Query 025846
Match_columns 247
No_of_seqs 206 out of 673
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 18:54:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025846.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025846hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ep4_A Ring finger protein 24; 99.4 1.6E-13 5.5E-18 98.2 5.9 54 52-115 16-69 (74)
2 1x4j_A Ring finger protein 38; 99.4 1.9E-13 6.4E-18 98.5 4.0 51 51-111 23-73 (75)
3 2l0b_A E3 ubiquitin-protein li 99.4 4.7E-13 1.6E-17 100.6 4.8 51 51-111 40-90 (91)
4 1iym_A EL5; ring-H2 finger, ub 99.4 4.3E-13 1.5E-17 90.8 4.1 48 52-109 6-54 (55)
5 2kiz_A E3 ubiquitin-protein li 99.3 7.6E-13 2.6E-17 93.5 5.3 50 52-111 15-64 (69)
6 1v87_A Deltex protein 2; ring- 99.3 4E-13 1.4E-17 103.4 4.0 71 34-110 11-94 (114)
7 2ecm_A Ring finger and CHY zin 99.3 1E-12 3.5E-17 88.7 4.5 49 52-109 6-54 (55)
8 2ecl_A Ring-box protein 2; RNF 99.3 8.5E-13 2.9E-17 97.6 3.9 50 52-110 16-76 (81)
9 2ect_A Ring finger protein 126 99.3 2.1E-12 7.2E-17 93.2 4.8 52 51-112 15-66 (78)
10 2d8s_A Cellular modulator of i 99.2 8.6E-12 2.9E-16 93.6 5.0 55 52-115 16-75 (80)
11 2ea6_A Ring finger protein 4; 99.2 2.1E-11 7.1E-16 85.1 5.2 52 51-110 15-68 (69)
12 3ng2_A RNF4, snurf, ring finge 99.2 1.7E-11 5.8E-16 86.4 4.2 52 52-111 11-64 (71)
13 2ct2_A Tripartite motif protei 99.2 4.8E-11 1.6E-15 87.1 6.5 55 51-111 15-69 (88)
14 2xeu_A Ring finger protein 4; 99.1 3.2E-11 1.1E-15 83.0 4.5 52 52-111 4-57 (64)
15 3dpl_R Ring-box protein 1; ubi 99.1 7.4E-11 2.5E-15 92.7 5.6 49 52-108 38-99 (106)
16 2ysl_A Tripartite motif-contai 99.1 1.1E-10 3.6E-15 82.9 5.6 50 52-111 21-70 (73)
17 1chc_A Equine herpes virus-1 r 99.1 4.9E-11 1.7E-15 83.7 3.8 47 52-110 6-52 (68)
18 2csy_A Zinc finger protein 183 99.1 5.6E-11 1.9E-15 86.6 3.8 46 51-109 15-60 (81)
19 3lrq_A E3 ubiquitin-protein li 99.1 9.1E-11 3.1E-15 89.5 4.7 65 52-131 23-88 (100)
20 2ecy_A TNF receptor-associated 99.1 1.4E-10 4.9E-15 81.4 5.0 48 52-111 16-63 (66)
21 2d8t_A Dactylidin, ring finger 99.1 5.4E-11 1.9E-15 84.9 2.8 46 52-110 16-61 (71)
22 2djb_A Polycomb group ring fin 99.1 2E-10 7E-15 82.1 5.6 48 51-111 15-63 (72)
23 2yur_A Retinoblastoma-binding 99.0 2E-10 7E-15 82.8 5.5 52 51-113 15-67 (74)
24 3ztg_A E3 ubiquitin-protein li 99.0 4.3E-10 1.5E-14 83.3 6.7 52 51-113 13-65 (92)
25 1t1h_A Gspef-atpub14, armadill 99.0 4.2E-10 1.4E-14 81.1 6.3 48 52-111 9-56 (78)
26 3fl2_A E3 ubiquitin-protein li 99.0 3.9E-10 1.3E-14 88.3 6.7 51 52-114 53-103 (124)
27 2ecn_A Ring finger protein 141 99.0 5.8E-11 2E-15 84.0 1.1 47 52-112 16-62 (70)
28 1g25_A CDK-activating kinase a 99.0 3.6E-10 1.2E-14 79.2 5.1 52 52-111 4-56 (65)
29 1jm7_A BRCA1, breast cancer ty 99.0 7.4E-10 2.5E-14 84.2 6.7 69 52-130 22-91 (112)
30 2ecw_A Tripartite motif-contai 99.0 8.6E-10 2.9E-14 79.3 6.2 54 51-111 19-72 (85)
31 4a0k_B E3 ubiquitin-protein li 99.0 7.8E-11 2.7E-15 94.6 0.6 49 52-108 49-110 (117)
32 2ysj_A Tripartite motif-contai 99.0 7.5E-10 2.6E-14 76.9 5.2 44 51-104 20-63 (63)
33 4ayc_A E3 ubiquitin-protein li 98.9 3.5E-10 1.2E-14 90.6 3.8 46 52-110 54-99 (138)
34 4ap4_A E3 ubiquitin ligase RNF 98.9 5.5E-10 1.9E-14 86.1 4.4 52 52-111 8-61 (133)
35 2ecj_A Tripartite motif-contai 98.9 9.2E-10 3.1E-14 74.6 4.6 43 52-104 16-58 (58)
36 2y43_A E3 ubiquitin-protein li 98.9 1.3E-09 4.3E-14 82.1 5.3 47 52-111 23-70 (99)
37 2ecv_A Tripartite motif-contai 98.9 1.4E-09 4.8E-14 78.1 5.1 53 52-111 20-72 (85)
38 2egp_A Tripartite motif-contai 98.9 6.3E-10 2.2E-14 79.8 2.9 54 52-111 13-66 (79)
39 4ap4_A E3 ubiquitin ligase RNF 98.9 1E-09 3.5E-14 84.5 4.0 52 52-111 73-126 (133)
40 1z6u_A NP95-like ring finger p 98.9 2.8E-09 9.6E-14 87.4 6.6 51 52-114 79-129 (150)
41 2ckl_B Ubiquitin ligase protei 98.9 1.7E-09 5.7E-14 88.5 5.2 50 52-113 55-105 (165)
42 3l11_A E3 ubiquitin-protein li 98.8 1.6E-09 5.4E-14 83.7 3.7 67 52-131 16-88 (115)
43 2ckl_A Polycomb group ring fin 98.8 5.5E-09 1.9E-13 79.9 5.9 47 52-111 16-63 (108)
44 1rmd_A RAG1; V(D)J recombinati 98.8 4.5E-09 1.5E-13 81.2 5.4 48 52-111 24-71 (116)
45 3hct_A TNF receptor-associated 98.7 4.3E-09 1.5E-13 82.0 3.6 48 52-111 19-66 (118)
46 2ct0_A Non-SMC element 1 homol 98.7 4.4E-09 1.5E-13 78.5 3.4 47 52-108 16-62 (74)
47 1e4u_A Transcriptional repress 98.7 1.7E-08 5.7E-13 75.1 4.8 51 51-111 11-63 (78)
48 1jm7_B BARD1, BRCA1-associated 98.6 2.3E-08 8E-13 77.7 3.5 45 52-111 23-68 (117)
49 2c2l_A CHIP, carboxy terminus 98.5 4.6E-08 1.6E-12 83.7 4.1 70 52-135 209-278 (281)
50 1bor_A Transcription factor PM 98.5 1.4E-08 4.8E-13 70.0 0.3 46 52-113 7-52 (56)
51 1wgm_A Ubiquitin conjugation f 98.5 1.2E-07 3.9E-12 73.1 5.2 70 52-136 23-93 (98)
52 3knv_A TNF receptor-associated 98.5 2.4E-08 8.1E-13 81.3 1.2 48 52-111 32-79 (141)
53 2y1n_A E3 ubiquitin-protein li 98.4 1.4E-07 4.7E-12 89.3 4.6 48 52-111 333-380 (389)
54 4ic3_A E3 ubiquitin-protein li 98.4 1.2E-07 4.1E-12 68.7 2.7 41 52-109 25-66 (74)
55 3hcs_A TNF receptor-associated 98.4 1.5E-07 5.2E-12 77.0 3.6 48 52-111 19-66 (170)
56 2yu4_A E3 SUMO-protein ligase 98.3 4E-07 1.4E-11 68.9 4.7 49 52-107 8-59 (94)
57 2kr4_A Ubiquitin conjugation f 98.3 4.5E-07 1.5E-11 67.6 4.9 47 52-111 15-61 (85)
58 2kre_A Ubiquitin conjugation f 98.3 6.2E-07 2.1E-11 69.2 5.2 47 52-111 30-76 (100)
59 1vyx_A ORF K3, K3RING; zinc-bi 98.3 4.7E-07 1.6E-11 64.4 3.5 46 52-108 7-57 (60)
60 3k1l_B Fancl; UBC, ring, RWD, 98.2 2.1E-07 7.1E-12 87.8 1.1 57 52-109 309-372 (381)
61 2f42_A STIP1 homology and U-bo 98.2 9.9E-07 3.4E-11 75.4 5.0 70 52-135 107-176 (179)
62 2vje_A E3 ubiquitin-protein li 98.2 9.3E-07 3.2E-11 62.7 3.5 45 52-109 9-56 (64)
63 2ecg_A Baculoviral IAP repeat- 98.2 6.1E-07 2.1E-11 64.9 2.3 42 52-110 26-68 (75)
64 2vje_B MDM4 protein; proto-onc 98.1 1.1E-06 3.6E-11 62.2 2.9 47 52-109 8-55 (63)
65 1wim_A KIAA0161 protein; ring 98.1 2E-07 6.8E-12 69.9 -1.2 53 52-107 6-61 (94)
66 2ea5_A Cell growth regulator w 97.9 5.8E-06 2E-10 59.5 2.9 42 52-110 16-58 (68)
67 2yho_A E3 ubiquitin-protein li 97.8 7.8E-06 2.7E-10 60.3 1.9 42 52-110 19-61 (79)
68 3t6p_A Baculoviral IAP repeat- 97.6 1.2E-05 4.1E-10 74.5 1.3 41 52-109 296-337 (345)
69 3htk_C E3 SUMO-protein ligase 97.4 5.7E-05 1.9E-09 68.5 2.5 49 51-110 181-232 (267)
70 3nw0_A Non-structural maintena 97.4 6.5E-05 2.2E-09 66.2 2.5 51 51-112 180-230 (238)
71 2bay_A PRE-mRNA splicing facto 97.3 0.00013 4.6E-09 51.6 2.6 47 52-111 4-51 (61)
72 3vk6_A E3 ubiquitin-protein li 96.7 0.0015 5.1E-08 51.7 4.3 46 53-110 3-49 (101)
73 2lri_C Autoimmune regulator; Z 94.3 0.043 1.5E-06 39.6 4.0 50 52-111 13-63 (66)
74 1f62_A Transcription factor WS 88.4 0.26 8.9E-06 32.9 2.4 47 53-106 2-49 (51)
75 2l5u_A Chromodomain-helicase-D 85.5 0.35 1.2E-05 33.9 1.8 46 51-106 11-57 (61)
76 1mm2_A MI2-beta; PHD, zinc fin 80.8 0.38 1.3E-05 33.7 0.4 48 51-108 9-57 (61)
77 2yql_A PHD finger protein 21A; 79.0 0.17 5.9E-06 34.7 -1.9 46 51-106 9-55 (56)
78 3o36_A Transcription intermedi 78.9 1.3 4.5E-05 36.5 3.1 49 52-110 5-54 (184)
79 4bbq_A Lysine-specific demethy 78.6 0.2 6.8E-06 38.5 -1.8 34 73-106 80-113 (117)
80 2lv9_A Histone-lysine N-methyl 75.4 1.8 6.1E-05 32.9 2.8 60 38-106 14-75 (98)
81 3u5n_A E3 ubiquitin-protein li 74.5 0.62 2.1E-05 39.4 -0.0 49 52-110 8-57 (207)
82 2ysm_A Myeloid/lymphoid or mix 73.9 0.52 1.8E-05 36.1 -0.6 80 21-111 24-108 (111)
83 1we9_A PHD finger family prote 73.2 0.89 3E-05 31.5 0.5 50 52-106 7-57 (64)
84 2ysm_A Myeloid/lymphoid or mix 72.9 1.2 3.9E-05 34.1 1.2 49 51-106 7-56 (111)
85 1wil_A KIAA1045 protein; ring 72.5 3.1 0.00011 32.1 3.4 49 51-104 15-73 (89)
86 2k16_A Transcription initiatio 70.3 1.8 6.3E-05 30.8 1.7 51 51-108 18-69 (75)
87 1fp0_A KAP-1 corepressor; PHD 70.3 1.2 4.2E-05 34.0 0.7 46 52-107 26-72 (88)
88 3v43_A Histone acetyltransfera 68.8 1.2 4.1E-05 34.4 0.4 48 53-106 63-111 (112)
89 2lbm_A Transcriptional regulat 68.1 3.8 0.00013 33.7 3.4 45 52-106 64-116 (142)
90 1weu_A Inhibitor of growth fam 65.9 3.8 0.00013 31.3 2.7 47 52-109 37-87 (91)
91 3asl_A E3 ubiquitin-protein li 65.0 1.7 5.7E-05 31.3 0.5 48 53-106 20-68 (70)
92 1wew_A DNA-binding family prot 64.3 2.4 8.3E-05 30.8 1.3 56 50-111 15-76 (78)
93 2puy_A PHD finger protein 21A; 64.3 0.8 2.7E-05 31.7 -1.3 47 52-108 6-53 (60)
94 2e6s_A E3 ubiquitin-protein li 64.2 1.8 6.3E-05 31.8 0.6 49 52-106 27-76 (77)
95 1iml_A CRIP, cysteine rich int 64.0 2.4 8.1E-05 29.6 1.2 39 52-110 1-39 (76)
96 1fre_A Nuclear factor XNF7; zi 63.7 3.7 0.00013 25.8 1.9 27 7-33 10-36 (42)
97 3lqh_A Histone-lysine N-methyl 62.8 1.2 4.1E-05 37.8 -0.7 54 52-108 3-64 (183)
98 2yt5_A Metal-response element- 62.8 2.9 9.9E-05 29.0 1.4 50 52-106 7-60 (66)
99 3v43_A Histone acetyltransfera 62.4 7.1 0.00024 30.0 3.7 50 52-105 6-62 (112)
100 1x63_A Skeletal muscle LIM-pro 62.3 8 0.00027 27.0 3.7 41 52-111 16-56 (82)
101 2ro1_A Transcription intermedi 61.9 1.7 5.8E-05 36.5 0.1 48 52-108 3-50 (189)
102 2jun_A Midline-1; B-BOX, TRIM, 61.6 3.8 0.00013 30.0 2.0 33 52-87 4-38 (101)
103 1wen_A Inhibitor of growth fam 61.5 4.4 0.00015 29.3 2.2 46 51-107 16-65 (71)
104 1xwh_A Autoimmune regulator; P 60.7 0.97 3.3E-05 31.9 -1.4 46 52-107 9-55 (66)
105 1wyh_A SLIM 2, skeletal muscle 60.2 6.8 0.00023 26.6 3.0 40 52-110 6-45 (72)
106 2cs3_A Protein C14ORF4, MY039 60.1 7.3 0.00025 30.0 3.3 57 51-113 15-73 (93)
107 2egq_A FHL1 protein; LIM domai 58.9 7.8 0.00027 26.7 3.1 40 52-110 16-58 (77)
108 3shb_A E3 ubiquitin-protein li 58.2 1.5 5E-05 32.4 -0.8 47 53-106 28-76 (77)
109 3mjh_B Early endosome antigen 58.1 1.9 6.5E-05 27.7 -0.2 13 97-109 4-16 (34)
110 2rsd_A E3 SUMO-protein ligase 58.0 0.62 2.1E-05 33.1 -2.8 50 52-105 11-63 (68)
111 2kw0_A CCMH protein; oxidoredu 57.7 9.7 0.00033 29.2 3.7 29 98-131 23-51 (90)
112 1wep_A PHF8; structural genomi 55.9 7.8 0.00027 28.0 2.8 53 52-110 13-66 (79)
113 2ri7_A Nucleosome-remodeling f 54.8 1.6 5.6E-05 35.4 -1.2 50 52-107 9-59 (174)
114 2ko5_A Ring finger protein Z; 53.5 5.8 0.0002 31.1 1.8 53 43-110 20-73 (99)
115 1wee_A PHD finger family prote 52.3 1 3.5E-05 32.2 -2.5 55 49-110 14-69 (72)
116 1x6a_A LIMK-2, LIM domain kina 52.0 10 0.00035 26.5 2.8 38 52-110 16-53 (81)
117 3ql9_A Transcriptional regulat 51.6 20 0.00069 28.9 4.8 47 52-106 58-110 (129)
118 2cu8_A Cysteine-rich protein 2 50.7 5.7 0.0002 27.5 1.3 39 52-110 10-48 (76)
119 3o70_A PHD finger protein 13; 50.5 4.1 0.00014 29.1 0.5 46 52-106 20-66 (68)
120 2dj7_A Actin-binding LIM prote 48.5 8.3 0.00029 27.4 1.9 39 51-109 15-53 (80)
121 2kwj_A Zinc finger protein DPF 48.5 5.5 0.00019 30.7 1.0 35 52-86 2-41 (114)
122 2did_A Tripartite motif protei 48.4 4.5 0.00015 26.7 0.4 30 7-36 15-44 (53)
123 2l43_A N-teminal domain from h 48.0 17 0.00058 27.0 3.6 52 50-108 24-76 (88)
124 1wev_A Riken cDNA 1110020M19; 47.2 1.9 6.3E-05 32.3 -1.9 49 52-106 17-71 (88)
125 1g47_A Pinch protein; LIM doma 47.2 11 0.00037 25.9 2.3 41 52-111 12-52 (77)
126 2g6q_A Inhibitor of growth pro 46.9 2.7 9.1E-05 29.6 -1.0 44 52-106 12-59 (62)
127 2e6r_A Jumonji/ARID domain-con 46.9 1.9 6.6E-05 32.5 -1.8 48 52-106 17-65 (92)
128 2ehe_A Four and A half LIM dom 45.9 19 0.00065 25.1 3.4 39 52-109 16-54 (82)
129 2l3k_A Rhombotin-2, linker, LI 45.8 9.5 0.00033 29.1 2.0 40 53-111 10-49 (123)
130 1x61_A Thyroid receptor intera 44.5 16 0.00053 24.8 2.7 39 52-109 6-44 (72)
131 2vnf_A ING 4, P29ING4, inhibit 44.4 2.9 0.0001 29.1 -1.1 44 52-106 11-58 (60)
132 3ask_A E3 ubiquitin-protein li 44.2 5.4 0.00018 35.2 0.3 47 52-106 175-224 (226)
133 2ku3_A Bromodomain-containing 44.2 19 0.00067 25.8 3.3 48 51-106 16-65 (71)
134 3c6w_A P28ING5, inhibitor of g 43.7 3.1 0.00011 29.0 -1.0 44 52-106 10-57 (59)
135 1x4k_A Skeletal muscle LIM-pro 43.4 12 0.0004 25.4 1.9 40 52-110 6-45 (72)
136 2hl7_A Cytochrome C-type bioge 43.1 16 0.00055 27.5 2.8 29 98-131 26-54 (84)
137 1x4l_A Skeletal muscle LIM-pro 42.2 18 0.00063 24.5 2.8 40 52-109 6-46 (72)
138 2d8u_A Ubiquitin ligase TRIM63 42.2 8.2 0.00028 26.1 1.0 29 8-36 17-45 (64)
139 3i2d_A E3 SUMO-protein ligase 42.1 21 0.00072 33.6 4.0 50 52-112 250-302 (371)
140 3ddt_A E3 ubiquitin-protein li 41.9 5 0.00017 26.0 -0.2 28 8-35 15-42 (48)
141 2cuq_A Four and A half LIM dom 41.8 20 0.00069 24.8 3.0 37 52-109 16-52 (80)
142 2vpb_A Hpygo1, pygopus homolog 41.7 13 0.00045 26.3 2.0 48 52-105 9-64 (65)
143 1zfo_A LAsp-1; LIM domain, zin 40.9 7.7 0.00026 23.6 0.6 28 52-83 4-31 (31)
144 4gne_A Histone-lysine N-methyl 40.9 13 0.00045 28.9 2.1 45 50-106 14-61 (107)
145 2co8_A NEDD9 interacting prote 40.4 17 0.00059 25.7 2.5 40 51-110 15-54 (82)
146 1x68_A FHL5 protein; four-and- 39.6 17 0.00058 25.1 2.3 40 52-109 6-46 (76)
147 2kwj_A Zinc finger protein DPF 38.8 2.1 7.3E-05 33.1 -2.8 78 21-106 25-107 (114)
148 2yrg_A Tripartite motif-contai 37.3 7.2 0.00025 26.6 0.0 30 7-36 21-50 (59)
149 3f6q_B LIM and senescent cell 36.5 17 0.00057 24.3 1.8 41 52-111 12-52 (72)
150 1m3v_A FLIN4, fusion of the LI 35.2 29 0.00099 26.3 3.2 49 52-111 33-82 (122)
151 2d8z_A Four and A half LIM dom 34.1 20 0.00069 24.1 2.0 38 52-110 6-43 (70)
152 1x3h_A Leupaxin; paxillin fami 33.5 33 0.0011 23.6 3.0 39 52-111 16-54 (80)
153 2kgg_A Histone demethylase jar 33.2 4.6 0.00016 27.1 -1.5 47 53-105 4-52 (52)
154 2jvx_A NF-kappa-B essential mo 33.1 11 0.00039 23.1 0.4 12 97-108 2-13 (28)
155 4fo9_A E3 SUMO-protein ligase 32.3 35 0.0012 32.0 3.8 50 52-112 216-268 (360)
156 2cup_A Skeletal muscle LIM-pro 31.7 17 0.00056 26.3 1.2 29 52-83 67-95 (101)
157 2cur_A Skeletal muscle LIM-pro 31.4 27 0.00093 23.4 2.2 37 52-109 6-42 (69)
158 2cor_A Pinch protein; LIM doma 31.2 31 0.0011 24.2 2.6 38 52-110 16-53 (79)
159 2jtn_A LIM domain-binding prot 30.4 17 0.00057 29.5 1.2 41 52-111 120-160 (182)
160 1z2q_A LM5-1; membrane protein 30.3 28 0.00094 25.4 2.2 41 39-86 12-55 (84)
161 2dar_A PDZ and LIM domain prot 30.0 32 0.0011 24.5 2.5 38 52-110 26-63 (90)
162 2yw8_A RUN and FYVE domain-con 29.6 27 0.00092 25.3 2.1 40 40-86 11-53 (82)
163 3kqi_A GRC5, PHD finger protei 29.3 29 0.00099 24.7 2.2 52 52-110 10-64 (75)
164 3o7a_A PHD finger protein 13 v 29.2 7.9 0.00027 25.9 -0.8 47 52-106 4-51 (52)
165 2xqn_T Testin, TESS; metal-bin 28.9 39 0.0013 25.3 3.0 47 52-112 31-77 (126)
166 2d8x_A Protein pinch; LIM doma 28.0 36 0.0012 22.8 2.4 39 52-111 6-44 (70)
167 1x4u_A Zinc finger, FYVE domai 27.9 28 0.00097 25.3 1.9 40 40-86 6-48 (84)
168 3t7l_A Zinc finger FYVE domain 27.6 25 0.00086 26.0 1.6 41 40-87 12-55 (90)
169 1v6g_A Actin binding LIM prote 27.6 34 0.0012 23.7 2.3 38 52-110 16-53 (81)
170 2d8y_A Eplin protein; LIM doma 27.5 32 0.0011 24.5 2.2 40 52-111 16-55 (91)
171 2iyb_E Testin, TESS, TES; LIM 27.2 25 0.00086 23.6 1.5 39 52-109 3-43 (65)
172 1nyp_A Pinch protein; LIM doma 26.7 37 0.0013 22.5 2.3 38 52-110 6-43 (66)
173 1x62_A C-terminal LIM domain p 26.6 31 0.001 24.0 1.9 38 51-109 15-52 (79)
174 3m62_A Ubiquitin conjugation f 26.5 64 0.0022 33.9 4.9 69 52-135 892-961 (968)
175 2rgt_A Fusion of LIM/homeobox 26.5 31 0.0011 27.5 2.1 41 52-111 66-106 (169)
176 1wig_A KIAA1808 protein; LIM d 25.8 45 0.0015 22.9 2.6 38 52-110 6-43 (73)
177 2csv_A Tripartite motif protei 24.7 21 0.00072 24.8 0.7 29 7-36 25-53 (72)
178 2xb1_A Pygopus homolog 2, B-ce 23.7 28 0.00097 26.6 1.3 54 52-111 4-65 (105)
179 1x64_A Alpha-actinin-2 associa 23.6 43 0.0015 23.7 2.2 39 52-111 26-64 (89)
180 2l4z_A DNA endonuclease RBBP8, 23.2 32 0.0011 26.5 1.5 38 52-109 62-99 (123)
181 1rut_X Flinc4, fusion protein 22.9 38 0.0013 27.5 2.0 39 53-110 71-109 (188)
182 2egm_A Tripartite motif-contai 22.4 6.8 0.00023 26.6 -2.2 25 7-31 25-49 (57)
183 2xjy_A Rhombotin-2; oncoprotei 22.3 70 0.0024 23.9 3.3 49 53-111 31-79 (131)
184 6rxn_A Rubredoxin; electron tr 22.0 36 0.0012 22.9 1.4 13 95-107 27-39 (46)
185 2dja_A Midline-2; tripartite m 21.9 16 0.00055 25.9 -0.4 29 8-36 27-55 (84)
186 1joc_A EEA1, early endosomal a 21.4 38 0.0013 26.6 1.6 40 40-86 61-103 (125)
187 4rxn_A Rubredoxin; electron tr 20.1 41 0.0014 23.3 1.4 12 96-107 34-45 (54)
No 1
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.6e-13 Score=98.24 Aligned_cols=54 Identities=24% Similarity=0.582 Sum_probs=46.3
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCCCC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNVK 115 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~~~i~ 115 (247)
..|+||++.|...+ .++.|+|+|+||..||.+|++... +||+||++|.+...+.
