Query 025850
Match_columns 247
No_of_seqs 140 out of 1077
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 19:00:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025850.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025850hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lyh_A Cobalamin (vitamin B12) 99.9 3.3E-27 1.1E-31 188.4 11.3 118 122-242 1-118 (126)
2 2xws_A Sirohydrochlorin cobalt 99.9 9.5E-26 3.2E-30 180.2 9.5 116 125-243 2-124 (133)
3 1tjn_A Sirohydrochlorin cobalt 99.9 1.9E-25 6.5E-30 185.6 9.5 116 125-243 23-145 (156)
4 2xwp_A Sirohydrochlorin cobalt 99.8 1.1E-21 3.8E-26 174.7 6.0 166 46-242 83-253 (264)
5 2xwp_A Sirohydrochlorin cobalt 99.8 1.1E-19 3.6E-24 161.9 13.7 111 126-239 2-125 (264)
6 2xvy_A Chelatase, putative; me 99.8 4.1E-19 1.4E-23 157.4 13.5 119 123-242 6-136 (269)
7 2xvy_A Chelatase, putative; me 99.7 3.4E-19 1.2E-23 157.9 -0.3 140 86-242 119-262 (269)
8 2jh3_A Ribosomal protein S2-re 99.7 3.4E-18 1.2E-22 164.9 3.5 114 125-242 2-131 (474)
9 2jh3_A Ribosomal protein S2-re 99.6 1.2E-17 4.2E-22 161.0 0.4 175 45-242 72-262 (474)
10 2h1v_A Ferrochelatase; rossman 99.2 6.9E-11 2.4E-15 107.8 10.7 118 125-243 174-306 (310)
11 2h1v_A Ferrochelatase; rossman 99.0 5.2E-10 1.8E-14 102.0 8.8 105 133-242 51-162 (310)
12 1lbq_A Ferrochelatase; rossman 99.0 1.7E-09 5.8E-14 101.0 10.3 107 133-241 68-182 (362)
13 1lbq_A Ferrochelatase; rossman 98.4 1.7E-08 5.8E-13 94.3 -1.0 160 52-241 142-322 (362)
14 3hcn_A Ferrochelatase, mitocho 98.1 3E-05 1E-09 72.3 12.5 114 125-240 190-320 (359)
15 3hcn_A Ferrochelatase, mitocho 98.0 3.3E-05 1.1E-09 72.0 11.9 97 144-241 75-177 (359)
16 3s99_A Basic membrane lipoprot 59.0 91 0.0031 28.0 11.2 88 127-225 27-117 (356)
17 1xg8_A Hypothetical protein SA 43.0 17 0.00057 28.3 2.9 61 138-202 25-91 (111)
18 3g1w_A Sugar ABC transporter; 42.2 70 0.0024 26.5 7.1 67 125-193 3-70 (305)
19 3mtq_A Putative phosphoenolpyr 38.7 1.4E+02 0.0047 24.0 8.1 70 124-201 19-92 (159)
20 3gdw_A Sigma-54 interaction do 34.7 90 0.0031 24.5 6.2 28 125-155 3-30 (139)
21 3l6u_A ABC-type sugar transpor 30.7 1.8E+02 0.0061 23.7 7.7 65 127-193 9-73 (293)
22 3l49_A ABC sugar (ribose) tran 30.3 1.9E+02 0.0065 23.4 7.9 65 127-193 6-70 (291)
23 3o74_A Fructose transport syst 28.6 2.1E+02 0.0073 22.8 7.8 65 128-194 4-68 (272)
24 3o1i_D Periplasmic protein TOR 28.2 2E+02 0.0067 23.5 7.6 66 126-194 5-73 (304)
25 3bed_A PTS system, IIA compone 27.7 98 0.0034 23.9 5.3 24 127-154 6-29 (142)
26 3cf4_G Acetyl-COA decarboxylas 27.7 60 0.002 25.9 4.1 29 125-153 34-62 (170)
27 3uug_A Multiple sugar-binding 27.7 1.9E+02 0.0067 23.9 7.6 64 128-193 5-68 (330)
28 3m9w_A D-xylose-binding peripl 26.6 2.1E+02 0.0073 23.6 7.6 63 129-193 5-67 (313)
29 3jy6_A Transcriptional regulat 26.5 2.2E+02 0.0076 23.0 7.6 66 127-194 8-73 (276)
30 3gbv_A Putative LACI-family tr 26.0 2.6E+02 0.009 22.6 8.5 66 127-193 9-78 (304)
31 3egc_A Putative ribose operon 25.5 2.5E+02 0.0084 22.8 7.7 66 127-194 9-74 (291)
32 3gx1_A LIN1832 protein; APC633 25.0 2.3E+02 0.008 21.7 7.4 49 125-180 3-51 (130)
33 3h75_A Periplasmic sugar-bindi 24.8 2.7E+02 0.0093 23.5 8.1 64 127-192 4-70 (350)
34 3lfh_A Manxa, phosphotransfera 24.8 1.1E+02 0.0038 24.0 5.1 26 125-154 2-27 (144)
35 3tb6_A Arabinose metabolism tr 24.8 2.6E+02 0.0089 22.6 7.7 66 127-194 16-81 (298)
36 3hs3_A Ribose operon repressor 24.8 2.6E+02 0.0088 22.7 7.7 64 127-192 11-75 (277)
37 3k9c_A Transcriptional regulat 24.4 1.6E+02 0.0054 24.3 6.3 62 127-194 15-76 (289)
38 1to0_A Hypothetical UPF0247 pr 23.8 2.2E+02 0.0075 23.2 6.9 102 129-235 3-119 (167)
39 3e61_A Putative transcriptiona 23.3 2.2E+02 0.0074 23.0 6.9 63 128-192 10-72 (277)
40 1dbq_A Purine repressor; trans 23.2 3E+02 0.01 22.2 7.9 65 128-194 9-73 (289)
41 3ih5_A Electron transfer flavo 22.1 2.9E+02 0.0098 23.0 7.5 93 141-240 20-113 (217)
42 3kke_A LACI family transcripti 21.9 2.6E+02 0.0088 23.1 7.2 64 129-194 18-81 (303)
43 3lub_A Putative creatinine ami 20.8 1.8E+02 0.0061 25.0 6.1 45 173-223 99-143 (254)
44 3rot_A ABC sugar transporter, 20.7 2.8E+02 0.0097 22.7 7.2 65 127-193 4-70 (297)
45 4ao6_A Esterase; hydrolase, th 20.3 95 0.0032 25.4 4.1 33 125-158 54-86 (259)
46 3h5o_A Transcriptional regulat 20.0 3E+02 0.01 23.1 7.4 65 128-194 64-128 (339)
47 2hqb_A Transcriptional activat 20.0 2.7E+02 0.0093 23.3 7.1 68 143-224 24-93 (296)
No 1
>3lyh_A Cobalamin (vitamin B12) biosynthesis CBIX protein; structural genomics, joint center for structural genomics, protein structure initiative; HET: MSE; 1.60A {Marinobacter aquaeolei}
Probab=99.94 E-value=3.3e-27 Score=188.43 Aligned_cols=118 Identities=27% Similarity=0.377 Sum_probs=109.0
Q ss_pred CCCCCcEEEEEeCCCCCchHHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeccccCcccc
Q 025850 122 GVGDKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHW 201 (247)
Q Consensus 122 ~~~~~~aVLLVaHGSr~p~a~~~l~~la~~L~~r~~~~~V~~AFLE~a~PSL~eaL~~L~a~G~~~VvVVPlFL~~G~H~ 201 (247)
|+..+++||||+|||++++++..+..++++++++. .+|+.||+|+++|++++++++|.++|+++|+|+||||++|.|+
T Consensus 1 ~m~~~~alllv~HGS~~~~~~~~~~~l~~~l~~~~--~~V~~a~le~~~P~l~~~l~~l~~~G~~~vvvvPlfl~~G~H~ 78 (126)
T 3lyh_A 1 GMTQPHQIILLAHGSSDARWCETFEKLAEPTVESI--ENAAIAYMELAEPSLDTIVNRAKGQGVEQFTVVPLFLAAGRHL 78 (126)
T ss_dssp ----CEEEEEEECCCSCHHHHHHHHHHHHHHHHHS--TTCEEEESSSSSSBHHHHHHHHHHTTCCEEEEEECCSCCCHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHhhc--CCEEEEEEeCCCCCHHHHHHHHHHcCCCEEEEEecccCCCchh
Confidence 45667899999999999999999999999999998 4799999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhCCCccEEEcCCCCCcHHHHHHHHhccC
Q 025850 202 CQDIPSLTAEAAKEHPGVPYIVTAPLGLHEQLVNQTLFKPC 242 (247)
Q Consensus 202 ~~DIp~~l~~~~~~~pg~~I~va~PLG~~p~LadlL~~R~a 242 (247)
++|||+.++++++++ ++++++++|||.+|.|++++.+|+.
