Query 025851
Match_columns 247
No_of_seqs 228 out of 1856
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 10:15:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025851.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025851hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1712 Adenine phosphoribosyl 100.0 1.4E-48 3.1E-53 323.1 15.4 174 74-247 4-180 (183)
2 PLN02293 adenine phosphoribosy 100.0 1.9E-37 4.2E-42 266.1 20.5 174 74-247 10-183 (187)
3 COG0503 Apt Adenine/guanine ph 100.0 1.6E-33 3.4E-38 240.4 18.0 171 76-246 3-175 (179)
4 PRK02304 adenine phosphoribosy 100.0 4.5E-32 9.8E-37 229.7 18.9 171 77-247 2-172 (175)
5 TIGR01090 apt adenine phosphor 100.0 4.5E-32 9.7E-37 228.6 18.1 167 81-247 1-168 (169)
6 TIGR01744 XPRTase xanthine pho 100.0 7.4E-30 1.6E-34 219.9 17.5 167 75-246 2-176 (191)
7 PRK09219 xanthine phosphoribos 100.0 1.2E-29 2.6E-34 218.2 17.0 168 75-246 2-176 (189)
8 PRK12560 adenine phosphoribosy 100.0 5.4E-29 1.2E-33 213.7 17.7 164 78-246 3-174 (187)
9 TIGR01743 purR_Bsub pur operon 100.0 1.6E-27 3.4E-32 214.7 17.1 166 72-246 80-248 (268)
10 PRK09213 pur operon repressor; 100.0 1.4E-27 3E-32 215.4 15.8 172 66-246 75-250 (271)
11 PRK13810 orotate phosphoribosy 99.9 2.9E-26 6.2E-31 197.0 15.5 139 93-246 40-180 (187)
12 PRK08558 adenine phosphoribosy 99.9 3.3E-25 7.2E-30 196.8 17.3 161 79-247 70-236 (238)
13 PRK13809 orotate phosphoribosy 99.9 1.2E-24 2.6E-29 189.6 16.2 168 66-246 2-176 (206)
14 PRK07322 adenine phosphoribosy 99.9 1.8E-23 3.9E-28 178.0 17.6 153 81-234 8-165 (178)
15 TIGR00336 pyrE orotate phospho 99.9 4.4E-23 9.6E-28 174.7 14.1 137 97-247 24-169 (173)
16 PRK13812 orotate phosphoribosy 99.9 6.3E-23 1.4E-27 174.7 14.7 134 97-247 31-166 (176)
17 PRK13811 orotate phosphoribosy 99.9 8.2E-23 1.8E-27 172.9 14.8 131 97-246 30-162 (170)
18 PRK02277 orotate phosphoribosy 99.9 1.4E-22 3E-27 175.5 15.6 145 92-247 49-195 (200)
19 PRK06031 phosphoribosyltransfe 99.9 1.4E-22 3.1E-27 179.5 15.4 151 81-238 42-202 (233)
20 PRK05500 bifunctional orotidin 99.9 2.4E-22 5.1E-27 193.7 15.2 144 88-246 302-451 (477)
21 PRK00455 pyrE orotate phosphor 99.9 9.6E-22 2.1E-26 170.1 15.2 135 97-246 33-171 (202)
22 TIGR01367 pyrE_Therm orotate p 99.9 1.3E-21 2.8E-26 168.1 15.7 131 97-246 27-160 (187)
23 COG0461 PyrE Orotate phosphori 99.8 1.2E-19 2.7E-24 157.1 14.4 144 88-246 18-170 (201)
24 COG0856 Orotate phosphoribosyl 99.8 7.5E-19 1.6E-23 148.0 13.3 142 93-247 50-196 (203)
25 PF00156 Pribosyltran: Phospho 99.8 1E-18 2.2E-23 138.0 11.6 122 103-226 2-125 (125)
26 PRK09177 xanthine-guanine phos 99.6 8.2E-15 1.8E-19 122.5 12.2 112 104-230 8-120 (156)
27 PRK09162 hypoxanthine-guanine 99.6 1.5E-14 3.2E-19 123.5 13.6 118 104-229 15-137 (181)
28 TIGR01203 HGPRTase hypoxanthin 99.6 2.8E-14 6E-19 120.4 13.8 116 105-230 2-125 (166)
29 TIGR00201 comF comF family pro 99.6 5.6E-15 1.2E-19 126.6 8.8 119 106-226 56-189 (190)
30 PLN02238 hypoxanthine phosphor 99.6 3.6E-14 7.8E-19 122.1 13.7 120 101-230 7-138 (189)
31 COG1040 ComFC Predicted amidop 99.6 3.5E-15 7.5E-20 131.7 7.4 123 105-228 88-223 (225)
32 PRK07199 phosphoribosylpyropho 99.6 1.7E-14 3.7E-19 132.3 12.2 107 126-244 160-266 (301)
33 PRK00934 ribose-phosphate pyro 99.6 3.1E-14 6.8E-19 129.6 12.1 103 127-243 155-258 (285)
34 PRK15423 hypoxanthine phosphor 99.5 7.2E-14 1.6E-18 119.3 12.7 120 101-230 4-133 (178)
35 PRK02269 ribose-phosphate pyro 99.5 7.1E-14 1.5E-18 129.2 12.9 107 127-244 166-272 (320)
36 PRK08525 amidophosphoribosyltr 99.5 5.9E-14 1.3E-18 135.0 11.6 134 109-244 259-395 (445)
37 PRK05205 bifunctional pyrimidi 99.5 2E-13 4.4E-18 115.9 12.0 117 103-229 4-136 (176)
38 PRK01259 ribose-phosphate pyro 99.5 2.3E-13 5E-18 125.3 12.3 101 126-239 158-258 (309)
39 PRK04923 ribose-phosphate pyro 99.5 4.3E-13 9.4E-18 124.0 12.5 106 126-244 166-272 (319)
40 PRK11595 DNA utilization prote 99.5 3.2E-13 6.9E-18 119.0 10.9 121 105-227 84-225 (227)
41 PRK03092 ribose-phosphate pyro 99.5 5.7E-13 1.2E-17 122.5 12.2 106 127-243 149-255 (304)
42 PTZ00149 hypoxanthine phosphor 99.5 9.9E-13 2.1E-17 117.2 13.3 131 100-230 52-191 (241)
43 PRK02458 ribose-phosphate pyro 99.5 3.7E-13 8.1E-18 124.6 11.0 105 127-245 170-274 (323)
44 PTZ00271 hypoxanthine-guanine 99.5 1.6E-12 3.5E-17 113.8 14.1 119 103-230 25-159 (211)
45 COG0462 PrsA Phosphoribosylpyr 99.4 6.9E-13 1.5E-17 121.7 11.6 103 128-242 165-267 (314)
46 PRK00553 ribose-phosphate pyro 99.4 1.1E-12 2.4E-17 122.0 12.7 99 127-238 169-267 (332)
47 COG0634 Hpt Hypoxanthine-guani 99.4 3.3E-12 7.2E-17 108.2 13.2 122 100-230 6-134 (178)
48 TIGR01251 ribP_PPkin ribose-ph 99.4 1.5E-12 3.3E-17 119.7 12.1 103 126-241 159-262 (308)
49 PRK07349 amidophosphoribosyltr 99.4 1.1E-12 2.5E-17 127.6 10.2 114 109-223 296-411 (500)
50 PRK06827 phosphoribosylpyropho 99.4 3.1E-12 6.7E-17 120.9 12.4 104 126-238 207-312 (382)
51 PRK09246 amidophosphoribosyltr 99.4 8.7E-13 1.9E-17 128.6 8.5 115 109-226 276-395 (501)
52 PLN02440 amidophosphoribosyltr 99.4 1.6E-12 3.4E-17 126.2 10.2 112 112-226 262-377 (479)
53 PRK05793 amidophosphoribosyltr 99.4 2.1E-12 4.7E-17 125.0 10.9 117 113-230 276-394 (469)
54 PRK09123 amidophosphoribosyltr 99.4 5.7E-12 1.2E-16 122.3 12.1 112 109-224 279-395 (479)
55 PRK06781 amidophosphoribosyltr 99.3 2E-12 4.4E-17 125.2 8.5 112 109-224 267-383 (471)
56 TIGR01134 purF amidophosphorib 99.3 2.3E-12 5.1E-17 123.9 8.5 113 110-225 258-374 (442)
57 PLN02369 ribose-phosphate pyro 99.3 1.1E-11 2.4E-16 113.8 12.2 101 128-241 153-254 (302)
58 PRK07272 amidophosphoribosyltr 99.3 2.8E-12 6.2E-17 124.4 8.6 111 112-225 272-386 (484)
59 PLN02297 ribose-phosphate pyro 99.3 7.8E-12 1.7E-16 115.9 11.0 109 115-239 169-280 (326)
60 COG2236 Predicted phosphoribos 99.3 7.2E-12 1.6E-16 108.2 9.5 112 104-225 5-123 (192)
61 PRK02812 ribose-phosphate pyro 99.3 1.2E-11 2.6E-16 115.0 11.6 104 127-243 180-284 (330)
62 PRK07847 amidophosphoribosyltr 99.3 9.3E-12 2E-16 121.5 11.1 113 109-223 286-401 (510)
63 PTZ00145 phosphoribosylpyropho 99.3 1.7E-11 3.6E-16 117.4 11.9 106 127-245 280-391 (439)
64 PRK08341 amidophosphoribosyltr 99.3 1E-11 2.2E-16 119.5 10.4 112 109-224 255-369 (442)
65 PRK06388 amidophosphoribosyltr 99.3 1.2E-11 2.5E-16 119.9 10.8 110 111-224 277-391 (474)
66 PRK07631 amidophosphoribosyltr 99.3 7.4E-12 1.6E-16 121.3 8.1 112 110-225 268-384 (475)
67 PF14572 Pribosyl_synth: Phosp 99.2 3.5E-11 7.6E-16 103.1 7.8 119 127-245 4-139 (184)
68 COG0034 PurF Glutamine phospho 99.0 4.3E-10 9.2E-15 107.3 7.9 113 110-224 268-383 (470)
69 COG2065 PyrR Pyrimidine operon 99.0 3.3E-09 7.1E-14 89.2 11.3 116 104-229 5-137 (179)
70 PRK00129 upp uracil phosphorib 99.0 2.8E-09 6E-14 93.0 10.1 99 128-238 72-171 (209)
71 TIGR01091 upp uracil phosphori 98.9 7.7E-09 1.7E-13 90.1 9.8 97 128-238 70-169 (207)
72 KOG1448 Ribose-phosphate pyrop 98.9 6.5E-09 1.4E-13 94.5 9.4 122 102-239 143-264 (316)
73 KOG3367 Hypoxanthine-guanine p 98.7 6.8E-08 1.5E-12 82.0 9.5 129 97-230 28-166 (216)
74 COG1926 Predicted phosphoribos 98.7 8.9E-08 1.9E-12 83.5 10.2 118 109-227 9-162 (220)
75 KOG0572 Glutamine phosphoribos 98.6 3.3E-08 7.3E-13 92.6 5.0 137 81-223 251-390 (474)
76 PF15609 PRTase_2: Phosphoribo 98.0 0.0001 2.2E-09 63.7 12.6 143 92-234 14-167 (191)
77 PLN02541 uracil phosphoribosyl 98.0 1.3E-05 2.8E-10 71.9 7.4 51 186-238 154-206 (244)
78 PF14681 UPRTase: Uracil phosp 97.3 0.0023 5.1E-08 55.8 10.7 94 129-238 70-170 (207)
79 COG0035 Upp Uracil phosphoribo 97.3 0.00085 1.8E-08 58.9 7.5 96 129-238 73-172 (210)
80 KOG1503 Phosphoribosylpyrophos 96.2 0.07 1.5E-06 48.2 11.3 135 103-243 148-301 (354)
81 PF15610 PRTase_3: PRTase ComF 94.8 0.29 6.2E-06 44.7 10.0 41 178-219 128-168 (274)
82 KOG1377 Uridine 5'- monophosph 83.7 2.9 6.2E-05 37.9 5.9 116 97-229 64-192 (261)
83 KOG1017 Predicted uracil phosp 81.7 3.9 8.4E-05 36.2 5.8 43 187-229 187-231 (267)
84 PF13793 Pribosyltran_N: N-ter 80.6 26 0.00057 27.7 9.9 73 136-222 8-84 (116)
85 PRK04923 ribose-phosphate pyro 72.6 35 0.00075 31.8 9.7 73 135-221 13-89 (319)
86 PRK02812 ribose-phosphate pyro 71.2 48 0.001 31.1 10.4 74 134-221 27-104 (330)
87 COG3535 Uncharacterized conser 69.2 1.1E+02 0.0023 29.2 13.0 111 106-222 76-189 (357)
88 PTZ00145 phosphoribosylpyropho 67.3 56 0.0012 32.0 10.2 79 129-221 120-202 (439)
89 PLN02369 ribose-phosphate pyro 65.4 49 0.0011 30.5 9.1 68 139-220 2-73 (302)
90 PRK00934 ribose-phosphate pyro 63.8 65 0.0014 29.3 9.5 72 136-221 7-81 (285)
91 TIGR01251 ribP_PPkin ribose-ph 63.2 67 0.0015 29.5 9.6 71 136-220 8-83 (308)
92 PRK00553 ribose-phosphate pyro 62.0 97 0.0021 29.0 10.5 73 135-221 16-92 (332)
93 PRK02269 ribose-phosphate pyro 61.9 97 0.0021 28.8 10.4 73 135-221 12-88 (320)
94 PRK01259 ribose-phosphate pyro 60.9 62 0.0013 29.9 8.9 73 135-221 7-83 (309)
95 PRK07199 phosphoribosylpyropho 60.7 96 0.0021 28.6 10.1 74 135-222 9-85 (301)
96 PRK03092 ribose-phosphate pyro 57.9 68 0.0015 29.6 8.6 68 140-221 1-72 (304)
97 PRK12342 hypothetical protein; 57.8 33 0.00072 31.0 6.4 39 116-154 99-141 (254)
98 PF07726 AAA_3: ATPase family 55.2 86 0.0019 25.7 7.8 85 131-218 5-92 (131)
99 PF04392 ABC_sub_bind: ABC tra 52.9 1.4E+02 0.003 26.7 9.7 139 75-222 14-166 (294)
100 PRK02458 ribose-phosphate pyro 49.9 2.1E+02 0.0047 26.6 10.6 73 135-221 16-92 (323)
101 PRK03359 putative electron tra 49.3 65 0.0014 29.1 6.9 46 106-154 95-144 (256)
102 COG0462 PrsA Phosphoribosylpyr 49.2 79 0.0017 29.6 7.5 73 136-222 12-88 (314)
103 PF11382 DUF3186: Protein of u 48.3 46 0.00099 30.8 5.9 44 186-229 80-123 (308)
104 PLN02297 ribose-phosphate pyro 45.9 2.5E+02 0.0055 26.3 10.4 75 135-222 23-101 (326)
105 PRK12485 bifunctional 3,4-dihy 45.5 2.6E+02 0.0057 26.7 10.6 191 20-217 55-287 (369)
106 TIGR01650 PD_CobS cobaltochela 44.5 2.8E+02 0.006 26.1 12.3 106 104-213 47-159 (327)
107 cd00158 RHOD Rhodanese Homolog 44.5 51 0.0011 22.9 4.5 33 186-221 47-79 (89)
108 smart00450 RHOD Rhodanese Homo 43.4 45 0.00098 23.5 4.1 32 186-220 53-84 (100)
109 PF07931 CPT: Chloramphenicol 42.7 30 0.00065 29.4 3.4 47 188-237 82-129 (174)
110 PRK04195 replication factor C 41.6 1.5E+02 0.0032 28.9 8.6 114 100-220 12-134 (482)
111 KOG0733 Nuclear AAA ATPase (VC 41.4 27 0.00058 36.0 3.3 61 91-155 182-254 (802)
112 PRK08057 cobalt-precorrin-6x r 41.1 51 0.0011 29.6 4.9 38 122-159 186-225 (248)
113 cd01715 ETF_alpha The electron 40.9 58 0.0013 26.8 4.9 45 107-154 67-112 (168)
114 cd01529 4RHOD_Repeats Member o 40.9 49 0.0011 24.2 4.1 31 187-220 54-84 (96)
115 cd01444 GlpE_ST GlpE sulfurtra 40.8 46 0.001 24.0 3.9 32 186-220 53-84 (96)
116 PRK10618 phosphotransfer inter 38.6 1.9E+02 0.0041 30.8 9.3 34 186-222 686-719 (894)
117 cd01714 ETF_beta The electron 37.7 59 0.0013 28.0 4.6 45 106-153 91-139 (202)
118 PF01488 Shikimate_DH: Shikima 36.1 64 0.0014 25.7 4.3 37 187-230 10-46 (135)
119 COG0784 CheY FOG: CheY-like re 35.8 90 0.002 23.2 4.9 26 188-216 4-29 (130)
120 COG0031 CysK Cysteine synthase 33.1 1.9E+02 0.004 27.0 7.3 146 76-230 123-295 (300)
121 cd01985 ETF The electron trans 32.7 78 0.0017 26.2 4.5 46 106-154 74-120 (181)
122 PRK01021 lpxB lipid-A-disaccha 31.8 1E+02 0.0022 31.6 5.7 42 113-154 297-341 (608)
123 PF01012 ETF: Electron transfe 30.9 55 0.0012 26.7 3.2 46 106-154 73-119 (164)
124 TIGR00715 precor6x_red precorr 30.5 92 0.002 28.1 4.8 38 122-159 193-233 (256)
125 PF04723 GRDA: Glycine reducta 29.7 96 0.0021 25.8 4.3 38 187-226 3-40 (150)
126 PRK06827 phosphoribosylpyropho 29.5 5.1E+02 0.011 24.8 10.2 42 179-221 67-126 (382)
127 COG4273 Uncharacterized conser 27.5 98 0.0021 25.4 3.9 38 187-229 65-102 (135)
128 PRK04311 selenocysteine syntha 27.2 1.7E+02 0.0037 28.7 6.4 113 90-222 81-198 (464)
129 PF02875 Mur_ligase_C: Mur lig 26.5 92 0.002 22.7 3.4 35 190-224 12-48 (91)
130 PF07728 AAA_5: AAA domain (dy 26.3 2.3E+02 0.0051 21.8 6.0 85 129-215 3-91 (139)
131 cd06336 PBP1_ABC_ligand_bindin 26.3 3.3E+02 0.0071 24.5 7.8 48 105-155 53-100 (347)
132 TIGR00215 lpxB lipid-A-disacch 25.8 1.6E+02 0.0034 27.7 5.7 40 116-155 79-119 (385)
133 TIGR01426 MGT glycosyltransfer 25.7 2E+02 0.0043 26.6 6.3 35 119-155 85-119 (392)
134 cd01518 RHOD_YceA Member of th 25.4 1.3E+02 0.0029 22.0 4.2 31 187-220 59-89 (101)
135 KOG0743 AAA+-type ATPase [Post 25.1 1.1E+02 0.0024 30.2 4.5 93 90-201 193-298 (457)
136 PF10865 DUF2703: Domain of un 25.0 87 0.0019 25.2 3.2 31 198-228 18-52 (120)
137 cd01523 RHOD_Lact_B Member of 24.8 1.3E+02 0.0029 22.0 4.1 30 186-218 58-87 (100)
138 cd06388 PBP1_iGluR_AMPA_GluR4 24.7 3.7E+02 0.0081 25.0 8.0 102 116-221 54-156 (371)
139 PF12646 DUF3783: Domain of un 24.4 1.7E+02 0.0036 20.2 4.2 35 191-227 2-36 (58)
140 TIGR01809 Shik-DH-AROM shikima 24.1 1.4E+02 0.003 27.0 4.7 32 187-222 123-154 (282)
141 cd06356 PBP1_Amide_Urea_BP_lik 23.5 4.3E+02 0.0093 23.7 7.9 111 105-222 49-166 (334)
142 PF05152 DUF705: Protein of un 22.8 5.5E+02 0.012 24.0 8.3 120 91-227 119-253 (297)
143 PF02571 CbiJ: Precorrin-6x re 22.8 1.4E+02 0.003 26.7 4.5 38 122-159 190-229 (249)
144 CHL00073 chlN photochlorophyll 22.6 5.3E+02 0.011 25.4 8.7 33 189-223 193-225 (457)
145 PF02684 LpxB: Lipid-A-disacch 21.4 2.1E+02 0.0046 27.3 5.6 40 112-151 68-108 (373)
146 KOG0731 AAA+-type ATPase conta 21.4 1.4E+02 0.0031 31.4 4.7 64 92-155 304-375 (774)
147 TIGR03492 conserved hypothetic 21.2 1.6E+02 0.0035 27.9 4.8 60 91-154 55-118 (396)
148 cd01519 RHOD_HSP67B2 Member of 21.1 1.6E+02 0.0035 21.5 3.9 32 187-221 64-95 (106)
149 COG2086 FixA Electron transfer 20.5 3.6E+02 0.0079 24.5 6.7 58 95-155 83-144 (260)
150 COG0371 GldA Glycerol dehydrog 20.1 2E+02 0.0043 27.5 5.1 40 116-155 74-114 (360)
No 1
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.4e-48 Score=323.09 Aligned_cols=174 Identities=69% Similarity=1.164 Sum_probs=170.5
Q ss_pred CChHHHHHhcccccCCCCCCCCceEEechhhccCHHHHHHHHHHHHHHhcc---CCccEEEecCCcchhHHHHHHHHhCC
Q 025851 74 QDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKD---KNISVVAGIEARGFIFGPPIALAIGA 150 (247)
Q Consensus 74 ~~~~~~~l~~~ir~~p~fp~~gi~f~Di~~ll~dp~~~~~l~~~La~~~~~---~~iDvVVgve~rGf~lA~~LA~~Lg~ 150 (247)
.|++++.|+.+||++||||++||+|+|+++++.||.+|+.+++.|++++++ .++|+|+|+|+|||.|++.+|.++|+
T Consensus 4 ~d~~~~~ik~~ir~~pdFPk~GI~F~Di~pll~dP~af~~lidlf~~h~~~~~~~~Id~iaGlEaRGFLFGP~iAlalG~ 83 (183)
T KOG1712|consen 4 ADPRLKYIKTAIRVVPDFPKKGIMFQDITPLLLDPKAFKKLIDLFVDHYRETFEMKIDVIAGLEARGFLFGPSIALALGA 83 (183)
T ss_pred ccHHHHHHHHhheeCCCCCCCceehhhhhhhhcCHHHHHHHHHHHHHHHHHHhcCcceEEEeeeecceecCcHHHHHhCC
Confidence 589999999999999999999999999999999999999999999999988 67999999999999999999999999
Q ss_pred CeEEeeccCCCCCceeeeeeeeccccceeEEeecccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEeccC
Q 025851 151 KFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 230 (247)
Q Consensus 151 p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~~ 230 (247)
+|+++||++|+||++++.+|.+|||++.|+|+++++.+|+||+||||+++||+|+.+|.+++++.|+++++|+|++++++
T Consensus 84 ~fVPiRK~gKLPG~~i~~~Y~lEYg~d~~Emq~~Ai~~g~rvvvVDDllATGGTl~AA~~Ll~r~ga~vvE~~~vieL~~ 163 (183)
T KOG1712|consen 84 GFVPIRKPGKLPGEVISESYELEYGEDRFEMQKGAIKPGQRVVVVDDLLATGGTLAAATELLERVGAEVVECACVIELPE 163 (183)
T ss_pred CeeecccCCCCCCceeEEEEeeecCccceeeeccccCCCCeEEEEechhhcCccHHHHHHHHHHhccEEEEEEEEEEccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCcccccC
Q 025851 231 LKGRERLGEKPLFVLVS 247 (247)
Q Consensus 231 ~~grekL~~~pv~sL~~ 247 (247)
++||+||.++|+++|++
T Consensus 164 LkGr~kL~~~pl~~Ll~ 180 (183)
T KOG1712|consen 164 LKGREKLKGKPLFSLLE 180 (183)
T ss_pred cCCccccCCCccEEEee
Confidence 99999999999999974
No 2
>PLN02293 adenine phosphoribosyltransferase
Probab=100.00 E-value=1.9e-37 Score=266.11 Aligned_cols=174 Identities=83% Similarity=1.327 Sum_probs=165.7
Q ss_pred CChHHHHHhcccccCCCCCCCCceEEechhhccCHHHHHHHHHHHHHHhccCCccEEEecCCcchhHHHHHHHHhCCCeE
Q 025851 74 QDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFV 153 (247)
Q Consensus 74 ~~~~~~~l~~~ir~~p~fp~~gi~f~Di~~ll~dp~~~~~l~~~La~~~~~~~iDvVVgve~rGf~lA~~LA~~Lg~p~v 153 (247)
.||+++.|++.+|++||||++|+.|+|++.++.+|+.++.+++.|++++++.++|+|+|++.+|+++|..+|..+|+|++
T Consensus 10 ~~~~~~~l~~~i~~~~~~p~~gi~f~D~~~l~~~p~~~~~~~~~l~~~~~~~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v 89 (187)
T PLN02293 10 GDPRLQGISSAIRVVPDFPKPGIMFQDITTLLLDPKAFKDTIDLFVERYRDMGISVVAGIEARGFIFGPPIALAIGAKFV 89 (187)
T ss_pred CChhHHHHHHhCccCCCCCcCCcEEEECHHHhhCHHHHHHHHHHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHCCCEE
Confidence 69999999999999999999999999999999999999999999999998878999999999999999999999999999
Q ss_pred EeeccCCCCCceeeeeeeeccccceeEEeecccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEeccCccc
Q 025851 154 PMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKG 233 (247)
Q Consensus 154 ~iRK~~kl~~~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~~~~g 233 (247)
++||.+|.++++..+.|..+|+++.++++.+.+.+|++||||||+++||+|+.+++++++++|+++++++++++.++.+|
T Consensus 90 ~~rK~~k~~~~~~~~~~~~~~g~~~l~l~~~~i~~G~rVlIVDDvitTG~T~~~~~~~l~~~Ga~~v~~~~~~~~~~~~g 169 (187)
T PLN02293 90 PLRKPGKLPGEVISEEYVLEYGTDCLEMHVGAVEPGERALVIDDLIATGGTLCAAINLLERAGAEVVECACVIELPELKG 169 (187)
T ss_pred EEEecCCCCCceEEEEEeccCCceEEEEEcCccCCCCEEEEEeccccchHHHHHHHHHHHHCCCEEEEEEEEEEcCCccH
Confidence 99999999988888888888888888888777779999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcccccC
Q 025851 234 RERLGEKPLFVLVS 247 (247)
Q Consensus 234 rekL~~~pv~sL~~ 247 (247)
+++|.+.|+++|++
T Consensus 170 ~~~l~~~~~~sl~~ 183 (187)
T PLN02293 170 REKLNGKPLFVLVE 183 (187)
T ss_pred HHHhcCCceEEEEe
Confidence 99999999999873
No 3
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.6e-33 Score=240.38 Aligned_cols=171 Identities=50% Similarity=0.798 Sum_probs=161.0
Q ss_pred hHHHHHhcccccCCCCCCCCceEEechhhccCHHHHHHHHHHHHHHhccCCccEEEecCCcchhHHHHHHHHhCCCeEEe
Q 025851 76 PRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPM 155 (247)
Q Consensus 76 ~~~~~l~~~ir~~p~fp~~gi~f~Di~~ll~dp~~~~~l~~~La~~~~~~~iDvVVgve~rGf~lA~~LA~~Lg~p~v~i 155 (247)
...+.|++.++..|+||++|+.|.|.+.++.++.++...++.|++.+.+.++|.|+|++++||++|..+|.+||+||+++
T Consensus 3 ~~~~~L~~~i~~~~~~~~~g~~f~d~~~~~~~~~~~~~~i~~~~~~~~~~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 3 ELMELLKDSIREIPDFPKGGILFVDITLLLGDPELLAKLIDELAERYKDDGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred hHHHHHHHHHhhcccccCCCceEEecchhhcCcHHHHHHHHHHHHHhcccCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 45678999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred eccCCCCCceeeeeeeeccccceeEEeecccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEeccCccccc
Q 025851 156 RKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRE 235 (247)
Q Consensus 156 RK~~kl~~~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~~~~gre 235 (247)
||++|++...+...|..+|+...++++.+.+.+|+|||||||+++||+|+.++.++++++|++++++++++++++.+|+.