T Consensus 16 ~~C~IC~~~~~~~~--~~~~~~C~H~f~~~Ci~~~~~~~~--------~CP~Cr~~~~~~~~~~ 69 (74)
T 2ep4_A 16 ELCAVCLEDFKPRD--ELGICPCKHAFHRKCLIKWLEVRK--------VCPLCNMPVLQLAQLS 69 (74)
T ss_dssp CBCSSSCCBCCSSS--CEEEETTTEEEEHHHHHHHHHHCS--------BCTTTCCBCSSCCSCC
T ss_pred CCCcCCCcccCCCC--cEEEcCCCCEecHHHHHHHHHcCC--------cCCCcCcccccccccC
Confidence 78999999998875 677889999999999999998742 5999999998765543
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1.9e-13 Score=98.53 Aligned_cols=51 Identities=25% Similarity=0.567 Sum_probs=44.3
Q ss_pred CCccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 51 PPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
...|+||++.|..++ .++.|+|+|+||..||.+|++.. .+||+||++|.|.
T Consensus 23 ~~~C~IC~~~~~~~~--~~~~l~C~H~fh~~Ci~~w~~~~--------~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQ--LLRVLPCNHEFHAKCVDKWLKAN--------RTCPICRADSGPS 73 (75)
T ss_dssp CCEETTTTEECCBTC--EEEEETTTEEEETTHHHHHHHHC--------SSCTTTCCCCCCC
T ss_pred CCCCeECCcccCCCC--eEEEECCCCHhHHHHHHHHHHcC--------CcCcCcCCcCCCC
Confidence 378999999998875 67779999999999999999874 2599999999874
No 3
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.36 E-value=4.7e-13 Score=100.64 Aligned_cols=51 Identities=25% Similarity=0.548 Sum_probs=44.0
Q ss_pred CCccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 51 PPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
...|+||++.|..++ .++.|+|+|+||..||+.|++.. .+||+||++|.++
T Consensus 40 ~~~C~IC~~~~~~~~--~~~~l~C~H~Fh~~Ci~~wl~~~--------~~CP~Cr~~~~~~ 90 (91)
T 2l0b_A 40 EMCCPICCSEYVKGD--VATELPCHHYFHKPCVSIWLQKS--------GTCPVCRCMFPPP 90 (91)
T ss_dssp CSEETTTTEECCTTC--EEEEETTTEEEEHHHHHHHHTTT--------CBCTTTCCBSSCC
T ss_pred CCCCcccChhhcCCC--cEEecCCCChHHHHHHHHHHHcC--------CcCcCcCccCCCC
Confidence 368999999998876 67789999999999999999753 2699999998763
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.35 E-value=4.3e-13 Score=90.77 Aligned_cols=48 Identities=35% Similarity=0.674 Sum_probs=41.6
Q ss_pred CccccccccccccccCCeEEec-CCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 025846 52 PKCCQCQAVLEEESGSETTRLG-CLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~-C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~ 109 (247)
..|+||++.|.+++ .++.|+ |+|+||..||.+|++.. .+||+||++|.
T Consensus 6 ~~C~IC~~~~~~~~--~~~~~~~C~H~f~~~Ci~~w~~~~--------~~CP~Cr~~~~ 54 (55)
T 1iym_A 6 VECAVCLAELEDGE--EARFLPRCGHGFHAECVDMWLGSH--------STCPLCRLTVV 54 (55)
T ss_dssp CCCTTTCCCCCTTS--CCEECSSSCCEECTTHHHHTTTTC--------CSCSSSCCCSC
T ss_pred CcCccCCccccCCC--ceEECCCCCCcccHHHHHHHHHcC--------CcCcCCCCEeE
Confidence 67999999999876 788887 99999999999999763 25999999874
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.35 E-value=7.6e-13 Score=93.52 Aligned_cols=50 Identities=32% Similarity=0.749 Sum_probs=43.6
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
..|+||++.|..++ .++.|+|+|+||..||.+|+... .+||+||+.|...
T Consensus 15 ~~C~IC~~~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 15 EKCTICLSILEEGE--DVRRLPCMHLFHQVCVDQWLITN--------KKCPICRVDIEAQ 64 (69)
T ss_dssp CSBTTTTBCCCSSS--CEEECTTSCEEEHHHHHHHHHHC--------SBCTTTCSBSCSC
T ss_pred CCCeeCCccccCCC--cEEEeCCCCHHHHHHHHHHHHcC--------CCCcCcCccccCc
Confidence 78999999998765 68889999999999999999874 2599999998764
No 6
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.35 E-value=4e-13 Score=103.37 Aligned_cols=71 Identities=25% Similarity=0.410 Sum_probs=49.9
Q ss_pred eeeeecccccccCCCCCCCcccccccccccccc------------CCeE-EecCCCccCHHHHHHHHhcCCCCCCCCCCC
Q 025846 34 CVVRTYSEWVIDGEYDWPPKCCQCQAVLEEESG------------SETT-RLGCLHVIHTSCLVSHIKSFPPHTAPAGYV 100 (247)
Q Consensus 34 CvVqsYlqWL~Dsdyd~~~~C~ICle~L~~gD~------------~evv-RL~C~HvFH~~CLd~WL~~~p~nTAPagy~ 100 (247)
=++++|++.+.+.. + ..|+||+++|.+.+. ..++ .|+|+|+||.+||+.|+..... ....+
T Consensus 11 ~~i~~~~~~~~~~~-~--~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~---~~~~~ 84 (114)
T 1v87_A 11 QVIRKYTEELKVAP-E--EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK---DGSLQ 84 (114)
T ss_dssp HHHHHHEEECSSCC-S--CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCC---SSCCB
T ss_pred HHHHHHHHhccCCC-C--CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccC---CCCCc
Confidence 35677888876553 3 589999999976420 1233 4689999999999999964211 12457
Q ss_pred CCCCCCCccC
Q 025846 101 CPLCSTTIWP 110 (247)
Q Consensus 101 CP~Cr~~I~P 110 (247)
||+||+.+..
T Consensus 85 CP~CR~~~~~ 94 (114)
T 1v87_A 85 CPSCKTIYGE 94 (114)
T ss_dssp CTTTCCBSSS
T ss_pred CCCCCCccCC
Confidence 9999997753
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.32 E-value=1e-12 Score=88.69 Aligned_cols=49 Identities=29% Similarity=0.577 Sum_probs=41.6
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~ 109 (247)
..|+||++.|.+++ +.++.|+|+|+||..||.+|++.. .+||+||++|-
T Consensus 6 ~~C~IC~~~~~~~~-~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~Cr~~~~ 54 (55)
T 2ecm_A 6 SGCPICLEDIHTSR-VVAHVLPCGHLLHRTCYEEMLKEG--------YRCPLCSGPSS 54 (55)
T ss_dssp CSCTTTCCCCCTTT-SCEEECTTSCEEETTHHHHHHHHT--------CCCTTSCCSSC
T ss_pred CcCcccChhhcCCC-cCeEecCCCCcccHHHHHHHHHcC--------CcCCCCCCcCC
Confidence 67999999997765 457778999999999999999874 35999999873
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=8.5e-13 Score=97.64 Aligned_cols=50 Identities=24% Similarity=0.584 Sum_probs=36.6
Q ss_pred Cccccccccccc----------cccCCeEEec-CCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 025846 52 PKCCQCQAVLEE----------ESGSETTRLG-CLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (247)
Q Consensus 52 ~~C~ICle~L~~----------gD~~evvRL~-C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P 110 (247)
..|+||+++|.+ ++ +.++.|+ |+|+||.+||++||+... +||+||+++..
T Consensus 16 ~~C~IC~~~~~~~C~iC~~~~~~~-~~~~~~~~C~H~FH~~Ci~~Wl~~~~--------~CP~CR~~~~~ 76 (81)
T 2ecl_A 16 DTCAICRVQVMDACLRCQAENKQE-DCVVVWGECNHSFHNCCMSLWVKQNN--------RCPLCQQDWVV 76 (81)
T ss_dssp SCBTTTTBCTTSCCTTHHHHTCTT-TCCEEEETTSCEEEHHHHHHHTTTCC--------BCTTTCCBCCE
T ss_pred CCCcccChhhhccCcccccccCCC-ceEEEeCCCCCccChHHHHHHHHhCC--------CCCCcCCCcch
Confidence 356666666643 22 2566665 999999999999998642 59999998754
No 9
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.29 E-value=2.1e-12 Score=93.23 Aligned_cols=52 Identities=23% Similarity=0.577 Sum_probs=44.3
Q ss_pred CCccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCC
Q 025846 51 PPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPK 112 (247)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~~ 112 (247)
...|+||++.|...+ .++.|+|+|+||..||.+|++.. .+||+||+.|....
T Consensus 15 ~~~C~IC~~~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 15 GLECPVCKEDYALGE--SVRQLPCNHLFHDSCIVPWLEQH--------DSCPVCRKSLTGQN 66 (78)
T ss_dssp SCCCTTTTSCCCTTS--CEEECTTSCEEETTTTHHHHTTT--------CSCTTTCCCCCCSC
T ss_pred CCCCeeCCccccCCC--CEEEeCCCCeecHHHHHHHHHcC--------CcCcCcCCccCCcc
Confidence 368999999998875 67788999999999999999753 36999999988753
No 10
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=8.6e-12 Score=93.60 Aligned_cols=55 Identities=27% Similarity=0.499 Sum_probs=44.5
Q ss_pred CccccccccccccccCCeEEecCC-----CccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCCCC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCL-----HVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNVK 115 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~-----HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~~~i~ 115 (247)
..|.||++++++++ .+.++|. |.||.+||++||.... ..+||+||..+.....++
T Consensus 16 ~~C~IC~~~~~~~~---~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~------~~~CplCr~~~~~~~~~~ 75 (80)
T 2d8s_A 16 DICRICHCEGDDES---PLITPCHCTGSLHFVHQACLQQWIKSSD------TRCCELCKYEFIMETKLS 75 (80)
T ss_dssp CCCSSSCCCCCSSS---CEECSSSCCSSSCCEETTHHHHHHHHHC------CSBCSSSCCBCCCCCCSC
T ss_pred CCCeEcCccccCCC---eeEeccccCCcCCeeCHHHHHHHHhhCC------CCCCCCCCCeeecCcccC
Confidence 68999999998764 4568996 9999999999998752 246999999987765444
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=2.1e-11 Score=85.08 Aligned_cols=52 Identities=27% Similarity=0.489 Sum_probs=41.4
Q ss_pred CCccccccccccccc--cCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 025846 51 PPKCCQCQAVLEEES--GSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (247)
Q Consensus 51 ~~~C~ICle~L~~gD--~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P 110 (247)
...|+||++.|.+.. +..++.|+|+|+||..||.+|++.. .+||+||++|-+
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPTCRKKINH 68 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC--------SSCTTTCCCCCC
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC--------CCCCCCCCccCc
Confidence 367999999998641 0234778999999999999999873 259999998753
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.17 E-value=1.7e-11 Score=86.39 Aligned_cols=52 Identities=27% Similarity=0.496 Sum_probs=42.2
Q ss_pred Ccccccccccccc--ccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 52 PKCCQCQAVLEEE--SGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 52 ~~C~ICle~L~~g--D~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
..|+||++.|.+. +++.++.++|+|+||..||.+|++.. .+||+||+++.+.
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPTCRKKINHK 64 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC--------SBCTTTCCBCCCC
T ss_pred CCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC--------CCCCCCCCccChh
Confidence 6799999999763 11245778999999999999999864 3699999998754
No 13
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=4.8e-11 Score=87.05 Aligned_cols=55 Identities=29% Similarity=0.491 Sum_probs=45.2
Q ss_pred CCccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 51 PPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
...|+||++.|.+++ ...+.|+|+|+||..||..|++... ...+||+||+++..+
T Consensus 15 ~~~C~IC~~~~~~~~-~~~~~~~CgH~fC~~Ci~~~~~~~~-----~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 15 VLECPICMESFTEEQ-LRPKLLHCGHTICRQCLEKLLASSI-----NGVRCPFCSKITRIT 69 (88)
T ss_dssp CCBCTTTCCBCCTTS-SCEEECSSSCEEEHHHHHHHHHHCS-----SCBCCTTTCCCBCCS
T ss_pred CCCCccCCccccccC-CCeEECCCCChhhHHHHHHHHHcCC-----CCcCCCCCCCcccch
Confidence 478999999998865 3377889999999999999998742 246799999988654
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.14 E-value=3.2e-11 Score=82.98 Aligned_cols=52 Identities=27% Similarity=0.496 Sum_probs=41.8
Q ss_pred Ccccccccccccc--ccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 52 PKCCQCQAVLEEE--SGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 52 ~~C~ICle~L~~g--D~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
..|+||++.|.+. .++.++.++|+|+||.+||.+|++.. .+||+||+++...
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPTCRKKINHK 57 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC--------SBCTTTCCBCTTT
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC--------CCCCCCCccCCcc
Confidence 5799999999763 11245778999999999999999873 2599999998753
No 15
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.10 E-value=7.4e-11 Score=92.70 Aligned_cols=49 Identities=22% Similarity=0.467 Sum_probs=37.8
Q ss_pred Ccccccccccccc-------------ccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCc
Q 025846 52 PKCCQCQAVLEEE-------------SGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTI 108 (247)
Q Consensus 52 ~~C~ICle~L~~g-------------D~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I 108 (247)
..|+||++.|.+. ++..++.|+|+|+||..||+.||... .+||+||+++
T Consensus 38 d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--------~~CP~Cr~~~ 99 (106)
T 3dpl_R 38 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR--------QVCPLDNREW 99 (106)
T ss_dssp CCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC--------SBCSSSCSBC
T ss_pred CCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC--------CcCcCCCCcc
Confidence 5799999888743 20124557999999999999999863 2599999984
No 16
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=1.1e-10 Score=82.88 Aligned_cols=50 Identities=22% Similarity=0.510 Sum_probs=41.1
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
..|+||++.|.+ .+.|+|+|+||..||..|++... ....||+||+++...
T Consensus 21 ~~C~IC~~~~~~-----~~~~~CgH~fC~~Ci~~~~~~~~-----~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 21 VICPICLDILQK-----PVTIDCGHNFCLKCITQIGETSC-----GFFKCPLCKTSVRKN 70 (73)
T ss_dssp CBCTTTCSBCSS-----EEECTTCCEEEHHHHHHHCSSSC-----SCCCCSSSCCCCCCC
T ss_pred CEeccCCcccCC-----eEEcCCCChhhHHHHHHHHHcCC-----CCCCCCCCCCcCCcc
Confidence 789999999853 77789999999999999997421 245799999998754
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.09 E-value=4.9e-11 Score=83.75 Aligned_cols=47 Identities=26% Similarity=0.574 Sum_probs=39.9
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P 110 (247)
..|+||++.+.+ .++.++|+|+||..||.+|++.. .+||+||+++..
T Consensus 6 ~~C~IC~~~~~~----~~~~~~C~H~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~ 52 (68)
T 1chc_A 6 ERCPICLEDPSN----YSMALPCLHAFCYVCITRWIRQN--------PTCPLCKVPVES 52 (68)
T ss_dssp CCCSSCCSCCCS----CEEETTTTEEESTTHHHHHHHHS--------CSTTTTCCCCCC
T ss_pred CCCeeCCccccC----CcEecCCCCeeHHHHHHHHHhCc--------CcCcCCChhhHh
Confidence 579999999854 36788999999999999999864 359999998864
No 18
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=5.6e-11 Score=86.63 Aligned_cols=46 Identities=22% Similarity=0.573 Sum_probs=39.4
Q ss_pred CCccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 025846 51 PPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (247)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~ 109 (247)
...|+||++.|.+ .+.++|+|+||..||..|++.. ..||+||+++.
T Consensus 15 ~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~--------~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQN-----PVVTKCRHYFCESCALEHFRAT--------PRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCCS-----EEECTTSCEEEHHHHHHHHHHC--------SBCSSSCCBCC
T ss_pred CCCCcCCCchhcC-----eeEccCCCHhHHHHHHHHHHCC--------CcCCCcCcccc
Confidence 3679999999844 6679999999999999999863 36999999985
No 19
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.07 E-value=9.1e-11 Score=89.48 Aligned_cols=65 Identities=17% Similarity=0.337 Sum_probs=48.9
Q ss_pred CccccccccccccccCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCCCCCCcchHHHHHHHHhh
Q 025846 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNVKDSGSRLHSLLKEAIM 130 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~~~i~d~~S~l~~~Lre~i~ 130 (247)
..|+||++.|.+ .+. ++|+|+||..||..|+.... ..||+||+++.+..-+ ..++.+.|.+.+.
T Consensus 23 ~~C~IC~~~~~~-----p~~~~~CgH~FC~~Ci~~~~~~~~-------~~CP~Cr~~~~~~~l~---~~~~~~~i~~~~~ 87 (100)
T 3lrq_A 23 FRCFICMEKLRD-----ARLCPHCSKLCCFSCIRRWLTEQR-------AQCPHCRAPLQLRELV---NCRWAEEVTQQLD 87 (100)
T ss_dssp TBCTTTCSBCSS-----EEECTTTCCEEEHHHHHHHHHHTC-------SBCTTTCCBCCGGGCE---ECTTHHHHHHHHH
T ss_pred CCCccCCccccC-----ccccCCCCChhhHHHHHHHHHHCc-------CCCCCCCCcCCHHHhH---hhHHHHHHHHHHH
Confidence 579999999954 666 89999999999999998742 4699999999764322 2345555655554
Q ss_pred h
Q 025846 131 L 131 (247)
Q Consensus 131 q 131 (247)
+
T Consensus 88 ~ 88 (100)
T 3lrq_A 88 T 88 (100)
T ss_dssp H
T ss_pred H
Confidence 3
No 20
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.4e-10 Score=81.44 Aligned_cols=48 Identities=27% Similarity=0.513 Sum_probs=39.4
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
..|+||++.+.+ .+.++|+|+||..||.+|+... ..+||+||++|...
T Consensus 16 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 16 YKCEKCHLVLCS-----PKQTECGHRFCESCMAALLSSS-------SPKCTACQESIVKD 63 (66)
T ss_dssp EECTTTCCEESS-----CCCCSSSCCCCHHHHHHHHTTS-------SCCCTTTCCCCCTT
T ss_pred CCCCCCChHhcC-----eeECCCCCHHHHHHHHHHHHhC-------cCCCCCCCcCCChh
Confidence 679999999854 4458999999999999999632 34699999998753
No 21
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=5.4e-11 Score=84.89 Aligned_cols=46 Identities=26% Similarity=0.453 Sum_probs=39.5
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P 110 (247)
..|+||++.|.+ .+.|+|+|+||..||.+|+... .+||+||+.|..
T Consensus 16 ~~C~IC~~~~~~-----~~~~~CgH~fC~~Ci~~~~~~~--------~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 16 PECAICLQTCVH-----PVSLPCKHVFCYLCVKGASWLG--------KRCALCRQEIPE 61 (71)
T ss_dssp CBCSSSSSBCSS-----EEEETTTEEEEHHHHHHCTTCS--------SBCSSSCCBCCH
T ss_pred CCCccCCcccCC-----CEEccCCCHHHHHHHHHHHHCC--------CcCcCcCchhCH
Confidence 679999999843 7888999999999999999753 469999998864
No 22
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=2e-10 Score=82.09 Aligned_cols=48 Identities=29% Similarity=0.639 Sum_probs=40.3
Q ss_pred CCccccccccccccccCCeEEe-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 51 PPKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
...|+||++.|.+ .+.| +|+|+||..||..|++.. .+||+||+++...
T Consensus 15 ~~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~--------~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 15 YILCSICKGYLID-----ATTITECLHTFCKSCIVRHFYYS--------NRCPKCNIVVHQT 63 (72)
T ss_dssp GGSCTTTSSCCSS-----CEECSSSCCEECHHHHHHHHHHC--------SSCTTTCCCCCSS
T ss_pred CCCCCCCChHHHC-----cCEECCCCCHHHHHHHHHHHHcC--------CcCCCcCcccCcc
Confidence 3679999999854 5565 999999999999999763 3599999998764
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.05 E-value=2e-10 Score=82.83 Aligned_cols=52 Identities=15% Similarity=0.440 Sum_probs=42.2
Q ss_pred CCccccccccccccccCCeEEec-CCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCC
Q 025846 51 PPKCCQCQAVLEEESGSETTRLG-CLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKN 113 (247)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~-C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~~~ 113 (247)
...|+||++.|.+ .+.|+ |+|+||..||..|++... ...||+||+++..++.
T Consensus 15 ~~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~~------~~~CP~Cr~~~~~~~~ 67 (74)
T 2yur_A 15 ELLCLICKDIMTD-----AVVIPCCGNSYCDECIRTALLESD------EHTCPTCHQNDVSPDA 67 (74)
T ss_dssp GGSCSSSCCCCTT-----CEECSSSCCEECTTHHHHHHHHSS------SSCCSSSCCSSCCTTT
T ss_pred CCCCcCCChHHhC-----CeEcCCCCCHHHHHHHHHHHHhcC------CCcCCCCCCcCCCccc
Confidence 3689999999854 66798 999999999999998642 2469999998766543
No 24
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.03 E-value=4.3e-10 Score=83.32 Aligned_cols=52 Identities=15% Similarity=0.440 Sum_probs=41.8
Q ss_pred CCccccccccccccccCCeEEec-CCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCC
Q 025846 51 PPKCCQCQAVLEEESGSETTRLG-CLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKN 113 (247)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~-C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~~~ 113 (247)
...|+||++.|.+ .+.|+ |||+|+..||..|+.... .+.||+||+++.....
T Consensus 13 ~~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~~------~~~CP~Cr~~~~~~~~ 65 (92)
T 3ztg_A 13 ELLCLICKDIMTD-----AVVIPCCGNSYCDECIRTALLESD------EHTCPTCHQNDVSPDA 65 (92)
T ss_dssp TTEETTTTEECSS-----CEECTTTCCEECHHHHHHHHHHCT------TCCCTTTCCSSCCTTS
T ss_pred CCCCCCCChhhcC-----ceECCCCCCHHHHHHHHHHHHhcC------CCcCcCCCCcCCCccc
Confidence 3679999999853 77889 999999999999997542 3579999999854333
No 25
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.02 E-value=4.2e-10 Score=81.08 Aligned_cols=48 Identities=10% Similarity=0.194 Sum_probs=40.6
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
..|+||++.|.+ .+.++|||+|+..||..|++.. ..+||+|++++...
T Consensus 9 ~~C~IC~~~~~~-----Pv~~~CgH~fc~~Ci~~~~~~~-------~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 9 FRCPISLELMKD-----PVIVSTGQTYERSSIQKWLDAG-------HKTCPKSQETLLHA 56 (78)
T ss_dssp SSCTTTSCCCSS-----EEEETTTEEEEHHHHHHHHTTT-------CCBCTTTCCBCSSC
T ss_pred CCCCCccccccC-----CEEcCCCCeecHHHHHHHHHHC-------cCCCCCCcCCCChh
Confidence 579999999854 7778999999999999999742 34699999998764
No 26
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.02 E-value=3.9e-10 Score=88.31 Aligned_cols=51 Identities=20% Similarity=0.464 Sum_probs=42.2
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCCC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNV 114 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~~~i 114 (247)
..|+||++.|.+ .+.|+|||+||..||..|+... .+.||+||+++.+...+
T Consensus 53 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~Cr~~~~~~~~~ 103 (124)
T 3fl2_A 53 FQCICCQELVFR-----PITTVCQHNVCKDCLDRSFRAQ-------VFSCPACRYDLGRSYAM 103 (124)
T ss_dssp TBCTTTSSBCSS-----EEECTTSCEEEHHHHHHHHHTT-------CCBCTTTCCBCCTTCCC
T ss_pred CCCCcCChHHcC-----cEEeeCCCcccHHHHHHHHhHC-------cCCCCCCCccCCCCCCC
Confidence 569999999864 7778999999999999999842 35799999999874443
No 27
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=5.8e-11 Score=83.97 Aligned_cols=47 Identities=21% Similarity=0.557 Sum_probs=39.5
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPK 112 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~~ 112 (247)
..|+||++.+. + +.|+|+|+||..||.+|+... .+||+||++|....