T Consensus 79 ~~Dip~~~~~~~~~~-~~~i~~~~~LG~~p~l~~~l~~ri~ 118 (126)
T 3lyh_A 79 RKDVPAMIERLEAEH-GVTIRLAEPIGKNPRLGLAIRDVVK 118 (126)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEECCCGGGSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHh-CceEEEcCCCCCChHHHHHHHHHHH
Confidence 999999999999888 8899999999999999999999864
No 2
>2xws_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; 1.60A {Archaeoglobus fulgidus} PDB: 2dj5_A* 2xwq_A
Probab=99.92 E-value=9.5e-26 Score=180.20 Aligned_cols=116 Identities=21% Similarity=0.294 Sum_probs=108.0
Q ss_pred CCcEEEEEeCCCCCchHHHHHHHHHHHHHHHcCCceEEEEEecc-CCCCHHHHHHHHHHcCCCeEEEeeccccCcccccc
Q 025850 125 DKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMEL-AEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQ 203 (247)
Q Consensus 125 ~~~aVLLVaHGSr~p~a~~~l~~la~~L~~r~~~~~V~~AFLE~-a~PSL~eaL~~L~a~G~~~VvVVPlFL~~G~H~~~ 203 (247)
++++||||+|||++++++..+..++++++++.++.+|++||+|+ +.|++++++++| |+++|+|+||||++|.|+++
T Consensus 2 m~~alllv~HGS~~~~~~~~~~~la~~l~~~~~~~~V~~a~le~~~~Psl~~~l~~l---g~~~v~v~Plfl~~G~h~~~ 78 (133)
T 2xws_A 2 MRRGLVIVGHGSQLNHYREVMELHRKRIEESGAFDEVKIAFAARKRRPMPDEAIREM---NCDIIYVVPLFISYGLHVTE 78 (133)
T ss_dssp CCEEEEEEECSCCCHHHHHHHHHHHHHHHHHTSSSEEEEEESSTTCSSCHHHHHHHC---CCSEEEEEECCSSCCHHHHT
T ss_pred CcceEEEEECCCCCHHHHHHHHHHHHHHHhhCCCCcEEeeeeecCCCCCHHHHHHHc---CCCEEEEEeeeeCCCcchHh
Confidence 45899999999999999999999999999999888999999998 899999999999 99999999999999999999
Q ss_pred cHHHHHHHHHH------hCCCccEEEcCCCCCcHHHHHHHHhccCC
Q 025850 204 DIPSLTAEAAK------EHPGVPYIVTAPLGLHEQLVNQTLFKPCS 243 (247)
Q Consensus 204 DIp~~l~~~~~------~~pg~~I~va~PLG~~p~LadlL~~R~ag 243 (247)
|||+.++.+++ .++++++++++|||.+|.+++++.+|+.+
T Consensus 79 di~~~~~~~~~~~s~~~~~~~~~i~~~~pLg~~p~~~~~l~~ri~~ 124 (133)
T 2xws_A 79 DLPDLLGFPRGRGIKEGEFEGKKVVICEPIGEDYFVTYAILNSVFR 124 (133)
T ss_dssp HHHHHHTCCCSSSCEEEEETTEEEEECCCSTTSHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhccccccccCCCceEEEcCCCCCCHHHHHHHHHHHHH
Confidence 99999876655 67889999999999999999999998654
No 3
>1tjn_A Sirohydrochlorin cobaltochelatase; AF0721, APC5049, midwest consortium for structural genomics, structure initiative, A. fulgidus; 2.01A {Archaeoglobus fulgidus} SCOP: c.92.1.3
Probab=99.92 E-value=1.9e-25 Score=185.61 Aligned_cols=116 Identities=21% Similarity=0.294 Sum_probs=108.6
Q ss_pred CCcEEEEEeCCCCCchHHHHHHHHHHHHHHHcCCceEEEEEecc-CCCCHHHHHHHHHHcCCCeEEEeeccccCcccccc
Q 025850 125 DKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMEL-AEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQ 203 (247)
Q Consensus 125 ~~~aVLLVaHGSr~p~a~~~l~~la~~L~~r~~~~~V~~AFLE~-a~PSL~eaL~~L~a~G~~~VvVVPlFL~~G~H~~~ 203 (247)
++++||||+|||++|.++..+.+++++|+++.++.+|++||+|+ ++|++++++++| |+++|+|+||||++|.|+++
T Consensus 23 M~~avlLv~HGS~~p~~~~~~~~la~~l~~~~~~~~V~~afle~~~~Psl~~~l~~l---G~~~VvVvPlfL~~G~h~~~ 99 (156)
T 1tjn_A 23 MRRGLVIVGHGSQLNHYREVMELHRKRIEESGAFDEVKIAFAARKRRPMPDEAIREM---NCDIIYVVPLFISYGLHVTE 99 (156)
T ss_dssp CCEEEEEEECCTTSTTHHHHHHHHHHHHHHHTSSSEEEEEECSSSCSSCHHHHHHHC---CCSEEEEEECCSSCSHHHHT
T ss_pred CCcCEEEEECCCCCHHHHHHHHHHHHHHHhhCCCCeEEEEEecCCCCCCHHHHHHHc---CCCEEEEEechhcCCchhHh
Confidence 55899999999999999999999999999999888999999998 999999999999 99999999999999999999
Q ss_pred cHHHHHHHHHH------hCCCccEEEcCCCCCcHHHHHHHHhccCC
Q 025850 204 DIPSLTAEAAK------EHPGVPYIVTAPLGLHEQLVNQTLFKPCS 243 (247)
Q Consensus 204 DIp~~l~~~~~------~~pg~~I~va~PLG~~p~LadlL~~R~ag 243 (247)
|||+.++++++ .++++++.+++|||.+|.+++++++|+.+
T Consensus 100 DIp~~l~~~~~~~sw~~~~~~~~i~~~~pLG~~p~l~~~l~~ri~e 145 (156)
T 1tjn_A 100 DLPDLLGFPRGRGIKEGEFEGKKVVICEPIGEDYFVTYAILNSVFR 145 (156)
T ss_dssp HHHHHHTCCCSSSCEEEEETTEEEEECCCSTTCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccccccCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999887655 67899999999999999999999998654
No 4
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; HET: SIR; 1.90A {Salmonella enterica} PDB: 1qgo_A*
Probab=99.84 E-value=1.1e-21 Score=174.74 Aligned_cols=166 Identities=12% Similarity=0.101 Sum_probs=127.3
Q ss_pred HHhhcccCCCCCccchHHhhccChhhhcCCCceeeeeeccCccCCCCCCCCCCCCcccccCCCcccccccccCCCCCCCC
Q 025850 46 KITSSLHKPSETPNSWKADQNMSVESLALSPQFTVKRCSIGEVGTKNPIWVHPNSLNFQRGPSRTKHLSIKSSSRDGVGD 125 (247)
Q Consensus 46 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~ 125 (247)
.|+.+.|.. |+|..++..+...| .+++. .|+|+ ||. ... .....+.+. .. ...+
T Consensus 83 ~l~~G~~~~-di~~~v~~~~~~~~-------~i~~~----~pl~~-~~~-----~~~-----~l~~~l~~~--~~-~~~~ 136 (264)
T 2xwp_A 83 HIINGDEYE-KIVREVQLLRPLFT-------RLTLG----VPLLS-SHN-----DYV-----QLMQALRQQ--MP-SLRQ 136 (264)
T ss_dssp CSSSSHHHH-HHHHHHHHHGGGCS-------EEEEE----CCSSC-SHH-----HHH-----HHHHHHHTT--SC-CCCT
T ss_pred cccCcHHHH-HHHHHHHHHHhhCC-------ceEEe----cCCCC-CHH-----HHH-----HHHHHHHHh--cc-ccCC
Confidence 347888887 99999988875544 44433 58999 764 221 111222211 11 1236
Q ss_pred CcEEEEEeCCCCCchHHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeccccCcccccccH
Q 025850 126 KDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDI 205 (247)
Q Consensus 126 ~~aVLLVaHGSr~p~a~~~l~~la~~L~~r~~~~~V~~AFLE~a~PSL~eaL~~L~a~G~~~VvVVPlFL~~G~H~~~DI 205 (247)
+++|||++|||+++ +|..+..+++.++++. . .|++||+|. +|++++++++|.++|+++|+|+||||++|.|+++||
T Consensus 137 ~~~lvl~gHGs~~~-~~~~~~~~a~~l~~~~-~-~v~~g~~e~-~P~~~~~l~~l~~~G~~~v~v~P~~l~aG~h~~~Di 212 (264)
T 2xwp_A 137 TEKVVFMGHGASHH-AFAAYACLDHMMTAQR-F-PARVGAVES-YPEVDILIDSLRDEGVTGVHLMPLMLVAGDHAINDM 212 (264)
T ss_dssp TEEEEEEECCCSSG-GGHHHHHHHHHHHHTT-C-SEEEEESSS-SSCHHHHHHHHHHHTCCEEEEEECSSCCCHHHHHHH
T ss_pred CCeEEEEECCCCch-hhHHHHHHHHHHHhhC-C-CEEEEEeCC-CCCHHHHHHHHHHCCCCEEEEEeeecccCcchhhhc
Confidence 67999999999998 8999999999999885 4 899999995 999999999999999999999999999999999999
Q ss_pred HHH-----HHHHHHhCCCccEEEcCCCCCcHHHHHHHHhccC
Q 025850 206 PSL-----TAEAAKEHPGVPYIVTAPLGLHEQLVNQTLFKPC 242 (247)
Q Consensus 206 p~~-----l~~~~~~~pg~~I~va~PLG~~p~LadlL~~R~a 242 (247)
+.. ...+.+.+.++. .+.+|||.+|.+++++.+|+.
T Consensus 213 ~~~~~d~~~~~~~~~g~~~~-~~~~~LG~~p~i~~~~~~r~~ 253 (264)
T 2xwp_A 213 ASDDGDSWKMRFNAAGIPAT-PWLSGLGENPAIRAMFVAHLH 253 (264)
T ss_dssp HSSSTTSHHHHHHHTTCCEE-ECCCCGGGCHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHcCCeEE-EeccCCCCCHHHHHHHHHHHH
Confidence 975 334444444443 357999999999999999864
No 5
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; HET: SIR; 1.90A {Salmonella enterica} PDB: 1qgo_A*
Probab=99.82 E-value=1.1e-19 Score=161.89 Aligned_cols=111 Identities=12% Similarity=0.063 Sum_probs=100.9
Q ss_pred CcEEEEEeCCCCCchHHH-HHHHHHHHHHHHcCCceEEEEEec------------cCCCCHHHHHHHHHHcCCCeEEEee
Q 025850 126 KDGVIIVDHGSRRRESNL-MLKQFVAMFREKTGYLIVEPAHME------------LAEPSIKDAFGSCVQQGANRVIVSP 192 (247)
Q Consensus 126 ~~aVLLVaHGSr~p~a~~-~l~~la~~L~~r~~~~~V~~AFLE------------~a~PSL~eaL~~L~a~G~~~VvVVP 192 (247)
+++||||+|||++++++. +++.+++++++++|+.+|+.||++ ...|++.++|++|.++|+++|+|+|
T Consensus 2 ~~aillv~hGSr~~~~~~~~~~~~~~~v~~~~p~~~V~~af~s~~i~~~l~~~~g~~~psi~~aL~~l~~~G~~~vvV~P 81 (264)
T 2xwp_A 2 KKALLVVSFGTSYHDTCEKNIVACERDLAASCPDRDLFRAFTSGMIIRKLRQRDGIDIDTPLQALQKLAAQGYQDVAIQS 81 (264)
T ss_dssp CEEEEEEECCCSCHHHHHHHHHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHCCCCCCHHHHHHHHHHHTCCEEEEEE
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCeEEeehhhHHHHHHHHHhcCCCCCCHHHHHHHHHhCCCCEEEEEe
Confidence 579999999999999999 999999999999999999999995 4679999999999999999999999
Q ss_pred ccccCcccccccHHHHHHHHHHhCCCccEEEcCCCCCcHHHHHHHHh
Q 025850 193 FFLFPGRHWCQDIPSLTAEAAKEHPGVPYIVTAPLGLHEQLVNQTLF 239 (247)
Q Consensus 193 lFL~~G~H~~~DIp~~l~~~~~~~pg~~I~va~PLG~~p~LadlL~~ 239 (247)
+|+++|.|++ |||..++.++..|+ ++.+++|||.++.+.+.+++
T Consensus 82 l~l~~G~~~~-di~~~v~~~~~~~~--~i~~~~pl~~~~~~~~~l~~ 125 (264)
T 2xwp_A 82 LHIINGDEYE-KIVREVQLLRPLFT--RLTLGVPLLSSHNDYVQLMQ 125 (264)
T ss_dssp CCSSSSHHHH-HHHHHHHHHGGGCS--EEEEECCSSCSHHHHHHHHH
T ss_pred CcccCcHHHH-HHHHHHHHHHhhCC--ceEEecCCCCCHHHHHHHHH
Confidence 9999999996 99999999988887 56889999999855555554
No 6
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=99.80 E-value=4.1e-19 Score=157.40 Aligned_cols=119 Identities=18% Similarity=0.174 Sum_probs=103.9
Q ss_pred CCCCcEEEEEeCCCCCchHHHHHHHHHHHHHHHcCCceEEEEEec-----------cCCCCHHHHHHHHHHcCCCeEEEe
Q 025850 123 VGDKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHME-----------LAEPSIKDAFGSCVQQGANRVIVS 191 (247)
Q Consensus 123 ~~~~~aVLLVaHGSr~p~a~~~l~~la~~L~~r~~~~~V~~AFLE-----------~a~PSL~eaL~~L~a~G~~~VvVV 191 (247)
+.++++||||+|||++++++..++.+++++++++++.+|+.||++ ...|++++++++|.++|+++|+|+
T Consensus 6 ~~~~~aillv~hGS~~~~~~~~~~~~~~~l~~~~~~~~V~~af~~~~i~~~l~~~~~~~P~i~~al~~l~~~G~~~ivV~ 85 (269)
T 2xvy_A 6 KAQKTGILLVAFGTSVEEARPALDKMGDRVRAAHPDIPVRWAYTAKMIRAKLRAEGIAAPSPAEALAGMAEEGFTHVAVQ 85 (269)
T ss_dssp --CCEEEEEEECCCCCTTTTHHHHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCceEEEEeCCCCcHHHHHHHHHHHHHHHHHCCCCeEEeehhhHHHHHHHHHcCCCCCCHHHHHHHHHHCCCCEEEEE
Confidence 456789999999999999999999999999999998899999999 889999999999999999999999
Q ss_pred eccccCcccccccHHHHHHHHHHhCC-CccEEEcCCCCCcHHHHHHHHhccC
Q 025850 192 PFFLFPGRHWCQDIPSLTAEAAKEHP-GVPYIVTAPLGLHEQLVNQTLFKPC 242 (247)
Q Consensus 192 PlFL~~G~H~~~DIp~~l~~~~~~~p-g~~I~va~PLG~~p~LadlL~~R~a 242 (247)
|+|+++|..+ +||++.++.+.+... ..++.+++|+|.+|.+++++++|+.
