BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025848
         (247 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6NLW5|XRI1_ARATH Protein XRI1 OS=Arabidopsis thaliana GN=XRI1 PE=1 SV=2
          Length = 300

 Score =  220 bits (561), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 122/226 (53%), Positives = 158/226 (69%), Gaps = 6/226 (2%)

Query: 23  ETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVEEVLPEASQWTTEFS-GV 81
           ET S +KRRRMLQF+ Q  ++SL S E  S  LKS+ R ++ +E+LPE SQ    FS   
Sbjct: 80  ETRSALKRRRMLQFEDQP-ETSLFSSESFSAILKSSARDDTFDELLPEGSQLIEGFSEDA 138

Query: 82  SASSCDGTDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQIDISEFSNSPPAYDDAN 141
           SASS +G D   E W ++CLND E     D+L  +F G+ D+Q+DISE+ N PP  +   
Sbjct: 139 SASSFEGLDLYAEEWYADCLNDAETPMLPDDL--NF-GSPDVQVDISEYLNVPPETETRE 195

Query: 142 ILQQHCTKTPHNVVFRGRKSLIRTPTKLASSVAYPFAFIKPCGVHGDITLKDINQRIHSP 201
           + Q+  T++  NV+F+GRKS  R  +KL SS+ YPFAFIKPCGVHG +TLKDINQ+I +P
Sbjct: 196 V-QRPVTRSSPNVIFKGRKSFSRPVSKLPSSIIYPFAFIKPCGVHGGMTLKDINQKIRNP 254

Query: 202 ASTLRQNTEDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 247
            +  + + E+P+    SAFSGKPVVGKTKIRTEGGKGSITIMRT+G
Sbjct: 255 PAKPKAHIEEPAVIQTSAFSGKPVVGKTKIRTEGGKGSITIMRTRG 300


>sp|Q923B6|STEA4_MOUSE Metalloreductase STEAP4 OS=Mus musculus GN=Steap4 PE=2 SV=1
          Length = 470

 Score = 35.0 bits (79), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 9/78 (11%)

Query: 150 TPHNVVFRGRKSLIRTPTKLASSV--AYPFAFIKPCGVHGDITLKDINQR--IHSPASTL 205
           T H +V+ G++ L  +P+ L  S+  AY  A + PC V   + LK I     I    + +
Sbjct: 395 TAHTLVYGGKRFL--SPSILRWSLPSAYILALVIPCAV---LVLKCILIMPCIDKTLTRI 449

Query: 206 RQNTEDPSAYPKSAFSGK 223
           RQ  E  S Y +SA +GK
Sbjct: 450 RQGWERNSKYTQSALNGK 467


>sp|B6YQF6|SYE_AZOPC Glutamate--tRNA ligase OS=Azobacteroides pseudotrichonymphae
           genomovar. CFP2 GN=gltX PE=3 SV=1
          Length = 494

 Score = 33.5 bits (75), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 5/93 (5%)

Query: 103 DPEMNFSTDELLRDFSGASDIQID---ISEFSNSPPAYDDANILQQHCTKTPHNVVFRGR 159
           DP      ++L+R     S   +D   + + S++ P Y  ANI+  H  K  H  V RG 
Sbjct: 153 DPNQTIIVNDLIRGEMSISSSTLDDKVLYKSSDNLPTYHLANIVDDHLMKITH--VIRGE 210

Query: 160 KSLIRTPTKLASSVAYPFAFIKPCGVHGDITLK 192
           + L  TP  +     + +    P   H  + LK
Sbjct: 211 EWLSSTPLHIILYQYFGWGEKMPVFAHLPLLLK 243


>sp|Q2RLX5|SECA_MOOTA Protein translocase subunit SecA OS=Moorella thermoacetica
          (strain ATCC 39073) GN=secA PE=3 SV=1
          Length = 896

 Score = 32.3 bits (72), Expect = 3.1,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 5/71 (7%)

Query: 1  MFFFYLRELISGNMSKEPKDCRETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNER 60
          M    LR L+  N     +D ++   Q++    L+ + Q +  S    + P  F +  ER
Sbjct: 1  MVLGILRNLLDDN----ARDIKKLSRQVEAINALEPEIQALSDSDLQAKTPE-FRRRLER 55

Query: 61 GESVEEVLPEA 71
          GE+++E+LPEA
Sbjct: 56 GETLDELLPEA 66


>sp|Q6P0T2|TAF8_DANRE Transcription initiation factor TFIID subunit 8 OS=Danio rerio
           GN=taf8 PE=1 SV=1
          Length = 308

 Score = 31.2 bits (69), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 69/166 (41%), Gaps = 18/166 (10%)

Query: 9   LISGNMSKEPKDCR---ETYSQIKRRRMLQFDTQVVDSSLCSDEMPSPFLKSNERGESVE 65
           L SG+ S   K C    E Y Q+ RRR LQ    VV S+L ++         +   ++V 
Sbjct: 12  LNSGSRSGSSKTCTSPTENY-QLARRRTLQ----VVVSALLTE------CGFDSAEKAVV 60

Query: 66  EVLPEASQ-WTTEFSGVSASSCDGTDQSLEGWISECLNDPEMNFSTDELLRDFSGASDIQ 124
           E L E  Q + TE    + ++C+ T +S        +   EM F+ D L      +  + 
Sbjct: 61  ETLTEMMQSYITEVGRCAKANCEHTARSTPTLSDVVITLVEMGFNVDTLPVYAKRSQRMV 120

Query: 125 IDISEFSNSP--PAYDDANILQQHCTKTP-HNVVFRGRKSLIRTPT 167
           I     +N+P  P    A   + H    P H   F    + IRTPT
Sbjct: 121 ITAPPITNAPVVPKSLTAGQKRTHPAHIPSHFPDFPDPHTYIRTPT 166


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.131    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,353,107
Number of Sequences: 539616
Number of extensions: 3748002
Number of successful extensions: 9910
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 9903
Number of HSP's gapped (non-prelim): 12
length of query: 247
length of database: 191,569,459
effective HSP length: 114
effective length of query: 133
effective length of database: 130,053,235
effective search space: 17297080255
effective search space used: 17297080255
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)