.97 Aligned_cols=116 Identities=12% Similarity=0.093 Sum_probs=63.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCC-ceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVR-RTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~-G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~ 82 (247)
.+.|.||+|+||||+++.+++.+.+.. ..+...+-.. ..+..+ .+..+++.++........ ......
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~---------~~~~~~--~~~~l~~~l~~~~~~~~~-~~~~~~ 113 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI---------YRNFTA--IIGEIARSLNIPFPRRGL-SRDEFL 113 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT---------CCSHHH--HHHHHHHHTTCCCCSSCC-CHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc---------CCCHHH--HHHHHHHHhCccCCCCCC-CHHHHH
Confidence 688999999999999999999887652 3333322111 001111 134455555543211000 011111
Q ss_pred hhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHh---CCCeEEEE
Q 025844 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS---RNFNVCAV 136 (247)
Q Consensus 83 ~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~---~~~~ii~v 136 (247)
..+...+.....|.++++||+..+|......+. ++++.+.. .+..+|++
T Consensus 114 ----~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~-~~~~~~~~~~~~~~~iI~~ 165 (389)
T 1fnn_A 114 ----ALLVEHLRERDLYMFLVLDDAFNLAPDILSTFI-RLGQEADKLGAFRIALVIV 165 (389)
T ss_dssp ----HHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHH-HHTTCHHHHSSCCEEEEEE
T ss_pred ----HHHHHHHhhcCCeEEEEEECccccchHHHHHHH-HHHHhCCCCCcCCEEEEEE
Confidence 222222222226889999999999877766665 55555443 34455444
No 152
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.49 E-value=4.8e-08 Score=80.34 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=35.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~ 40 (247)
..+++|+|+|||||||+++.|++.+++.+|.+.+.+.|.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 368999999999999999999999998899999887764
No 153
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.49 E-value=1.4e-07 Score=83.68 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=36.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~ 41 (247)
.+++++|||||||||++..|++++.+.+|+|.+.+.|+.
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 578999999999999999999999999999999998863
No 154
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.46 E-value=7.8e-08 Score=78.45 Aligned_cols=32 Identities=19% Similarity=0.354 Sum_probs=26.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEecc
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~ 38 (247)
.+++|+|||||||||++++|+|+++ .+.+.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~ 39 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA----EIKISIS 39 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS----SEEECCC
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC----CeEEece
Confidence 5789999999999999999999964 4555553
No 155
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.46 E-value=1.1e-08 Score=89.41 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=25.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCcCC
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHCETV 29 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~ 29 (247)
+++++|.||+|||||||++.|.+++.+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 4789999999999999999999998764
No 156
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.44 E-value=1.2e-07 Score=89.19 Aligned_cols=37 Identities=19% Similarity=0.359 Sum_probs=33.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d 39 (247)
.+++|+|||||||||++++|+|+++|+.|.|.+.|.+
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 4589999999999999999999999999999998754
No 157
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.43 E-value=7.3e-08 Score=85.14 Aligned_cols=39 Identities=18% Similarity=0.168 Sum_probs=34.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC--------cCCCceEEEeccCCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC--------ETVRRTMHIVNLDPA 41 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l--------~~~~G~v~i~g~d~~ 41 (247)
-+++|+|+||||||||++.|.|.. .++.|+|.++|.++.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~ 51 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIG 51 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEEC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHh
Confidence 478999999999999999999997 789999999997653
No 158
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.42 E-value=2.8e-06 Score=75.96 Aligned_cols=42 Identities=24% Similarity=0.291 Sum_probs=33.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCC
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE 43 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~ 43 (247)
.+.++|+|++|+|||||+..+++.+...+.+|.+...||...
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~ 120 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSST 120 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 368999999999999999999988776677888888887543
No 159
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.42 E-value=1.1e-06 Score=79.07 Aligned_cols=89 Identities=17% Similarity=0.135 Sum_probs=53.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~ 82 (247)
-++.|.||||||||||+..++....+.+|.+.+........ + ...+++++.+..-..... ...
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~-----~-----------~ra~rlgv~~~~l~i~~~-~~~ 124 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD-----P-----------VYAKNLGVDLKSLLISQP-DHG 124 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC-----H-----------HHHHHHTCCGGGCEEECC-SSH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc-----h-----------HHHHHcCCchhhhhhhhc-cCH
Confidence 46889999999999999999998888888876654321110 0 034445554321111110 011
Q ss_pred hhHHHHHHHHhhcCCCCCEEEEeCCCc
Q 025844 83 DNLDDWLAEELDNYLDDDYLVFDCPGQ 109 (247)
Q Consensus 83 ~~~~~~la~al~~~~~p~~lilDEPt~ 109 (247)
... .++++.+.....|+++++|+-+.
T Consensus 125 e~~-l~~~~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 125 EQA-LEIVDELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHH-HHHHHHHHHTSCCSEEEEECTTT
T ss_pred HHH-HHHHHHHhhhcCCCeEEehHhhh
Confidence 112 44455554322799999998765
No 160
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.42 E-value=1.7e-05 Score=63.52 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999864
No 161
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.41 E-value=1.5e-07 Score=82.67 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEE---eccCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI---VNLDP 40 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i---~g~d~ 40 (247)
.+++++||||||||||+++|+ ..+|.+|+|.+ .|.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~ 205 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHT 205 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------C
T ss_pred cEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCc
Confidence 468999999999999999999 99999999999 77554
No 162
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.38 E-value=5.7e-06 Score=75.96 Aligned_cols=39 Identities=26% Similarity=0.274 Sum_probs=35.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~ 41 (247)
.+++++|++||||||++..|++++.+.+++|.+.+.|+.
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 578899999999999999999999999999999988763
No 163
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.37 E-value=1.1e-07 Score=79.63 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=16.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCcC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLY-RHCET 28 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~-g~l~~ 28 (247)
.+++|+|||||||||++++|+ |++++
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC----C
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 478999999999999999999 99854
No 164
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.37 E-value=2e-07 Score=83.80 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=27.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc-CCCceEEEe-cc
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIV-NL 38 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~-~~~G~v~i~-g~ 38 (247)
.+++|+||||||||||+++|+|..+ +..|+|.+. |.
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~ 253 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGL 253 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSSCCCCC--------
T ss_pred CEEEEECCCCccHHHHHHHHhccccccccCCccccCCC
Confidence 3689999999999999999999999 999999886 54
No 165
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.36 E-value=1.8e-07 Score=76.70 Aligned_cols=34 Identities=21% Similarity=0.157 Sum_probs=29.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~ 40 (247)
.+++|+|||||||||+++.|++.+ |.+.+++.+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~ 63 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAF 63 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccc
Confidence 478999999999999999999986 7888887553
No 166
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.35 E-value=5e-06 Score=76.65 Aligned_cols=102 Identities=16% Similarity=0.120 Sum_probs=59.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l 81 (247)
+.+++++|++||||||++..|+.++...+.+|.+...|+... . ..+ .+..+-+..++.-...... ...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~------a--a~e--qL~~~~~~~gvpv~~~~~~--~dp 167 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP------G--AYH--QLRQLLDRYHIEVFGNPQE--KDA 167 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST------H--HHH--HHHHHHGGGTCEEECCTTC--CCH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch------h--HHH--HHHHHHHhcCCcEEecCCC--CCH
Confidence 468999999999999999999999888777898887775321 0 111 1223333444421110000 000
Q ss_pred hhhHHHHHHHHhhcCCCCCEEEEeCCCc--ccHHhHHH
Q 025844 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVP 117 (247)
Q Consensus 82 ~~~~~~~la~al~~~~~p~~lilDEPt~--LD~~~~~~ 117 (247)
..-.+.++..+-.. +++++|+|+|+- .|.....+
T Consensus 168 ~~i~~~al~~a~~~--~~DvVIIDTaGrl~~d~~lm~e 203 (443)
T 3dm5_A 168 IKLAKEGVDYFKSK--GVDIIIVDTAGRHKEDKALIEE 203 (443)
T ss_dssp HHHHHHHHHHHHHT--TCSEEEEECCCCSSCCHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCCEEEEECCCcccchHHHHHH
Confidence 01111334444445 699999999985 55444433
No 167
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.34 E-value=1.1e-06 Score=75.50 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
+-++++|++|||||||++.++|..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 678999999999999999999863
No 168
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.34 E-value=5.4e-08 Score=83.07 Aligned_cols=32 Identities=28% Similarity=0.351 Sum_probs=30.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHH---hCCcCCCceEE
Q 025844 3 YAQLVIGPAGSGKSTYCSSLY---RHCETVRRTMH 34 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~---g~l~~~~G~v~ 34 (247)
.+++|+|||||||||++++|+ |+..+++|.++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 579999999999999999999 99999999887
No 169
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.33 E-value=1.9e-07 Score=75.32 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=29.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC-CCceEEEeccCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDP 40 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-~~G~v~i~g~d~ 40 (247)
-+++|+||||||||||++.|.+.+++ ..|.|......|
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~ 44 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPP 44 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCC
Confidence 47899999999999999999998764 456665544333
No 170
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.31 E-value=1.6e-06 Score=69.53 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
+-++|+|++|||||||++.+.+-.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 568999999999999999999753
No 171
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.30 E-value=4.4e-07 Score=74.33 Aligned_cols=32 Identities=25% Similarity=0.245 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEec
Q 025844 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (247)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g 37 (247)
|+++++|+||+||||||+++.|+++ |...++.
T Consensus 1 m~~~i~l~G~~GsGKST~~~~La~l-----g~~~id~ 32 (206)
T 1jjv_A 1 MTYIVGLTGGIGSGKTTIANLFTDL-----GVPLVDA 32 (206)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHTT-----TCCEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHC-----CCcccch
Confidence 6789999999999999999999983 5555543
No 172
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.29 E-value=2e-07 Score=76.33 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=32.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceE--EEeccCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTM--HIVNLDP 40 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v--~i~g~d~ 40 (247)
.+++|+|||||||||+.+.|++.+. ..|.+ ++++.+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 5799999999999999999999988 67877 7777543
No 173
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.29 E-value=1.1e-07 Score=83.82 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEE
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i 35 (247)
-+++|+||||||||||+++|+|..++..|+|.+
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~ 206 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 206 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred CEEEEECCCCCCHHHHHHHhcccccccccceee
Confidence 368999999999999999999999999999987
No 174
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.29 E-value=2.8e-07 Score=73.17 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCCcC
Q 025844 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET 28 (247)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~~ 28 (247)
|+.+++|+|||||||||+++.|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3468999999999999999999998653
No 175
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.28 E-value=3.5e-07 Score=74.53 Aligned_cols=29 Identities=24% Similarity=0.427 Sum_probs=25.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCc
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR 31 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G 31 (247)
.+++|+|||||||||+++.|++.+.|+.|
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 57899999999999999999999966544
No 176
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.27 E-value=3.7e-07 Score=76.61 Aligned_cols=34 Identities=24% Similarity=0.461 Sum_probs=30.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~ 40 (247)
.+++|.|+|||||||+++.|+|+ +|+|.+.+.+.
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred eEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 57899999999999999999998 78899887653
No 177
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.27 E-value=1.1e-05 Score=62.64 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++++|+.|+|||||++.+.+-
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 67899999999999999999863
No 178
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.27 E-value=8.9e-06 Score=71.30 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
..++|+|++|+|||||++.+.|.
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 46899999999999999999974
No 179
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.26 E-value=3.5e-07 Score=81.86 Aligned_cols=41 Identities=22% Similarity=0.436 Sum_probs=36.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE 43 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~ 43 (247)
.+++|+|++|||||||++.+.|.+.+.+|+|.+.+.||...
