BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025849
         (247 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4FCZ|B Chain B, Crystal Structure Of Toluene-tolerance Protein From
          Pseudomonas Putida (strain Kt2440), Northeast
          Structural Genomics Consortium (nesg) Target Ppr99
 pdb|4FCZ|A Chain A, Crystal Structure Of Toluene-tolerance Protein From
          Pseudomonas Putida (strain Kt2440), Northeast
          Structural Genomics Consortium (nesg) Target Ppr99
          Length = 223

 Score = 30.8 bits (68), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 12/66 (18%)

Query: 29 IDDLKVDLEWYKEVSRLKNKSYYDSFNNSLGGAGKPLSSPVVLADMEHRQVKTVNSFLAE 88
          + DLK + E YK        ++YDS N  LG        PVV AD   R + TV      
Sbjct: 38 LGDLKANKEQYKSNP----NAFYDSLNRILG--------PVVDADGISRSIXTVKYSRKA 85

Query: 89 TPESTE 94
          TPE  +
Sbjct: 86 TPEQXQ 91


>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of
           The Yeast Chd1 Chromatin Remodeler
          Length = 800

 Score = 27.7 bits (60), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 3/114 (2%)

Query: 9   QSELEEGIAERKMVSDLSNRIDDLKVDLEWYKEVSRLKNKSYYDSFNNSLGGAGKPLSSP 68
           ++ LEEG    K V DL+N  ++ +  ++W  E         Y+S     G   K L + 
Sbjct: 49  KTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRG--LKRLDNY 106

Query: 69  VVLADMEHRQVKTVNSFLAETPESTEAMVNAKEAGEFAAVNVPSDVLQSQSSFL 122
                +E +QV+      AE  E  + M   +   EF   +VP  ++ SQ + L
Sbjct: 107 CKQFIIEDQQVRLDPYVTAEDIEIMD-MERERRLDEFEEFHVPERIIDSQRASL 159


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.131    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,145,157
Number of Sequences: 62578
Number of extensions: 216815
Number of successful extensions: 819
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 819
Number of HSP's gapped (non-prelim): 5
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)