T Consensus 86 Pl~l~~G~~~-~di~~~~~~l~~~~~~~~~i~~~~pl~~~p~~i~~la~~i~ 136 (269)
T 2xvy_A 86 SLHTIPGEEF-HGLLETAHAFQGLPKGLTRVSVGLPLIGTTADAEAVAEALV 136 (269)
T ss_dssp ECCSSSSHHH-HHHHHHHHHHTTCTTSCSEEEEECCSSCSHHHHHHHHHHHH
T ss_pred eceeeccHhH-HHHHHHHHHHHHhhccCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999855 589998554443222 2678999999999999999998754
No 7
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=99.72 E-value=3.4e-19 Score=157.87 Aligned_cols=140 Identities=12% Similarity=0.085 Sum_probs=109.8
Q ss_pred CccCCCCCCCCCCCCcccccCCCcccccccccCCCCCCCCCcEEEEEeCCCCCchHHHHHHHHHHHHHHHcCCceEEEEE
Q 025850 86 GEVGTKNPIWVHPNSLNFQRGPSRTKHLSIKSSSRDGVGDKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAH 165 (247)
Q Consensus 86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~aVLLVaHGSr~p~a~~~l~~la~~L~~r~~~~~V~~AF 165 (247)
.++|. ||. +. .+...++.++. ......+.+|||++|||++ .++..+.++++.|+++. ..+++++
T Consensus 119 ~pl~~-~p~-----~i-----~~la~~i~~~~--~~~~~~~~~lll~~HGs~~-~~~~~~~~~a~~l~~~~--~~~~~g~ 182 (269)
T 2xvy_A 119 LPLIG-TTA-----DA-----EAVAEALVASL--PADRKPGEPVVFMGHGTPH-PADICYPGLQYYLWRLD--PDLLVGT 182 (269)
T ss_dssp CCSSC-SHH-----HH-----HHHHHHHHHHS--CTTCCTTCCEEEEECCCSS-GGGGHHHHHHHHHHTTC--TTEEEEE
T ss_pred CCCCC-CHH-----HH-----HHHHHHHHHhc--hhhccCCceEEEEECCCCh-hhccHHHHHHHHHHhcC--CCEEEEE
Confidence 58998 886 55 33344454442 1112356799999999998 78888999999998763 4688999
Q ss_pred eccCCCCHHHHHHHHHHcCCCeEEEeeccccCcccccccHHHHH-HHHHHhCC--CccEE-EcCCCCCcHHHHHHHHhcc
Q 025850 166 MELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIPSLT-AEAAKEHP--GVPYI-VTAPLGLHEQLVNQTLFKP 241 (247)
Q Consensus 166 LE~a~PSL~eaL~~L~a~G~~~VvVVPlFL~~G~H~~~DIp~~l-~~~~~~~p--g~~I~-va~PLG~~p~LadlL~~R~ 241 (247)
+|. +|++++++++|.++|+++|+|+|+|+++|.|+++||+..+ .++++.++ |.++. ++++||.+|.+++++.+|+
T Consensus 183 ~e~-~P~~~~~l~~l~~~G~~~v~v~P~~l~~G~h~~~di~~~~~~~~~~~~~~~g~~~~~~~~~Lg~~p~~~~~l~~~~ 261 (269)
T 2xvy_A 183 VEG-SPSFDNVMAELDVRKAKRVWLMPLMAVAGDHARNDMAGDEDDSWTSQLARRGIEAKPVLHGTAESDAVAAIWLRHL 261 (269)
T ss_dssp SSS-SSCHHHHHHHHHHHTCSEEEEEEESSSCCHHHHTTTTCSSTTSHHHHHHHTTCEEEECCCCGGGCHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHHHCCCCEEEEECCccccccchhhhcCCCchhHHHHHHHHcCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 984 8999999999999999999999999999999999997654 23444333 66655 8999999999999999976
Q ss_pred C
Q 025850 242 C 242 (247)
Q Consensus 242 a 242 (247)
.
T Consensus 262 ~ 262 (269)
T 2xvy_A 262 D 262 (269)
T ss_dssp H
T ss_pred H
Confidence 4
No 8
>2jh3_A Ribosomal protein S2-related protein; CBIX, SAD phasing, structural genomics, chelatase super-family fold, 4Fe-4S iron-sulphur cluster; 1.9A {Deinococcus radiodurans}
Probab=99.70 E-value=3.4e-18 Score=164.89 Aligned_cols=114 Identities=21% Similarity=0.258 Sum_probs=103.4
Q ss_pred CCcEEEEEeCCC-CCchHHHHHHHHHHHHHHHcC-----CceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeccccCc
Q 025850 125 DKDGVIIVDHGS-RRRESNLMLKQFVAMFREKTG-----YLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPG 198 (247)
Q Consensus 125 ~~~aVLLVaHGS-r~p~a~~~l~~la~~L~~r~~-----~~~V~~AFLE~a~PSL~eaL~~L~a~G~~~VvVVPlFL~~G 198 (247)
++.+||||+||| +++.++..++.++++++++.+ +.+|+.||++ .+|++++++++| |+++|+|+|+|+++|
T Consensus 2 mk~alLLVgHGSp~~~~a~~~i~~La~~l~~~~~~~~L~~~~V~~Afle-~~PsI~eaL~~L---G~~rVvVvPLfl~~G 77 (474)
T 2jh3_A 2 ALRSLVLIGHGSHHHGESARATQQVAEALRGRGLAGHLPYDEVLEGYWQ-QEPGLRQVLRTV---AYSDVTVVPVFLSEG 77 (474)
T ss_dssp CBCEEEEEECCCSSCTHHHHHHHHHHHHHHHHHHTTCCSCSEEEEEESS-SSSBTTTGGGGC---CBSEEEEEECCSCCS
T ss_pred CcceEEEEeCCCCCChhHHHHHHHHHHHHHHhCCccccCCCeEEEEEcC-CCCCHHHHHHHc---CcCeEEEEEEehhcc
Confidence 568999999999 589999999999999999876 7789999999 899999999998 999999999999999
Q ss_pred ccccccHHHHHHHHHH----------hCCCccEEEcCCCCCcHHHHHHHHhccC
Q 025850 199 RHWCQDIPSLTAEAAK----------EHPGVPYIVTAPLGLHEQLVNQTLFKPC 242 (247)
Q Consensus 199 ~H~~~DIp~~l~~~~~----------~~pg~~I~va~PLG~~p~LadlL~~R~a 242 (247)
.|+++|||+.++..+. .+++++|.+++|||.+|.+++++++|+.
T Consensus 78 ~H~~~DIp~~l~~~~~~~dsw~~~~~~~p~~~I~~~~pLG~~P~lie~la~rI~ 131 (474)
T 2jh3_A 78 YVTETVLPRELGLGHQGPVPTGGVVRVLGGRRVRYTRPLGAHPGMADAIAAQAR 131 (474)
T ss_dssp HHHHTHHHHHHTCCCCSCCCTTCEEEEETTEEEEECCCGGGSTTHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHhhhccccchhhhhhcCCceEEEeCccCCCHHHHHHHHHHHH
Confidence 9999999998876543 4677889999999999999999999754
No 9
>2jh3_A Ribosomal protein S2-related protein; CBIX, SAD phasing, structural genomics, chelatase super-family fold, 4Fe-4S iron-sulphur cluster; 1.9A {Deinococcus radiodurans}
Probab=99.65 E-value=1.2e-17 Score=161.02 Aligned_cols=175 Identities=16% Similarity=0.228 Sum_probs=132.9
Q ss_pred HHHhhcccCCCCCccchHHhhcc--Ch-hhhcCCCceeeeeeccCccCCCCCCCCCCCCcccccCCCcccccccccCCCC
Q 025850 45 CKITSSLHKPSETPNSWKADQNM--SV-ESLALSPQFTVKRCSIGEVGTKNPIWVHPNSLNFQRGPSRTKHLSIKSSSRD 121 (247)
Q Consensus 45 ~~~~~~~~~~~~~p~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ 121 (247)
.+|..++|.+.|||..+..++.. |- ..+...+.+.++ +. .++|. ||. +. .....++.++ ...
T Consensus 72 Lfl~~G~H~~~DIp~~l~~~~~~~dsw~~~~~~~p~~~I~-~~-~pLG~-~P~-----li-----e~la~rI~ea--l~~ 136 (474)
T 2jh3_A 72 VFLSEGYVTETVLPRELGLGHQGPVPTGGVVRVLGGRRVR-YT-RPLGA-HPG-----MA-----DAIAAQARDT--LPE 136 (474)
T ss_dssp CCSCCSHHHHTHHHHHHTCCCCSCCCTTCEEEEETTEEEE-EC-CCGGG-STT-----HH-----HHHHHHHHHH--SCT
T ss_pred EehhccHhHHHHHHHHHHHhhhccccchhhhhhcCCceEE-Ee-CccCC-CHH-----HH-----HHHHHHHHHH--Hhh
Confidence 34688999999999988765420 00 000001134554 44 58999 887 66 3333444433 111
Q ss_pred CCC-CCcEEEEEeCCCCCchHHHHHHHHHHHHHHHcCCceEEEEEeccCCC-----------CHHHHHHHHHHcCCCeEE
Q 025850 122 GVG-DKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEP-----------SIKDAFGSCVQQGANRVI 189 (247)
Q Consensus 122 ~~~-~~~aVLLVaHGSr~p~a~~~l~~la~~L~~r~~~~~V~~AFLE~a~P-----------SL~eaL~~L~a~G~~~Vv 189 (247)
+.. .+.+|||++ ++.++..+.++++.|+++.++..|+++|++. .| ++++++++| |+++|+
T Consensus 137 g~~~~~~avvlvg----dp~a~~~~~~la~~L~e~lg~~~v~vaf~s~-~Pwl~P~~~wleP~l~d~l~~L---G~krVv 208 (474)
T 2jh3_A 137 GTDPADVTLLLLA----ARPGNAALETHAQALRERGQFAGVEVVLESR-EALTPESHAASAVPLSEWPSRV---EAGQAV 208 (474)
T ss_dssp TCCGGGCEEEEEE----SSTTCHHHHHHHHHHHHHCCSSEEEEEECCC-C---------CCEEGGGGGGGC---CSSCEE
T ss_pred ccCcccceEEEec----CchHHHHHHHHHHHHHHhcCCCcEEEEEEeC-CCCCCcccccccCCHHHHHHHc---CCCeEE
Confidence 222 346899999 8888999999999999999877899999997 77 999999987 999999
Q ss_pred EeeccccCcccccccHHHHHHHHHHhCC-CccEEEcCCCCCcHHHHHHHHhccC
Q 025850 190 VSPFFLFPGRHWCQDIPSLTAEAAKEHP-GVPYIVTAPLGLHEQLVNQTLFKPC 242 (247)
Q Consensus 190 VVPlFL~~G~H~~~DIp~~l~~~~~~~p-g~~I~va~PLG~~p~LadlL~~R~a 242 (247)
|+|||+++|.|+.+||+..++.....+| |.++.++++||.+|.++++|.+|+.
