BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025847
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F67|A Chain A, Three Dimensional Structure Of The Double Mutant Of
Upf0176 Protein Lpg2838 From Legionella Pneumophila At
The Resolution 1.8a, Northeast Structural Genomics
Consortium (Nesg) Target Lgr82
Length = 265
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 24/142 (16%)
Query: 6 LAPSEWRNKLEAGKDIDKASNSDLNRDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSF 65
L+P EW ++ + + ILLD RN YE+++G F A PD++ FR
Sbjct: 124 LSPEEWHQFIQ-------------DPNVILLDTRNDYEYELGTFKNAINPDIENFREFP- 169
Query: 66 GLSQREAFASDPLADLDKEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYLE 125
QR +DK+ I +CTGGIRC+ + ++ GF ++Y L G+ +YLE
Sbjct: 170 DYVQRNL--------IDKKDKKIAXFCTGGIRCEKTTAYXKELGFEHVYQLHDGILNYLE 221
Query: 126 N--EGPVEWVGNLFVFDSRLSL 145
+ E W G FVFD R+++
Sbjct: 222 SIPESESLWEGKCFVFDDRVAV 243
>pdb|1QXN|A Chain A, Solution Structure Of The 30 Kda Polysulfide-Sulfur
Transferase Homodimer From Wolinella Succinogenes
pdb|1QXN|B Chain B, Solution Structure Of The 30 Kda Polysulfide-Sulfur
Transferase Homodimer From Wolinella Succinogenes
Length = 137
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 16/103 (15%)
Query: 30 NRDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPL---ADLDKEKT 86
N D L+DVR D +PDV ++ S G +PL + LD EK
Sbjct: 37 NPDITLIDVR-----DPDELKAMGKPDVKNYKHMSRG-------KLEPLLAKSGLDPEKP 84
Query: 87 DILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYLENEGP 129
++++C R + LR+ GF +Y +GG+ +LE P
Sbjct: 85 -VVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLP 126
>pdb|3R2U|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|C Chain C, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|D Chain D, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
Length = 466
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 21/88 (23%)
Query: 35 LLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPL--ADLDKEKTDIL-MY 91
+LDVRN EW+ GH LSQ L DL K D++ ++
Sbjct: 390 ILDVRNDNEWNNGH------------------LSQAVHVPHGKLLETDLPFNKNDVIYVH 431
Query: 92 CTGGIRCDVYSTILRQRGFHNLYTLKGG 119
C GIR + IL +G+HN+ + G
Sbjct: 432 CQSGIRSSIAIGILEHKGYHNIINVNEG 459
>pdb|3ILM|A Chain A, Crystal Structure Of The Alr3790 Protein From Anabaena Sp.
Northeast Structural Genomics Consortium Target Nsr437h
pdb|3ILM|B Chain B, Crystal Structure Of The Alr3790 Protein From Anabaena Sp.
Northeast Structural Genomics Consortium Target Nsr437h
pdb|3ILM|C Chain C, Crystal Structure Of The Alr3790 Protein From Anabaena Sp.
Northeast Structural Genomics Consortium Target Nsr437h
pdb|3ILM|D Chain D, Crystal Structure Of The Alr3790 Protein From Anabaena Sp.
Northeast Structural Genomics Consortium Target Nsr437h
Length = 141
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 14/101 (13%)
Query: 33 FILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLDKEKTDILMYC 92
F +LDVR+ ++ GH GA + E + L+K + DI +Y
Sbjct: 18 FTILDVRDRSTYNDGHIXGAXAXPI-------------EDLVDRASSSLEKSR-DIYVYG 63
Query: 93 TGGIRCDVYSTILRQRGFHNLYTLKGGVSHYLENEGPVEWV 133
G + +LR GF ++ LKGG++ + GP E +
Sbjct: 64 AGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTEGI 104
>pdb|3K9R|A Chain A, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c.
pdb|3K9R|B Chain B, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c.
pdb|3K9R|C Chain C, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c.
