BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025846
         (247 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3AFE|A Chain A, Crystal Structure Of The Hsaa Monooxygenase From
           M.Tuberculosis
 pdb|3AFE|B Chain B, Crystal Structure Of The Hsaa Monooxygenase From
           M.Tuberculosis
 pdb|3AFE|C Chain C, Crystal Structure Of The Hsaa Monooxygenase From
           M.Tuberculosis
 pdb|3AFE|D Chain D, Crystal Structure Of The Hsaa Monooxygenase From
           M.Tuberculosis
 pdb|3AFF|A Chain A, Crystal Structure Of The Hsaa Monooxygenase From M.
           Tuberculosis
 pdb|3AFF|B Chain B, Crystal Structure Of The Hsaa Monooxygenase From M.
           Tuberculosis
          Length = 394

 Score = 28.9 bits (63), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 132 TGLEKNLFGNHPVSLAVAESRGPPPAFASDPIVNVNASSSPSKDGINITEGY 183
           TG   ++ G H   LA+ + R     +  DP   +++S +P   G+ +  GY
Sbjct: 82  TGWVSSIVGVHNWHLALFDQRAQEEVWGEDPSTRISSSYAPMGAGVVVDGGY 133


>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
          Length = 69

 Score = 28.1 bits (61), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 10/56 (17%)

Query: 53  KCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTI 108
           KC  C ++LEE  G +  RL C+H+ H  C+   + +           CP+C   I
Sbjct: 16  KCTICLSILEE--GEDVRRLPCMHLFHQVCVDQWLIT--------NKKCPICRVDI 61


>pdb|4AIE|A Chain A, Structure Of Glucan-1,6-Alpha-Glucosidase From
           Lactobacillus Acidophilus Ncfm
          Length = 549

 Score = 27.7 bits (60), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 10/56 (17%)

Query: 110 PPKNVKDSGSRLHSLLKEAIMLTGLEKNLFGNHPVSLAVAESRGPPPAFA---SDP 162
           P KN++++G  LH  L+E      + K  FG   V + V E+    P  A   SDP
Sbjct: 209 PDKNIRENGPMLHPYLQE------MNKATFGKRDV-MTVGETWNATPKIAEEYSDP 257


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,792,931
Number of Sequences: 62578
Number of extensions: 310755
Number of successful extensions: 606
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 602
Number of HSP's gapped (non-prelim): 7
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)