BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025848
         (247 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2I5Z|O Chain O, The Crystal Structure Of Ospa Mutant
          Length = 251

 Score = 29.3 bits (64), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 15/60 (25%), Positives = 31/60 (51%)

Query: 40  VVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSGVSASSCDGTDQSLEGWISE 99
           +V   + S +  S   K+NE+GE  E+++  A     E++G+ +       + L+G++ E
Sbjct: 87  LVSKKVTSKDKSSTEEKANEKGEVSEKIITRADGTRLEYTGIKSDGSGKAKEVLKGYVLE 146


>pdb|2PI3|O Chain O, The Crystal Structure Of Ospa Mutant
          Length = 251

 Score = 29.3 bits (64), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 15/55 (27%), Positives = 28/55 (50%)

Query: 45  LCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSGVSASSCDGTDQSLEGWISE 99
           + S +  S F K NE+GE  E+ +  A     E++G+ +       + L+G++ E
Sbjct: 92  VTSKDKSSTFEKFNEKGEVSEKFITRADGTRLEYTGIKSDGSGKAKEVLKGYVLE 146


>pdb|2OY8|A Chain A, The Crystal Structure Of Ospa Mutant
          Length = 320

 Score = 28.5 bits (62), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 13/49 (26%), Positives = 26/49 (53%)

Query: 51  PSPFLKSNERGESVEEVLPEASQWTTEFSGVSASSCDGTDQSLEGWISE 99
            S + K NE+GE  E+++  A     E++G+ +       + L+G++ E
Sbjct: 167 SSTYEKFNEKGEVSEKIITRADGTRLEYTGIKSDGSGKAKEVLKGYVLE 215


>pdb|1OSP|O Chain O, Crystal Structure Of Outer Surface Protein A Of Borrelia
           Burgdorferi Complexed With A Murine Monoclonal Antibody
           Fab
 pdb|1FJ1|E Chain E, Lyme Disease Antigen Ospa In Complex With Neutralizing
           Antibody Fab La-2
 pdb|1FJ1|F Chain F, Lyme Disease Antigen Ospa In Complex With Neutralizing
           Antibody Fab La-2
          Length = 257

 Score = 28.1 bits (61), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 15/60 (25%), Positives = 30/60 (50%)

Query: 40  VVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSGVSASSCDGTDQSLEGWISE 99
           +V   + S +  S   K NE+GE  E+++  A     E++G+ +       + L+G++ E
Sbjct: 93  LVSKKVTSKDKSSTEEKFNEKGEVSEKIITRADGTRLEYTGIKSDGSGKAKEVLKGYVLE 152


>pdb|2OYB|O Chain O, The Crystal Structure Of Ospa Mutant
          Length = 251

 Score = 28.1 bits (61), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 15/60 (25%), Positives = 30/60 (50%)

Query: 40  VVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSGVSASSCDGTDQSLEGWISE 99
           +V   + S +  S + K NE+GE  E+ +  A     E++G+ +       + L+G++ E
Sbjct: 87  LVSKYVTSKDKSSTYEKFNEKGEVSEKYITRADGTRLEYTGIKSDGSGKAKEVLKGYVLE 146


>pdb|2G8C|O Chain O, Atomic-Resolution Crystal Structure Of Borrelia
           Burgdorferi Ospa Via Surface Entropy Reduction
          Length = 251

 Score = 27.3 bits (59), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 15/60 (25%), Positives = 30/60 (50%)

Query: 40  VVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFSGVSASSCDGTDQSLEGWISE 99
           +V   + S +  S   K NE+GE  E+++  A     E++G+ +       + L+G++ E
Sbjct: 87  LVSKKVTSKDKSSTEEKFNEKGEVSEKIITRADGTRLEYTGIKSDGSGKAKEVLKGYVLE 146


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.131    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,412,299
Number of Sequences: 62578
Number of extensions: 289650
Number of successful extensions: 640
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 614
Number of HSP's gapped (non-prelim): 26
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)