BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025845
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GZJ|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
Length = 258
Score = 188 bits (477), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 125/174 (71%), Gaps = 2/174 (1%)
Query: 8 EEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPL 67
++KHFVLVHG GAW WYKLK L + GH+VTAVDL+A+GIN +R++++HTF YSEPL
Sbjct: 3 QQKHFVLVHGGCLGAWIWYKLKPLLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSEPL 62
Query: 68 MEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQY 127
MEV+AS+P +EKV+L+GHS GG++L LA + +P KISVAVF++A MPD H ++ E+Y
Sbjct: 63 MEVMASIPPDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEKY 122
Query: 128 SEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPPEVINLLRI 181
+EK D LD+QFS +SM+ G +F+ +K++Q C E + L ++
Sbjct: 123 NEKCPA--DMMLDSQFSTYGNPENPGMSMILGPQFMALKMFQNCSVEDLELAKM 174
>pdb|2WFM|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
Length = 264
Score = 188 bits (477), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 125/174 (71%), Gaps = 2/174 (1%)
Query: 8 EEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPL 67
++KHFVLVHG GAW WYKLK L + GH+VTAVDL+A+GIN +R++++HTF YSEPL
Sbjct: 9 QQKHFVLVHGGCLGAWIWYKLKPLLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSEPL 68
Query: 68 MEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQY 127
MEV+AS+P +EKV+L+GHS GG++L LA + +P KISVAVF++A MPD H ++ E+Y
Sbjct: 69 MEVMASIPPDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEKY 128
Query: 128 SEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPPEVINLLRI 181
+EK D LD+QFS +SM+ G +F+ +K++Q C E + L ++
Sbjct: 129 NEKCPA--DMMLDSQFSTYGNPENPGMSMILGPQFMALKMFQNCSVEDLELAKM 180
>pdb|2WFL|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 188 bits (477), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 125/174 (71%), Gaps = 2/174 (1%)
Query: 8 EEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPL 67
++KHFVLVHG GAW WYKLK L + GH+VTAVDL+A+GIN +R++++HTF YSEPL
Sbjct: 9 QQKHFVLVHGGCLGAWIWYKLKPLLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSEPL 68
Query: 68 MEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQY 127
MEV+AS+P +EKV+L+GHS GG++L LA + +P KISVAVF++A MPD H ++ E+Y
Sbjct: 69 MEVMASIPPDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEKY 128
Query: 128 SEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPPEVINLLRI 181
+EK D LD+QFS +SM+ G +F+ +K++Q C E + L ++
Sbjct: 129 NEKCPA--DMMLDSQFSTYGNPENPGMSMILGPQFMALKMFQNCSVEDLELAKM 180
>pdb|2WFL|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 188 bits (477), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 125/174 (71%), Gaps = 2/174 (1%)
Query: 8 EEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPL 67
++KHFVLVHG GAW WYKLK L + GH+VTAVDL+A+GIN +R++++HTF YSEPL
Sbjct: 9 QQKHFVLVHGGCLGAWIWYKLKPLLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSEPL 68
Query: 68 MEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQY 127
MEV+AS+P +EKV+L+GHS GG++L LA + +P KISVAVF++A MPD H ++ E+Y
Sbjct: 69 MEVMASIPPDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEKY 128
Query: 128 SEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPPEVINLLRI 181
+EK D LD+QFS +SM+ G +F+ +K++Q C E + L ++
Sbjct: 129 NEKCPA--DMMLDSQFSTYGNPENPGMSMILGPQFMALKMFQNCSVEDLELAKM 180
>pdb|1XKL|A Chain A, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|B Chain B, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|C Chain C, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|D Chain D, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
Length = 273
Score = 184 bits (468), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 95/171 (55%), Positives = 118/171 (69%), Gaps = 2/171 (1%)
Query: 8 EEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPL 67
E KHFVLVHG HG W WYKLK L A GH+VTA+DLAASG ++++IE++ T + Y+ PL
Sbjct: 3 EGKHFVLVHGACHGGWSWYKLKPLLEAAGHKVTALDLAASGTDLRKIEELRTLYDYTLPL 62
Query: 68 MEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQY 127
E+ SL A+EKVILVGHSLGG L LA +K+P KI AVF+ AF PD+ H SFVLEQY
Sbjct: 63 XELXESLSADEKVILVGHSLGGXNLGLAXEKYPQKIYAAVFLAAFXPDSVHNSSFVLEQY 122
Query: 128 SEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPPEVINL 178
+E+ E+ WLDTQF + S FG +FL K+YQLC PE + L
Sbjct: 123 NERTPAEN--WLDTQFLPYGSPEEPLTSXFFGPKFLAHKLYQLCSPEDLAL 171
>pdb|1Y7H|A Chain A, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|B Chain B, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|C Chain C, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|D Chain D, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|E Chain E, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|F Chain F, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|G Chain G, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|H Chain H, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7I|A Chain A, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7I|B Chain B, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
Length = 268
Score = 184 bits (467), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 95/171 (55%), Positives = 118/171 (69%), Gaps = 2/171 (1%)
Query: 8 EEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPL 67
