Query 025848
Match_columns 247
No_of_seqs 61 out of 63
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 10:14:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025848.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025848hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02817 E3_binding: e3 bindin 26.5 44 0.00095 22.7 1.5 17 178-194 21-37 (39)
2 PF06744 DUF1215: Protein of u 14.2 1E+02 0.0023 24.6 1.4 20 175-198 55-74 (125)
3 cd04412 NDPk7B Nucleoside diph 11.6 1.3E+02 0.0027 24.6 1.2 23 177-200 4-26 (134)
4 TIGR00214 lipB lipoate-protein 11.2 1.2E+02 0.0026 26.8 1.0 20 176-195 142-163 (184)
5 PF03471 CorC_HlyC: Transporte 10.6 1.4E+02 0.0031 21.8 1.1 17 185-201 10-26 (81)
6 PRK13015 3-dehydroquinate dehy 10.1 1.4E+02 0.0031 25.9 1.1 18 184-201 21-38 (146)
7 PF03785 Peptidase_C25_C: Pept 9.3 1.8E+02 0.0039 23.2 1.3 24 221-244 46-69 (81)
8 COG3889 Predicted solute bindi 9.2 2.1E+02 0.0045 31.3 2.0 30 167-198 483-513 (872)
9 KOG3266 Predicted glycine clea 8.6 1.7E+02 0.0036 26.3 0.9 29 179-209 107-135 (172)
10 PRK14341 lipoate-protein ligas 8.2 1.6E+02 0.0036 26.5 0.7 20 175-194 169-190 (213)
No 1
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=26.50 E-value=44 Score=22.66 Aligned_cols=17 Identities=35% Similarity=0.507 Sum_probs=15.6
Q ss_pred eeeccCCccCCcchHhH
Q 025848 178 AFIKPCGVHGDITLKDI 194 (247)
Q Consensus 178 ~lvKP~g~~GdvTL~DI 194 (247)
+-|++.|.+|-||..||
T Consensus 21 ~~v~gtG~~GrI~k~Dv 37 (39)
T PF02817_consen 21 SQVKGTGPGGRITKEDV 37 (39)
T ss_dssp GGSSSSSTTSBBCHHHH
T ss_pred ccccccCCCCcEeHHHh
Confidence 47899999999999998
No 2
>PF06744 DUF1215: Protein of unknown function (DUF1215); InterPro: IPR010623 This domain represents a conserved region situated towards the C-terminal end of several hypothetical bacterial proteins of unknown function. A few members resemble the ImcF protein, which has been proposed [] to be involved in Vibrio cholerae cell surface reorganisation that results in increased adherence to epithelial cells line and increased conjugation frequency.
Probab=14.21 E-value=1e+02 Score=24.59 Aligned_cols=20 Identities=30% Similarity=0.575 Sum_probs=15.6
Q ss_pred eeeeeeccCCccCCcchHhHHhhh
Q 025848 175 YPFAFIKPCGVHGDITLKDINQRI 198 (247)
Q Consensus 175 yPF~lvKP~g~~GdvTL~DIN~rI 198 (247)
|||+ -...-||+|.|+++-.
T Consensus 55 YPF~----~~s~~dv~l~Df~~fF 74 (125)
T PF06744_consen 55 YPFD----PDSSRDVSLADFARFF 74 (125)
T ss_pred CCCC----CCCcccCCHHHHHHHh
Confidence 9998 3456789999998654
No 3
>cd04412 NDPk7B Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=11.62 E-value=1.3e+02 Score=24.63 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=16.1
Q ss_pred eeeeccCCccCCcchHhHHhhhcC
Q 025848 177 FAFIKPCGVHGDITLKDINQRIHS 200 (247)
Q Consensus 177 F~lvKP~g~~GdvTL~DIN~rIl~ 200 (247)
|++|||+++.-. -+-.|-++|..
T Consensus 4 l~lIKPda~~~~-~~g~Ii~~i~~ 26 (134)
T cd04412 4 VCIIKPHAVSHG-LLGEILQQILD 26 (134)
T ss_pred EEEECchHhhcC-chHHHHHHHHH
Confidence 789999998654 23566666653
No 4
>TIGR00214 lipB lipoate-protein ligase B. Involved in lipoate biosynthesis as the main determinant of the lipoyl-protein ligase activity required for lipoylation of enzymes such as alpha-ketoacid dehydrogenases. Involved in activation and re-activation (following denaturation) of lipoyl-protein ligases (calcium ion-dependant process).
Probab=11.19 E-value=1.2e+02 Score=26.81 Aligned_cols=20 Identities=40% Similarity=0.853 Sum_probs=16.6
Q ss_pred eeeeeccCCccCC--cchHhHH
Q 025848 176 PFAFIKPCGVHGD--ITLKDIN 195 (247)
Q Consensus 176 PF~lvKP~g~~Gd--vTL~DIN 195 (247)
||..|.|||+.|- ++|++++
T Consensus 142 ~F~~I~PCGl~~~~vTSl~~~~ 163 (184)
T TIGR00214 142 PFSHINPCGYAGREMGSLNQFL 163 (184)
T ss_pred HhccEEcCCCCCCcEeeHHHHc
Confidence 6999999999985 5787764
No 5
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=10.58 E-value=1.4e+02 Score=21.83 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=14.5
Q ss_pred ccCCcchHhHHhhhcCC
Q 025848 185 VHGDITLKDINQRIHSP 201 (247)
Q Consensus 185 ~~GdvTL~DIN~rIl~p 201 (247)
+.|.++|.|+|+.+-..