T Consensus 209 V~P~Fl~dG~h~~~DI~~~~~~~~~~~p~G~~v~~~~~LG~~p~~~~ll~~rv~ 262 (474)
T 2jh3_A 209 LVPFLTHLGKHAAERLQQALAQAAERFPQAPPLHVGGPVGEHPAVAEVVLALAA 262 (474)
T ss_dssp EEECSSCCCHHHHHHHHHHHHHHHHHCTTCCCEEECCCGGGSTTHHHHHHHHHH
T ss_pred EEEeeccCCcchHHHHHHHHHHHHHhccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998877777777 8999999999999999999998754
No 10
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=99.19 E-value=6.9e-11 Score=107.81 Aligned_cols=118 Identities=12% Similarity=0.101 Sum_probs=99.3
Q ss_pred CCcEEEEEeCCCCCc------hHHHHHHHHHHHHHHHcCCceEEEEEecc-------CCCCHHHHHHHHHHc-CCCeEEE
Q 025850 125 DKDGVIIVDHGSRRR------ESNLMLKQFVAMFREKTGYLIVEPAHMEL-------AEPSIKDAFGSCVQQ-GANRVIV 190 (247)
Q Consensus 125 ~~~aVLLVaHGSr~p------~a~~~l~~la~~L~~r~~~~~V~~AFLE~-------a~PSL~eaL~~L~a~-G~~~VvV 190 (247)
.+..||+.+||+... ..+..+.+.++.+.++.+...+.+||.+. .+|++++++++|.++ |+++|+|
T Consensus 174 ~~~~llfs~HG~P~~~~~~gDpY~~~~~~t~~~l~e~l~~~~~~~~fqSrg~g~~~Wl~P~~~~~l~~l~~~~G~k~v~V 253 (310)
T 2h1v_A 174 ENAMLIVSAHSLPEKIKEFGDPYPDQLHESAKLIAEGAGVSEYAVGWQSEGNTPDPWLGPDVQDLTRDLFEQKGYQAFVY 253 (310)
T ss_dssp TSEEEEEEEECCBGGGGGGTCCHHHHHHHHHHHHHHHHTCSCEEEEEESCCCCSSCBSSCBHHHHHHHHHHHHCCSEEEE
T ss_pred CCceEEEecCCCchhhccCCCChHHHHHHHHHHHHHHcCCCCEEEEEEcCCCCCCCcCCCCHHHHHHHHHHHcCCceEEE
Confidence 457999999999743 26888999999999998877899999985 689999999999999 9999999
Q ss_pred eec-cccCcccccccHHHHHHHHHHhCCCccEEEcCCCCCcHHHHHHHHhccCC
Q 025850 191 SPF-FLFPGRHWCQDIPSLTAEAAKEHPGVPYIVTAPLGLHEQLVNQTLFKPCS 243 (247)
Q Consensus 191 VPl-FL~~G~H~~~DIp~~l~~~~~~~pg~~I~va~PLG~~p~LadlL~~R~ag 243 (247)
+|+ |+..+.++..||....++...+. |.++.+.+.||.+|.+++++++++.+
T Consensus 254 ~P~~F~sD~lEtl~ei~~e~~e~~~~~-G~~~~~~p~ln~~p~~i~~l~~~v~~ 306 (310)
T 2h1v_A 254 VPVGFVADHLEVLYDNDYECKVVTDDI-GASYYRPEMPNAKPEFIDALATVVLK 306 (310)
T ss_dssp ECTTCCSSCHHHHTTTTTHHHHHHHHH-TCEEECCCCCTTCHHHHHHHHHHHHH
T ss_pred ECCcccccceeeHHHHHHHHHHHHHHc-CCeEEECCCCCCCHHHHHHHHHHHHH
Confidence 998 66666777778877776655443 57899999999999999999987643
No 11
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=99.03 E-value=5.2e-10 Score=102.00 Aligned_cols=105 Identities=10% Similarity=-0.001 Sum_probs=82.9
Q ss_pred eCCCCCchHHH-HHHHHHHHHHHHcC--CceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeccccCcc----cccccH
Q 025850 133 DHGSRRRESNL-MLKQFVAMFREKTG--YLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGR----HWCQDI 205 (247)
Q Consensus 133 aHGSr~p~a~~-~l~~la~~L~~r~~--~~~V~~AFLE~a~PSL~eaL~~L~a~G~~~VvVVPlFL~~G~----H~~~DI 205 (247)
+|||+....+. ..+.+.+.|.++.+ ...|+.| |+++.|++++++++|.++|+++|+|+|+|...+. ++.+||
T Consensus 51 g~gSPl~~~t~~q~~~L~~~L~~~~~~~~~~V~~a-mry~~P~i~~~l~~l~~~G~~~ivvlPl~pq~s~st~g~~~~~i 129 (310)
T 2h1v_A 51 GGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIG-LAHIEPFIEDAVAEMHKDGITEAVSIVLAPHFSTFSVQSYNKRA 129 (310)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEE-ESSSSSBHHHHHHHHHHTTCCEEEEEESSSSCCTTTHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHhcCCCCCceEeeh-hcCCCCCHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHH
Confidence 68887555444 46777788877654 4589999 4899999999999999999999999999974433 445677
Q ss_pred HHHHHHHHHhCCCccEEEcCCCCCcHHHHHHHHhccC
Q 025850 206 PSLTAEAAKEHPGVPYIVTAPLGLHEQLVNQTLFKPC 242 (247)
Q Consensus 206 p~~l~~~~~~~pg~~I~va~PLG~~p~LadlL~~R~a 242 (247)
++.++.. ++.++.+.++++.||.+++++++++.
T Consensus 130 ~~~l~~~----~~~~i~~i~~~~~~p~~i~a~a~~i~ 162 (310)
T 2h1v_A 130 KEEAEKL----GGLTITSVESWYDEPKFVTYWVDRVK 162 (310)
T ss_dssp HHHHHHH----CSCEEEECCCCTTCHHHHHHHHHHHH
T ss_pred HHHHHhC----CCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 7666543 36788999999999999999998753
No 12
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Probab=98.98 E-value=1.7e-09 Score=101.04 Aligned_cols=107 Identities=9% Similarity=0.077 Sum_probs=86.7
Q ss_pred eCCCCCchHHH-HHHHHHHHHHHHc---CCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeccccCcc----ccccc
Q 025850 133 DHGSRRRESNL-MLKQFVAMFREKT---GYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGR----HWCQD 204 (247)
Q Consensus 133 aHGSr~p~a~~-~l~~la~~L~~r~---~~~~V~~AFLE~a~PSL~eaL~~L~a~G~~~VvVVPlFL~~G~----H~~~D 204 (247)
+|||+...... ..+.+.+.|.+.. ....|++| |+++.|++++++++|.++|+++|+|+|++...+. |+.+|
T Consensus 68 g~gSPL~~~t~~q~~~L~~~L~~~~~~~~~~~V~~a-mry~~P~i~d~l~~l~~~G~~~ivvlPlyPqyS~~ttgs~~~~ 146 (362)
T 1lbq_A 68 GGGSPIRKWSEYQATEVCKILDKTCPETAPHKPYVA-FRYAKPLTAETYKQMLKDGVKKAVAFSQYPHFSYSTTGSSINE 146 (362)
T ss_dssp TSSCSHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEE-ESSSSSCHHHHHHHHHTTTCCEEEEEESCSSCCTTTHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHhhcccCCCceEEee-cccCCCCHHHHHHHHHHcCCCeEEEEecchhccccchhHHHHH
Confidence 58898655443 4666777776553 24578999 6999999999999999999999999999986432 78889
Q ss_pred HHHHHHHHHHhCCCccEEEcCCCCCcHHHHHHHHhcc
Q 025850 205 IPSLTAEAAKEHPGVPYIVTAPLGLHEQLVNQTLFKP 241 (247)
Q Consensus 205 Ip~~l~~~~~~~pg~~I~va~PLG~~p~LadlL~~R~ 241 (247)
|++.+++. ...|++++.+.++++.||.+++++++++
T Consensus 147 i~~~l~~~-~~~~~i~i~~i~~~~~~p~~I~ala~~I 182 (362)
T 1lbq_A 147 LWRQIKAL-DSERSISWSVIDRWPTNEGLIKAFSENI 182 (362)
T ss_dssp HHHHHHHH-CTTCCSEEEEECCCTTCHHHHHHHHHHH
T ss_pred HHHHHHhc-ccCCCceEEEecCCCCCHHHHHHHHHHH
Confidence 99888877 3468888889999999999999999864
No 13
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Probab=98.44 E-value=1.7e-08 Score=94.26 Aligned_cols=160 Identities=11% Similarity=-0.009 Sum_probs=105.8
Q ss_pred cCCCCCccchHHhhccChhhhcCCCceeeeeeccCccCCCCCCCCCCCCcccccCCCcccccccccC-CCCCCCCCcEEE
Q 025850 52 HKPSETPNSWKADQNMSVESLALSPQFTVKRCSIGEVGTKNPIWVHPNSLNFQRGPSRTKHLSIKSS-SRDGVGDKDGVI 130 (247)
Q Consensus 52 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~a~~-~~~~~~~~~aVL 130 (247)
|+.-|+++.++..+ ..| .++++ +- ...+- ||. +. .+...++.++-. .......+..||
T Consensus 142 s~~~~i~~~l~~~~-~~~-------~i~i~-~i-~~~~~-~p~-----~I-----~ala~~I~~~l~~~~~~~~~~~~ll 200 (362)
T 1lbq_A 142 SSINELWRQIKALD-SER-------SISWS-VI-DRWPT-NEG-----LI-----KAFSENITKKLQEFPQPVRDKVVLL 200 (362)
T ss_dssp HHHHHHHHHHHHHC-TTC-------CSEEE-EE-CCCTT-CHH-----HH-----HHHHHHHHHHHHTSCSTTGGGCEEE
T ss_pred HHHHHHHHHHHhcc-cCC-------CceEE-Ee-cCCCC-CHH-----HH-----HHHHHHHHHHHHhcCcccCCCeEEE
Confidence 66677777766552 223 55544 22 36777 887 65 333444432210 111111345899
Q ss_pred EEeCCCC-------CchHHHHHHHHHHHHHHHcCCc-eEEEEEeccC------CCCHHHHHHHHHHcCCCeEEEeecccc
Q 025850 131 IVDHGSR-------RRESNLMLKQFVAMFREKTGYL-IVEPAHMELA------EPSIKDAFGSCVQQGANRVIVSPFFLF 196 (247)
Q Consensus 131 LVaHGSr-------~p~a~~~l~~la~~L~~r~~~~-~V~~AFLE~a------~PSL~eaL~~L~a~G~~~VvVVPlFL~ 196 (247)
+.+||.. || .+....+.++.+.++.+.. ++.++|-+.. +|++++++++| ++|+++|+|+|+. |
T Consensus 201 fSaHglP~~~~~~GDp-Y~~q~~~ta~ll~e~lg~~~~~~~~fQSr~G~~~WL~P~t~~~l~~L-~~G~k~vvVvP~g-F 277 (362)
T 1lbq_A 201 FSAHSLPMDVVNTGDA-YPAEVAATVYNIMQKLKFKNPYRLVWQSQVGPKPWLGAQTAEIAEFL-GPKVDGLMFIPIA-F 277 (362)
T ss_dssp EEEECCBHHHHTTTCS-HHHHHHHHHHHHHHHTTTCSCEEEEEECCCSSSCBCSCBHHHHHHHH-GGGCSCEEEECTT-C
T ss_pred EecCCCccccccCCCc-HHHHHHHHHHHHHHHcCCCCCEEEEEECCCCCcccCCCCHHHHHHHH-HcCCCeEEEECCe-e
Confidence 9999943 34 5678899999999998764 5899999854 69999999999 9999999999973 3
Q ss_pred CcccccccHHHHHHHH----HH--hCCCccEEEcCCCCCcHHHHHHHHhcc
Q 025850 197 PGRHWCQDIPSLTAEA----AK--EHPGVPYIVTAPLGLHEQLVNQTLFKP 241 (247)
Q Consensus 197 ~G~H~~~DIp~~l~~~----~~--~~pg~~I~va~PLG~~p~LadlL~~R~ 241 (247)
-+.|.. .+.++ ++ ...|. +.+.+.||.+|.+++.|++++
T Consensus 278 vsD~lE-----TL~eid~e~~e~~~~~G~-~~~~p~Ln~~p~fi~~L~~lv 322 (362)
T 1lbq_A 278 TSDHIE-----TLHEIDLGVIGESEYKDK-FKRCESLNGNQTFIEGMADLV 322 (362)
T ss_dssp SSCCHH-----HHTCCCCCCCTTCTTGGG-EEECCCCTTCHHHHHHHHHHH
T ss_pred chhhHh-----hHHHHHHHHHHHHHhCCC-EEEcCCCCCCHHHHHHHHHHH
Confidence 333432 22221 11 12354 899999999999999888754
No 14
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} SCOP: c.92.1.1 PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 4f4d_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A*
Probab=98.09 E-value=3e-05 Score=72.30 Aligned_cols=114 Identities=12% Similarity=0.086 Sum_probs=82.7
Q ss_pred CCcEEEEEeCCCCC------chHHHHHHHHHHHHHHHcCCc-eEEEEEecc-C-----CCCHHHHHHHHHHcCCCeEEEe
Q 025850 125 DKDGVIIVDHGSRR------RESNLMLKQFVAMFREKTGYL-IVEPAHMEL-A-----EPSIKDAFGSCVQQGANRVIVS 191 (247)
Q Consensus 125 ~~~aVLLVaHGSr~------p~a~~~l~~la~~L~~r~~~~-~V~~AFLE~-a-----~PSL~eaL~~L~a~G~~~VvVV 191 (247)
.+..||+.+||-.. ........+.++.++++.+.. ++.++|-+. + +|++++.++++.++|+++|+|+
T Consensus 190 ~~~~LlfSaHgiP~~~~~~GDpY~~q~~~t~~lv~e~Lg~~~~~~l~~QSr~G~~~WL~P~t~d~l~~L~~~G~k~vvv~ 269 (359)
T 3hcn_A 190 SEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLV 269 (359)
T ss_dssp GGCEEEEEEECCBHHHHTTTCSHHHHHHHHHHHHHHHTTTCSCEEEEEECCSCSSCBSSSBHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEcCCChHhhcccCCCHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCeEEEE
Confidence 34589999999742 125677888888888887754 478999763 2 5999999999999999999999
Q ss_pred eccccCcccc--cccHHHHH-HHHHHhCCCc-cEEEcCCCCCcHHHHHHHHhc
Q 025850 192 PFFLFPGRHW--CQDIPSLT-AEAAKEHPGV-PYIVTAPLGLHEQLVNQTLFK 240 (247)
Q Consensus 192 PlFL~~G~H~--~~DIp~~l-~~~~~~~pg~-~I~va~PLG~~p~LadlL~~R 240 (247)
|..++ ..|. -.||-... ++...+ .|. .+...+.|+.+|..++.|++.