E KHFVLVHG HG W WYKLK L A GH+VTA+DLAASG ++++IE++ T + Y+ PL
Sbjct: 3 EGKHFVLVHGACHGGWSWYKLKPLLEAAGHKVTALDLAASGTDLRKIEELRTLYDYTLPL 62
Query: 68 MEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQY 127
E+ SL A+EKVILVGHSLGG L LA +K+P KI AVF+ AF PD+ H SFVLEQY
Sbjct: 63 XELXESLSADEKVILVGHSLGGXNLGLAXEKYPQKIYAAVFLAAFXPDSVHNSSFVLEQY 122
Query: 128 SEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPPEVINL 178
+E+ E+ WLDTQF + S FG +FL K+YQLC PE + L
Sbjct: 123 NERTPAEN--WLDTQFLPYGSPEEPLTSXFFGPKFLAHKLYQLCSPEDLAL 171
>pdb|3DQZ|A Chain A, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|B Chain B, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|C Chain C, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|D Chain D, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
Length = 258
Score = 171 bits (434), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 91/176 (51%), Positives = 115/176 (65%), Gaps = 5/176 (2%)
Query: 7 MEEKH-FVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSE 65
ME KH FVLVH HGAW WYKLK L + GHRVTAV+LAASGI+ + I+ V T YS+
Sbjct: 1 MERKHHFVLVHNAYHGAWIWYKLKPLLESAGHRVTAVELAASGIDPRPIQAVETVDEYSK 60
Query: 66 PLMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLE 125
PL+E L SLP E+VILVG S GG+ +ALAAD FP KI V VF+ AF+PDTTH PS VL+
Sbjct: 61 PLIETLKSLPENEEVILVGFSFGGINIALAADIFPAKIKVLVFLNAFLPDTTHVPSHVLD 120
Query: 126 QYSEKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPPEVINLLRI 181
+Y E G D +FS + N + + G +F+ ++YQ CP E L ++
Sbjct: 121 KYMEMPG----GLGDCEFSSHETRNGTMSLLKMGPKFMKARLYQNCPIEDYELAKM 172
>pdb|2G4L|A Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
Length = 257
Score = 151 bits (381), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/171 (44%), Positives = 106/171 (61%), Gaps = 4/171 (2%)
Query: 11 HFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEV 70
HFVL+H + HGAW W+KLK L A GH+VTA+DLAASG++ ++IE++ +F YSEPL+
Sbjct: 5 HFVLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASGVDPRQIEEIGSFDEYSEPLLTF 64
Query: 71 LASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQYSEK 130
L +LP EKVILVG S GG+ +A+AADK+ KI+ AVF + +PDT H PS+V+++ E
Sbjct: 65 LEALPPGEKVILVGESCGGLNIAIAADKYXEKIAAAVFHNSVLPDTEHCPSYVVDKLMEV 124
Query: 131 MGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPPEVINLLRI 181
W DT + + G L +Y LC PE L ++
Sbjct: 125 F----PDWKDTTYFTYTKDGKEITGLKLGFTLLRENLYTLCGPEEYELAKM 171
>pdb|1SCI|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis
pdb|1SCK|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis In Complex With Acetone
pdb|1SCQ|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis In Complex With Acetonecyanohydrin
Length = 257
Score = 150 bits (380), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 76/171 (44%), Positives = 106/171 (61%), Gaps = 4/171 (2%)
Query: 11 HFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEV 70
HFVL+H + HGAW W+KLK L A GH+VTA+DLAASG++ ++IE++ +F YSEPL+
Sbjct: 5 HFVLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASGVDPRQIEEIGSFDEYSEPLLTF 64
Query: 71 LASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQYSEK 130
L +LP EKVILVG S GG+ +A+AADK+ KI+ AVF + +PDT H PS+V+++ E
Sbjct: 65 LEALPPGEKVILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEV 124
Query: 131 MGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPPEVINLLRI 181
W DT + + G L +Y LC PE L ++
Sbjct: 125 F----PDWKDTTYFTYTKDGKEITGLKLGFTLLRENLYTLCGPEEYELAKM 171
>pdb|1YB6|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With Mandelonitrile
pdb|1YB7|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With 2,3- Dimethyl-2-Hydroxy-Butyronitrile
Length = 256
Score = 150 bits (380), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 76/171 (44%), Positives = 106/171 (61%), Gaps = 4/171 (2%)
Query: 11 HFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEV 70
HFVL+H + HGAW W+KLK L A GH+VTA+DLAASG++ ++IE++ +F YSEPL+
Sbjct: 4 HFVLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASGVDPRQIEEIGSFDEYSEPLLTF 63
Query: 71 LASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQYSEK 130
L +LP EKVILVG S GG+ +A+AADK+ KI+ AVF + +PDT H PS+V+++ E
Sbjct: 64 LEALPPGEKVILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEV 123
Query: 131 MGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPPEVINLLRI 181
W DT + + G L +Y LC PE L ++
Sbjct: 124 F----PDWKDTTYFTYTKDGKEITGLKLGFTLLRENLYTLCGPEEYELAKM 170
>pdb|1YAS|A Chain A, Hydroxynitrile Lyase Complexed With Histidine
pdb|7YAS|A Chain A, Hydroxynitrile Lyase, Low Temperature Native Structure
pdb|2YAS|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis Complexed
With Rhodanide
pdb|3YAS|A Chain A, Hydroxynitrile Lyase Complexed With Acetone
pdb|4YAS|A Chain A, Hydroxynitrile Lyase Complexed With Chloralhydrate
pdb|5YAS|A Chain A, Hydroxynitrile Lyase Complexed With Hexafluoroacetone
pdb|6YAS|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis, Room
Temperature Structure
pdb|1QJ4|A Chain A, Hydroxynitrile-lyase From Hevea Brasiliensis At Atomic
Resolution
pdb|1SC9|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With The Natural Substrate Acetone Cyanohydrin
pdb|3C6X|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C6Y|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C6Z|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C70|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