T Consensus 83 RK~~kl~~~~~~~~~~~~~~~~~l~~~~~~l~~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga~vvg~~~~ie~~~~~gr~ 162 (179)
T COG0503 83 RKKGKLPEESVVETYYLEYGSETLELHKDALKPGDRVLIVDDLLATGGTALALIELLEQAGAEVVGAAFVIELGELDGRK 162 (179)
T ss_pred EecCCCCCcceeEEEEEeccceEEEEEhhhCCCCCEEEEEecchhcChHHHHHHHHHHHCCCEEEEEEEEEEcCccccch
Confidence 99999998888888888888788999999888999999999999999999999999999999999999999999999999
Q ss_pred ccCC--CCccccc
Q 025851 236 RLGE--KPLFVLV 246 (247)
Q Consensus 236 kL~~--~pv~sL~ 246 (247)
++.. .|+++|.
T Consensus 163 ~l~~~~~~v~~l~ 175 (179)
T COG0503 163 KLEDDGLPVFSLV 175 (179)
T ss_pred hhccCCceEEEEE
Confidence 9876 7777764
No 4
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=100.00 E-value=4.5e-32 Score=229.68 Aligned_cols=171 Identities=60% Similarity=1.006 Sum_probs=155.1
Q ss_pred HHHHHhcccccCCCCCCCCceEEechhhccCHHHHHHHHHHHHHHhccCCccEEEecCCcchhHHHHHHHHhCCCeEEee
Q 025851 77 RIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMR 156 (247)
Q Consensus 77 ~~~~l~~~ir~~p~fp~~gi~f~Di~~ll~dp~~~~~l~~~La~~~~~~~iDvVVgve~rGf~lA~~LA~~Lg~p~v~iR 156 (247)
.+++|+...+.+|.||.+++.|.|+++++.+|+.++.+++.+++++.+.++|+|+|++.+|+++|..+|..+++|++.+|
T Consensus 2 ~~~~l~~~~~~~~~~~~~~~~~~d~~~l~~~p~~~~~~~~~la~~~~~~~~d~Ivgv~~~Gi~~a~~la~~l~~p~~~~r 81 (175)
T PRK02304 2 MLEDLKSSIRTIPDFPKPGILFRDITPLLADPEAFREVIDALVERYKDADIDKIVGIEARGFIFGAALAYKLGIGFVPVR 81 (175)
T ss_pred hHHHHHHhhccCCCCCCCCcEEEeChhHhcCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEE
Confidence 46789999999999999999999999999999999999999999998778999999999999999999999999999999
Q ss_pred ccCCCCCceeeeeeeeccccceeEEeecccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEeccCcccccc
Q 025851 157 KPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRER 236 (247)
Q Consensus 157 K~~kl~~~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~~~~grek 236 (247)
|..+.++...+..|+.+++++.+++..+.+.+|++|||||||+|||+|+.+++++|+++|++++++++++++++.+|.++
T Consensus 82 k~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~g~~VLIVDDivtTG~Tl~~~~~~l~~~Ga~~v~v~vl~~~~~~~g~~~ 161 (175)
T PRK02304 82 KPGKLPRETISESYELEYGTDTLEIHKDAIKPGDRVLIVDDLLATGGTLEAAIKLLERLGAEVVGAAFVIELPDLGGREK 161 (175)
T ss_pred cCCCCCCceEeEEEecccCceEEEEchhhcCCCCEEEEEeCCccccHHHHHHHHHHHHcCCEEEEEEEEEEcccccchhh
Confidence 88776666666667666666777776666689999999999999999999999999999999999999999998788999
Q ss_pred cCCCCcccccC
Q 025851 237 LGEKPLFVLVS 247 (247)
Q Consensus 237 L~~~pv~sL~~ 247 (247)
+.++|++||++
T Consensus 162 l~~~~~~sl~~ 172 (175)
T PRK02304 162 LEGYPVKSLVK 172 (175)
T ss_pred cCCCceEEEEE
Confidence 98899999863
No 5
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=100.00 E-value=4.5e-32 Score=228.65 Aligned_cols=167 Identities=56% Similarity=0.937 Sum_probs=150.5
Q ss_pred HhcccccCCCCCCCCceEEechhhccCHHHHHHHHHHHHHHhccCCccEEEecCCcchhHHHHHHHHhCCCeEEeeccCC
Q 025851 81 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKK 160 (247)
Q Consensus 81 l~~~ir~~p~fp~~gi~f~Di~~ll~dp~~~~~l~~~La~~~~~~~iDvVVgve~rGf~lA~~LA~~Lg~p~v~iRK~~k 160 (247)
|+.+++.+|+||.||+.|.|++.++.||+.++.+++.|++++.+.++|+|+|++.|||++|..+|..+++|++.++|.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~d~~~~l~~p~~~~~~~~~la~~i~~~~~d~ivgi~~~G~~~A~~la~~L~~~~~~i~k~~~ 80 (169)
T TIGR01090 1 LKQSIRSIPDFPKKGILFRDITPLLNNPELFRFLIDLLVERYKDANIDYIVGPEARGFIFGAALAYKLGVGFVPVRKPGK 80 (169)
T ss_pred ChhhcccCCCCCCCCceeEeChhhhcCHHHHHHHHHHHHHHhccCCCCEEEeehhccHHHHHHHHHHHCCCEEEEEeCCC
Confidence 35678889999999999999999999999999999999999988789999999999999999999999999999988877
Q ss_pred CCCceeeeeeeeccccceeEEeecccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEeccCcccccccCC-
Q 025851 161 LPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGE- 239 (247)
Q Consensus 161 l~~~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~~~~grekL~~- 239 (247)
.++......|+.+++.+.+++......+|++|||||||+|||+|+.++++.|+++|++++++++++++.+.+|.+.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDIitTG~Tl~~a~~~L~~~Ga~~v~~~~l~~~~~~~g~~~i~~~ 160 (169)
T TIGR01090 81 LPGETISASYDLEYGKDQLEIHKDAIKPGQRVLIVDDLLATGGTAEATDELIRKLGGEVVEAAFLIELKDLNGRAKLEPN 160 (169)
T ss_pred CCCceeeeEEeeccCceEEEEehhhcCCcCEEEEEeccccchHHHHHHHHHHHHcCCEEEEEEEEEEccccChHHHhccC
Confidence 7777777777666776667776555679999999999999999999999999999999999999999998889999966
Q ss_pred CCcccccC
Q 025851 240 KPLFVLVS 247 (247)
Q Consensus 240 ~pv~sL~~ 247 (247)
+|++||++
T Consensus 161 ~~~~sl~~ 168 (169)
T TIGR01090 161 VPVFSLLE 168 (169)
T ss_pred CceEEEEe
Confidence 89999863
No 6
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=99.97 E-value=7.4e-30 Score=219.86 Aligned_cols=167 Identities=23% Similarity=0.300 Sum_probs=144.9
Q ss_pred ChHHHHHhcccccCCCCCCCCceEEec-hhhccCHHHHHHHHHHHHHHhccCCccEEEecCCcchhHHHHHHHHhCCCeE
Q 025851 75 DPRIAGISSAIRVIPDFPKPGIMFQDI-TTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFV 153 (247)
Q Consensus 75 ~~~~~~l~~~ir~~p~fp~~gi~f~Di-~~ll~dp~~~~~l~~~La~~~~~~~iDvVVgve~rGf~lA~~LA~~Lg~p~v 153 (247)
++..++|.+.-|++|+ |++|.|. .+...||+.++.+++.|++++.+.++|+|++++++||++|..+|.++|+|++
T Consensus 2 ~~l~~~~~~~~~~~~~----~~i~~~~~~~~~~~p~~l~~v~~~l~~~~~~~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v 77 (191)
T TIGR01744 2 ELLKQKIKEEGVVLPG----GILKVDSFLNHQIDPKLMQEVGEEFARRFADDGITKIVTIEASGIAPAIMTGLKLGVPVV 77 (191)
T ss_pred hHHHHHHhcCCEEcCC----CEEEEehhhccccCHHHHHHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEE
Confidence 4678999999999999 9887664 3345799999999999999998888999999999999999999999999999
Q ss_pred EeeccCCCCC-----ceeeeeeeeccccceeEEeecccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEec
Q 025851 154 PMRKPKKLPG-----EVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIEL 228 (247)
Q Consensus 154 ~iRK~~kl~~-----~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~ 228 (247)
++||+++.+. ++...+|.. |+...++++.+.+.+|+|||||||++|||+|+.+++++++++||+++++++++++
T Consensus 78 ~vRK~~k~~~~~~~~~~~~~s~~~-~~~~~l~i~~~~l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vvgv~~lvd~ 156 (191)
T TIGR01744 78 FARKKKPLTLTDNLLTASVHSFTK-QTTSTVAVSGEFLSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIAGIGIVIEK 156 (191)
T ss_pred EEEeCCCCCCCCcceEEEEEEeec-CccEEEEEEHHhCCCcCEEEEEEehhccChHHHHHHHHHHHCCCEEEEEEEEEEe
Confidence 9999887654 222234433 4556788887777899999999999999999999999999999999999999999
Q ss_pred cCcccccccC--CCCccccc
Q 025851 229 PELKGRERLG--EKPLFVLV 246 (247)
Q Consensus 229 ~~~~grekL~--~~pv~sL~ 246 (247)
.+.+|+++|. ++|++||+
T Consensus 157 ~~~~g~~~l~~~gvpv~sL~ 176 (191)
T TIGR01744 157 SFQNGRQELVELGYRVESLA 176 (191)
T ss_pred cCccHHHHHHhcCCcEEEEE
Confidence 9888999985 58999886
No 7
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=99.97 E-value=1.2e-29 Score=218.21 Aligned_cols=168 Identities=26% Similarity=0.319 Sum_probs=143.1
Q ss_pred ChHHHHHhcccccCCCCCCCCceEE-echhhccCHHHHHHHHHHHHHHhccCCccEEEecCCcchhHHHHHHHHhCCCeE
Q 025851 75 DPRIAGISSAIRVIPDFPKPGIMFQ-DITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFV 153 (247)
Q Consensus 75 ~~~~~~l~~~ir~~p~fp~~gi~f~-Di~~ll~dp~~~~~l~~~La~~~~~~~iDvVVgve~rGf~lA~~LA~~Lg~p~v 153 (247)
++..++|++.-|++|+ |++|. |..++..||+.++.+++.|++.+.+.++|+|+|++++||++|..+|.++|+|++
T Consensus 2 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~P~~l~~i~~~la~~~~~~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v 77 (189)
T PRK09219 2 KLLEERILKDGKVLSG----NILKVDSFLNHQVDPKLMNEIGKEFARRFKDEGITKILTIEASGIAPAVMAALALGVPVV 77 (189)
T ss_pred hHHHHHHhcCCEEcCC----CEEEEhhhhccccCHHHHHHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEE
Confidence 4678999999999999 87632 224444999999999999999999888999999999999999999999999999
Q ss_pred EeeccCCCC--Cceeeeee-eecc-ccceeEEeecccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEecc
Q 025851 154 PMRKPKKLP--GEVISEEY-SLEY-GKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELP 229 (247)
Q Consensus 154 ~iRK~~kl~--~~~~s~~y-~~e~-g~~~~~l~~~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~ 229 (247)
++||++|.+ ++.+..+| ..+. +...++++.+.+.+|+|||||||+++||+|+.+++++++++|++++++++++++.
T Consensus 78 ~vRK~~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~vvgv~~lvd~~ 157 (189)
T PRK09219 78 FAKKKKSLTLTDDVYTATVYSFTKQVTSTVSVSKKFLSEGDRVLIIDDFLANGQAALGLIDIIEQAGAKVAGIGIVIEKS 157 (189)
T ss_pred EEEECCCCCCCCceEEEEEeeeccCceEEEEEEhhhCCCCCEEEEEeehhhcChHHHHHHHHHHHCCCEEEEEEEEEEcc
Confidence 999988775 45444332 1111 3346888888888999999999999999999999999999999999999999998
Q ss_pred CcccccccC--CCCccccc
Q 025851 230 ELKGRERLG--EKPLFVLV 246 (247)
Q Consensus 230 ~~~grekL~--~~pv~sL~ 246 (247)
+.+|+++|. ++|+++|+
T Consensus 158 ~~~g~~~l~~~g~~~~sl~ 176 (189)
T PRK09219 158 FQDGRKLLEEKGYRVESLA 176 (189)
T ss_pred CccHHHHHHhcCCcEEEEE
Confidence 778998875 47888876
No 8
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=99.96 E-value=5.4e-29 Score=213.71 Aligned_cols=164 Identities=26% Similarity=0.389 Sum_probs=138.3
Q ss_pred HHHHhcccccCCCCCCCCc--eEEechhhccCHHHHHHHHHHHHHHhccCCccEEEecCCcchhHHHHHHHHhCCCeEEe
Q 025851 78 IAGISSAIRVIPDFPKPGI--MFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPM 155 (247)
Q Consensus 78 ~~~l~~~ir~~p~fp~~gi--~f~Di~~ll~dp~~~~~l~~~La~~~~~~~iDvVVgve~rGf~lA~~LA~~Lg~p~v~i 155 (247)
++.++..+|++|+||++|+ .|.|+++++. |+.++.+++.|++.+ +.++|+|+|++.+|+++|..+|..+++|++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~D~~~~l~-P~~l~~~~~~l~~~~-~~~~D~Ivg~e~~Gi~lA~~vA~~l~~p~~~~ 80 (187)
T PRK12560 3 LKNLYKNARVVNSGKALTTVNEFTDQLPALR-PKVLKETAKEIIKYI-DKDIDKIVTEEDKGAPLATPVSLLSGKPLAMA 80 (187)
T ss_pred hHHHHhhCCccCCCCCCCcceeEEeChhhcC-HHHHHHHHHHHHHHh-CCCCCEEEEEccccHHHHHHHHHhhCCCEEEe
Confidence 3457778999999999999 8999999999 999999999999988 66899999999999999999999999999998
Q ss_pred eccCCCCCceeeeeee-eccccceeE--EeecccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEeccCcc
Q 025851 156 RKPKKLPGEVISEEYS-LEYGKDVME--MHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELK 232 (247)
Q Consensus 156 RK~~kl~~~~~s~~y~-~e~g~~~~~--l~~~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~~~~ 232 (247)
||.+... ....|. .++++..++ +..+.+.+|++||||||+++||+|+.+++++++++|++++++++++++.+.+
T Consensus 81 rk~~~~~---~~~~~~~~~~~~~~~eg~~~~~~~~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa~vv~v~~vvd~~~~~ 157 (187)
T PRK12560 81 RWYPYSL---SELNYNVVEIGSEYFEGVVYLNGIEKGDRVAIIDDTLSTGGTVIALIKAIENSGGIVSDVICVIEKTQNN 157 (187)
T ss_pred ccCCCcc---cceeEEeeeeeccceeeeeEccCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEEecccc
Confidence 8754321 111121 233333344 4445567999999999999999999999999999999999999999998878
Q ss_pred ccccc---CCCCccccc
Q 025851 233 GRERL---GEKPLFVLV 246 (247)
Q Consensus 233 grekL---~~~pv~sL~ 246 (247)
|++++ .++|++||+
T Consensus 158 g~~~l~~~~gv~v~sl~ 174 (187)
T PRK12560 158 GRKKLFTQTGINVKSLV 174 (187)
T ss_pred hHHHHhhccCCcEEEEE
Confidence 89888 478999986
No 9
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=99.95 E-value=1.6e-27 Score=214.65 Aligned_cols=166 Identities=20% Similarity=0.391 Sum_probs=146.6
Q ss_pred cCCChHHHHHhcccccCCCCCCCCceEEechhhccCHHHHHHHHHHHHHHhccCCccEEEecCCcchhHHHHHHHHhCCC
Q 025851 72 KAQDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAK 151 (247)
Q Consensus 72 ~~~~~~~~~l~~~ir~~p~fp~~gi~f~Di~~ll~dp~~~~~l~~~La~~~~~~~iDvVVgve~rGf~lA~~LA~~Lg~p 151 (247)
.+.++.++.|++.-|.+|+ | |.+++.++.||++++.+++.|++.+.+.++|+|+|++++|+++|..+|.+||+|
T Consensus 80 ~~~~~l~~~l~~~~rilpg----g--~~~~s~ll~~P~~l~~ig~~la~~~~~~~iD~VvgvetkGIpLA~avA~~L~vp 153 (268)
T TIGR01743 80 EFVEELCQSLSEPERILPG----G--YLYLTDILGKPSILSKIGKILASVFAEREIDAVMTVATKGIPLAYAVASVLNVP 153 (268)
T ss_pred HHHHHHHHHHHHCCCcccC----C--eEEechhhcCHHHHHHHHHHHHHHhcCCCCCEEEEEccchHHHHHHHHHHHCCC
Confidence 3468889999999999998 6 558999999999999999999999988889999999999999999999999999
Q ss_pred eEEeeccCCC-CCceeeeeeeecccc--ceeEEeecccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEec
Q 025851 152 FVPMRKPKKL-PGEVISEEYSLEYGK--DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIEL 228 (247)
Q Consensus 152 ~v~iRK~~kl-~~~~~s~~y~~e~g~--~~~~l~~~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~ 228 (247)
++++||..|. ++++++.+|...+.+ ..++++++.+.+|+|||||||+++||+|+.+++++++++|++++++++++++
T Consensus 154 ~vivRK~~K~t~g~~vs~nY~sgs~~~ie~m~l~k~~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvGv~vlve~ 233 (268)
T TIGR01743 154 LVIVRKDSKVTEGSTVSINYVSGSSNRIQTMSLAKRSLKTGSKVLIIDDFMKAGGTINGMINLLDEFDAEVAGIGVLIDN 233 (268)
T ss_pred EEEEEECCCCCCCCcEEEEEEcccCccceEEEEehhhCCCcCEEEEEeeecccCHHHHHHHHHHHHCCCEEEEEEEEEEC
Confidence 9999999887 788888888654332 2577887888899999999999999999999999999999999999999999
Q ss_pred cCcccccccCCCCccccc
Q 025851 229 PELKGRERLGEKPLFVLV 246 (247)
Q Consensus 229 ~~~~grekL~~~pv~sL~ 246 (247)
. ++++++.. +++||+
T Consensus 234 ~--~~~~~l~~-~~~SL~ 248 (268)
T TIGR01743 234 E--GVDEKLVD-DYMSLL 248 (268)
T ss_pred C--CChHHcCC-CceEEE
Confidence 7 35667643 777775
No 10
>PRK09213 pur operon repressor; Provisional
Probab=99.95 E-value=1.4e-27 Score=215.40 Aligned_cols=172 Identities=26% Similarity=0.441 Sum_probs=147.8
Q ss_pred cccccc-cCCChHHHHHhcccccCCCCCCCCceEEechhhccCHHHHHHHHHHHHHHhccCCccEEEecCCcchhHHHHH
Q 025851 66 MASADV-KAQDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPI 144 (247)
Q Consensus 66 ~~~~~~-~~~~~~~~~l~~~ir~~p~fp~~gi~f~Di~~ll~dp~~~~~l~~~La~~~~~~~iDvVVgve~rGf~lA~~L 144 (247)
++.++. .+.++.+++|++..|.+|+ | |.++++++.||+.++.+++.|++.+.+.++|+|++++++|+++|..+
T Consensus 75 ~~~~~a~~~~~~L~~~L~~~~rilpG----g--f~y~sdll~~P~~l~~i~~~la~~~~~~~iD~Vvtvet~GIplA~~v 148 (271)
T PRK09213 75 ISEEEAREFVEELCERLSEPDRILPG----G--YLYLSDLLGNPSILRKIGRIIASAFADKKIDAVMTVETKGIPLAYAV 148 (271)
T ss_pred CCHHHHHHHHHHHHHHHHhCCccCCC----C--eEEeCcccCCHHHHHHHHHHHHHHhcccCCCEEEEEccccHHHHHHH
Confidence 444433 3467888899999999998 6 55899999999999999999999998888999999999999999999
Q ss_pred HHHhCCCeEEeeccCCC-CCceeeeeeeecccc--ceeEEeecccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEE
Q 025851 145 ALAIGAKFVPMRKPKKL-PGEVISEEYSLEYGK--DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVE 221 (247)
Q Consensus 145 A~~Lg~p~v~iRK~~kl-~~~~~s~~y~~e~g~--~~~~l~~~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~ 221 (247)
|.+||+|++++||..|. ++++++..|...+.+ ..++++++.+.+|++||||||+++||+|+.+++++++++|+++++
T Consensus 149 A~~L~vp~vivRK~~K~~~G~~vs~~y~sgs~~~ie~m~L~~~~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvG 228 (271)
T PRK09213 149 ANYLNVPFVIVRRDSKVTEGSTVSINYVSGSSKRIETMSLSKRSLKEGSRVLIVDDFMKAGGTINGMISLLKEFDAEVVG 228 (271)
T ss_pred HHHHCCCEEEEEECCCCCCCCcEEEEEEecccccceEEEEeHhhcCCcCEEEEEeeecccCHhHHHHHHHHHHCCCEEEE
Confidence 99999999999998886 788888888553322 357888888889999999999999999999999999999999999
Q ss_pred EEEEEeccCcccccccCCCCccccc
Q 025851 222 CACVIELPELKGRERLGEKPLFVLV 246 (247)
Q Consensus 222 v~vlv~~~~~~grekL~~~pv~sL~ 246 (247)
+++++++.+ +.+++. .+++||+
T Consensus 229 v~vlVd~~~--~~~~l~-~~~~SL~ 250 (271)
T PRK09213 229 IGVLVETKE--PEERLV-DDYVSLL 250 (271)
T ss_pred EEEEEECCC--ChhhcC-CceEEEE
Confidence 999999874 556664 3777775
No 11
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=99.94 E-value=2.9e-26 Score=196.99 Aligned_cols=139 Identities=25% Similarity=0.432 Sum_probs=123.7
Q ss_pred CCCceEEechhhccCHHHHHHHHHHHHHHhccCCccEEEecCCcchhHHHHHHHHhCCCeEEeeccCCCCCceeeeeeee
Q 025851 93 KPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSL 172 (247)
Q Consensus 93 ~~gi~f~Di~~ll~dp~~~~~l~~~La~~~~~~~iDvVVgve~rGf~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~ 172 (247)
+++..|.|+..++.+|+.++.+++.|++.+.+.++|.|+|++.+|+++|..+|..+|+|++++||..|
T Consensus 40 ~~s~~yiD~~~~~~~p~~~~~i~~~la~~~~~~~~d~I~g~~~~GiplA~~vA~~l~~p~v~vRK~~k------------ 107 (187)
T PRK13810 40 KKSKYYIDIKKASTDPKTLKLIARQAALRIKEMDVDTVAGVELGGVPLATAVSLETGLPLLIVRKSVK------------ 107 (187)
T ss_pred CcCCEEEECchhcCCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEecCCC------------
Confidence 45669999999999999999999999999988889999999999999999999999999999998865
Q ss_pred ccccceeEEeecccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEeccCcccccccC--CCCccccc
Q 025851 173 EYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLG--EKPLFVLV 246 (247)
Q Consensus 173 e~g~~~~~l~~~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~~~~grekL~--~~pv~sL~ 246 (247)
+|+++.+ ..+.+.+|++|+|||||+|||+|+.+++++++++|++++++++++++.+ +|+++|+ ++|+++|+
T Consensus 108 ~~g~~~~--~~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~~v~vlvdr~~-g~~~~l~~~gi~~~sl~ 180 (187)
T PRK13810 108 DYGTGSR--FVGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIKYVITVVDREE-GAEENLKEADVELVPLV 180 (187)
T ss_pred ccCCCce--EEccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEEEEEEEEECCc-ChHHHHHHcCCcEEEEE
Confidence 2333332 2355679999999999999999999999999999999999999999874 7899996 57899886
No 12
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=99.93 E-value=3.3e-25 Score=196.84 Aligned_cols=161 Identities=25% Similarity=0.389 Sum_probs=132.0
Q ss_pred HHHhcccccCCCCCCCCceEEechhhccCHHHHHHHHHHHHHHhccCCccEEEecCCcchhHHHHHHHHhCCCeEEeecc
Q 025851 79 AGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKP 158 (247)
Q Consensus 79 ~~l~~~ir~~p~fp~~gi~f~Di~~ll~dp~~~~~l~~~La~~~~~~~iDvVVgve~rGf~lA~~LA~~Lg~p~v~iRK~ 158 (247)
+.+.+.+++.|+ | |.|++.++.||+.++.++..+++.+.+.++|+|++++++|+++|..+|.+||+|++++||.