T Consensus 270 P~gFv-sD~lETL~Eid~E~~~e~a~e-~G~~~~~rip~LNd~p~fi~~La~l 320 (359)
T 3hcn_A 270 PIAFT-SDHIETLYELDIEYSQVLAKE-CGVENIRRAESLNGNPLFSKALADL 320 (359)
T ss_dssp CTTCC-SCCCCCHHHHCHHHHHHHHHH-TCCCEEEECCCSTTCHHHHHHHHHH
T ss_pred CCccc-hhhHHhHHHHHHHHHHHHHHh-CCCceEEEcCCCCCCHHHHHHHHHH
Confidence 96533 3555 34443333 233233 355 689999999999888888764
No 15
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} SCOP: c.92.1.1 PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 4f4d_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A*
Probab=98.05 E-value=3.3e-05 Score=72.03 Aligned_cols=97 Identities=10% Similarity=-0.006 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHcC---CceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeccccCcccccccHHHH-HHHHHHh--CC
Q 025850 144 MLKQFVAMFREKTG---YLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIPSL-TAEAAKE--HP 217 (247)
Q Consensus 144 ~l~~la~~L~~r~~---~~~V~~AFLE~a~PSL~eaL~~L~a~G~~~VvVVPlFL~~G~H~~~DIp~~-l~~~~~~--~p 217 (247)
..+.+.+.|.+..+ ...|++|| .+..|++++++++|.++|+++|+++|++...+..+...+-+. .+.+++. .+
T Consensus 75 Q~~~L~~~L~~~~~~~~~~~V~~am-ry~~P~i~~~l~~l~~~G~~~ivvlPlyPqyS~~Ttgs~~~~~~~~~~~~~~~~ 153 (359)
T 3hcn_A 75 QGEGMVKLLDELSPNTAPHKYYIGF-RYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKP 153 (359)
T ss_dssp HHHHHHHHHHHHCGGGCSEEEEEEE-SSSSSBHHHHHHHHHHTTCSEEEEEESCSSCCTTTHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhhhcccccCceEEEEE-eeCCCCHHHHHHHHHhcCCCeEEEEECCccccccchhhHHHHHHHHHHHhccCC
Confidence 34455556655432 23788886 789999999999999999999999999986664443323222 2333332 46
Q ss_pred CccEEEcCCCCCcHHHHHHHHhcc
Q 025850 218 GVPYIVTAPLGLHEQLVNQTLFKP 241 (247)
Q Consensus 218 g~~I~va~PLG~~p~LadlL~~R~ 241 (247)
++.+.+.+++..||.+++++++++
T Consensus 154 ~~~~~~i~~~~~~p~yI~a~a~~I 177 (359)
T 3hcn_A 154 TMKWSTIDRWPTHHLLIQCFADHI 177 (359)
T ss_dssp SSEEEEECCCTTCHHHHHHHHHHH
T ss_pred CCceEEeCCccCCHHHHHHHHHHH
Confidence 678899999999999999999864
No 16
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=58.96 E-value=91 Score=28.00 Aligned_cols=88 Identities=17% Similarity=0.141 Sum_probs=55.1
Q ss_pred cEEEEEeCCCC-CchHHHHHHHHHHHHHHHcCCceEEEEEeccCCC--CHHHHHHHHHHcCCCeEEEeeccccCcccccc
Q 025850 127 DGVIIVDHGSR-RRESNLMLKQFVAMFREKTGYLIVEPAHMELAEP--SIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQ 203 (247)
Q Consensus 127 ~aVLLVaHGSr-~p~a~~~l~~la~~L~~r~~~~~V~~AFLE~a~P--SL~eaL~~L~a~G~~~VvVVPlFL~~G~H~~~ 203 (247)
..|-+|--|.. +..++....+=.+++++.++. .+.+-|.+.... ..++.++.++++|++-|+...+. .
T Consensus 27 ~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~-~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~~g~~------~-- 97 (356)
T 3s99_A 27 LKVGFIYIGPPGDFGWTYQHDQARKELVEALGD-KVETTFLENVAEGADAERSIKRIARAGNKLIFTTSFG------Y-- 97 (356)
T ss_dssp EEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTT-TEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEECSGG------G--
T ss_pred CEEEEEEccCCCchhHHHHHHHHHHHHHHHhCC-ceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEECCHH------H--
Confidence 34444445654 457887766666667666653 366667764322 46678999999999855554332 2
Q ss_pred cHHHHHHHHHHhCCCccEEEcC
Q 025850 204 DIPSLTAEAAKEHPGVPYIVTA 225 (247)
Q Consensus 204 DIp~~l~~~~~~~pg~~I~va~ 225 (247)
...+.+...++|++.+.+..
T Consensus 98 --~~~~~~vA~~~Pdv~fv~id 117 (356)
T 3s99_A 98 --MDPTVKVAKKFPDVKFEHAT 117 (356)
T ss_dssp --HHHHHHHHTTCTTSEEEEES
T ss_pred --HHHHHHHHHHCCCCEEEEEe
Confidence 12355666789998877654
No 17
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=42.96 E-value=17 Score=28.34 Aligned_cols=61 Identities=8% Similarity=0.098 Sum_probs=43.6
Q ss_pred CchHHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHH--H----HHHHHHHcCCCeEEEeeccccCccccc
Q 025850 138 RRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIK--D----AFGSCVQQGANRVIVSPFFLFPGRHWC 202 (247)
Q Consensus 138 ~p~a~~~l~~la~~L~~r~~~~~V~~AFLE~a~PSL~--e----aL~~L~a~G~~~VvVVPlFL~~G~H~~ 202 (247)
.|.+..+++-+..+|++++|..++.+.|+++..|+=+ + -.+++... =...|+.+..|.-+.
T Consensus 25 aPSSkeTyEWLqAal~RKyp~~~f~~~YIDI~~~~~~l~d~~~~~ae~I~ed----e~FYPlV~indeiVa 91 (111)
T 1xg8_A 25 APTSKDIYDWLQPLLKRKYPNISFKYTYIDITKDNDNLTDHDLQFIERIEQD----ELFYPLITMNDEYVA 91 (111)
T ss_dssp SCCHHHHHHHHHHHHHHHCTTSCEEEEEEETTTC---CCHHHHHHHHHHHTT----SSCSSEEEETTEEEE
T ss_pred CCCchhHHHHHHHHHhCcCCCCceEEEEEeccCCccchhHHHHHHHHHHhhc----cccceEEEECCEEee
Confidence 3788899999999999999999999999999887544 4 33444433 356677766665443
No 18
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=42.16 E-value=70 Score=26.46 Aligned_cols=67 Identities=10% Similarity=0.051 Sum_probs=43.1
Q ss_pred CCcEEEEEeCCCCCchHHHHHHHHHHHHHHHcCCceEEEEEeccCCC-CHHHHHHHHHHcCCCeEEEeec
Q 025850 125 DKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEP-SIKDAFGSCVQQGANRVIVSPF 193 (247)
Q Consensus 125 ~~~aVLLVaHGSr~p~a~~~l~~la~~L~~r~~~~~V~~AFLE~a~P-SL~eaL~~L~a~G~~~VvVVPl 193 (247)
++..|.++.+...++-....+..+.+.+++. ++ .+.+.+.....+ .-.+.++.+.+++++-|++.|.
T Consensus 3 ~~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~-g~-~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 70 (305)
T 3g1w_A 3 LNETYMMITFQSGMDYWKRCLKGFEDAAQAL-NV-TVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAI 70 (305)
T ss_dssp --CEEEEEESSTTSTHHHHHHHHHHHHHHHH-TC-EEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCS
T ss_pred CCceEEEEEccCCChHHHHHHHHHHHHHHHc-CC-EEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 3456788888888887777788888877765 54 454422211111 2335567777888998988875
No 19
>3mtq_A Putative phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) permease...; PTS system fructose IIA component; 1.70A {Klebsiella pneumoniae subsp}
Probab=38.66 E-value=1.4e+02 Score=24.03 Aligned_cols=70 Identities=21% Similarity=0.183 Sum_probs=38.2
Q ss_pred CCCcEEEEEeCCCCCchHHHHHHHHHHHHHHHcCCceE-EEEEeccCCC-CHHHHHHHHHHc-C-CCeEEEeeccccCcc
Q 025850 124 GDKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIV-EPAHMELAEP-SIKDAFGSCVQQ-G-ANRVIVSPFFLFPGR 199 (247)
Q Consensus 124 ~~~~aVLLVaHGSr~p~a~~~l~~la~~L~~r~~~~~V-~~AFLE~a~P-SL~eaL~~L~a~-G-~~~VvVVPlFL~~G~ 199 (247)
..+.+|||++||. ....+..-++.+-...+ .| .+++.. ..+ .+.+.+++..++ . .+.|+|+ .=++.|.