Length = 257
Score = 150 bits (380), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 76/171 (44%), Positives = 106/171 (61%), Gaps = 4/171 (2%)
Query: 11 HFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEV 70
HFVL+H + HGAW W+KLK L A GH+VTA+DLAASG++ ++IE++ +F YSEPL+
Sbjct: 5 HFVLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASGVDPRQIEEIGSFDEYSEPLLTF 64
Query: 71 LASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQYSEK 130
L +LP EKVILVG S GG+ +A+AADK+ KI+ AVF + +PDT H PS+V+++ E
Sbjct: 65 LEALPPGEKVILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEV 124
Query: 131 MGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPPEVINLLRI 181
W DT + + G L +Y LC PE L ++
Sbjct: 125 F----PDWKDTTYFTYTKDGKEITGLKLGFTLLRENLYTLCGPEEYELAKM 171
>pdb|3STY|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I T18a
Mutant
pdb|3STY|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I T18a
Mutant
Length = 267
Score = 147 bits (371), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 109/194 (56%), Gaps = 13/194 (6%)
Query: 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLM 68
+KHFVLVH HGAWCWYK+ A + + GH VTA+DL ASGIN K+ + F Y PLM
Sbjct: 12 KKHFVLVHAAFHGAWCWYKIVALMRSSGHNVTALDLGASGINPKQALQIPNFSDYLSPLM 71
Query: 69 EVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQYS 128
E +ASLPA EK+ILVGH+LGG+ ++ A + FP KISVAVF++ MP P+
Sbjct: 72 EFMASLPANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPG----PNIDATTVC 127
Query: 129 EKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPPEVINLLRITFIGRAI 188
K G LD + + +++ G +FL +Y L P E +L T + R +
Sbjct: 128 TKAGSAVLGQLDNCVTYENGPTNPPTTLIAGPKFLATNVYHLSPIE--DLALATALVRPL 185
Query: 189 VLRQIVSYLYLDSD 202
YLYL D
Sbjct: 186 -------YLYLAED 192
>pdb|3STX|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I H243a
Variant Complexed With Beta-Ketoheptanoate
pdb|3STX|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I H243a
Variant Complexed With Beta-Ketoheptanoate
Length = 267
Score = 147 bits (370), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 109/194 (56%), Gaps = 13/194 (6%)
Query: 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLM 68
+KHFVLVH HGAWCWYK+ A + + GH VTA+DL ASGIN K+ + F Y PLM
Sbjct: 12 KKHFVLVHTAFHGAWCWYKIVALMRSSGHNVTALDLGASGINPKQALQIPNFSDYLSPLM 71
Query: 69 EVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQYS 128
E +ASLPA EK+ILVGH+LGG+ ++ A + FP KISVAVF++ MP P+
Sbjct: 72 EFMASLPANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPG----PNIDATTVC 127
Query: 129 EKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPPEVINLLRITFIGRAI 188
K G LD + + +++ G +FL +Y L P E +L T + R +
Sbjct: 128 TKAGSAVLGQLDNCVTYENGPTNPPTTLIAGPKFLATNVYHLSPIE--DLALATALVRPL 185
Query: 189 VLRQIVSYLYLDSD 202
YLYL D
Sbjct: 186 -------YLYLAED 192
>pdb|3STT|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I Apo
Form
pdb|3STT|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I Apo
Form
pdb|3STU|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With Methyl-3-Hydroxydodecanoate
pdb|3STU|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With Methyl-3-Hydroxydodecanoate
pdb|3STV|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 3- Hydroxyoctanoate
pdb|3STV|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 3- Hydroxyoctanoate
pdb|3STW|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 2- Tridecanone
pdb|3STW|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 2- Tridecanone
Length = 267
Score = 146 bits (369), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 109/194 (56%), Gaps = 13/194 (6%)
Query: 9 EKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLM 68
+KHFVLVH HGAWCWYK+ A + + GH VTA+DL ASGIN K+ + F Y PLM
Sbjct: 12 KKHFVLVHTAFHGAWCWYKIVALMRSSGHNVTALDLGASGINPKQALQIPNFSDYLSPLM 71
Query: 69 EVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQYS 128
E +ASLPA EK+ILVGH+LGG+ ++ A + FP KISVAVF++ MP P+
Sbjct: 72 EFMASLPANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPG----PNIDATTVC 127
Query: 129 EKMGKEDDSWLDTQFSQCDASNPSHISMLFGREFLTIKIYQLCPPEVINLLRITFIGRAI 188
K G LD + + +++ G +FL +Y L P E +L T + R +
Sbjct: 128 TKAGSAVLGQLDNCVTYENGPTNPPTTLIAGPKFLATNVYHLSPIE--DLALATALVRPL 185
Query: 189 VLRQIVSYLYLDSD 202
YLYL D
Sbjct: 186 -------YLYLAED 192
>pdb|1DWQ|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
pdb|1DWQ|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
Length = 262
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 101/162 (62%), Gaps = 5/162 (3%)
Query: 11 HFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEV 70
HFVL+H + HGAW W+KLK L GH+VTA+D+AASGI+ ++IE +++F YSEPL+
Sbjct: 9 HFVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEYSEPLLTF 68
Query: 71 LASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQYSEK 130
L LP EKVI+VG S G+ +A+AAD++ KI+ VF + +PDT H PS+ +E+ E
Sbjct: 69 LEKLPQGEKVIIVGESXAGLNIAIAADRYVDKIAAGVFHNSLLPDTVHSPSYTVEKLLES 128
Query: 131 MGKEDDSWLDTQ-FSQCDASNPSHISMLFGREFLTIKIYQLC 171
W DT+ F+ + + + +M G L ++ C
Sbjct: 129 F----PDWRDTEYFTFTNITGETITTMKLGFVLLRENLFTKC 166
>pdb|1DWO|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
pdb|1DWO|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