T Consensus 70 ~~l~~ri~~~~~----g--y~d~~~il~~p~~~~~v~~~la~~~~~~~~D~Vvtv~~~GI~lA~~lA~~L~~p~vi~Rk~ 143 (238)
T PRK08558 70 EEVKARIKVDDE----G--YVDNSSVVFDPSFLRLIAPVVAERFMGLRVDVVLTAATDGIPLAVAIASYFGADLVYAKKS 143 (238)
T ss_pred HHHHhhcccCCC----C--EEEchhhhcCHHHHHHHHHHHHHHccCCCCCEEEEECcccHHHHHHHHHHHCcCEEEEEec
Confidence 334566666665 5 7799999999999999999999999887899999999999999999999999999999987
Q ss_pred CCCC-Cceeeeeeeecccc--ceeEEeecccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEeccCccccc
Q 025851 159 KKLP-GEVISEEYSLEYGK--DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRE 235 (247)
Q Consensus 159 ~kl~-~~~~s~~y~~e~g~--~~~~l~~~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~~~~gre 235 (247)
++.. +.++. .|...... ..+++..+.+.+|++||||||+++||+|+.+++++++++|+++++++++++..+ .|.+
T Consensus 144 ~~~~~~~~v~-~y~s~s~~~~~~~~l~~~~l~~G~rVLIVDDvi~TG~Tl~~~~~ll~~~ga~vvgv~vlv~~~~-~~~~ 221 (238)
T PRK08558 144 KETGVEKFYE-EYQRLASGIEVTLYLPASALKKGDRVLIVDDIIRSGETQRALLDLARQAGADVVGVFFLIAVGE-VGID 221 (238)
T ss_pred CCCCCcceEE-EeeccCCCceeEEEecHHHcCCcCEEEEEecccccCHHHHHHHHHHHHcCCEEEEEEEEEecCc-hHHH
Confidence 6543 23444 45322111 245666667789999999999999999999999999999999999999999975 4566
Q ss_pred ccC---CCCcccccC
Q 025851 236 RLG---EKPLFVLVS 247 (247)
Q Consensus 236 kL~---~~pv~sL~~ 247 (247)
++. ++|+.+|++
T Consensus 222 ~l~~~~~vpv~sl~~ 236 (238)
T PRK08558 222 RAREETDAPVDALYT 236 (238)
T ss_pred HHhHhcCCCEEEEEE
Confidence 663 689988863
No 13
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=99.93 E-value=1.2e-24 Score=189.56 Aligned_cols=168 Identities=20% Similarity=0.287 Sum_probs=134.3
Q ss_pred cccccccCCChHHHHHhccccc-CCCCC-CCCc---eEEechhhccCHHHHHHHHHHHHHHhccCCccEEEecCCcchhH
Q 025851 66 MASADVKAQDPRIAGISSAIRV-IPDFP-KPGI---MFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIF 140 (247)
Q Consensus 66 ~~~~~~~~~~~~~~~l~~~ir~-~p~fp-~~gi---~f~Di~~ll~dp~~~~~l~~~La~~~~~~~iDvVVgve~rGf~l 140 (247)
|+-+|....+...+.|.+.-.. ..+|- ++|. .|+|++.++.+|+.++.+++.|++.+...++|+|+|++.+|+++
T Consensus 2 ~~~~~~~~~~~l~~~l~~~gal~~g~F~L~SG~~S~~y~D~~~i~~~p~~l~~i~~~l~~~~~~~~~d~IvG~~~~Gi~~ 81 (206)
T PRK13809 2 MNYEDAKLRDQAVAILYQIGAIKFGKFILASGEETPIYVDMRLVISSPEVLQTIATLIWRLRPSFNSSLLCGVPYTALTL 81 (206)
T ss_pred cchhhhhhHHHHHHHHHHcCCEEECCEEECCcCCCCEEEEChhhccCHHHHHHHHHHHHHHhccCCCCEEEEecCccHHH
Confidence 3444443334455555544211 23454 3454 89999999999999999999999998777899999999999999
Q ss_pred HHHHHHHhCCCeEEeeccCCCCCceeeeeeeeccccceeEEeecccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEE
Q 025851 141 GPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVV 220 (247)
Q Consensus 141 A~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV 220 (247)
|..+|..+|+|++++||..|.++.. +.+++ .+.+.+|++|+|||||+|||+|+.+++++|+++|++++
T Consensus 82 A~~vA~~l~~p~~~~RK~~K~~G~~-----------~~~~~-~g~~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~vv 149 (206)
T PRK13809 82 ATSISLKYNIPMVLRRKELKNVDPS-----------DAIKV-EGLFTPGQTCLVINDMVSSGKSIIETAVALEEEGLVVR 149 (206)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCCc-----------CEEEE-ccccCCCCEEEEEEeccccCHHHHHHHHHHHHCCCEEE
Confidence 9999999999999999988866532 12332 23456999999999999999999999999999999999
Q ss_pred EEEEEEeccCcccccccC--CCCccccc
Q 025851 221 ECACVIELPELKGRERLG--EKPLFVLV 246 (247)
Q Consensus 221 ~v~vlv~~~~~~grekL~--~~pv~sL~ 246 (247)
+++|++++. .+|++++. ++|++||+
T Consensus 150 ~v~vlvdr~-~~~~~~l~~~gi~v~sl~ 176 (206)
T PRK13809 150 EALVFLDRQ-KGACQPLGPQGIKLSSVF 176 (206)
T ss_pred EEEEEEECc-ccHHHHHHhcCCCEEEEE
Confidence 999999986 57888874 57899886
No 14
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=99.91 E-value=1.8e-23 Score=178.02 Aligned_cols=153 Identities=27% Similarity=0.382 Sum_probs=123.0
Q ss_pred HhcccccCCCCCCCCceEEechhhccCHHHHHHHHHHHHHHhccCCccEEEecCCcchhHHHHHHHHhCCCeEEeeccCC
Q 025851 81 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKK 160 (247)
Q Consensus 81 l~~~ir~~p~fp~~gi~f~Di~~ll~dp~~~~~l~~~La~~~~~~~iDvVVgve~rGf~lA~~LA~~Lg~p~v~iRK~~k 160 (247)
+++..||.|+|+.++..|.+...++.||.+++.+++.|++.+.. ++|+|++++.+|+++|..+|+.+|+|++.++|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~i~~~k~~~dp~l~~~~~~~La~~l~~-~~d~Iv~v~~gGiplA~~lA~~L~~p~~~~~k~~~ 86 (178)
T PRK07322 8 VGGVTRELPLIRVGPDLAIALFVILGDTELTEAAAEALAKRLPT-EVDVLVTPETKGIPLAHALSRRLGKPYVVARKSRK 86 (178)
T ss_pred EcCEEeecCeeEeCCCCEEEEEhhhCCHHHHHHHHHHHHHHcCC-CCCEEEEeccCCHHHHHHHHHHHCCCEEEEEEeCC
Confidence 46678999999999888999999999999999999999999976 78999999999999999999999999988877554
Q ss_pred C--CCceeeeeeeeccccce-eEEeecc--cCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEeccCcccc
Q 025851 161 L--PGEVISEEYSLEYGKDV-MEMHVGA--VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGR 234 (247)
Q Consensus 161 l--~~~~~s~~y~~e~g~~~-~~l~~~~--~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~~~~gr 234 (247)
. ....+...+...++... +.+.... ..+|++||||||+++||+|+.+++++|+++|+++++++++++.++.+.|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~aa~~~L~~~GA~~V~~~~v~~~~~~~~~ 165 (178)
T PRK07322 87 PYMQDPIIQEVVSITTGKPQLLVLDGADAEKLKGKRVAIVDDVVSTGGTLTALERLVERAGGQVVAKAAIFAEGDASNR 165 (178)
T ss_pred CCCCCceEEEEEEEEeccceEEEecCccccccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEcCCCCCC
Confidence 2 22222222222222222 2222111 2589999999999999999999999999999999999999998764433
No 15
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=99.90 E-value=4.4e-23 Score=174.69 Aligned_cols=137 Identities=16% Similarity=0.275 Sum_probs=119.5
Q ss_pred eEEechhhccCHHHHHHHHHHHHHHhcc-CCccEEEecCCcchhHHHHHHHHhCCC-----eEEeeccCCCCCceeeeee
Q 025851 97 MFQDITTLLLDTKAFRDTIDLFVERYKD-KNISVVAGIEARGFIFGPPIALAIGAK-----FVPMRKPKKLPGEVISEEY 170 (247)
Q Consensus 97 ~f~Di~~ll~dp~~~~~l~~~La~~~~~-~~iDvVVgve~rGf~lA~~LA~~Lg~p-----~v~iRK~~kl~~~~~s~~y 170 (247)
.|.|+..++.+|+.++.+++.+++.+.+ .++|+|+|++.+|+++|..+|..+++| ++.+||..+..+
T Consensus 24 ~y~d~~~i~~~p~~~~~v~~~~~~~~~~~~~~d~Ivg~~~gG~~~A~~la~~l~~~~~~~~~~~~rk~~k~~g------- 96 (173)
T TIGR00336 24 YYFNIKLFNTGPELANLIARYAAAIIKSHLEFDVIAGPALGGIPIATAVSVKLAKPGGDIPLCFNRKEAKDHG------- 96 (173)
T ss_pred EEEECeecCChHHHHHHHHHHHHHHHHhcCCCCEEEccccChHHHHHHHHHHhcCcCCCceEEEEcCCcccCC-------
Confidence 7999999999999999999999999886 689999999999999999999999999 888887765322
Q ss_pred eeccccceeEEeecccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEeccCcccccccC---CCCcccccC
Q 025851 171 SLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLG---EKPLFVLVS 247 (247)
Q Consensus 171 ~~e~g~~~~~l~~~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~~~~grekL~---~~pv~sL~~ 247 (247)
...+ ..+.+.+|++||||||+++||+|+.+++++|+++|+++++++|++++.+.+|++++. ++|++||++
T Consensus 97 -----~~~~--~~g~~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~Ga~v~~~~vlvdr~~~~~~~~l~~~~gv~~~sl~~ 169 (173)
T TIGR00336 97 -----EGGN--IEGELLEGDKVVVVEDVITTGTSILEAVEIIQAAGGQVAGVIIAVDRQERSAGQEFEKEYGLPVISLIT 169 (173)
T ss_pred -----CCCc--eecCCCCCCEEEEEeccccChHHHHHHHHHHHHcCCeEEEEEEEEecCchhHHHHHHHhcCCeEEEEEe
Confidence 1111 113456899999999999999999999999999999999999999998778888884 789999863
No 16
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=99.90 E-value=6.3e-23 Score=174.65 Aligned_cols=134 Identities=23% Similarity=0.357 Sum_probs=115.8
Q ss_pred eEEechhhccCHHHHHHHHHHHHHHhccCCccEEEecCCcchhHHHHHHHHhCCCeEEeeccCCCCCceeeeeeeecccc
Q 025851 97 MFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGK 176 (247)
Q Consensus 97 ~f~Di~~ll~dp~~~~~l~~~La~~~~~~~iDvVVgve~rGf~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~e~g~ 176 (247)
.|.|...+..+|+.++.+++.|++.+.+ .|+|+|++.+|+++|..+|..+|+|++++||..+. |+.
T Consensus 31 ~yid~~~~~~~p~~~~~i~~~l~~~i~~--~d~ivg~~~ggi~lA~~lA~~l~~p~~~~rk~~k~------------yg~ 96 (176)
T PRK13812 31 YYVDKYLFETDPDCLRLIAEAFADRIDE--DTKLAGVALGAVPLVAVTSVETGVPYVIARKQAKE------------YGT 96 (176)
T ss_pred EEEeCeeccCCHHHHHHHHHHHHHHhcc--CCEEEEeecchHHHHHHHHHHHCCCEEEEeccCCc------------CCC
Confidence 7999999999999999999999998864 39999999999999999999999999999987652 222
Q ss_pred ceeEEeecccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEeccCcccccccC--CCCcccccC
Q 025851 177 DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLG--EKPLFVLVS 247 (247)
Q Consensus 177 ~~~~l~~~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~~~~grekL~--~~pv~sL~~ 247 (247)
... ..+.+.+|++|+|||||++||+|+.+++++++++|++++++++++++. .+|+++++ ++|+++|++
T Consensus 97 ~~~--~~g~~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~vv~~~vlvdr~-~~~~~~l~~~g~~v~sL~~ 166 (176)
T PRK13812 97 GNR--IEGRLDEGEEVVVLEDIATTGQSAVDAVEALREAGATVNRVLVVVDRE-EGARENLADHDVELEALVT 166 (176)
T ss_pred CCe--EEecCCCcCEEEEEEEeeCCCHHHHHHHHHHHHCCCeEEEEEEEEECC-cchHHHHHhcCCcEEEEEe
Confidence 211 113456899999999999999999999999999999999999999987 57788874 589999863
No 17
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=99.90 E-value=8.2e-23 Score=172.91 Aligned_cols=131 Identities=27% Similarity=0.440 Sum_probs=112.4
Q ss_pred eEEechhhccCHHHHHHHHHHHHHHhccCCccEEEecCCcchhHHHHHHHHhCCCeEEeeccCCCCCceeeeeeeecccc
Q 025851 97 MFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGK 176 (247)
Q Consensus 97 ~f~Di~~ll~dp~~~~~l~~~La~~~~~~~iDvVVgve~rGf~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~e~g~ 176 (247)
.|.|+..++.+|+.++.+++.|++.+ ++|+|+|++.+|+++|..+|..+|+|++++||..+..+ +
T Consensus 30 ~y~d~~~l~~~p~~~~~l~~~l~~~~---~~d~Vvg~~~gGi~~A~~~a~~l~~p~~~~rK~~k~~g------------~ 94 (170)
T PRK13811 30 YYIDIKTAITHPALLKEIAAEVAKRY---DFDVVAGVAVGGVPLAVAVSLAAGKPYAIIRKEAKDHG------------K 94 (170)
T ss_pred EEEeCchhccCHHHHHHHHHHHHhhC---CCCEEEecCcCcHHHHHHHHHHHCCCEEEEecCCCCCC------------C
Confidence 78899999999999999999987654 58999999999999999999999999999998765332 2
Q ss_pred ceeEEeecccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEeccCcccccccC--CCCccccc
Q 025851 177 DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLG--EKPLFVLV 246 (247)
Q Consensus 177 ~~~~l~~~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~~~~grekL~--~~pv~sL~ 246 (247)
..+.. +. .+|++|+||||+++||+|+.+++++|+++|++++++++++++.+ +|+++|+ ++|+++|+
T Consensus 95 ~~~~~--g~-~~g~~VlIVDDvi~TG~T~~~~~~~l~~~Ga~v~~~~~~vdr~~-g~~~~l~~~gv~~~sl~ 162 (170)
T PRK13811 95 AGLII--GD-VKGKRVLLVEDVTTSGGSALYGIEQLRAAGAVVDDVVTVVDREQ-GAEELLAELGITLTPLV 162 (170)
T ss_pred cceEE--cc-cCCCEEEEEEecccccHHHHHHHHHHHHCCCeEEEEEEEEECCc-cHHHHHHhcCCcEEEEe
Confidence 21211 22 58999999999999999999999999999999999999999974 6787774 67899886
No 18
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=99.89 E-value=1.4e-22 Score=175.55 Aligned_cols=145 Identities=23% Similarity=0.354 Sum_probs=117.8
Q ss_pred CCCCceEEechhhccCHHHHHHHHHHHHHHhc--cCCccEEEecCCcchhHHHHHHHHhCCCeEEeeccCCCCCceeeee
Q 025851 92 PKPGIMFQDITTLLLDTKAFRDTIDLFVERYK--DKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEE 169 (247)
Q Consensus 92 p~~gi~f~Di~~ll~dp~~~~~l~~~La~~~~--~~~iDvVVgve~rGf~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~ 169 (247)
|+|+..|+|+..+..+|+.++.+++.|++.+. +.++|+|+|++.+|+++|..+|..+++|+...++.....+..
T Consensus 49 ~~~~~~yid~~~~~~~~~~l~~i~~~la~~i~~~~~~~D~Ivgi~~gG~~~A~~lA~~L~~~~~~~~~~k~~~~~~---- 124 (200)
T PRK02277 49 PAPKDIHIDWSSIGSSSSRLRYIASAMADMLEKEDEEVDVVVGIAKSGVPLATLVADELGKDLAIYHPKKWDHGEG---- 124 (200)
T ss_pred CCCCCEEEEChhhccCHHHHHHHHHHHHHHHHhcCCCCCEEEeeccCCHHHHHHHHHHhCCCcEEEeccccccccc----
Confidence 77889999999999999999999999999874 357899999999999999999999999998776543211100
Q ss_pred eeeccccceeEEeecccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEeccCcccccccCCCCcccccC
Q 025851 170 YSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLVS 247 (247)
Q Consensus 170 y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~~~~grekL~~~pv~sL~~ 247 (247)
....+.+.. .....+|++|||||||+|||+|+.++++.|+++|+++++++++++++ |.+++.++|++||++
T Consensus 125 ---~~~~~~~~~-~~~~~~gk~VlIVDDVitTG~Tl~~ai~~l~~~Ga~~v~v~vlvdk~---g~~~~~~vpv~sl~~ 195 (200)
T PRK02277 125 ---EKKTGSFSR-NFASVEGKRCVIVDDVITSGTTMKETIEYLKEHGGKPVAVVVLIDKS---GIDEIDGVPVYSLIR 195 (200)
T ss_pred ---ccccceecc-ccccCCcCEEEEEeeccCchHHHHHHHHHHHHcCCEEEEEEEEEECc---chhhhcCCCeEEEEE
Confidence 000111110 01236899999999999999999999999999999999999999985 566788899999873
No 19
>PRK06031 phosphoribosyltransferase; Provisional
Probab=99.89 E-value=1.4e-22 Score=179.46 Aligned_cols=151 Identities=20% Similarity=0.375 Sum_probs=117.7
Q ss_pred HhcccccCCCCCCCCceEEechhhccCH---HHHHHHHHHHHHHhccCCccEEEecCCcchhHHHHHHHHhCCC-eEEee
Q 025851 81 ISSAIRVIPDFPKPGIMFQDITTLLLDT---KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAK-FVPMR 156 (247)
Q Consensus 81 l~~~ir~~p~fp~~gi~f~Di~~ll~dp---~~~~~l~~~La~~~~~~~iDvVVgve~rGf~lA~~LA~~Lg~p-~v~iR 156 (247)
|...+|.+|+|| +|++.++.++ +.++.+++.|++++...++|+|+|++.+||++|..+|++||++ +++++
T Consensus 42 l~~~~r~~~~~~------~~i~~ll~~~~~~~~~~~la~~La~~~~~~~~DvIVgv~~~Gi~lA~~lA~~Lg~~~~vpl~ 115 (233)
T PRK06031 42 LLLPIRGLPDGD------RALASLIVNQASFEVLDALAEHLAEKARAFDPDVVAGLPTLGLTLAAAVARKLGHTRYVPLG 115 (233)
T ss_pred eccCcEECCCCC------CchhhHhCChhHHHHHHHHHHHHHHHcccCCCcEEEEeccCCHHHHHHHHHHHCCCCceEEE
Confidence 677999999977 4999999998 5556799999999987789999999999999999999999975 67777
Q ss_pred ccCCCCCc-ee---eeeeeeccccceeEEeec--ccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEeccC
Q 025851 157 KPKKLPGE-VI---SEEYSLEYGKDVMEMHVG--AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 230 (247)
Q Consensus 157 K~~kl~~~-~~---s~~y~~e~g~~~~~l~~~--~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~~ 230 (247)
+.+|.... .. ..++........+.+... ...+|+||||||||++||+|+.+++++|+++|+++++++++++.++
T Consensus 116 ~~rK~~~~~~l~~~~~sitt~~~~~~~~l~~~~~~~~~GkrVLIVDDVitTG~Tl~aa~~lL~~~Ga~Vvgv~v~v~~g~ 195 (233)
T PRK06031 116 TSRKFWYRDELSVPLSSITTPDQGKRLYIDPRMLPLLEGRRVALIDDVISSGASIVAGLRLLAACGIEPAGIGAAMLQSE 195 (233)
T ss_pred EccccccccccccceeeeeccCccceEEecccccccCCCCEEEEEEeEccccHHHHHHHHHHHHcCCeEEEEEEEEEccc
Confidence 65554211 00 011110011233455432 2469999999999999999999999999999999999999999874
Q ss_pred cccccccC
Q 025851 231 LKGRERLG 238 (247)
Q Consensus 231 ~~grekL~ 238 (247)
+++++|+
T Consensus 196 -~~~~~l~ 202 (233)
T PRK06031 196 -RWRESLA 202 (233)
T ss_pred -cHHHHHH
Confidence 6777775
No 20
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=99.89 E-value=2.4e-22 Score=193.73 Aligned_cols=144 Identities=19% Similarity=0.358 Sum_probs=125.5
Q ss_pred CCCCC-CCCc---eEEechhhccCHHHHHHHHHHHHHHhccCCccEEEecCCcchhHHHHHHHHhCCCeEEeeccCCCCC
Q 025851 88 IPDFP-KPGI---MFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPG 163 (247)
Q Consensus 88 ~p~fp-~~gi---~f~Di~~ll~dp~~~~~l~~~La~~~~~~~iDvVVgve~rGf~lA~~LA~~Lg~p~v~iRK~~kl~~ 163 (247)
..+|- ++|. .|.|+..++.+|+.++.+++.|++.+.+.++|+|+|++.+|+++|..+|..+|+|++++||..|.
T Consensus 302 fG~F~L~SG~~S~~YiD~~~lls~P~~l~~v~~~la~~l~~~~~D~I~Gia~gGiPlAt~lA~~lg~p~v~vRKe~K~-- 379 (477)
T PRK05500 302 FGEYVQASGATFSYYIDLRKIISNPQLFHQVLSAYAEILKNLTFDRIAGIPYGSLPTATGLALHLHHPMIFPRKEVKA-- 379 (477)
T ss_pred eCcEEECCcCcCCEEEEChhhhcCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEecCcCc--
Confidence 34565 4455 89999999999999999999999999887899999999999999999999999999999998763
Q ss_pred ceeeeeeeeccccceeEEeecccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEeccCcccccccC--CCC
Q 025851 164 EVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLG--EKP 241 (247)
Q Consensus 164 ~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~~~~grekL~--~~p 241 (247)
||+.. +.++.+.+|++|||||||+|||+|+.+++++|+++|++|+++++++++.+ +|+++|+ ++|
T Consensus 380 ----------~G~~~--~ieG~~~~G~rVlIVDDViTTGgSi~eaie~l~~aG~~V~~v~vlVDR~~-g~~~~L~~~gv~ 446 (477)
T PRK05500 380 ----------HGTRR--LIEGNFHPGETVVVVDDILITGKSVMEGAEKLKSAGLNVRDIVVFIDHEQ-GVKDKLQSHGYQ 446 (477)
T ss_pred ----------cCCCc--eEecCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECCc-chHHHHHhcCCC
Confidence 33332 22455679999999999999999999999999999999999999999986 7888885 478
Q ss_pred ccccc
Q 025851 242 LFVLV 246 (247)
Q Consensus 242 v~sL~ 246 (247)
++||+
T Consensus 447 ~~Sl~ 451 (477)
T PRK05500 447 AYSVL 451 (477)
T ss_pred EEEEE
Confidence 88886
No 21
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=99.88 E-value=9.6e-22 Score=170.14 Aligned_cols=135 Identities=28% Similarity=0.416 Sum_probs=115.4
Q ss_pred eEEechhhccCHHHHHHHHHHHHHHhccC--CccEEEecCCcchhHHHHHHHHhCCCeEEeeccCCCCCceeeeeeeecc
Q 025851 97 MFQDITTLLLDTKAFRDTIDLFVERYKDK--NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEY 174 (247)
Q Consensus 97 ~f~Di~~ll~dp~~~~~l~~~La~~~~~~--~iDvVVgve~rGf~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~e~ 174 (247)
.|.|++.++.+|+.++.+++.|++++.+. ++|+|+|++.+|+++|..+|..+++|+++.||..+..+.
T Consensus 33 ~y~d~~~i~~~p~~~~~~~~~la~~i~~~~~~~d~Ivgi~~gG~~~A~~la~~L~~~~~~~rk~~~~~g~---------- 102 (202)
T PRK00455 33 YYFDCRKLLSYPEALALLGRFLAEAIKDSGIEFDVVAGPATGGIPLAAAVARALDLPAIFVRKEAKDHGE---------- 102 (202)
T ss_pred eeEeChhhhcCHHHHHHHHHHHHHHHHhcCCCCCEEEecccCcHHHHHHHHHHhCCCEEEEecccCCCCC----------
Confidence 78999999999999999999999999875 899999999999999999999999999999876542211
Q ss_pred ccceeEEeecccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEeccCcccccccC--CCCccccc
Q 025851 175 GKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLG--EKPLFVLV 246 (247)
Q Consensus 175 g~~~~~l~~~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~~~~grekL~--~~pv~sL~ 246 (247)
...++ +...+|++||||||+++||+|+.+++++|+++|++++++++++++. .+|+++++ ++|++||+
T Consensus 103 -~~~~~---~~~~~g~~VliVDDvi~tG~Tl~~~~~~l~~~Ga~~v~~~vlv~~~-~~~~~~~~~~g~~~~sl~ 171 (202)
T PRK00455 103 -GGQIE---GRRLFGKRVLVVEDVITTGGSVLEAVEAIRAAGAEVVGVAVIVDRQ-SAAQEVFADAGVPLISLI 171 (202)
T ss_pred -CceEE---ccCCCCCEEEEEecccCCcHHHHHHHHHHHHcCCEEEEEEEEEECc-chHHHHHHhcCCcEEEEe
Confidence 01111 2235799999999999999999999999999999999999999997 46777664 67898886
No 22
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=99.88 E-value=1.3e-21 Score=168.06 Aligned_cols=131 Identities=29% Similarity=0.451 Sum_probs=112.0
Q ss_pred eEEechhhccCHHHHHHHHHHHHHHhccC--CccEEEecCCcchhHHHHHHHHhCCCeEEeeccCCCCCceeeeeeeecc
Q 025851 97 MFQDITTLLLDTKAFRDTIDLFVERYKDK--NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEY 174 (247)
Q Consensus 97 ~f~Di~~ll~dp~~~~~l~~~La~~~~~~--~iDvVVgve~rGf~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~e~ 174 (247)
+|.|++.++.||+.++.+++.|++++.+. ++|+|+|++.+|+++|..+|.++++|++..+|.++ .
