Query 025848
Match_columns 247
No_of_seqs 61 out of 63
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 18:57:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025848.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025848hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wkj_A Nucleoside diphosphate 9.2 71 0.0024 25.4 0.1 24 176-200 4-27 (137)
2 2hur_A NDK, nucleoside diphosp 8.8 75 0.0026 25.4 0.1 25 176-201 5-29 (142)
3 3zwl_E Eukaryotic translation 8.8 79 0.0027 21.9 0.2 8 28-35 15-22 (50)
4 1nhk_R Nucleoside diphosphate 8.4 79 0.0027 25.4 0.1 25 176-201 5-29 (144)
5 3llb_A Uncharacterized protein 8.2 1.3E+02 0.0043 21.3 1.1 17 185-201 13-29 (83)
6 4hr2_A Nucleoside diphosphate 8.2 82 0.0028 25.5 0.1 25 175-200 9-33 (145)
7 2r2z_A Hemolysin; APC85144, en 8.1 1.3E+02 0.0044 21.5 1.1 17 185-201 20-36 (93)
8 4dx8_H KREV interaction trappe 8.0 2.4E+02 0.0082 24.6 2.9 26 212-237 83-108 (203)
9 3lae_A UPF0053 protein HI0107; 8.0 1.3E+02 0.0045 21.1 1.1 17 185-201 13-29 (81)
10 2p4p_A Hypothetical protein HD 7.8 1.3E+02 0.0046 21.2 1.1 17 185-201 13-29 (86)
No 1
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Probab=9.17 E-value=71 Score=25.39 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=16.9
Q ss_pred eeeeeccCCccCCcchHhHHhhhcC
Q 025848 176 PFAFIKPCGVHGDITLKDINQRIHS 200 (247)
Q Consensus 176 PF~lvKP~g~~GdvTL~DIN~rIl~ 200 (247)
=|.+|||+++.-.. +-+|-+||..
T Consensus 4 Tl~iIKPdav~~~~-~g~Ii~~ie~ 27 (137)
T 1wkj_A 4 TFVMIKPDGVRRGL-VGEILARFER 27 (137)
T ss_dssp EEEEECHHHHHTTC-HHHHHHHHHH
T ss_pred EEEEEChHHhhccc-HHHHHHHHHH
Confidence 38899999986543 4667666643
No 2
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli}
Probab=8.76 E-value=75 Score=25.44 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=17.9
Q ss_pred eeeeeccCCccCCcchHhHHhhhcCC
Q 025848 176 PFAFIKPCGVHGDITLKDINQRIHSP 201 (247)
Q Consensus 176 PF~lvKP~g~~GdvTL~DIN~rIl~p 201 (247)
=|.+|||+++.-.. +-+|-+||...
T Consensus 5 Tl~iIKPdav~~~~-~g~Ii~~ie~~ 29 (142)
T 2hur_A 5 TFSIIKPNAVAKNV-IGNIFARFEAA 29 (142)
T ss_dssp EEEEECHHHHHTTC-HHHHHHHHHHT
T ss_pred EEEEEChHHHhccc-HHHHHHHHHHC
Confidence 48999999986543 45777777543
No 3
>3zwl_E Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=8.75 E-value=79 Score=21.93 Aligned_cols=8 Identities=25% Similarity=0.762 Sum_probs=6.0
Q ss_pred Hhhhhhcc
Q 025848 28 IKRRRMLQ 35 (247)
Q Consensus 28 ~KRRRmLq 35 (247)
.+|||||+
T Consensus 15 e~RRrlLe 22 (50)
T 3zwl_E 15 LHQRELLK 22 (50)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 47888885
No 4
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A
Probab=8.42 E-value=79 Score=25.41 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=18.0
Q ss_pred eeeeeccCCccCCcchHhHHhhhcCC
Q 025848 176 PFAFIKPCGVHGDITLKDINQRIHSP 201 (247)
Q Consensus 176 PF~lvKP~g~~GdvTL~DIN~rIl~p 201 (247)
=|.+|||+++.-.. +-+|-+||...
T Consensus 5 Tl~iIKPdav~~~~-~g~Ii~~ie~~ 29 (144)
T 1nhk_R 5 TLSIIKPDGLEKGV-IGKIISRFEEK 29 (144)
T ss_dssp EEEEECHHHHHTTC-HHHHHHHHHHT
T ss_pred EEEEEChHHHhccc-HHHHHHHHHHC
Confidence 48999999986554 45777777543
No 5
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=8.23 E-value=1.3e+02 Score=21.27 Aligned_cols=17 Identities=18% Similarity=0.116 Sum_probs=14.8
Q ss_pred ccCCcchHhHHhhhcCC
Q 025848 185 VHGDITLKDINQRIHSP 201 (247)
Q Consensus 185 ~~GdvTL~DIN~rIl~p 201 (247)
++|.+.|.|+|+.+-..