pdb|1DWP|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta At 2.2 Angstrom Resolution
pdb|1DWP|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta At 2.2 Angstrom Resolution
Length = 262
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 101/162 (62%), Gaps = 5/162 (3%)
Query: 11 HFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEV 70
HFVL+H + HGAW W+KLK L GH+VTA+D+AASGI+ ++IE +++F YSEPL+
Sbjct: 9 HFVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEYSEPLLTF 68
Query: 71 LASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQYSEK 130
L LP EKVI+VG S G+ +A+AAD++ KI+ VF + +PDT H PS+ +E+ E
Sbjct: 69 LEKLPQGEKVIIVGESCAGLNIAIAADRYVDKIAAGVFHNSLLPDTVHSPSYTVEKLLES 128
Query: 131 MGKEDDSWLDTQ-FSQCDASNPSHISMLFGREFLTIKIYQLC 171
W DT+ F+ + + + +M G L ++ C
Sbjct: 129 F----PDWRDTEYFTFTNITGETITTMKLGFVLLRENLFTKC 166
>pdb|3RKS|A Chain A, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
pdb|3RKS|B Chain B, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
pdb|3RKS|C Chain C, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
pdb|3RKS|D Chain D, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
Length = 258
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 101/162 (62%), Gaps = 5/162 (3%)
Query: 11 HFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEV 70
HFVL+H + HGAW W+KLK L GH+VTA+D+AASGI+ ++IE +++F YSEPL+
Sbjct: 5 HFVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEYSEPLLTF 64
Query: 71 LASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQYSEK 130
L LP EKVI+VG S G+ +A+AAD++ KI+ VF + +PDT H PS+ +E+ E
Sbjct: 65 LEKLPQGEKVIIVGESCAGLNIAIAADRYVDKIAAGVFHNSLLPDTVHSPSYTVEKLLES 124
Query: 131 MGKEDDSWLDTQ-FSQCDASNPSHISMLFGREFLTIKIYQLC 171
W DT+ F+ + + + +M G L ++ C
Sbjct: 125 F----PDWRDTEYFTFTNITGETITTMKLGFVLLRENLFTKC 162
>pdb|3RKT|A Chain A, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|B Chain B, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|C Chain C, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|D Chain D, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|E Chain E, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|F Chain F, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|G Chain G, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|H Chain H, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
Length = 258
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 101/162 (62%), Gaps = 5/162 (3%)
Query: 11 HFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEV 70
HFVL+H + HGAW W+KLK L GH+VTA+D+AASGI+ ++IE +++F YSEPL+
Sbjct: 5 HFVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEYSEPLLTF 64
Query: 71 LASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQYSEK 130
L LP EKVI+VG S G+ +A+AAD++ KI+ VF + +PDT H PS+ +E+ E
Sbjct: 65 LEKLPQGEKVIIVGESCAGLNIAIAADRYVDKIAAGVFHNSLLPDTVHSPSYTVEKLLES 124
Query: 131 MGKEDDSWLDTQ-FSQCDASNPSHISMLFGREFLTIKIYQLC 171
W DT+ F+ + + + +M G L ++ C
Sbjct: 125 F----PDWRDTEYFTFTNITGETITTMKLGFVLLRENLFTKC 162
>pdb|1E89|A Chain A, On The Mechanism Of Cyanogenesis Catalyzed By
Hydroxynitrile Lyase From Manihot Esculenta. Crystal
Structure Of Active Site Mutant Ser80ala In Complex With
Acetone Cyanohydrin
pdb|1E89|B Chain B, On The Mechanism Of Cyanogenesis Catalyzed By
Hydroxynitrile Lyase From Manihot Esculenta. Crystal
Structure Of Active Site Mutant Ser80ala In Complex With
Acetone Cyanohydrin
pdb|1E8D|A Chain A, Mechanistic Aspects Of Cyanogenesis From Active Site
Mutant Ser80ala Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Acetone Cyanohydrin
pdb|1E8D|B Chain B, Mechanistic Aspects Of Cyanogenesis From Active Site
Mutant Ser80ala Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Acetone Cyanohydrin
Length = 262
Score = 138 bits (347), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 101/162 (62%), Gaps = 5/162 (3%)
Query: 11 HFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEV 70
HFVL+H + HGAW W+KLK L GH+VTA+D+AASGI+ ++IE +++F YSEPL+
Sbjct: 9 HFVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEYSEPLLTF 68
Query: 71 LASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQYSEK 130
L LP EKVI+VG + G+ +A+AAD++ KI+ VF + +PDT H PS+ +E+ E
Sbjct: 69 LEKLPQGEKVIIVGEACAGLNIAIAADRYVDKIAAGVFHNSLLPDTVHSPSYTVEKLLES 128
Query: 131 MGKEDDSWLDTQ-FSQCDASNPSHISMLFGREFLTIKIYQLC 171
W DT+ F+ + + + +M G L ++ C
Sbjct: 129 F----PDWRDTEYFTFTNITGETITTMKLGFVLLRENLFTKC 166
>pdb|1EB8|A Chain A, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
pdb|1EB8|B Chain B, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
pdb|1EB9|A Chain A, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
pdb|1EB9|B Chain B, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
Length = 262
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 87/127 (68%)
Query: 11 HFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEV 70
HFVL+H + HGAW W+KLK L GH+VTA+D+AASGI+ ++IE +++F YSEPL+
Sbjct: 9 HFVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEYSEPLLTF 68
Query: 71 LASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQYSEK 130
L LP EKVI+VG S G+ +A+AAD++ KI+ VF + +PDT H PS+ +E+ E
Sbjct: 69 LEKLPQGEKVIIVGESCAGLNIAIAADRYVDKIAAGVFHNSLLPDTVHSPSYTVEKLLES 128
Query: 131 MGKEDDS 137
D+