T Consensus 16 ~~C~IC~~~~~-----~-~~~~CgH~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 16 EECCICMDGRA-----D-LILPCAHSFCQKCIDKWSDRH--------RNCPICRLQMTGAN 62 (70)
T ss_dssp CCCSSSCCSCC-----S-EEETTTEEECHHHHHHSSCCC--------SSCHHHHHCTTCCC
T ss_pred CCCeeCCcCcc-----C-cccCCCCcccHHHHHHHHHCc--------CcCCCcCCcccCCC
Confidence 78999999873 3 778999999999999999742 36999999987643
No 28
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.00 E-value=3.6e-10 Score=79.17 Aligned_cols=52 Identities=21% Similarity=0.357 Sum_probs=40.3
Q ss_pred Cccccccc-cccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 52 PKCCQCQA-VLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 52 ~~C~ICle-~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
..|+||++ .|.+.. ...+.++|||+||..||++|+... ...||+||+++...
T Consensus 4 ~~C~IC~~~~~~~~~-~~~~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 4 QGCPRCKTTKYRNPS-LKLMVNVCGHTLCESCVDLLFVRG-------AGNCPECGTPLRKS 56 (65)
T ss_dssp TCCSTTTTHHHHCSS-CCEEECTTCCCEEHHHHHHHHHTT-------SSSCTTTCCCCSSC
T ss_pred CcCCcCCCCccCCCc-cCeecCCCCCHhHHHHHHHHHHcC-------CCcCCCCCCccccc
Confidence 56999999 776643 122457999999999999998652 24699999998753
No 29
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.98 E-value=7.4e-10 Score=84.23 Aligned_cols=69 Identities=22% Similarity=0.388 Sum_probs=49.0
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCCCCC-CcchHHHHHHHHhh
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNVKD-SGSRLHSLLKEAIM 130 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~~~i~d-~~S~l~~~Lre~i~ 130 (247)
..|+||++.+.+ .+.++|||+||..||..|+.... ...+||+||.++....-..+ .-..+.+.+++.+.
T Consensus 22 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~-----~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~~~~ 91 (112)
T 1jm7_A 22 LECPICLELIKE-----PVSTKCDHIFCKFCMLKLLNQKK-----GPSQCPLCKNDITKRSLQESTRFSQLVEELLKIIC 91 (112)
T ss_dssp TSCSSSCCCCSS-----CCBCTTSCCCCSHHHHHHHHSSS-----SSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHHHH
T ss_pred CCCcccChhhcC-----eEECCCCCHHHHHHHHHHHHhCC-----CCCCCcCCCCcCCHhhcCccHHHHHHHHHHHHHHH
Confidence 569999999854 55689999999999999998642 23579999999887532211 22345555555443
No 30
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.97 E-value=8.6e-10 Score=79.27 Aligned_cols=54 Identities=20% Similarity=0.391 Sum_probs=42.7
Q ss_pred CCccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 51 PPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
...|+||++.|.+ .+.|+|+|+||..||..|+..... ......||+||+++...
T Consensus 19 ~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~--~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 19 EVTCPICLELLKE-----PVSADCNHSFCRACITLNYESNRN--TDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TTSCTTTCSCCSS-----CEECTTSCCBCHHHHHHHHHHSBC--TTSCBCCTTTCCCCCTT
T ss_pred CCCCcCCChhhCc-----ceeCCCCCHHHHHHHHHHHHhccC--CCCCCCCCCCCCcCCHH
Confidence 3679999999854 567899999999999999987421 11356799999998764
No 31
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.96 E-value=7.8e-11 Score=94.64 Aligned_cols=49 Identities=22% Similarity=0.487 Sum_probs=0.0
Q ss_pred Cccccccccccc-------------cccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCc
Q 025846 52 PKCCQCQAVLEE-------------ESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTI 108 (247)
Q Consensus 52 ~~C~ICle~L~~-------------gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I 108 (247)
.+|+||+++|.+ ++.-.++.++|+|+||..||++||+.. .+||+||++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~--------~~CP~Cr~~~ 110 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR--------QVCPLDNREW 110 (117)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC--------CcCCCCCCee
Confidence 589999999975 330122335899999999999999874 2599999984
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=7.5e-10 Score=76.92 Aligned_cols=44 Identities=23% Similarity=0.544 Sum_probs=35.9
Q ss_pred CCccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCC
Q 025846 51 PPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLC 104 (247)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~C 104 (247)
...|+||++.|.+ .+.|+|+|+||..||.+|++... ...+||+|
T Consensus 20 ~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~-----~~~~CP~C 63 (63)
T 2ysj_A 20 EVICPICLDILQK-----PVTIDCGHNFCLKCITQIGETSC-----GFFKCPLC 63 (63)
T ss_dssp CCBCTTTCSBCSS-----CEECTTSSEECHHHHHHHHHHCS-----SCCCCSCC
T ss_pred CCCCCcCCchhCC-----eEEeCCCCcchHHHHHHHHHcCC-----CCCcCcCC
Confidence 3789999999854 67789999999999999998521 23569998
No 33
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.95 E-value=3.5e-10 Score=90.59 Aligned_cols=46 Identities=26% Similarity=0.623 Sum_probs=39.2
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P 110 (247)
..|+||++.|.+ .+.|+|||+||..||..|+... .+||+||++|-.
T Consensus 54 ~~C~iC~~~~~~-----~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEYFIE-----AVTLNCAHSFCSYCINEWMKRK--------IECPICRKDIKS 99 (138)
T ss_dssp SBCTTTCSBCSS-----EEEETTSCEEEHHHHHHHTTTC--------SBCTTTCCBCCC
T ss_pred CCCcccCcccCC-----ceECCCCCCccHHHHHHHHHcC--------CcCCCCCCcCCC
Confidence 469999999843 7789999999999999999763 359999999854
No 34
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.94 E-value=5.5e-10 Score=86.06 Aligned_cols=52 Identities=27% Similarity=0.496 Sum_probs=42.2
Q ss_pred Ccccccccccccc--ccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 52 PKCCQCQAVLEEE--SGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 52 ~~C~ICle~L~~g--D~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
..|+||++.|.+. +++.++.|+|||+||+.||++|++.. .+||+||+.+...
T Consensus 8 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPTCRKKINHK 61 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC--------SBCTTTCCBCTTT
T ss_pred CCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC--------CCCCCCCCcCccc
Confidence 5699999999763 11356889999999999999999764 2699999988754
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=9.2e-10 Score=74.60 Aligned_cols=43 Identities=23% Similarity=0.694 Sum_probs=35.0
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLC 104 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~C 104 (247)
..|+||++.+.+ .+.|+|+|+||..||.+|+.... ...+||+|
T Consensus 16 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~-----~~~~CP~C 58 (58)
T 2ecj_A 16 ASCSVCLEYLKE-----PVIIECGHNFCKACITRWWEDLE-----RDFPCPVC 58 (58)
T ss_dssp CBCSSSCCBCSS-----CCCCSSCCCCCHHHHHHHTTSSC-----CSCCCSCC
T ss_pred CCCccCCcccCc-----cEeCCCCCccCHHHHHHHHHhcC-----CCCCCCCC
Confidence 689999999855 45689999999999999986532 23579998
No 36
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.91 E-value=1.3e-09 Score=82.14 Aligned_cols=47 Identities=21% Similarity=0.506 Sum_probs=39.6
Q ss_pred CccccccccccccccCCeEEe-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 52 PKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
..|+||++.|.+ .+.+ +|||+||..||..|+... .+||+||.++..+
T Consensus 23 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~--------~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 23 LRCGICFEYFNI-----AMIIPQCSHNYCSLCIRKFLSYK--------TQCPTCCVTVTEP 70 (99)
T ss_dssp TBCTTTCSBCSS-----EEECTTTCCEEEHHHHHHHHTTC--------CBCTTTCCBCCGG
T ss_pred CCcccCChhhCC-----cCEECCCCCHhhHHHHHHHHHCC--------CCCCCCCCcCChh
Confidence 579999999854 5666 899999999999999853 3699999998763
No 37
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=1.4e-09 Score=78.15 Aligned_cols=53 Identities=25% Similarity=0.515 Sum_probs=41.4
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
..|+||++.+.+ .+.|+|+|+||..||..|+..... ......||+||+.+...
T Consensus 20 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~--~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 20 VTCPICLELLTQ-----PLSLDCGHSFCQACLTANHKKSML--DKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCTTTCSCCSS-----CBCCSSSCCBCTTHHHHHHHHHHH--TTSCCCCTTTCCSSCSS
T ss_pred CCCCCCCcccCC-----ceeCCCCCHHHHHHHHHHHHHhhc--CCCCCcCCCCCCccCHH
Confidence 679999999854 566899999999999999976210 01245799999998864
No 38
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.89 E-value=6.3e-10 Score=79.76 Aligned_cols=54 Identities=22% Similarity=0.445 Sum_probs=42.1
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
..|+||++.|.+ .+.|+|+|+||..||..|++.... .......||+||.++..+
T Consensus 13 ~~C~IC~~~~~~-----p~~l~CgH~fC~~Ci~~~~~~~~~-~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 13 VTCPICLELLTE-----PLSLDCGHSLCRACITVSNKEAVT-SMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CEETTTTEECSS-----CCCCSSSCCCCHHHHSCCCCCCSS-SCCCCCCCSSSCCCCCSS
T ss_pred CCCcCCCcccCC-----eeECCCCCHHHHHHHHHHHHhccc-CCCCCCcCCCCCCcCCHh
Confidence 679999999854 556899999999999999976321 112356799999998763
No 39
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.88 E-value=1e-09 Score=84.50 Aligned_cols=52 Identities=27% Similarity=0.484 Sum_probs=41.7
Q ss_pred Cccccccccccccc--cCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 52 PKCCQCQAVLEEES--GSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 52 ~~C~ICle~L~~gD--~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
..|+||++.|.+.. +...+.++|+|+||..||++|++.. .+||+||++|.+.
T Consensus 73 ~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 73 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPTCRKKINHK 126 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC--------SBCTTTCCBCCGG
T ss_pred CCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC--------CCCCCCCCcCChh
Confidence 56999999997631 1245778999999999999999874 3599999998753
No 40
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.87 E-value=2.8e-09 Score=87.42 Aligned_cols=51 Identities=22% Similarity=0.514 Sum_probs=42.3
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCCC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNV 114 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~~~i 114 (247)
..|+||++.|.+ .+.|+|+|+|+..||..|+... .+.||+||.++.....+
T Consensus 79 ~~C~IC~~~~~~-----pv~~~CgH~fC~~Ci~~~~~~~-------~~~CP~Cr~~~~~~~~l 129 (150)
T 1z6u_A 79 FMCVCCQELVYQ-----PVTTECFHNVCKDCLQRSFKAQ-------VFSCPACRHDLGQNYIM 129 (150)
T ss_dssp TBCTTTSSBCSS-----EEECTTSCEEEHHHHHHHHHTT-------CCBCTTTCCBCCTTCCC
T ss_pred CEeecCChhhcC-----CEEcCCCCchhHHHHHHHHHhC-------CCcCCCCCccCCCCCCC
Confidence 579999999854 6669999999999999999852 35799999999876333
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.87 E-value=1.7e-09 Score=88.52 Aligned_cols=50 Identities=24% Similarity=0.600 Sum_probs=40.6
Q ss_pred CccccccccccccccCCeEEe-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCC
Q 025846 52 PKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKN 113 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~~~ 113 (247)
..|+||++.|.+ .+.+ +|+|+||..||..|+... ...||+||.++....+
T Consensus 55 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~Cr~~~~~~~~ 105 (165)
T 2ckl_B 55 LMCPICLDMLKN-----TMTTKECLHRFCADCIITALRSG-------NKECPTCRKKLVSKRS 105 (165)
T ss_dssp HBCTTTSSBCSS-----EEEETTTCCEEEHHHHHHHHHTT-------CCBCTTTCCBCCSGGG
T ss_pred CCCcccChHhhC-----cCEeCCCCChhHHHHHHHHHHhC-------cCCCCCCCCcCCCccc
Confidence 479999999864 5665 999999999999999852 2469999999865433
No 42
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.83 E-value=1.6e-09 Score=83.65 Aligned_cols=67 Identities=21% Similarity=0.503 Sum_probs=48.4
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC------CCCCCCCcchHHHHH
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP------PKNVKDSGSRLHSLL 125 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P------~~~i~d~~S~l~~~L 125 (247)
..|+||++.|.+ .+.|+|+|+|+..||..|+... ...||+||+.+.. ..+.. .+..+.+.+
T Consensus 16 ~~C~iC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~Cr~~~~~~~~~~~~~~~~-~n~~l~~~i 82 (115)
T 3l11_A 16 CQCGICMEILVE-----PVTLPCNHTLCKPCFQSTVEKA-------SLCCPFCRRRVSSWTRYHTRRNSL-VNVELWTII 82 (115)
T ss_dssp HBCTTTCSBCSS-----CEECTTSCEECHHHHCCCCCTT-------TSBCTTTCCBCHHHHHHHHHTTCC-BCHHHHHHH
T ss_pred CCCccCCcccCc-----eeEcCCCCHHhHHHHHHHHhHC-------cCCCCCCCcccCccccccccccch-hhHHHHHHH
Confidence 569999999853 7788999999999999999652 3579999999863 12211 234556666
Q ss_pred HHHhhh
Q 025846 126 KEAIML 131 (247)
Q Consensus 126 re~i~q 131 (247)
++.+..
T Consensus 83 ~~~~p~ 88 (115)
T 3l11_A 83 QKHYPR 88 (115)
T ss_dssp HHHSHH
T ss_pred HHHCCH
Confidence 665543
No 43
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.81 E-value=5.5e-09 Score=79.95 Aligned_cols=47 Identities=23% Similarity=0.676 Sum_probs=40.1
Q ss_pred CccccccccccccccCCeEEe-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 52 PKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
..|+||++.|.+ .+.+ +|||+||..||..|+... ..||+||..+...
T Consensus 16 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~--------~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 16 LMCVLCGGYFID-----ATTIIECLHSFCKTCIVRYLETS--------KYCPICDVQVHKT 63 (108)
T ss_dssp TBCTTTSSBCSS-----EEEETTTCCEEEHHHHHHHHTSC--------SBCTTTCCBSCSS
T ss_pred CCCccCChHHhC-----cCEeCCCCChhhHHHHHHHHHhC--------CcCcCCCcccccc
Confidence 679999999854 6676 999999999999999753 4699999998864
No 44
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.80 E-value=4.5e-09 Score=81.19 Aligned_cols=48 Identities=25% Similarity=0.715 Sum_probs=40.6
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
..|+||++.|.+ .+.++|||+||..||..|+... +.+||+||.++...
T Consensus 24 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 24 ISCQICEHILAD-----PVETSCKHLFCRICILRCLKVM-------GSYCPSCRYPCFPT 71 (116)
T ss_dssp TBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHHHHT-------CSBCTTTCCBCCGG
T ss_pred CCCCCCCcHhcC-----cEEcCCCCcccHHHHHHHHhHC-------cCcCCCCCCCCCHh
Confidence 579999999854 6669999999999999999863 24699999998764
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.75 E-value=4.3e-09 Score=82.02 Aligned_cols=48 Identities=21% Similarity=0.476 Sum_probs=40.7
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
..|+||++.|.+ .+.++|+|+|+..||..|+.... .+||+||.++...
T Consensus 19 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~-------~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 19 YECPICLMALRE-----AVQTPCGHRFCKACIIKSIRDAG-------HKCPVDNEILLEN 66 (118)
T ss_dssp GBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHHHHHC-------SBCTTTCCBCCGG
T ss_pred CCCCcCChhhcC-----eEECCcCChhhHHHHHHHHhhCC-------CCCCCCCCCcCHH
Confidence 679999999854 67789999999999999998642 3699999998764
No 46
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=4.4e-09 Score=78.48 Aligned_cols=47 Identities=21% Similarity=0.461 Sum_probs=37.9
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCc
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTI 108 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I 108 (247)
..|+||.+.|..++ .. ..|+|.||..||.+||+....+ +||+|+++.
T Consensus 16 ~~C~IC~~~i~~g~--~C--~~C~h~fH~~Ci~kWl~~~~~~------~CP~Cr~~w 62 (74)
T 2ct0_A 16 KICNICHSLLIQGQ--SC--ETCGIRMHLPCVAKYFQSNAEP------RCPHCNDYW 62 (74)
T ss_dssp CBCSSSCCBCSSSE--EC--SSSCCEECHHHHHHHSTTCSSC------CCTTTCSCC
T ss_pred CcCcchhhHcccCC--cc--CCCCchhhHHHHHHHHHhcCCC------CCCCCcCcC
Confidence 78999999998753 22 3999999999999999875322 599999864
No 47
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.68 E-value=1.7e-08 Score=75.07 Aligned_cols=51 Identities=22% Similarity=0.371 Sum_probs=40.5
Q ss_pred CCccccccccccccccCCeEEe--cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 51 PPKCCQCQAVLEEESGSETTRL--GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL--~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
+..|+||++++...| ...+ +|||.|+..||..+.+. ..+.||+||+++...
T Consensus 11 ~~~CpICle~~~~~d---~~~~p~~CGH~fC~~Cl~~~~~~-------~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 11 PVECPLCMEPLEIDD---INFFPCTCGYQICRFCWHRIRTD-------ENGLCPACRKPYPED 63 (78)
T ss_dssp CCBCTTTCCBCCTTT---TTCCSSTTSCCCCHHHHHHHTTS-------SCSBCTTTCCBCSSC
T ss_pred CCcCCccCccCcccc---ccccccCCCCCcCHHHHHHHHhc-------CCCCCCCCCCccCCC
Confidence 368999999996654 4444 59999999999999854 246799999998764
No 48
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.59 E-value=2.3e-08 Score=77.73 Aligned_cols=45 Identities=33% Similarity=0.867 Sum_probs=38.4
Q ss_pred CccccccccccccccCCeEEe-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 52 PKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
..|+||++.|.+ .+.| +|||+|+..||..|+. ..||+||.++...
T Consensus 23 ~~C~IC~~~~~~-----pv~~~~CgH~fC~~Ci~~~~~----------~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 23 LRCSRCTNILRE-----PVCLGGCEHIFCSNCVSDCIG----------TGCPVCYTPAWIQ 68 (117)
T ss_dssp TSCSSSCSCCSS-----CBCCCSSSCCBCTTTGGGGTT----------TBCSSSCCBCSCS
T ss_pred CCCCCCChHhhC-----ccEeCCCCCHHHHHHHHHHhc----------CCCcCCCCcCccc
Confidence 679999999844 6777 9999999999999997 2499999998653
No 49
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.53 E-value=4.6e-08 Score=83.67 Aligned_cols=70 Identities=9% Similarity=0.053 Sum_probs=53.5
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCCCCCCcchHHHHHHHHhhh
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNVKDSGSRLHSLLKEAIML 131 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~~~i~d~~S~l~~~Lre~i~q 131 (247)
-.|+||++.|.+ .|.++|||+|-+.||..|+... +.+||+|+.++-+. ++. .+-.|.+.+.+.+.+
T Consensus 209 ~~c~i~~~~~~d-----Pv~~~~gh~f~~~~i~~~~~~~-------~~~cP~~~~~~~~~-~l~-~n~~l~~~i~~~~~~ 274 (281)
T 2c2l_A 209 LCGKISFELMRE-----PCITPSGITYDRKDIEEHLQRV-------GHFNPVTRSPLTQE-QLI-PNLAMKEVIDAFISE 274 (281)
T ss_dssp TBCTTTCSBCSS-----EEECSSCCEEETTHHHHHHHHT-------CSSCTTTCCCCCGG-GCE-ECHHHHHHHHHHHTT
T ss_pred cCCcCcCCHhcC-----CeECCCCCEECHHHHHHHHHHC-------CCCCcCCCCCCchh-cCc-ccHHHHHHHHHHHHH
Confidence 579999999854 8889999999999999999863 23499999998653 222 234566666667777
Q ss_pred hhhh
Q 025846 132 TGLE 135 (247)
Q Consensus 132 ~~WA 135 (247)
.+|+
T Consensus 275 ~~~~ 278 (281)
T 2c2l_A 275 NGWV 278 (281)
T ss_dssp CSCS
T ss_pred CCCC
Confidence 7775
No 50
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.51 E-value=1.4e-08 Score=70.04 Aligned_cols=46 Identities=33% Similarity=0.681 Sum_probs=37.6
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKN 113 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~~~ 113 (247)
..|+||++.|.+ .+.|+|+|+|+..||..| ...||+||+.+..+.+
T Consensus 7 ~~C~IC~~~~~~-----p~~l~CgH~fC~~Ci~~~-----------~~~CP~Cr~~~~~~~~ 52 (56)
T 1bor_A 7 LRCQQCQAEAKC-----PKLLPCLHTLCSGCLEAS-----------GMQCPICQAPWPLGAD 52 (56)
T ss_dssp SSCSSSCSSCBC-----CSCSTTSCCSBTTTCSSS-----------SSSCSSCCSSSSCCSS
T ss_pred CCceEeCCccCC-----eEEcCCCCcccHHHHccC-----------CCCCCcCCcEeecCCc
Confidence 579999999854 677999999999999873 2359999999876543
No 51
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.50 E-value=1.2e-07 Score=73.08 Aligned_cols=70 Identities=9% Similarity=0.052 Sum_probs=53.4
Q ss_pred CccccccccccccccCCeEEecCC-CccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCCCCCCcchHHHHHHHHhh
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCL-HVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNVKDSGSRLHSLLKEAIM 130 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~-HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~~~i~d~~S~l~~~Lre~i~ 130 (247)
..|+||++.|.+ .|.++|| |+|-+.||..|+... .+||.|+.++-.. ++. .+-.|.+.+.++..
T Consensus 23 ~~CpI~~~~m~d-----PV~~~cG~htf~r~cI~~~l~~~--------~~cP~~~~~l~~~-~L~-pn~~Lk~~I~~~~~ 87 (98)
T 1wgm_A 23 FLDPIMSTLMCD-----PVVLPSSRVTVDRSTIARHLLSD--------QTDPFNRSPLTMD-QIR-PNTELKEKIQRWLA 87 (98)
T ss_dssp TBCTTTCSBCSS-----EEECTTTCCEEEHHHHHHHTTTS--------CBCTTTCSBCCTT-TSE-ECHHHHHHHHHHHH
T ss_pred cCCcCccccccC-----CeECCCCCeEECHHHHHHHHHhC--------CCCCCCCCCCChh-hce-EcHHHHHHHHHHHH
Confidence 679999999854 8899999 999999999999852 3699999998754 332 23455666666666
Q ss_pred hhhhhh
Q 025846 131 LTGLEK 136 (247)
Q Consensus 131 q~~WAr 136 (247)
+..|++
T Consensus 88 ~~~~~~ 93 (98)
T 1wgm_A 88 ERKQQS 93 (98)
T ss_dssp HSTTCS
T ss_pred Hcchhh
Confidence 666664
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.49 E-value=2.4e-08 Score=81.26 Aligned_cols=48 Identities=25% Similarity=0.369 Sum_probs=40.5
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
-.|+||++.|.+ .+.++|||+|+..||.+|++.. ..+||+||.+|...
T Consensus 32 ~~C~IC~~~~~~-----pv~~~CgH~FC~~Ci~~~~~~~-------~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 32 YLCSACRNVLRR-----PFQAQCGHRYCSFCLASILSSG-------PQNCAACVHEGIYE 79 (141)
T ss_dssp GBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHGGGS-------CEECHHHHHTTCCC
T ss_pred cCCCCCChhhcC-----cEECCCCCccCHHHHHHHHhcC-------CCCCCCCCCccccc
Confidence 679999999855 6778999999999999999753 24699999998654
No 53
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.42 E-value=1.4e-07 Score=89.31 Aligned_cols=48 Identities=31% Similarity=0.518 Sum_probs=40.1
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
..|+||++.+. +++.++|||+||..|+..|+... ..+||+||+++-..
T Consensus 333 ~~C~ICle~~~-----~pv~lpCGH~FC~~Ci~~wl~~~-------~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 333 QLCKICAENDK-----DVKIEPCGHLMCTSCLTSWQESE-------GQGCPFCRCEIKGT 380 (389)
T ss_dssp SBCTTTSSSBC-----CEEEETTCCEECHHHHHHHHHHT-------CSBCTTTCCBCCEE
T ss_pred CCCCccCcCCC-----CeEEeCCCChhhHHHHHHHHhcC-------CCCCCCCCCccCCc
Confidence 57999999873 47889999999999999999842 23599999998754
No 54
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.39 E-value=1.2e-07 Score=68.73 Aligned_cols=41 Identities=24% Similarity=0.465 Sum_probs=35.3
Q ss_pred CccccccccccccccCCeEEecCCCc-cCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHV-IHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~Hv-FH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~ 109 (247)
..|+||++.+.+ ++.|+|+|+ |...|+..| . .||+||++|-
T Consensus 25 ~~C~iC~~~~~~-----~~~~pCgH~~~C~~C~~~~--~----------~CP~Cr~~i~ 66 (74)
T 4ic3_A 25 KLCKICMDRNIA-----IVFVPCGHLVTCKQCAEAV--D----------KCPMCYTVIT 66 (74)
T ss_dssp TBCTTTSSSBCC-----EEEETTCCBCCCHHHHTTC--S----------BCTTTCCBCS
T ss_pred CCCCCCCCCCCC-----EEEcCCCChhHHHHhhhcC--c----------cCCCcCcCcc
Confidence 679999998743 788999999 999999998 1 4999999875
No 55
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.39 E-value=1.5e-07 Score=77.04 Aligned_cols=48 Identities=21% Similarity=0.476 Sum_probs=40.5
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
..|+||++.|.+ .+.++|||+|...||.+|+.... .+||+||.+|.+.