T Consensus 13 v~G~~~l~dl~~~l~~~ 29 (83)
T 3llb_A 13 VKALTPVDAFNDFFGSE 29 (83)
T ss_dssp EETTCBHHHHHHHHCCC
T ss_pred EEccCCHHHHHHHhCCC
Confidence 67999999999998764
No 6
>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A*
Probab=8.16 E-value=82 Score=25.53 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=17.3
Q ss_pred eeeeeeccCCccCCcchHhHHhhhcC
Q 025848 175 YPFAFIKPCGVHGDITLKDINQRIHS 200 (247)
Q Consensus 175 yPF~lvKP~g~~GdvTL~DIN~rIl~ 200 (247)
.=|++|||+++.-.. +-+|-+||..
T Consensus 9 rTl~iIKPDav~~~l-~g~Ii~rie~ 33 (145)
T 4hr2_A 9 RTLSIIKPDAVAKNV-IGQIYSRFEN 33 (145)
T ss_dssp EEEEEECHHHHHTTC-HHHHHHHHHH
T ss_pred HeEEEEChHHhhcCC-HHHHHHHHHH
Confidence 458999999876543 4567777643
No 7
>2r2z_A Hemolysin; APC85144, enterococcus faecalis V583, STRU initiative, midwest center for structural genomics, MCSG; 1.20A {Enterococcus faecalis} SCOP: d.145.1.4
Probab=8.11 E-value=1.3e+02 Score=21.51 Aligned_cols=17 Identities=18% Similarity=0.487 Sum_probs=15.1
Q ss_pred ccCCcchHhHHhhhcCC
Q 025848 185 VHGDITLKDINQRIHSP 201 (247)
Q Consensus 185 ~~GdvTL~DIN~rIl~p 201 (247)
+.|.++|.|+|+.+-..
T Consensus 20 v~G~~~l~dl~~~l~~~ 36 (93)
T 2r2z_A 20 VQGRMLIDEFNEVFETD 36 (93)
T ss_dssp EETTSBHHHHHHHHTCC
T ss_pred EECCCCHHHHHHHhCCC
Confidence 78999999999998765
No 8
>4dx8_H KREV interaction trapped protein 1; protein-protien complex, PTB domain, nudix fold, protein-Pro interaction, membrane, nucleus, protein binding; 2.54A {Homo sapiens}
Probab=8.01 E-value=2.4e+02 Score=24.63 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=19.1
Q ss_pred CCCCCCCCCCCCcceeeeeeeeCCCc
Q 025848 212 PSAYPKSAFSGKPVVGKTKIRTEGGK 237 (247)
Q Consensus 212 p~~~~~~glSGK~Vv~~Tri~T~gg~ 237 (247)
|.++..-|+.||.||...++.-+|++
T Consensus 83 piSp~nqG~~gKRVV~mKkf~ldg~~ 108 (203)
T 4dx8_H 83 PISPANQGIRGKRVVLMKKFPLDGEK 108 (203)
T ss_dssp CC---CCCCCCSCCEEEEEEECCSSC
T ss_pred cCCCCCccccceeEEEeeecccccCC
Confidence 33445679999999999999998643
No 9
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*
Probab=8.00 E-value=1.3e+02 Score=21.09 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=14.9
Q ss_pred ccCCcchHhHHhhhcCC
Q 025848 185 VHGDITLKDINQRIHSP 201 (247)
Q Consensus 185 ~~GdvTL~DIN~rIl~p 201 (247)
++|.++|.|+|+.+-..
T Consensus 13 v~g~~~l~dl~~~l~~~ 29 (81)
T 3lae_A 13 IDGSANLRDLNKMFNWE 29 (81)
T ss_dssp EETTCBHHHHHHHHCCC
T ss_pred EEeeCCHHHHHHHhCCC
Confidence 67999999999998765
No 10
>2p4p_A Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03471, structural GE PSI-2, protein structure initiative, midwest center for STR genomics; HET: MLY MSE; 1.80A {Haemophilus ducreyi} SCOP: d.145.1.4
Probab=7.84 E-value=1.3e+02 Score=21.22 Aligned_cols=17 Identities=18% Similarity=0.434 Sum_probs=14.9
Q ss_pred ccCCcchHhHHhhhcCC
Q 025848 185 VHGDITLKDINQRIHSP 201 (247)
Q Consensus 185 ~~GdvTL~DIN~rIl~p 201 (247)
++|.++|.|+|+.+-..
T Consensus 13 v~G~~~l~dl~~~l~~~ 29 (86)
T 2p4p_A 13 IDGATPLEDVMRALNIH 29 (86)
T ss_dssp EETTSBHHHHHHHTTCC
T ss_pred EEccCCHHHHHHHhCCC
Confidence 68999999999998764
Done!