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~ 115 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC 115 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence 68999999999999999999999999999999999988653
No 180
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.26 E-value=1e-06 Score=81.37 Aligned_cols=131 Identities=12% Similarity=0.024 Sum_probs=69.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCc-eEEEeccCCCCCC---------CCCCc------ccChhhhHhHHHHHHHcC
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAEN---------FDYPV------AMDIRELISLEDVMEELG 67 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G-~v~i~g~d~~~~~---------~~y~~------~~~v~e~i~~~~~l~~~~ 67 (247)
.+.|.|+||+|||||+..+++...+..| .|.+.+.....+. ..+.. .++..+.-.+.+.++.++
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~a~~~l~ 284 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSLS 284 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 6789999999999999999998766444 7888775532211 11100 112222222344444443
Q ss_pred CCCCCchhhhHHhhhhhHHHHHHHHhhcCCCCCEEEEeCCCc-ccHH----h-H---HHHHHHHHHHHHh-CCCeEEEEE
Q 025844 68 LGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELF----T-H---VPVLRNFVDHLKS-RNFNVCAVY 137 (247)
Q Consensus 68 L~~~~~~~~~~~~l~~~~~~~la~al~~~~~p~~lilDEPt~-LD~~----~-~---~~~~~~ll~~l~~-~~~~ii~v~ 137 (247)
..+..-.. ....-...+ ...++.+....+|+++++|+|+. .... . . ..+. +.++.+++ .+.+|++++
T Consensus 285 ~~~l~i~d-~~~~s~~~i-~~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~-~~Lk~lAke~~i~vi~~s 361 (454)
T 2r6a_A 285 NAGIYIDD-TPSIRVSDI-RAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEIS-RSLKALARELEVPVIALS 361 (454)
T ss_dssp SSCEEEEC-CTTCCHHHH-HHHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHH-HHHHHHHHHHTCCEEEEE
T ss_pred cCCEEEEC-CCCCCHHHH-HHHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHH-HHHHHHHHHhCCeEEEEe
Confidence 22210000 000011223 45556665322899999999998 4321 1 1 2333 44455543 488887774
No 181
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.26 E-value=2.2e-06 Score=85.53 Aligned_cols=70 Identities=13% Similarity=0.126 Sum_probs=56.7
Q ss_pred HHHHcCCCCC-CchhhhHHhhhhhH--HHHHHHHhhcCCC--CCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEE
Q 025844 62 VMEELGLGPN-GGLIYCMEHLEDNL--DDWLAEELDNYLD--DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (247)
Q Consensus 62 ~l~~~~L~~~-~~~~~~~~~l~~~~--~~~la~al~~~~~--p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~ 135 (247)
.+..+||+.. ..+. ...+++|. ++.||++|.. + |+++||||||+ ||+.....++ +++++|++.|.+||+
T Consensus 487 ~L~~vGL~~l~ldR~--~~tLSGGEkQRV~LA~aL~~--~~~~~llILDEPTagLdp~~~~~L~-~~L~~Lr~~G~TVIv 561 (972)
T 2r6f_A 487 FLQNVGLDYLTLSRS--AGTLSGGEAQRIRLATQIGS--RLTGVLYVLDEPSIGLHQRDNDRLI-ATLKSMRDLGNTLIV 561 (972)
T ss_dssp HHHHHTCTTSBSSSB--GGGCCHHHHHHHHHHHHHTT--CCCSCEEEEECTTTTCCGGGHHHHH-HHHHHHHTTTCEEEE
T ss_pred HhhhCCCCccccCCc--cccCCHHHHHHHHHHHHHhh--CCCCCEEEEeCcccCCCHHHHHHHH-HHHHHHHhCCCEEEE
Confidence 5778898753 2222 34666664 4899999998 7 59999999999 9999999999 999999878999888
Q ss_pred E
Q 025844 136 V 136 (247)
Q Consensus 136 v 136 (247)
|
T Consensus 562 V 562 (972)
T 2r6f_A 562 V 562 (972)
T ss_dssp E
T ss_pred E
Confidence 7
No 182
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.25 E-value=1.4e-05 Score=61.78 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYR 24 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (247)
+-++++|+.|+|||||++.+.+
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 6789999999999999999986
No 183
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.25 E-value=7.2e-06 Score=71.70 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
..++|+|++|+|||||++.+.|.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999999985
No 184
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.25 E-value=2.4e-06 Score=84.54 Aligned_cols=70 Identities=23% Similarity=0.188 Sum_probs=56.7
Q ss_pred HHHHcCCCCC-CchhhhHHhhhhhH--HHHHHHHhhcCCCC--CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEE
Q 025844 62 VMEELGLGPN-GGLIYCMEHLEDNL--DDWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (247)
Q Consensus 62 ~l~~~~L~~~-~~~~~~~~~l~~~~--~~~la~al~~~~~p--~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~ 135 (247)
.+..+||+.. .++. ...++++. ++.||++|+. +| .++||||||+ ||+.....++ +++++|++.|.+||+
T Consensus 362 ~L~~vGL~~l~l~r~--~~tLSGGe~QRV~LA~aL~~--~p~~~llILDEPT~~Ld~~~~~~L~-~~l~~L~~~G~TVIv 436 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRS--TPTLSPGELQRLRLATQLYS--NLFGVVYVLDEPSAGLHPADTEALL-SALENLKRGGNSLFV 436 (842)
T ss_dssp HHHHTTCTTSBTTCB--GGGSCHHHHHHHHHHHHTTT--CCCSCEEEEECTTTTCCGGGHHHHH-HHHHHHHTTTCEEEE
T ss_pred HHHhCCCCcCCccCC--cCcCCHHHHHHHHHHHHHhh--CCCCeEEEeeCccccCCHHHHHHHH-HHHHHHHHcCCEEEE
Confidence 6778898753 2222 34566654 4899999999 88 5999999999 9999999999 999999888989887
Q ss_pred E
Q 025844 136 V 136 (247)
Q Consensus 136 v 136 (247)
|
T Consensus 437 V 437 (842)
T 2vf7_A 437 V 437 (842)
T ss_dssp E
T ss_pred E
Confidence 7
No 185
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.25 E-value=1.2e-05 Score=63.58 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 56899999999999999999964
No 186
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.25 E-value=6.4e-06 Score=67.45 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
+-++|+|++|+|||||++.+.+-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 568999999999999999999754
No 187
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.23 E-value=5.3e-07 Score=72.32 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=25.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCce
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRT 32 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~ 32 (247)
+.+|+|||||||||++++|.+.+.+..|.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~~~~~ 56 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGGLSAK 56 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence 67899999999999999999988776553
No 188
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.22 E-value=1.4e-06 Score=70.45 Aligned_cols=57 Identities=11% Similarity=0.123 Sum_probs=42.8
Q ss_pred HHhhhhhHH--HHHHHHhhc--CCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 78 MEHLEDNLD--DWLAEELDN--YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 78 ~~~l~~~~~--~~la~al~~--~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
...+++|.+ ++||++++. +..|+++|||||++ ||+.+...+. ++++++.+. .+++++
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~-~~l~~~~~~-~~~ivi 123 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVA-DLIKESSKE-SQFIVI 123 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHH-HHHHHHTTT-SEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHH-HHHHHhccC-CEEEEE
Confidence 355677654 788888874 11579999999999 9999999998 888888543 455544
No 189
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.22 E-value=3.2e-06 Score=77.88 Aligned_cols=98 Identities=14% Similarity=0.189 Sum_probs=57.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCC--CceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETV--RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~--~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l 81 (247)
.+.|.||+|+|||||++++++.+... +..+.+. +..+. ..++.+.+.-
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v---------------~~~~~--~~~~~~~~~~------------- 181 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI---------------TSEKF--LNDLVDSMKE------------- 181 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEE---------------EHHHH--HHHHHHHHHT-------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe---------------eHHHH--HHHHHHHHHc-------------
Confidence 47899999999999999999876432 2222221 11111 1122211110
Q ss_pred hhhHHHHHHHHhhcCCCCCEEEEeCCCc-ccH-HhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IEL-FTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 82 ~~~~~~~la~al~~~~~p~~lilDEPt~-LD~-~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
... ..+...+.. ++++|++||+.. .+. ..+..++ .+++.+.+.|..++++
T Consensus 182 -~~~-~~~~~~~~~--~~~vL~IDEi~~l~~~~~~q~~l~-~~l~~l~~~~~~iIit 233 (440)
T 2z4s_A 182 -GKL-NEFREKYRK--KVDILLIDDVQFLIGKTGVQTELF-HTFNELHDSGKQIVIC 233 (440)
T ss_dssp -TCH-HHHHHHHTT--TCSEEEEECGGGGSSCHHHHHHHH-HHHHHHHTTTCEEEEE
T ss_pred -ccH-HHHHHHhcC--CCCEEEEeCcccccCChHHHHHHH-HHHHHHHHCCCeEEEE
Confidence 011 222333444 789999999988 432 5566666 7788776667666554
No 190
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.22 E-value=2.3e-06 Score=85.61 Aligned_cols=70 Identities=14% Similarity=0.136 Sum_probs=55.8
Q ss_pred HHHHcCCCCC-CchhhhHHhhhhhH--HHHHHHHhhcCCC--CCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEE
Q 025844 62 VMEELGLGPN-GGLIYCMEHLEDNL--DDWLAEELDNYLD--DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (247)
Q Consensus 62 ~l~~~~L~~~-~~~~~~~~~l~~~~--~~~la~al~~~~~--p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~ 135 (247)
.+..+||+.. ..+. ...+++|. ++.||++|.. + |+++||||||+ ||+.....++ +++++|++.|.+||+
T Consensus 504 ~L~~vGL~~l~l~r~--~~tLSGGEkQRV~LA~aL~~--~~~~~llILDEPTagLdp~~~~~L~-~~L~~Lr~~G~TVIv 578 (993)
T 2ygr_A 504 FLLDVGLEYLSLSRA--AATLSGGEAQRIRLATQIGS--GLVGVLYVLDEPSIGLHQRDNRRLI-ETLTRLRDLGNTLIV 578 (993)
T ss_dssp HHHHHTGGGSCTTCB--GGGCCHHHHHHHHHHHHHTT--CCCSCEEEEECTTTTCCHHHHHHHH-HHHHHHHHTTCEEEE
T ss_pred HHhhCCCCccccCCC--cccCCHHHHHHHHHHHHHhh--CCCCcEEEEeCcccCCCHHHHHHHH-HHHHHHHHcCCEEEE
Confidence 4677888642 2222 34566654 4899999998 7 58999999999 9999999999 999999888999888
Q ss_pred E
Q 025844 136 V 136 (247)
Q Consensus 136 v 136 (247)
|
T Consensus 579 V 579 (993)
T 2ygr_A 579 V 579 (993)
T ss_dssp E
T ss_pred E
Confidence 7
No 191
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.21 E-value=5.4e-06 Score=63.94 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++++|+.|+|||||++.+.+-
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999874
No 192
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.20 E-value=2e-06 Score=79.24 Aligned_cols=39 Identities=26% Similarity=0.306 Sum_probs=34.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~ 41 (247)
.+++++|++|+||||++..|++.+...+.+|.+...|+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~ 138 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 478999999999999999999998877778999988874
No 193
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.19 E-value=8e-07 Score=70.79 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=28.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~ 40 (247)
.+++|+|||||||||+++.|++.+ |.+.+++.+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~ 42 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL 42 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence 578999999999999999999875 6777776443
No 194
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.19 E-value=5.3e-06 Score=65.34 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|||||||++.+.+-
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999874
No 195
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.18 E-value=7.6e-06 Score=71.69 Aligned_cols=97 Identities=11% Similarity=0.158 Sum_probs=56.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhhh
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~~ 83 (247)
.+.|.||+|+||||+++.+++.+...+..+.+.+ ..+. ..++...+. ..