T Consensus 19 ~~C~IC~~~~~~-----pv~~~CgH~fC~~Ci~~~~~~~~-------~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 19 YECPICLMALRE-----AVQTPCGHRFCKACIIKSIRDAG-------HKCPVDNEILLEN 66 (170)
T ss_dssp GBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHHHHHC-------SBCTTTCCBCCGG
T ss_pred CCCCCCChhhcC-----cEECCCCCHHHHHHHHHHHHhCC-------CCCCCCccCcchh
Confidence 679999999854 66789999999999999997632 2699999998764
No 56
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.34 E-value=4e-07 Score=68.87 Aligned_cols=49 Identities=22% Similarity=0.375 Sum_probs=39.0
Q ss_pred CccccccccccccccCCeEEec-CCCccCHHHHHHHHhcCCCCCCCCCCCCCC--CCCC
Q 025846 52 PKCCQCQAVLEEESGSETTRLG-CLHVIHTSCLVSHIKSFPPHTAPAGYVCPL--CSTT 107 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~-C~HvFH~~CLd~WL~~~p~nTAPagy~CP~--Cr~~ 107 (247)
..|+||++.|.+ .|.++ |||+|-..||..|+..... ....++||+ |+..
T Consensus 8 ~~CPI~~~~~~d-----PV~~~~cGh~f~r~cI~~~l~~~~~--~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 8 FTCPITKEEMKK-----PVKNKVCGHTYEEDAIVRMIESRQK--RKKKAYCPQIGCSHT 59 (94)
T ss_dssp CBCTTTCSBCSS-----EEEESSSCCEEEHHHHHHHHHHHHT--TTCCBCCCSTTCCCC
T ss_pred eECcCcCchhcC-----CEEcCCCCCeecHHHHHHHHHHccC--cCCCCCCCcCcCccc
Confidence 679999999854 88895 9999999999999986311 013467999 9876
No 57
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.34 E-value=4.5e-07 Score=67.63 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=40.6
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
..|+||++.|.+ .|.++|||+|-..||..|+... .+||.|+.++-..
T Consensus 15 ~~CpI~~~~m~d-----PV~~~cGhtf~r~~I~~~l~~~--------~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 15 FRDPLMDTLMTD-----PVRLPSGTVMDRSIILRHLLNS--------PTDPFNRQMLTES 61 (85)
T ss_dssp TBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHHHHC--------SBCTTTCCBCCGG
T ss_pred eECcccCchhcC-----CeECCCCCEECHHHHHHHHhcC--------CCCCCCcCCCChH
Confidence 679999999854 8899999999999999999863 3699999987653
No 58
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.31 E-value=6.2e-07 Score=69.20 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=40.8
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
-.|+||++.|.+ .|.++|||+|-+.||..|+... .+||.|+.++-..
T Consensus 30 ~~CpI~~~~m~d-----PV~~~cGhtf~r~~I~~~l~~~--------~~cP~~~~~l~~~ 76 (100)
T 2kre_A 30 FRDPLMDTLMTD-----PVRLPSGTIMDRSIILRHLLNS--------PTDPFNRQTLTES 76 (100)
T ss_dssp TBCTTTCSBCSS-----EEEETTTEEEEHHHHHHHTTSC--------SBCSSSCCBCCTT
T ss_pred hCCcCccCcccC-----CeECCCCCEEchHHHHHHHHcC--------CCCCCCCCCCChh
Confidence 679999999854 8999999999999999999752 4699999998764
No 59
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.28 E-value=4.7e-07 Score=64.42 Aligned_cols=46 Identities=26% Similarity=0.560 Sum_probs=34.6
Q ss_pred CccccccccccccccCCeEEecCC--C---ccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCc
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCL--H---VIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTI 108 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~--H---vFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I 108 (247)
..|.||+++. ++ + ..+||. | .||.+||++|+..... .+||+|+..+
T Consensus 7 ~~CrIC~~~~--~~--~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~------~~C~~C~~~~ 57 (60)
T 1vyx_A 7 PVCWICNEEL--GN--E-RFRACGCTGELENVHRSCLSTWLTISRN------TACQICGVVY 57 (60)
T ss_dssp CEETTTTEEC--SC--C-CCCSCCCSSGGGSCCHHHHHHHHHHHTC------SBCTTTCCBC
T ss_pred CEeEEeecCC--CC--c-eecCcCCCCchhhhHHHHHHHHHHhCCC------CccCCCCCee
Confidence 6899999872 22 3 357865 4 9999999999976422 3699999875
No 60
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.23 E-value=2.1e-07 Score=87.82 Aligned_cols=57 Identities=19% Similarity=0.355 Sum_probs=40.6
Q ss_pred CccccccccccccccCCeE----EecCCCccCHHHHHHHHhcCCCCC-C--CCCCCCCCCCCCcc
Q 025846 52 PKCCQCQAVLEEESGSETT----RLGCLHVIHTSCLVSHIKSFPPHT-A--PAGYVCPLCSTTIW 109 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evv----RL~C~HvFH~~CLd~WL~~~p~nT-A--Pagy~CP~Cr~~I~ 109 (247)
..|+||++.+.+++ +... .+.|+|.||..||.+||++.+... + --.-.||.||++|-
T Consensus 309 ~ECaICys~~l~~g-~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 309 LRCNICFAYRLDGG-EVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCSSSCCSSCTTC-CCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCcccceeecCCC-CCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 78999999998743 2222 247999999999999998753210 0 01235999999886
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.22 E-value=9.9e-07 Score=75.39 Aligned_cols=70 Identities=9% Similarity=0.047 Sum_probs=53.6
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCCCCCCcchHHHHHHHHhhh
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNVKDSGSRLHSLLKEAIML 131 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~~~i~d~~S~l~~~Lre~i~q 131 (247)
..|+||++.|.+ .|.++|||+|=..||..|+... +.+||.|+.++-.. ++. .+-.|.+.+.+...+
T Consensus 107 f~CPI~~elm~D-----PV~~~~Ghtfer~~I~~~l~~~-------~~tcP~t~~~l~~~-~L~-pN~~Lk~~Ie~~~~~ 172 (179)
T 2f42_A 107 LCGKISFELMRE-----PCITPSGITYDRKDIEEHLQRV-------GHFDPVTRSPLTQD-QLI-PNLAMKEVIDAFIQE 172 (179)
T ss_dssp GBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHHHHT-------CSBCTTTCCBCCGG-GCE-ECHHHHHHHHHHHHH
T ss_pred hcccCccccCCC-----CeECCCCCEECHHHHHHHHHhC-------CCCCCCCcCCCChh-hCc-chHHHHHHHHHHHHH
Confidence 679999999854 8889999999999999999863 22599999988653 322 234566666667777
Q ss_pred hhhh
Q 025846 132 TGLE 135 (247)
Q Consensus 132 ~~WA 135 (247)
.+|+
T Consensus 173 ~~~~ 176 (179)
T 2f42_A 173 NGWV 176 (179)
T ss_dssp CTTC
T ss_pred CCCc
Confidence 7776
No 62
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.19 E-value=9.3e-07 Score=62.69 Aligned_cols=45 Identities=22% Similarity=0.387 Sum_probs=36.2
Q ss_pred CccccccccccccccCCeEEe--cCCCc-cCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 025846 52 PKCCQCQAVLEEESGSETTRL--GCLHV-IHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL--~C~Hv-FH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~ 109 (247)
..|.||++...+ ++.+ +|||+ |=.+|+..|.+.. ..||+||++|.
T Consensus 9 ~~C~IC~~~~~~-----~~~~~~pCgH~~~C~~C~~~~~~~~--------~~CPiCR~~i~ 56 (64)
T 2vje_A 9 EPCVICQGRPKN-----GCIVHGKTGHLMACFTCAKKLKKRN--------KPCPVCRQPIQ 56 (64)
T ss_dssp SCCTTTSSSCSC-----EEEEETTEEEEEECHHHHHHHHHTT--------CCCTTTCCCCC
T ss_pred CCCCcCCCCCCC-----EEEECCCCCChhhHHHHHHHHHHcC--------CcCCCcCcchh
Confidence 579999998754 4444 99999 6799999999753 25999999884
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=6.1e-07 Score=64.86 Aligned_cols=42 Identities=24% Similarity=0.398 Sum_probs=34.4
Q ss_pred CccccccccccccccCCeEEecCCCc-cCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHV-IHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~Hv-FH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P 110 (247)
..|+||++.+.+ ++.|+|+|+ |...|+... ..||+||++|..
T Consensus 26 ~~C~IC~~~~~~-----~~~~pCgH~~~C~~C~~~~------------~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNIA-----IVFVPCGHLVTCKQCAEAV------------DKCPMCYTVITF 68 (75)
T ss_dssp HSCSSSCSSCCC-----BCCSSSCCCCBCHHHHHHC------------SBCTTTCCBCCC
T ss_pred CCCCcCCCCCCC-----EEEecCCCHHHHHHHhhCC------------CCCccCCceecC
Confidence 579999998743 777999999 999999642 249999999864
No 64
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.14 E-value=1.1e-06 Score=62.22 Aligned_cols=47 Identities=19% Similarity=0.341 Sum_probs=36.8
Q ss_pred CccccccccccccccCCeEEecCCCc-cCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHV-IHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~Hv-FH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~ 109 (247)
..|.||++...+. .++-++|||+ |-++|+..|.+.. ..||+||++|.
T Consensus 8 ~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~--------~~CPiCR~~i~ 55 (63)
T 2vje_B 8 KPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAG--------ASCPICKKEIQ 55 (63)
T ss_dssp SBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTT--------CBCTTTCCBCC
T ss_pred CCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhC--------CcCCCcCchhh
Confidence 6799999986542 1333499998 9999999998653 35999999884
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.12 E-value=2e-07 Score=69.86 Aligned_cols=53 Identities=21% Similarity=0.441 Sum_probs=39.8
Q ss_pred CccccccccccccccCCeEEe-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCC--CCCC
Q 025846 52 PKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPL--CSTT 107 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~--Cr~~ 107 (247)
..|+||++++... +.++| +|+|.|..+||..|++..-........+||. |+..
T Consensus 6 ~~C~IC~~~~~~~---~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 6 SGCKLCLGEYPVE---QMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CCCSSSCCCCBGG---GEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred cCCcccCcccccc---cceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 5699999998765 47777 6999999999999987531111112468999 9987
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=5.8e-06 Score=59.50 Aligned_cols=42 Identities=26% Similarity=0.608 Sum_probs=34.7
Q ss_pred CccccccccccccccCCeEEecCCCc-cCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHV-IHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~Hv-FH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P 110 (247)
..|.||++... +++-|+|+|+ |-..|+.. . ..||+||++|..
T Consensus 16 ~~C~IC~~~~~-----~~v~~pCgH~~~C~~C~~~----~--------~~CP~CR~~i~~ 58 (68)
T 2ea5_A 16 KDCVVCQNGTV-----NWVLLPCRHTCLCDGCVKY----F--------QQCPMCRQFVQE 58 (68)
T ss_dssp SCCSSSSSSCC-----CCEETTTTBCCSCTTHHHH----C--------SSCTTTCCCCCC
T ss_pred CCCCCcCcCCC-----CEEEECCCChhhhHHHHhc----C--------CCCCCCCcchhc
Confidence 67999999753 3888999999 99999983 1 249999999875
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.76 E-value=7.8e-06 Score=60.30 Aligned_cols=42 Identities=24% Similarity=0.435 Sum_probs=35.1
Q ss_pred CccccccccccccccCCeEEecCCCc-cCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHV-IHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~Hv-FH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P 110 (247)
..|.||++.+. +++.|+|||+ |=..|+..|. .||+||.+|-.
T Consensus 19 ~~C~IC~~~~~-----~~v~~pCgH~~~C~~C~~~~~------------~CP~Cr~~i~~ 61 (79)
T 2yho_A 19 MLCMVCCEEEI-----NSTFCPCGHTVCCESCAAQLQ------------SCPVCRSRVEH 61 (79)
T ss_dssp TBCTTTSSSBC-----CEEEETTCBCCBCHHHHTTCS------------BCTTTCCBCCE
T ss_pred CEeEEeCcccC-----cEEEECCCCHHHHHHHHHhcC------------cCCCCCchhhC
Confidence 57999998863 3888999999 9999998762 49999998753
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.63 E-value=1.2e-05 Score=74.48 Aligned_cols=41 Identities=24% Similarity=0.523 Sum_probs=35.7
Q ss_pred CccccccccccccccCCeEEecCCCc-cCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHV-IHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~Hv-FH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~ 109 (247)
..|+||++.+.+ ++.|+|||+ |...|+..| . .||+||++|-
T Consensus 296 ~~C~IC~~~~~~-----~v~lpCgH~~fC~~C~~~~--~----------~CP~CR~~i~ 337 (345)
T 3t6p_A 296 RTCKVCMDKEVS-----VVFIPCGHLVVCQECAPSL--R----------KCPICRGIIK 337 (345)
T ss_dssp CBCTTTSSSBCC-----EEEETTCCEEECTTTGGGC--S----------BCTTTCCBCC
T ss_pred CCCCccCCcCCc-----eEEcCCCChhHhHHHHhcC--C----------cCCCCCCCcc
Confidence 679999999843 888999999 999999988 1 4999999885
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.40 E-value=5.7e-05 Score=68.53 Aligned_cols=49 Identities=18% Similarity=0.316 Sum_probs=40.3
Q ss_pred CCccccccccccccccCCeEEe-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCC--CCCCccC
Q 025846 51 PPKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPL--CSTTIWP 110 (247)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~--Cr~~I~P 110 (247)
.-.|+||++.|.+ .|+. .|||+|=..||..|++.. ...+||+ |++.+-.
T Consensus 181 el~CPIcl~~f~D-----PVts~~CGHsFcR~cI~~~~~~~------~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 181 ELTCPITCKPYEA-----PLISRKCNHVFDRDGIQNYLQGY------TTRDCPQAACSQVVSM 232 (267)
T ss_dssp CSBCTTTSSBCSS-----EEEESSSCCEEEHHHHHHHSTTC------SCEECSGGGCSCEECG
T ss_pred eeECcCccCcccC-----CeeeCCCCCcccHHHHHHHHHhC------CCCCCCcccccCcCch
Confidence 3789999999954 7775 999999999999999753 2357999 9997754
No 70
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.37 E-value=6.5e-05 Score=66.23 Aligned_cols=51 Identities=24% Similarity=0.553 Sum_probs=39.5
Q ss_pred CCccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCC
Q 025846 51 PPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPK 112 (247)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~~ 112 (247)
...|.+|.+-+..|- .. -.|+|.||..|+..|++... ..+||.|+.+ ||..
T Consensus 180 i~~C~iC~~iv~~g~--~C--~~C~~~~H~~C~~~~~~~~~------~~~CP~C~~~-W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQ--SC--ETCGIRMHLPCVAKYFQSNA------EPRCPHCNDY-WPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCE--EC--SSSCCEECHHHHHHHTTTCS------SCBCTTTCCB-CCSC
T ss_pred CCcCcchhhHHhCCc--cc--CccChHHHHHHHHHHHHhCC------CCCCCCCCCC-CCCC
Confidence 378999999987652 22 24999999999999998653 3469999997 8753
No 71
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.25 E-value=0.00013 Score=51.58 Aligned_cols=47 Identities=13% Similarity=0.064 Sum_probs=39.2
Q ss_pred CccccccccccccccCCeEEe-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 52 PKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
-.|+|+++.+.+ .+.+ .+||+|=++||.+||+... +||+.+.++-..
T Consensus 4 ~~CpIs~~~m~d-----PV~~~~sG~~yer~~I~~~l~~~~--------~cP~t~~~L~~~ 51 (61)
T 2bay_A 4 MLCAISGKVPRR-----PVLSPKSRTIFEKSLLEQYVKDTG--------NDPITNEPLSIE 51 (61)
T ss_dssp CCCTTTCSCCSS-----EEEETTTTEEEEHHHHHHHHHHHS--------BCTTTCCBCCGG
T ss_pred EEecCCCCCCCC-----CEEeCCCCcEEcHHHHHHHHHhCC--------CCcCCcCCCChh
Confidence 459999999964 7777 8999999999999998641 499999988643
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.69 E-value=0.0015 Score=51.72 Aligned_cols=46 Identities=28% Similarity=0.554 Sum_probs=36.4
Q ss_pred ccccccccccccccCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 025846 53 KCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (247)
Q Consensus 53 ~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P 110 (247)
-|.+|.-++.. -.| +||+|+|=.+|+..|.++. ...||.|+.+|.-
T Consensus 3 fC~~C~~Pi~i-----ygRmIPCkHvFCydCa~~~~~~~-------~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKV-----YGRMIPCKHVFCYDCAILHEKKG-------DKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSE-----EEEEETTCCEEEHHHHHHHHHTT-------CCBCTTTCCBCSE
T ss_pred ecCccCCCeEE-----EeeeccccccHHHHHHHHHHhcc-------CCCCcCcCCeeee
Confidence 48888888855 445 4999999999999998653 2359999998863
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.29 E-value=0.043 Score=39.59 Aligned_cols=50 Identities=26% Similarity=0.536 Sum_probs=37.3
Q ss_pred CccccccccccccccCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
..|.||.+ .+ +++. -.|...||..||+..|...|. ....||.|+....|.
T Consensus 13 ~~C~vC~~---~~---~ll~Cd~C~~~~H~~Cl~P~l~~~P~----g~W~C~~C~~~~~p~ 63 (66)
T 2lri_C 13 ARCGVCGD---GT---DVLRCTHCAAAFHWRCHFPAGTSRPG----TGLRCRSCSGDVTPA 63 (66)
T ss_dssp CCCTTTSC---CT---TCEECSSSCCEECHHHHCTTTCCCCS----SSCCCTTTTTCCCCC
T ss_pred CCcCCCCC---CC---eEEECCCCCCceecccCCCccCcCCC----CCEECccccCCCccC
Confidence 67999974 22 3333 379999999999999887654 357899998776654
No 74
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=88.42 E-value=0.26 Score=32.91 Aligned_cols=47 Identities=23% Similarity=0.588 Sum_probs=32.0
Q ss_pred ccccccccccccccCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 025846 53 KCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (247)
Q Consensus 53 ~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~ 106 (247)
.|.||...=..+ +.+. -.|.-.||..||+.=+...|. ....||.|..
T Consensus 2 ~C~vC~~~~~~~---~ll~Cd~C~~~~H~~Cl~p~l~~~P~----g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD---KLILCDECNKAFHLFCLRPALYEVPD----GEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS---CCEECTTTCCEECHHHHCTTCCSCCS----SCCSCTTTSC
T ss_pred CCCCCCCCCCCC---CEEECCCCChhhCcccCCCCcCCCCC----CcEECcCccc
Confidence 488888763222 2333 379999999999875655442 3578999965
No 75
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=85.47 E-value=0.35 Score=33.87 Aligned_cols=46 Identities=26% Similarity=0.552 Sum_probs=33.3
Q ss_pred CCccccccccccccccCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 025846 51 PPKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (247)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~ 106 (247)
+..|.+|... + +++. -.|.-.||..||+.-+...|. ....||.|.+
T Consensus 11 ~~~C~vC~~~---g---~ll~CD~C~~~fH~~Cl~p~l~~~p~----g~W~C~~C~~ 57 (61)
T 2l5u_A 11 QDYCEVCQQG---G---EIILCDTCPRAYHMVCLDPDMEKAPE----GKWSCPHCEK 57 (61)
T ss_dssp CSSCTTTSCC---S---SEEECSSSSCEEEHHHHCTTCCSCCC----SSCCCTTGGG
T ss_pred CCCCccCCCC---C---cEEECCCCChhhhhhccCCCCCCCCC----CceECccccc
Confidence 4779999863 2 3444 379999999999986655443 3578999965
No 76
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=80.76 E-value=0.38 Score=33.69 Aligned_cols=48 Identities=23% Similarity=0.510 Sum_probs=33.3
Q ss_pred CCccccccccccccccCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCc
Q 025846 51 PPKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTI 108 (247)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I 108 (247)
...|.||... + +++. -.|.-.||..||+.-|...|. ....||.|....
T Consensus 9 ~~~C~vC~~~---g---~ll~Cd~C~~~fH~~Cl~ppl~~~p~----g~W~C~~C~~~~ 57 (61)
T 1mm2_A 9 MEFCRVCKDG---G---ELLCCDTCPSSYHIHCLNPPLPEIPN----GEWLCPRCTCPA 57 (61)
T ss_dssp CSSCTTTCCC---S---SCBCCSSSCCCBCSSSSSSCCSSCCS----SCCCCTTTTTTC
T ss_pred CCcCCCCCCC---C---CEEEcCCCCHHHcccccCCCcCcCCC----CccCChhhcCch
Confidence 3679999852 2 2332 379999999999976655443 356799997643
No 77
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.03 E-value=0.17 Score=34.73 Aligned_cols=46 Identities=26% Similarity=0.629 Sum_probs=32.6
Q ss_pred CCccccccccccccccCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 025846 51 PPKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (247)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~ 106 (247)
+..|.+|... + +++. -.|.-.||..||+.-|...|. ....||.|..
T Consensus 9 ~~~C~vC~~~---g---~ll~Cd~C~~~~H~~Cl~ppl~~~p~----g~W~C~~C~~ 55 (56)
T 2yql_A 9 EDFCSVCRKS---G---QLLMCDTCSRVYHLDCLDPPLKTIPK----GMWICPRCQD 55 (56)
T ss_dssp CCSCSSSCCS---S---CCEECSSSSCEECSSSSSSCCCSCCC----SSCCCHHHHC
T ss_pred CCCCccCCCC---C---eEEEcCCCCcceECccCCCCcCCCCC----CceEChhhhC
Confidence 4779999874 3 2333 379999999999976655442 3567988853
No 78
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=78.91 E-value=1.3 Score=36.55 Aligned_cols=49 Identities=31% Similarity=0.659 Sum_probs=35.1
Q ss_pred CccccccccccccccCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 025846 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P 110 (247)
..|.+|... | +.+- =.|.-.||..||+.-+...|. ....||.|+..--|
T Consensus 5 ~~C~~C~~~---g---~ll~Cd~C~~~~H~~C~~p~l~~~p~----~~W~C~~C~~~~~~ 54 (184)
T 3o36_A 5 DWCAVCQNG---G---ELLCCEKCPKVFHLSCHVPTLTNFPS----GEWICTFCRDLSKP 54 (184)
T ss_dssp SSCTTTCCC---S---SCEECSSSSCEECTTTSSSCCSSCCS----SCCCCTTTSCSSSC
T ss_pred CccccCCCC---C---eeeecCCCCcccCccccCCCCCCCCC----CCEECccccCcccc
Confidence 569999843 3 3322 269999999999887765543 35789999986654
No 79
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=78.58 E-value=0.2 Score=38.52 Aligned_cols=34 Identities=24% Similarity=0.581 Sum_probs=24.5
Q ss_pred cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 025846 73 GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (247)
Q Consensus 73 ~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~ 106 (247)
.|...||..|+....+.......+.+|.||.|+.
T Consensus 80 ~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 80 ICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp TTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred ecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 7999999999976543333334567899999963
No 80
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=75.42 E-value=1.8 Score=32.93 Aligned_cols=60 Identities=22% Similarity=0.434 Sum_probs=35.8
Q ss_pred ecccccccCCCCCC-CccccccccccccccCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 025846 38 TYSEWVIDGEYDWP-PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (247)
Q Consensus 38 sYlqWL~Dsdyd~~-~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~ 106 (247)
.|.+=-.|.++..+ ..| ||.....++ ..+. =.|.--||..|+.. +....|..|.||.|+.
T Consensus 14 ~~~~~~edg~~~~d~vrC-iC~~~~~~~---~mi~Cd~C~~w~H~~C~~~-----~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 14 LYFQGSEDGSYGTDVTRC-ICGFTHDDG---YMICCDKCSVWQHIDCMGI-----DRQHIPDTYLCERCQP 75 (98)
T ss_dssp -----CTTCCCCCCBCCC-TTSCCSCSS---CEEEBTTTCBEEETTTTTC-----CTTSCCSSBCCTTTSS
T ss_pred ccccCCccCCCCCCCEEe-ECCCccCCC---cEEEcCCCCCcCcCcCCCC-----CccCCCCCEECCCCcC
Confidence 34454455555433 456 898775443 2333 27999999999964 2234567899999963
No 81
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=74.47 E-value=0.62 Score=39.36 Aligned_cols=49 Identities=29% Similarity=0.634 Sum_probs=34.7
Q ss_pred CccccccccccccccCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 025846 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P 110 (247)
..|.+|... | +++- =.|...||..||+.-+...|. ....||.|+..--+
T Consensus 8 ~~C~~C~~~---g---~ll~Cd~C~~~~H~~Cl~p~l~~~p~----~~W~C~~C~~~~~~ 57 (207)
T 3u5n_A 8 DWCAVCQNG---G---DLLCCEKCPKVFHLTCHVPTLLSFPS----GDWICTFCRDIGKP 57 (207)
T ss_dssp SSBTTTCCC---E---EEEECSSSSCEECTTTSSSCCSSCCS----SCCCCTTTSCSSSC
T ss_pred CCCCCCCCC---C---ceEEcCCCCCccCCccCCCCCCCCCC----CCEEeCceeCcccc
Confidence 679999743 2 2222 169999999999987766543 35789999876543
No 82
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=73.95 E-value=0.52 Score=36.06 Aligned_cols=80 Identities=28% Similarity=0.531 Sum_probs=45.0
Q ss_pred ccCcccccCCCCceeeeecccccccCCCCCC-C---ccccccccccccccCCeEE-ecCCCccCHHHHHHHHhcCCCCCC
Q 025846 21 VCGECICFPEHQICVVRTYSEWVIDGEYDWP-P---KCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTA 95 (247)
Q Consensus 21 VCe~Ci~~~~H~~CvVqsYlqWL~Dsdyd~~-~---~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTA 95 (247)
.|..|-. .=|..|+.-... -+.+ ..|. + .|.+|...-.+. .++. -.|...||..||+.-|...|.