T Consensus 27 ~yid~~~l~~~p~~~~~~~~~La~~i~~~~~~~d~Ivgi~~gGi~~A~~la~~L~~~~i~~~k~~~---~---------- 93 (187)
T TIGR01367 27 YFLQSATLLEHPEALMELGGELAQKILDYGLKVDFIVGPAMGGVILGYEVARQLSVRSIFAEREGG---G---------- 93 (187)
T ss_pred eeEechhhhcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEccCcHHHHHHHHHHhCCCeEEEEEeCC---c----------
Confidence 79999999999999999999999999764 78999999999999999999999999988775431 0
Q ss_pred ccceeEEeec-ccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEeccCcccccccCCCCccccc
Q 025851 175 GKDVMEMHVG-AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 246 (247)
Q Consensus 175 g~~~~~l~~~-~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~~~~grekL~~~pv~sL~ 246 (247)
+.+..+ .+.+|++|||||||++||+|+.+++++++++|++++++++++++.+ +++...++|+++|+
T Consensus 94 ----~~~~~~~~l~~G~~VLIVDDIi~TG~Tl~~a~~~l~~~Ga~vv~~~vlid~~~--~~~~~~~~~~~sl~ 160 (187)
T TIGR01367 94 ----MKLRRGFAVKPGEKFVAVEDVVTTGGSLLEAIRAIEGQGGQVVGLACIIDRSQ--GGKPDSGVPLMSLK 160 (187)
T ss_pred ----EEEeecccCCCCCEEEEEEeeecchHHHHHHHHHHHHcCCeEEEEEEEEECcC--CCcccCCCCEEEEE
Confidence 111111 2458999999999999999999999999999999999999999873 44455678998876
No 23
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.83 E-value=1.2e-19 Score=157.12 Aligned_cols=144 Identities=26% Similarity=0.382 Sum_probs=118.9
Q ss_pred CCCCC-CCCc---eEEechhhccCHHHHHHHHHHHHHHhcc-CCccEEEecCCcchhHHHHHHHHhC-CC-eEEeeccCC
Q 025851 88 IPDFP-KPGI---MFQDITTLLLDTKAFRDTIDLFVERYKD-KNISVVAGIEARGFIFGPPIALAIG-AK-FVPMRKPKK 160 (247)
Q Consensus 88 ~p~fp-~~gi---~f~Di~~ll~dp~~~~~l~~~La~~~~~-~~iDvVVgve~rGf~lA~~LA~~Lg-~p-~v~iRK~~k 160 (247)
.++|+ ++|. +|.|...++.+|+..+.+...++...++ .++|+|+|++.+|+++|..+|.+++ .| ++++||..|
T Consensus 18 fG~f~LsSG~~SpyY~d~~~~~~~p~~~~~i~~~~a~~~~~~~~~d~v~G~a~ggiP~A~~~a~~l~~~~~~~~~Rke~K 97 (201)
T COG0461 18 FGEFTLSSGRKSPYYVDLRLFLTGPELLQLIAFALAEIIKEALEFDVVAGPALGGIPLAAATALALAHLPPMAYVRKEAK 97 (201)
T ss_pred cCceeecCCCcCCeEEecccccCCHHHHHHHHHHHHHHhhccCCCcEEEeccccchHHHHHHHHHhccCCcEEEEeceec
Confidence 56676 4555 8999999999999999999999998887 4899999999999999999999993 22 777888766
Q ss_pred CCCceeeeeeeeccccceeEEeecccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEeccCcccccccC--
Q 025851 161 LPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLG-- 238 (247)
Q Consensus 161 l~~~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~~~~grekL~-- 238 (247)
-+ |+... ..+...+|++|+|||||+|||+++.++++.|+++|++|+++++++++. .++++.++
T Consensus 98 ~h------------G~~~~--ieG~~~~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V~gv~~ivDR~-~~~~~~~~~~ 162 (201)
T COG0461 98 DH------------GTGGL--IEGGEVKGEKVVVVEDVITTGGSILEAVEALREAGAEVVGVAVIVDRQ-SGAKEVLKEY 162 (201)
T ss_pred cC------------CCcce--eEecCCCCCEEEEEEecccCCHhHHHHHHHHHHcCCeEEEEEEEEecc-hhHHHHHHhc
Confidence 33 33211 113345999999999999999999999999999999999999999996 46777776
Q ss_pred CCCccccc
Q 025851 239 EKPLFVLV 246 (247)
Q Consensus 239 ~~pv~sL~ 246 (247)
++++++|+
T Consensus 163 g~~~~sl~ 170 (201)
T COG0461 163 GVKLVSLV 170 (201)
T ss_pred CCceEEEe
Confidence 56777765
No 24
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=99.80 E-value=7.5e-19 Score=148.03 Aligned_cols=142 Identities=21% Similarity=0.284 Sum_probs=114.7
Q ss_pred CCCceEEechhhccCHHHHHHHHHHHHHH-hcc--CCccEEEecCCcchhHHHHHHHHhCCCeEEee--ccCCCCCceee
Q 025851 93 KPGIMFQDITTLLLDTKAFRDTIDLFVER-YKD--KNISVVAGIEARGFIFGPPIALAIGAKFVPMR--KPKKLPGEVIS 167 (247)
Q Consensus 93 ~~gi~f~Di~~ll~dp~~~~~l~~~La~~-~~~--~~iDvVVgve~rGf~lA~~LA~~Lg~p~v~iR--K~~kl~~~~~s 167 (247)
.|-.+|+|++++-..+..++.++..|++. +.. .++|+|||+...|+++|+.+|..||..|...+ |.++..+.-
T Consensus 50 ~p~Di~i~W~siG~s~sRl~~Is~am~Dm~m~~~~~evDvVvGIa~sGvPlAtmvA~elg~elaiY~PrK~~~de~~~-- 127 (203)
T COG0856 50 APVDIKIDWRSIGKSGSRLRYISEAMADMIMEKVSFEVDVVVGIAISGVPLATMVAYELGKELAIYHPRKHRKDEGAG-- 127 (203)
T ss_pred CCcceEEechhhccchHHHHHHHHHHHHHHHHhccceeEEEEEEeecCccHHHHHHHHhCCceEEEecccccccccCC--
Confidence 35568999999999999999999999993 332 57899999999999999999999999987543 333221110
Q ss_pred eeeeeccccceeEEeecccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEeccCcccccccCCCCcccccC
Q 025851 168 EEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLVS 247 (247)
Q Consensus 168 ~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~~~~grekL~~~pv~sL~~ 247 (247)
.++.|. +.-+-+.||+++||||++|||+|+.++++.|++.|++.+.|.+++++. |-+.++++|+.||++
T Consensus 128 -------~~G~iS-~NFa~V~gK~cvIVDDvittG~Ti~E~Ie~lke~g~kpv~v~VL~dK~---G~dei~gvPi~sLlr 196 (203)
T COG0856 128 -------KGGSIS-SNFASVEGKRCVIVDDVITTGSTIKETIEQLKEEGGKPVLVVVLADKK---GVDEIEGVPVESLLR 196 (203)
T ss_pred -------cCceee-cccccccCceEEEEecccccChhHHHHHHHHHHcCCCcEEEEEEEccC---CcccccCcchHHhhe
Confidence 011121 111346899999999999999999999999999999999999999985 788999999999985
No 25
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=99.79 E-value=1e-18 Score=137.97 Aligned_cols=122 Identities=30% Similarity=0.435 Sum_probs=93.2
Q ss_pred hhccCHHHHHHHHHHHHHHhcc--CCccEEEecCCcchhHHHHHHHHhCCCeEEeeccCCCCCceeeeeeeeccccceeE
Q 025851 103 TLLLDTKAFRDTIDLFVERYKD--KNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVME 180 (247)
Q Consensus 103 ~ll~dp~~~~~l~~~La~~~~~--~~iDvVVgve~rGf~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~ 180 (247)
.++.+++.++.+++.+++++.+ .++|.|+|++.+|+++|..+|.+++.|+....+...... . ............+.
T Consensus 2 ~i~~~~~~~~~~~~~la~~i~~~~~~~~~ivgi~~~G~~~a~~la~~l~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~ 79 (125)
T PF00156_consen 2 KIILSPEQIEALAERLAEQIKESGFDFDVIVGIPRGGIPLAAALARALGIPLVFVRKRKSYYP-G-SDKTSREKNNQELF 79 (125)
T ss_dssp EEEEBHHHHHHHHHHHHHHHHHHTTTSSEEEEETTTTHHHHHHHHHHHTHEEEEEEEEEEEES-E-EEEEEEETEEEEEE
T ss_pred EEEEcHHHHHHHHHHHHHHHHHhCCCCCEEEeehhccHHHHHHHHHHhCCCccceeeeecccc-c-chhhhhccCceEEe
Confidence 3678999999999999999876 356779999999999999999999999987765432110 0 00000111111222
Q ss_pred EeecccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEE
Q 025851 181 MHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI 226 (247)
Q Consensus 181 l~~~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv 226 (247)
.......+|++||||||+++||+|+.++++.|+++|++++.+++++
T Consensus 80 ~~~~~~~~gk~vliVDDvi~tG~Tl~~~~~~L~~~g~~~v~~~vl~ 125 (125)
T PF00156_consen 80 IIDKEDIKGKRVLIVDDVIDTGGTLKEAIELLKEAGAKVVGVAVLV 125 (125)
T ss_dssp EEESSSGTTSEEEEEEEEESSSHHHHHHHHHHHHTTBSEEEEEEEE
T ss_pred ecccccccceeEEEEeeeEcccHHHHHHHHHHHhCCCcEEEEEEEC
Confidence 2334567999999999999999999999999999999999999885
No 26
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=99.61 E-value=8.2e-15 Score=122.55 Aligned_cols=112 Identities=21% Similarity=0.280 Sum_probs=87.6
Q ss_pred hccCHHHHHHHHHHHHHHhccC-CccEEEecCCcchhHHHHHHHHhCCCeEEeeccCCCCCceeeeeeeeccccceeEEe
Q 025851 104 LLLDTKAFRDTIDLFVERYKDK-NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMH 182 (247)
Q Consensus 104 ll~dp~~~~~l~~~La~~~~~~-~iDvVVgve~rGf~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l~ 182 (247)
++.+.+.++..++.|+.++.+. ++|+|+|+++||+++|..|+++|++|++... ...+|..+ .++.+++.
T Consensus 8 ~~is~~~i~~~i~~la~~I~~~~~~d~vvgv~~GG~~fa~~L~~~L~~~~v~~i---------~~ssY~~~-~~~~~~~~ 77 (156)
T PRK09177 8 FPVSWDQLHRDARALAWRLLPAGQWKGIIAVTRGGLVPAAILARELGIRLVDTV---------CISSYDHD-NQGELKVL 77 (156)
T ss_pred EEcCHHHHHHHHHHHHHHHHhhCCCCEEEEEecCCeehHHHHHHHcCCCceeEE---------EEEEECCC-cCCcEEEe
Confidence 4578888999999999988653 4899999999999999999999999975211 01233222 33445555
Q ss_pred ecccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEeccC
Q 025851 183 VGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 230 (247)
Q Consensus 183 ~~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~~ 230 (247)
.+...+|++|||||||++||.|+.++.+++++ +.++++..++.
T Consensus 78 ~~~~~~gk~VLIVDDIiDTG~Tl~~v~~~l~~-----v~~a~l~~K~~ 120 (156)
T PRK09177 78 KRAEGDGEGFLVVDDLVDTGGTARAVREMYPK-----AHFATVYAKPA 120 (156)
T ss_pred cCCCcCcCEEEEEeeeeCCHHHHHHHHHHHhh-----CCEEEEEECcC
Confidence 55557999999999999999999999999975 57888888873
No 27
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.60 E-value=1.5e-14 Score=123.54 Aligned_cols=118 Identities=17% Similarity=0.226 Sum_probs=86.7
Q ss_pred hccCHHHHHHHHHHHHHHhcc---CCccEEEecCCcchhHHHHHHHHhCCCeE--EeeccCCCCCceeeeeeeeccccce
Q 025851 104 LLLDTKAFRDTIDLFVERYKD---KNISVVAGIEARGFIFGPPIALAIGAKFV--PMRKPKKLPGEVISEEYSLEYGKDV 178 (247)
Q Consensus 104 ll~dp~~~~~l~~~La~~~~~---~~iDvVVgve~rGf~lA~~LA~~Lg~p~v--~iRK~~kl~~~~~s~~y~~e~g~~~ 178 (247)
++.+.+.+......|+.++.+ .+.++|+++..+|+.+|..+|..+++|+. .+++.+....... +...
T Consensus 15 ~~~s~~~i~~~i~~la~~i~~~~~~~~~viV~i~~gg~~~A~~La~~l~~~~~~~~l~~~~~~~~~~~--------~~~~ 86 (181)
T PRK09162 15 CLVSAAEVEAAIDRMADEITADLADENPLVLCVMGGGLVFTGQLLPRLDFPLEFDYLHATRYRNETTG--------GELV 86 (181)
T ss_pred EeecHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCCcHHHHHHHHHHcCCCcccCEEEEEecCCCccC--------Ccee
Confidence 567777777777777777654 24579999999999999999999999863 2222211010000 0011
Q ss_pred eEEeecccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEecc
Q 025851 179 MEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELP 229 (247)
Q Consensus 179 ~~l~~~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~ 229 (247)
+.+......+|++|||||||++||+|+.++++.|+++|++.|.++++++++
T Consensus 87 ~~~~~~~~v~gk~VLIVDDIidTG~Tl~~~~~~Lk~~Ga~~V~~avL~~k~ 137 (181)
T PRK09162 87 WKVKPRESLKGRTVLVVDDILDEGHTLAAIRDRCLEMGAAEVYSAVLVDKT 137 (181)
T ss_pred EecCCCCCCCCCEEEEEccccCcHHHHHHHHHHHHhCCCCEEEEEEEEEcC
Confidence 111112346899999999999999999999999999999999999999986
No 28
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=99.59 E-value=2.8e-14 Score=120.37 Aligned_cols=116 Identities=18% Similarity=0.247 Sum_probs=85.6
Q ss_pred ccCHHHHHHHHHHHHHHhcc---CCccEEEecCCcchhHHHHHHHHhCCCeEE--eeccCCCCCceeeeeeeec-cccce
Q 025851 105 LLDTKAFRDTIDLFVERYKD---KNISVVAGIEARGFIFGPPIALAIGAKFVP--MRKPKKLPGEVISEEYSLE-YGKDV 178 (247)
Q Consensus 105 l~dp~~~~~l~~~La~~~~~---~~iDvVVgve~rGf~lA~~LA~~Lg~p~v~--iRK~~kl~~~~~s~~y~~e-~g~~~ 178 (247)
+.+.+.++..++.|+.++.+ .+.++|+++..+|+.+|..+++.|++|... +.-. +|... ...+.
T Consensus 2 lis~~~i~~~i~~lA~~I~~~~~~~~~vvv~i~~GG~~~a~~l~~~L~~~~~v~~i~~~----------~Y~~~~~~~~~ 71 (166)
T TIGR01203 2 LIPEEQIKARIAELAKQITEDYAGKPLVLLCVLKGSFPFFADLIRYIAVPVQVDFMAVS----------SYGNGMQSSGD 71 (166)
T ss_pred ccCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEccCCHHHHHHHHHhcCCCceeeEEEEe----------eccCCCcccCc
Confidence 45677777777888777654 146899999999999999999999987532 2211 11100 00111
Q ss_pred eEE--eecccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEeccC
Q 025851 179 MEM--HVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 230 (247)
Q Consensus 179 ~~l--~~~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~~ 230 (247)
..+ ......+|++|||||||++||+|+.++++.|++.|++.+.++++++++.
T Consensus 72 ~~~~~~~~~~~~gk~vlivDDii~TG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~ 125 (166)
T TIGR01203 72 VKILKDLDLSIKGKDVLIVEDIVDTGLTLQYLLDLLKARKPKSLKIVTLLDKPS 125 (166)
T ss_pred eEEecCCCCCCCCCEEEEEeeeeCcHHHHHHHHHHHHHCCCCEEEEEEEEecCc
Confidence 111 1123467999999999999999999999999999999999999999973
No 29
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=99.58 E-value=5.6e-15 Score=126.64 Aligned_cols=119 Identities=18% Similarity=0.238 Sum_probs=79.0
Q ss_pred cCHHHHHHHHHHHHHHhcc---CCccEEEecC-------CcchhHHHHHHHHhCCC---eE--EeeccCCCCCceeeeee
Q 025851 106 LDTKAFRDTIDLFVERYKD---KNISVVAGIE-------ARGFIFGPPIALAIGAK---FV--PMRKPKKLPGEVISEEY 170 (247)
Q Consensus 106 ~dp~~~~~l~~~La~~~~~---~~iDvVVgve-------~rGf~lA~~LA~~Lg~p---~v--~iRK~~kl~~~~~s~~y 170 (247)
.+..+.+.++..|+..+.. ..+|.|++|| .|||..+..||+.+... +. ..|.+. .++...+...
T Consensus 56 ~~~~l~~~l~~~l~~~~~~~~~~~~~~ivpVP~~~~r~~~RGfnq~~~la~~l~~~~~~~~~~l~r~~~-~~Q~~l~~~~ 134 (190)
T TIGR00201 56 GQAEIIRALASLLSLTVSKAYRDLPDVIVPVPLSKEREWRRGFNQADLLAQCLSRWLFNYHNIVIRLNN-ETQSKLKATL 134 (190)
T ss_pred CChHHHHHHHHHHHHHHHhhccCCCCEEEeCCCCHHHHHHhCCCHHHHHHHHHHHHhCCCcceEEEecc-cccccCCHHH
Confidence 4455566666666654432 2368999998 59997777777665321 22 223332 2222222222
Q ss_pred eeccccceeEEeecccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEE
Q 025851 171 SLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI 226 (247)
Q Consensus 171 ~~e~g~~~~~l~~~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv 226 (247)
+.++..+.|.+... ..+|++|||||||+|||+|+.++++.|+++|++.|.++++.
T Consensus 135 R~~n~~~~f~~~~~-~~~~~~vllvDDV~TTGaTl~~~~~~L~~~Ga~~V~~~~la 189 (190)
T TIGR00201 135 RFLNLENAFDLKNN-SFQGRNIVLVDDVVTTGATLHEIARLLLELGAASVQVWTLA 189 (190)
T ss_pred HHHHHhCcEEccCC-CCCCCEEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEEE
Confidence 22233456666433 35899999999999999999999999999999999999875
No 30
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=99.58 E-value=3.6e-14 Score=122.14 Aligned_cols=120 Identities=23% Similarity=0.330 Sum_probs=91.1
Q ss_pred chhhccCHHHHHHHHHHHHHHhcc---CCccEEEecCCcchhHHHHHHHHhCC---CeE--EeeccCCCCCceeeeeeee
Q 025851 101 ITTLLLDTKAFRDTIDLFVERYKD---KNISVVAGIEARGFIFGPPIALAIGA---KFV--PMRKPKKLPGEVISEEYSL 172 (247)
Q Consensus 101 i~~ll~dp~~~~~l~~~La~~~~~---~~iDvVVgve~rGf~lA~~LA~~Lg~---p~v--~iRK~~kl~~~~~s~~y~~ 172 (247)
+..++.+.+.++..+..|+.++.+ ...++|+|+..||+++|..|+++++. |+. +++... |..
T Consensus 7 ~~~~lis~~~I~~~i~~lA~~I~~~~~~~~~vivgi~~Gg~~fa~~L~~~L~~~~~~~~i~fi~~~s----------y~~ 76 (189)
T PLN02238 7 IEKVLWTAEDISARVAELAAQIASDYAGKSPVVLGVATGAFMFLADLVRAIQPLPRGLTVDFIRASS----------YGG 76 (189)
T ss_pred ccEEEcCHHHHHHHHHHHHHHHHHHcCCCCcEEEEEccCCHHHHHHHHHHhCccCCCeEEEEEEeee----------cCC
Confidence 345678888888888888887754 14589999999999999999999998 653 333221 110
Q ss_pred -ccccceeEEee---cccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEeccC
Q 025851 173 -EYGKDVMEMHV---GAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 230 (247)
Q Consensus 173 -e~g~~~~~l~~---~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~~ 230 (247)
...++...+.. ....+|++|||||||++||.|+.++++.|++.|++.+.++++++++.
T Consensus 77 ~~~~~g~~~i~~~~~~~~v~gk~VliVDDIidTG~Tl~~~~~~l~~~g~~~v~~avL~dK~~ 138 (189)
T PLN02238 77 GTESSGVAKVSGADLKIDVKGKHVLLVEDIVDTGNTLSALVAHLEAKGAASVSVCALLDKRA 138 (189)
T ss_pred CccccCceeEecCCCCCCCCCCEEEEEecccchHHHHHHHHHHHHhCCCCEEEEEEEEECCc
Confidence 00112233332 23469999999999999999999999999999999999999999973
No 31
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=99.58 E-value=3.5e-15 Score=131.74 Aligned_cols=123 Identities=20% Similarity=0.215 Sum_probs=87.8
Q ss_pred ccCHHHHHHHHHHHHHHhc--cCCccEEEecC-------CcchhHHHHHHHHhCC----CeEEeeccCCCCCceeeeeee
Q 025851 105 LLDTKAFRDTIDLFVERYK--DKNISVVAGIE-------ARGFIFGPPIALAIGA----KFVPMRKPKKLPGEVISEEYS 171 (247)
Q Consensus 105 l~dp~~~~~l~~~La~~~~--~~~iDvVVgve-------~rGf~lA~~LA~~Lg~----p~v~iRK~~kl~~~~~s~~y~ 171 (247)
..+..+.+.+++.|...+. ...+|.||+|| .|||+++..||+.++. |+...|.+...++...+...+
T Consensus 88 ~~~~~l~~~la~~l~~~~~~~~~~~~~iVpVPls~~r~~~RGFNQ~~~la~~l~~~~~~~~~~~r~k~~~~q~~l~~~~r 167 (225)
T COG1040 88 QGDLDLAKLLARLLAKALDDFLEKPDLIVPVPLSPSRLLERGFNQSELLARALARRLGKPIALRRVKDTSPQQGLKALER 167 (225)
T ss_pred CCchhHHHHHHHHHHHHHhhccccCCeEEEecCCHHHHHHcCCCHHHHHHHHHHHHhCchHHHHHHhccccccccchHHH
Confidence 3556677777788877776 35789999998 6999998888888754 443334343333332222222
Q ss_pred eccccceeEEeecccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEec
Q 025851 172 LEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIEL 228 (247)
Q Consensus 172 ~e~g~~~~~l~~~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~ 228 (247)
..+-++.|.+..+.... ++|+|||||+|||+|+.++.++|++.|++.|.++++...
T Consensus 168 r~nl~~aF~~~~~~~~~-~~vlLvDDV~TTGaTl~~~~~~L~~~Ga~~v~~~~lar~ 223 (225)
T COG1040 168 RRNLKGAFRLKKGIEEP-KNVLLVDDVYTTGATLKEAAKLLREAGAKRVFVLTLARA 223 (225)
T ss_pred HHhccCCeecCCCCCCC-CeEEEEecccccHHHHHHHHHHHHHcCCceEEEEEEEec
Confidence 22345567665443223 999999999999999999999999999999999998753
No 32
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.58 E-value=1.7e-14 Score=132.31 Aligned_cols=107 Identities=24% Similarity=0.289 Sum_probs=85.3
Q ss_pred CccEEEecCCcchhHHHHHHHHhCCCeEEeeccCCCCCceeeeeeeeccccceeEEeecccCCCCEEEEEecchhhhHHH
Q 025851 126 NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTL 205 (247)
Q Consensus 126 ~iDvVVgve~rGf~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltTG~Tl 205 (247)
+-++|++++.+|..++..+|..+|+|+..++|.++.+++. .+....+...+|++|+|||||++||+|+
T Consensus 160 ~~~vVVsPd~g~~~~a~~la~~l~~~~~~~~K~R~~~~~~------------~~~~~~~~~v~Gr~vIIVDDIidTG~Tl 227 (301)
T PRK07199 160 PRPLLIGPDEESEQWVAAVAERAGAPHAVLRKTRHGDRDV------------EISLPDAAPWAGRTPVLVDDIVSTGRTL 227 (301)
T ss_pred CCcEEEEeCCChHHHHHHHHHHhCCCEEEEEEEecCCCeE------------EEEeccCcccCCCEEEEEecccCcHHHH
Confidence 3569999999999999999999999999887765322110 0111113346899999999999999999
Q ss_pred HHHHHHHHhCCCeEEEEEEEEeccCcccccccCCCCccc
Q 025851 206 SAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFV 244 (247)
Q Consensus 206 ~aa~~lLk~aGa~vV~v~vlv~~~~~~grekL~~~pv~s 244 (247)
.++++.|+++||+.+.+++.+.....++.++|.+.++..
T Consensus 228 ~~aa~~Lk~~GA~~V~~~~tHgvfs~~a~~~l~~~~i~~ 266 (301)
T PRK07199 228 IEAARQLRAAGAASPDCVVVHALFAGDAYSALAAAGIAR 266 (301)
T ss_pred HHHHHHHHHCCCcEEEEEEEeeeCChHHHHHHHhCCCCE
Confidence 999999999999999999999988777788886544443
No 33
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.56 E-value=3.1e-14 Score=129.58 Aligned_cols=103 Identities=25% Similarity=0.347 Sum_probs=83.7
Q ss_pred ccEEEecCCcchhHHHHHHHHhCCCeEEeeccCCCCCceeeeeeeeccccceeEEe-ecccCCCCEEEEEecchhhhHHH
Q 025851 127 ISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMH-VGAVQAGERALIVDDLVATGGTL 205 (247)
Q Consensus 127 iDvVVgve~rGf~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l~-~~~~~~GkrVLIVDDIltTG~Tl 205 (247)
.++|++++.+|+.+|..+|+.+|+|+.+++|.+..+.. ..+. .....+|++||||||+++||+|+
T Consensus 155 ~~vvv~pd~Ga~~~a~~lA~~l~~~~~~i~k~r~~~~~--------------~~~~~~~~~v~Gk~VlIVDDIi~TG~Tl 220 (285)
T PRK00934 155 DPLVLAPDKGALELAKEAAEILGCEYDYLEKTRISPTE--------------VEIAPKNLDVKGKDVLIVDDIISTGGTM 220 (285)
T ss_pred CCEEEEeCCchHHHHHHHHHHhCCCEEEEEEEecCCCe--------------EEEeccccccCCCEEEEEcCccccHHHH
Confidence 45999999999999999999999999988776532211 1111 11235899999999999999999
Q ss_pred HHHHHHHHhCCCeEEEEEEEEeccCcccccccCCCCcc
Q 025851 206 SAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLF 243 (247)
Q Consensus 206 ~aa~~lLk~aGa~vV~v~vlv~~~~~~grekL~~~pv~ 243 (247)
.++++.|++.||+.+.+++++.....++.++|.+.++.