Sbjct: 129 FPDARDT 135
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 5/126 (3%)
Query: 6 GMEEKHFVL-VHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYS 64
G E VL +HG+ W ++ L A G+RV A DL G +E V ++ + +
Sbjct: 22 GSPEHPVVLCIHGILEQGLAWQEVALPLAAQGYRVVAPDLFGHG-RSSHLEMVTSYSSLT 80
Query: 65 --EPLMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSF 122
+ V+ LP ++ ++LVGHS+G + A P KI + V +P +
Sbjct: 81 FLAQIDRVIQELP-DQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLPAEESKKES 139
Query: 123 VLEQYS 128
+ Q +
Sbjct: 140 AVNQLT 145
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 14/126 (11%)
Query: 13 VLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMK-----RIEDVHTFHAYSEPL 67
+ +HG ++ W + +VA G+R A DL G + K R++D H AY +
Sbjct: 33 LFLHGNPTSSYLWRNIIPYVVAAGYRAVAPDLIGXGDSAKPDIEYRLQD-HV--AYXDGF 89
Query: 68 MEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQY 127
++ L + +LV H G V A P +++ F A +P PS+ E
Sbjct: 90 IDALGL----DDXVLVIHDWGSVIGXRHARLNPDRVAAVAFXEALVPPALPXPSY--EAX 143
Query: 128 SEKMGK 133
++G
Sbjct: 144 GPQLGP 149
>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
Length = 279
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Query: 13 VLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLA 72
VL+HG W + L+A G+RV D G + K + + + ++ L VL
Sbjct: 27 VLIHGYPLDGHSWERQTRELLAQGYRVITYDRRGFGGSSK-VNTGYDYDTFAADLHTVLE 85
Query: 73 SLPAEEKVILVGHSLGGVTLALAADKFPH-KISVAVFVTAFMP 114
+L + V+LVG S+G LA ++ H +++ F+ + P
Sbjct: 86 TLDLRD-VVLVGFSMGTGELARYVARYGHERVAKLAFLASLEP 127
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 10/119 (8%)
Query: 8 EEKHFVLVHGVNHGAWCWYKLKARL--VAGGHRVTAVDLAASGINMKRIEDVHTFHAYSE 65
++ VL+HG GA W + +A V AVD G + KR E F+ Y+
Sbjct: 55 NDQTVVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRAEHGQ-FNRYAA 113
Query: 66 PLMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVF-------VTAFMPDTT 117
++ L +V LVG+SLGG T A +P + V + F PD T
Sbjct: 114 MALKGLFDQLGLGRVPLVGNSLGGGTAVRFALDYPARAGRLVLMGPGGLSINLFAPDPT 172
>pdb|4IH1|A Chain A, Crystal Structure Of Karrikin Insensitive 2 (kai2) From
Arabidopsis Thaliana
Length = 270
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 8/133 (6%)
Query: 3 EVVGMEEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTF-- 60
+V+G E VL HG W L LV +RV D +G D +
Sbjct: 11 KVIGSGEATIVLGHGFGTDQSVWKHLVPHLV-DDYRVVLYDNMGAGTTNPDYFDFDRYSN 69
Query: 61 -HAYSEPLMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTA---FMPDT 116
YS L+ +L L E I VGHS+ + LA+ P S V ++A ++ D
Sbjct: 70 LEGYSFDLIAILEDLKI-ESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISASPRYVNDV 128
Query: 117 THRPSFVLEQYSE 129
++ F E ++
Sbjct: 129 DYQGGFEQEDLNQ 141
>pdb|4HRX|A Chain A, Crystal Structure Of Kai2
pdb|4HRY|A Chain A, The Structure Of Arabidopsis Thaliana Kai2
pdb|4HTA|A Chain A, The Structure Of The Karrikin Insensitive (kai2) Protein
In Arabidopsis Thaliana
Length = 288
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 8/133 (6%)
Query: 3 EVVGMEEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTF-- 60
+V+G E VL HG W L LV +RV D +G D +
Sbjct: 29 KVIGSGEATIVLGHGFGTDQSVWKHLVPHLV-DDYRVVLYDNMGAGTTNPDYFDFDRYSN 87
Query: 61 -HAYSEPLMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTA---FMPDT 116
YS L+ +L L E I VGHS+ + LA+ P S V ++A ++ D
Sbjct: 88 LEGYSFDLIAILEDLKI-ESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISASPRYVNDV 146
Query: 117 THRPSFVLEQYSE 129
++ F E ++
Sbjct: 147 DYQGGFEQEDLNQ 159
>pdb|3W06|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dwarf14 Like
(atd14l)
Length = 272
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 8/133 (6%)
Query: 3 EVVGMEEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTF-- 60
+V+G E VL HG W L LV +RV D +G D +
Sbjct: 13 KVIGSGEATIVLGHGFGTDQSVWKHLVPHLV-DDYRVVLYDNMGAGTTNPDYFDFDRYSN 71
Query: 61 -HAYSEPLMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTA---FMPDT 116
YS L+ +L L E I VGHS+ + LA+ P S V ++A ++ D
Sbjct: 72 LEGYSFDLIAILEDLKI-ESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISASPRYVNDV 130
Query: 117 THRPSFVLEQYSE 129
++ F E ++
Sbjct: 131 DYQGGFEQEDLNQ 143
>pdb|3BF7|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF7|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 12 FVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVL 71
VLVHG+ G+ + AR + H + VD+ G++ + E V + A ++ L++ L
Sbjct: 19 IVLVHGL-FGSLDNLGVLARDLVNDHNIIQVDVRNHGLSPR--EPVMNYPAMAQDLVDTL 75
Query: 72 ASLPAEEKVILVGHSLGGVTL----ALAADKFPHKISVAV 107
+L + K +GHS+GG + ALA D+ +++ +
Sbjct: 76 DALQID-KATFIGHSMGGKAVMALTALAPDRIDKLVAIDI 114
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 10/118 (8%)
Query: 9 EKHFVLVHGVNHGAWCWYKLKARL--VAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEP 66
++ VL+HG GA W + +A V AVD G + KR E F+ Y+
Sbjct: 36 DQTVVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRAEHGQ-FNRYAAM 94
Query: 67 LMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVF-------VTAFMPDTT 117
++ L +V LVG++LGG T A +P + V + F PD T
Sbjct: 95 ALKGLFDQLGLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMGPGGLSINLFAPDPT 152
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 14 LVHGVNHGAWCW-YKLKARLVAGGHRVTAVDLAASGINMKRIE-DVHTFHAYSEPLMEVL 71
L HG + W Y++ A L G+RV A+D+ G + E + + + ++ L