T Consensus 24 ~C~~C~~-~~H~~Cl~~~~~-~~~~--~~W~C~~C~~C~~C~~~~~~~---~ll~Cd~C~~~yH~~Cl~ppl~~~P~--- 93 (111)
T 2ysm_A 24 FCTTCGQ-HYHGMCLDIAVT-PLKR--AGWQCPECKVCQNCKQSGEDS---KMLVCDTCDKGYHTFCLQPVMKSVPT--- 93 (111)
T ss_dssp ECSSSCC-EECTTTTTCCCC-TTTS--TTCCCTTTCCCTTTCCCSCCT---TEEECSSSCCEEEGGGSSSCCSSCCS---
T ss_pred ECCCCCC-CcChHHhCCccc-cccc--cCccCCcCCcccccCccCCCC---CeeECCCCCcHHhHHhcCCccccCCC---
Confidence 4555652 457777753321 1212 2221 2 466666552221 2222 269999999999876665543
Q ss_pred CCCCCCCCCCCCccCC
Q 025846 96 PAGYVCPLCSTTIWPP 111 (247)
Q Consensus 96 Pagy~CP~Cr~~I~P~ 111 (247)
....||.|....-.+
T Consensus 94 -g~W~C~~C~~c~~g~ 108 (111)
T 2ysm_A 94 -NGWKCKNCRICISGP 108 (111)
T ss_dssp -SCCCCHHHHCCSCSC
T ss_pred -CCcCCcCCcCcCCCC
Confidence 367899997654433
No 83
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=73.25 E-value=0.89 Score=31.54 Aligned_cols=50 Identities=20% Similarity=0.336 Sum_probs=34.0
Q ss_pred CccccccccccccccCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 025846 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~ 106 (247)
..|++|..+..++. ..+. -.|..=||..|+.--.... ..+..|.||.|+.
T Consensus 7 ~~C~~C~~~~~~~~--~mI~Cd~C~~WfH~~Cvgl~~~~~---~~~~~~~C~~C~~ 57 (64)
T 1we9_A 7 GQCGACGESYAADE--FWICCDLCEMWFHGKCVKITPARA---EHIKQYKCPSCSN 57 (64)
T ss_dssp CCCSSSCCCCCSSS--CEEECSSSCCEEETTTTTCCTTGG---GGCSSCCCHHHHT
T ss_pred CCCCCCCCccCCCC--CEEEccCCCCCCCccccCcChhHh---cCCCcEECCCCcC
Confidence 67999999875432 3444 3799999999985432211 0136799999965
No 84
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=72.90 E-value=1.2 Score=34.08 Aligned_cols=49 Identities=22% Similarity=0.491 Sum_probs=32.5
Q ss_pred CCccccccccccccccCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 025846 51 PPKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (247)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~ 106 (247)
+..|.||.+.=+.. +.+. -.|...||..||+..+...+ .....||.|+.
T Consensus 7 ~~~C~~C~~~g~~~---~ll~C~~C~~~~H~~Cl~~~~~~~~----~~~W~C~~C~~ 56 (111)
T 2ysm_A 7 GANCAVCDSPGDLL---DQFFCTTCGQHYHGMCLDIAVTPLK----RAGWQCPECKV 56 (111)
T ss_dssp CSCBTTTCCCCCTT---TSEECSSSCCEECTTTTTCCCCTTT----STTCCCTTTCC
T ss_pred CCCCcCCCCCCCCc---CCeECCCCCCCcChHHhCCcccccc----ccCccCCcCCc
Confidence 36899998763211 2233 37999999999998764322 24677887753
No 85
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=72.48 E-value=3.1 Score=32.13 Aligned_cols=49 Identities=29% Similarity=0.557 Sum_probs=31.5
Q ss_pred CCccccccccccccccCCeEE-ecCCCccCHHHHHHH--HhcC-------CCCCCCCCCCCCCC
Q 025846 51 PPKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSH--IKSF-------PPHTAPAGYVCPLC 104 (247)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~W--L~~~-------p~nTAPagy~CP~C 104 (247)
+..|.||..- ..+ +... -.|+-+||..||.+. ++.. .++| -.|..||-|
T Consensus 15 D~~C~VC~~~-t~~---~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T-~~GWSC~~C 73 (89)
T 1wil_A 15 DEMCDVCEVW-TAE---SLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHT-ETGWSCHYC 73 (89)
T ss_dssp SCCCTTTCCC-CSS---CCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSS-SSSCCCTTT
T ss_pred CcccCccccc-ccc---ceeccccccccccHhhcccccccccHHHHHHHHccCC-CCCcccccc
Confidence 3789999743 222 2222 369999999999997 1111 1222 258999999
No 86
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=70.34 E-value=1.8 Score=30.81 Aligned_cols=51 Identities=20% Similarity=0.323 Sum_probs=33.6
Q ss_pred CCccccccccccccccCCeEEe-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCc
Q 025846 51 PPKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTI 108 (247)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I 108 (247)
...|.+|...-. ++ ..+.= .|.--||..|+.--+...+ ...+.||.|...+
T Consensus 18 ~~~C~~C~~~~~-~~--~mi~CD~C~~wfH~~Cv~~~~~~~~----~~~w~C~~C~~~~ 69 (75)
T 2k16_A 18 IWICPGCNKPDD-GS--PMIGCDDCDDWYHWPCVGIMAAPPE----EMQWFCPKCANKI 69 (75)
T ss_dssp EECBTTTTBCCS-SC--CEEECSSSSSEEEHHHHTCSSCCCS----SSCCCCTTTHHHH
T ss_pred CcCCCCCCCCCC-CC--CEEEcCCCCcccccccCCCCccCCC----CCCEEChhccCch
Confidence 356999988742 21 23332 7999999999975443221 2478999997654
No 87
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=70.29 E-value=1.2 Score=33.97 Aligned_cols=46 Identities=22% Similarity=0.563 Sum_probs=33.3
Q ss_pred CccccccccccccccCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 025846 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTT 107 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~ 107 (247)
..|.+|... | +++. -.|--.||..||+.=|...|. ....||.|...
T Consensus 26 ~~C~vC~~~---g---~LL~CD~C~~~fH~~Cl~PpL~~~P~----g~W~C~~C~~~ 72 (88)
T 1fp0_A 26 TICRVCQKP---G---DLVMCNQCEFCFHLDCHLPALQDVPG----EEWSCSLCHVL 72 (88)
T ss_dssp SCCSSSCSS---S---CCEECTTSSCEECTTSSSTTCCCCCS----SSCCCCSCCCC
T ss_pred CcCcCcCCC---C---CEEECCCCCCceecccCCCCCCCCcC----CCcCCccccCC
Confidence 569999864 3 2333 379999999999887765543 35679999754
No 88
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=68.77 E-value=1.2 Score=34.41 Aligned_cols=48 Identities=17% Similarity=0.503 Sum_probs=31.0
Q ss_pred ccccccccccccccCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 025846 53 KCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (247)
Q Consensus 53 ~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~ 106 (247)
.|.+|...=.+.+ ..+. -.|...||..||+.-|...|. ....||.|+.
T Consensus 63 ~C~vC~~~~~~~~--~ll~Cd~C~~~yH~~Cl~p~l~~~P~----~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNAD--NMLFCDSCDRGFHMECCDPPLTRMPK----GMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTC--CCEECTTTCCEECGGGCSSCCSSCCS----SCCCCTTTSC
T ss_pred ccccccCcCCCcc--ceEEcCCCCCeeecccCCCCCCCCCC----CCeECCCCCC
Confidence 4677765422211 2222 269999999999877766543 3578999974
No 89
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=68.10 E-value=3.8 Score=33.65 Aligned_cols=45 Identities=13% Similarity=0.391 Sum_probs=31.5
Q ss_pred CccccccccccccccCCeEEe-cCCCccCHHHHHHHHhc-------CCCCCCCCCCCCCCCCC
Q 025846 52 PKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKS-------FPPHTAPAGYVCPLCST 106 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~WL~~-------~p~nTAPagy~CP~Cr~ 106 (247)
..|.+|.+. | +.+-- .|--+||..||+.=|.. .+ .....||.|..
T Consensus 64 d~C~vC~~G---G---~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p----~~~W~C~~C~~ 116 (142)
T 2lbm_A 64 EQCRWCAEG---G---NLICCDFCHNAFCKKCILRNLGRKELSTIMDE----NNQWYCYICHP 116 (142)
T ss_dssp CSCSSSCCC---S---SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTS----TTCCCCTTTCC
T ss_pred CeecccCCC---C---cEEeCCCCCCeeeHhhcCCCCChhhhhhcccC----CCCCEeecccC
Confidence 789999863 2 33332 79999999999976631 12 13568999964
No 90
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=65.89 E-value=3.8 Score=31.27 Aligned_cols=47 Identities=26% Similarity=0.552 Sum_probs=30.8
Q ss_pred CccccccccccccccCCeEEe-c--CC-CccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 025846 52 PKCCQCQAVLEEESGSETTRL-G--CL-HVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~--C~-HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~ 109 (247)
..| ||.... .+ +.+.= . |. .-||..|+. |...+. ..|.||.|+...-
T Consensus 37 ~yC-iC~~~~-~g---~MI~CD~~dC~~~WfH~~CVg--l~~~p~----g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 37 TYC-LCHQVS-YG---EMIGCDNPDCSIEWFHFACVG--LTTKPR----GKWFCPRCSQESG 87 (91)
T ss_dssp BCS-TTCCBC-CS---CCCCCSCSSCSCCCCCSTTTT--CSSCCC----SSCCCTTTCCCCS
T ss_pred cEE-ECCCCC-CC---CEeEecCCCCCCCCEecccCC--cCcCCC----CCEECcCccCcCC
Confidence 567 998874 23 23321 4 66 689999998 544332 4689999976443
No 91
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=64.95 E-value=1.7 Score=31.30 Aligned_cols=48 Identities=23% Similarity=0.575 Sum_probs=30.5
Q ss_pred ccccccccccccccCCeEEe-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 025846 53 KCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (247)
Q Consensus 53 ~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~ 106 (247)
.|.||...=..+ +++.= .|...||..||+.=|...|.. ....||.|..
T Consensus 20 ~C~~C~~~~~~~---~ll~CD~C~~~yH~~Cl~Ppl~~~P~g---~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPD---KQLMCDECDMAFHIYCLDPPLSSVPSE---DEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGG---GEEECTTTCCEEEGGGSSSCCSSCCSS---SCCCCTTTSC
T ss_pred CCcCCCCcCCCC---CEEEcCCCCCceecccCCCCcCCCCCC---CCcCCcCccC
Confidence 466777542222 23322 699999999998766554421 1467999965
No 92
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=64.30 E-value=2.4 Score=30.77 Aligned_cols=56 Identities=23% Similarity=0.533 Sum_probs=35.7
Q ss_pred CCCccccccccccccccCCeEE-e--cCCCccCHHHHHHHHhcCCCC---CCCCCCCCCCCCCCccCC
Q 025846 50 WPPKCCQCQAVLEEESGSETTR-L--GCLHVIHTSCLVSHIKSFPPH---TAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 50 ~~~~C~ICle~L~~gD~~evvR-L--~C~HvFH~~CLd~WL~~~p~n---TAPagy~CP~Cr~~I~P~ 111 (247)
+...| ||......+ ..+. = .|..=||..|+.-- ..+.. ..+..|.||.|+..-.++
T Consensus 15 ~~~~C-iC~~~~~~g---~MI~CD~~~C~~W~H~~CVgi~--~~~~~~~~~~~~~~~C~~C~~~~~~~ 76 (78)
T 1wew_A 15 IKVRC-VCGNSLETD---SMIQCEDPRCHVWQHVGCVILP--DKPMDGNPPLPESFYCEICRLTSGPS 76 (78)
T ss_dssp CCCCC-SSCCCCCCS---CEEECSSTTTCCEEEHHHHSCC--CTTTCSCSCSCSSCCCHHHHHCCSCC
T ss_pred CCEEe-ECCCcCCCC---CEEEECCccCCccccCEEEccc--cccccccccCCCCEECCCCCcccCCC
Confidence 34678 899884433 3444 3 69999999999531 11110 235689999997755543
No 93
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=64.27 E-value=0.8 Score=31.67 Aligned_cols=47 Identities=26% Similarity=0.637 Sum_probs=33.0
Q ss_pred CccccccccccccccCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCc
Q 025846 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTI 108 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I 108 (247)
..|.+|... + +.+. -.|.-.||..||+.-+...|. ....||.|....
T Consensus 6 ~~C~vC~~~---g---~ll~Cd~C~~~fH~~Cl~ppl~~~p~----g~W~C~~C~~~~ 53 (60)
T 2puy_A 6 DFCSVCRKS---G---QLLMCDTCSRVYHLDCLDPPLKTIPK----GMWICPRCQDQM 53 (60)
T ss_dssp SSCTTTCCC---S---SCEECSSSSCEECGGGSSSCCSSCCC----SCCCCHHHHHHH
T ss_pred CCCcCCCCC---C---cEEEcCCCCcCEECCcCCCCcCCCCC----CceEChhccChh
Confidence 679999873 3 2333 379999999999976655442 356799995443
No 94
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.19 E-value=1.8 Score=31.80 Aligned_cols=49 Identities=24% Similarity=0.487 Sum_probs=31.9
Q ss_pred CccccccccccccccCCeEEe-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 025846 52 PKCCQCQAVLEEESGSETTRL-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~ 106 (247)
-.|.||...=..+ +++.= .|...||..||+.=|...|.. ....||.|..
T Consensus 27 c~C~vC~~~~~~~---~ll~CD~C~~~yH~~Cl~Ppl~~~P~g---~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPN---MQLLCDECNVAYHIYCLNPPLDKVPEE---EYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCST---TEEECSSSCCEEETTSSSSCCSSCCCS---SCCCCTTTCC
T ss_pred CCCcCcCCcCCCC---CEEEcCCCCccccccccCCCccCCCCC---CCcCCcCccC
Confidence 3588898652222 23332 799999999998766554421 1367999964
No 95
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=64.01 E-value=2.4 Score=29.55 Aligned_cols=39 Identities=28% Similarity=0.543 Sum_probs=22.2
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P 110 (247)
+.|+.|.+.+..++ .+..+ +..||.+| |+|-.|+++|..
T Consensus 1 p~C~~C~~~I~~~~--~v~a~--~~~~H~~C----------------F~C~~C~~~L~~ 39 (76)
T 1iml_A 1 PKCPKCDKEVYFAE--RVTSL--GKDWHRPC----------------LKCEKCGKTLTS 39 (76)
T ss_dssp CBCTTTSSBCCGGG--EEEET--TEEEETTT----------------CBCTTTCCBCCT
T ss_pred CcCCCCCCEEECce--EEEEC--CccccCCC----------------CCccccCccCCC
Confidence 35777777766543 22223 56666655 247777766654
No 96
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=63.66 E-value=3.7 Score=25.76 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=22.3
Q ss_pred cccccceeeeeccCccCcccccCCCCc
Q 025846 7 RKATKLYCFVHKVPVCGECICFPEHQI 33 (247)
Q Consensus 7 rk~T~~fCf~HrvnVCe~Ci~~~~H~~ 33 (247)
++.-++||-+.+..||..|....+|..
T Consensus 10 ~e~l~lfC~~d~~~iC~~C~~~~~H~~ 36 (42)
T 1fre_A 10 DERLKLYCKDDGTLSCVICRDSLKHAS 36 (42)
T ss_dssp CSSCCCCCCSSSSSSCCTTSSCSSCTT
T ss_pred CCeeeEEeCCCCeEEeccCCCCCCCCC
Confidence 567789999999999999986567743
No 97
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=62.85 E-value=1.2 Score=37.85 Aligned_cols=54 Identities=19% Similarity=0.480 Sum_probs=34.7
Q ss_pred Ccccccccccccccc-CCeEEe-cCCCccCHHHHHH------HHhcCCCCCCCCCCCCCCCCCCc
Q 025846 52 PKCCQCQAVLEEESG-SETTRL-GCLHVIHTSCLVS------HIKSFPPHTAPAGYVCPLCSTTI 108 (247)
Q Consensus 52 ~~C~ICle~L~~gD~-~evvRL-~C~HvFH~~CLd~------WL~~~p~nTAPagy~CP~Cr~~I 108 (247)
..|+||...+.+++. ...+.= .|..-||..|+.- -+...|. ...|.||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe---~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPE---SVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHH---HHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCC---CCeeECcCCCCCC
Confidence 569999999987641 113332 6999999999842 1111110 0268999998754
No 98
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=62.83 E-value=2.9 Score=28.96 Aligned_cols=50 Identities=26% Similarity=0.484 Sum_probs=32.2
Q ss_pred CccccccccccccccCCeEE-ecCCCccCHHHHHHHHhc--C-CCCCCCCCCCCCCCCC
Q 025846 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKS--F-PPHTAPAGYVCPLCST 106 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~--~-p~nTAPagy~CP~Cr~ 106 (247)
..|.||.....+.+ ..++. -.|.-.||..|++.-+.. . +. ....||.|..
T Consensus 7 ~~C~vC~~~~~~~~-~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~----~~W~C~~C~~ 60 (66)
T 2yt5_A 7 GVCTICQEEYSEAP-NEMVICDKCGQGYHQLCHTPHIDSSVIDSD----EKWLCRQCVF 60 (66)
T ss_dssp CCBSSSCCCCCBTT-BCEEECSSSCCEEETTTSSSCCCHHHHHSS----CCCCCHHHHH
T ss_pred CCCCCCCCCCCCCC-CCEEECCCCChHHHhhhCCCcccccccCCC----CCEECCCCcC
Confidence 68999998754322 12333 279999999999864432 1 21 3567998854
No 99
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=62.41 E-value=7.1 Score=29.96 Aligned_cols=50 Identities=26% Similarity=0.440 Sum_probs=29.0
Q ss_pred Ccccccccccc---ccccCCeEE-ecCCCccCHHHHHH---HHhcCCCCCCCCCCCCCCCC
Q 025846 52 PKCCQCQAVLE---EESGSETTR-LGCLHVIHTSCLVS---HIKSFPPHTAPAGYVCPLCS 105 (247)
Q Consensus 52 ~~C~ICle~L~---~gD~~evvR-L~C~HvFH~~CLd~---WL~~~p~nTAPagy~CP~Cr 105 (247)
..|.+|+..=. .+++++.+. -.|+..||..||+. .....+ .....||.|+
T Consensus 6 ~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~----~~~W~C~~C~ 62 (112)
T 3v43_A 6 PICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVK----ALRWQCIECK 62 (112)
T ss_dssp SSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHH----TSCCCCTTTC
T ss_pred ccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhh----ccccccccCC
Confidence 67888876521 122123333 47999999999963 221111 1356688885
No 100
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.32 E-value=8 Score=27.02 Aligned_cols=41 Identities=24% Similarity=0.485 Sum_probs=28.7
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
+.|+.|.+.+..++ .+++ .=+.+||.+|+ +|-.|+++|...
T Consensus 16 ~~C~~C~~~I~~~~--~~~~-a~~~~~H~~CF----------------~C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGD--QNVE-YKGTVWHKDCF----------------TCSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSS--CEEE-CSSCEEETTTC----------------CCSSSCCCCTTS
T ss_pred CcCccCCcccccCc--eEEE-ECccccccccC----------------chhhCCCccCCC
Confidence 78999999987654 3333 23668887663 488998887653
No 101
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=61.94 E-value=1.7 Score=36.53 Aligned_cols=48 Identities=21% Similarity=0.488 Sum_probs=32.9
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCc
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTI 108 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I 108 (247)
..|.+|... |+ .+.=-.|--.||..|++.=+...|. ....||.|+..-
T Consensus 3 ~~C~~C~~~---g~--ll~Cd~C~~~~H~~Cl~p~l~~~p~----g~W~C~~C~~~~ 50 (189)
T 2ro1_A 3 TICRVCQKP---GD--LVMCNQCEFCFHLDCHLPALQDVPG----EEWSCSLCHVLP 50 (189)
T ss_dssp CCBTTTCCC---SS--CCCCTTTCCBCCSTTSTTCCSSCCC----TTCCTTTTSCSC
T ss_pred CcCccCCCC---Cc--eeECCCCCchhccccCCCCcccCCC----CCCCCcCccCCC
Confidence 569999843 32 2222379999999999876655443 356799998764
No 102
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=61.56 E-value=3.8 Score=30.02 Aligned_cols=33 Identities=18% Similarity=0.373 Sum_probs=25.6
Q ss_pred CccccccccccccccCCeEE-ecCCCccCHHHHHH-HH
Q 025846 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVS-HI 87 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~-WL 87 (247)
..|.||++.+... .+.. |.|+|.|=..||.. |.
T Consensus 4 ~~C~~C~~~~~~~---av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 4 VLCQFCDQDPAQD---AVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CBCTTCCSSSCCB---CCEEETTTTEEECHHHHHHHSC
T ss_pred CCCcCCCCCCCCC---ceEECCcCChHHhHHHCHHHhc
Confidence 5799999875432 3444 89999999999998 44
No 103
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=61.51 E-value=4.4 Score=29.26 Aligned_cols=46 Identities=28% Similarity=0.660 Sum_probs=30.4
Q ss_pred CCccccccccccccccCCeEEe-c--CC-CccCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 025846 51 PPKCCQCQAVLEEESGSETTRL-G--CL-HVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTT 107 (247)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL-~--C~-HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~ 107 (247)
+.-| ||...- .+ +.+.= . |. .-||..|+. |...|. ..+.||.|+..
T Consensus 16 ~~~C-~C~~~~-~g---~MI~CD~~~C~~~wfH~~Cvg--l~~~p~----g~w~Cp~C~~~ 65 (71)
T 1wen_A 16 PTYC-LCHQVS-YG---EMIGCDNPDCSIEWFHFACVG--LTTKPR----GKWFCPRCSQE 65 (71)
T ss_dssp CCCS-TTCCCS-CS---SEECCSCSSCSCCCEETTTTT--CSSCCS----SCCCCTTTSSC
T ss_pred CCEE-ECCCCC-CC---CEeEeeCCCCCCccEecccCC--cCcCCC----CCEECCCCCcc
Confidence 3567 898863 23 33332 4 76 699999998 544332 46889999653
No 104
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=60.70 E-value=0.97 Score=31.92 Aligned_cols=46 Identities=24% Similarity=0.640 Sum_probs=32.5
Q ss_pred CccccccccccccccCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 025846 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTT 107 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~ 107 (247)
..|.||... + +++. -.|.-.||..||+.-|...|. ....||.|...
T Consensus 9 ~~C~vC~~~---g---~ll~CD~C~~~fH~~Cl~ppl~~~P~----g~W~C~~C~~~ 55 (66)
T 1xwh_A 9 DECAVCRDG---G---ELICCDGCPRAFHLACLSPPLREIPS----GTWRCSSCLQA 55 (66)
T ss_dssp CSBSSSSCC---S---SCEECSSCCCEECTTTSSSCCSSCCS----SCCCCHHHHHT
T ss_pred CCCccCCCC---C---CEEEcCCCChhhcccccCCCcCcCCC----CCeECccccCc
Confidence 679999853 3 2333 379999999999976655442 35679999653
No 105
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.24 E-value=6.8 Score=26.64 Aligned_cols=40 Identities=18% Similarity=0.444 Sum_probs=28.1
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P 110 (247)
+.|..|.+.+..++ ++++ .=+.+||.+| |+|-.|+++|..