T Consensus 221 ~~aa~~Lk~~GA~~V~~~~~H~i~~~~a~~~l~~~~i~ 258 (285)
T PRK00934 221 ATAIKILKEQGAKKVYVACVHPVLVGDAILKLYNAGVD 258 (285)
T ss_pred HHHHHHHHHCCCCEEEEEEEeeccCcHHHHHHHhCCCC
Confidence 99999999999999999999998877888888665443
No 34
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=99.55 E-value=7.2e-14 Score=119.33 Aligned_cols=120 Identities=15% Similarity=0.246 Sum_probs=90.4
Q ss_pred chhhccCHHHHHHHHHHHHHHhcc-----CCccEEEecCCcchhHHHHHHHHhCCCeE--EeeccCCCCCceeeeeeeec
Q 025851 101 ITTLLLDTKAFRDTIDLFVERYKD-----KNISVVAGIEARGFIFGPPIALAIGAKFV--PMRKPKKLPGEVISEEYSLE 173 (247)
Q Consensus 101 i~~ll~dp~~~~~l~~~La~~~~~-----~~iDvVVgve~rGf~lA~~LA~~Lg~p~v--~iRK~~kl~~~~~s~~y~~e 173 (247)
+..++.+.+.++..+..|+.++.+ ....+++|+..||+.||..|++.|+.|.. +++.. +|...
T Consensus 4 ~~~~l~~~~~i~~~i~~lA~~I~~~~~~~~~~~vvvgI~~Gg~~fa~~L~~~L~~~~~v~~l~~s----------sY~~~ 73 (178)
T PRK15423 4 TVEVMIPEAEIKARIAELGRQITERYKDSGSDMVLVGLLRGSFMFMADLCREVQVSHEVDFMTAS----------SYGSG 73 (178)
T ss_pred ceEEecCHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCChHHHHHHHHHhCCCcceeEEEEE----------EecCC
Confidence 345678888888888888877653 12469999999999999999999999743 33322 22100
Q ss_pred -cccceeEEee--cccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEeccC
Q 025851 174 -YGKDVMEMHV--GAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 230 (247)
Q Consensus 174 -~g~~~~~l~~--~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~~ 230 (247)
..++...+.. ....+|++|||||||++||.|+.++.+.+++.|++.+.++++++++.
T Consensus 74 ~~~~~~v~i~~~~~~~v~gk~VLlVDDIiDTG~TL~~l~~~l~~~~~~~v~~avL~~K~~ 133 (178)
T PRK15423 74 MSTTRDVKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILSLREPKSLAICTLLDKPS 133 (178)
T ss_pred CcccCceEEecCCCCCCCCCEEEEEeeecCchHHHHHHHHHHHhCCCCEEEEEEEEECCC
Confidence 0112233322 23468999999999999999999999999999999999999999973
No 35
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.54 E-value=7.1e-14 Score=129.24 Aligned_cols=107 Identities=17% Similarity=0.246 Sum_probs=84.2
Q ss_pred ccEEEecCCcchhHHHHHHHHhCCCeEEeeccCCCCCceeeeeeeeccccceeEEeecccCCCCEEEEEecchhhhHHHH
Q 025851 127 ISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLS 206 (247)
Q Consensus 127 iDvVVgve~rGf~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltTG~Tl~ 206 (247)
..+||+++.+|..+|..+|+.+|+|+.+++|++..... .....+.+ ....+|++|||||||++||+|+.
T Consensus 166 ~~vvVsPd~G~~~~A~~lA~~lg~~~~~~~k~r~~~~~---------~~~~~~~~--~gdv~Gr~viIVDDIidTG~Tl~ 234 (320)
T PRK02269 166 DVVVVSPDHGGVTRARKLAQFLKTPIAIIDKRRSVDKM---------NTSEVMNI--IGNVKGKKCILIDDMIDTAGTIC 234 (320)
T ss_pred CcEEEEECccHHHHHHHHHHHhCCCEEEEEecccCCCC---------ceeEEEEe--ccccCCCEEEEEeeecCcHHHHH
Confidence 45899999999999999999999999988775431100 00011121 12358999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEEEEEeccCcccccccCCCCccc
Q 025851 207 AAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFV 244 (247)
Q Consensus 207 aa~~lLk~aGa~vV~v~vlv~~~~~~grekL~~~pv~s 244 (247)
++++.|++.||+.|.+++.+.....++.++|.+-++..
T Consensus 235 ~aa~~Lk~~GA~~V~~~~tHglf~~~a~~~l~~~~i~~ 272 (320)
T PRK02269 235 HAADALAEAGATEVYASCTHPVLSGPALDNIQKSAIEK 272 (320)
T ss_pred HHHHHHHHCCCCEEEEEEECcccCchHHHHHHhCCCCE
Confidence 99999999999999999999998777788886544443
No 36
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.53 E-value=5.9e-14 Score=134.98 Aligned_cols=134 Identities=13% Similarity=0.144 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHhccCCccEEEecCCcchhHHHHHHHHhCCCe--EEeeccCCCCCceeeeeeeeccccceeEEee-cc
Q 025851 109 KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKF--VPMRKPKKLPGEVISEEYSLEYGKDVMEMHV-GA 185 (247)
Q Consensus 109 ~~~~~l~~~La~~~~~~~iDvVVgve~rGf~lA~~LA~~Lg~p~--v~iRK~~kl~~~~~s~~y~~e~g~~~~~l~~-~~ 185 (247)
+.-..+++.|++.+.. +.|+|+++|..|+.+|..+|+.+|+|+ ..+||+.. ....+....+..+....+.+.. ..
T Consensus 259 ~~R~~~G~~La~~~~~-~~d~Vv~vPd~g~~~A~~~A~~lgip~~~~l~rk~~~-~r~~i~~~qr~rn~~~~~~~~~~~~ 336 (445)
T PRK08525 259 EVRKKMGEELAKKFPI-KADFVVPVPDSGVPAAIGYAQESGIPFEMAIVRNHYV-GRTFIEPTQEMRNLKVKLKLNPMSK 336 (445)
T ss_pred HHHHHHHHHHHHHhcc-cCCeEEECCchHHHHHHHHHHHhCCCccceEEEeecc-ccccCCHHHHHHhhheeEEeccccc
Confidence 3445778888887754 689999999999999999999999998 44555421 1111111111111112343332 23
Q ss_pred cCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEeccCcccccccCCCCccc
Q 025851 186 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFV 244 (247)
Q Consensus 186 ~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~~~~grekL~~~pv~s 244 (247)
..+||+||||||++|||+|+.+++++|+++||+.|.+.+.+..........++.-++..
T Consensus 337 ~v~gK~VlLVDDvitTG~Tl~~a~~~Lr~aGA~~V~v~~~hp~~~~~~~~~i~~~~~~~ 395 (445)
T PRK08525 337 VLEGKRIVVIDDSIVRGTTSKKIVSLLRAAGAKEIHLRIACPEIKFPCYYGIDTPTFEE 395 (445)
T ss_pred ccCCCeEEEEecccCcHHHHHHHHHHHHhcCCCEEEEEEECCCcCCchhhhCcCCChhh
Confidence 46899999999999999999999999999999999999998876656666665434433
No 37
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=99.51 E-value=2e-13 Score=115.86 Aligned_cols=117 Identities=23% Similarity=0.342 Sum_probs=85.6
Q ss_pred hhccCHHHHHHHHHHHHHHhcc----CCccEEEecCCcchhHHHHHHHHh----CCCe--EEeeccCCCCCceeeeeeee
Q 025851 103 TLLLDTKAFRDTIDLFVERYKD----KNISVVAGIEARGFIFGPPIALAI----GAKF--VPMRKPKKLPGEVISEEYSL 172 (247)
Q Consensus 103 ~ll~dp~~~~~l~~~La~~~~~----~~iDvVVgve~rGf~lA~~LA~~L----g~p~--v~iRK~~kl~~~~~s~~y~~ 172 (247)
..+.+++.++..++.|+.++.+ .+.++|+|+..||+++|..|++.| +.|+ ..++.. +|+.
T Consensus 4 ~~l~s~~~i~~~i~~la~~i~~~~~~~~~~viv~il~gG~~~a~~La~~L~~~~~~~~~~~~l~~~----------~y~~ 73 (176)
T PRK05205 4 KEILDAEALRRALTRIAHEIIERNKGLDNLVLVGIKTRGVWLAERLAERLEQLEGVDVPVGELDIT----------LYRD 73 (176)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEccCCHHHHHHHHHHHHHHcCCCCccceEEEE----------Eeec
Confidence 4567889999999999988764 246899999999999999999999 5432 222211 1110
Q ss_pred cc---cc-ceeE-EeecccCCCCEEEEEecchhhhHHHHHHHHHHHhCC-CeEEEEEEEEecc
Q 025851 173 EY---GK-DVME-MHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVG-VHVVECACVIELP 229 (247)
Q Consensus 173 e~---g~-~~~~-l~~~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aG-a~vV~v~vlv~~~ 229 (247)
+. +. .... .......+|++|||||||++||+|+.++++.|++.| ++.+.++++++++
T Consensus 74 ~~~~~~~~~~~~~~~l~~~v~gr~VLIVDDIidTG~Tl~~~~~~L~~~G~~~~v~~avL~~K~ 136 (176)
T PRK05205 74 DLTKKGLHPQVKPTDIPFDIEGKRVILVDDVLYTGRTIRAALDALFDYGRPARVQLAVLVDRG 136 (176)
T ss_pred CccccCcccccccccCCCCCCCCEEEEEecccCcHHHHHHHHHHHHhcCCCcEEEEEEEEECC
Confidence 00 00 0010 001223689999999999999999999999999998 7899999999984
No 38
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.49 E-value=2.3e-13 Score=125.28 Aligned_cols=101 Identities=22% Similarity=0.274 Sum_probs=82.8
Q ss_pred CccEEEecCCcchhHHHHHHHHhCCCeEEeeccCCCCCceeeeeeeeccccceeEEeecccCCCCEEEEEecchhhhHHH
Q 025851 126 NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTL 205 (247)
Q Consensus 126 ~iDvVVgve~rGf~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltTG~Tl 205 (247)
+.++|++++.||+.+|..+|..+|+|+..++|.++.++.. ..+.+ ....+|++|+|||||++||+|+
T Consensus 158 ~~~vvv~pd~Gg~~~A~~la~~Lg~~~~~~~k~r~~~~~~-----------~~~~~--~~~~~g~~vliVDDii~TG~T~ 224 (309)
T PRK01259 158 ENLVVVSPDVGGVVRARALAKRLDADLAIIDKRRPRANVS-----------EVMNI--IGDVEGRDCILVDDMIDTAGTL 224 (309)
T ss_pred CCcEEEEECCCcHHHHHHHHHHhCCCEEEEEeecccceeE-----------EEEee--cccCCCCEEEEEecccCcHHHH
Confidence 5579999999999999999999999999887765432110 11122 1236899999999999999999
Q ss_pred HHHHHHHHhCCCeEEEEEEEEeccCcccccccCC
Q 025851 206 SAAIRLLERVGVHVVECACVIELPELKGRERLGE 239 (247)
Q Consensus 206 ~aa~~lLk~aGa~vV~v~vlv~~~~~~grekL~~ 239 (247)
.++++.|++.|++.+.+++.+.....++.++|.+
T Consensus 225 ~~a~~~l~~~Ga~~v~~~~tH~i~~~~a~~~l~~ 258 (309)
T PRK01259 225 CKAAEALKERGAKSVYAYATHPVLSGGAIERIEN 258 (309)
T ss_pred HHHHHHHHccCCCEEEEEEEeeeCChHHHHHHhc
Confidence 9999999999999999999998877777778754
No 39
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.47 E-value=4.3e-13 Score=124.03 Aligned_cols=106 Identities=22% Similarity=0.242 Sum_probs=84.6
Q ss_pred CccEEEecCCcchhHHHHHHHHhC-CCeEEeeccCCCCCceeeeeeeeccccceeEEeecccCCCCEEEEEecchhhhHH
Q 025851 126 NISVVAGIEARGFIFGPPIALAIG-AKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGT 204 (247)
Q Consensus 126 ~iDvVVgve~rGf~lA~~LA~~Lg-~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltTG~T 204 (247)
+..+||+++.+|..+|..+|+.++ ++++.+.|.+...+.. ..+.+ ....+|++|+|||||++||+|
T Consensus 166 ~~~vVVsPD~Ga~~rA~~lA~~L~~~~~~~~~K~R~~~~~~-----------~~~~~--~gdv~Gr~viIVDDIidTG~T 232 (319)
T PRK04923 166 DNLIVVSPDVGGVVRARAVAKRLDDADLAIIDKRRPRANVA-----------TVMNI--IGDVQGKTCVLVDDLVDTAGT 232 (319)
T ss_pred CCCEEEEECCchHHHHHHHHHHcCCCCEEEeccccCCCCce-----------EEEec--ccCCCCCEEEEEecccCchHH
Confidence 345899999999999999999998 8999888766422110 01111 123699999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEEEEeccCcccccccCCCCccc
Q 025851 205 LSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFV 244 (247)
Q Consensus 205 l~aa~~lLk~aGa~vV~v~vlv~~~~~~grekL~~~pv~s 244 (247)
+.++++.|+++||+.|.+++.+.....++.++|.+-++..
T Consensus 233 l~~aa~~Lk~~GA~~V~~~~THgvfs~~a~~~l~~s~i~~ 272 (319)
T PRK04923 233 LCAAAAALKQRGALKVVAYITHPVLSGPAVDNINNSQLDE 272 (319)
T ss_pred HHHHHHHHHHCCCCEEEEEEECcccCchHHHHHhhCCCCE
Confidence 9999999999999999999999998777778886544443
No 40
>PRK11595 DNA utilization protein GntX; Provisional
Probab=99.47 E-value=3.2e-13 Score=119.01 Aligned_cols=121 Identities=19% Similarity=0.260 Sum_probs=79.8
Q ss_pred ccCHHHHHHHHHHHHHHhc------c-CCccEEEecC-------CcchhHHHHHH----HHhCCCeE---EeeccCCCCC
Q 025851 105 LLDTKAFRDTIDLFVERYK------D-KNISVVAGIE-------ARGFIFGPPIA----LAIGAKFV---PMRKPKKLPG 163 (247)
Q Consensus 105 l~dp~~~~~l~~~La~~~~------~-~~iDvVVgve-------~rGf~lA~~LA----~~Lg~p~v---~iRK~~kl~~ 163 (247)
-.+..+.+.+++.|++.+. . ..+|.|++|| .|||+.+..+| ..+++|+. ..|.+...++
T Consensus 84 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~d~ivpVPl~~~r~~~RGfnq~~~la~~la~~~~~~~~~~~l~r~~~~~~q 163 (227)
T PRK11595 84 SRRSELASVLARLLLLEWLQARRSTGLQKPDRIISVPLHQRRHWRRGFNQSDLLCRPLARWLGCDYDSEALTRTRATATQ 163 (227)
T ss_pred CccHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEecCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCcccceEEecCCCCc
Confidence 3566777777777765431 1 2579999998 57997665555 45688763 2232222222
Q ss_pred ceeeeeeeeccccceeEEeecccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEe
Q 025851 164 EVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIE 227 (247)
Q Consensus 164 ~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~ 227 (247)
...+...+.++.++.|.+. ...+|++|||||||+|||.|+.++++.|+++|++.|.++++..
T Consensus 164 ~~l~~~~R~~n~~~~f~~~--~~~~~~~vllvDDv~tTG~Tl~~~~~~L~~~g~~~V~~~~la~ 225 (227)
T PRK11595 164 HFLSARLRKRNLKNAFRLE--LPVQGQHMAIVDDVVTTGSTVAEIAQLLLRNGAASVQVWCLCR 225 (227)
T ss_pred ccCCHHHHhhhhhhhhccC--CCCCCCEEEEEeeeecchHHHHHHHHHHHHcCCcEEEEEEEEe
Confidence 2222222222223344442 2358999999999999999999999999999999999999864
No 41
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.46 E-value=5.7e-13 Score=122.46 Aligned_cols=106 Identities=24% Similarity=0.234 Sum_probs=82.3
Q ss_pred ccEEEecCCcchhHHHHHHHHhC-CCeEEeeccCCCCCceeeeeeeeccccceeEEeecccCCCCEEEEEecchhhhHHH
Q 025851 127 ISVVAGIEARGFIFGPPIALAIG-AKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTL 205 (247)
Q Consensus 127 iDvVVgve~rGf~lA~~LA~~Lg-~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltTG~Tl 205 (247)
..+||+++.||+.+|..+|+.++ +|+.+++|.+..... +... ........+|++|+||||+++||+|+
T Consensus 149 ~~vvVspd~Ga~~~a~~la~~L~~~~~~~i~k~R~~~~~----------~~~~-~~~~~~dv~gr~viIVDDIi~TG~Tl 217 (304)
T PRK03092 149 NVTVVSPDAGRVRVAEQWADRLGGAPLAFIHKTRDPTVP----------NQVV-ANRVVGDVEGRTCVLVDDMIDTGGTI 217 (304)
T ss_pred CcEEEEecCchHHHHHHHHHHcCCCCEEEEEEEcccCCC----------CceE-EEecCcCCCCCEEEEEccccCcHHHH
Confidence 34999999999999999999999 999888765521100 0000 01112236899999999999999999
Q ss_pred HHHHHHHHhCCCeEEEEEEEEeccCcccccccCCCCcc
Q 025851 206 SAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLF 243 (247)
Q Consensus 206 ~aa~~lLk~aGa~vV~v~vlv~~~~~~grekL~~~pv~ 243 (247)
.++++.|++.|++.+.+++.+.....++.++|.+.++.
T Consensus 218 ~~aa~~Lk~~Ga~~I~~~~tH~v~~~~a~~~l~~~~~~ 255 (304)
T PRK03092 218 AGAVRALKEAGAKDVIIAATHGVLSGPAAERLKNCGAR 255 (304)
T ss_pred HHHHHHHHhcCCCeEEEEEEcccCChHHHHHHHHCCCC
Confidence 99999999999999999999888766777888654443
No 42
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=99.46 E-value=9.9e-13 Score=117.23 Aligned_cols=131 Identities=16% Similarity=0.184 Sum_probs=93.9
Q ss_pred echhhccCHHHHHHHHHHHHHHhcc---CCccEEEecCCcchhHHHHHHHHhCCCeEEeeccCCCCC---cee-eeeeee
Q 025851 100 DITTLLLDTKAFRDTIDLFVERYKD---KNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPG---EVI-SEEYSL 172 (247)
Q Consensus 100 Di~~ll~dp~~~~~l~~~La~~~~~---~~iDvVVgve~rGf~lA~~LA~~Lg~p~v~iRK~~kl~~---~~~-s~~y~~ 172 (247)
++..++.+.+.++..++.||.++.+ .+..+|+|+..||+.|+..|.+.++...-.....-..+- .++ ..+|.-
T Consensus 52 ~~~~vLis~~~I~~rI~~LA~~I~~dy~~~~~vilgILkGg~~FaadL~~~L~~~~~~~~~~~~~~~~~~dfi~vsSY~~ 131 (241)
T PTZ00149 52 YLTKILLPNGLIKDRVEKLAYDIKQVYGNEELHILCILKGSRGFFSALVDYLNRIHNYSSTESPKPPYQEHYVRVKSYCN 131 (241)
T ss_pred cccEEEeCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCCCHHHHHHHHHHHhhhhhccccccCcccccccEEEEEEccC
Confidence 5567789999999988988887764 245699999999999999999999731100000000000 122 234533
Q ss_pred ccccceeEEeec--ccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEeccC
Q 025851 173 EYGKDVMEMHVG--AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 230 (247)
Q Consensus 173 e~g~~~~~l~~~--~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~~ 230 (247)
...++.+.+... ...+|++|||||||++||.|+.++++.|++.|++.+.++++++++.
T Consensus 132 ~~s~g~v~i~~~~~~~l~gk~VLIVDDIidTG~Tl~~~~~~L~~~g~~~V~va~L~~K~~ 191 (241)
T PTZ00149 132 DESTGKLEIVSDDLSCLKDKHVLIVEDIIDTGNTLVKFCEYLKKFEPKTIRIATLFEKRT 191 (241)
T ss_pred CCcCCceEEecccccccCCCEEEEEEeEeChHHHHHHHHHHHHhcCCCEEEEEEEEecCc
Confidence 223344444322 2369999999999999999999999999999999999999999873
No 43
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.46 E-value=3.7e-13 Score=124.64 Aligned_cols=105 Identities=21% Similarity=0.240 Sum_probs=83.6
Q ss_pred ccEEEecCCcchhHHHHHHHHhCCCeEEeeccCCCCCceeeeeeeeccccceeEEeecccCCCCEEEEEecchhhhHHHH
Q 025851 127 ISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLS 206 (247)
Q Consensus 127 iDvVVgve~rGf~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltTG~Tl~ 206 (247)
..+||+++.+|..+|..+|+.+++|+..+++.+... +. + .. .+ ....+|++|+|||||++||+|+.
T Consensus 170 ~~vvV~pd~Ga~~~A~~la~~L~~~~~~~~~~r~~~-------~~-~--~~--~i--~gdV~gk~viIVDDIidTG~Tl~ 235 (323)
T PRK02458 170 DVVVVSPKNSGIKRARSLAEYLDAPIAIIDYAQDDS-------ER-E--EG--YI--IGDVAGKKAILIDDILNTGKTFA 235 (323)
T ss_pred ceEEEEECCChHHHHHHHHHHhCCCEEEEEEecCCC-------cc-e--ee--cc--ccccCCCEEEEEcceeCcHHHHH
Confidence 358999999999999999999999998777543211 00 0 00 11 12369999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEEEEEeccCcccccccCCCCcccc
Q 025851 207 AAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVL 245 (247)
Q Consensus 207 aa~~lLk~aGa~vV~v~vlv~~~~~~grekL~~~pv~sL 245 (247)
++++.|++.||+.|.+++.+.....+..++|.+-++..+
T Consensus 236 ~aa~~Lk~~GA~~V~~~~tHgif~~~a~~~l~~s~i~~i 274 (323)
T PRK02458 236 EAAKIVEREGATEIYAVASHGLFAGGAAEVLENAPIKEI 274 (323)
T ss_pred HHHHHHHhCCCCcEEEEEEChhcCchHHHHHhhCCCCEE
Confidence 999999999999999999999987777788876555443
No 44
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.45 E-value=1.6e-12 Score=113.80 Aligned_cols=119 Identities=16% Similarity=0.212 Sum_probs=88.3
Q ss_pred hhccCHHHHHHHHHHHHHHhcc---------CCccEEEecCCcchhHHHHHHHHhC---CCeEEeeccCCCCCcee-eee
Q 025851 103 TLLLDTKAFRDTIDLFVERYKD---------KNISVVAGIEARGFIFGPPIALAIG---AKFVPMRKPKKLPGEVI-SEE 169 (247)
Q Consensus 103 ~ll~dp~~~~~l~~~La~~~~~---------~~iDvVVgve~rGf~lA~~LA~~Lg---~p~v~iRK~~kl~~~~~-s~~ 169 (247)
.++.+.+.++..++.||.++.+ .+.++|+|+..|||+||..|+++|+ .|+.+ .++ ..+
T Consensus 25 ~~lis~e~I~~~i~~LA~~I~~~~~~~~~~~~~~~vivgVlkGg~~fa~dL~r~L~~~~~~~~v---------dfi~vss 95 (211)
T PTZ00271 25 HTLVTQEQVWAATAKCAKKIAEDYRSFKLTTENPLYLLCVLKGSFIFTADLARFLADEGVPVKV---------EFICASS 95 (211)
T ss_pred cEecCHHHHHHHHHHHHHHHHHHhhhccccCCCCeEEEEEcCCCHHHHHHHHHHhcccCCCeeE---------EEEEEEe
Confidence 3567888888887777776653 1367899999999999999999996 55321 011 123
Q ss_pred eee-ccccceeEEee--cccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEeccC
Q 025851 170 YSL-EYGKDVMEMHV--GAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 230 (247)
Q Consensus 170 y~~-e~g~~~~~l~~--~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~~ 230 (247)
|.. ...++.+.+.. ...++||+|||||||+.||.||.++++.|++.|++.+.++++++++.
T Consensus 96 Y~~~~~s~g~~~i~~~~~~~i~gk~VLIVDDIvDTG~TL~~v~~~l~~~~p~svk~avL~dK~~ 159 (211)
T PTZ00271 96 YGTGVETSGQVRMLLDVRDSVENRHILIVEDIVDSAITLQYLMRFMLAKKPASLKTVVLLDKPS 159 (211)
T ss_pred cCCCCcccCceEEecCCCCCCCCCEEEEEecccCCHHHHHHHHHHHHhcCCCEEEEEEEEEccc
Confidence 321 11223333322 23468999999999999999999999999999999999999999973
No 45
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=99.45 E-value=6.9e-13 Score=121.70 Aligned_cols=103 Identities=25% Similarity=0.328 Sum_probs=82.4
Q ss_pred cEEEecCCcchhHHHHHHHHhCCCeEEeeccCCCCCceeeeeeeeccccceeEEeecccCCCCEEEEEecchhhhHHHHH
Q 025851 128 SVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSA 207 (247)
Q Consensus 128 DvVVgve~rGf~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltTG~Tl~a 207 (247)
.+||+++.||...|..+|..||.++.++.|++- +.....+ .+.....++||+|+||||+++||+|+..