Sbjct: 44 LCHGFPESWYSWRYQIPA-LAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFL 102
Query: 72 ASLPAEEKVILVGHSLGGVTLALAADKFPHKI-SVAVFVTAFMP 114
L + + +GH GG+ + A +P ++ +VA T F+P
Sbjct: 103 DKL-GLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIP 145
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 14 LVHGVNHGAWCW-YKLKARLVAGGHRVTAVDLAASGINMKRIE-DVHTFHAYSEPLMEVL 71
L HG + W Y++ A L G+RV A+D+ G + E + + + ++ L
Sbjct: 59 LCHGFPESWYSWRYQIPA-LAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFL 117
Query: 72 ASLPAEEKVILVGHSLGGVTLALAADKFPHKI-SVAVFVTAFMP 114
L + + +GH GG+ + A +P ++ +VA T F+P
Sbjct: 118 DKL-GLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIP 160
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 33.9 bits (76), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 14 LVHGVNHGAWCW-YKLKARLVAGGHRVTAVDLAASGINMKRIE-DVHTFHAYSEPLMEVL 71
L HG + W Y++ A L G+RV A+D+ G + E + + + ++ L
Sbjct: 263 LCHGFPESWYSWRYQIPA-LAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFL 321
Query: 72 ASLPAEEKVILVGHSLGGVTLALAADKFPHKI-SVAVFVTAFMP 114
L + + +GH GG+ + A +P ++ +VA T F+P
Sbjct: 322 DKL-GLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIP 364
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Query: 14 LVHGVNHGAWCW-YKLKARLVAGGHRVTAVDLAASGINMKRIE-DVHTFHAYSEPLMEVL 71
L HG + W Y++ A L G RV A+D+ G + E + + + ++ L
Sbjct: 261 LCHGFPESWFSWRYQIPA-LAQAGFRVLAIDMKGYGDSSSPPEIEEYAMELLCKEMVTFL 319
Query: 72 ASLPAEEKVILVGHSLGGVTLALAADKFPHKI-SVAVFVTAFMP 114
L + + +GH GV + A +P ++ +VA T FMP
Sbjct: 320 DKL-GIPQAVFIGHDWAGVMVWNMALFYPERVRAVASLNTPFMP 362
>pdb|3C5V|A Chain A, Pp2a-Specific Methylesterase Apo Form (Pme)
Length = 316
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 6 GMEEKHFVLVHGVNHGAWCWYKLKARLVAGGH-RVTAVDLAASG-INMKRIEDV--HTFH 61
G E +L+HG H A W A +++ R+ A+DL + G +K ED+ T
Sbjct: 35 GSEGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRSHGETKVKNPEDLSAETMA 94
Query: 62 AYSEPLMEVL-ASLPAEEKVILVGHSLGGV 90
++E + LP ++L+GHS+GG
Sbjct: 95 KDVGNVVEAMYGDLPP--PIMLIGHSMGGA 122
>pdb|3BF8|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF8|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 12 FVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVL 71
VLVHG+ G+ + AR + H + VD+ G++ + E V + A ++ L++ L
Sbjct: 19 IVLVHGL-FGSLDNLGVLARDLVNDHNIIQVDVRNHGLSPR--EPVMNYPAMAQDLVDTL 75
Query: 72 ASLPAEEKVILVGHSLGGVTL----ALAADKFPHKISVAV 107
+ + K +GHS+GG + ALA D+ +++ +
Sbjct: 76 DAQQID-KATFIGHSMGGKAVMALTALAPDRIDKLVAIDI 114
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 13 VLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMK-RIEDVHTFHAYSEPLMEVL 71
VL+HG + W L G+RV A+D G + K R++ + ++ VL
Sbjct: 37 VLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSKYRVQKAYRIKELVGDVVGVL 96
Query: 72 ASLPAEEKVILVGHSLG 88
S AE+ + VGH G
Sbjct: 97 DSYGAEQAFV-VGHDWG 112
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 13 VLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMK-RIEDVHTFHAYSEPLMEVL 71
VL+HG + W L G+RV A+D G + K R++ + ++ VL
Sbjct: 31 VLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSKYRVQKAYRIKELVGDVVGVL 90
Query: 72 ASLPAEEKVILVGHSLG 88
S AE+ + VGH G
Sbjct: 91 DSYGAEQAFV-VGHDWG 106
>pdb|1WOM|A Chain A, Crystal Structure Of Rsbq
pdb|1WOM|B Chain B, Crystal Structure Of Rsbq
pdb|1WPR|A Chain A, Crystal Structure Of Rsbq Inhibited By Pmsf
pdb|1WPR|B Chain B, Crystal Structure Of Rsbq Inhibited By Pmsf
Length = 271
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 37 HRVTAVDLAASGINMKRIEDVH---TFHAYSEPLMEVLASLPAEEKVILVGHSLGGVTLA 93
HRV D SG + R D++ T Y++ +++V +L +E V VGHS+G +
Sbjct: 47 HRVILFDYVGSGHSDLRAYDLNRYQTLDGYAQDVLDVCEALDLKETV-FVGHSVGALIGM 105
Query: 94 LAADKFPHKISVAVFV 109
LA+ + P S V V
Sbjct: 106 LASIRRPELFSHLVMV 121
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 10/112 (8%)
Query: 6 GMEEKHFVLVHGVNHGAWCWYKLKAR---LVAGGHRVTAVDLAASGINMKRIEDVHTFHA 62
G ++ VL+HG GA W LV G+RV +D G + + V +
Sbjct: 33 GQGDETVVLLHGSGPGATGWANFSRNIDPLVEAGYRVILLDCPGWG----KSDSVVNSGS 88
Query: 63 YSEPLMEVLASLPAE---EKVILVGHSLGGVTLALAADKFPHKISVAVFVTA 111
S+ +L S+ + K+ L+G+S+GG + K+P ++ V +
Sbjct: 89 RSDLNARILKSVVDQLDIAKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGG 140
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 13 VLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLA 72
VL+HG W + A L+ G+RV D G + + + + ++ L VL
Sbjct: 28 VLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTG-YDYDTFAADLNTVLE 86
Query: 73 SLPAEEKVILVGHSLGGVTLALAADKF-PHKISVAVFVTAFMP 114
+L ++ V LVG S+G +A + +I+ F+ + P
Sbjct: 87 TLDLQDAV-LVGFSMGTGEVARYVSSYGTARIAAVAFLASLEP 128
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 16 HGVNHGAWCWYKLKARLVAGGHRVT--AVDLAASGINMKRIEDVHTFHAYSEPLMEVLAS 73
HG+ + + L RL R T AVD G++ K E + + Y++ + ++ +
Sbjct: 75 HGITSNSAVFEPLXIRL---SDRFTTIAVDQRGHGLSDKP-ETGYEANDYADDIAGLIRT 130
Query: 74 LPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMP 114
L A ILVGHSLG AA K+P + V + F P
Sbjct: 131 L-ARGHAILVGHSLGARNSVTAAAKYPDLVRSVVAID-FTP 169
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 7/104 (6%)
Query: 10 KHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFH---AYSEP 66
+ +L HG N A W + L G+RV AVD + K ++F A +
Sbjct: 47 RTILLXHGKNFCAGTWERTIDVLADAGYRVIAVDQVGFCKSSKPAHYQYSFQQLAANTHA 106