T Consensus 6 ~~C~~C~~~I~~~~--~~~~-a~~~~~H~~C----------------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 6 SGCSACGETVMPGS--RKLE-YGGQTWHEHC----------------FLCSGCEQPLGS 45 (72)
T ss_dssp CBCSSSCCBCCSSS--CEEC-STTCCEETTT----------------CBCTTTCCBTTT
T ss_pred CCCccCCCccccCc--cEEE-ECccccCccc----------------CeECCCCCcCCC
Confidence 78999999987643 3333 3356888766 358889888764
No 106
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=60.09 E-value=7.3 Score=30.01 Aligned_cols=57 Identities=21% Similarity=0.254 Sum_probs=38.8
Q ss_pred CCccccccccccccccCCeEEe--cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCC
Q 025846 51 PPKCCQCQAVLEEESGSETTRL--GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKN 113 (247)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL--~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~~~ 113 (247)
.-.|.+|.+.|++.- -|.- .=+|.|-..|-...++++..++ ..-||.=.+..++.++
T Consensus 15 ~l~CtlC~erLEdtH---FVQCPsv~~HkFCFpCsr~sIk~q~~~~---EvyCPSG~kCpL~gS~ 73 (93)
T 2cs3_A 15 PLCCTICHERLEDTH---FVQCPSVPSHKFCFPCSRESIKAQGATG---EVYCPSGEKCPLVGSN 73 (93)
T ss_dssp SCCCSSSCSCCSSTT---SEECSSCSSCEECHHHHHHHHHHHHSSS---CCCCTTSSCCBCSSSS
T ss_pred eeEeecchhhhccCc---eeeCCCccCCeeeccccHHHHHhcCCCC---cEECCCCCccccCCCc
Confidence 467999999998753 5554 3579999999999998875443 2235544444444433
No 107
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=58.87 E-value=7.8 Score=26.73 Aligned_cols=40 Identities=23% Similarity=0.487 Sum_probs=28.1
Q ss_pred Cccccccccccc---cccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 025846 52 PKCCQCQAVLEE---ESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (247)
Q Consensus 52 ~~C~ICle~L~~---gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P 110 (247)
+.|+.|.+.+.. .. +.++. =+..||.+| |+|-.|+++|..
T Consensus 16 ~~C~~C~~~I~~~g~~~--~~~~a-~~~~~H~~C----------------F~C~~C~~~L~~ 58 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGS--SVVAY-EGQSWHDYC----------------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCSSSCCCCCCCSSCC--CEEEE-TTEEEETTT----------------CBCSSSCCBCTT
T ss_pred ccCcccCCcccCCCCCc--eeEEE-CcceeCccc----------------CEehhcCCCCCC
Confidence 789999999875 22 33332 356888776 359999998864
No 108
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=58.16 E-value=1.5 Score=32.43 Aligned_cols=47 Identities=23% Similarity=0.615 Sum_probs=29.9
Q ss_pred ccccccccccccccCCeEEe--cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 025846 53 KCCQCQAVLEEESGSETTRL--GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (247)
Q Consensus 53 ~C~ICle~L~~gD~~evvRL--~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~ 106 (247)
.|.+|...=.. +.+.+ .|...||..||+.-|...|.. ....||.|+.
T Consensus 28 ~C~vC~~~~d~----~~ll~CD~C~~~yH~~Cl~PpL~~~P~g---~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDP----DKQLMCDECDMAFHIYCLDPPLSSVPSE---DEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCG----GGEEECTTTCCEEETTTSSSCCSSCCSS---SCCCCTTTC-
T ss_pred cCCccCCCCCC----cceeEeCCCCCccCcccCCCcccCCCCC---CceECcCccc
Confidence 46666654222 23333 699999999999877665431 1268999975
No 109
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=58.07 E-value=1.9 Score=27.70 Aligned_cols=13 Identities=31% Similarity=1.096 Sum_probs=10.8
Q ss_pred CCCCCCCCCCCcc
Q 025846 97 AGYVCPLCSTTIW 109 (247)
Q Consensus 97 agy~CP~Cr~~I~ 109 (247)
.||.||+|++.+-
T Consensus 4 EGFiCP~C~~~l~ 16 (34)
T 3mjh_B 4 EGFICPQCMKSLG 16 (34)
T ss_dssp EEEECTTTCCEES
T ss_pred cccCCcHHHHHcC
Confidence 5799999988765
No 110
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=58.04 E-value=0.62 Score=33.13 Aligned_cols=50 Identities=20% Similarity=0.505 Sum_probs=31.0
Q ss_pred CccccccccccccccCCeEEe---cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 025846 52 PKCCQCQAVLEEESGSETTRL---GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCS 105 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL---~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr 105 (247)
..| ||......+ ..+.- .|.-=||..|+.---........|..|.||.||
T Consensus 11 v~C-~C~~~~~~g---~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr 63 (68)
T 2rsd_A 11 VRC-ICSSTMVND---SMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCR 63 (68)
T ss_dssp ECC-TTCCCSCCS---CEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHH
T ss_pred EEe-ECCCCcCCC---CEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCcc
Confidence 457 798775554 35554 399899999984211111112235679999996
No 111
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=57.69 E-value=9.7 Score=29.22 Aligned_cols=29 Identities=24% Similarity=0.532 Sum_probs=22.1
Q ss_pred CCCCCCCCCCccCCCCCCCCcchHHHHHHHHhhh
Q 025846 98 GYVCPLCSTTIWPPKNVKDSGSRLHSLLKEAIML 131 (247)
Q Consensus 98 gy~CP~Cr~~I~P~~~i~d~~S~l~~~Lre~i~q 131 (247)
..+||.|.. .++.|++++++.-||..+.+
T Consensus 23 ~LRCpvCqn-----qsI~dSnA~iA~dlR~~Vre 51 (90)
T 2kw0_A 23 ELRCPKCQN-----NSIADSNSMIATDLRQKVYE 51 (90)
T ss_dssp SSBCSCTTS-----CTTTSCCCHHHHHHHHHHHH
T ss_pred cCcCCCCCC-----CchhhcCcHHHHHHHHHHHH
Confidence 467999965 45677788999988886663
No 112
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=55.86 E-value=7.8 Score=27.97 Aligned_cols=53 Identities=21% Similarity=0.346 Sum_probs=34.6
Q ss_pred CccccccccccccccCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 025846 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P 110 (247)
..| ||..+..++. .-+. -.|..=||..|+.--.... ..+..|.||.|+..--|
T Consensus 13 ~~C-~C~~~~d~~~--~MIqCd~C~~WfH~~Cvgl~~~~~---~~~~~~~C~~C~~~~~~ 66 (79)
T 1wep_A 13 VYC-LCRQPYNVNH--FMIECGLCQDWFHGSCVGIEEENA---VDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp CCS-TTSCSCCSSS--CEEEBTTTCCEEEHHHHTCCHHHH---TTCSBBCCTTTTTTSCS
T ss_pred cEE-EcCCccCCCC--ceEEcCCCCCcEEeeecCcccccc---cCCCeEECCCcccccCC
Confidence 455 9998875332 3444 3799999999996332211 01357999999876554
No 113
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=54.84 E-value=1.6 Score=35.41 Aligned_cols=50 Identities=24% Similarity=0.419 Sum_probs=32.1
Q ss_pred CccccccccccccccCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 025846 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTT 107 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~ 107 (247)
..| +|..+..++. ..+. =.|...||..|+.--.... ..+..|.||.|+..
T Consensus 9 ~~C-~C~~~~~~~~--~mi~Cd~C~~WfH~~Cv~~~~~~~---~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 9 LYC-ICKTPEDESK--FYIGCDRCQNWYHGRCVGILQSEA---ELIDEYVCPQCQST 59 (174)
T ss_dssp EET-TTTEECCTTS--CEEECTTTCCEEEHHHHTCCHHHH---TTCSSCCCHHHHHH
T ss_pred cEe-eCCCCCCCCC--CEeECCCCCchhChhhcCCchhhc---cCccCeecCCCcch
Confidence 678 9998864332 3333 2799999999995321110 11357899999764
No 114
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=53.46 E-value=5.8 Score=31.15 Aligned_cols=53 Identities=21% Similarity=0.395 Sum_probs=37.9
Q ss_pred cccCCCCCCCccccccccccccccCCeEEecCC-CccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 025846 43 VIDGEYDWPPKCCQCQAVLEEESGSETTRLGCL-HVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (247)
Q Consensus 43 L~Dsdyd~~~~C~ICle~L~~gD~~evvRL~C~-HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P 110 (247)
+-|..+--+.+|-.|-...+. . +.|+ |.+-..||...|... -.||+|.+++-.
T Consensus 20 ~~d~s~~G~~nCKsCWf~~k~-----L--V~C~dHYLCl~CLtlmL~~S--------drCpIC~~pLPt 73 (99)
T 2ko5_A 20 IPDATHLGPQFCKSCWFENKG-----L--VECNNHYLCLNCLTLLLSVS--------NRCPICKMPLPT 73 (99)
T ss_dssp SSSCCCSCCCCCCSSCSCCSS-----E--EECSSCEEEHHHHHHTCSSS--------SEETTTTEECCC
T ss_pred cCCccccCcccChhhccccCC-----e--eeecchhhHHHHHHHHHhhc--------cCCcccCCcCCc
Confidence 345554446789999877532 1 2465 999999999999763 359999998753
No 115
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=52.34 E-value=1 Score=32.21 Aligned_cols=55 Identities=22% Similarity=0.509 Sum_probs=35.9
Q ss_pred CCCCccccccccccccccCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 025846 49 DWPPKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (247)
Q Consensus 49 d~~~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P 110 (247)
++...| ||..+..++. ..+. -.|..=||..|+.--.. ...|..|.||.|+..--|
T Consensus 14 ~~~~~C-~C~~~~~~g~--~mI~Cd~C~~W~H~~Cvg~~~~----~~~~~~~~C~~C~~~~~p 69 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGE--RMLACDGCGVWHHTRCIGINNA----DALPSKFLCFRCIELSGP 69 (72)
T ss_dssp SSEECC-TTCCCSCCSS--CEEECSSSCEEEETTTTTCCTT----SCCCSCCCCHHHHHHCSS
T ss_pred CcceEe-eCCCccCCCC--cEEECCCCCCccCCeeeccCcc----ccCCCcEECCCccCCCCC
Confidence 344678 7988765442 3444 27999999999864321 123578999999765444
No 116
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.02 E-value=10 Score=26.45 Aligned_cols=38 Identities=18% Similarity=0.418 Sum_probs=24.3
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P 110 (247)
+.|+.|.+.+. + +.++ .-+..||.+| |+|-.|+++|..
T Consensus 16 ~~C~~C~~~I~-~---~~~~-a~~~~~H~~C----------------F~C~~C~~~L~~ 53 (81)
T 1x6a_A 16 EFCHGCSLLMT-G---PFMV-AGEFKYHPEC----------------FACMSCKVIIED 53 (81)
T ss_dssp CBCTTTCCBCC-S---CCBC-CTTCCBCTTS----------------CBCTTTCCBCCT
T ss_pred CcCccCCCCcC-c---eEEE-ECCceecccc----------------CCccCCCCccCC
Confidence 67888888887 2 2222 2256677655 358888888754
No 117
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=51.56 E-value=20 Score=28.92 Aligned_cols=47 Identities=13% Similarity=0.403 Sum_probs=30.1
Q ss_pred CccccccccccccccCCeEE-ecCCCccCHHHHHHHH-----hcCCCCCCCCCCCCCCCCC
Q 025846 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHI-----KSFPPHTAPAGYVCPLCST 106 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL-----~~~p~nTAPagy~CP~Cr~ 106 (247)
..|.+|.+. | +++- =.|-.+||.+||+.-+ .... .+.....|+.|+.
T Consensus 58 ~~C~vC~dG---G---~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~--~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 58 EQCRWCAEG---G---NLICCDFCHNAFCKKCILRNLGRRELSTIM--DENNQWYCYICHP 110 (129)
T ss_dssp SSCTTTCCC---S---EEEECSSSSCEEEHHHHHHHTCHHHHHHHT--CTTSCCCCTTTCC
T ss_pred CcCeecCCC---C---eeEecCCCchhhhHHHhCCCcchhHHHHhc--cCCCCeEcCCcCC
Confidence 779999853 2 2221 2699999999999752 2210 0124578999943
No 118
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.68 E-value=5.7 Score=27.53 Aligned_cols=39 Identities=26% Similarity=0.482 Sum_probs=28.4
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P 110 (247)
+.|+.|.+.+..++ .+. .-+..||.+| |+|-.|+++|..
T Consensus 10 ~~C~~C~~~I~~~~---~v~-a~~~~~H~~C----------------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 10 SKCPKCDKTVYFAE---KVS-SLGKDWHKFC----------------LKCERCSKTLTP 48 (76)
T ss_dssp CBCTTTCCBCCTTT---EEE-ETTEEEETTT----------------CBCSSSCCBCCT
T ss_pred CCCcCCCCEeECCe---EEE-ECCeEeeCCC----------------CCCCCCCCccCC
Confidence 78999999998653 332 3366788766 359999998874
No 119
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=50.49 E-value=4.1 Score=29.14 Aligned_cols=46 Identities=24% Similarity=0.494 Sum_probs=31.9
Q ss_pred CccccccccccccccCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 025846 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~ 106 (247)
..| ||..+.. +. ..+. -.|..=||..|+.--. ..+|..|.||.|+.
T Consensus 20 ~~C-iC~~~~~-~~--~MIqCd~C~~WfH~~Cvgi~~-----~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 20 VTC-FCMKPFA-GR--PMIECNECHTWIHLSCAKIRK-----SNVPEVFVCQKCRD 66 (68)
T ss_dssp CCS-TTCCCCT-TC--CEEECTTTCCEEETTTTTCCT-----TSCCSSCCCHHHHT
T ss_pred eEe-ECCCcCC-CC--CEEECCCCCccccccccCcCc-----ccCCCcEECCCCCC
Confidence 567 9988754 21 3444 3799999999996322 23567899999964
No 120
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.51 E-value=8.3 Score=27.42 Aligned_cols=39 Identities=26% Similarity=0.635 Sum_probs=27.9
Q ss_pred CCccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 025846 51 PPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (247)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~ 109 (247)
.+.|+.|.+.+..++ .+..+ +..||.+| |+|-.|+++|.
T Consensus 15 ~~~C~~C~~~I~~~~--~v~a~--~~~wH~~C----------------F~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQ--SLLAL--DKQWHVSC----------------FKCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSC--CEEET--TEEECTTT----------------CBCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCe--EEEEC--Cccccccc----------------CCcCcCCCCcC
Confidence 368999999987653 34333 56788766 35999988875
No 121
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=48.48 E-value=5.5 Score=30.72 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=23.6
Q ss_pred Cccccccccc----cccccCCeEE-ecCCCccCHHHHHHH
Q 025846 52 PKCCQCQAVL----EEESGSETTR-LGCLHVIHTSCLVSH 86 (247)
Q Consensus 52 ~~C~ICle~L----~~gD~~evvR-L~C~HvFH~~CLd~W 86 (247)
+.|.+|+..- ..|++++.+. -.|...||..||+..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 5799998764 2233223333 379999999999754
No 122
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=48.35 E-value=4.5 Score=26.69 Aligned_cols=30 Identities=27% Similarity=0.548 Sum_probs=23.7
Q ss_pred cccccceeeeeccCccCcccccCCCCceee
Q 025846 7 RKATKLYCFVHKVPVCGECICFPEHQICVV 36 (247)
Q Consensus 7 rk~T~~fCf~HrvnVCe~Ci~~~~H~~CvV 36 (247)
++.-++||-+.+..||..|....+|..-.+
T Consensus 15 ~e~l~lfC~~d~~~iC~~C~~~~~H~~H~~ 44 (53)
T 2did_A 15 HEALSLFCYEDQEAVCLICAISHTHRAHTV 44 (53)
T ss_dssp CCBCCEEESSSCSEECHHHHTSSTTTTSCE
T ss_pred CCeeeEEeCCCCeEEeccccCCCCCCCCcE
Confidence 567889999999999999986567754433
No 123
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=47.98 E-value=17 Score=27.04 Aligned_cols=52 Identities=17% Similarity=0.328 Sum_probs=32.2
Q ss_pred CCCccccccccccccccCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCc
Q 025846 50 WPPKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTI 108 (247)
Q Consensus 50 ~~~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I 108 (247)
.+..|.||...-...+ .+++. -.|.-.||..|+..-+ .|. ....||.|....
T Consensus 24 ~~~~C~vC~~~~s~~~-~~ll~CD~C~~~fH~~Cl~p~~--vP~----g~W~C~~C~~~~ 76 (88)
T 2l43_A 24 EDAVCSICMDGESQNS-NVILFCDMCNLAVHQECYGVPY--IPE----GQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCSSCCSSSSCSE-EEEEECSSSCCCCCHHHHTCSS--CCS----SCCCCHHHHHHT
T ss_pred CCCcCCcCCCCCCCCC-CCEEECCCCCchhhcccCCCCc--cCC----CceECccccCcc
Confidence 3478999987632211 12222 2699999999998532 222 356799996543
No 124
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=47.21 E-value=1.9 Score=32.28 Aligned_cols=49 Identities=16% Similarity=0.462 Sum_probs=32.2
Q ss_pred CccccccccccccccCCeEEe--cCCCccCHHHHHHHHhc----CCCCCCCCCCCCCCCCC
Q 025846 52 PKCCQCQAVLEEESGSETTRL--GCLHVIHTSCLVSHIKS----FPPHTAPAGYVCPLCST 106 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL--~C~HvFH~~CLd~WL~~----~p~nTAPagy~CP~Cr~ 106 (247)
..|.||...=...+ ..+.+ .|...||..|++.-|.. .+. ....|+.|..
T Consensus 17 ~~C~vC~~~~~~~~--~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~----g~W~C~~C~~ 71 (88)
T 1wev_A 17 LACVVCRQMTVASG--NQLVECQECHNLYHQDCHKPQVTDKEVNDPR----LVWYCARCTR 71 (88)
T ss_dssp CSCSSSCCCCCCTT--CCEEECSSSCCEEETTTSSSCCCHHHHHCTT----CCCCCHHHHH
T ss_pred CcCCCCCCCCCCCC--CceEECCCCCCeEcCccCCCcccccccCCCC----CCeeCccccc
Confidence 67999997633221 23333 69999999999876542 222 3567998854
No 125
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.15 E-value=11 Score=25.93 Aligned_cols=41 Identities=17% Similarity=0.451 Sum_probs=28.1
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
..|+.|.+.+..++ .+++. =+.+||.+| |+|-.|+++|...
T Consensus 12 ~~C~~C~~~I~~~~--~~~~a-~~~~~H~~C----------------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 12 ATCERCKGGFAPAE--KIVNS-NGELYHEQC----------------FVCAQCFQQFPEG 52 (77)
T ss_dssp CBCSSSCCBCCSTT--TCEEE-TTEEECTTT----------------CCCTTTCCCCGGG
T ss_pred CCchhcCCccCCCc--eEEEe-CccEecccc----------------CeECCCCCCCCCC
Confidence 78999999987543 34332 255778766 3588898887653
No 126
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=46.88 E-value=2.7 Score=29.65 Aligned_cols=44 Identities=27% Similarity=0.596 Sum_probs=28.8
Q ss_pred CccccccccccccccCCeEEe-c--CC-CccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 025846 52 PKCCQCQAVLEEESGSETTRL-G--CL-HVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~--C~-HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~ 106 (247)
.-| +|...- .| +.+.= . |. .-||..|+. |...+ ...+.||.|+.
T Consensus 12 ~yC-~C~~~~-~g---~MI~CD~c~C~~~WfH~~Cvg--l~~~p----~~~w~Cp~C~~ 59 (62)
T 2g6q_A 12 TYC-LCNQVS-YG---EMIGCDNEQCPIEWFHFSCVS--LTYKP----KGKWYCPKCRG 59 (62)
T ss_dssp EET-TTTEEC-CS---EEEECSCTTCSSCEEETGGGT--CSSCC----SSCCCCHHHHT
T ss_pred cEE-ECCCCC-CC---CeeeeeCCCCCcccEecccCC--cCcCC----CCCEECcCccc
Confidence 567 998862 23 23332 5 65 899999998 44332 24688999964
No 127
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.88 E-value=1.9 Score=32.48 Aligned_cols=48 Identities=25% Similarity=0.494 Sum_probs=32.4
Q ss_pred CccccccccccccccCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 025846 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~ 106 (247)
..|.||...=..+ .++. =.|...||..||+.=|...|. ....||.|..
T Consensus 17 ~~C~vC~~~~~~~---~ll~CD~C~~~~H~~Cl~Ppl~~~P~----g~W~C~~C~~ 65 (92)
T 2e6r_A 17 YICQVCSRGDEDD---KLLFCDGCDDNYHIFCLLPPLPEIPR----GIWRCPKCIL 65 (92)
T ss_dssp CCCSSSCCSGGGG---GCEECTTTCCEECSSSSSSCCSSCCS----SCCCCHHHHH
T ss_pred CCCccCCCcCCCC---CEEEcCCCCchhccccCCCCcccCCC----CCcCCccCcC
Confidence 5699998763322 2222 279999999999865655443 3567999954
No 128
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.90 E-value=19 Score=25.08 Aligned_cols=39 Identities=21% Similarity=0.545 Sum_probs=25.8
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~ 109 (247)
+.|+.|.+.+..++ .+++. =+..||.+| |+|-.|+++|.
T Consensus 16 ~~C~~C~~~I~~~~--~~~~a-~~~~~H~~C----------------F~C~~C~~~L~ 54 (82)
T 2ehe_A 16 NTCAECQQLIGHDS--RELFY-EDRHFHEGC----------------FRCCRCQRSLA 54 (82)
T ss_dssp CBCTTTCCBCCSSC--CBCCC-SSCCCBTTT----------------SBCTTTCCBCS
T ss_pred CcCccCCCccccCc--EEEEe-CCccccccC----------------CeecCCCCccC
Confidence 68999999987422 33332 256777665 35888888775
No 129
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=45.78 E-value=9.5 Score=29.11 Aligned_cols=40 Identities=23% Similarity=0.500 Sum_probs=28.6
Q ss_pred ccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 53 KCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 53 ~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
.|+.|.+.+...+ .+++. =+.+||.+| |+|-.|+++|.+.
T Consensus 10 ~C~~C~~~I~~~e--~~~~a-~~~~~H~~C----------------F~C~~C~~~L~~g 49 (123)
T 2l3k_A 10 LCASCDKRIRAYE--MTMRV-KDKVYHLEC----------------FKCAACQKHFSVG 49 (123)
T ss_dssp CCSSSSCCCCTTC--CCCCC-SSCCCCTTT----------------CBCTTTCCBCCTT
T ss_pred cccCCCCeecCCc--eEEEE-CCccccccc----------------CccccCCCCCCCC
Confidence 7999999997643 33332 267888876 3599999988543
No 130
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.51 E-value=16 Score=24.81 Aligned_cols=39 Identities=21% Similarity=0.553 Sum_probs=23.9
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~ 109 (247)
+.|..|.+.+...+ ..++ .=+..||.+| |+|-.|+++|.
T Consensus 6 ~~C~~C~~~I~~~~--~~~~-a~~~~~H~~C----------------F~C~~C~~~L~ 44 (72)
T 1x61_A 6 SGCGGCGEDVVGDG--AGVV-ALDRVFHVGC----------------FVCSTCRAQLR 44 (72)
T ss_dssp CCCSSSCSCCCSSS--CCEE-CSSSEECTTT----------------CBCSSSCCBCT
T ss_pred CCCccCCCccCCCc--eEEE-ECCCeEcccC----------------CcccccCCcCC
Confidence 67888888776532 2222 2256777665 34888887773
No 131
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=44.42 E-value=2.9 Score=29.07 Aligned_cols=44 Identities=27% Similarity=0.634 Sum_probs=28.8
Q ss_pred CccccccccccccccCCeEEe-c--CC-CccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 025846 52 PKCCQCQAVLEEESGSETTRL-G--CL-HVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~--C~-HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~ 106 (247)
.-| ||...- .| +.+.= . |. .-||..|+. |...|. ..+.||.|+.
T Consensus 11 ~~C-~C~~~~-~g---~mi~CD~cdC~~~wfH~~Cvg--l~~~p~----g~w~C~~C~~ 58 (60)
T 2vnf_A 11 TYC-LCHQVS-YG---EMIGCDNPDCSIEWFHFACVG--LTTKPR----GKWFCPRCSQ 58 (60)
T ss_dssp EET-TTTEEC-CS---EEEECSCTTCSSCEEETGGGT--CSSCCS----SCCCCHHHHC
T ss_pred CEE-ECCCcC-CC---CEEEeCCCCCCCceEehhcCC--CCcCCC----CCEECcCccC
Confidence 556 898863 22 23332 4 65 789999998 555432 4688999854
No 132
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=44.20 E-value=5.4 Score=35.18 Aligned_cols=47 Identities=23% Similarity=0.552 Sum_probs=28.4
Q ss_pred CccccccccccccccCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCC--CCCCCCCC
Q 025846 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAG--YVCPLCST 106 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTAPag--y~CP~Cr~ 106 (247)
-.|.+|...=..+ ..+- =.|...||..||+.=|...| .| ..||.|..
T Consensus 175 c~C~vC~~~~~~~---~lL~CD~C~~~yH~~CL~PPL~~vP-----~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPD---KQLMCDECDMAFHIYCLDPPLSSVP-----SEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC-----CCEECSSSCCEECSCC--CCCCSCC-----SSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCC---CeEEcCCCCcceeCccCCCCcccCC-----CCCCCCCcCCcC
Confidence 4588887642222 2222 27999999999997665543 34 67999964
No 133
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=44.17 E-value=19 Score=25.81 Aligned_cols=48 Identities=19% Similarity=0.461 Sum_probs=30.4
Q ss_pred CCccccccccccccccCCeEEe--cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 025846 51 PPKCCQCQAVLEEESGSETTRL--GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (247)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL--~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~ 106 (247)
...|.||...-...+ +.+.+ .|.-.||..|+..-. .|. ....||.|..