T Consensus 10 v~G~~~l~~l~~~~~~~ 26 (81)
T PF03471_consen 10 VSGSTPLDDLNELLGLD 26 (81)
T ss_dssp EETTSBHHHHHHHHTS-
T ss_pred EEecCCHHHHHHHHCcC
Confidence 57999999999998875
No 6
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=10.06 E-value=1.4e+02 Score=25.85 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=15.6
Q ss_pred CccCCcchHhHHhhhcCC
Q 025848 184 GVHGDITLKDINQRIHSP 201 (247)
Q Consensus 184 g~~GdvTL~DIN~rIl~p 201 (247)
..-|.+||.||++++...
T Consensus 21 ~iYG~~tl~~i~~~~~~~ 38 (146)
T PRK13015 21 AIYGHETLADVEALCRAA 38 (146)
T ss_pred CcCCCCCHHHHHHHHHHH
Confidence 456899999999999876
No 7
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=9.26 E-value=1.8e+02 Score=23.19 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=14.8
Q ss_pred CCCcceeeeeeeeCCCceeEEEEe
Q 025848 221 SGKPVVGKTKIRTEGGKGSITIMR 244 (247)
Q Consensus 221 SGK~Vv~~Tri~T~gg~GtITI~R 244 (247)
||++++.+++.-|+.|-=++||+|
T Consensus 46 sG~ati~l~~~it~~~~~tlTit~ 69 (81)
T PF03785_consen 46 SGNATINLTNPITDEGTLTLTITA 69 (81)
T ss_dssp TTEEEEE-SS--TT-SEEEEEEE-
T ss_pred CceEEEECCcccCCCceEEEEEEE
Confidence 999999999666654555666665
No 8
>COG3889 Predicted solute binding protein [General function prediction only]
Probab=9.18 E-value=2.1e+02 Score=31.30 Aligned_cols=30 Identities=43% Similarity=0.489 Sum_probs=24.8
Q ss_pred ccccceeeeeeeeeccCCccCC-cchHhHHhhh
Q 025848 167 TKLASSVAYPFAFIKPCGVHGD-ITLKDINQRI 198 (247)
Q Consensus 167 ~k~~t~vayPF~lvKP~g~~Gd-vTL~DIN~rI 198 (247)
.|...+|.|||-.=| |.||- +||+||=.-|
T Consensus 483 ekAk~kV~~~~~~~k--WhDGq~itlaDil~~~ 513 (872)
T COG3889 483 EKAKIKVTYPFLDAK--WHDGQPITLADILKLI 513 (872)
T ss_pred CeeeeEEEEEecccc--ccCCCccCHHHHHHHH
Confidence 778899999987766 89996 9999996544
No 9
>KOG3266 consensus Predicted glycine cleavage system H protein [Amino acid transport and metabolism]
Probab=8.59 E-value=1.7e+02 Score=26.32 Aligned_cols=29 Identities=28% Similarity=0.573 Sum_probs=20.7
Q ss_pred eeccCCccCCcchHhHHhhhcCCCCccCCCC
Q 025848 179 FIKPCGVHGDITLKDINQRIHSPASTLRQNT 209 (247)
Q Consensus 179 lvKP~g~~GdvTL~DIN~rIl~pP~~pv~~~ 209 (247)
.+=|+++.| ||=++|.||+.-|.--..+|
T Consensus 107 y~V~scVrG--~LvEvN~rl~~~P~ll~~~p 135 (172)
T KOG3266|consen 107 YVVRSCVRG--TLVEVNERLKTTPDLLREAP 135 (172)
T ss_pred EEEeeeece--eEEEeehhhccCcHHHHhCC
Confidence 344667776 78899999999886444444
No 10
>PRK14341 lipoate-protein ligase B; Provisional
Probab=8.17 E-value=1.6e+02 Score=26.53 Aligned_cols=20 Identities=35% Similarity=0.685 Sum_probs=16.0
Q ss_pred eeeeeeccCCccCC--cchHhH
Q 025848 175 YPFAFIKPCGVHGD--ITLKDI 194 (247)
Q Consensus 175 yPF~lvKP~g~~Gd--vTL~DI 194 (247)
-+|..|-|||.+|- ++|+++
T Consensus 169 ~~F~~IvPCGl~~~~vTSl~~~ 190 (213)
T PRK14341 169 SHFSGIVPCGISEHGVTSLVDL 190 (213)
T ss_pred hhhCcEecCCCCCCcEeeHHHh
Confidence 35999999999984 567764
Done!