T Consensus 19 ~~~~~iII~sHG~----~A~gl~~s~~~i~G~~~--~v~av~~~~-~~~~~~~~~~~~~i~~~~~~~gVLiL-tDl~GGS 90 (159)
T 3mtq_A 19 GMKRHYIFASHGS----FANGLLNSVELILGKQP--DIHTLCAYV-EEEVDLTQQVEALVARFPAQDELIVI-TDIFAGS 90 (159)
T ss_dssp SCCEEEEEEEETT----HHHHHHHHHHHHHCCCT--TEEEEEETS-CSSSCHHHHHHHHHHTSCTTSEEEEE-ESCTTSH
T ss_pred ccCceEEEEeCcH----HHHHHHHHHHHHcCCCC--CeEEEECCC-CCHHHHHHHHHHHHHhcCCCCCEEEE-EeCCCCC
Confidence 3567999999996 33445566666653322 23 344332 233 677777776654 2 2344433 3344555
Q ss_pred cc
Q 025850 200 HW 201 (247)
Q Consensus 200 H~ 201 (247)
-.
T Consensus 91 P~ 92 (159)
T 3mtq_A 91 VN 92 (159)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 20
>3gdw_A Sigma-54 interaction domain protein; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=34.74 E-value=90 Score=24.48 Aligned_cols=28 Identities=14% Similarity=0.194 Sum_probs=18.7
Q ss_pred CCcEEEEEeCCCCCchHHHHHHHHHHHHHHH
Q 025850 125 DKDGVIIVDHGSRRRESNLMLKQFVAMFREK 155 (247)
Q Consensus 125 ~~~aVLLVaHGSr~p~a~~~l~~la~~L~~r 155 (247)
.+.+||+++||.+-. ..+...++++-..
T Consensus 3 ~~igiiIvtHG~s~A---~~l~~~a~~i~G~ 30 (139)
T 3gdw_A 3 ANVGVFVLMHGDSTA---SSMLKTAQELLGT 30 (139)
T ss_dssp CCCEEEEEEESSSHH---HHHHHHHHHHHTC
T ss_pred CceeEEEEcCCHHHH---HHHHHHHHHHcCc
Confidence 457999999998633 3455666665543
No 21
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=30.71 E-value=1.8e+02 Score=23.67 Aligned_cols=65 Identities=11% Similarity=0.095 Sum_probs=41.8
Q ss_pred cEEEEEeCCCCCchHHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeec
Q 025850 127 DGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPF 193 (247)
Q Consensus 127 ~aVLLVaHGSr~p~a~~~l~~la~~L~~r~~~~~V~~AFLE~a~PSL~eaL~~L~a~G~~~VvVVPl 193 (247)
..|-++.....++-....+..+.+.+++. ++ .+.+...+.......+.++.+.+++++-|++.|.
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-g~-~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 73 (293)
T 3l6u_A 9 NIVGFTIVNDKHEFAQRLINAFKAEAKAN-KY-EALVATSQNSRISEREQILEFVHLKVDAIFITTL 73 (293)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHT-TC-EEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred cEEEEEEecCCcHHHHHHHHHHHHHHHHc-CC-EEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 34556666666776777777777777765 54 5555544321122346777888889999998875
No 22
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=30.35 E-value=1.9e+02 Score=23.42 Aligned_cols=65 Identities=9% Similarity=0.002 Sum_probs=39.5
Q ss_pred cEEEEEeCCCCCchHHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeec
Q 025850 127 DGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPF 193 (247)
Q Consensus 127 ~aVLLVaHGSr~p~a~~~l~~la~~L~~r~~~~~V~~AFLE~a~PSL~eaL~~L~a~G~~~VvVVPl 193 (247)
..|-++..+..++-....+..+.+.+++. ++ .+.+.........-.+.++.+.+++++-|++.|.
T Consensus 6 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-g~-~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 70 (291)
T 3l49_A 6 KTIGITAIGTDHDWDLKAYQAQIAEIERL-GG-TAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLG 70 (291)
T ss_dssp CEEEEEESCCSSHHHHHHHHHHHHHHHHT-TC-EEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESS
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHc-CC-EEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 34555666666666666677777776654 44 4555433321112345677777888888888775
No 23
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=28.57 E-value=2.1e+02 Score=22.78 Aligned_cols=65 Identities=12% Similarity=0.050 Sum_probs=41.0
Q ss_pred EEEEEeCCCCCchHHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeecc
Q 025850 128 GVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFF 194 (247)
Q Consensus 128 aVLLVaHGSr~p~a~~~l~~la~~L~~r~~~~~V~~AFLE~a~PSL~eaL~~L~a~G~~~VvVVPlF 194 (247)
.|-++.....++-....+..+.+.+++. ++ .+.+...+.....-.+.++.+.+++++-|++.|..
T Consensus 4 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~-g~-~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 68 (272)
T 3o74_A 4 TLGFILPDLENPSYARIAKQLEQGARAR-GY-QLLIASSDDQPDSERQLQQLFRARRCDALFVASCL 68 (272)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHHHHHT-TC-EEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred EEEEEeCCCcChhHHHHHHHHHHHHHHC-CC-EEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 3455555666777777777777777764 54 45555443211123456777888899999888764
No 24
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=28.22 E-value=2e+02 Score=23.47 Aligned_cols=66 Identities=14% Similarity=0.112 Sum_probs=41.9
Q ss_pred CcEEEEEeCCCCCchHHHHHHHHHHHHHHHcCCceEEEEEeccCCCC---HHHHHHHHHHcCCCeEEEeecc
Q 025850 126 KDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPS---IKDAFGSCVQQGANRVIVSPFF 194 (247)
Q Consensus 126 ~~aVLLVaHGSr~p~a~~~l~~la~~L~~r~~~~~V~~AFLE~a~PS---L~eaL~~L~a~G~~~VvVVPlF 194 (247)
...|-++.....++-....+..+.+.+++. ++ .+.+..... ..+ -.+.++.+.+++++-|++.|..
T Consensus 5 ~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~-g~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~vdgiii~~~~ 73 (304)
T 3o1i_D 5 DEKICAIYPHLKDSYWLSVNYGMVSEAEKQ-GV-NLRVLEAGG-YPNKSRQEQQLALCTQWGANAIILGTVD 73 (304)
T ss_dssp CCEEEEEESCSCSHHHHHHHHHHHHHHHHH-TC-EEEEEECSS-TTCHHHHHHHHHHHHHHTCSEEEECCSS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHHc-CC-eEEEEcCCC-CCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 344555656666676667777777777665 54 555554432 113 3356677788899999988764
No 25
>3bed_A PTS system, IIA component; mannose/sorbose, phosphotransferase system, structural genom APC28805, PSI-2, protein structure initiative; HET: MSE MLY; 1.45A {Enterococcus faecalis} SCOP: c.54.1.1
Probab=27.73 E-value=98 Score=23.95 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=16.6
Q ss_pred cEEEEEeCCCCCchHHHHHHHHHHHHHH
Q 025850 127 DGVIIVDHGSRRRESNLMLKQFVAMFRE 154 (247)
Q Consensus 127 ~aVLLVaHGSr~p~a~~~l~~la~~L~~ 154 (247)
.+|||++||. ....+...++++..
T Consensus 6 i~iiivsHG~----~A~gl~~~~~~i~G 29 (142)
T 3bed_A 6 PKLILMSHGR----MAEETLASTQMIVG 29 (142)
T ss_dssp SEEEEEEETT----HHHHHHHHHHHHHC
T ss_pred ccEEEEcChH----HHHHHHHHHHHHcC
Confidence 7999999994 33456666666643
No 26
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=27.70 E-value=60 Score=25.86 Aligned_cols=29 Identities=10% Similarity=-0.044 Sum_probs=23.9
Q ss_pred CCcEEEEEeCCCCCchHHHHHHHHHHHHH
Q 025850 125 DKDGVIIVDHGSRRRESNLMLKQFVAMFR 153 (247)
Q Consensus 125 ~~~aVLLVaHGSr~p~a~~~l~~la~~L~ 153 (247)
.+..+|++|.|....++..++.+|++++.
T Consensus 34 AkrPvil~G~g~~~~~a~~~l~~lae~~~ 62 (170)
T 3cf4_G 34 AKRPLLMVGTLALDPELLDRVVKISKAAN 62 (170)
T ss_dssp CSSEEEEECSTTCCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEECCCccchhHHHHHHHHHHHhC
Confidence 45689999999998888888888888773
No 27
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=27.69 E-value=1.9e+02 Score=23.95 Aligned_cols=64 Identities=14% Similarity=0.120 Sum_probs=36.5
Q ss_pred EEEEEeCCCCCchHHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeec
Q 025850 128 GVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPF 193 (247)
Q Consensus 128 aVLLVaHGSr~p~a~~~l~~la~~L~~r~~~~~V~~AFLE~a~PSL~eaL~~L~a~G~~~VvVVPl 193 (247)
.|-++.....++-....+..+.+.+++. ++ .+.+...+.....-.+.++.+.+++++-|++.|.
T Consensus 5 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~-g~-~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~ 68 (330)
T 3uug_A 5 SVGIAMPTKSSARWIDDGNNIVKQLQEA-GY-KTDLQYADDDIPNQLSQIENMVTKGVKVLVIASI 68 (330)
T ss_dssp EEEEEECCSSSTHHHHHHHHHHHHHHHT-TC-EEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCS
T ss_pred EEEEEeCCCcchHHHHHHHHHHHHHHHc-CC-EEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 4455555566666666666666666654 44 4555443211111234566677778888887765
No 28
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=26.60 E-value=2.1e+02 Score=23.60 Aligned_cols=63 Identities=13% Similarity=0.111 Sum_probs=36.1
Q ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeec
Q 025850 129 VIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPF 193 (247)
Q Consensus 129 VLLVaHGSr~p~a~~~l~~la~~L~~r~~~~~V~~AFLE~a~PSL~eaL~~L~a~G~~~VvVVPl 193 (247)
|-++-....++-....+..+.+.+++. ++ .+.+...+.....-.+.++.+.+++++-|++.|.
T Consensus 5 Igvi~~~~~~~~~~~~~~gi~~~a~~~-g~-~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 67 (313)
T 3m9w_A 5 IGMAIDDLRLERWQKDRDIFVKKAESL-GA-KVFVQSANGNEETQMSQIENMINRGVDVLVIIPY 67 (313)
T ss_dssp EEEEESCCSSSTTHHHHHHHHHHHHHT-SC-EEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHHHc-CC-EEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 444445555666666666666666654 43 4544433311112335566777778888887775
No 29
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=26.46 E-value=2.2e+02 Score=22.99 Aligned_cols=66 Identities=14% Similarity=0.153 Sum_probs=41.9
Q ss_pred cEEEEEeCCCCCchHHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeecc
Q 025850 127 DGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFF 194 (247)
Q Consensus 127 ~aVLLVaHGSr~p~a~~~l~~la~~L~~r~~~~~V~~AFLE~a~PSL~eaL~~L~a~G~~~VvVVPlF 194 (247)
..|-++-....++-....+..+.+.+++. ++ .+.+.........-.+.++.+.+++++-|++.|..