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~---------------~~~~--~~~~~~~~~--------------~~ 87 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS---------------ADDF--AQAMVEHLK--------------KG 87 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE---------------HHHH--HHHHHHHHH--------------HT
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE---------------HHHH--HHHHHHHHH--------------cC
Confidence 4789999999999999999987765444443332 1111 111111110 00
Q ss_pred hHHHHHHHHhhcCCCCCEEEEeCCCcccH--HhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 84 NLDDWLAEELDNYLDDDYLVFDCPGQIEL--FTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 84 ~~~~~la~al~~~~~p~~lilDEPt~LD~--~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
.. ..+... .. ++++|++||+..+.. ..+..+. .+++.+.+.+..++++
T Consensus 88 ~~-~~~~~~-~~--~~~vL~iDEi~~l~~~~~~~~~l~-~~l~~~~~~~~~iii~ 137 (324)
T 1l8q_A 88 TI-NEFRNM-YK--SVDLLLLDDVQFLSGKERTQIEFF-HIFNTLYLLEKQIILA 137 (324)
T ss_dssp CH-HHHHHH-HH--TCSEEEEECGGGGTTCHHHHHHHH-HHHHHHHHTTCEEEEE
T ss_pred cH-HHHHHH-hc--CCCEEEEcCcccccCChHHHHHHH-HHHHHHHHCCCeEEEE
Confidence 01 111112 24 689999999988543 5566666 7777776666665554
No 196
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.18 E-value=1e-05 Score=63.55 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999975
No 197
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.17 E-value=9.2e-07 Score=73.02 Aligned_cols=33 Identities=24% Similarity=0.482 Sum_probs=26.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC-CCceEEE
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHI 35 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~-~~G~v~i 35 (247)
-+++|+|||||||||+++.|++.+++ ..+.+..
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~ 42 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPETSFDYSISM 42 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCE
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEec
Confidence 47899999999999999999999876 3334433
No 198
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.16 E-value=2e-05 Score=63.48 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999864
No 199
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.15 E-value=1.3e-05 Score=62.93 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999864
No 200
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.14 E-value=8.9e-07 Score=71.93 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
+-++|+|+||||||||++.++|..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 678999999999999999999975
No 201
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.14 E-value=3e-07 Score=76.20 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=27.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC---cCCCceEEE
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHC---ETVRRTMHI 35 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l---~~~~G~v~i 35 (247)
+..++|+||+||||||+++.|++.+ .++.|.++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 3689999999999999999999865 556666554
No 202
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.14 E-value=9.8e-06 Score=62.56 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++++|+.|+|||||++.+.+-
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999974
No 203
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.12 E-value=1.5e-06 Score=75.18 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=30.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~ 40 (247)
.++|+||||||||||+++++|.+.+ +.+.+.|.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l 80 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANESGL--NFISVKGPEL 80 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTT
T ss_pred eEEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHH
Confidence 4899999999999999999999876 6788777543
No 204
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.10 E-value=5.7e-06 Score=68.27 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=26.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~ 36 (247)
-.+.|.||+|+||||+++.++..+...+..+.+.
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~ 86 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYI 86 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 3578999999999999999998766544444443
No 205
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.09 E-value=3.1e-05 Score=61.42 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|++|+|||||++.+.+-
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 45789999999999999999874
No 206
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.09 E-value=2e-06 Score=74.15 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhC
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
++-++++|++|||||||++.++|-
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999999875
No 207
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.06 E-value=1.8e-05 Score=75.59 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=29.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCC-ceEEEecc
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVR-RTMHIVNL 38 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~-G~v~i~g~ 38 (247)
.++|+||||+||||++++|++.+++.. |.+.+.+.
T Consensus 62 ~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~ 97 (604)
T 3k1j_A 62 HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPN 97 (604)
T ss_dssp CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECC
T ss_pred EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCC
Confidence 578999999999999999999998887 56666554
No 208
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.05 E-value=2.7e-06 Score=77.32 Aligned_cols=36 Identities=14% Similarity=0.304 Sum_probs=31.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh------------CCcCCCceEEEec
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYR------------HCETVRRTMHIVN 37 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g------------~l~~~~G~v~i~g 37 (247)
...++|+|+||||||||+++|+| ...|+.|.+.+.|
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence 35789999999999999999999 5678889888876
No 209
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.03 E-value=1.7e-05 Score=74.40 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=32.2
Q ss_pred EEEEcCCCCcHHHHHHHHHh--CCcCCCceEEEeccCCCC
Q 025844 5 QLVIGPAGSGKSTYCSSLYR--HCETVRRTMHIVNLDPAA 42 (247)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g--~l~~~~G~v~i~g~d~~~ 42 (247)
++|.|++||||||+++.|.. +.+++.+++.+...|+..
T Consensus 170 lLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 170 LLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 67999999999999999876 556667889998888864
No 210
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.03 E-value=4.5e-06 Score=67.91 Aligned_cols=33 Identities=15% Similarity=0.156 Sum_probs=26.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEE
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i 35 (247)
-.+.|.||+|+|||||++.++......++.+.+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~ 87 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLI 87 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 468899999999999999999877655555543
No 211
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.02 E-value=3.3e-05 Score=59.65 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++++|+.|+|||||++.+.+-
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 66899999999999999999964
No 212
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.01 E-value=2.4e-06 Score=70.51 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
-.++|+||+|||||||++.|.+..+
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3678999999999999999999865
No 213
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.99 E-value=1.9e-06 Score=81.67 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=30.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCc-eEE-Eec
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMH-IVN 37 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G-~v~-i~g 37 (247)
.+++|+|+|||||||++++|+|.+.+++| ++. ++|
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 57899999999999999999999999886 675 554
No 214
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.98 E-value=3.3e-06 Score=68.85 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYR 24 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (247)
+.++|+|+|||||||+++.|++
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 5799999999999999999999
No 215
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.96 E-value=3.7e-05 Score=71.51 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
-.+.|.||+|+||||+++++++..
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 458899999999999999999854
No 216
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.95 E-value=6.2e-05 Score=58.38 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYR 24 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (247)
+-++++|+.|+|||||++.+.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5689999999999999999987
No 217
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.94 E-value=4.2e-06 Score=67.66 Aligned_cols=40 Identities=15% Similarity=0.012 Sum_probs=31.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (247)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~ 40 (247)
|+.+++|+|++|||||||++.+.+.+++.+.++.....++
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 4567899999999999999999998776655555554443
No 218
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.94 E-value=0.00013 Score=59.20 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++++|+.|+|||||++.+.+-
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 67899999999999999999853
No 219
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.93 E-value=9.1e-05 Score=68.94 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+.++++|+.++|||||++.|.|.
T Consensus 20 ~~I~iiG~~d~GKSTLi~~L~~~ 42 (482)
T 1wb1_A 20 INLGIFGHIDHGKTTLSKVLTEI 42 (482)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCChHHHHHHHHHCC
Confidence 57899999999999999999864
No 220
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.93 E-value=2.7e-05 Score=66.48 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
-++++|++|||||||++.++|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5789999999999999999875
No 221
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.92 E-value=1.6e-05 Score=68.67 Aligned_cols=98 Identities=18% Similarity=0.233 Sum_probs=57.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~ 82 (247)
..+.+.||+|+||||+++.+++.+...++.+...+...... .. ...+ .+|-.+.. . ..-.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~------~~------~~~~---l~g~~~~~-~----~~~~ 107 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME------KH------AVSR---LIGAPPGY-V----GYEE 107 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCS------TT------HHHH---HHCCCTTS-T----TTTT
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccc------cc------cHHH---hcCCCCcc-c----cccc
Confidence 46899999999999999999999888777766654321110 00 0111 12221110 0 0000
Q ss_pred hhHHHHHHHHhhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHH
Q 025844 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (247)
Q Consensus 83 ~~~~~~la~al~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~ 125 (247)
. ..+..++... ...++++||...+++.....+. .+++.
T Consensus 108 ~---~~~~~~~~~~-~~~vl~lDEi~~l~~~~~~~Ll-~~le~ 145 (311)
T 4fcw_A 108 G---GQLTEAVRRR-PYSVILFDAIEKAHPDVFNILL-QMLDD 145 (311)
T ss_dssp C---CHHHHHHHHC-SSEEEEEETGGGSCHHHHHHHH-HHHHH
T ss_pred c---chHHHHHHhC-CCeEEEEeChhhcCHHHHHHHH-HHHhc
Confidence 0 1223334331 4479999999889887776666 55554
No 222
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.92 E-value=9.7e-05 Score=69.19 Aligned_cols=38 Identities=26% Similarity=0.368 Sum_probs=31.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~ 40 (247)
.+++|+|++||||||++..|+..+...+.++.+...|+
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 47899999999999999999977765555788877776
No 223
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.92 E-value=5.9e-06 Score=69.78 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=27.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEecc
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~ 38 (247)
.++|+||||||||||++++++... .|.+.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~ 83 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEAR--VPFITASGS 83 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHH
Confidence 578999999999999999999875 567766653
No 224
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.90 E-value=0.00011 Score=66.53 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
+.++++|+.|+|||||++.++|...
T Consensus 9 ~~I~vvG~~~~GKSTLi~~L~~~~~ 33 (403)
T 3sjy_A 9 VNIGVVGHVDHGKTTLVQAITGIWT 33 (403)
T ss_dssp CEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCccc
Confidence 6789999999999999999998654
No 225
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.89 E-value=7.7e-06 Score=66.94 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
+.+++|+|++||||||+++.|++.++
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999999864
No 226
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.89 E-value=4.7e-06 Score=67.09 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=29.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~ 36 (247)
.+++|+|++||||||+++.+++.+.+.++.+.+.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 6789999999999999999999998877777554
No 227
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.89 E-value=2.2e-05 Score=66.95 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYR 24 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (247)
+-++++|+.|+|||||++.+.|
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 6789999999999999999997
No 228
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.88 E-value=1.1e-06 Score=77.85 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=28.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC----cCCCceEEEec
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC----ETVRRTMHIVN 37 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l----~~~~G~v~i~g 37 (247)
-.++|.||||+|||||+++++|.+ .+.+|++...+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~ 90 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ 90 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCH
Confidence 357899999999999999999988 55666655443
No 229
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.88 E-value=6.1e-06 Score=70.86 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=28.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEecc
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~ 38 (247)
.++|+||||||||||++++++.+. .|.+.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~ 107 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEAR--VPFITASGS 107 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHH
T ss_pred eEEEECCCcChHHHHHHHHHHHcC--CCEEEecHH
Confidence 589999999999999999999875 577776654
No 230
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.88 E-value=8e-06 Score=64.72 Aligned_cols=24 Identities=42% Similarity=0.540 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHh
Q 025844 1 MGYAQLVIGPAGSGKSTYCSSLYR 24 (247)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g 24 (247)
|+.+++|.|++||||||+.+.|+.
T Consensus 1 M~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 1 MKKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHHHHh
Confidence 778899999999999999999997
No 231
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.87 E-value=5.9e-06 Score=67.38 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
+.+++|+|++||||||+++.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999875
No 232
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.87 E-value=0.00027 Score=64.88 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
.-++++|+.++|||||++.|.+.
T Consensus 18 ~~i~iiG~~d~GKSTL~~~Ll~~ 40 (439)
T 3j2k_7 18 VNVVFIGHVDAGKSTIGGQIMYL 40 (439)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 45899999999999999999654
No 233
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.87 E-value=0.00022 Score=61.83 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
..++|+|+.|||||||++.|.|.-
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCC
Confidence 358999999999999999999974
No 234
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.86 E-value=6.3e-06 Score=65.92 Aligned_cols=35 Identities=17% Similarity=0.147 Sum_probs=28.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCc--eEEEecc
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNL 38 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G--~v~i~g~ 38 (247)
.+++|+|++||||||+++.|++.+++ .| .+.+++.