T Consensus 16 ~~~C~vC~~~~s~~~--~~ll~CD~C~~~~H~~Cl~~~~--vP~----g~W~C~~C~~ 65 (71)
T 2ku3_A 16 DAVCSICMDGESQNS--NVILFCDMCNLAVHQECYGVPY--IPE----GQWLCRHCLQ 65 (71)
T ss_dssp SCSCSSSCCCCCCSS--SCEEECSSSCCEEEHHHHTCSS--CCS----SCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCC--CCEEECCCCCCccccccCCCCc--CCC----CCcCCccCcC
Confidence 467999987632221 23333 799999999997431 222 3467888843
No 134
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=43.72 E-value=3.1 Score=28.95 Aligned_cols=44 Identities=25% Similarity=0.613 Sum_probs=29.3
Q ss_pred CccccccccccccccCCeEEe-c--CC-CccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 025846 52 PKCCQCQAVLEEESGSETTRL-G--CL-HVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL-~--C~-HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~ 106 (247)
.-| +|.+.- .| +.+.= . |. .-||..|+. |...|. ..+.||.|+.
T Consensus 10 ~yC-~C~~~~-~g---~mi~CD~~~C~~~wfH~~Cvg--l~~~p~----~~w~Cp~C~~ 57 (59)
T 3c6w_A 10 TYC-LCHQVS-YG---EMIGCDNPDCPIEWFHFACVD--LTTKPK----GKWFCPRCVQ 57 (59)
T ss_dssp EET-TTTEEC-CS---EEEECSCTTCSSCEEETGGGT--CSSCCS----SCCCCHHHHC
T ss_pred cEE-ECCCCC-CC---CeeEeeCCCCCCCCEecccCC--cccCCC----CCEECcCccC
Confidence 566 998873 23 23332 5 76 799999998 554432 4688999954
No 135
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.45 E-value=12 Score=25.41 Aligned_cols=40 Identities=18% Similarity=0.509 Sum_probs=27.0
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P 110 (247)
+.|+.|.+.+..++ .+++. =+.+||.+| |+|-.|+++|..
T Consensus 6 ~~C~~C~~~I~~~~--~~~~a-~~~~~H~~C----------------F~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGT--RKMEY-KGSSWHETC----------------FICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSS--CEEEE-TTEEEETTT----------------TCCSSSCCCCCS
T ss_pred CCCccCCCcccCCc--eEEEE-CcCeecccC----------------CcccccCCccCC
Confidence 67999999887653 33332 355777665 348888887754
No 136
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=43.06 E-value=16 Score=27.53 Aligned_cols=29 Identities=24% Similarity=0.535 Sum_probs=21.6
Q ss_pred CCCCCCCCCCccCCCCCCCCcchHHHHHHHHhhh
Q 025846 98 GYVCPLCSTTIWPPKNVKDSGSRLHSLLKEAIML 131 (247)
Q Consensus 98 gy~CP~Cr~~I~P~~~i~d~~S~l~~~Lre~i~q 131 (247)
..+||.|.. .++.|++++++..||..+.+
T Consensus 26 ~LRCp~Cqn-----qsi~dSna~iA~dlR~~V~~ 54 (84)
T 2hl7_A 26 ELRCPKCQN-----QDIADSNAPIAADLRKQIYG 54 (84)
T ss_dssp HEECTTSSS-----CBTTTCCSHHHHHHHHHHHH
T ss_pred cCcCCCCCC-----CchhhcCcHHHHHHHHHHHH
Confidence 357999965 34667788999988887663
No 137
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.21 E-value=18 Score=24.52 Aligned_cols=40 Identities=18% Similarity=0.469 Sum_probs=27.6
Q ss_pred Cccccccccccc-cccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 025846 52 PKCCQCQAVLEE-ESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (247)
Q Consensus 52 ~~C~ICle~L~~-gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~ 109 (247)
..|..|.+.+.. ++ +.+++. -+..||.+|+ +|-.|+++|.
T Consensus 6 ~~C~~C~~~I~~~~~-~~~~~a-~~~~wH~~CF----------------~C~~C~~~L~ 46 (72)
T 1x4l_A 6 SGCAGCTNPISGLGG-TKYISF-EERQWHNDCF----------------NCKKCSLSLV 46 (72)
T ss_dssp CSBTTTTBCCCCSSS-CSCEEC-SSCEECTTTC----------------BCSSSCCBCT
T ss_pred CCCcCCCccccCCCC-cceEEE-CCcccCcccC----------------EeccCCCcCC
Confidence 689999999875 12 134332 4678887763 4889988875
No 138
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=42.21 E-value=8.2 Score=26.10 Aligned_cols=29 Identities=34% Similarity=0.892 Sum_probs=23.3
Q ss_pred ccccceeeeeccCccCcccccCCCCceee
Q 025846 8 KATKLYCFVHKVPVCGECICFPEHQICVV 36 (247)
Q Consensus 8 k~T~~fCf~HrvnVCe~Ci~~~~H~~CvV 36 (247)
+.-++||-.-+..||..|....+|..-.+
T Consensus 17 e~l~lfC~~d~~~iC~~C~~~~~H~~H~~ 45 (64)
T 2d8u_A 17 EKINIYCLTCEVPTCSMCKVFGIHKACEV 45 (64)
T ss_dssp CCCCSEESSSCCCCCSHHHHSSSTTSSCE
T ss_pred CccceEcCcCCceeCccccCCCcCCCCCe
Confidence 46789999999999999986567765444
No 139
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=42.12 E-value=21 Score=33.56 Aligned_cols=50 Identities=14% Similarity=0.404 Sum_probs=35.7
Q ss_pred CccccccccccccccCCeEE-ecCCCc--cCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCC
Q 025846 52 PKCCQCQAVLEEESGSETTR-LGCLHV--IHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPK 112 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~Hv--FH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~~ 112 (247)
-.|++=...|.. .+| ..|.|+ |-.+=+-.+..+. ....||+|.+.+-+.+
T Consensus 250 L~CPlS~~ri~~-----PvRg~~C~HlQCFDl~sfL~~~~~~------~~W~CPIC~k~~~~~d 302 (371)
T 3i2d_A 250 LQCPISYTRMKY-----PSKSINCKHLQCFDALWFLHSQLQI------PTWQCPVCQIDIALEN 302 (371)
T ss_dssp SBCTTTSSBCSS-----EEEETTCCSSCCEEHHHHHHHHHHS------CCCBCTTTCCBCCGGG
T ss_pred ecCCCccccccc-----cCcCCcCCCcceECHHHHHHHhhcC------CceeCCCCCcccCHHH
Confidence 568877777644 566 589998 7777666665553 2468999999887643
No 140
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=41.89 E-value=5 Score=26.01 Aligned_cols=28 Identities=32% Similarity=0.884 Sum_probs=22.4
Q ss_pred ccccceeeeeccCccCcccccCCCCcee
Q 025846 8 KATKLYCFVHKVPVCGECICFPEHQICV 35 (247)
Q Consensus 8 k~T~~fCf~HrvnVCe~Ci~~~~H~~Cv 35 (247)
+..++||-+-+..||..|....+|..-.
T Consensus 15 e~l~lfC~~d~~~iC~~C~~~~~H~~H~ 42 (48)
T 3ddt_A 15 EKINIYCLTCEVPTCSMCKVFGIHKACE 42 (48)
T ss_dssp SBCCEEETTTTEEECHHHHHHSTTTTSC
T ss_pred ccccEEcCCCCeeEcccccCCCcCCCCc
Confidence 5688999999999999997556675443
No 141
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.84 E-value=20 Score=24.75 Aligned_cols=37 Identities=30% Similarity=0.645 Sum_probs=24.5
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~ 109 (247)
+.|+.|.+.+.. +.++ .=+..||.+|+ +|-.|+++|.
T Consensus 16 ~~C~~C~~~I~~----~~v~-a~~~~~H~~CF----------------~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQ----GGVT-YRDQPWHRECL----------------VCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCS----CCEE-SSSSEECTTTC----------------BCSSSCCBCT
T ss_pred CcCCCCCCEecC----cEEE-ECCchhhhhhC----------------CcccCCCcCC
Confidence 678888888754 2222 33567777663 4888888874
No 142
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=41.69 E-value=13 Score=26.28 Aligned_cols=48 Identities=17% Similarity=0.404 Sum_probs=32.1
Q ss_pred CccccccccccccccCCeEE-e-cCCCccCHHHHHHH------HhcCCCCCCCCCCCCCCCC
Q 025846 52 PKCCQCQAVLEEESGSETTR-L-GCLHVIHTSCLVSH------IKSFPPHTAPAGYVCPLCS 105 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L-~C~HvFH~~CLd~W------L~~~p~nTAPagy~CP~Cr 105 (247)
..|++|..++.+++ .-+. - .|.--||..|+.-= |...+. ..|.||.|.
T Consensus 9 ~~C~~C~~p~~~~~--~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~----~~w~C~~C~ 64 (65)
T 2vpb_A 9 YPCGICTNEVNDDQ--DAILCEASCQKWFHRICTGMTETAYGLLTAEAS----AVWGCDTCM 64 (65)
T ss_dssp CBCTTTCSBCCTTS--CEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTT----EEECCHHHH
T ss_pred CcCccCCCccCCCC--CeEecccCccccCchhccCCCHHHHHHhhccCC----CcEECcCcc
Confidence 57999999987653 3444 3 79999999998322 221111 367898884
No 143
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=40.91 E-value=7.7 Score=23.58 Aligned_cols=28 Identities=18% Similarity=0.565 Sum_probs=19.7
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHH
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCL 83 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CL 83 (247)
+.|+.|....-..+ .+.. =+.+||..|+
T Consensus 4 ~~C~~C~k~Vy~~E--k~~~--~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTE--KVNC--LDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGG--CCCS--SSSCCCGGGC
T ss_pred CcCCccCCEEecce--eEEE--CCeEecccCC
Confidence 68999998876543 2332 3689999884
No 144
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=40.90 E-value=13 Score=28.93 Aligned_cols=45 Identities=24% Similarity=0.478 Sum_probs=29.0
Q ss_pred CCCccccccccccccccCCeEEe---cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 025846 50 WPPKCCQCQAVLEEESGSETTRL---GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (247)
Q Consensus 50 ~~~~C~ICle~L~~gD~~evvRL---~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~ 106 (247)
.+..|.+|.. .| +.+.= .|--.||..||. |...|. ....||.|.-
T Consensus 14 ~~~~C~~C~~---~G---~ll~CD~~~Cp~~fH~~Cl~--L~~~P~----g~W~Cp~c~C 61 (107)
T 4gne_A 14 HEDYCFQCGD---GG---ELVMCDKKDCPKAYHLLCLN--LTQPPY----GKWECPWHQC 61 (107)
T ss_dssp SCSSCTTTCC---CS---EEEECCSTTCCCEECTGGGT--CSSCCS----SCCCCGGGBC
T ss_pred CCCCCCcCCC---CC---cEeEECCCCCCcccccccCc--CCcCCC----CCEECCCCCC
Confidence 3467999983 23 33332 488999999998 555432 2456886643
No 145
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.40 E-value=17 Score=25.70 Aligned_cols=40 Identities=30% Similarity=0.630 Sum_probs=27.3
Q ss_pred CCccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 025846 51 PPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (247)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P 110 (247)
...|..|.+.+..++ .+. .=+.+||.+|+ +|-.|+++|..
T Consensus 15 ~~~C~~C~~~I~~~e--~v~--a~~~~wH~~CF----------------~C~~C~~~L~~ 54 (82)
T 2co8_A 15 GDLCALCGEHLYVLE--RLC--VNGHFFHRSCF----------------RCHTCEATLWP 54 (82)
T ss_dssp SCBCSSSCCBCCTTT--BCC--BTTBCCBTTTC----------------BCSSSCCBCCT
T ss_pred CCCCcccCCCcccce--EEE--ECCCeeCCCcC----------------EEcCCCCCcCC
Confidence 468999999986653 232 23567888773 48888887754
No 146
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.58 E-value=17 Score=25.10 Aligned_cols=40 Identities=18% Similarity=0.393 Sum_probs=26.8
Q ss_pred Cccccccccccc-cccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 025846 52 PKCCQCQAVLEE-ESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (247)
Q Consensus 52 ~~C~ICle~L~~-gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~ 109 (247)
+.|+.|.+++.. ++ .+.++ .-+..||.+|+ +|-.|+++|.
T Consensus 6 ~~C~~C~~~I~~~g~-~~~~~-a~~~~wH~~CF----------------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTG-AKFIC-FQDSQWHSECF----------------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTT-CCEEE-ETTEEEEGGGC----------------BCTTTCCBCS
T ss_pred CCCccCCCcccCCCC-ceeEE-ECCcccCcccC----------------ChhhCCCcCC
Confidence 789999999875 12 13333 33567888773 4888888775
No 147
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=38.76 E-value=2.1 Score=33.09 Aligned_cols=78 Identities=22% Similarity=0.439 Sum_probs=43.1
Q ss_pred ccCcccccCCCCceeeee--cccccccCCCCCC--CccccccccccccccCCeEE-ecCCCccCHHHHHHHHhcCCCCCC
Q 025846 21 VCGECICFPEHQICVVRT--YSEWVIDGEYDWP--PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTA 95 (247)
Q Consensus 21 VCe~Ci~~~~H~~CvVqs--YlqWL~Dsdyd~~--~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTA 95 (247)
-|..|-. .-|..|+--+ .++.+...++.=+ ..|.||...-.++ +++. -.|...||..||+.=|...|.
T Consensus 25 ~C~~C~~-~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~---~ll~Cd~C~~~yH~~Cl~ppl~~~P~--- 97 (114)
T 2kwj_A 25 SCADCGR-SGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDD---QLLFCDDCDRGYHMYCLNPPVAEPPE--- 97 (114)
T ss_dssp ECSSSCC-EECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCCTTTT---TEEECSSSCCEEETTTSSSCCSSCCS---
T ss_pred EeCCCCC-ccchhhCCChhhhhhccCCCccCccccCccCcccccCCCC---ceEEcCCCCccccccccCCCccCCCC---
Confidence 3556653 5688887422 1122322222101 2477777653332 2333 279999999999975555443
Q ss_pred CCCCCCCCCCC
Q 025846 96 PAGYVCPLCST 106 (247)
Q Consensus 96 Pagy~CP~Cr~ 106 (247)
....||.|..
T Consensus 98 -g~W~C~~C~~ 107 (114)
T 2kwj_A 98 -GSWSCHLCWE 107 (114)
T ss_dssp -SCCCCHHHHH
T ss_pred -CCeECccccc
Confidence 2567888843
No 148
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.27 E-value=7.2 Score=26.61 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=23.6
Q ss_pred cccccceeeeeccCccCcccccCCCCceee
Q 025846 7 RKATKLYCFVHKVPVCGECICFPEHQICVV 36 (247)
Q Consensus 7 rk~T~~fCf~HrvnVCe~Ci~~~~H~~CvV 36 (247)
++.-++||-+.+..||..|....+|..-.+
T Consensus 21 ~e~L~lfC~~d~~~iC~~C~~s~eH~~H~~ 50 (59)
T 2yrg_A 21 GEKLLLFCQEDGKVICWLCERSQEHRGHHT 50 (59)
T ss_dssp CCBCCEEETTTCSEECHHHHTSTTTTTCCE
T ss_pred CceeeeecCCCCcEEecccCCCCcCCCCcE
Confidence 567889999999999999986567754433
No 149
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=36.53 E-value=17 Score=24.30 Aligned_cols=41 Identities=17% Similarity=0.446 Sum_probs=29.1
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
..|..|.+.+..++ .+++ .=+.+||.+|+ +|-.|+++|...
T Consensus 12 ~~C~~C~~~i~~~e--~~~~-~~~~~~H~~CF----------------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 12 ATCERCKGGFAPAE--KIVN-SNGELYHEQCF----------------VCAQCFQQFPEG 52 (72)
T ss_dssp CBCTTTCCBCCTTC--EEEE-ETTEEEETTTS----------------SCTTTCCCCGGG
T ss_pred ccchhcCccccCCc--eEEE-eCcCeeCcCCC----------------cccCCCCCCCCC
Confidence 78999999987653 3333 34567887775 488998887653
No 150
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=35.22 E-value=29 Score=26.29 Aligned_cols=49 Identities=12% Similarity=0.057 Sum_probs=29.5
Q ss_pred Cccccccccccc-cccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 52 PKCCQCQAVLEE-ESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 52 ~~C~ICle~L~~-gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
-.|..|...|.+ +. .-...=+.+|-..|..+.+.... .|-.|..+|.+.
T Consensus 33 F~C~~C~~~L~~~~~---~~~~~~g~~yC~~cy~~~f~~~~--------~C~~C~~~I~~~ 82 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGT---SSYTKSGMILCRNDYIRLFGNSG--------AGGSGGHMGSGG 82 (122)
T ss_dssp HCCSSSCCCTTTSEE---CCEEETTEEECHHHHHHHHCCCC--------SSSCSSCCSCCE
T ss_pred CCcCCCCCcccccCC---eEEEECCeeecHHHHHHHcCCCC--------ccccCCCCcCch
Confidence 467777778752 21 11223345667777777664311 399999998863
No 151
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.10 E-value=20 Score=24.08 Aligned_cols=38 Identities=21% Similarity=0.522 Sum_probs=24.5
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P 110 (247)
+.|..|.+.+.. +.++ .-+..||.+| |+|-.|+++|..
T Consensus 6 ~~C~~C~~~I~~----~~~~-a~~~~~H~~C----------------F~C~~C~~~L~~ 43 (70)
T 2d8z_A 6 SGCVQCKKPITT----GGVT-YREQPWHKEC----------------FVCTACRKQLSG 43 (70)
T ss_dssp CBCSSSCCBCCS----SEEE-SSSSEEETTT----------------SBCSSSCCBCTT
T ss_pred CCCcccCCeecc----ceEE-ECccccCCCC----------------CccCCCCCcCCc
Confidence 678888888853 2222 2356777665 348888887743
No 152
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.53 E-value=33 Score=23.62 Aligned_cols=39 Identities=31% Similarity=0.605 Sum_probs=25.8
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
+.|+.|.+.+.+. .+..+ +..||.+| |+|-.|+++|...
T Consensus 16 ~~C~~C~~~I~~~---~v~a~--~~~~H~~C----------------F~C~~C~~~L~~~ 54 (80)
T 1x3h_A 16 PKCGGCNRPVLEN---YLSAM--DTVWHPEC----------------FVCGDCFTSFSTG 54 (80)
T ss_dssp CBCTTTCCBCCSS---CEEET--TEEECTTT----------------CBCSSSCCBSCSS
T ss_pred CccccCCCeecce---eEEEC--CCeEecCc----------------CChhhCCCCCCCC
Confidence 6788998888642 33333 45677665 3588888887653
No 153
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=33.17 E-value=4.6 Score=27.12 Aligned_cols=47 Identities=19% Similarity=0.425 Sum_probs=29.7
Q ss_pred ccccccccccccccCCeEE-e-cCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 025846 53 KCCQCQAVLEEESGSETTR-L-GCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCS 105 (247)
Q Consensus 53 ~C~ICle~L~~gD~~evvR-L-~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr 105 (247)
.|.+|..+..+++ .-+. - .|..=||..|+.--.... .+..|.||.|+
T Consensus 4 ~cc~C~~p~~~~~--~mI~Cd~~C~~WfH~~Cvgl~~~~~----~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKV--DWVQCDGGCDEWFHQVCVGVSPEMA----ENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTC--CEEECTTTTCCEEETTTTTCCHHHH----HHSCCCCSCC-
T ss_pred cCCCCcCccCCCC--cEEEeCCCCCccCcccccCCCcccc----CCCCEECCCCC
Confidence 4788988875442 3444 2 588899999986432210 01468899995
No 154
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=33.05 E-value=11 Score=23.10 Aligned_cols=12 Identities=25% Similarity=0.897 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCc
Q 025846 97 AGYVCPLCSTTI 108 (247)
Q Consensus 97 agy~CP~Cr~~I 108 (247)
+.+.||+|+..+
T Consensus 2 ~k~~CpvCk~q~ 13 (28)
T 2jvx_A 2 SDFCCPKCQYQA 13 (28)
T ss_dssp CCEECTTSSCEE
T ss_pred CcccCccccccC
Confidence 457899998754
No 155
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=32.34 E-value=35 Score=31.97 Aligned_cols=50 Identities=18% Similarity=0.404 Sum_probs=36.3
Q ss_pred CccccccccccccccCCeEE-ecCCCc--cCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCC
Q 025846 52 PKCCQCQAVLEEESGSETTR-LGCLHV--IHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPK 112 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~Hv--FH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~~ 112 (247)
-.|++=...|.. .+| ..|.|+ |-.+=+-.+..+.+ ...||+|.+.+-+.+
T Consensus 216 L~CPlS~~ri~~-----P~Rg~~C~HlqCFDl~sfL~~~~~~~------~W~CPiC~k~~~~~d 268 (360)
T 4fo9_A 216 LMCPLGKMRLTI-----PCRAVTCTHLQCFDAALYLQMNEKKP------TWICPVCDKKAAYES 268 (360)
T ss_dssp SBCTTTCSBCSS-----EEEETTCCCCCCEEHHHHHHHHHHSC------CCBCTTTCSBCCGGG
T ss_pred eeCCCccceecc-----CCcCCCCCCCccCCHHHHHHHHhhCC------CeECCCCCcccCHHH
Confidence 468877777643 566 589998 88777777666542 468999999887753
No 156
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=31.74 E-value=17 Score=26.28 Aligned_cols=29 Identities=24% Similarity=0.466 Sum_probs=20.8
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHH
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCL 83 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CL 83 (247)
+.|..|.+.+..++ .+++ .=+..||.+|+
T Consensus 67 ~~C~~C~~~I~~~~--~~~~-a~~~~~H~~CF 95 (101)
T 2cup_A 67 PKCKGCFKAIVAGD--QNVE-YKGTVWHKDCF 95 (101)
T ss_dssp CBCSSSCCBCCSSS--CEEE-SSSCEEETTTC
T ss_pred CccccCCCccccCC--eEEE-eCCcchHHhCC
Confidence 89999999998764 3444 33678887663
No 157
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.45 E-value=27 Score=23.42 Aligned_cols=37 Identities=24% Similarity=0.580 Sum_probs=23.2
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~ 109 (247)
+.|..|.+.+.. . .+..+ +..||.+|+ +|-.|+++|.
T Consensus 6 ~~C~~C~~~I~~-~--~~~a~--~~~~H~~CF----------------~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITS-G--GITYQ--DQPWHADCF----------------VCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCT-T--CEEET--TEEECTTTT----------------BCTTTCCBCT
T ss_pred CCCcccCCEeCc-c--eEEEC--ccccccCcC----------------EECCCCCCCC
Confidence 678888888753 1 23222 456776653 4888887775
No 158
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.22 E-value=31 Score=24.17 Aligned_cols=38 Identities=18% Similarity=0.404 Sum_probs=24.4
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P 110 (247)
+.|..|.+.+. +. .+. .-+..||.+| |+|-.|+++|..
T Consensus 16 ~~C~~C~~~I~-~~--~v~--a~~~~~H~~C----------------F~C~~C~~~L~~ 53 (79)
T 2cor_A 16 YICQKCHAIID-EQ--PLI--FKNDPYHPDH----------------FNCANCGKELTA 53 (79)
T ss_dssp CBCTTTCCBCC-SC--CCC--CSSSCCCTTT----------------SBCSSSCCBCCT
T ss_pred CCCccCCCEec-ce--EEE--ECcceeCCCC----------------CEeCCCCCccCC
Confidence 67888888876 21 222 2355677655 358888887764
No 159
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=30.41 E-value=17 Score=29.47 Aligned_cols=41 Identities=24% Similarity=0.526 Sum_probs=29.4
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
+.|..|.+.+..++ .+...=+..||.+|+ +|-.|+++|.+.
T Consensus 120 ~kC~~C~~~I~~~~---~v~~a~~~~~H~~CF----------------~C~~C~~~L~~g 160 (182)
T 2jtn_A 120 TKCAACQLGIPPTQ---VVRRAQDFVYHLHCF----------------ACVVCKRQLATG 160 (182)
T ss_dssp CCCTTTCCCCCSSC---CCCEETTEECCTTTC----------------CCTTTCCCCCTT
T ss_pred cccccCCCccCCCc---eEEecCCCCEEeCCC----------------cCCCCCCCCCCC
Confidence 78999999987643 332234678888774 499999988653
No 160
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=30.28 E-value=28 Score=25.38 Aligned_cols=41 Identities=22% Similarity=0.435 Sum_probs=30.0
Q ss_pred cccccccCCCCCCCccccccccccccccCCeEE---ecCCCccCHHHHHHH
Q 025846 39 YSEWVIDGEYDWPPKCCQCQAVLEEESGSETTR---LGCLHVIHTSCLVSH 86 (247)
Q Consensus 39 YlqWL~Dsdyd~~~~C~ICle~L~~gD~~evvR---L~C~HvFH~~CLd~W 86 (247)
-..|+.|.+-. .|.+|...|.-- ..| -.||++|=..|....