T Consensus 8 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 73 (276)
T 3jy6_A 8 KLIAVIVANIDDYFSTELFKGISSILESR-GY-IGVLFDANADIEREKTLLRAIGSRGFDGLILQSFS 73 (276)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHTT-TC-EEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSC
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHC-CC-EEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 34555556666676777777777777765 54 55555443211123356777778889999998864
No 30
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=25.99 E-value=2.6e+02 Score=22.60 Aligned_cols=66 Identities=5% Similarity=-0.026 Sum_probs=42.6
Q ss_pred cEEEEEeCCC-CCchHHHHHHHHHHHHHHHcCCceEEEEEeccCCCCH---HHHHHHHHHcCCCeEEEeec
Q 025850 127 DGVIIVDHGS-RRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSI---KDAFGSCVQQGANRVIVSPF 193 (247)
Q Consensus 127 ~aVLLVaHGS-r~p~a~~~l~~la~~L~~r~~~~~V~~AFLE~a~PSL---~eaL~~L~a~G~~~VvVVPl 193 (247)
..|-++.... .++-....+..+.+.+++..++ .+.+.+......+. .+.++.+.+++++-|++.|.
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~-~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 78 (304)
T 3gbv_A 9 YTFACLLPKHLEGEYWTDVQKGIREAVTTYSDF-NISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPT 78 (304)
T ss_dssp EEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGG-CEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCS
T ss_pred ceEEEEecCCCCchHHHHHHHHHHHHHHHHHhC-CeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 3455555555 6777777777777777765233 46665543222333 45577888889999999886
No 31
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=25.49 E-value=2.5e+02 Score=22.85 Aligned_cols=66 Identities=17% Similarity=0.109 Sum_probs=42.2
Q ss_pred cEEEEEeCCCCCchHHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeecc
Q 025850 127 DGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFF 194 (247)
Q Consensus 127 ~aVLLVaHGSr~p~a~~~l~~la~~L~~r~~~~~V~~AFLE~a~PSL~eaL~~L~a~G~~~VvVVPlF 194 (247)
..|-++.....++-....+..+.+.+++. ++ .+.+.........-.+.++.+.+++++-|++.|..
T Consensus 9 ~~Igvv~~~~~~~~~~~~~~gi~~~a~~~-g~-~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 74 (291)
T 3egc_A 9 NVVGLIVSDIENVFFAEVASGVESEARHK-GY-SVLLANTAEDIVREREAVGQFFERRVDGLILAPSE 74 (291)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHT-TC-EEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCS
T ss_pred cEEEEEECCCcchHHHHHHHHHHHHHHHC-CC-EEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 34555556666676777777777777764 54 55555443211223456777888899999988864
No 32
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=25.01 E-value=2.3e+02 Score=21.66 Aligned_cols=49 Identities=12% Similarity=0.059 Sum_probs=27.1
Q ss_pred CCcEEEEEeCCCCCchHHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHH
Q 025850 125 DKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSC 180 (247)
Q Consensus 125 ~~~aVLLVaHGSr~p~a~~~l~~la~~L~~r~~~~~V~~AFLE~a~PSL~eaL~~L 180 (247)
.+.+||+++||.+-. ..+.+.++++-.. .. -..+.|.. .-++++..+++
T Consensus 3 ~~igiiivsHG~~~A---~~l~~~a~~i~G~-~~-~~aid~~~--~~~~~~~~~~i 51 (130)
T 3gx1_A 3 AQVEVIVMMHGRSTA---TSMVETVQELLSI-ES-GIALDMPL--TVEVKAMYEKL 51 (130)
T ss_dssp SSCEEEEEEESSSHH---HHHHHHHHHHHTC-CC-CEEEEECT--TSCHHHHHHHH
T ss_pred CceEEEEEcCCHHHH---HHHHHHHHHHcCc-cC-EEEEEecC--CCCHHHHHHHH
Confidence 457899999998633 3455666666543 22 22344432 23455555443
No 33
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=24.83 E-value=2.7e+02 Score=23.49 Aligned_cols=64 Identities=11% Similarity=0.045 Sum_probs=40.0
Q ss_pred cEEEEEeCCCCC-chHHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHH--cCCCeEEEee
Q 025850 127 DGVIIVDHGSRR-RESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQ--QGANRVIVSP 192 (247)
Q Consensus 127 ~aVLLVaHGSr~-p~a~~~l~~la~~L~~r~~~~~V~~AFLE~a~PSL~eaL~~L~a--~G~~~VvVVP 192 (247)
..|.++..+..+ +-+...+..+.+.+++. ++ .+.+...+.....-.+.++.+.+ ++++-|++.|
T Consensus 4 ~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~-g~-~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~ 70 (350)
T 3h75_A 4 TSVVFLNPGNSTETFWVSYSQFMQAAARDL-GL-DLRILYAERDPQNTLQQARELFQGRDKPDYLMLVN 70 (350)
T ss_dssp CEEEEEECSCTTCHHHHHHHHHHHHHHHHH-TC-EEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEEC
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHHc-CC-eEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 346666677665 77777777777777765 54 45555443211112345677777 5898888876
No 34
>3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} SCOP: c.54.1.0
Probab=24.82 E-value=1.1e+02 Score=24.02 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=17.2
Q ss_pred CCcEEEEEeCCCCCchHHHHHHHHHHHHHH
Q 025850 125 DKDGVIIVDHGSRRRESNLMLKQFVAMFRE 154 (247)
Q Consensus 125 ~~~aVLLVaHGSr~p~a~~~l~~la~~L~~ 154 (247)
++.+|||++||. ....+...++.+..
T Consensus 2 ~~igiii~sHG~----~A~gl~~~~~~i~G 27 (144)
T 3lfh_A 2 KEKFVLIITHGD----FGKGLLSGAEVIIG 27 (144)
T ss_dssp CCEEEEEEEETT----HHHHHHHHHHHHHC
T ss_pred CcceEEEEeCcH----HHHHHHHHHHHHcC
Confidence 347899999995 33445556666653
No 35
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=24.82 E-value=2.6e+02 Score=22.56 Aligned_cols=66 Identities=11% Similarity=0.114 Sum_probs=43.7
Q ss_pred cEEEEEeCCCCCchHHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeecc
Q 025850 127 DGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFF 194 (247)
Q Consensus 127 ~aVLLVaHGSr~p~a~~~l~~la~~L~~r~~~~~V~~AFLE~a~PSL~eaL~~L~a~G~~~VvVVPlF 194 (247)
..|-++.....++-....+..+.+.+++. ++ .+.+...+.....-.+.++.+.+++++-|++.|..
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-g~-~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 81 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQ-GY-SMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTK 81 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHT-TC-EEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSS
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHC-CC-EEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeccc
Confidence 35666666667777777788887777764 54 55555443211223456778888899999998864
No 36
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=24.81 E-value=2.6e+02 Score=22.73 Aligned_cols=64 Identities=11% Similarity=0.123 Sum_probs=41.2
Q ss_pred cEEEEEeCCCCCchHHHHHHHHHHHHHHHcCCce-EEEEEeccCCCCHHHHHHHHHHcCCCeEEEee
Q 025850 127 DGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLI-VEPAHMELAEPSIKDAFGSCVQQGANRVIVSP 192 (247)
Q Consensus 127 ~aVLLVaHGSr~p~a~~~l~~la~~L~~r~~~~~-V~~AFLE~a~PSL~eaL~~L~a~G~~~VvVVP 192 (247)
..|-++-....++-....+..+.+.+++. ++ . +.++........-.+.++.+.+++++-|++.|
T Consensus 11 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-g~-~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 11 KMIGIIIPDLNNRFYAQIIDGIQEVIQKE-GY-TALISFSTNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHT-TC-EEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CEEEEEeCCCCChhHHHHHHHHHHHHHHC-CC-CEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 44555656666777777777777777765 54 5 55544332111233457788888999999987
No 37
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=24.40 E-value=1.6e+02 Score=24.26 Aligned_cols=62 Identities=16% Similarity=0.121 Sum_probs=42.2
Q ss_pred cEEEEEeCCCCCchHHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeecc
Q 025850 127 DGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFF 194 (247)
Q Consensus 127 ~aVLLVaHGSr~p~a~~~l~~la~~L~~r~~~~~V~~AFLE~a~PSL~eaL~~L~a~G~~~VvVVPlF 194 (247)
-++++ ...++-....+..+.+.+++. ++ .+.+..... .+.-.+.++.+.+++++-|++.|..
T Consensus 15 Igvi~---~~~~~~~~~~~~gi~~~a~~~-g~-~~~~~~~~~-~~~~~~~~~~l~~~~vdgiIi~~~~ 76 (289)
T 3k9c_A 15 LGVVF---ELQQPFHGDLVEQIYAAATRR-GY-DVMLSAVAP-SRAEKVAVQALMRERCEAAILLGTR 76 (289)
T ss_dssp EEEEE---ETTCHHHHHHHHHHHHHHHHT-TC-EEEEEEEBT-TBCHHHHHHHHTTTTEEEEEEETCC
T ss_pred EEEEE---ecCCchHHHHHHHHHHHHHHC-CC-EEEEEeCCC-CHHHHHHHHHHHhCCCCEEEEECCC
Confidence 34444 456666777777777777765 55 566666553 3346778888888889889988753
No 38
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=23.84 E-value=2.2e+02 Score=23.21 Aligned_cols=102 Identities=13% Similarity=0.251 Sum_probs=54.1
Q ss_pred EEEEeCCCCCchH-HHHHHHHHHHHHHHcCCceEEEEEecc-CCC------CHHHHHH----HHHHc-CCCeEEEeeccc
Q 025850 129 VIIVDHGSRRRES-NLMLKQFVAMFREKTGYLIVEPAHMEL-AEP------SIKDAFG----SCVQQ-GANRVIVSPFFL 195 (247)
Q Consensus 129 VLLVaHGSr~p~a-~~~l~~la~~L~~r~~~~~V~~AFLE~-a~P------SL~eaL~----~L~a~-G~~~VvVVPlFL 195 (247)
|-|++-|...+.+ ...+++...++. ++..+++-.+.- ..| +.+...+ ++.+. .-+. +|+-+=
T Consensus 3 i~Ii~VGk~k~~~~~~~i~eY~kRl~---~~~~lei~ev~~~k~~~~~~~~~~~~~~~~E~~~il~~i~~~~-~vI~LD- 77 (167)
T 1to0_A 3 INIVTIGKLKEKYLKQGIEEYTKRLS---AYAKIDIIELPDEKAPENLSDQDMKIIKDKEGDRILSKISPDA-HVIALA- 77 (167)
T ss_dssp EEEEEESCCCCHHHHHHHHHHHHHHT---TTSEEEEEEECCCCC---------CHHHHHHHHHHHTTSCTTS-EEEEEE-
T ss_pred EEEEEEcccCcHHHHHHHHHHHHHcC---ccCCceEEEecCccCccccccccHHHHHHHHHHHHHhhcCCCC-EEEEEc-
Confidence 5677778776654 445666666665 345555544421 111 1111111 22221 1122 222222
Q ss_pred cCc-ccccccHHHHHHHHHHhC-CCccEEEcCCCCCcHHHHH
Q 025850 196 FPG-RHWCQDIPSLTAEAAKEH-PGVPYIVTAPLGLHEQLVN 235 (247)
Q Consensus 196 ~~G-~H~~~DIp~~l~~~~~~~-pg~~I~va~PLG~~p~Lad 235 (247)
-.| .....++.+.++.+.... .++.+.++.|.|.++.+.+
T Consensus 78 ~~Gk~~sS~~fA~~l~~~~~~G~~~i~FvIGGa~Gl~~~v~~ 119 (167)
T 1to0_A 78 IEGKMKTSEELADTIDKLATYGKSKVTFVIGGSLGLSDTVMK 119 (167)
T ss_dssp EEEEECCHHHHHHHHHHHHTTTCCEEEEEECCSSCCCHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHH
Confidence 245 444466777788777554 5688999999999987764
No 39
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=23.25 E-value=2.2e+02 Score=22.96 Aligned_cols=63 Identities=10% Similarity=0.047 Sum_probs=40.7
Q ss_pred EEEEEeCCCCCchHHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEee
Q 025850 128 GVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSP 192 (247)
Q Consensus 128 aVLLVaHGSr~p~a~~~l~~la~~L~~r~~~~~V~~AFLE~a~PSL~eaL~~L~a~G~~~VvVVP 192 (247)
.|-++.....++-....+..+.+.+++. ++ .+.+.........-.+.++.+.+.+++-|++.|
T Consensus 10 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~ 72 (277)
T 3e61_A 10 LIGLLLPDMSNPFFTLIARGVEDVALAH-GY-QVLIGNSDNDIKKAQGYLATFVSHNCTGMISTA 72 (277)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHHHHHT-TC-CEEEEECTTCHHHHHHHHHHHHHTTCSEEEECG
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHC-CC-EEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 3545555566777777777777777765 54 455554432111234567778888999999988
No 40
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=23.16 E-value=3e+02 Score=22.20 Aligned_cols=65 Identities=9% Similarity=0.001 Sum_probs=38.2
Q ss_pred EEEEEeCCCCCchHHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeecc
Q 025850 128 GVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFF 194 (247)
Q Consensus 128 aVLLVaHGSr~p~a~~~l~~la~~L~~r~~~~~V~~AFLE~a~PSL~eaL~~L~a~G~~~VvVVPlF 194 (247)
.|-++.....++-....+..+.+.+++. ++ .+.+...+.......+.++.+.+.+++-|++.|..