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~ 42 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGD 42 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECCh
Confidence 57889999999999999999998876 45 4444543
No 235
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.86 E-value=3.4e-05 Score=69.22 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=27.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEecc
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~ 38 (247)
-++.|.||+|||||||+..++......++.+.+...
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 468899999999999999888765545556666543
No 236
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.84 E-value=1.1e-05 Score=75.77 Aligned_cols=51 Identities=20% Similarity=0.074 Sum_probs=44.5
Q ss_pred hhhH--HHHHHHHhhcCCCC--CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 82 EDNL--DDWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 82 ~~~~--~~~la~al~~~~~p--~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
++|. ++.||++++. +| ++||||||++ ||+.+...+. ++++.+++ |.+|++|
T Consensus 399 SgG~~qrv~la~~l~~--~~~~~~lilDEp~~gld~~~~~~i~-~~l~~~~~-~~~vi~i 454 (517)
T 4ad8_A 399 SGGELSRVMLAVSTVL--GADTPSVVFDEVDAGIGGAAAIAVA-EQLSRLAD-TRQVLVV 454 (517)
T ss_dssp CSSHHHHHHHHHHHHH--CCCSSEEEECSCSSSCCTHHHHHHH-HHHHHHHH-HSEEEEE
T ss_pred CHHHHHHHHHHHHHHh--CCCCCEEEEeCCcCCCCHHHHHHHH-HHHHHHhC-CCEEEEE
Confidence 6654 3899999999 99 9999999999 9999999998 89999876 7888766
No 237
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.83 E-value=4.1e-06 Score=74.03 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCC
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETV 29 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~ 29 (247)
.++|.||+|+|||||++.+++.+.+.
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 57899999999999999999987654
No 238
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.83 E-value=0.00014 Score=64.63 Aligned_cols=23 Identities=17% Similarity=0.197 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
-++.|.||+|||||||+..++..
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999875
No 239
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.83 E-value=0.00019 Score=63.90 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
-++|+|+.|+|||||++.+.|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 240
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.82 E-value=9.7e-05 Score=57.16 Aligned_cols=31 Identities=19% Similarity=0.255 Sum_probs=25.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEE
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMH 34 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~ 34 (247)
-+.|.||+|+|||++.+.+.......++.+.
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v 56 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFGRNAQGEFV 56 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSSTTTTSCCE
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCccCCCEE
Confidence 3689999999999999999987665444443
No 241
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.81 E-value=7.9e-06 Score=74.78 Aligned_cols=55 Identities=9% Similarity=0.164 Sum_probs=42.4
Q ss_pred hhhhHH--HHHHHHhhcC--CCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 81 LEDNLD--DWLAEELDNY--LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 81 l~~~~~--~~la~al~~~--~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
+++|++ ++||++++.. .+|+++|||||++ ||+..+..+. ++++.+.+.+.+++++
T Consensus 334 lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~-~~l~~~~~~~~~~ii~ 393 (430)
T 1w1w_A 334 LSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIA-AYIRRHRNPDLQFIVI 393 (430)
T ss_dssp SCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHH-HHHHHHCBTTBEEEEE
T ss_pred CCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHH-HHHHHHhcCCCEEEEE
Confidence 556544 7888888820 1799999999999 9999999888 8888875556666655
No 242
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.81 E-value=0.00048 Score=59.02 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
.-++|+|++|+|||||++.+.|.-
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 358999999999999999999864
No 243
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.80 E-value=5.2e-06 Score=68.36 Aligned_cols=36 Identities=28% Similarity=0.329 Sum_probs=29.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCcCCCc--eEEEec
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVN 37 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G--~v~i~g 37 (247)
..+++|+|++||||||+++.|++.+.|..| .+.+++
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 357899999999999999999999886667 555554
No 244
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.79 E-value=1.6e-05 Score=70.89 Aligned_cols=80 Identities=23% Similarity=0.262 Sum_probs=41.7
Q ss_pred CCEEEEeCCCcccHHh-HHHHHHHHHHHHHhCCCeEEEEEecccccc--cchhHHhhhhHHHhHHHh--hccCCeeeeec
Q 025844 99 DDYLVFDCPGQIELFT-HVPVLRNFVDHLKSRNFNVCAVYLLDSQFI--TDVTKFISGCMASLSAMV--QLELPHVNILS 173 (247)
Q Consensus 99 p~~lilDEPt~LD~~~-~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~--~d~~~~~s~~l~~~~~~~--~~~~p~i~vls 173 (247)
.++.|.|.|+..+... .+.+...+++.+.+.. +++|++|+... .++..-+..+...+...- ..+.|.+.|+|
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d---~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~N 282 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR---VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVAN 282 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC---EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEE
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHhcc---EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEE
Confidence 5689999999644211 1122224455554422 24445665443 233332222222221111 24789999999
Q ss_pred ccccccch
Q 025844 174 KMDLVTNK 181 (247)
Q Consensus 174 k~dll~~~ 181 (247)
|+|+....
T Consensus 283 K~Dl~~~~ 290 (342)
T 1lnz_A 283 KMDMPEAA 290 (342)
T ss_dssp CTTSTTHH
T ss_pred CccCCCCH
Confidence 99997643
No 245
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.78 E-value=3.7e-05 Score=67.94 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcC
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCET 28 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~ 28 (247)
.+.|.||+|+||||+++.++..+..
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999987643
No 246
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.75 E-value=0.00011 Score=66.04 Aligned_cols=116 Identities=14% Similarity=0.149 Sum_probs=62.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhhh
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~~ 83 (247)
++.|.||+|+|||||+..++......++.+.+...+.... .. .++.+|+....-...... -..
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~-----------~~-----~a~~~g~d~~~l~i~~~~-~~e 138 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALD-----------PV-----YARALGVNTDELLVSQPD-NGE 138 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC-----------HH-----HHHHTTCCGGGCEEECCS-SHH
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChh-----------HH-----HHHHcCCCHHHceeecCC-cHH
Confidence 5788999999999999887765444456777765543211 00 234445432110000000 011
Q ss_pred hHHHHHHHHhhcCCCCCEEEEeCCCcccH----H---------hHHHHHHHHHHHH----HhCCCeEEEEE
Q 025844 84 NLDDWLAEELDNYLDDDYLVFDCPGQIEL----F---------THVPVLRNFVDHL----KSRNFNVCAVY 137 (247)
Q Consensus 84 ~~~~~la~al~~~~~p~~lilDEPt~LD~----~---------~~~~~~~~ll~~l----~~~~~~ii~v~ 137 (247)
.. .++++.+.....++++++|..+.+-+ . .+...+.++++.| ++.+.++++++
T Consensus 139 ~~-l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~n 208 (366)
T 1xp8_A 139 QA-LEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFIN 208 (366)
T ss_dssp HH-HHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred HH-HHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 22 34445554322789999999987321 0 1212223566665 34577776664
No 247
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.74 E-value=1.5e-05 Score=62.49 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 025844 4 AQLVIGPAGSGKSTYCSSLYR 24 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g 24 (247)
+.+|+|||||||||++.+|.-
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999984
No 248
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.73 E-value=0.0002 Score=63.00 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
-++.|.||+|||||||+..++...
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHhHHHHHHHHHH
Confidence 368899999999999999988653
No 249
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.72 E-value=2.4e-05 Score=70.24 Aligned_cols=44 Identities=14% Similarity=0.076 Sum_probs=36.9
Q ss_pred hhhhhHH--HHHHHHhh---------cCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 025844 80 HLEDNLD--DWLAEELD---------NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (247)
Q Consensus 80 ~l~~~~~--~~la~al~---------~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (247)
.+++|++ ++||++++ . +|+++|||||++ ||+..+..++ +++..+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~--~p~iLLLDEp~s~LD~~~~~~l~-~~l~~~ 320 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFG--EDPVLLLDDFTAELDPHRRQYLL-DLAASV 320 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHS--SCCEEEECCGGGCCCHHHHHHHH-HHHHHS
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccC--CCCEEEEeCccccCCHHHHHHHH-HHHHhc
Confidence 5666654 88999999 7 999999999999 9999998887 776665
No 250
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.71 E-value=1.8e-05 Score=62.84 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
|+.++.|+|++||||||+.+.|+..+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357889999999999999999998764
No 251
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.70 E-value=0.00043 Score=58.97 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
-.+.|.||+|+||||+++.+++.+
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 357899999999999999999865
No 252
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.70 E-value=1.8e-05 Score=63.69 Aligned_cols=40 Identities=18% Similarity=0.043 Sum_probs=32.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~ 41 (247)
+.+++|+|++|||||||+..+.+.++..+-+|.+...++.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 4578999999999999999999988766557776665553
No 253
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.70 E-value=1.9e-05 Score=62.07 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
.+++|+|++||||||+++.|+..+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998764
No 254
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.69 E-value=2.6e-05 Score=65.46 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=28.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~ 36 (247)
..++|.||+||||||+++.|++.+.+ ++.+...
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 57899999999999999999999988 7777544
No 255
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.69 E-value=1.9e-05 Score=70.57 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
+.++++|++|+|||||++.++|..
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999999864
No 256
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.68 E-value=0.00031 Score=61.28 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++++|++|+|||||++.+.+-
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999998875
No 257
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.66 E-value=0.00061 Score=62.59 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=34.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCcCC-CceEEEeccCCC
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPA 41 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~-~G~v~i~g~d~~ 41 (247)
+.+++++|++|+||||++-.|+..+... +.+|.+...|+.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~ 140 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVY 140 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 3578889999999999999999888776 668998888874
No 258
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.65 E-value=2.4e-05 Score=61.23 Aligned_cols=20 Identities=40% Similarity=0.590 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 025844 3 YAQLVIGPAGSGKSTYCSSL 22 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l 22 (247)
.+++|.||+||||||+++.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999999
No 259
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.65 E-value=0.0012 Score=59.80 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++++|+.|+|||||++.+.+.
T Consensus 12 ~~I~iiG~~~~GKSTLi~~L~~~ 34 (405)
T 2c78_A 12 VNVGTIGHVDHGKTTLTAALTYV 34 (405)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHhh
Confidence 56899999999999999999874
No 260
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.65 E-value=2.1e-05 Score=62.52 Aligned_cols=24 Identities=38% Similarity=0.443 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
..++|+|++||||||+.+.|+..+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368899999999999999999754
No 261
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.63 E-value=0.0005 Score=66.42 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=26.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC--CCceE
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET--VRRTM 33 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~--~~G~v 33 (247)
..++|+|++|+|||||++.+.+...+ ..|+|
T Consensus 10 ~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V 42 (665)
T 2dy1_A 10 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRV 42 (665)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred cEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence 46899999999999999999977654 56766
No 262
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.62 E-value=2.9e-05 Score=63.21 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
.+++|+||+||||||+.+.|++.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999865
No 263
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.62 E-value=8.4e-05 Score=67.88 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETV 29 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~ 29 (247)
-+++|+|||||||||++++|++++.+.
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 468999999999999999999987664
No 264
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.61 E-value=0.00017 Score=62.02 Aligned_cols=24 Identities=29% Similarity=0.671 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
..+.|.||+|+||||+++.+++..