Query: 67 LMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVT 110
L+E L + ++GHS GG A +P ++ V V
Sbjct: 107 LLERLGVA----RASVIGHSXGGXLATRYALLYPRQVERLVLVN 146
>pdb|3C5W|P Chain P, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 310
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 6 GMEEKHFVLVHGVNHGAWCWYKLKARLVAGGH-RVTAVDLAASG-INMKRIEDVHTFHAY 63
G E +L+HG H A W A +++ R+ A+DL + G +K ED+ +
Sbjct: 39 GSEGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRSHGETKVKNPEDL-SAETM 97
Query: 64 SEPLMEVLASLPAE--EKVILVGHSLGGV 90
++ + V+ ++ + ++L+GH++GG
Sbjct: 98 AKDVGNVVEAMYGDLPPPIMLIGHAMGGA 126
>pdb|4DNP|A Chain A, Crystal Structure Of Dad2
Length = 269
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 11/147 (7%)
Query: 3 EVVGMEEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVH---T 59
VVG E+ VL HG W ++ + +RV DL +G D T
Sbjct: 14 RVVGSGERVLVLAHGFGTDQSAWNRILPFFLR-DYRVVLYDLVCAGSVNPDFFDFRRYTT 72
Query: 60 FHAYSEPLMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTA---FMPDT 116
Y + L+ +L +L + VGHS+ + LA+ + P S + + A F+ D
Sbjct: 73 LDPYVDDLLHILDAL-GIDCCAYVGHSVSAMIGILASIRRPELFSKLILIGASPRFLNDE 131
Query: 117 THRPSF---VLEQYSEKMGKEDDSWLD 140
+ F +E+ M ++W++
Sbjct: 132 DYHGGFEQGEIEKVFSAMEANYEAWVN 158
>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
Mycobacterium Tuberculosis
Length = 330
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 6/105 (5%)
Query: 6 GMEEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSE 65
G + +HG A W + +V G AVDL G + R + ++ SE
Sbjct: 78 GGSAPRVIFLHGGGQNAHTWDTV---IVGLGEPALAVDLPGHGHSAWREDGNYSPQLNSE 134
Query: 66 PLMEVLASL-PAEEKVILVGHSLGGVTLALAADKFPHKISVAVFV 109
L VL L P E +VG SLGG+T A P + V V
Sbjct: 135 TLAPVLRELAPGAE--FVVGMSLGGLTAIRLAAMAPDLVGELVLV 177
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 13 VLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLA 72
VL+HG W + A L+ G+RV D G + + + + ++ L VL
Sbjct: 27 VLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTG-YDYDTFAADLNTVLE 85
Query: 73 SLPAEEKVILVGHSLG 88
+L ++ V LVG S+G
Sbjct: 86 TLDLQDAV-LVGFSMG 100
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 13 VLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLA 72
VL+HG W + A L+ G+RV D G + + + + ++ L VL
Sbjct: 27 VLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTG-YDYDTFAADLNTVLE 85
Query: 73 SLPAEEKVILVGHSLG 88
+L ++ V LVG S+G
Sbjct: 86 TLDLQDAV-LVGFSMG 100
>pdb|1R3D|A Chain A, Crystal Structure Of Protein Vc1974 From Vibrio
Cholerae, Pfam Abhydrolase
Length = 264
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 13 VLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLME-VL 71
VLVHG+ W + + L +DL G N +R D F E + + V
Sbjct: 20 VLVHGLLGSGADWQPVLSHLARTQCAALTLDLPGHGTNPERHCD--NFAEAVEXIEQTVQ 77
Query: 72 ASLPAEEKVILVGHSLGG 89
A + +E VILVG+SLGG
Sbjct: 78 AHVTSEVPVILVGYSLGG 95
>pdb|3BHW|A Chain A, Crystal Structure Of An Uncharacterized Protein From
Magnetospirillum Magneticum
pdb|3BHW|B Chain B, Crystal Structure Of An Uncharacterized Protein From
Magnetospirillum Magneticum
Length = 209
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 72 ASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPDTTHRPSFVLEQYSEKM 131
SL E I+ G L GVT D++ H I V + P T R S ++ E M
Sbjct: 15 GSLKLPESRIIAGLLLEGVT----EDQWRHAIEVENVLQRRSPGTAKRQSSLMRNRLETM 70
Query: 132 GKE 134
G E
Sbjct: 71 GPE 73
>pdb|4DNQ|A Chain A, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|B Chain B, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|C Chain C, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|D Chain D, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|E Chain E, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|F Chain F, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|G Chain G, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|H Chain H, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|I Chain I, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|J Chain J, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|K Chain K, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|L Chain L, Crystal Structure Of Dad2 S96a Mutant
Length = 269
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 11/147 (7%)
Query: 3 EVVGMEEKHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVH---T 59
VVG E+ VL HG W ++ + +RV DL +G D T
Sbjct: 14 RVVGSGERVLVLAHGFGTDQSAWNRILPFFLR-DYRVVLYDLVCAGSVNPDFFDFRRYTT 72
Query: 60 FHAYSEPLMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTA---FMPDT 116
Y + L+ +L +L + VGH++ + LA+ + P S + + A F+ D
Sbjct: 73 LDPYVDDLLHILDAL-GIDCCAYVGHAVSAMIGILASIRRPELFSKLILIGASPRFLNDE 131
Query: 117 THRPSF---VLEQYSEKMGKEDDSWLD 140
+ F +E+ M ++W++
Sbjct: 132 DYHGGFEQGEIEKVFSAMEANYEAWVN 158
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 13 VLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLA 72
VL+HG W + A L+ G+RV D G + + + + ++ L VL
Sbjct: 27 VLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTG-YDYDTFAADLNTVLE 85
Query: 73 SLPAEEKVILVGHSLG 88
+L ++ V LVG S G
Sbjct: 86 TLDLQDAV-LVGFSTG 100
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 8 EEKHFVLVHGVNHG--AWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSE 65
E + +L+HG G A+ ++L ++ +RV A D+ G + ++ ++ +
Sbjct: 24 EGQPVILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFGFTDRPENYNYSKDSWVD 83
Query: 66 PLMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTA 111
++ ++ +L E K +VG+S GG A ++ ++ V + A
Sbjct: 84 HIIGIMDALEIE-KAHIVGNSFGGGLAIATALRYSERVDRMVLMGA 128
>pdb|3S8Y|A Chain A, Bromide Soaked Structure Of An Esterase From The
Oil-Degrading Bacterium Oleispira Antarctica
Length = 280
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 67 LMEVLASL-PAEEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMP-DTTHRPSFVL 124
L E++ S+ P +K + GHS+GG A + P + V+AF P + +
Sbjct: 129 LPELIESMFPVSDKRAIAGHSMGGHGALTIALRNPERYQS---VSAFSPINNPVNCPWGQ 185
Query: 125 EQYSEKMGKEDDSW 138
+ ++ +GK+ D+W
Sbjct: 186 KAFTAYLGKDTDTW 199
>pdb|3N2Z|B Chain B, The Structure Of Human Prolylcarboxypeptidase At 2.80
Angstroms Resolution
Length = 446
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
Query: 27 KLKARLVAGGHRVTAVDLAASGINMKR------IEDVHTFHAYSEPLMEVLASLPAEEK- 79
+LKA LV HR L + K + ++E + + ++P E
Sbjct: 67 ELKAMLVFAEHRYYGESLPFGDNSFKDSRHLNFLTSEQALADFAELIKHLKRTIPGAENQ 126
Query: 80 -VILVGHSLGGVTLALAADKFPHKISVAVFVTA 111
VI +G S GG+ A K+PH + A+ +A
Sbjct: 127 PVIAIGGSYGGMLAAWFRMKYPHMVVGALAASA 159
>pdb|1IMJ|A Chain A, Crystal Structure Of The Human Ccg1/tafii250-interacting
Factor B (cib)
Length = 210
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 2 EEVVGMEEKHF--VLVHGVNHGAWCWYKLKA--RLVAGGHRVTAVDLAASG 48
E + G + F +L+HG+ + W L RL G+R A+DL G
Sbjct: 23 EALPGSGQARFSVLLLHGIRFSSETWQNLGTLHRLAQAGYRAVAIDLPGLG 73
>pdb|2QS9|A Chain A, Crystal Structure Of The Human Retinoblastoma-Binding
Protein 9 (Rbbp-9). Nesg Target Hr2978
pdb|2QS9|B Chain B, Crystal Structure Of The Human Retinoblastoma-Binding
Protein 9 (Rbbp-9). Nesg Target Hr2978
Length = 194
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 77 EEKVILVGHSLGGVTLALAADKFPHKISVAVFVTAFMPD 115
+EK I++GHS G + A+ H++ V V+A+ D
Sbjct: 66 DEKTIIIGHSSGAIAAXRYAET--HRVYAIVLVSAYTSD 102
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 51 MKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVGHSLGGVTLALAADKFPHKISVAVFV 109
+ IED + ++ + + P + LVGHS GGV ++ A +P I V +
Sbjct: 99 LNEIEDANA-------ILNYVKTDPHVRNIYLVGHSQGGVVASMLAGLYPDLIKKVVLL 150
>pdb|2YRF|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase From Bacillus Subtilis Complexed With Sulfate
Ion
pdb|2YRF|B Chain B, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase From Bacillus Subtilis Complexed With Sulfate
Ion
pdb|2YVK|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|B Chain B, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|C Chain C, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|D Chain D, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
Length = 374
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 26 YKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLMEVLASLPAEEKVILVG- 84
Y + R V G R+TA +L GI++ I D H E ++ A + +++ G
Sbjct: 211 YACETRPVLQGSRLTAWELMQGGIDVTLITDSMAAHTMKE--KQISAVIVGADRIAKNGD 268
Query: 85 --HSLGGVTLALAADKFPHKISVAVFVTAF 112
+ +G LA+ A+ F VA ++ F
Sbjct: 269 TANKIGTYGLAILANAFDIPFFVAAPLSTF 298
>pdb|2CFC|A Chain A, Structural Basis For Stereo Selectivity In The (R)- And
(S)- Hydroxypropylethane Thiosulfonate Dehydrogenases
pdb|2CFC|B Chain B, Structural Basis For Stereo Selectivity In The (R)- And
(S)- Hydroxypropylethane Thiosulfonate Dehydrogenases
pdb|2CFC|C Chain C, Structural Basis For Stereo Selectivity In The (R)- And
(S)- Hydroxypropylethane Thiosulfonate Dehydrogenases
pdb|2CFC|D Chain D, Structural Basis For Stereo Selectivity In The (R)- And
(S)- Hydroxypropylethane Thiosulfonate Dehydrogenases
Length = 250
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 10 KHFVLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAASGINMKRIEDVHTFHAYSEPLME 69
+V G + G + R +A G RV A+DL+A ++ H +HAY++ ++
Sbjct: 2 SRVAIVTGASSG--NGLAIATRFLARGDRVAALDLSAE--TLEETARTH-WHAYADKVLR 56
Query: 70 VLASLPAEEKV 80
V A + E V
Sbjct: 57 VRADVADEGDV 67
>pdb|3CXU|A Chain A, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
pdb|3CXU|B Chain B, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
Length = 328
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 4/82 (4%)
Query: 13 VLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAA----SGINMKRIEDVHTFHAYSEPLM 68
+ +HG + W L G+R A DL +G + H + +
Sbjct: 35 LFIHGFPELWYSWRHQMVYLAERGYRAVAPDLRGYGDTTGAPLNDPSKFSILHLVGDVVA 94
Query: 69 EVLASLPAEEKVILVGHSLGGV 90
+ A P EEKV +V H G +
Sbjct: 95 LLEAIAPNEEKVFVVAHDWGAL 116
>pdb|2CJP|A Chain A, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
pdb|2CJP|B Chain B, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
Length = 328
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 4/82 (4%)
Query: 13 VLVHGVNHGAWCWYKLKARLVAGGHRVTAVDLAA----SGINMKRIEDVHTFHAYSEPLM 68
+ +HG + W L G+R A DL +G + H + +
Sbjct: 35 LFIHGFPELWYSWRHQMVYLAERGYRAVAPDLRGYGDTTGAPLNDPSKFSILHLVGDVVA 94
Query: 69 EVLASLPAEEKVILVGHSLGGV 90
+ A P EEKV +V H G +
Sbjct: 95 LLEAIAPNEEKVFVVAHDWGAL 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,663,838
Number of Sequences: 62578
Number of extensions: 240734
Number of successful extensions: 932
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 884
Number of HSP's gapped (non-prelim): 76
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)