T Consensus 9 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 73 (289)
T 1dbq_A 9 SIGLLATSSEAAYFAEIIEAVEKNCFQK-GY-TLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSE 73 (289)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHH-TC-EEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHc-CC-eEEEEcCCCChHHHHHHHHHHHhCCCCEEEEEecc
Confidence 4555555556666666677777777654 54 45544332111112345677777888888887753
No 41
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=22.12 E-value=2.9e+02 Score=22.98 Aligned_cols=93 Identities=12% Similarity=0.010 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeeccccCcccccccHHHHHHHHHHh-CCCc
Q 025850 141 SNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIPSLTAEAAKE-HPGV 219 (247)
Q Consensus 141 a~~~l~~la~~L~~r~~~~~V~~AFLE~a~PSL~eaL~~L~a~G~~~VvVVPlFL~~G~H~~~DIp~~l~~~~~~-~pg~ 219 (247)
...++-..+++|++..+. +|..-.+. +..+++++++.+-|+++|+++.---+.++... .....+.++.++ .|++
T Consensus 20 ~s~ell~~A~~La~~~g~-~v~av~~G---~~~~~~~~~~~~~Gad~v~~v~~~~~~~~~~~-~~a~~l~~~i~~~~p~~ 94 (217)
T 3ih5_A 20 VSLELLTKGRSLANELNC-QLEAVVAG---TGLKEIEKQILPYGVDKLHVFDAEGLYPYTSL-PHTSILVNLFKEEQPQI 94 (217)
T ss_dssp HHHHHHHHHHHHHHHHTC-CEEEEEEE---SCCTTTHHHHGGGTCSEEEEEECGGGSSCCHH-HHHHHHHHHHHHHCCSE
T ss_pred HHHHHHHHHHHHHHhcCC-eEEEEEEC---CCHHHHHHHHHhcCCCEEEEecCcccccCCHH-HHHHHHHHHHHhcCCCE
Confidence 445566677888877665 45443332 22556677777889999999964333443332 244445544433 3443
Q ss_pred cEEEcCCCCCcHHHHHHHHhc
Q 025850 220 PYIVTAPLGLHEQLVNQTLFK 240 (247)
Q Consensus 220 ~I~va~PLG~~p~LadlL~~R 240 (247)
.+...=-....+.-.++.|
T Consensus 95 --Vl~g~t~~G~~laprlAa~ 113 (217)
T 3ih5_A 95 --CLMGATVIGRDLGPRVSSA 113 (217)
T ss_dssp --EEEECSHHHHHHHHHHHHH
T ss_pred --EEEeCCcchhhHHHHHHHH
Confidence 4433321223455444443
No 42
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=21.87 E-value=2.6e+02 Score=23.06 Aligned_cols=64 Identities=5% Similarity=-0.084 Sum_probs=42.3
Q ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeecc
Q 025850 129 VIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFF 194 (247)
Q Consensus 129 VLLVaHGSr~p~a~~~l~~la~~L~~r~~~~~V~~AFLE~a~PSL~eaL~~L~a~G~~~VvVVPlF 194 (247)
|-++.....++-....+..+.+.+++. ++ .+.+...+.....-.+.++.+.+++++-|++.|..
T Consensus 18 Igvi~~~~~~~~~~~~~~gi~~~a~~~-g~-~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 81 (303)
T 3kke_A 18 IGLIVPDVNNAVFADMFSGVQMAASGH-ST-DVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRRE 81 (303)
T ss_dssp EEEEESCTTSTTHHHHHHHHHHHHHHT-TC-CEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCT
T ss_pred EEEEeCCCcChHHHHHHHHHHHHHHHC-CC-EEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCC
Confidence 444555566677777788888777765 54 56665554222234556778888899999998763
No 43
>3lub_A Putative creatinine amidohydrolase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Bacteroides fragilis}
Probab=20.83 E-value=1.8e+02 Score=24.97 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=32.7
Q ss_pred HHHHHHHHHHcCCCeEEEeeccccCcccccccHHHHHHHHHHhCCCccEEE
Q 025850 173 IKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIPSLTAEAAKEHPGVPYIV 223 (247)
Q Consensus 173 L~eaL~~L~a~G~~~VvVVPlFL~~G~H~~~DIp~~l~~~~~~~pg~~I~v 223 (247)
+.+.++.+.+.|.++++++--+ |... |....++++.+++++.+..
T Consensus 99 l~di~~sl~~~G~rrlvivNgH---GGN~---l~~a~~~l~~~~~~~~v~~ 143 (254)
T 3lub_A 99 LEDIVSSLHVQGFRKLLILSGH---GGNN---FKGMIRDLAFEYPDFLIAA 143 (254)
T ss_dssp HHHHHHHHHHTTCCEEEEEESC---TTCC---CHHHHHHHHHHCTTCEEEE
T ss_pred HHHHHHHHHHcCCCEEEEEeCC---chHH---HHHHHHHHHHHCCCcEEEE
Confidence 6677788888999999998764 3222 5556778888887776543
No 44
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=20.65 E-value=2.8e+02 Score=22.67 Aligned_cols=65 Identities=9% Similarity=-0.026 Sum_probs=38.9
Q ss_pred cEEEEEeCCCCCchHHHHHHHHHHHHHHHcCCceEEEEEecc-CCC-CHHHHHHHHHHcCCCeEEEeec
Q 025850 127 DGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMEL-AEP-SIKDAFGSCVQQGANRVIVSPF 193 (247)
Q Consensus 127 ~aVLLVaHGSr~p~a~~~l~~la~~L~~r~~~~~V~~AFLE~-a~P-SL~eaL~~L~a~G~~~VvVVPl 193 (247)
..|-++..+..++-....+..+.+.+++. ++ .+.+...+. ..+ .-.+.++.+.+++++-|++.|.
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-g~-~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 70 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEEL-KV-DLQILAPPGANDVPKQVQFIESALATYPSGIATTIP 70 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHH-TC-EEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCC
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHh-Cc-EEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 34666667766776667777777777664 44 444443220 011 1235667777888888888765
No 45
>4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A
Probab=20.31 E-value=95 Score=25.43 Aligned_cols=33 Identities=15% Similarity=0.408 Sum_probs=18.7
Q ss_pred CCcEEEEEeCCCCCchHHHHHHHHHHHHHHHcCC
Q 025850 125 DKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGY 158 (247)
Q Consensus 125 ~~~aVLLVaHGSr~p~a~~~l~~la~~L~~r~~~ 158 (247)
....+||+.||.........+..+++.|.++ ++
T Consensus 54 ~~~p~Vl~~HG~g~~~~~~~~~~~a~~la~~-Gy 86 (259)
T 4ao6_A 54 SSDRLVLLGHGGTTHKKVEYIEQVAKLLVGR-GI 86 (259)
T ss_dssp CCSEEEEEEC--------CHHHHHHHHHHHT-TE
T ss_pred CCCCEEEEeCCCcccccchHHHHHHHHHHHC-CC
Confidence 3457899999976433334577888888876 54
No 46
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=20.03 E-value=3e+02 Score=23.14 Aligned_cols=65 Identities=9% Similarity=0.086 Sum_probs=42.6
Q ss_pred EEEEEeCCCCCchHHHHHHHHHHHHHHHcCCceEEEEEeccCCCCHHHHHHHHHHcCCCeEEEeecc
Q 025850 128 GVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFF 194 (247)
Q Consensus 128 aVLLVaHGSr~p~a~~~l~~la~~L~~r~~~~~V~~AFLE~a~PSL~eaL~~L~a~G~~~VvVVPlF 194 (247)
.|-++.....++-....+..+.+.+++. ++ .+.++..........+.++.+.+++++-|++.|..
T Consensus 64 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~-g~-~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~ 128 (339)
T 3h5o_A 64 TVLVLIPSLANTVFLETLTGIETVLDAA-GY-QMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGLS 128 (339)
T ss_dssp EEEEEESCSTTCTTHHHHHHHHHHHHHT-TC-EEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHC-CC-EEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 4555555566677777777887777764 55 56665544222234456777888899999998853
No 47
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=20.02 E-value=2.7e+02 Score=23.35 Aligned_cols=68 Identities=10% Similarity=0.063 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHcCCceEEEEEecc-CC-CCHHHHHHHHHHcCCCeEEEeeccccCcccccccHHHHHHHHHHhCCCcc
Q 025850 143 LMLKQFVAMFREKTGYLIVEPAHMEL-AE-PSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQDIPSLTAEAAKEHPGVP 220 (247)
Q Consensus 143 ~~l~~la~~L~~r~~~~~V~~AFLE~-a~-PSL~eaL~~L~a~G~~~VvVVPlFL~~G~H~~~DIp~~l~~~~~~~pg~~ 220 (247)
..++.+.+..+ .+++ .+.+ .+. .+ ....+.++.+.+++++-|+++++.. . . .+.++..++|++.
T Consensus 24 ~~~~gi~~~~~-~~g~-~~~~--~~~~~~~~~~~~~l~~l~~~~vdgIi~~~~~~-----~-~----~~~~~~~~~p~~p 89 (296)
T 2hqb_A 24 KAYEGLLNIHS-NLDV-DVVL--EEGVNSEQKAHRRIKELVDGGVNLIFGHGHAF-----A-E----YFSTIHNQYPDVH 89 (296)
T ss_dssp HHHHHHHHHHH-HSCC-EEEE--ECCCCSHHHHHHHHHHHHHTTCCEEEECSTHH-----H-H----HHHTTTTSCTTSE
T ss_pred HHHHHHHHHHH-HhCC-eEEE--EeCCCCHHHHHHHHHHHHHCCCCEEEEcCHhH-----H-H----HHHHHHHHCCCCE
Confidence 34445544444 4454 3433 331 11 2345678888889999888875421 1 1 1233334567776
Q ss_pred EEEc
Q 025850 221 YIVT 224 (247)
Q Consensus 221 I~va 224 (247)
+.+.
T Consensus 90 ~v~i 93 (296)
T 2hqb_A 90 FVSF 93 (296)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6554
Done!