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 468899999999999999999865
No 265
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.60 E-value=3.1e-05 Score=61.05 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
|+..++|.|++||||||+.+.|+..+
T Consensus 1 m~~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 1 MTEPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCCCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 66789999999999999999998754
No 266
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.59 E-value=2.6e-05 Score=63.83 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
.+++|+||+||||||+++.|+..++
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 5688999999999999999998764
No 267
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.59 E-value=5.1e-05 Score=59.45 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
+.++|+|++|+|||||++.++|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 678999999999999999999864
No 268
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.58 E-value=5.2e-05 Score=69.55 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=28.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc------------CCCceEEEecc
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE------------TVRRTMHIVNL 38 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~------------~~~G~v~i~g~ 38 (247)
+-++|+|+||+|||||++.++|... +..|.+.++|.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~ 228 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR 228 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE
Confidence 5689999999999999999999854 44566666554
No 269
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.57 E-value=4e-05 Score=61.22 Aligned_cols=25 Identities=40% Similarity=0.659 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
...++|+|++||||||+++.|+..+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998643
No 270
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.57 E-value=4.4e-05 Score=60.97 Aligned_cols=26 Identities=35% Similarity=0.603 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
|+.+++|.|++||||||+++.|+..+
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998754
No 271
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.56 E-value=9.3e-05 Score=66.35 Aligned_cols=54 Identities=13% Similarity=0.184 Sum_probs=40.7
Q ss_pred HhhhhhHH--H------HHHHHhhcCCC-CCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025844 79 EHLEDNLD--D------WLAEELDNYLD-DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (247)
Q Consensus 79 ~~l~~~~~--~------~la~al~~~~~-p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (247)
..+++|++ + ++|+++.. + |+++|||||++ ||+..+..+. ++++.+.+ +.+++++
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~--~~~~~lllDEp~~~LD~~~~~~l~-~~l~~~~~-~~~vi~~ 342 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIG--NRVECIILDEPTVYLDENRRAKLA-EIFRKVKS-IPQMIII 342 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHS--SCCSEEEEESTTTTCCHHHHHHHH-HHHHHCCS-CSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhc--CCCCeEEEeCCCCcCCHHHHHHHH-HHHHHhcc-CCeEEEE
Confidence 45666654 2 45778887 8 99999999999 9999998888 77777643 3456554
No 272
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.56 E-value=5.6e-05 Score=61.02 Aligned_cols=24 Identities=33% Similarity=0.292 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhC
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+.+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 478999999999999999999985
No 273
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.56 E-value=1.6e-05 Score=67.28 Aligned_cols=25 Identities=40% Similarity=0.521 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
+++++|.||+||||||+++.|++.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999654
No 274
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.55 E-value=4.2e-05 Score=62.03 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
|+.+++|.|++||||||+.+.|++.+
T Consensus 1 m~~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 1 MRGIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 65689999999999999999999854
No 275
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.55 E-value=1e-05 Score=66.14 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=26.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEE
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i 35 (247)
+++|.|++||||||+++.|+..+...+..+.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~ 33 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVAT 33 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 68899999999999999999988765445543
No 276
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.55 E-value=0.00021 Score=65.39 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++++|++|+|||||++.+.|-
T Consensus 176 ~ki~lvG~~nvGKSSLin~l~~~ 198 (436)
T 2hjg_A 176 IQFCLIGRPNVGKSSLVNAMLGE 198 (436)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Confidence 56899999999999999999975
No 277
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.55 E-value=4.8e-05 Score=62.64 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYR 24 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g 24 (247)
+++++|.|++||||||+++.|++
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999998
No 278
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.54 E-value=3.6e-05 Score=65.28 Aligned_cols=35 Identities=23% Similarity=0.195 Sum_probs=27.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEecc
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~ 38 (247)
+..++++|++||||||+.+.|++.+. .+.+.+++-
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D 66 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGD 66 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecH
Confidence 46789999999999999999998764 244555553
No 279
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.53 E-value=0.00019 Score=66.15 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYR 24 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g 24 (247)
...++|+|++|+|||||++.+.|
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35789999999999999999987
No 280
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.53 E-value=0.00017 Score=55.70 Aligned_cols=42 Identities=10% Similarity=-0.012 Sum_probs=28.9
Q ss_pred CCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCeEEEEEecc
Q 025844 98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLD 140 (247)
Q Consensus 98 ~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d 140 (247)
+..++++||...++...+..+. ++++.....+..+|++.-.+
T Consensus 75 ~~~~l~lDei~~l~~~~q~~Ll-~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIAQYSRNIQTGIT-FIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECTTCCHHHHHHHH-HHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeChHHCCHHHHHHHH-HHHHhCCCCCEEEEEecCCC
Confidence 5679999999998888777766 66665433456666554333
No 281
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.53 E-value=0.00028 Score=64.62 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++++|+.|+|||||++.+.+.
T Consensus 7 ~~I~iiG~~~~GKSTLi~~Ll~~ 29 (435)
T 1jny_A 7 LNLIVIGHVDHGKSTLVGRLLMD 29 (435)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHHHHH
Confidence 56899999999999999999853
No 282
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.53 E-value=4.3e-05 Score=60.98 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
+-++|+|++|+|||||++.++|...
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~ 27 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKK 27 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC--
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5689999999999999999998643
No 283
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.52 E-value=9e-05 Score=66.70 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 025844 4 AQLVIGPAGSGKSTYCSSLY 23 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~ 23 (247)
.++++|+.++|||||++.|.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~ 42 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG 42 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999887
No 284
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.52 E-value=0.00064 Score=66.01 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
.+-++|+|+.|+|||||++.+.|.-
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3678999999999999999999853
No 285
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.51 E-value=8.6e-05 Score=66.65 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 025844 4 AQLVIGPAGSGKSTYCSSLYR 24 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g 24 (247)
+++|+|||||||||++++|++
T Consensus 28 ~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 789999999999999999997
No 286
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.51 E-value=4.1e-05 Score=61.22 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
|+.+++|+|++||||||+.+.|+..+
T Consensus 1 M~~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 1 MAPKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp -CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 66679999999999999999998643
No 287
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.51 E-value=0.00018 Score=70.96 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET 28 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~ 28 (247)
-.++|+|||||||||+++++++.+..
T Consensus 239 ~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp CEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 36899999999999999999998743
No 288
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.51 E-value=0.00011 Score=61.74 Aligned_cols=40 Identities=8% Similarity=-0.067 Sum_probs=30.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~ 41 (247)
+..+.+.|+.|+||||++-.++..+...+-+|.+...|+.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q 45 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETH 45 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence 4678899999999999977777665544447877777763
No 289
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.50 E-value=5.5e-05 Score=60.37 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCET 28 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~ 28 (247)
..++|.|++||||||+++.|+..+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46889999999999999999987653
No 290
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.50 E-value=0.00017 Score=63.15 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=24.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc-CCCceEE
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMH 34 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~-~~~G~v~ 34 (247)
-.+.|.||+|+|||+|+++++..+. ..+..+.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~ 185 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTT 185 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEE
Confidence 3578999999999999999998665 4333443
No 291
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.50 E-value=5.9e-05 Score=60.30 Aligned_cols=25 Identities=28% Similarity=0.585 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
+.+++|.|++||||||+++.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999998643
No 292
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.50 E-value=6.1e-05 Score=60.33 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
+..++|+|++||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4688999999999999999998754
No 293
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.50 E-value=5.4e-05 Score=68.04 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCc
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
.++|+|++|||||||++.++|...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 489999999999999999998754
No 294
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.49 E-value=9e-05 Score=65.98 Aligned_cols=35 Identities=11% Similarity=0.152 Sum_probs=28.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEecc
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~ 38 (247)
.+.|.|++|+|||||+..++......++.|.+...
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 57899999999999999988766555667766654
No 295
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.49 E-value=5.9e-05 Score=64.14 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
.+++|+||+||||||+.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 468899999999999999999754
No 296
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.49 E-value=5.7e-05 Score=59.97 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+.++|+|++|+|||||++.++|.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 67899999999999999999974
No 297
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.48 E-value=5.6e-05 Score=62.18 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
-+.+|+|||||||||++.+|.-.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHH
Confidence 36789999999999999998743
No 298
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.46 E-value=0.00031 Score=64.31 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYR 24 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g 24 (247)
...++|+|++|+|||||++.++|
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~ 25 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAG 25 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46799999999999999999986
No 299
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.46 E-value=6.5e-05 Score=60.57 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCc
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
.++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 578999999999999999998654
No 300
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.45 E-value=5.5e-05 Score=60.88 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
+.+++|+|++||||||+++.|+..+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999998754
No 301
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.44 E-value=0.00086 Score=56.12 Aligned_cols=23 Identities=26% Similarity=0.611 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
.+.|.||+|+||||+++.++..+
T Consensus 41 ~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999864
No 302
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.44 E-value=6.2e-05 Score=68.00 Aligned_cols=30 Identities=30% Similarity=0.381 Sum_probs=25.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEE
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i 35 (247)
-+++|+||||||||||+++++|.. +|.+..
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~ 199 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELC---GGKALN 199 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH---CCEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc---CCcEEE
Confidence 478999999999999999999853 576654
No 303
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.44 E-value=7.3e-05 Score=59.66 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
+..++++||+||||||+.+.|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999998654
No 304
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.43 E-value=7.5e-05 Score=59.53 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
.+++|.|++||||||+++.|+..+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999998654
No 305
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.43 E-value=0.00055 Score=62.99 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++++|.+|+|||||++.+.|.
T Consensus 196 ~ki~ivG~~~vGKSslin~l~~~ 218 (456)
T 4dcu_A 196 IQFCLIGRPNVGKSSLVNAMLGE 218 (456)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred ceeEEecCCCCCHHHHHHHHhCC
Confidence 46799999999999999999964
No 306
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.43 E-value=9.7e-05 Score=59.89 Aligned_cols=31 Identities=29% Similarity=0.223 Sum_probs=25.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEE
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH 34 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~ 34 (247)
..++|.|++||||||+++.|+..+... |.+.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~-g~~~ 35 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK-RDVY 35 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT-SCEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc-CCEE
Confidence 688999999999999999999876653 3443
No 307
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.41 E-value=0.00014 Score=67.57 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|++|+|||||++.+.|-
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999864
No 308
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.40 E-value=9.3e-05 Score=58.55 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
+-++|+|++|+|||||++.++|..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999999853
No 309
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.40 E-value=7.2e-05 Score=63.80 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
..++|+|++||||||+++.|++.+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 568999999999999999999865
No 310
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.38 E-value=7.6e-05 Score=67.81 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhC
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
...++|+|+||+|||||++.++|.
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 356899999999999999999987
No 311
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.37 E-value=4e-05 Score=72.36 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=29.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEec
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g 37 (247)
+++++||||+||||+++++++.+.+..|.+.+.+
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 6889999999999999999999977766665544
No 312
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.36 E-value=0.00011 Score=63.48 Aligned_cols=24 Identities=42% Similarity=0.540 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHh
Q 025844 1 MGYAQLVIGPAGSGKSTYCSSLYR 24 (247)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g 24 (247)
|+.++.|+|++||||||+.+.|+.
T Consensus 1 M~~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 1 MKKIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 778899999999999999999997
No 313
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.36 E-value=0.00081 Score=62.39 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++++|+.|+|||||++.|.+.
T Consensus 34 ~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 34 LSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp EEEEEESCGGGTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 56889999999999999999865
No 314
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.36 E-value=0.00011 Score=63.73 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=25.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~ 36 (247)
+..+.|.||+||||||+++.++..++ .+.+.+.