pdb|3K9R|D Chain D, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c
Length = 115
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 16/100 (16%)
Query: 33 FILLDVRNGYEWDIGHFHGAR-RPDVDCFRSTSFGLSQREAFASDPLADLDKEKTDILMY 91
F +LDVR+ ++ GH GA P D S L ++ DI +Y
Sbjct: 23 FTILDVRDRSTYNDGHIXGAXAXPIEDLVDRASSSL---------------EKSRDIYVY 67
Query: 92 CTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYLENEGPVE 131
G + +LR GF ++ LKGG++ + GP E
Sbjct: 68 GAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE 107
>pdb|2KL3|A Chain A, Solution Nmr Structure Of The Rhodanese-Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437a
Length = 132
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 16/102 (15%)
Query: 33 FILLDVRNGYEWDIGHFHGAR-RPDVDCFRSTSFGLSQREAFASDPLADLDKEKTDILMY 91
F +LDVR+ ++ GH GA P D S L ++ DI +Y
Sbjct: 21 FTILDVRDRSTYNDGHIMGAMAMPIEDLVDRASSSL---------------EKSRDIYVY 65
Query: 92 CTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYLENEGPVEWV 133
G + +LR GF ++ LKGG++ + GP E +
Sbjct: 66 GAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTEGI 107
>pdb|3HIX|A Chain A, Crystal Structure Of The Rhodanese_3 Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437i
pdb|3HIX|B Chain B, Crystal Structure Of The Rhodanese_3 Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437i
pdb|3HIX|C Chain C, Crystal Structure Of The Rhodanese_3 Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437i
Length = 106
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 14/99 (14%)
Query: 33 FILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLDKEKTDILMYC 92
F +LDVR+ ++ GH GA + E + L+K + DI +Y
Sbjct: 14 FTILDVRDRSTYNDGHIXGAXAXPI-------------EDLVDRASSSLEKSR-DIYVYG 59
Query: 93 TGGIRCDVYSTILRQRGFHNLYTLKGGVSHYLENEGPVE 131
G + +LR GF ++ LKGG++ + GP E
Sbjct: 60 AGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE 98
>pdb|2HHG|A Chain A, Structure Of Protein Of Unknown Function Rpa3614, Possible
Tyrosine Phosphatase, From Rhodopseudomonas Palustris
Cga009
Length = 139
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Query: 32 DFILLDVRNGYEWD-IGHFHGARRPDVDCFRST-SFGLSQREAFASDPLADLDKEKTDIL 89
D +++D+R+ E + G G+ C R F + + +A P+ DK+ +
Sbjct: 39 DVVIVDIRDPREIERDGKIPGS----FSCTRGXLEFWIDPQSPYAK-PIFQEDKK---FV 90
Query: 90 MYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYLENEGPVE 131
YC GG+R + + + G + ++GG + + GP+E
Sbjct: 91 FYCAGGLRSALAAKTAQDXGLKPVAHIEGGFGAWRDAGGPIE 132
>pdb|3TP9|A Chain A, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
pdb|3TP9|B Chain B, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
Length = 474
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 42/110 (38%), Gaps = 15/110 (13%)
Query: 22 DKASNSDLNRDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADL 81
D+ + + LLDVRN EW GH A LS+ A D D
Sbjct: 379 DEVRGALAQQGLWLLDVRNVDEWAGGHLPQAHH----------IPLSKLAAHIHDVPRD- 427
Query: 82 DKEKTDILMYCTGGIRCDVYSTILRQRGFHNLYTLKGGVSHYLENEGPVE 131
+ +YC G R + +++LR G ++ GG + PVE
Sbjct: 428 ----GSVCVYCRTGGRSAIAASLLRAHGVGDVRNXVGGYEAWRGKGFPVE 473
>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
pdb|3NTA|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
Length = 574
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 15/83 (18%)
Query: 28 DLNRDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLDKEKTD 87
+L+ D +LLDVRN E G GA VD R D +L K+K +
Sbjct: 482 NLSEDQLLLDVRNPGELQNGGLEGAVNIPVDELR--------------DRXHELPKDK-E 526
Query: 88 ILMYCTGGIRCDVYSTILRQRGF 110
I+++C G+R +V L G+
Sbjct: 527 IIIFCQVGLRGNVAYRQLVNNGY 549
>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
pdb|3NTD|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
Length = 565
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 15/83 (18%)
Query: 28 DLNRDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLDKEKTD 87
+L+ D +LLDVRN E G GA VD R D + +L K+K +
Sbjct: 482 NLSEDQLLLDVRNPGELQNGGLEGAVNIPVDELR--------------DRMHELPKDK-E 526
Query: 88 ILMYCTGGIRCDVYSTILRQRGF 110
I+++ G+R +V L G+
Sbjct: 527 IIIFSQVGLRGNVAYRQLVNNGY 549
>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
pdb|3NT6|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
Length = 574
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 15/83 (18%)
Query: 28 DLNRDFILLDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLDKEKTD 87
+L+ D +LLDVRN E G GA VD R D +L K+K +
Sbjct: 482 NLSEDQLLLDVRNPGELQNGGLEGAVNIPVDELR--------------DRXHELPKDK-E 526
Query: 88 ILMYCTGGIRCDVYSTILRQRGF 110
I+++ G+R +V L G+
Sbjct: 527 IIIFSQVGLRGNVAYRQLVNNGY 549
>pdb|1TQ1|A Chain A, Solution Structure Of At5g66040, A Putative Protein From
Arabidosis Thaliana
Length = 129
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 36 LDVRNGYEWDIGHFHGARRPDVDCFRSTSFGLSQREAFASDPLADLDKEKTDILMYCTGG 95
LDVR E+ GH GA +V + G+S+ F + ++ + +I++ C G
Sbjct: 36 LDVRTPEEFSQGHACGA--INVPYMNRGASGMSKNTDFL-EQVSSHFGQSDNIIVGCQSG 92
Query: 96 IRCDVYSTILRQRGFHNLYTLKGGVSHYLENEGPVE 131
R +T L GF + + GG S + +N P +
Sbjct: 93 GRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK 128
>pdb|1C25|A Chain A, Human Cdc25a Catalytic Domain
Length = 161
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 27 SDLNRDFILLDVRNGYEWDIGHFHGA 52
++L ++F+++D R YE++ GH GA
Sbjct: 39 ANLIKEFVIIDCRYPYEYEGGHIKGA 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,886,347
Number of Sequences: 62578
Number of extensions: 323241
Number of successful extensions: 501
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 483
Number of HSP's gapped (non-prelim): 19
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)