T Consensus 165 ~vVVSPD~Ggv~RAr~~A~~L~~~~a~i~K~R~-~~~~~v~-----------~~~~~gdV~gk~~iiVDDiIdTgGTi~~ 232 (314)
T COG0462 165 PVVVSPDKGGVKRARALADRLGAPLAIIDKRRD-SSPNVVE-----------VMNLIGDVEGKDVVIVDDIIDTGGTIAK 232 (314)
T ss_pred cEEECCCccHHHHHHHHHHHhCCCEEEEEEeec-CCCCeEE-----------EeecccccCCCEEEEEeccccccHHHHH
Confidence 699999999999999999999999998887763 2111100 1111234699999999999999999999
Q ss_pred HHHHHHhCCCeEEEEEEEEeccCcccccccCCCCc
Q 025851 208 AIRLLERVGVHVVECACVIELPELKGRERLGEKPL 242 (247)
Q Consensus 208 a~~lLk~aGa~vV~v~vlv~~~~~~grekL~~~pv 242 (247)
|+++|++.||+.|.+++.+........+++++..+
T Consensus 233 Aa~~Lk~~GAk~V~a~~tH~vfs~~a~~~l~~~~i 267 (314)
T COG0462 233 AAKALKERGAKKVYAAATHGVFSGAALERLEASAI 267 (314)
T ss_pred HHHHHHHCCCCeEEEEEEchhhChHHHHHHhcCCC
Confidence 99999999999999999999887556677765433
No 46
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.44 E-value=1.1e-12 Score=121.95 Aligned_cols=99 Identities=21% Similarity=0.206 Sum_probs=81.6
Q ss_pred ccEEEecCCcchhHHHHHHHHhCCCeEEeeccCCCCCceeeeeeeeccccceeEEeecccCCCCEEEEEecchhhhHHHH
Q 025851 127 ISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLS 206 (247)
Q Consensus 127 iDvVVgve~rGf~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltTG~Tl~ 206 (247)
-.+||+++.+|..+|..+|..+|+|+..++|.+..... ...+.+ ....+|++|+|||||++||+|+.
T Consensus 169 ~~vvVsPD~gg~~rA~~lA~~lg~~~~vi~K~r~~~~~-----------~~~~~~--~gdv~Gk~VIIVDDIi~TG~Tl~ 235 (332)
T PRK00553 169 DLVVVSPDYGGVKRARLIAESLELPLAIIDKRRPKHNV-----------AESINV--LGEVKNKNCLIVDDMIDTGGTVI 235 (332)
T ss_pred CeEEEEECCCcHHHHHHHHHHhCCCEEEEEEecCCcce-----------EeeEEe--eccCCCCEEEEEeccccchHHHH
Confidence 34899999999999999999999999998876542210 111222 12368999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEEEEEeccCcccccccC
Q 025851 207 AAIRLLERVGVHVVECACVIELPELKGRERLG 238 (247)
Q Consensus 207 aa~~lLk~aGa~vV~v~vlv~~~~~~grekL~ 238 (247)
++++.|+++||+.+.+++.+.....++.++|.
T Consensus 236 ~aa~~Lk~~GA~~V~~~atHglf~~~a~~~l~ 267 (332)
T PRK00553 236 AAAKLLKKQKAKKVCVMATHGLFNKNAIQLFD 267 (332)
T ss_pred HHHHHHHHcCCcEEEEEEEeeecCchHHHHHH
Confidence 99999999999999999999988777778874
No 47
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.42 E-value=3.3e-12 Score=108.20 Aligned_cols=122 Identities=21% Similarity=0.325 Sum_probs=94.8
Q ss_pred echhhccCHHHHHHHHHHHHHHhcc---CCccEEEecCCcchhHHHHHHHHhCCCeEEeeccCCCCCcee-eeeeeecc-
Q 025851 100 DITTLLLDTKAFRDTIDLFVERYKD---KNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVI-SEEYSLEY- 174 (247)
Q Consensus 100 Di~~ll~dp~~~~~l~~~La~~~~~---~~iDvVVgve~rGf~lA~~LA~~Lg~p~v~iRK~~kl~~~~~-s~~y~~e~- 174 (247)
++..++.+.+.+++-+..+++++.+ .+..+++|+-.|+|+|+..|.++++.|..+ ++. ..+|..+.
T Consensus 6 ~~~evLisee~I~~ri~ela~~I~~~y~g~~~~vv~iLkGs~~F~~dL~r~i~~~~e~---------dFm~vSSYg~~t~ 76 (178)
T COG0634 6 HIKEVLISEEQIKARIKELAAQITEDYGGKDPLVVGVLKGSFPFMADLIRAIDFPLEV---------DFMHVSSYGGGTS 76 (178)
T ss_pred ccceEeeCHHHHHHHHHHHHHHHHHhhCCCceEEEEEcccchhhHHHHHHhcCCCcee---------EEEEEeccCCCcc
Confidence 4555788898888888888877654 145699999999999999999999987643 111 12332211
Q ss_pred ccceeEEeec--ccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEeccC
Q 025851 175 GKDVMEMHVG--AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 230 (247)
Q Consensus 175 g~~~~~l~~~--~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~~ 230 (247)
+++.+.+.++ ...+|++|||||||+.||.||..+.++|+..||+.+.++++++++.
T Consensus 77 ssg~v~i~kDld~di~grdVLiVeDIiDsG~TLs~i~~~l~~r~a~sv~i~tLldK~~ 134 (178)
T COG0634 77 SSGEVKILKDLDEDIKGRDVLIVEDIIDSGLTLSKVRDLLKERGAKSVRIATLLDKPE 134 (178)
T ss_pred cCCceEEecccccCCCCCeEEEEecccccChhHHHHHHHHHhCCCCeEEEEEEeeCcc
Confidence 2333555443 4579999999999999999999999999999999999999999985
No 48
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=99.42 E-value=1.5e-12 Score=119.69 Aligned_cols=103 Identities=24% Similarity=0.315 Sum_probs=81.9
Q ss_pred CccEEEecCCcchhHHHHHHHHhCCCeEEeeccCCCCCceeeeeeeeccccceeEE-eecccCCCCEEEEEecchhhhHH
Q 025851 126 NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEM-HVGAVQAGERALIVDDLVATGGT 204 (247)
Q Consensus 126 ~iDvVVgve~rGf~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l-~~~~~~~GkrVLIVDDIltTG~T 204 (247)
+.++|++++.+|+.+|..+|+.+|+|+..++|.+..+.. ..+. ......+|++|+||||+++||+|
T Consensus 159 ~~~viv~pd~g~~~~A~~lA~~Lg~~~~~i~k~r~~~~~-------------~~~~~~~~~~v~g~~vliVDDii~tG~T 225 (308)
T TIGR01251 159 DNPVVVSPDAGGVERAKKVADALGCPLAIIDKRRISATN-------------EVEVMNLVGDVEGKDVVIVDDIIDTGGT 225 (308)
T ss_pred CCCEEEEECCchHHHHHHHHHHhCCCEEEEEEEecCCCC-------------EEEEEecccccCCCEEEEEccccCCHHH
Confidence 457999999999999999999999999988776542110 0011 11223589999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEEEEeccCcccccccCCCC
Q 025851 205 LSAAIRLLERVGVHVVECACVIELPELKGRERLGEKP 241 (247)
Q Consensus 205 l~aa~~lLk~aGa~vV~v~vlv~~~~~~grekL~~~p 241 (247)
+.++++.|++.|++.+.+++.+.....++.++|...+
T Consensus 226 l~~a~~~l~~~ga~~v~~~~th~v~~~~a~~~l~~~~ 262 (308)
T TIGR01251 226 IAKAAEILKSAGAKRVIAAATHGVFSGPAIERIANAG 262 (308)
T ss_pred HHHHHHHHHhcCCCEEEEEEEeeecCcHHHHHHHhCC
Confidence 9999999999999999999999876666777765443
No 49
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=99.40 E-value=1.1e-12 Score=127.62 Aligned_cols=114 Identities=18% Similarity=0.223 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHhccCCccEEEecCCcchhHHHHHHHHhCCCeEEeeccCCCCCceeeee-eeeccccceeEEe-eccc
Q 025851 109 KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEE-YSLEYGKDVMEMH-VGAV 186 (247)
Q Consensus 109 ~~~~~l~~~La~~~~~~~iDvVVgve~rGf~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~-y~~e~g~~~~~l~-~~~~ 186 (247)
+.-..+++.|++... .++|+|+++|..|+++|..+|+++|+|+.....+++..+.+..+. ........++.+. ....
T Consensus 296 ~~R~~~G~~La~~~~-~~~DvVv~VP~sg~~~A~g~A~~lgip~~~~L~r~~y~grtfi~p~q~~R~~~~~~kl~~~~~~ 374 (500)
T PRK07349 296 SYRQRLGQQLAKESP-VDADLVIGVPDSGIPAAIGFSQASGIPYAEGLIKNRYVGRTFIQPTQSMRESGIRMKLNPLKDV 374 (500)
T ss_pred HHHHHHHHHHhhhcc-cCCcEEEEeccccHHHHHHHHHHHCCCchhceEEEeccCccccCCCHHHHHhhhheeeeccccc
Confidence 344477788876543 468999999999999999999999999974322222222221111 0000000112221 1234
Q ss_pred CCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEE
Q 025851 187 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECA 223 (247)
Q Consensus 187 ~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~ 223 (247)
.+||+||||||++|||+|+.+++++|+++||+.|.+.
T Consensus 375 ~~gkrVlLVDDvIttGtTl~~~~~~Lr~aGAkeV~~~ 411 (500)
T PRK07349 375 LAGKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMR 411 (500)
T ss_pred cCCCEEEEEeceeCCcHHHHHHHHHHHHhCCeEEEEE
Confidence 6899999999999999999999999999999998765
No 50
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.39 E-value=3.1e-12 Score=120.86 Aligned_cols=104 Identities=21% Similarity=0.309 Sum_probs=82.3
Q ss_pred CccEEEecCCcchhHHHHHHHHhCCCeEEeeccCCCCCceeeeeeeeccccce-eEEee-cccCCCCEEEEEecchhhhH
Q 025851 126 NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDV-MEMHV-GAVQAGERALIVDDLVATGG 203 (247)
Q Consensus 126 ~iDvVVgve~rGf~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~e~g~~~-~~l~~-~~~~~GkrVLIVDDIltTG~ 203 (247)
+..+||+++.+|...|..+|..+|+|+++++|++...... .++.. ..+.. +...+|++||||||+++||+
T Consensus 207 ~~~VVVsPD~Gg~~rA~~~A~~Lg~~~ai~~K~R~~~~~~--------~g~~~~~~~~~~g~dV~gr~vIIVDDII~TG~ 278 (382)
T PRK06827 207 DHLMVISPDTGAMDRAKYYASVLGVDLGLFYKRRDYSRVV--------NGRNPIVAHEFLGRDVEGKDVLIVDDMIASGG 278 (382)
T ss_pred CCcEEEEECccchHHHHHHHHHhCCCEEEEEcccCCcccc--------cCCCceEEEecCCcccCCCEEEEEeCCcCcHH
Confidence 3569999999999999999999999999998876422110 01111 11221 32468999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEEEEEEeccCcccccccC
Q 025851 204 TLSAAIRLLERVGVHVVECACVIELPELKGRERLG 238 (247)
Q Consensus 204 Tl~aa~~lLk~aGa~vV~v~vlv~~~~~~grekL~ 238 (247)
|+..+++.|++.|++.+.+++.+.... +|.++|.
T Consensus 279 Tl~~aa~~Lk~~GA~~V~~~~tH~vf~-~a~~~l~ 312 (382)
T PRK06827 279 SMIDAAKELKSRGAKKIIVAATFGFFT-NGLEKFD 312 (382)
T ss_pred HHHHHHHHHHHcCCCEEEEEEEeecCh-HHHHHHH
Confidence 999999999999999999999999865 7777764
No 51
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=99.38 E-value=8.7e-13 Score=128.62 Aligned_cols=115 Identities=18% Similarity=0.213 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHhccCCccEEEecCCcchhHHHHHHHHhCCCeEE--eeccCCCCCce-e--eeeeeeccccceeEEee
Q 025851 109 KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP--MRKPKKLPGEV-I--SEEYSLEYGKDVMEMHV 183 (247)
Q Consensus 109 ~~~~~l~~~La~~~~~~~iDvVVgve~rGf~lA~~LA~~Lg~p~v~--iRK~~kl~~~~-~--s~~y~~e~g~~~~~l~~ 183 (247)
.+.+.+++.+...+...+.|+|+++|..|..+|..+|+.+|+|+.. ++++. .+.+ + .+..+...-+..|...
T Consensus 276 ~lg~~LA~~l~~~~~~~~~D~VvpVP~s~~~~A~~la~~lgip~~~~l~k~~~--~~rt~i~~~q~~R~~~vr~~f~~~- 352 (501)
T PRK09246 276 RMGEKLAEKIKREWPDLDIDVVIPIPDTSRDAALEIARILGVPYREGFVKNRY--VGRTFIMPGQAQRKKSVRQKLNAI- 352 (501)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEeCccHHHHHHHHHHHHCCCccceEEEEec--ccccccCcCHHHHHHHHHhhcCCc-
Confidence 4444455554444443457999999999999999999999999853 33221 1111 1 0111111112233322
Q ss_pred cccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEE
Q 025851 184 GAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI 226 (247)
Q Consensus 184 ~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv 226 (247)
....+||+||||||++|||+|+.+++++|+++||+.|.++++.
T Consensus 353 ~~~v~gK~VlLVDDvitTGaTl~~~~~~L~~aGA~~V~v~v~a 395 (501)
T PRK09246 353 RAEFKGKNVLLVDDSIVRGTTSEQIVQMAREAGAKKVYFASAA 395 (501)
T ss_pred cccccCCeEEEEeccccccHHHHHHHHHHHHcCCCEEEEEEEc
Confidence 2246899999999999999999999999999999999988884
No 52
>PLN02440 amidophosphoribosyltransferase
Probab=99.38 E-value=1.6e-12 Score=126.19 Aligned_cols=112 Identities=20% Similarity=0.262 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhccCCccEEEecCCcchhHHHHHHHHhCCCeE--EeeccCCCCCce-eeeeeeeccccceeEEee-cccC
Q 025851 112 RDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFV--PMRKPKKLPGEV-ISEEYSLEYGKDVMEMHV-GAVQ 187 (247)
Q Consensus 112 ~~l~~~La~~~~~~~iDvVVgve~rGf~lA~~LA~~Lg~p~v--~iRK~~kl~~~~-~s~~y~~e~g~~~~~l~~-~~~~ 187 (247)
..+++.|++.+.. ++|+|+++|.+|+.+|..+|+.+|+|+. ++|.+. .+.+ +............+.+.. ....
T Consensus 262 ~~~g~~La~~~~~-~~d~vvpVP~s~~~~A~~la~~lgiP~~~~lvr~ry--~~rt~i~~~q~~r~~~~~~k~~~~~~~v 338 (479)
T PLN02440 262 LEFGEILATEIPV-DCDVVIPVPDSGRVAALGYAAKLGVPFQQGLIRSHY--VGRTFIEPSQKIRDFSVKLKLNPVRSVL 338 (479)
T ss_pred HHHHHHHHHhcCC-CCCEEEEeCCcHHHHHHHHHHHhCCCchhheEEEee--ccccccCcchhhhhhhheeeeecccccc
Confidence 3666778876653 6899999999999999999999999986 344322 1221 111110001111222221 1336
Q ss_pred CCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEE
Q 025851 188 AGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI 226 (247)
Q Consensus 188 ~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv 226 (247)
+||+||||||++|||+|+.+++++|+++||+.|.++++.
T Consensus 339 ~gk~VlLVDDiittGtTl~~i~~~L~~aGa~~V~v~v~~ 377 (479)
T PLN02440 339 EGKRVVVVDDSIVRGTTSSKIVRMLREAGAKEVHMRIAS 377 (479)
T ss_pred cCceEEEEeceeCcHHHHHHHHHHHHhcCCCEEEEEEEC
Confidence 899999999999999999999999999999999988886
No 53
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.38 E-value=2.1e-12 Score=124.96 Aligned_cols=117 Identities=18% Similarity=0.201 Sum_probs=82.0
Q ss_pred HHHHHHHHHhccCCccEEEecCCcchhHHHHHHHHhCCCeEEeeccCCCCCce-eeeeeeeccccceeEEee-cccCCCC
Q 025851 113 DTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEV-ISEEYSLEYGKDVMEMHV-GAVQAGE 190 (247)
Q Consensus 113 ~l~~~La~~~~~~~iDvVVgve~rGf~lA~~LA~~Lg~p~v~iRK~~kl~~~~-~s~~y~~e~g~~~~~l~~-~~~~~Gk 190 (247)
.+++.|++.... +.|+|+++|..|..+|..+|+.+|+|+.....+++..+.+ +..+.........+.+.. ....+||
T Consensus 276 ~~G~~La~~~~~-~~D~Vv~vPdsg~~~A~~~A~~lgip~~~~l~r~~~~~rtfi~~~q~~R~~~~~~k~~~~~~~v~gk 354 (469)
T PRK05793 276 RAGRQLYKEYPV-DADIVIGVPDSGIPAAIGYAEASGIPYGIGFIKNKYVGRTFIAPSQELRERAVRVKLNPLKVNVEGK 354 (469)
T ss_pred HHHHHHHHhcCC-CCCEEEEcCccHHHHHHHHHHHhCCCEeeeEEEeeeccccccChhHhhhhhhheEecccCccccCCC
Confidence 788888887653 6899999999999999999999999996531111111111 111100000111222211 1346899
Q ss_pred EEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEeccC
Q 025851 191 RALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 230 (247)
Q Consensus 191 rVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~~ 230 (247)
+||||||+++||+|+.++++.|+++||+.|.+.+.+..-.
T Consensus 355 ~VlLVDD~ItTGtTl~~~~~~Lr~aGAk~V~~~~~~p~~~ 394 (469)
T PRK05793 355 RVVLIDDSIVRGTTSKRLVELLRKAGAKEVHFRVSSPPVK 394 (469)
T ss_pred EEEEEccccCchHHHHHHHHHHHHcCCCEEEEEEECCCcC
Confidence 9999999999999999999999999999999888876543
No 54
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.36 E-value=5.7e-12 Score=122.31 Aligned_cols=112 Identities=18% Similarity=0.204 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHhccCCccEEEecCCcchhHHHHHHHHhCCCeE--EeeccCCCCCceeeeeeeeccccceeEEee---
Q 025851 109 KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFV--PMRKPKKLPGEVISEEYSLEYGKDVMEMHV--- 183 (247)
Q Consensus 109 ~~~~~l~~~La~~~~~~~iDvVVgve~rGf~lA~~LA~~Lg~p~v--~iRK~~kl~~~~~s~~y~~e~g~~~~~l~~--- 183 (247)
++-+.+++.|++.... ++|+|+++|.+|+++|..+|+.+|+|+. ++|++. .+.+..+.-. ......+.+..
T Consensus 279 ~~R~~~g~~La~~~~~-~~D~Vv~VP~sg~~~A~~la~~lgip~~~~lir~~y--~grt~i~~~q-~~r~~~v~~k~~~~ 354 (479)
T PRK09123 279 EVRKNIGRELARESPV-DADVVVPVPDSGVPAAIGYAQESGIPFELGIIRNHY--VGRTFIQPTQ-QIRNLGVKLKHNAN 354 (479)
T ss_pred HHHHHHHHHHHHhCCC-CCeEEEEcCccHHHHHHHHHHhcCCCeeheEEEEee--cCcccccccc-ccccccEEEEeccc
Confidence 4555777888876653 7899999999999999999999999996 344322 2222111100 00112233322
Q ss_pred cccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEE
Q 025851 184 GAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECAC 224 (247)
Q Consensus 184 ~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~v 224 (247)
....+||+||||||+++||+|+.++++.|+++|++.|.+.+
T Consensus 355 ~~~~~gk~vvlvDD~i~tG~Tl~~~~~~l~~~Ga~~v~~~~ 395 (479)
T PRK09123 355 RAVIEGKRVVLVDDSIVRGTTSRKIVQMLRDAGAKEVHLRI 395 (479)
T ss_pred ccccCCCEEEEEeceeCchHHHHHHHHHHHHcCCCEEEEEE
Confidence 23468999999999999999999999999999999998876
No 55
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=99.35 E-value=2e-12 Score=125.17 Aligned_cols=112 Identities=19% Similarity=0.219 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHhccCCccEEEecCCcchhHHHHHHHHhCCCeEE--eeccCCCCCceee---eeeeeccccceeEEee
Q 025851 109 KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP--MRKPKKLPGEVIS---EEYSLEYGKDVMEMHV 183 (247)
Q Consensus 109 ~~~~~l~~~La~~~~~~~iDvVVgve~rGf~lA~~LA~~Lg~p~v~--iRK~~kl~~~~~s---~~y~~e~g~~~~~l~~ 183 (247)
+.-..+++.|++... .++|+|+++|..|.+.|..+|+.+|+|+.. +|++. .+.+.. ...+...-+..|...
T Consensus 267 ~~R~~~G~~La~~~~-~~~D~vv~VP~s~~~~A~~~a~~~gip~~~~lik~~~--~~rt~~~~~~~~R~~~v~~~f~~~- 342 (471)
T PRK06781 267 AARKNMGKRLAAEAP-IEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRY--VGRTFIQPSQELREQGVKMKLSAV- 342 (471)
T ss_pred HHHHHHHHHHhhhCC-CCCcEEEEcChhHHHHHHHHHHHhCCCcccceEEEcc--CCCCCcCCCHHHHHHHHhcceecc-
Confidence 344588888988764 368999999999999999999999999964 33222 111111 111111123345432
Q ss_pred cccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEE
Q 025851 184 GAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECAC 224 (247)
Q Consensus 184 ~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~v 224 (247)
....+||+|+||||++|||+|+.+++++|+++||+.|.+.+
T Consensus 343 ~~~i~gk~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~v~i 383 (471)
T PRK06781 343 RGVVEGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRI 383 (471)
T ss_pred ccccCCceEEEEeceeccchHHHHHHHHHHHcCCcEEEEEE
Confidence 23468999999999999999999999999999999887654
No 56
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.34 E-value=2.3e-12 Score=123.86 Aligned_cols=113 Identities=18% Similarity=0.171 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHhccCCccEEEecCCcchhHHHHHHHHhCCCeEE-eeccCCCCCcee-eeee--eeccccceeEEeecc
Q 025851 110 AFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP-MRKPKKLPGEVI-SEEY--SLEYGKDVMEMHVGA 185 (247)
Q Consensus 110 ~~~~l~~~La~~~~~~~iDvVVgve~rGf~lA~~LA~~Lg~p~v~-iRK~~kl~~~~~-s~~y--~~e~g~~~~~l~~~~ 185 (247)
.-..+++.|++... .++|+|+++|..|+.+|..+|+.+|+|+.. +.|. +..+.+. .... +.......+... ..
T Consensus 258 ~R~~~g~~La~~~~-~~~D~Vv~VP~sg~~~A~~la~~lgip~~~~l~r~-~~~~r~~i~~~q~~R~~~v~~k~~~~-~~ 334 (442)
T TIGR01134 258 ARKRMGEKLARESP-VEADVVIPVPDSGRSAALGFAQASGIPYREGLIKN-RYVGRTFIMPTQELRELSVRLKLNPI-RE 334 (442)
T ss_pred HHHHHHHHHHHhcC-CCCEEEEEccCCHHHHHHHHHHHhCCCchHHeEEe-ccccccccCCCHHHHHHHHhhhcccc-cc
Confidence 34477788887654 378999999999999999999999999864 2222 2122111 1000 101111122211 23
Q ss_pred cCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEE
Q 025851 186 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACV 225 (247)
Q Consensus 186 ~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vl 225 (247)
..+||+||||||++|||+|+.+++++|+++|++.|.+.+.
T Consensus 335 ~~~gk~v~lvDD~ittG~T~~~~~~~l~~~ga~~v~~~~~ 374 (442)
T TIGR01134 335 VFRGKRVVLVDDSIVRGTTSRQIVKMLRDAGAKEVHVRIA 374 (442)
T ss_pred cCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEEc
Confidence 4589999999999999999999999999999999998776
No 57
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=99.34 E-value=1.1e-11 Score=113.85 Aligned_cols=101 Identities=23% Similarity=0.269 Sum_probs=80.9
Q ss_pred cEEEecCCcchhHHHHHHHHh-CCCeEEeeccCCCCCceeeeeeeeccccceeEEeecccCCCCEEEEEecchhhhHHHH
Q 025851 128 SVVAGIEARGFIFGPPIALAI-GAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLS 206 (247)
Q Consensus 128 DvVVgve~rGf~lA~~LA~~L-g~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltTG~Tl~ 206 (247)
-+|++++.+|..+|..++..+ ++|+..++|.++.... ...+.+ ....+|++|+||||+++||+|+.
T Consensus 153 ~vvVspd~gg~~~a~~~a~~l~~~~~~~l~k~R~~~~~-----------~~~~~~--~~~v~g~~viivDDii~TG~Tl~ 219 (302)
T PLN02369 153 LVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNV-----------AEVMNL--IGDVKGKVAIMVDDMIDTAGTIT 219 (302)
T ss_pred eEEEEECcChHHHHHHHHHHcCCCCEEEEEEecCCcce-----------eeeEec--CCCCCCCEEEEEcCcccchHHHH
Confidence 389999999999999999999 7999988876542110 011111 22358999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEEEEEeccCcccccccCCCC
Q 025851 207 AAIRLLERVGVHVVECACVIELPELKGRERLGEKP 241 (247)
Q Consensus 207 aa~~lLk~aGa~vV~v~vlv~~~~~~grekL~~~p 241 (247)
++++.|++.|++.+.+++.+.....++.++|.+-+
T Consensus 220 ~a~~~l~~~Ga~~v~~~~tH~v~~~~a~~~l~~~~ 254 (302)
T PLN02369 220 KGAALLHQEGAREVYACATHAVFSPPAIERLSSGL 254 (302)
T ss_pred HHHHHHHhCCCCEEEEEEEeeeeCHHHHHHHHhCC
Confidence 99999999999999999988877777888876533
No 58
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.33 E-value=2.8e-12 Score=124.45 Aligned_cols=111 Identities=17% Similarity=0.261 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhccCCccEEEecCCcchhHHHHHHHHhCCCeEE-eeccCCCCCcee---eeeeeeccccceeEEeecccC
Q 025851 112 RDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP-MRKPKKLPGEVI---SEEYSLEYGKDVMEMHVGAVQ 187 (247)
Q Consensus 112 ~~l~~~La~~~~~~~iDvVVgve~rGf~lA~~LA~~Lg~p~v~-iRK~~kl~~~~~---s~~y~~e~g~~~~~l~~~~~~ 187 (247)
..+++.|++.+.. ++|+|++||..|..+|..+|+.+|+|+.. +.| ++..+.+. .+..+....+..|... ....