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is 65 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVID 65 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEe
Confidence 46789999999999999999987543 2445444
No 315
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.36 E-value=0.0014 Score=62.74 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.|.+-
T Consensus 168 lkV~ivG~~n~GKSTLin~Ll~~ 190 (611)
T 3izq_1 168 LSFVVLGHVDAGKSTLMGRLLYD 190 (611)
T ss_dssp CEEEEECCSSSCHHHHHHHHHSC
T ss_pred eEEEEEECCCCCHHHHHHHHHHh
Confidence 56899999999999999999865
No 316
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.35 E-value=9.3e-05 Score=66.62 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=29.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEec
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g 37 (247)
-++|+||+||||||+++.+.+...+.++.+.+.+
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 4689999999999999999988888888887754
No 317
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.34 E-value=0.00011 Score=61.54 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
..+++|+|++||||||+++.|++.+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3679999999999999999999743
No 318
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.33 E-value=0.00018 Score=62.96 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCc
Q 025844 5 QLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
+.|.||+|+||||+++.+++.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998764
No 319
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.33 E-value=0.00017 Score=64.84 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhC
Q 025844 1 MGYAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
|.+-++|+|.+|+|||||++.++|-
T Consensus 1 m~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 1 MGFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Confidence 6678999999999999999999983
No 320
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.33 E-value=0.00012 Score=59.37 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
+++++|+|++||||||+++.|+..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998754
No 321
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.32 E-value=0.00014 Score=58.86 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
...++|.|+.||||||+++.|+..+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999887
No 322
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.31 E-value=0.00013 Score=58.53 Aligned_cols=24 Identities=33% Similarity=0.620 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
.+++|+|++||||||+++.|+..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998754
No 323
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.31 E-value=0.00017 Score=64.28 Aligned_cols=27 Identities=19% Similarity=0.460 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
|+.+++|+||+||||||+.+.|+..+.
T Consensus 6 m~~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 6 KPFLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCceEEEECCCcCcHHHHHHHHHHHcC
Confidence 456899999999999999999998664
No 324
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.31 E-value=0.00012 Score=58.68 Aligned_cols=30 Identities=30% Similarity=0.212 Sum_probs=23.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceE
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTM 33 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v 33 (247)
.++|.|+.||||||+++.|+..++..+-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v 31 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKV 31 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-E
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 589999999999999999998775433334
No 325
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.30 E-value=0.0036 Score=54.87 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
-.+.|.||+|+||||+++.++..+
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 468899999999999999999875
No 326
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.30 E-value=0.00013 Score=58.57 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
..++|+|++||||||+.+.|+..
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999975
No 327
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.29 E-value=0.00022 Score=59.78 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=24.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~ 36 (247)
.++.+.||.||||||++-.++.-+...+..|.+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 4678899999999997766665544444466665
No 328
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.28 E-value=0.00012 Score=59.59 Aligned_cols=22 Identities=36% Similarity=0.700 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhCC
Q 025844 5 QLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l 26 (247)
++|+||+|||||||++.|..-.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 5799999999999999987654
No 329
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.28 E-value=0.00014 Score=61.38 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
+++++|.|++||||||+++.|+..+.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 47899999999999999999988543
No 330
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.28 E-value=0.00015 Score=58.95 Aligned_cols=26 Identities=31% Similarity=0.212 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
...++|.|+.||||||+++.|+..+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 36799999999999999999997654
No 331
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.27 E-value=0.00014 Score=59.57 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
.++|+||+||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997643
No 332
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.27 E-value=0.00016 Score=58.64 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
+.+++|.|++||||||+++.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999998654
No 333
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.26 E-value=0.00028 Score=56.74 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhCC
Q 025844 5 QLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l 26 (247)
+.|.||+|+||||+++.++..+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998764
No 334
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.26 E-value=6.1e-05 Score=66.44 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=28.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC
Q 025844 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (247)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d 39 (247)
+.+.||+|+||||+++++++.+.+..+.+.+.+.+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~ 83 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN 83 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc
Confidence 68999999999999999999987766655444443
No 335
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.25 E-value=0.0011 Score=58.49 Aligned_cols=117 Identities=12% Similarity=0.147 Sum_probs=59.4
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCcC-CCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhh
Q 025844 4 AQLVIGPAGSGKSTYCSSLY-RHCET-VRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~-g~l~~-~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l 81 (247)
++.|.||+|||||||+-.++ ...+. .+|.+.+..-.- .+.+ ..++++|+....-...... -
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~-----s~~~-----------~ra~~lGvd~d~llv~~~~-~ 92 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF-----GITP-----------AYLRSMGVDPERVIHTPVQ-S 92 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC-----CCCH-----------HHHHHTTCCGGGEEEEECS-B
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc-----hhhH-----------HHHHHhCCCHHHeEEEcCC-C
Confidence 57899999999999965554 33332 145555543211 0111 1356667654321111100 1
Q ss_pred hhhHHHHHHHHh--hcCCCCCEEEEeCCCcccH----H-----------hHHHHHHHHHHH----HHhCCCeEEEEE
Q 025844 82 EDNLDDWLAEEL--DNYLDDDYLVFDCPGQIEL----F-----------THVPVLRNFVDH----LKSRNFNVCAVY 137 (247)
Q Consensus 82 ~~~~~~~la~al--~~~~~p~~lilDEPt~LD~----~-----------~~~~~~~~ll~~----l~~~~~~ii~v~ 137 (247)
.+.+..+++..+ +....|+++++|--+++=+ . .+...+.+.+++ +++.+.+++++.
T Consensus 93 ~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tN 169 (333)
T 3io5_A 93 LEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAIN 169 (333)
T ss_dssp HHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 111113344454 3323799999998877311 0 222222243433 456788888874
No 336
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.24 E-value=0.00015 Score=59.91 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
++.|+||+||||+|.++.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999754
No 337
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.24 E-value=0.00016 Score=57.67 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCc
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
.++|.|+.||||||+++.|+..++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998664
No 338
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.23 E-value=9.6e-05 Score=58.70 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=17.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
.+++|.|++||||||+.+.|+..+
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999998654
No 339
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.23 E-value=0.00016 Score=59.20 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
.++|+||+||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998654
No 340
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.22 E-value=0.00022 Score=66.72 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=30.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~ 40 (247)
-.++|+||||+|||||++++++... .+.+.+.+.+.
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~ 100 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF 100 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHH
Confidence 3589999999999999999999875 57788877543
No 341
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.22 E-value=0.00016 Score=59.69 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
..++|+||+||||||+++.|+..+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 568899999999999999998754
No 342
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.21 E-value=0.00017 Score=57.37 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
..++|+|++||||||+++.++..+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 357899999999999999998553
No 343
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.21 E-value=0.00019 Score=59.53 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
..++|+|++||||||+++.|+..+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 578999999999999999999654
No 344
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.20 E-value=0.00018 Score=60.59 Aligned_cols=25 Identities=24% Similarity=0.555 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
-.+.|.||+|+||||+++++++.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcC
Confidence 3578999999999999999998764
No 345
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.19 E-value=0.0049 Score=60.38 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
-++|+|..+||||||++.|.|.-
T Consensus 53 ~I~vvG~~saGKSSllnaL~g~~ 75 (772)
T 3zvr_A 53 QIAVVGGQSAGKSSVLENFVGRD 75 (772)
T ss_dssp EEEEEECTTTCHHHHHHHHHSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999953
No 346
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.19 E-value=0.00021 Score=58.40 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
++++|+|+.||||||+.+.++..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999999975
No 347
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.18 E-value=0.00021 Score=55.91 Aligned_cols=23 Identities=43% Similarity=0.323 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998754
No 348
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.18 E-value=0.00021 Score=61.62 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYR 24 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g 24 (247)
+++++|.|++||||||+++.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999995
No 349
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.16 E-value=0.00017 Score=61.36 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
+..++|+|++||||||+.+.|+..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 36789999999999999999997644
No 350
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.16 E-value=0.00022 Score=58.67 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
..++|+|++||||||+++.|+..+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 568899999999999999998754
No 351
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.16 E-value=0.00023 Score=59.92 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
++.++|+||+||||||+++.|+..+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998654
No 352
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.15 E-value=0.00028 Score=57.05 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYR 24 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (247)
+-++++|++|+|||||++.+.+
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5689999999999999999986
No 353
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.15 E-value=0.00032 Score=57.36 Aligned_cols=37 Identities=19% Similarity=0.159 Sum_probs=28.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~ 40 (247)
..++|+|+.|||||||++.+++..... .++.+.+.++
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~ 67 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDV 67 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCC
Confidence 578999999999999999999875433 4555555444
No 354
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.14 E-value=0.00056 Score=67.20 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcC
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCET 28 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~ 28 (247)
.++|+||+||||||++..+.+...+
T Consensus 111 ~vii~gpTGSGKTtllp~ll~~~~~ 135 (773)
T 2xau_A 111 IMVFVGETGSGKTTQIPQFVLFDEM 135 (773)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcc
Confidence 5789999999999998888665433
No 355
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.14 E-value=0.00023 Score=57.82 Aligned_cols=26 Identities=27% Similarity=0.227 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
..+++|.|+.||||||+++.|+..+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36799999999999999999997654
No 356
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.14 E-value=0.0028 Score=55.39 Aligned_cols=34 Identities=9% Similarity=0.178 Sum_probs=24.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEec
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g 37 (247)
.+.|.|++|+|||||+..++...-..++.+.+..
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 5789999999999999888754333334454443
No 357
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.14 E-value=0.00027 Score=56.68 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++++|++|+|||||++.+.+-
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999973
No 358
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.13 E-value=0.0026 Score=55.44 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYR 24 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (247)
-++.|.||+|||||||+..++.
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998885
No 359
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.0051 Score=55.90 Aligned_cols=25 Identities=24% Similarity=0.577 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
-++.+.||+|+|||++.+++++...
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred CceEEeCCCCCCHHHHHHHHHHhhC
Confidence 4688999999999999999998653
No 360
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.12 E-value=0.0028 Score=54.37 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCc
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
.+.|.||+|+||||+++.++..+.
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999998887664
No 361
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.11 E-value=0.00025 Score=59.14 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
-++.|+||+||||||.++.|+..+
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999654
No 362
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.09 E-value=0.00021 Score=64.02 Aligned_cols=29 Identities=34% Similarity=0.502 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCc
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR 31 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G 31 (247)
+-++|+|++|+|||||++.|.|......+
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~ 66 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDLYPER 66 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC----
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence 56799999999999999999887544433
No 363
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.08 E-value=0.0003 Score=54.24 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++++|+.|+|||||++.+.+-
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 56899999999999999999864
No 364
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.08 E-value=0.00028 Score=58.47 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
.++|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998754
No 365
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.07 E-value=0.00031 Score=55.18 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
.+++|.|+.||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998753
No 366
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.06 E-value=8.5e-05 Score=64.60 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=19.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
+++++|.||+||||||+++.++..+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 36899999999999999999997553
No 367
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.05 E-value=0.00035 Score=61.78 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
|+..++|+||+||||||+.+.|+..+.
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999998653
No 368
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.04 E-value=0.004 Score=54.82 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=26.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEec
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g 37 (247)
.+.|.||+|+||||+++.++..+......+.+.+
T Consensus 72 ~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~ 105 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence 6889999999999999999988764434444443
No 369
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.03 E-value=0.00033 Score=57.43 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
.++|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999998754
No 370
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.03 E-value=0.0018 Score=69.23 Aligned_cols=119 Identities=16% Similarity=0.171 Sum_probs=64.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~ 82 (247)
-++.|.||+|+|||||+..++--....++.+.+...+-. +... .++.+|+....-.+.+.+ ..
T Consensus 1428 ~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~---------------~~~l-~a~~~G~dl~~l~v~~~~-~~ 1490 (2050)
T 3cmu_A 1428 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA---------------LDPI-YARKLGVDIDNLLCSQPD-TG 1490 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC---------------CCHH-HHHHTTCCTTTCEEECCS-SH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc---------------cCHH-HHHHcCCCchhceeecCC-hH
Confidence 468899999999999998887654455666666532110 0000 034444322111111111 11
Q ss_pred hhHHHHHHHHhhcCCCCCEEEEeCCCcccHHh-------------H----HHHHHHHHHHHHhCCCeEEEEEec
Q 025844 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFT-------------H----VPVLRNFVDHLKSRNFNVCAVYLL 139 (247)
Q Consensus 83 ~~~~~~la~al~~~~~p~~lilDEPt~LD~~~-------------~----~~~~~~ll~~l~~~~~~ii~v~l~ 139 (247)
+.. .++++.++....|+++++||-..+-+.. . .+.+.++...+.+.+.+++.++..