T Consensus 12 ~~~W~pd~~~~---~C~~C~~~Fs~~----~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 12 KGYWQEDEDAP---ACNGCGCVFTTT----VRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CSCCCCTTTCC---BCTTTCCBCCTT----SCCEECTTTCCEECTGGGCCE
T ss_pred CCccccCCCCC---CCcCcCCccccc----hhcccccCCCcEEChHHhCCe
Confidence 45799887654 899999998542 222 379999988887654
No 161
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.99 E-value=32 Score=24.52 Aligned_cols=38 Identities=21% Similarity=0.413 Sum_probs=27.0
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P 110 (247)
+.|+.|.+.+.. +.+. .-+..||.+|+ +|-.|+++|..
T Consensus 26 ~~C~~C~~~I~~----~~v~-a~~~~~H~~CF----------------~C~~C~~~L~~ 63 (90)
T 2dar_A 26 PMCAHCNQVIRG----PFLV-ALGKSWHPEEF----------------NCAHCKNTMAY 63 (90)
T ss_dssp CBBSSSCCBCCS----CEEE-ETTEEECTTTC----------------BCSSSCCBCSS
T ss_pred CCCccCCCEecc----eEEE-ECCccccccCC----------------ccCCCCCCCCC
Confidence 789999999842 3333 33678887763 59999988864
No 162
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=29.58 E-value=27 Score=25.32 Aligned_cols=40 Identities=23% Similarity=0.594 Sum_probs=26.3
Q ss_pred ccccccCCCCCCCccccccccccccccCCeEE---ecCCCccCHHHHHHH
Q 025846 40 SEWVIDGEYDWPPKCCQCQAVLEEESGSETTR---LGCLHVIHTSCLVSH 86 (247)
Q Consensus 40 lqWL~Dsdyd~~~~C~ICle~L~~gD~~evvR---L~C~HvFH~~CLd~W 86 (247)
..|+.|.+-. .|.+|...|.-. ..| -.||.+|=..|....
T Consensus 11 ~~W~~d~~~~---~C~~C~~~Fs~~----~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 11 HAWLKDDEAT---HCRQCEKEFSIS----RRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp ----CCCCCC---BCTTTCCBCBTT----BCCEECTTTCCEECSGGGCEE
T ss_pred CccccCccCC---cccCcCCcccCc----cccccCCCCCCEEChHHhCCe
Confidence 4688877544 799999998642 222 379999999887654
No 163
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=29.33 E-value=29 Score=24.68 Aligned_cols=52 Identities=25% Similarity=0.428 Sum_probs=33.1
Q ss_pred CccccccccccccccCCeEE-ecCCCccCHHHHHHHHhcCCCCCC--CCCCCCCCCCCCccC
Q 025846 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTA--PAGYVCPLCSTTIWP 110 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTA--Pagy~CP~Cr~~I~P 110 (247)
..--||..+...+. ..+. -.|.-=||..|+.-- ...+ ...|.||.|+...-+
T Consensus 10 ~~yCiC~~~~~~~~--~MI~Cd~C~~WfH~~Cvg~~-----~~~~~~~~~~~C~~C~~~~~~ 64 (75)
T 3kqi_A 10 PVYCVCRLPYDVTR--FMIECDACKDWFHGSCVGVE-----EEEAPDIDIYHCPNCEKTHGK 64 (75)
T ss_dssp CEETTTTEECCTTS--CEEECTTTCCEEEHHHHTCC-----TTTGGGBSSCCCHHHHHHHCC
T ss_pred eeEEECCCcCCCCC--CEEEcCCCCCCEeccccccc-----ccccCCCCEEECCCCcccCCC
Confidence 44558988764332 3444 379999999999532 1122 257999999765544
No 164
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=29.19 E-value=7.9 Score=25.86 Aligned_cols=47 Identities=23% Similarity=0.470 Sum_probs=30.8
Q ss_pred CccccccccccccccCCeEE-ecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 025846 52 PKCCQCQAVLEEESGSETTR-LGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCST 106 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvR-L~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~ 106 (247)
..=-||..+...+ ..+. -.|..=||..|+.--.. .+|..|.||.|+.
T Consensus 4 ~~~C~C~~~~~~~---~MI~Cd~C~~W~H~~Cvgi~~~-----~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 4 LVTCFCMKPFAGR---PMIECNECHTWIHLSCAKIRKS-----NVPEVFVCQKCRD 51 (52)
T ss_dssp CBCSTTCCBCTTC---CEEECTTTCCEEETTTTTCCGG-----GCCSSCCCHHHHT
T ss_pred CeEEEeCCcCCCC---CEEEcCCCCccccccccCCCcc-----cCCCcEECcCCCC
Confidence 3344787764422 3444 37999999999963322 2457899999965
No 165
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=28.92 E-value=39 Score=25.28 Aligned_cols=47 Identities=23% Similarity=0.414 Sum_probs=28.2
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPK 112 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~~ 112 (247)
-.|..|...|... .-...=+.+|...|..+.+.. +|..|.++|.+.+
T Consensus 31 F~C~~C~~~L~~~----~f~~~~g~~yC~~cy~~~~~~----------~C~~C~~~I~~~~ 77 (126)
T 2xqn_T 31 FCCFDCDSILAGE----IYVMVNDKPVCKPCYVKNHAV----------VCQGCHNAIDPEV 77 (126)
T ss_dssp SBCTTTCCBCTTS----EEEEETTEEEEHHHHHHHSCC----------BCTTTCSBCCTTS
T ss_pred CCcCCCCCCCCcC----EEEeECCEEechHHhCcCcCc----------cCcccCCcCCcCc
Confidence 4577777777532 222233456667776654432 4888888888743
No 166
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.00 E-value=36 Score=22.82 Aligned_cols=39 Identities=21% Similarity=0.490 Sum_probs=24.0
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
+.|..|.+.+.+ . .+..+ +..||.+|+ +|-.|+++|...
T Consensus 6 ~~C~~C~~~I~~-~--~~~a~--~~~~H~~CF----------------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 6 SGCHQCGEFIIG-R--VIKAM--NNSWHPECF----------------RCDLCQEVLADI 44 (70)
T ss_dssp SBCSSSCCBCCS-C--CEEET--TEEECTTTS----------------BCSSSCCBCSSS
T ss_pred CcCccCCCEecc-e--EEEEC--cccccccCC----------------EeCCCCCcCCCC
Confidence 578888888752 1 22222 456776663 488888777653
No 167
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.89 E-value=28 Score=25.26 Aligned_cols=40 Identities=18% Similarity=0.362 Sum_probs=28.5
Q ss_pred ccccccCCCCCCCccccccccccccccCCeEE---ecCCCccCHHHHHHH
Q 025846 40 SEWVIDGEYDWPPKCCQCQAVLEEESGSETTR---LGCLHVIHTSCLVSH 86 (247)
Q Consensus 40 lqWL~Dsdyd~~~~C~ICle~L~~gD~~evvR---L~C~HvFH~~CLd~W 86 (247)
..|+.|.+-. .|.+|...|.-- ..| -.||.+|=..|....
T Consensus 6 ~~W~pd~~~~---~C~~C~~~F~~~----~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 6 SGRYPTNNFG---NCTGCSATFSVL----KKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CCSCSCCCCS---SCSSSCCCCCSS----SCCEECSSSCCEECTTTSCEE
T ss_pred CccccCCCCC---cCcCcCCccccc----hhhhhhcCCCcEEChhhcCCc
Confidence 4799887544 799999998431 222 379999988886544
No 168
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=27.61 E-value=25 Score=26.04 Aligned_cols=41 Identities=29% Similarity=0.575 Sum_probs=28.9
Q ss_pred ccccccCCCCCCCccccccccccccccCCeEE---ecCCCccCHHHHHHHH
Q 025846 40 SEWVIDGEYDWPPKCCQCQAVLEEESGSETTR---LGCLHVIHTSCLVSHI 87 (247)
Q Consensus 40 lqWL~Dsdyd~~~~C~ICle~L~~gD~~evvR---L~C~HvFH~~CLd~WL 87 (247)
..|+.|.+- ..|.+|...|.-- ..+ ..||++|=..|...++
T Consensus 12 p~W~~d~~~---~~C~~C~~~F~~~----~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 12 PTWVPDSEA---PNCMNCQVKFTFT----KRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CCCCCGGGC---CBCTTTCCBCCSS----SCCEECTTTCCEECGGGSCEEE
T ss_pred CcCcccccC---CcCcCCCCcccch----hhCccccCCCCEECCcccCCee
Confidence 368877654 3799999998642 222 3799999888876654
No 169
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.58 E-value=34 Score=23.71 Aligned_cols=38 Identities=26% Similarity=0.731 Sum_probs=24.3
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P 110 (247)
+.|+.|.+.+. + +.++ .-+.+||.+| |+|-.|+++|..
T Consensus 16 ~~C~~C~~~I~-~---~~v~-a~~~~wH~~C----------------F~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIE-G---EVVS-ALGKTYHPDC----------------FVCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCC-S---CCEE-ETTEEECTTT----------------SSCSSSCCCCCS
T ss_pred CcCccccCEec-c---ceEE-ECCceeCccC----------------CccccCCCCCCC
Confidence 67888888876 2 2333 2356777665 347778777654
No 170
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.46 E-value=32 Score=24.53 Aligned_cols=40 Identities=25% Similarity=0.569 Sum_probs=28.6
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
..|..|.+.+..++ .+ ..-+.+||.+|+ +|-.|.++|...
T Consensus 16 ~~C~~C~~~I~~~~---~v-~a~~~~~H~~CF----------------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 16 ETCVECQKTVYPME---RL-LANQQVFHISCF----------------RCSYCNNKLSLG 55 (91)
T ss_dssp CBCTTTCCBCCTTS---EE-ECSSSEEETTTC----------------BCTTTCCBCCTT
T ss_pred CcCccCCCccCCce---eE-EECCCEECCCCC----------------eeCCCCCCCCCC
Confidence 68999999987653 33 345678887763 488888887653
No 171
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=27.20 E-value=25 Score=23.57 Aligned_cols=39 Identities=23% Similarity=0.600 Sum_probs=27.7
Q ss_pred CccccccccccccccCCeEEecCCCccC--HHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIH--TSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH--~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~ 109 (247)
+.|+.|.+.+..++ +.++. -+..|| .+| |+|-.|+++|.
T Consensus 3 ~~C~~C~~~I~~~~--~~v~a-~~~~wH~~~~C----------------F~C~~C~~~L~ 43 (65)
T 2iyb_E 3 VVCQGCHNAIDPEV--QRVTY-NNFSWHASTEC----------------FLCSCCSKCLI 43 (65)
T ss_dssp EECTTTSSEECTTS--CEEEE-TTEEEETTTTT----------------SBCTTTCCBCT
T ss_pred CCCcCCCCeeccCc--eEEEE-CCCccCCCCCC----------------EECCCCCCcCC
Confidence 57999999988643 33332 267788 766 35999998875
No 172
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=26.66 E-value=37 Score=22.50 Aligned_cols=38 Identities=21% Similarity=0.509 Sum_probs=26.6
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P 110 (247)
+.|+.|.+.+. + +.+. .=+..||.+| |+|-.|+++|..
T Consensus 6 ~~C~~C~~~I~-~---~~~~-a~~~~~H~~C----------------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-G---RVVN-AMGKQWHVEH----------------FVCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-S---CEEC-CTTSBEETTT----------------CBCTTTCCBCSS
T ss_pred CCCcccCCEec-c---eEEE-ECccccccCc----------------CEECCCCCCCCC
Confidence 78999999987 3 2332 3356788766 359999988864
No 173
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.60 E-value=31 Score=23.98 Aligned_cols=38 Identities=24% Similarity=0.429 Sum_probs=25.8
Q ss_pred CCccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 025846 51 PPKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (247)
Q Consensus 51 ~~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~ 109 (247)
...|..|.+.+.. +.++ .-+.+||.+|+ +|-.|+++|.
T Consensus 15 ~~~C~~C~~~I~~----~~~~-a~~~~~H~~CF----------------~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVG----VFVK-LRDRHRHPECY----------------VCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCS----SCEE-CSSCEECTTTT----------------SCSSSCCCHH
T ss_pred CCccccCCCCccC----cEEE-ECcceeCcCcC----------------eeCCCCCCCC
Confidence 3689999988864 2222 23578887764 4888888774
No 174
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=26.52 E-value=64 Score=33.94 Aligned_cols=69 Identities=13% Similarity=0.002 Sum_probs=46.7
Q ss_pred CccccccccccccccCCeEEecCC-CccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCCCCCCCCcchHHHHHHHHhh
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCL-HVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPPKNVKDSGSRLHSLLKEAIM 130 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~-HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~~~i~d~~S~l~~~Lre~i~ 130 (247)
-.|+|=++-+. +.|.|+-| ++|-++.|.+||.+. -+||.=|.++... .+. .+-.|.+.+.+++.
T Consensus 892 F~cPIs~~lM~-----DPVilpsG~~TydR~~I~~wl~~~--------~tdP~Tr~~L~~~-~li-PN~~Lk~~I~~w~~ 956 (968)
T 3m62_A 892 FLDPLMYTIMK-----DPVILPASKMNIDRSTIKAHLLSD--------STDPFNRMPLKLE-DVT-PNEELRQKILCFKK 956 (968)
T ss_dssp GBCTTTCSBCS-----SEEECTTTCCEEEHHHHHHHHTTC--------CBCTTTCCBCCGG-GCE-ECHHHHHHHHHHHH
T ss_pred hCCcchhhHHh-----CCeEcCCCCEEECHHHHHHHHhcC--------CCCCCCCCCCCcc-ccc-ccHHHHHHHHHHHH
Confidence 45888888774 48999987 699999999999863 2599999888653 221 12344555555554
Q ss_pred hhhhh
Q 025846 131 LTGLE 135 (247)
Q Consensus 131 q~~WA 135 (247)
+..-+
T Consensus 957 ~~~~~ 961 (968)
T 3m62_A 957 QKKEE 961 (968)
T ss_dssp HHHTT
T ss_pred HHHhh
Confidence 44333
No 175
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=26.50 E-value=31 Score=27.51 Aligned_cols=41 Identities=24% Similarity=0.526 Sum_probs=30.6
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
+.|..|.+.+..++ .+...=+..||.+|+ +|-.|+++|...
T Consensus 66 ~~C~~C~~~I~~~~---~v~~a~~~~~H~~CF----------------~C~~C~~~L~~g 106 (169)
T 2rgt_A 66 TKCAACQLGIPPTQ---VVRRAQDFVYHLHCF----------------ACVVCKRQLATG 106 (169)
T ss_dssp CBCTTTCCBCCTTS---EEEEETTEEEEGGGC----------------BCTTTCCBCCTT
T ss_pred ccccccccccCCCc---EEEEcCCceEeeCCC----------------cCCCCCCCCCCC
Confidence 78999999887643 443345788998884 499999988653
No 176
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.82 E-value=45 Score=22.93 Aligned_cols=38 Identities=18% Similarity=0.410 Sum_probs=22.5
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P 110 (247)
+.|+-|.+.+.. . .+. .-+..||.+| |+|-.|+++|.+
T Consensus 6 ~~C~~C~~~I~~-~--~v~--a~~~~wH~~C----------------F~C~~C~~~L~~ 43 (73)
T 1wig_A 6 SGCDSCEKYITG-R--VLE--AGEKHYHPSC----------------ALCVRCGQMFAE 43 (73)
T ss_dssp CSCSSSCCCCSS-C--CBC--CSSCCBCTTT----------------SCCSSSCCCCCS
T ss_pred CCcccCCCEecC-e--eEE--eCCCCCCCCc----------------CEeCCCCCCCCC
Confidence 567777777753 1 222 2346677655 247777777654
No 177
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=24.71 E-value=21 Score=24.81 Aligned_cols=29 Identities=24% Similarity=0.541 Sum_probs=23.6
Q ss_pred cccccceeeeeccCccCcccccCCCCceee
Q 025846 7 RKATKLYCFVHKVPVCGECICFPEHQICVV 36 (247)
Q Consensus 7 rk~T~~fCf~HrvnVCe~Ci~~~~H~~CvV 36 (247)
.+.-++||-+.+..||..|.. .+|..-.+
T Consensus 25 ~e~l~lfC~~d~~~iC~~C~~-~~H~~H~~ 53 (72)
T 2csv_A 25 GKTMELFCQTDQTCICYLCMF-QEHKNHST 53 (72)
T ss_dssp CCBCCEEESSSCCEECHHHHH-TTTSSSCE
T ss_pred CCceEEEeCCCCeEEccccCC-CCCCCCCE
Confidence 457789999999999999986 78865554
No 178
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=23.69 E-value=28 Score=26.56 Aligned_cols=54 Identities=19% Similarity=0.429 Sum_probs=35.5
Q ss_pred CccccccccccccccCCeEEe--cCCCccCHHHHHHH------HhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 52 PKCCQCQAVLEEESGSETTRL--GCLHVIHTSCLVSH------IKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL--~C~HvFH~~CLd~W------L~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
-.|.+|..++.+++ +-+.= .|..=||..|+.-- |...+ ...|.||.|+..--++
T Consensus 4 ~~C~iC~~p~~~~~--~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~----~~~~~Cp~C~~~~~~~ 65 (105)
T 2xb1_A 4 YPCGACRSEVNDDQ--DAILCEASCQKWFHRECTGMTESAYGLLTTEA----SAVWACDLCLKTKEGS 65 (105)
T ss_dssp CBCTTTCSBCCTTS--CEEECTTTTCCEEEGGGTTCCHHHHHHHHHCT----TEEECCHHHHHTTTTC
T ss_pred CCCCCCCCccCCCC--CEEEecCCcccccccccCCcCHHHHHhhccCC----CCCEECccccCcCCCC
Confidence 45999999986543 44443 68999999998422 11111 1468999998765543
No 179
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=23.61 E-value=43 Score=23.72 Aligned_cols=39 Identities=21% Similarity=0.531 Sum_probs=27.5
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
..|..|.+.+.. +.++ .-+.+||.+| |+|-.|+++|...
T Consensus 26 ~~C~~C~~~I~~----~~~~-a~~~~~H~~C----------------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 26 PLCDKCGSGIVG----AVVK-ARDKYRHPEC----------------FVCADCNLNLKQK 64 (89)
T ss_dssp CBCTTTCCBCCS----CCEE-SSSCEECTTT----------------CCCSSSCCCTTTS
T ss_pred CCcccCCCEecc----cEEE-ECCceECccC----------------CEecCCCCCCCCC
Confidence 689999998864 2332 3457888776 3588999888653
No 180
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=23.16 E-value=32 Score=26.52 Aligned_cols=38 Identities=16% Similarity=0.444 Sum_probs=27.9
Q ss_pred CccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc
Q 025846 52 PKCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIW 109 (247)
Q Consensus 52 ~~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~ 109 (247)
+.|+.|.+.+... .+++ .-+..||.+| |+|-.|+++|.
T Consensus 62 ~~C~~C~~~I~~~---~~v~-a~~~~wH~~C----------------F~C~~C~~~L~ 99 (123)
T 2l4z_A 62 KRCAGCGGKIADR---FLLY-AMDSYWHSRC----------------LKCSSCQAQLG 99 (123)
T ss_dssp SBBSSSSSBCCSS---SEEE-ETTEEEETTT----------------SBCTTTCCBGG
T ss_pred CcCcCCCCCcCCc---EEEE-eCCcEEcccc----------------cCcCcCCCccc
Confidence 6899999998753 3333 2466788777 35999999986
No 181
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=22.91 E-value=38 Score=27.54 Aligned_cols=39 Identities=21% Similarity=0.571 Sum_probs=28.0
Q ss_pred ccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccC
Q 025846 53 KCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWP 110 (247)
Q Consensus 53 ~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P 110 (247)
.|..|.+.+...+ .+...-+++||.+| |+|-.|+++|..
T Consensus 71 ~C~~C~~~I~~~e---~~i~a~~~~~H~~C----------------F~C~~C~~~L~~ 109 (188)
T 1rut_X 71 ACSACGQSIPASE---LVMRAQGNVYHLKC----------------FTCSTCRNRLVP 109 (188)
T ss_dssp ECTTTCCEECTTS---EEEEETTEEECGGG----------------CBCTTTCCBCCT
T ss_pred ccccCCCccccCc---EEEEcCCCEEeCCC----------------CeECCCCCCCCC
Confidence 6999999987543 22223468899887 359999988764
No 182
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.36 E-value=6.8 Score=26.61 Aligned_cols=25 Identities=32% Similarity=0.602 Sum_probs=19.9
Q ss_pred cccccceeeeeccCccCcccccCCC
Q 025846 7 RKATKLYCFVHKVPVCGECICFPEH 31 (247)
Q Consensus 7 rk~T~~fCf~HrvnVCe~Ci~~~~H 31 (247)
.+.-++||-+.+..||..|....+|
T Consensus 25 ~e~L~lfC~~d~~~iC~~C~~~~eH 49 (57)
T 2egm_A 25 QEALKLFCEVDEEAICVVCRESRSH 49 (57)
T ss_dssp CCBCCEEETTTTEEECHHHHHSHHH
T ss_pred CceeeEEcCCCCcEEecccCCCCCC
Confidence 5677899999999999999853455
No 183
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=22.35 E-value=70 Score=23.95 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=23.5
Q ss_pred ccccccccccccccCCeEEecCCCccCHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCC
Q 025846 53 KCCQCQAVLEEESGSETTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPLCSTTIWPP 111 (247)
Q Consensus 53 ~C~ICle~L~~gD~~evvRL~C~HvFH~~CLd~WL~~~p~nTAPagy~CP~Cr~~I~P~ 111 (247)
.|..|...|...+ ..-...=+.+|...|..+-+... ..|..|.++|.+.
T Consensus 31 ~C~~C~~~L~~~~--~~~~~~~g~~yC~~~y~~~~~~~--------~~C~~C~~~I~~~ 79 (131)
T 2xjy_A 31 SCDLCGCRLGEVG--RRLYYKLGRKLCRRDYLRLFGQD--------GLCASCDKRIRAY 79 (131)
T ss_dssp BCTTTCCBCSSTT--CCEEEETTEEECHHHHHHHHCCC--------EECTTTCCEECTT
T ss_pred ccCcCCCccccCC--CeEEEECCEEeecCchhhhCCCc--------cChhhcCCccCcc
Confidence 4666666664211 11122223455566665554320 1377777766653
No 184
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=22.03 E-value=36 Score=22.86 Aligned_cols=13 Identities=31% Similarity=1.142 Sum_probs=10.2
Q ss_pred CCCCCCCCCCCCC
Q 025846 95 APAGYVCPLCSTT 107 (247)
Q Consensus 95 APagy~CP~Cr~~ 107 (247)
.|..++||+|..+
T Consensus 27 lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 27 LPDDWCCPVCGVS 39 (46)
T ss_dssp SCTTCBCTTTCCB
T ss_pred CCCCCcCcCCCCc
Confidence 4667899999864
No 185
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=21.86 E-value=16 Score=25.90 Aligned_cols=29 Identities=21% Similarity=0.499 Sum_probs=23.3
Q ss_pred ccccceeeeeccCccCcccccCCCCceee
Q 025846 8 KATKLYCFVHKVPVCGECICFPEHQICVV 36 (247)
Q Consensus 8 k~T~~fCf~HrvnVCe~Ci~~~~H~~CvV 36 (247)
+.-++||-+.+..||..|....+|..-.+
T Consensus 27 e~l~lfC~~d~~~iC~~C~~~~~H~~H~~ 55 (84)
T 2dja_A 27 EKVNMYCVSDDQLICALCKLVGRHRDHQV 55 (84)
T ss_dssp SCCCEEETTTTEEECHHHHHTSTTTTCCB
T ss_pred ccccEEcCCCCceEcccCcCCCCCCCCCc
Confidence 46789999999999999986577765554
No 186
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=21.40 E-value=38 Score=26.60 Aligned_cols=40 Identities=20% Similarity=0.519 Sum_probs=28.5
Q ss_pred ccccccCCCCCCCccccccccccccccCCeEE---ecCCCccCHHHHHHH
Q 025846 40 SEWVIDGEYDWPPKCCQCQAVLEEESGSETTR---LGCLHVIHTSCLVSH 86 (247)
Q Consensus 40 lqWL~Dsdyd~~~~C~ICle~L~~gD~~evvR---L~C~HvFH~~CLd~W 86 (247)
..|+.|.+- ..|.+|...|.-- ..| -.||++|=..|....
T Consensus 61 ~~W~~d~~~---~~C~~C~~~Fs~~----~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 61 RKWAEDNEV---QNCMACGKGFSVT----VRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCCCCGGGC---CBCTTTCCBCCSS----SCCEECTTTCCEECGGGSCEE
T ss_pred CccccCCCC---CCCcCcCCccccc----cccccCCCCCeEEChHHhCCc
Confidence 468877654 3799999998542 222 379999988887654
No 187
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=20.06 E-value=41 Score=23.30 Aligned_cols=12 Identities=50% Similarity=1.353 Sum_probs=9.9
Q ss_pred CCCCCCCCCCCC
Q 025846 96 PAGYVCPLCSTT 107 (247)
Q Consensus 96 Pagy~CP~Cr~~ 107 (247)
|..++||.|..+
T Consensus 34 P~dw~CP~Cg~~ 45 (54)
T 4rxn_A 34 PDDWVCPLCGVG 45 (54)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCcCCCCc
Confidence 678899999874
Done!