T Consensus 272 ~~lg~~La~~~~~-~~D~VvpVPnqa~~lA~~la~~lgip~~~~lvk-~~~~~rt~~~~~q~~R~~~vr~~f~~~-~~~~ 348 (484)
T PRK07272 272 KRMGKRLAQEFPH-DADIVIGVPNSSLSAASGYAEESGLPYEMGLVK-NQYVARTFIQPTQELREQGVRMKLSAV-SGVV 348 (484)
T ss_pred HHHHHHHHhhcCC-CCCEEEEecHHHHHHHHHHHHHHCCCcccCeEE-EccCCccccCCCHHHHHHHHhhCcccc-cccc
Confidence 5778888876643 57999999999999999999999999853 222 22222111 1111111112334322 2346
Q ss_pred CCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEE
Q 025851 188 AGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACV 225 (247)
Q Consensus 188 ~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vl 225 (247)
+||+||||||++|||+|+.+++++|+++|++.|.+.+.
T Consensus 349 ~gk~vllVDDvittG~T~~~~~~~L~~~Ga~~v~~~~~ 386 (484)
T PRK07272 349 KGKRVVMVDDSIVRGTTSRRIVQLLKEAGAKEVHVAIA 386 (484)
T ss_pred CCCEEEEEccccCchHHHHHHHHHHHhcCCcEEEEEEe
Confidence 89999999999999999999999999999999999999
No 59
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=99.33 E-value=7.8e-12 Score=115.92 Aligned_cols=109 Identities=23% Similarity=0.213 Sum_probs=82.5
Q ss_pred HHHHHHHhcc---CCccEEEecCCcchhHHHHHHHHhCCCeEEeeccCCCCCceeeeeeeeccccceeEEeecccCCCCE
Q 025851 115 IDLFVERYKD---KNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGER 191 (247)
Q Consensus 115 ~~~La~~~~~---~~iDvVVgve~rGf~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l~~~~~~~Gkr 191 (247)
...+++++.. .+-.+||+++.+|...+..++ +++|++.+.|.+. + +....+......+|++
T Consensus 169 ~~~l~~~i~~~~~~~~~vvVsPD~Ga~~ra~~~a--~~~~~~~~~K~R~--g------------~~~~~~~~~~dv~gr~ 232 (326)
T PLN02297 169 IPLLKKRLQQLPDSDNIVIAFPDDGAWKRFHKQF--EHFPMVVCTKVRE--G------------DKRIVRIKEGNPAGRH 232 (326)
T ss_pred HHHHHHHHHhccccCCcEEEecCccHHHHHHHHc--CCCCEEEEEeEEC--C------------CceEEEecccccCCCe
Confidence 3445555432 133589999999998877766 5889998877652 1 1111122233469999
Q ss_pred EEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEeccCcccccccCC
Q 025851 192 ALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGE 239 (247)
Q Consensus 192 VLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~~~~grekL~~ 239 (247)
|+|||||++||+|+.++++.|++.|++.+.+++.+.....++.++|.+
T Consensus 233 vlIVDDIidTG~Tl~~aa~~L~~~Ga~~V~~~~THglfs~~a~~~l~~ 280 (326)
T PLN02297 233 VVIVDDLVQSGGTLIECQKVLAAHGAAKVSAYVTHGVFPNESWERFTH 280 (326)
T ss_pred EEEEecccCcHHHHHHHHHHHHHCCCcEEEEEEECcccChhHHHHHHh
Confidence 999999999999999999999999999999999999987777778764
No 60
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=99.32 E-value=7.2e-12 Score=108.19 Aligned_cols=112 Identities=21% Similarity=0.309 Sum_probs=80.4
Q ss_pred hccCHHHHHHHHHHHHHHhc--cCCccEEEecCCcchhHHHHHHHHhCC-CeEEeeccCCCCCceeeeeeeecc-cccee
Q 025851 104 LLLDTKAFRDTIDLFVERYK--DKNISVVAGIEARGFIFGPPIALAIGA-KFVPMRKPKKLPGEVISEEYSLEY-GKDVM 179 (247)
Q Consensus 104 ll~dp~~~~~l~~~La~~~~--~~~iDvVVgve~rGf~lA~~LA~~Lg~-p~v~iRK~~kl~~~~~s~~y~~e~-g~~~~ 179 (247)
.+.+.+.++.++..+|+++. +.++|+|+++.+||+.+|..|+..|++ |+..+.- +.|.... .....
T Consensus 5 ~~vSw~~I~~~~~~lA~kI~~s~~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v----------~~y~~~~~~~~~~ 74 (192)
T COG2236 5 LYVSWEEIHRLCRALAEKIRASGFKPDVIVAIARGGLIPARILSDFLGVKPLYSIKV----------EHYDETAERDGEA 74 (192)
T ss_pred EEecHHHHHHHHHHHHHHHHHcCCCCCEEEEEcCCceehHHHHHHHhCCCceEEEEE----------EEehhhcccCCcc
Confidence 45678888999999999987 378999999999999999999999998 4443321 1121110 01122
Q ss_pred EEeec---ccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEE
Q 025851 180 EMHVG---AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACV 225 (247)
Q Consensus 180 ~l~~~---~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vl 225 (247)
.+... ....||+|||||||.+||.||..+.+.|++.....+.++++
T Consensus 75 ~v~~~~~~d~l~GkkVLIVDDI~DTG~Tl~~a~~~l~~~~p~e~rta~l 123 (192)
T COG2236 75 KVKYPITIDPLSGKKVLIVDDIVDTGETLELALEELKKLAPAEVRTAVL 123 (192)
T ss_pred eeecCccccccCCCeEEEEecccCchHhHHHHHHHHHhhCchhhhhhhh
Confidence 22221 11689999999999999999999999999954444443333
No 61
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.32 E-value=1.2e-11 Score=114.96 Aligned_cols=104 Identities=23% Similarity=0.295 Sum_probs=82.4
Q ss_pred ccEEEecCCcchhHHHHHHHHhC-CCeEEeeccCCCCCceeeeeeeeccccceeEEeecccCCCCEEEEEecchhhhHHH
Q 025851 127 ISVVAGIEARGFIFGPPIALAIG-AKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTL 205 (247)
Q Consensus 127 iDvVVgve~rGf~lA~~LA~~Lg-~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltTG~Tl 205 (247)
-.+||+++.+|..+|..+|..++ .|+..+.|++..... ...+.+ ....+|++|+||||+++||+|+
T Consensus 180 ~~vvVsPD~gg~~ra~~~A~~L~~~~~~~~~k~R~~~~~-----------~~~~~~--~~~v~g~~viiVDDii~TG~T~ 246 (330)
T PRK02812 180 DIVVVSPDVGGVARARAFAKKLNDAPLAIIDKRRQAHNV-----------AEVLNV--IGDVKGKTAILVDDMIDTGGTI 246 (330)
T ss_pred CeEEEEECCccHHHHHHHHHHhCCCCEEEEEeeccCCce-----------eeeEec--cccCCCCEEEEEccccCcHHHH
Confidence 45999999999999999999995 899988776532110 011111 1236899999999999999999
Q ss_pred HHHHHHHHhCCCeEEEEEEEEeccCcccccccCCCCcc
Q 025851 206 SAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLF 243 (247)
Q Consensus 206 ~aa~~lLk~aGa~vV~v~vlv~~~~~~grekL~~~pv~ 243 (247)
.++++.|++.|++.+.+++.+.....++.++|.+.++.
T Consensus 247 ~~a~~~L~~~Ga~~v~~~~tH~v~s~~a~~~l~~~~id 284 (330)
T PRK02812 247 CEGARLLRKEGAKQVYACATHAVFSPPAIERLSSGLFE 284 (330)
T ss_pred HHHHHHHhccCCCeEEEEEEcccCChHHHHHHhhCCCC
Confidence 99999999999999999999988777778888644443
No 62
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=99.32 E-value=9.3e-12 Score=121.53 Aligned_cols=113 Identities=18% Similarity=0.173 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHhccCCccEEEecCCcchhHHHHHHHHhCCCeEEeeccCCCCCceeeeeeeeccccceeEEee---cc
Q 025851 109 KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHV---GA 185 (247)
Q Consensus 109 ~~~~~l~~~La~~~~~~~iDvVVgve~rGf~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l~~---~~ 185 (247)
+.-..+++.|++... .+.|+|+++|.+|++.|..+|+.+|+|+.....+++..+.+...... ...+..+.+.. ..
T Consensus 286 ~~R~~~G~~La~~~~-~~~D~VvpVP~sG~~~A~g~a~~~gip~~~~l~kn~~~grtfi~~~q-~~r~~~~r~k~~~~~~ 363 (510)
T PRK07847 286 AARVEIGRRLAREHP-VEADLVIPVPESGTPAAVGYAQESGIPFGQGLVKNAYVGRTFIQPSQ-TIRQLGIRLKLNPLRE 363 (510)
T ss_pred HHHHHHHHHHHhhCC-CCCeEEEeccCchHHHHHHHHHHhCCChhhceEeecccccCccCcch-hhhhhceeeecCcccc
Confidence 444588888988654 46899999999999999999999999986533222222211111000 00111122221 23
Q ss_pred cCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEE
Q 025851 186 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECA 223 (247)
Q Consensus 186 ~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~ 223 (247)
..+||+||||||++|||+|+.+++++|+++|++.|.+.
T Consensus 364 ~~~gk~vllVDD~ittG~T~~~~~~~L~~~ga~~v~~r 401 (510)
T PRK07847 364 VIRGKRLVVVDDSIVRGNTQRALVRMLREAGAAEVHVR 401 (510)
T ss_pred ccCCCEEEEEecccCchHHHHHHHHHHHHcCCCEEEEE
Confidence 46999999999999999999999999999999987754
No 63
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.31 E-value=1.7e-11 Score=117.41 Aligned_cols=106 Identities=23% Similarity=0.268 Sum_probs=84.8
Q ss_pred ccEEEecCCcchhHHHHHHHHhC------CCeEEeeccCCCCCceeeeeeeeccccceeEEeecccCCCCEEEEEecchh
Q 025851 127 ISVVAGIEARGFIFGPPIALAIG------AKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVA 200 (247)
Q Consensus 127 iDvVVgve~rGf~lA~~LA~~Lg------~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIlt 200 (247)
..+||+++.+|...|..+|..|+ +++.++.|.+..+++.. .+.+ ...++|++|+|||||++
T Consensus 280 ~pVVVsPD~Ga~~RAr~~A~~L~~~~~~~~~~avl~K~R~~~~~v~-----------~~~l--vgdV~Gk~vIIVDDIId 346 (439)
T PTZ00145 280 KPVIVSPDAGGVYRARKFQDGLNHRGISDCGIAMLIKQRTKPNEIE-----------KMDL--VGNVYDSDVIIVDDMID 346 (439)
T ss_pred ccEEEccCcchHHHHHHHHHHhccccccCCCEEEEEeecCCCCceE-----------EEec--cCCCCCCEEEEEcceeC
Confidence 45899999999999999999997 68888877654332111 1121 22469999999999999
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEEEEEeccCcccccccCCCCcccc
Q 025851 201 TGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVL 245 (247)
Q Consensus 201 TG~Tl~aa~~lLk~aGa~vV~v~vlv~~~~~~grekL~~~pv~sL 245 (247)
||+|+.++++.|++.||+.|.+++.+.....++.++|.+-++..+
T Consensus 347 TG~Tl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~rl~~s~i~~I 391 (439)
T PTZ00145 347 TSGTLCEAAKQLKKHGARRVFAFATHGLFSGPAIERIEASPLEEV 391 (439)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEEEcccCChhHHHHHhcCCCCEE
Confidence 999999999999999999999999999988777888876555443
No 64
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.30 E-value=1e-11 Score=119.45 Aligned_cols=112 Identities=19% Similarity=0.206 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHhccCCccEEEecCCcchhHHHHHHHHhCCCeEE-eeccCCCCCcee-eeeeeeccccceeEEee-cc
Q 025851 109 KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP-MRKPKKLPGEVI-SEEYSLEYGKDVMEMHV-GA 185 (247)
Q Consensus 109 ~~~~~l~~~La~~~~~~~iDvVVgve~rGf~lA~~LA~~Lg~p~v~-iRK~~kl~~~~~-s~~y~~e~g~~~~~l~~-~~ 185 (247)
+.-..+++.|++... .++|+|+++|..|..+|..+|+.+|+|+.. +.|.+ ..+.+. ....+ + ....+.+.. ..
T Consensus 255 ~~R~~~G~~La~~~~-~~~D~Vv~VPdsg~~~A~~~a~~lgip~~~~l~k~r-~~~rtfi~~~qr-~-~~~~~k~~~~~~ 330 (442)
T PRK08341 255 SARYRMGVELARESP-AEGDVVIAVPDSGRTAALGFAHESGIPYMEGLIKNR-YIGRTFIMPSGR-E-LKVKLKLSPVRE 330 (442)
T ss_pred HHHHHHHHHhhcccC-CCCceEEEecCchHHHHHHHHHHhCCCchheEEEec-cccccccCcCch-h-hhheeeeccccc
Confidence 344477888887654 368999999999999999999999999974 33322 111111 11110 0 011122211 23
Q ss_pred cCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEE
Q 025851 186 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECAC 224 (247)
Q Consensus 186 ~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~v 224 (247)
..+||+||||||++|||+|+.+++++|+++||+.|.+.+
T Consensus 331 ~v~gk~VlLVDD~IttGtTl~~~~~~L~~aGAk~V~~~~ 369 (442)
T PRK08341 331 VINGKRVVLVDDSIVRGTTMKRIVKMLRDAGAREVHVRI 369 (442)
T ss_pred ccCCCEEEEEeeeeccHHHHHHHHHHHHhcCCcEEEEEE
Confidence 468999999999999999999999999999999888765
No 65
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=99.30 E-value=1.2e-11 Score=119.94 Aligned_cols=110 Identities=16% Similarity=0.225 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhccCCccEEEecCCcchhHHHHHHHHhCCCeEE--eeccCCCCCceeeeeeeeccccceeEEee---cc
Q 025851 111 FRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP--MRKPKKLPGEVISEEYSLEYGKDVMEMHV---GA 185 (247)
Q Consensus 111 ~~~l~~~La~~~~~~~iDvVVgve~rGf~lA~~LA~~Lg~p~v~--iRK~~kl~~~~~s~~y~~e~g~~~~~l~~---~~ 185 (247)
-..+++.|++... .+.|+|+++|..|+..|..+|+.+|+|+.. +|.+.... +.+..... .....+.+.. ..
T Consensus 277 R~~~G~~La~~~~-~~~D~VvpVP~s~~~~A~g~a~~~gip~~~~L~r~r~~~r-~fi~~~q~--~R~~~~~~kl~~~~~ 352 (474)
T PRK06388 277 RVRMGMRLAKESP-VEADVVVPVPDSGRSQAIGFSMASGIPYTEGLIKNRYSER-TFIMPTQS--DRKAAIKLKLNPIRE 352 (474)
T ss_pred HHHHHHHHHhhcc-CCCcEEEeeCCCcHHHHHHHHHHhCCCchhheEEecccCC-cccCCchh--hhhhceeEEeccccc
Confidence 3477888887653 468999999999999999999999999964 23222111 11111100 0111223321 22
Q ss_pred cCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEE
Q 025851 186 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECAC 224 (247)
Q Consensus 186 ~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~v 224 (247)
..+||+||||||++|||+|+.+++++|+++||+.|.+..
T Consensus 353 ~i~gk~VlLVDDsittGtTl~~~~~~L~~aGak~V~~ri 391 (474)
T PRK06388 353 VISGKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRI 391 (474)
T ss_pred cccCceEEEEeCeECcHHHHHHHHHHHHHcCCCEEEEEe
Confidence 458999999999999999999999999999999887653
No 66
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=99.28 E-value=7.4e-12 Score=121.33 Aligned_cols=112 Identities=18% Similarity=0.178 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhccCCccEEEecCCcchhHHHHHHHHhCCCeEE--eeccCCCCCceeee---eeeeccccceeEEeec
Q 025851 110 AFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP--MRKPKKLPGEVISE---EYSLEYGKDVMEMHVG 184 (247)
Q Consensus 110 ~~~~l~~~La~~~~~~~iDvVVgve~rGf~lA~~LA~~Lg~p~v~--iRK~~kl~~~~~s~---~y~~e~g~~~~~l~~~ 184 (247)
.-..+++.|++... .++|+|+++|..|..+|..+|+.+|+|+.. +|++. .+.+..+ ..+...-+..|... .
T Consensus 268 ~R~~~G~~La~~~~-~~~D~VvpVP~s~~~~A~gla~~~gip~~~~lik~~~--~~Rt~i~~~~~~R~~nv~~~f~~~-~ 343 (475)
T PRK07631 268 ARKNLGKRLALEAP-VEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRY--VGRTFIQPSQALREQGVKMKLSPV-R 343 (475)
T ss_pred HHHHHHHHHHhhCC-CCCcEEEEechhHHHHHHHHHHHHCCCcccceEEEec--CCCCCcCCCHHHHHHHHhhhhhhc-c
Confidence 44478888887654 468999999999999999999999999964 33222 1111111 11111112234322 2
Q ss_pred ccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEE
Q 025851 185 AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACV 225 (247)
Q Consensus 185 ~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vl 225 (247)
...+||+||||||++|||+|+.+++++|+++||+.|.+..-
T Consensus 344 ~~v~gk~VlLVDDsittGtTl~~~~~~L~~aGA~eV~v~~~ 384 (475)
T PRK07631 344 GVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRIS 384 (475)
T ss_pred cccCCceEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEe
Confidence 34689999999999999999999999999999998876543
No 67
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=99.21 E-value=3.5e-11 Score=103.12 Aligned_cols=119 Identities=24% Similarity=0.242 Sum_probs=76.8
Q ss_pred ccEEEecCCcchhHHHHHHHHhCCCeEEeeccCCCC----------Ccee-e---eee---eeccccceeEEeecccCCC
Q 025851 127 ISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLP----------GEVI-S---EEY---SLEYGKDVMEMHVGAVQAG 189 (247)
Q Consensus 127 iDvVVgve~rGf~lA~~LA~~Lg~p~v~iRK~~kl~----------~~~~-s---~~y---~~e~g~~~~~l~~~~~~~G 189 (247)
--+||+...+|..-|..+|.+|++.|.++.+.++.. .+.. . ..+ .....+..-.+..-..++|
T Consensus 4 naVIVa~~~g~akRAts~Ad~L~l~~avih~e~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~e~~~~~vVGDV~g 83 (184)
T PF14572_consen 4 NAVIVAKDPGGAKRATSFADRLRLGFAVIHGERRDSESDGVDGRHSPPMSRSAAVSSSEEIPEMTPKEKPPMNVVGDVKG 83 (184)
T ss_dssp GEEEEESSGGGHHHHHHHHHHCT-EEEEE------------------------------------------EEEES--TT
T ss_pred CCEEEeCCCCchHhHHHHHHHhCCCeeEecCccccccccccccccCCCccccccccccchhhhcccCcccceEEEEEccC
Confidence 358999999999999999999999998886543210 0000 0 000 0000001101111123699
Q ss_pred CEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEeccCcccccccCCCCcccc
Q 025851 190 ERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVL 245 (247)
Q Consensus 190 krVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~~~~grekL~~~pv~sL 245 (247)
+.++||||+++||+|+.+++++|++.||+.|++++.+.....+..++|++.++..+
T Consensus 84 k~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V~~~aTHgvfs~~A~~~l~~s~Id~v 139 (184)
T PF14572_consen 84 KICIIVDDIIDTGGTLIKAAELLKERGAKKVYACATHGVFSGDAPERLEESPIDEV 139 (184)
T ss_dssp SEEEEEEEEESSTHHHHHHHHHHHHTTESEEEEEEEEE---TTHHHHHHHSSESEE
T ss_pred CeEeeecccccchHHHHHHHHHHHHcCCCEEEEEEeCcccCchHHHHHhhcCCeEE
Confidence 99999999999999999999999999999999999999988777888876665544
No 68
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.05 E-value=4.3e-10 Score=107.29 Aligned_cols=113 Identities=19% Similarity=0.202 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHhccCCccEEEecCCcchhHHHHHHHHhCCCeEEeeccCCCCCceeeeeeeeccccceeEEee---ccc
Q 025851 110 AFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHV---GAV 186 (247)
Q Consensus 110 ~~~~l~~~La~~~~~~~iDvVVgve~rGf~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l~~---~~~ 186 (247)
.-..+++.|++...- +.|+|++||..|.+.|...|+++|+|+..-.-+++..+.|+...-. +.....+.++. ...
T Consensus 268 ~R~~mG~~La~e~~~-eaDvVipVPDSg~~aAig~A~~sGiPy~~GliKNrYvgRTFI~P~q-~~R~~~Vr~KLnpvr~~ 345 (470)
T COG0034 268 ARKRMGEKLAEEIPV-EADVVIPVPDSGRPAAIGYARASGIPYEEGLIKNRYVGRTFIMPTQ-ELREKGVRLKLNPVREV 345 (470)
T ss_pred HHHHHHHHHHHhCCc-cccEEEecCCCChHHHHHHHHHhCCchhhccccccccceeeeCCcH-HHHHhhhhhhcCchHHH
Confidence 445788888887653 6799999999999999999999999997543344444444322110 00111222222 245
Q ss_pred CCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEE
Q 025851 187 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECAC 224 (247)
Q Consensus 187 ~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~v 224 (247)
.+||||+||||-+-.|+|++..+++|+++||+.|.+..
T Consensus 346 v~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvri 383 (470)
T COG0034 346 VKGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRI 383 (470)
T ss_pred hCCCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEe
Confidence 79999999999999999999999999999999988654
No 69
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.02 E-value=3.3e-09 Score=89.16 Aligned_cols=116 Identities=23% Similarity=0.300 Sum_probs=79.3
Q ss_pred hccCHHHHHHHHHHHHHHhcc----CCccEEEecCCcchhHHHHHHHHhC------CCeEEeeccCCCCCceeeeeeeec
Q 025851 104 LLLDTKAFRDTIDLFVERYKD----KNISVVAGIEARGFIFGPPIALAIG------AKFVPMRKPKKLPGEVISEEYSLE 173 (247)
Q Consensus 104 ll~dp~~~~~l~~~La~~~~~----~~iDvVVgve~rGf~lA~~LA~~Lg------~p~v~iRK~~kl~~~~~s~~y~~e 173 (247)
.+.|++.++..+..++.++.+ .+--+++|+.+||.++|..|++.++ +|+..+- ..-|+-.
T Consensus 5 ~ild~~~i~RtitRia~eIiErnk~~~~~vlvGIktrGv~lA~rl~~~i~~~Eg~~vp~g~lD----------It~yRDD 74 (179)
T COG2065 5 EILDEAAIRRTITRIAHEIIERNKGLDNLVLVGIKTRGVPLAERLAERIEELEGIEVPVGELD----------ITLYRDD 74 (179)
T ss_pred EeCCHHHHHHHHHHHHHHHHHHhCCCCceEEEeEecCCHHHHHHHHHHHHHHhCCCCCeeeEE----------eEEeech
Confidence 457788877766666655543 2333899999999999999999874 3443221 0111111
Q ss_pred cccce-eEEe-e----cccCCCCEEEEEecchhhhHHHHHHHHHHHhCC-CeEEEEEEEEecc
Q 025851 174 YGKDV-MEMH-V----GAVQAGERALIVDDLVATGGTLSAAIRLLERVG-VHVVECACVIELP 229 (247)
Q Consensus 174 ~g~~~-~~l~-~----~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aG-a~vV~v~vlv~~~ 229 (247)
..... +... + .....||+|+|||||+-||.|+++|++.|-..| +..+..+|+++++
T Consensus 75 l~~~~~~~p~~~~t~~~~di~~k~VILVDDVLytGRTIRAAldal~d~GRPa~I~LavLVDRG 137 (179)
T COG2065 75 LTQKGPLRPQAKTTILPFDITGKRVILVDDVLYTGRTIRAALDALVDYGRPAKIQLAVLVDRG 137 (179)
T ss_pred hhhcCccCCcccCccCcccccCCEEEEEeeecccCccHHHHHHHHHhcCCcceEEEEEEEcCC
Confidence 00000 0000 0 123689999999999999999999999999998 6789999999985
No 70
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=98.99 E-value=2.8e-09 Score=93.01 Aligned_cols=99 Identities=22% Similarity=0.300 Sum_probs=71.9
Q ss_pred cEEEecCCcchhHHHHHHHHhC-CCeEEeeccCCCCCceeeeeeeeccccceeEEeecccCCCCEEEEEecchhhhHHHH
Q 025851 128 SVVAGIEARGFIFGPPIALAIG-AKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLS 206 (247)
Q Consensus 128 DvVVgve~rGf~lA~~LA~~Lg-~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltTG~Tl~ 206 (247)
-++|++..+|+.++..+++.++ +++..+.+.+.. .+. +............+|++||||||+++||+|+.
T Consensus 72 ~vvV~IlrgG~~~~~~l~~~l~~~~~~~i~~~r~~--~t~--------~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~ 141 (209)
T PRK00129 72 LVIVPILRAGLGMVDGVLKLIPSARVGHIGLYRDE--ETL--------EPVEYYVKLPEDIDERTVIVVDPMLATGGSAI 141 (209)
T ss_pred EEEEEEeCCCHHHHHHHHHhCCcCeeeeEEEEeCC--CCC--------CCEEEEeeCCCcCCCCEEEEECCcccchHHHH
Confidence 3888999999999999999997 344443322210 000 00001111223458999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEEEEEeccCcccccccC
Q 025851 207 AAIRLLERVGVHVVECACVIELPELKGRERLG 238 (247)
Q Consensus 207 aa~~lLk~aGa~vV~v~vlv~~~~~~grekL~ 238 (247)
++++.|++.|++.+.+++++..+ .|.+++.