T Consensus 1491 E~~-l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq~ 1563 (2050)
T 3cmu_A 1491 EQA-LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 1563 (2050)
T ss_dssp HHH-HHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECE
T ss_pred HHH-HHHHHHHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEccc
Confidence 122 4445555432389999999987633321 2 223335555555667888777543
No 371
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.02 E-value=0.00037 Score=54.22 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|++|+|||||++.+.+-
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 56899999999999999999864
No 372
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.99 E-value=0.00034 Score=54.04 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++++|++|+|||||++.+.|.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEEECCCCCCHHHHHHHHcCc
Confidence 56899999999999999999764
No 373
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.99 E-value=0.0004 Score=57.18 Aligned_cols=24 Identities=33% Similarity=0.607 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
..++|+|++||||||+++.|+..+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999998765
No 374
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.99 E-value=0.00042 Score=59.64 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
.+.++++|++|+|||||++.++|..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC
Confidence 4678999999999999999999853
No 375
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.98 E-value=0.00041 Score=53.55 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 56899999999999999999974
No 376
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.98 E-value=0.00045 Score=53.48 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++++|++|+|||||++.+.+.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 56899999999999999999864
No 377
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=96.97 E-value=0.0027 Score=64.80 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++++|+.|+|||||++.|.+.
T Consensus 297 lnIvIIGhvDvGKSTLInrLt~~ 319 (1289)
T 3avx_A 297 VNVGTIGHVDHGKTTLTAAITTV 319 (1289)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Confidence 56899999999999999999874
No 378
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.97 E-value=0.00037 Score=55.32 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++++|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999863
No 379
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.97 E-value=0.00047 Score=53.21 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
+-++++|+.|+|||||++.+.+-.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 568999999999999999998753
No 380
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.97 E-value=0.00044 Score=53.31 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++++|+.|+|||||++.+.+-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999864
No 381
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.97 E-value=0.00045 Score=53.44 Aligned_cols=23 Identities=13% Similarity=0.361 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 56899999999999999999875
No 382
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.96 E-value=0.00047 Score=53.82 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999864
No 383
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.95 E-value=0.00081 Score=53.60 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|++|+|||||++.+.+-
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 67899999999999999877753
No 384
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.94 E-value=0.00054 Score=54.30 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
+-++|+|+.|+|||||++.+.+-.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 668999999999999999999863
No 385
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.93 E-value=0.0005 Score=54.13 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999864
No 386
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.93 E-value=0.00043 Score=56.72 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
+++++|+|++||||||+.+.++..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998754
No 387
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.93 E-value=0.00056 Score=52.92 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYR 24 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (247)
+-++++|+.|+|||||++.+.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 6789999999999999999976
No 388
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.92 E-value=0.00044 Score=53.95 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999863
No 389
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.92 E-value=0.00051 Score=52.91 Aligned_cols=22 Identities=18% Similarity=0.471 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYR 24 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (247)
+-++++|+.|+|||||++.+.+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 5689999999999999999986
No 390
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.92 E-value=0.0027 Score=55.24 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCc
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRR 31 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G 31 (247)
.+.|.||+|+|||++++.+.......++
T Consensus 27 ~vLi~Ge~GtGKt~lAr~i~~~~~~~~~ 54 (304)
T 1ojl_A 27 TVLIHGDSGTGKELVARALHACSARSDR 54 (304)
T ss_dssp CEEEESCTTSCHHHHHHHHHHHSSCSSS
T ss_pred cEEEECCCCchHHHHHHHHHHhCcccCC
Confidence 4789999999999999999987654333
No 391
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=96.91 E-value=0.0012 Score=54.62 Aligned_cols=37 Identities=27% Similarity=0.351 Sum_probs=32.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCC
Q 025844 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (247)
Q Consensus 5 ~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~ 41 (247)
++|-|.-|+||||+.-.++..+...+.+|.+...|+.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 39 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD 39 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4558999999999999999988877778999999985
No 392
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.91 E-value=0.00045 Score=61.83 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 025844 3 YAQLVIGPAGSGKSTYCSSLY 23 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~ 23 (247)
-+.+|+|||||||||++.+|+
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 367899999999999999987
No 393
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.91 E-value=0.00073 Score=55.53 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=19.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHH
Q 025844 1 MGYAQLVIGPAGSGKSTYCSSL 22 (247)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l 22 (247)
|++++.+.|++||||||++..+
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~ 25 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSM 25 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred ceeEEEEEeCCCCCHHHHHHHH
Confidence 5678999999999999998664
No 394
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.91 E-value=0.00032 Score=55.20 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYR 24 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (247)
+-++|+|++|+|||||++.+.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5689999999999999998873
No 395
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.89 E-value=0.00055 Score=53.29 Aligned_cols=23 Identities=13% Similarity=0.385 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999863
No 396
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.88 E-value=0.00061 Score=53.15 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 56899999999999999999863
No 397
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.0022 Score=58.91 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
-++.+.||+|+|||++.+++++...
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 5789999999999999999998754
No 398
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.86 E-value=0.0006 Score=54.09 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++++|+.|+|||||++.+.+-
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 67899999999999999999873
No 399
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.86 E-value=0.0006 Score=56.75 Aligned_cols=24 Identities=29% Similarity=0.606 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
..++|+|+.||||||+.+.|+..+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 568899999999999999999764
No 400
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.86 E-value=0.00061 Score=53.02 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999974
No 401
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.86 E-value=0.00071 Score=55.43 Aligned_cols=36 Identities=22% Similarity=0.239 Sum_probs=26.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d 39 (247)
+.++|+|+.|+|||||++.+++..... ..+...+.+
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d 74 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGD 74 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECC
Confidence 678999999999999999998765443 344444444
No 402
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.85 E-value=0.00062 Score=53.67 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999974
No 403
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.85 E-value=0.00066 Score=54.03 Aligned_cols=23 Identities=30% Similarity=0.608 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 56899999999999999999874
No 404
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.83 E-value=0.00061 Score=52.43 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 025844 4 AQLVIGPAGSGKSTYCSSLYR 24 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g 24 (247)
-++++|+.|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999999986
No 405
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.83 E-value=0.00058 Score=59.22 Aligned_cols=25 Identities=28% Similarity=0.636 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
..+.|.||+|+||||+++++++.+.
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCcCHHHHHHHHHHHhC
Confidence 3688999999999999999998753
No 406
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.83 E-value=0.00079 Score=53.30 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
+-++|+|++|+|||||++.+.|...
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 5689999999999999999998654
No 407
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.0027 Score=58.12 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
-++.+.||+|+|||++++++++.+.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998653
No 408
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.0022 Score=58.85 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
+-++.+.||+|+|||++.+++++...
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 35788999999999999999998753
No 409
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.81 E-value=0.00076 Score=52.71 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++++|+.|+|||||++.+.+-
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 56899999999999999999874
No 410
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.79 E-value=0.00073 Score=53.22 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999864
No 411
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.79 E-value=0.00073 Score=53.50 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++++|++|+|||||++.+.+-
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999874
No 412
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.78 E-value=0.0034 Score=58.41 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
-.+.|.||+|+|||+++++++...
T Consensus 239 ~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CcEEEECcCCCCHHHHHHHHHHHh
Confidence 358899999999999999998764
No 413
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.77 E-value=0.00077 Score=53.22 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++++|++|+|||||++.+.+-
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999863
No 414
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.77 E-value=0.0013 Score=54.35 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=23.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh-CCcCCCceEEEecc
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYR-HCETVRRTMHIVNL 38 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g-~l~~~~G~v~i~g~ 38 (247)
-.+.|.|++|+|||||+.-++- .....++.+.+...
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 3678999999999999876542 12222345655543
No 415
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.76 E-value=0.00085 Score=52.74 Aligned_cols=23 Identities=30% Similarity=0.664 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999854
No 416
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.76 E-value=0.0061 Score=53.08 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
.+.|.||+|+||||+++.++...
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 417
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.75 E-value=0.00091 Score=53.24 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYR 24 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (247)
+-++|+|+.|+|||||++.+.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 6789999999999999999987
No 418
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.75 E-value=0.00083 Score=52.61 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCc
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
.+.|.||+|+||||+++.++..+.
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999987654
No 419
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.75 E-value=0.0009 Score=52.34 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 56899999999999999999864
No 420
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.75 E-value=0.00087 Score=53.77 Aligned_cols=23 Identities=17% Similarity=0.468 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 56899999999999999999875
No 421
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.75 E-value=0.00081 Score=53.39 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999864
No 422
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.74 E-value=0.0009 Score=56.35 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|++|||||||++.+.|.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999974
No 423
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.73 E-value=0.00097 Score=52.84 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYR 24 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (247)
+-++++|+.|+|||||++.+.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5689999999999999999995
No 424
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.73 E-value=0.00087 Score=53.21 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 56899999999999999999863
No 425
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.72 E-value=0.00095 Score=52.34 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++++|+.|+|||||++.+.+-
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999863
No 426
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.72 E-value=0.0031 Score=55.75 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
++.|.||+|+|||||+..++..
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 4679999999999999999853
No 427
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.71 E-value=0.00098 Score=53.21 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 56899999999999999999874
No 428
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.71 E-value=0.001 Score=53.00 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 56899999999999999999864
No 429
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.70 E-value=0.045 Score=49.95 Aligned_cols=34 Identities=9% Similarity=0.210 Sum_probs=25.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCC-CceEEEec
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVN 37 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~-~G~v~i~g 37 (247)
.+.|.|++|+|||||+..++...... +..|.+..
T Consensus 202 l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s 236 (444)
T 2q6t_A 202 LNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS 236 (444)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 57899999999999999988765432 33555543
No 430
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.70 E-value=0.00095 Score=56.26 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|++|+|||||++.+.|-
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 56899999999999999999985
No 431
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.69 E-value=0.00072 Score=60.79 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+.++|+|++|+|||||++.+++.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999986
No 432
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.69 E-value=0.00079 Score=57.51 Aligned_cols=23 Identities=39% Similarity=0.699 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|++|+|||||++.|.+-
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 67899999999999999998764
No 433
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.68 E-value=0.00027 Score=66.10 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+.+|+|+|||||||++.+|..+
T Consensus 62 ~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 62 FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp EEEEEESHHHHHHHHTHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 6789999999999999999765
No 434
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.68 E-value=0.00098 Score=53.46 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999864
No 435
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.68 E-value=0.00068 Score=54.63 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|++|+|||||++.++|.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 56899999999999999998653
No 436
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.68 E-value=0.00096 Score=56.76 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++++|++|+|||||++.++|-
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 56899999999999999999974
No 437
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.68 E-value=0.00094 Score=52.71 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 66899999999999999999974
No 438
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.67 E-value=0.0011 Score=58.30 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
+..++|+||+|||||||...++..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999999765
No 439
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.67 E-value=0.001 Score=52.21 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYR 24 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (247)
+-++|+|+.|+|||||++.+.+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 5689999999999999999984
No 440
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.66 E-value=0.0011 Score=53.34 Aligned_cols=23 Identities=13% Similarity=0.249 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 56899999999999999999974
No 441
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.66 E-value=0.00079 Score=53.53 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCG
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999864
No 442
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.66 E-value=0.001 Score=53.97 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcC
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCET 28 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~ 28 (247)
.+.|.||+|+||||+++.++..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 6789999999999999999876543
No 443
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.66 E-value=0.0011 Score=52.51 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999863
No 444
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.65 E-value=0.001 Score=59.52 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
..++|+||+||||||+.++|++.+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3588999999999999999998754
No 445
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.65 E-value=0.0011 Score=51.82 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++++|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999863
No 446
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.65 E-value=0.0011 Score=52.56 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999874
No 447
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.64 E-value=0.0012 Score=53.02 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 66899999999999999999874
No 448
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.64 E-value=0.0012 Score=52.65 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 56899999999999999999874
No 449
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.64 E-value=0.0011 Score=52.74 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999873
No 450
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.63 E-value=0.0013 Score=52.65 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999973
No 451
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.0036 Score=57.79 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
-++.+.||+|+|||++.+++++...
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred CceEeeCCCCCcHHHHHHHHHhccC
Confidence 4688999999999999999998654
No 452
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.63 E-value=0.0012 Score=54.82 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=27.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEE
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i 35 (247)
..+++.|+.||||||+++.|+..+...+-++..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~ 39 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQL 39 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccc
Confidence 578899999999999999999988765445543
No 453
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.62 E-value=0.0011 Score=54.59 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYR 24 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (247)
+-++|+|+.|+|||||++.+.+
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 6789999999999999999986
No 454
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.62 E-value=0.0011 Score=52.75 Aligned_cols=23 Identities=17% Similarity=0.314 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++++|++|+|||||++.+.+-
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 56899999999999999999874
No 455
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.62 E-value=0.0012 Score=53.13 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999874
No 456
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.62 E-value=0.0012 Score=52.97 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|++|+|||||++.+.|.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999863
No 457
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.61 E-value=0.0012 Score=53.59 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|++|+|||||++.+.+-
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 56899999999999999999864
No 458
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.61 E-value=0.0013 Score=53.02 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999864
No 459
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.60 E-value=0.0012 Score=53.08 Aligned_cols=23 Identities=39% Similarity=0.637 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 56899999999999999999853
No 460
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.0039 Score=57.09 Aligned_cols=25 Identities=16% Similarity=0.383 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
-++.+.||+|+|||++.+++++...
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred CCCceECCCCchHHHHHHHHHHHhC
Confidence 5789999999999999999998754
No 461
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.58 E-value=0.0012 Score=53.64 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|++|+|||||++.+.+-
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999975
No 462
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.57 E-value=0.0013 Score=53.26 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++++|+.|+|||||++.+.+-
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 56899999999999999999973
No 463
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.57 E-value=0.093 Score=48.49 Aligned_cols=35 Identities=14% Similarity=0.097 Sum_probs=24.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCC-CceEEEec
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVN 37 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~-~G~v~i~g 37 (247)
-.+.|.|++|+|||||+..++-..... ++.|.+..
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred eEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 357899999999999988877544333 44555554
No 464
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.57 E-value=0.00096 Score=52.26 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcC
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCET 28 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~ 28 (247)
.+.|.||+|+||||+++.++..+..
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999987644
No 465
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.57 E-value=0.0011 Score=51.95 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++++|++|+|||||++.+.+-
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999873
No 466
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.55 E-value=0.0013 Score=57.41 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
..++|+|++|+|||||++.+.|.
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999974
No 467
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.55 E-value=0.0013 Score=53.19 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
.+-++|+|+.|+|||||++.+.+-.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3678999999999999999999753
No 468
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.55 E-value=0.0011 Score=53.00 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYR 24 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (247)
+-++|+|+.|+|||||++.+.+
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999999976
No 469
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=96.54 E-value=0.0038 Score=51.39 Aligned_cols=42 Identities=24% Similarity=0.274 Sum_probs=33.0
Q ss_pred CCeEEEEEc-CCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC
Q 025844 1 MGYAQLVIG-PAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (247)
Q Consensus 1 ~~~~~~iiG-pnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~ 42 (247)
|..+++|.| ..|+||||+.-.++..+...+.+|.+.+.|+..
T Consensus 1 M~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~ 43 (237)
T 1g3q_A 1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTM 43 (237)
T ss_dssp CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTS
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence 555666665 568999999999998887666689999888853
No 470
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.54 E-value=0.0017 Score=57.15 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
+.+++|.||+|||||||...++..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3578899999999999999999765
No 471
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.53 E-value=0.0023 Score=53.90 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=25.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEE
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMH 34 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~ 34 (247)
.+.|.||+|+|||++++.++.......+.+.
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~~~~~~~~~ 61 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTSTTTTSCEE
T ss_pred CEEEECCCCCcHHHHHHHHHHhcCccCCCeE
Confidence 4679999999999999999988765444443
No 472
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.53 E-value=0.0013 Score=52.76 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYR 24 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (247)
+-++|+|+.|+|||||++.+.+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 6789999999999999999864
No 473
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.53 E-value=0.0016 Score=51.93 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 56899999999999999999864
No 474
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.53 E-value=0.0016 Score=52.17 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++++|+.|+|||||++.+.+-
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999863
No 475
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.52 E-value=0.0012 Score=60.03 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
+.++.++|++||||||+.+.++..+
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578899999999999999998643
No 476
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.52 E-value=0.0012 Score=52.45 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999863
No 477
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.51 E-value=0.0017 Score=53.40 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEE
Q 025844 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (247)
Q Consensus 1 ~~~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i 35 (247)
|...++|=|+-||||||.++.|+..+.. +..+..
T Consensus 1 M~kFI~~EG~dGsGKsTq~~~L~~~L~~-~~~v~~ 34 (205)
T 4hlc_A 1 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 34 (205)
T ss_dssp -CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHC-CCCEEE
Confidence 5556789999999999999999998853 344443
No 478
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.50 E-value=0.0049 Score=65.09 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=28.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEecc
Q 025844 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (247)
Q Consensus 4 ~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~ 38 (247)
.+.|.||+|+|||||+..++......++.+.+...
T Consensus 734 lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~ 768 (1706)
T 3cmw_A 734 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 768 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred eEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEec
Confidence 67899999999999999998877666667766543
No 479
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.49 E-value=0.0015 Score=52.54 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999973
No 480
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.49 E-value=0.0015 Score=53.24 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYR 24 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (247)
+-++|+|+.|+|||||++.+.+
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 5689999999999999999986
No 481
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.48 E-value=0.0018 Score=51.88 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
.+-++++|++|+|||||++.+.+-.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcC
Confidence 3568999999999999999888743
No 482
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.48 E-value=0.0093 Score=52.45 Aligned_cols=25 Identities=8% Similarity=-0.031 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
-++.|.||+|+|||++++.++..+.
T Consensus 46 ~~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 46 KLFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp CEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999998764
No 483
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.47 E-value=0.0017 Score=52.68 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
+-++|+|+.|+|||||++.+.+-.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 568999999999999999999753
No 484
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.45 E-value=0.001 Score=52.34 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=10.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYR 24 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g 24 (247)
+-++|+|+.|+|||||++.+.+
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5689999999999999998874
No 485
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=96.45 E-value=0.0018 Score=53.64 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhC
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+|.+||+|.-||||||..+.+..+
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~~ 32 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAAR 32 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHHHC
Confidence 589999999999999999999873
No 486
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.44 E-value=0.0016 Score=54.32 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
..++|.|+.||||||+++.|+..++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 5688999999999999999998774
No 487
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.43 E-value=0.0019 Score=51.34 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++++|+.|+|||||++.+.+-
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999964
No 488
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.41 E-value=0.0027 Score=56.49 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=19.9
Q ss_pred EEEE--EcCCCCcHHHHHHHHHhCCc
Q 025844 4 AQLV--IGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 4 ~~~i--iGpnGSGKSTLl~~l~g~l~ 27 (247)
.+.| .||+|+|||||++.++....
T Consensus 52 ~~li~i~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp EEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence 3455 89999999999999987654
No 489
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.41 E-value=0.0011 Score=56.21 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
..++|.|+.||||||+++.|+..+.
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998764
No 490
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.40 E-value=0.002 Score=54.99 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
+.++++|.+|+|||||++.+.|-..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 3688999999999999999997644
No 491
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.40 E-value=0.0019 Score=54.38 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
+-.+|+||+||||||.++.|+..+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 357999999999999999998654
No 492
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.39 E-value=0.01 Score=63.54 Aligned_cols=117 Identities=16% Similarity=0.163 Sum_probs=63.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeccCCCCCCCCCCcccChhhhHhHHHHHHHcCCCCCCchhhhHHhhh
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~~~~~y~~~~~v~e~i~~~~~l~~~~L~~~~~~~~~~~~l~ 82 (247)
-++.|.||+|+|||||+..++......++.+.+....-..+ . + ..+.+|+....-.+.... -.
T Consensus 384 ~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~-----------~-~----~a~~lGvd~~~L~I~~~~-~~ 446 (2050)
T 3cmu_A 384 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD-----------P-I----YARKLGVDIDNLLCSQPD-TG 446 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCC-----------H-H----HHHHTTCCTTTCEEECCS-SH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHH-----------H-H----HHHHcCCCHHHeEEeCCC-CH
Confidence 36789999999999999988876655556666654322111 0 0 134455432211111000 11
Q ss_pred hhHHHHHHHHhhcCCCCCEEEEeCCCcccH--H-----------hHHHHHHHHHHHH----HhCCCeEEEEE
Q 025844 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIEL--F-----------THVPVLRNFVDHL----KSRNFNVCAVY 137 (247)
Q Consensus 83 ~~~~~~la~al~~~~~p~~lilDEPt~LD~--~-----------~~~~~~~~ll~~l----~~~~~~ii~v~ 137 (247)
..+ ..+++.+.....|+++++|.-..+-+ . .+...+.+.++.| ++.+.+++++.
T Consensus 447 e~i-l~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlin 517 (2050)
T 3cmu_A 447 EQA-LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 517 (2050)
T ss_dssp HHH-HHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HHH-HHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 122 33444443222799999999987432 0 1222222555555 35688887763
No 493
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.38 E-value=0.016 Score=50.07 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l 26 (247)
..+.+-||+|+||||+++.++..+
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHT
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHh
Confidence 356677889999999999999776
No 494
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.37 E-value=0.0055 Score=60.36 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
-.+.+.||+|+|||||.+++++.+.
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~elg 263 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTTTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4788999999999999999998753
No 495
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.37 E-value=0.0025 Score=56.63 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCc
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~ 27 (247)
-.++|+||.|||||||...|+..+.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3789999999999999999998763
No 496
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.37 E-value=0.0022 Score=51.73 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++|+|+.|+|||||++.+.+-
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 56899999999999999999864
No 497
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.36 E-value=0.0021 Score=54.70 Aligned_cols=23 Identities=35% Similarity=0.535 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
+-++++|+.|+|||||++.+.|-
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999974
No 498
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=96.36 E-value=0.0039 Score=52.03 Aligned_cols=42 Identities=14% Similarity=0.214 Sum_probs=32.6
Q ss_pred CCeEEEEEc-CCCCcHHHHHHHHHhCCcCCCceEEEeccCCCC
Q 025844 1 MGYAQLVIG-PAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (247)
Q Consensus 1 ~~~~~~iiG-pnGSGKSTLl~~l~g~l~~~~G~v~i~g~d~~~ 42 (247)
|.-+++|.| .-|+||||+.-.++..+...+.+|.+.+.|+..
T Consensus 1 M~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~ 43 (260)
T 3q9l_A 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGL 43 (260)
T ss_dssp -CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 555666655 567999999999998887766689999998854
No 499
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.34 E-value=0.0016 Score=54.91 Aligned_cols=30 Identities=20% Similarity=0.154 Sum_probs=25.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCcCCCce
Q 025844 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRT 32 (247)
Q Consensus 3 ~~~~iiGpnGSGKSTLl~~l~g~l~~~~G~ 32 (247)
..++|.|++||||||+++.|+..+...+-+
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 568899999999999999999988764333
No 500
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.33 E-value=0.00085 Score=54.55 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhC
Q 025844 2 GYAQLVIGPAGSGKSTYCSSLYRH 25 (247)
Q Consensus 2 ~~~~~iiGpnGSGKSTLl~~l~g~ 25 (247)
.+-++|+|+.|+|||||++.+.+-
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTTC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 367899999999999999988753
Done!