T Consensus 142 ~ai~~L~~~G~~~I~~~~ll~~~--~gl~~l~ 171 (209)
T PRK00129 142 AAIDLLKKRGAKNIKVLCLVAAP--EGIKALE 171 (209)
T ss_pred HHHHHHHHcCCCEEEEEEEecCH--HHHHHHH
Confidence 99999999999999999998876 5777764
No 71
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=98.91 E-value=7.7e-09 Score=90.14 Aligned_cols=97 Identities=22% Similarity=0.270 Sum_probs=70.9
Q ss_pred cEEEecCCcchhHHHHHHHHhC-CCeEEeeccCCCCCceeeeeeeeccccce--eEEeecccCCCCEEEEEecchhhhHH
Q 025851 128 SVVAGIEARGFIFGPPIALAIG-AKFVPMRKPKKLPGEVISEEYSLEYGKDV--MEMHVGAVQAGERALIVDDLVATGGT 204 (247)
Q Consensus 128 DvVVgve~rGf~lA~~LA~~Lg-~p~v~iRK~~kl~~~~~s~~y~~e~g~~~--~~l~~~~~~~GkrVLIVDDIltTG~T 204 (247)
-++|++-.+|+.++..+.+.+. +++..+.+.+. +...+. ..........|++||||||+++||+|
T Consensus 70 i~~V~ILrgg~~~~~~l~~~l~~~~v~~i~~~r~------------~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~T 137 (207)
T TIGR01091 70 IVLVPILRAGLGMVDGVLKLIPEAKVGHVGAYRN------------EETLKPVPYYSKLPEDIDERTVIVLDPMLATGGT 137 (207)
T ss_pred EEEEEEeCCcHHHHHHHHHhCCcCceeEEEEEeC------------CCCCCCEEEEecCCCCCCCCEEEEECCCccchHH
Confidence 4788889999999999999986 34433322211 000111 11111234689999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEEEEeccCcccccccC
Q 025851 205 LSAAIRLLERVGVHVVECACVIELPELKGRERLG 238 (247)
Q Consensus 205 l~aa~~lLk~aGa~vV~v~vlv~~~~~~grekL~ 238 (247)
+.++++.|++.|++.+.+++++..+ .|.+++.
T Consensus 138 l~~ai~~L~~~G~~~I~v~~ll~~~--~gl~~l~ 169 (207)
T TIGR01091 138 MIAALDLLKKRGAKKIKVLSIVAAP--EGIEAVE 169 (207)
T ss_pred HHHHHHHHHHcCCCEEEEEEEecCH--HHHHHHH
Confidence 9999999999999999999998876 5777764
No 72
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=98.90 E-value=6.5e-09 Score=94.54 Aligned_cols=122 Identities=23% Similarity=0.230 Sum_probs=92.1
Q ss_pred hhhccCHHHHHHHHHHHHHHhccCCccEEEecCCcchhHHHHHHHHhCCCeEEeeccCCCCCceeeeeeeeccccceeEE
Q 025851 102 TTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEM 181 (247)
Q Consensus 102 ~~ll~dp~~~~~l~~~La~~~~~~~iDvVVgve~rGf~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l 181 (247)
.+++..|..++.+... ..+.+.-+||.++.||.--+..+|..|+.-|..+.|.++... +-+..-+
T Consensus 143 dnly~~p~~l~~ir~~----~~~~~~~vivSPdaGgaKR~~s~ad~l~~~fali~ker~k~~-----------~v~~~m~ 207 (316)
T KOG1448|consen 143 DNLYAEPAVLNYIREN----IPDSENAVIVSPDAGGAKRVTSLADRLNLDFALIHKERRKAN-----------EVDIRMV 207 (316)
T ss_pred hhhccchHHHHHHHhh----CCCccceEEECCCcchhhhhHHHHHhhcchhhhhhhhhhccc-----------ccceEEE
Confidence 6777777776655433 444555689999999999999999999998877654432110 0110111
Q ss_pred eecccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEeccCcccccccCC
Q 025851 182 HVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGE 239 (247)
Q Consensus 182 ~~~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~~~~grekL~~ 239 (247)
..+ .++||.++||||++.|++|+..+++.|.++||+.|++++.+........|++..
T Consensus 208 LVG-Dv~gkvailVDDm~dt~GTl~~aa~~L~~~GA~kV~a~~THgVfs~~a~er~~~ 264 (316)
T KOG1448|consen 208 LVG-DVKGKVAILVDDMADTCGTLIKAADKLLEHGAKKVYAIVTHGVFSGPAIERLNE 264 (316)
T ss_pred EEe-ccCCcEEEEecccccccchHHHHHHHHHhcCCceEEEEEcceeccccHHHHhhh
Confidence 123 369999999999999999999999999999999999999999987777777654
No 73
>KOG3367 consensus Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.73 E-value=6.8e-08 Score=81.97 Aligned_cols=129 Identities=18% Similarity=0.308 Sum_probs=90.5
Q ss_pred eEEechhhccCHHHHHHHHHHHHHHhcc---CCccEEEecCCcchhHHHHHHHHhCCCeEEeecc-CCCCC--cee-eee
Q 025851 97 MFQDITTLLLDTKAFRDTIDLFVERYKD---KNISVVAGIEARGFIFGPPIALAIGAKFVPMRKP-KKLPG--EVI-SEE 169 (247)
Q Consensus 97 ~f~Di~~ll~dp~~~~~l~~~La~~~~~---~~iDvVVgve~rGf~lA~~LA~~Lg~p~v~iRK~-~kl~~--~~~-s~~ 169 (247)
..-|++.++.-..+...-.+.||..+.+ ..+-+++|+..||+.|-+.|-+++.- |.. +.+|- .++ .++
T Consensus 28 y~~Dls~v~ip~gli~dr~~rlakDi~~~~g~~~i~~lcVlkG~ykF~adLve~l~n-----~~s~~~~pmtvDFIR~kS 102 (216)
T KOG3367|consen 28 YTGDLSGVVIPHGLIRDRVERLAKDIMKEIGNKPIIFLCVLKGGYKFFADLVERLKN-----RNSDRPLPMTVDFIRAKS 102 (216)
T ss_pred ecccccccccccchhhhHHHHhhhhhhhccCCCceEEEEEecchhHHHHHHHHHHhh-----cccCCCcceeeeeeehhh
Confidence 4457888888888888888888876654 23458999999999888888887632 111 11110 111 134
Q ss_pred eeeccccceeEEee-c--ccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEeccC
Q 025851 170 YSLEYGKDVMEMHV-G--AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 230 (247)
Q Consensus 170 y~~e~g~~~~~l~~-~--~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~~ 230 (247)
|.....++.+.+-- + .-..||+|||||||+.||.||......+++.+++.+.++.+..++.
T Consensus 103 Y~n~~stg~iqiig~d~l~~ltgK~VliVeDIvdTGrTl~~Lls~~~~~k~~~v~vasLL~Krt 166 (216)
T KOG3367|consen 103 YCNDQSTGDIQIIGGDDLSTLTGKNVLIVEDIVDTGRTLSTLLSHMKAYKPSMVKVASLLVKRT 166 (216)
T ss_pred hcCCcccCCceeecCCCHHHhcCCcEEEEEeeccccchHHHHHHHHHhcCccceeeeeeccccc
Confidence 43333333333221 1 1368999999999999999999999999999999999999998764
No 74
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=98.72 E-value=8.9e-08 Score=83.53 Aligned_cols=118 Identities=25% Similarity=0.315 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHhccCCccEEEecCCcchhHHHHHHHHhCCCe--EEeeccCCCC-----------Cceeeeeeee---
Q 025851 109 KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKF--VPMRKPKKLP-----------GEVISEEYSL--- 172 (247)
Q Consensus 109 ~~~~~l~~~La~~~~~~~iDvVVgve~rGf~lA~~LA~~Lg~p~--v~iRK~~kl~-----------~~~~s~~y~~--- 172 (247)
++.+.++..++..- ..+.-+|++++.+|++.|..+|+.||.|+ +++||-+... +......|..
T Consensus 9 dAGr~La~~l~~~~-~~~~~iVlaLpRGGvpva~evA~~lga~ldvliVrKiG~P~n~E~aiGAvae~g~~v~n~~~~~~ 87 (220)
T COG1926 9 DAGRKLAQELAALR-DLKDVIVLALPRGGVPVAFEVAQALGAPLDVLIVRKIGAPGNPELAIGAVAEGGDVVLNYDVVRS 87 (220)
T ss_pred HHHHHHHHHHHhhc-cCCCcEEEEecCCCchHHHHHHHHhCCCeeEEEEeecCCCCCchhceeeeccCCcEecchhhhhh
Confidence 44555656555432 12345899999999999999999999997 4467754321 1100000100
Q ss_pred -----ccc-----cceeEE-------eec---ccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEe
Q 025851 173 -----EYG-----KDVMEM-------HVG---AVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIE 227 (247)
Q Consensus 173 -----e~g-----~~~~~l-------~~~---~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~ 227 (247)
++- ...-|+ +.+ ...+|+.|+||||=++||.||.++++.+++.+++.+.+++-+.
T Consensus 88 ~~i~~~~i~~~~~~e~~El~rrr~~yr~~~~~~~~~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAVPV~ 162 (220)
T COG1926 88 LGIDDAYIEAAAARERKELLRRREAYRGGRPVPSLKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAVPVA 162 (220)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEEeCCcchhHHHHHHHHHHHhcCCceEEEEcccC
Confidence 000 000011 111 2368999999999999999999999999999999888877664
No 75
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=98.63 E-value=3.3e-08 Score=92.64 Aligned_cols=137 Identities=18% Similarity=0.206 Sum_probs=90.9
Q ss_pred HhcccccCCCCCCCCceEEechhhccCHHHHHHHHHHHHHHhccCCccEEEecCCcchhHHHHHHHHhCCCeEEeeccCC
Q 025851 81 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKK 160 (247)
Q Consensus 81 l~~~ir~~p~fp~~gi~f~Di~~ll~dp~~~~~l~~~La~~~~~~~iDvVVgve~rGf~lA~~LA~~Lg~p~v~iRK~~k 160 (247)
.+.-|-.+-.|-+|.-+|..++-. ..-..+++.|+. ....++|+|.++|..|..-|...|...|+||.....+++
T Consensus 251 ~~~cIFEyvYFArpdSi~eG~sVY----~~R~~~G~~LA~-e~P~d~DvVi~VPdS~~~aAlgyA~~sG~py~e~l~rnr 325 (474)
T KOG0572|consen 251 MAFCIFEYVYFARPDSIFEGQSVY----TVRLQCGEQLAT-EAPVDADVVIPVPDSGTTAALGYAAKSGLPYQEVLIRNR 325 (474)
T ss_pred ccceeeeEEEeccCCceecccchH----HHHHHHHhHhhh-cCCcccceEEecCCchhHHHHHHHHHhCCchhhhhhhcc
Confidence 344444455566665554444322 112255666665 344689999999999999999999999999987654554
Q ss_pred CCCceeeeeeeec--cc-cceeEEeecccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEE
Q 025851 161 LPGEVISEEYSLE--YG-KDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECA 223 (247)
Q Consensus 161 l~~~~~s~~y~~e--~g-~~~~~l~~~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~ 223 (247)
.-|.++.+.-... .+ +.+|-.. .....||||+||||-+..|+|+...+++|+++||+.|...
T Consensus 326 YvGRTFI~P~q~iR~~~V~~Kl~~l-~~~~~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh~r 390 (474)
T KOG0572|consen 326 YVGRTFIEPNQRIRQLGVKKKLGPL-RQNFEGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHIR 390 (474)
T ss_pred cccceecCccHHHHHhhhhhhcccc-hhhcCCceEEEEecceeccCchHHHHHHHHHcCCcEEEEE
Confidence 4444443221100 01 1112111 2346999999999999999999999999999999988754
No 76
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=98.04 E-value=0.0001 Score=63.71 Aligned_cols=143 Identities=20% Similarity=0.254 Sum_probs=92.7
Q ss_pred CCCCceEEec---hhhccCHHHHHHHHHHHHHHhcc--CCccEEEecCCcchhHHHHHHHHhCCCeEEee-ccCCCCCce
Q 025851 92 PKPGIMFQDI---TTLLLDTKAFRDTIDLFVERYKD--KNISVVAGIEARGFIFGPPIALAIGAKFVPMR-KPKKLPGEV 165 (247)
Q Consensus 92 p~~gi~f~Di---~~ll~dp~~~~~l~~~La~~~~~--~~iDvVVgve~rGf~lA~~LA~~Lg~p~v~iR-K~~kl~~~~ 165 (247)
||-+.+|+.- ..+=.+|.....+...|+..+.+ .+.-+++|...-.--++..++..++-...++. .+...++..
T Consensus 14 pKR~fLfVSkVLGKHiPv~P~~~~~~~~~La~~~~~~~~~~~lvIGfAETATgLG~~V~~~~~~~~~ylhTTR~~v~~~~ 93 (191)
T PF15609_consen 14 PKRAFLFVSKVLGKHIPVRPSVMRDAGRLLAAQVPEALPGPVLVIGFAETATGLGHGVFDALGAACLYLHTTREPVPGVP 93 (191)
T ss_pred CCceeEEEecccCcccCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEhHHHHHHHHHHHHHhhhccceeeeccccCCCCc
Confidence 4445554333 23346799999999999998876 36679999998888999999999985443332 233445411
Q ss_pred eeeeeeecc--ccce-eEEee-cccCCCCEEEEEecchhhhHHHHHHHHHHHhC-CCeEEEEEEEEeccCcccc
Q 025851 166 ISEEYSLEY--GKDV-MEMHV-GAVQAGERALIVDDLVATGGTLSAAIRLLERV-GVHVVECACVIELPELKGR 234 (247)
Q Consensus 166 ~s~~y~~e~--g~~~-~~l~~-~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~a-Ga~vV~v~vlv~~~~~~gr 234 (247)
..-.+.-+. .++. ++... ..+...+.+++|||=+|||.|....++.|.+. .-+.+.++++++-.....+
T Consensus 94 ~~~~F~E~HSHAt~h~ly~~~~~~l~~~~~lVLVDDEiSTG~T~lnli~al~~~~p~~~yvvasL~d~~~~~~~ 167 (191)
T PF15609_consen 94 PLLEFEEEHSHATDHLLYPPDPDLLRNARTLVLVDDEISTGNTFLNLIRALHAKYPRKRYVVASLLDWRSEEDR 167 (191)
T ss_pred cceeeeccccccccceecCCChHHhcCCCCEEEEecCccchHHHHHHHHHHHHhCCCceEEEEEEeeCCCHHHH
Confidence 111121111 1222 22111 23445779999999999999999999999875 4556777888886543333
No 77
>PLN02541 uracil phosphoribosyltransferase
Probab=98.04 E-value=1.3e-05 Score=71.87 Aligned_cols=51 Identities=35% Similarity=0.617 Sum_probs=41.5
Q ss_pred cCCCCEEEEEecchhhhHHHHHHHHHHHhCCCe--EEEEEEEEeccCcccccccC
Q 025851 186 VQAGERALIVDDLVATGGTLSAAIRLLERVGVH--VVECACVIELPELKGRERLG 238 (247)
Q Consensus 186 ~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~--vV~v~vlv~~~~~~grekL~ 238 (247)
+..+++|||+||+++||+|+.+++++|++.|++ .+.+++++.-+ .|-+++.
T Consensus 154 i~~~~~VlllDpmLATGgS~~~ai~~L~~~Gv~~~~I~~v~~ias~--~Gl~~i~ 206 (244)
T PLN02541 154 FPEGSRVLVVDPMLATGGTIVAAIDELVSRGASVEQIRVVCAVAAP--PALKKLS 206 (244)
T ss_pred cCCCCEEEEECcchhhhHHHHHHHHHHHHcCCCcccEEEEEEEECH--HHHHHHH
Confidence 345789999999999999999999999999987 56666666654 4776654
No 78
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=97.34 E-value=0.0023 Score=55.75 Aligned_cols=94 Identities=23% Similarity=0.324 Sum_probs=62.6
Q ss_pred EEEecCCcchhHHHHHHHHh-CCCeEEe--ec-cCCCCCceeeeeeeeccccceeEE-eecccCCCCEEEEEecchhhhH
Q 025851 129 VVAGIEARGFIFGPPIALAI-GAKFVPM--RK-PKKLPGEVISEEYSLEYGKDVMEM-HVGAVQAGERALIVDDLVATGG 203 (247)
Q Consensus 129 vVVgve~rGf~lA~~LA~~L-g~p~v~i--RK-~~kl~~~~~s~~y~~e~g~~~~~l-~~~~~~~GkrVLIVDDIltTG~ 203 (247)
++|++.+.|..+...+...+ ++++..+ .+ ..+ .+-.++. +-.....+++|+|+|-+++||+
T Consensus 70 ~~V~IlRaG~~m~~~~~~~~p~a~~g~i~i~r~~~t--------------~~p~~~y~~LP~~i~~~~VillDpmlaTG~ 135 (207)
T PF14681_consen 70 CIVPILRAGLPMLEGFREVFPDARVGHIGIQRDEET--------------LEPVLYYNKLPEDIENRKVILLDPMLATGG 135 (207)
T ss_dssp EEEEETTTHHHHHHHHHHHSTTSEEEEEEEEEETTT--------------SSEEEEEEE--TTGTTSEEEEEESEESSSH
T ss_pred EEEEEeCCcHHHHHHHHHhCCCcceEEEEEEEcCCc--------------cceeeeHhhCCCCccCCEEEEEeccccchh
Confidence 67778899999888888877 3444333 11 111 0011111 1122348899999999999999
Q ss_pred HHHHHHHHHHhCCC--eEEEEEEEEeccCcccccccC
Q 025851 204 TLSAAIRLLERVGV--HVVECACVIELPELKGRERLG 238 (247)
Q Consensus 204 Tl~aa~~lLk~aGa--~vV~v~vlv~~~~~~grekL~ 238 (247)
|+.++++.|++.|. +.+.+++++.-+ .|-+++.
T Consensus 136 s~~~ai~~L~~~G~~~~~I~~v~~ias~--~Gl~~l~ 170 (207)
T PF14681_consen 136 SAIAAIEILKEHGVPEENIIIVSVIASP--EGLERLL 170 (207)
T ss_dssp HHHHHHHHHHHTTG-GGEEEEEEEEEEH--HHHHHHH
T ss_pred hHHHHHHHHHHcCCCcceEEEEEEEecH--HHHHHHH
Confidence 99999999999886 566666666554 3666653
No 79
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=97.31 E-value=0.00085 Score=58.87 Aligned_cols=96 Identities=21% Similarity=0.257 Sum_probs=64.6
Q ss_pred EEEecCCcchhHHHHHHHHhC-CCeEEe-eccCCCCCceeeeeeeeccccceeEEee-cccCCCCEEEEEecchhhhHHH
Q 025851 129 VVAGIEARGFIFGPPIALAIG-AKFVPM-RKPKKLPGEVISEEYSLEYGKDVMEMHV-GAVQAGERALIVDDLVATGGTL 205 (247)
Q Consensus 129 vVVgve~rGf~lA~~LA~~Lg-~p~v~i-RK~~kl~~~~~s~~y~~e~g~~~~~l~~-~~~~~GkrVLIVDDIltTG~Tl 205 (247)
++|++-+.|..+...+.+.+- ++.-.+ -.+.+.. .+...+..+ ....+++.|+|+|=+++||+|+
T Consensus 73 ~~V~ILRAGl~m~~gl~~~~P~a~vG~ig~~Rdeet------------~~p~~yy~KLP~~~~~~~viv~DPMLATG~s~ 140 (210)
T COG0035 73 VIVPILRAGLGMVEGLLKLIPSARVGHIGIYRDEET------------LEPVLYYEKLPEDIDERTVIVLDPMLATGGSA 140 (210)
T ss_pred EEEEEeeccccHHHHHHHhCCcceEEEEEEEecCcc------------CceehhHHhCCCcccCCeEEEECchhhccHhH
Confidence 556777888888888887752 111111 0111100 111111111 2246899999999999999999
Q ss_pred HHHHHHHHhC-CCeEEEEEEEEeccCcccccccC
Q 025851 206 SAAIRLLERV-GVHVVECACVIELPELKGRERLG 238 (247)
Q Consensus 206 ~aa~~lLk~a-Ga~vV~v~vlv~~~~~~grekL~ 238 (247)
.++++.|++. |++.+.+++++.-++ |-+++.
T Consensus 141 i~ai~~L~~~G~~~~I~~v~~vAape--Gi~~v~ 172 (210)
T COG0035 141 IAAIDLLKKRGGPKNIKVVSLVAAPE--GIKAVE 172 (210)
T ss_pred HHHHHHHHHhCCCceEEEEEEEecHH--HHHHHH
Confidence 9999999999 899999999998774 666654
No 80
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=96.25 E-value=0.07 Score=48.17 Aligned_cols=135 Identities=19% Similarity=0.164 Sum_probs=85.1
Q ss_pred hhccCHHHHHHHHHHHHHHhccCCccEEEecCCcchhHHHHHHHHhCCCeEEeeccCC-----------CCCceeeeee-
Q 025851 103 TLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKK-----------LPGEVISEEY- 170 (247)
Q Consensus 103 ~ll~dp~~~~~l~~~La~~~~~~~iDvVVgve~rGf~lA~~LA~~Lg~p~v~iRK~~k-----------l~~~~~s~~y- 170 (247)
++-.+|-+++.+ .+.+.+.+..+||+-..+-..-|...|++|.+.+..+.-..+ .|.++.....
T Consensus 148 nlraspfllqyi----qe~ipdyrnavivaksp~~akka~syaerlrlglavihge~k~~e~d~~dgr~spp~~~~~t~~ 223 (354)
T KOG1503|consen 148 NLRASPFLLQYI----QEEIPDYRNAVIVAKSPGVAKKAQSYAERLRLGLAVIHGEQKDTESDLVDGRHSPPPVVTATTH 223 (354)
T ss_pred ccccCHHHHHHH----HHhCccccceEEEecCcchhhHHHhHHHHHhhceeEeeccccccccccccCCcCCCCccccccC
Confidence 344555444433 334444455677777777778889999998887776643221 1111111000
Q ss_pred -eecc------ccceeEEeecccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEeccCcccccccCCCCcc
Q 025851 171 -SLEY------GKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLF 243 (247)
Q Consensus 171 -~~e~------g~~~~~l~~~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~~~~grekL~~~pv~ 243 (247)
..+- .+..+.+. ..+.|+-.++|||+++---+..++++.|++.||-.+++.+.++.-...+-..|+..|+.
T Consensus 224 ~~~~lp~~~~k~kppltvv--gdvggriaimvddiiddvqsfvaaae~lkergaykiyv~athgllssdapr~lees~id 301 (354)
T KOG1503|consen 224 PSLELPAQISKEKPPLTVV--GDVGGRIAIMVDDIIDDVQSFVAAAEVLKERGAYKIYVMATHGLLSSDAPRLLEESPID 301 (354)
T ss_pred ccccCchhhcccCCCeEEE--eccCceEEEEehhhHHhHHHHHHHHHHHHhcCceEEEEEeecccccccchhhhhcCCCc
Confidence 0000 00111111 23578889999999999999999999999999999999999987665665566665544
No 81
>PF15610 PRTase_3: PRTase ComF-like
Probab=94.82 E-value=0.29 Score=44.72 Aligned_cols=41 Identities=17% Similarity=0.336 Sum_probs=34.5
Q ss_pred eeEEeecccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeE
Q 025851 178 VMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHV 219 (247)
Q Consensus 178 ~~~l~~~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~v 219 (247)
.+.+.+.. ..|+.+|.+|||..||++-..+.+.+++.|++-
T Consensus 128 ~y~ID~~~-l~gk~lIflDDIkITGshE~~V~~~~~~~~~~~ 168 (274)
T PF15610_consen 128 TYHIDKEF-LSGKHLIFLDDIKITGSHEDKVRKILKEYGLEN 168 (274)
T ss_pred ceEecHHH-hCCcEEEEeccEEecCcHHHHHHHHHHHcCccc
Confidence 34444333 599999999999999999999999999999875
No 82
>KOG1377 consensus Uridine 5'- monophosphate synthase/orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=83.72 E-value=2.9 Score=37.90 Aligned_cols=116 Identities=19% Similarity=0.184 Sum_probs=70.0
Q ss_pred eEEechhhccCHHHHHHHHHHHHHHhcc--CCccE--EEecCCcc-hhHHHHHHHHhCCCeEEee--------ccCCCCC
Q 025851 97 MFQDITTLLLDTKAFRDTIDLFVERYKD--KNISV--VAGIEARG-FIFGPPIALAIGAKFVPMR--------KPKKLPG 163 (247)
Q Consensus 97 ~f~Di~~ll~dp~~~~~l~~~La~~~~~--~~iDv--VVgve~rG-f~lA~~LA~~Lg~p~v~iR--------K~~kl~~ 163 (247)
+|.|.+.. ..++.+..++..++..+-+ ..+|+ ++++...| ..-+..-|...+++.++-+ |..+.++
T Consensus 64 i~~df~~~-~~~k~L~aLA~a~~f~I~edrkffDigntvg~qY~gg~~kia~wadl~n~h~v~g~~i~~g~~rk~~k~~~ 142 (261)
T KOG1377|consen 64 IFFDFSLF-NSGKDLRALAQAYAFLIFEDRKFFDIGNTVGLQYKGGPLKIASWADLVNAHGVPGRGIIKGLNRKLLKDHG 142 (261)
T ss_pred eeeccccc-ccHHHHHHHHHHHHHHHHhhhhcccccceeccccccchHHHHHHHHHHhccCcccchHHHHHhhhccccCC
Confidence 56676644 4788888888888776543 46898 99999777 4555556666666555432 1111110
Q ss_pred ceeeeeeeeccccceeEEeecccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEecc
Q 025851 164 EVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELP 229 (247)
Q Consensus 164 ~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~ 229 (247)
..+.+- .+...+|++|+.||+.++|.-+.+. .+.=.-+.+.++.+..+..
T Consensus 143 -----------egG~ll---lAems~kg~L~~~dy~ea~~aI~ee--~~d~~~G~v~g~~~~ldrq 192 (261)
T KOG1377|consen 143 -----------EGGVLL---LAELSSKGSLITGDYTEAATAIAEE--DIDFVNGFVAGSIVALDRQ 192 (261)
T ss_pred -----------CCceEE---EEEeccCCceeehhHHHHHHHHHHh--hhchheeEEeeeeeeccHH
Confidence 011121 2335789999999977776666665 3333345666666665554
No 83
>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]
Probab=81.70 E-value=3.9 Score=36.16 Aligned_cols=43 Identities=23% Similarity=0.414 Sum_probs=34.6
Q ss_pred CCCCEEEEEecchhhhHHHHHHHHHHHhCCCe--EEEEEEEEecc
Q 025851 187 QAGERALIVDDLVATGGTLSAAIRLLERVGVH--VVECACVIELP 229 (247)
Q Consensus 187 ~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~--vV~v~vlv~~~ 229 (247)
+..++|||+=-++.||.|+..|+++|+++|.. .+....+.-.+
T Consensus 187 I~sR~VLLmYPi~stGnTV~~Av~VL~EhgVp~s~IiL~sLF~tP 231 (267)
T KOG1017|consen 187 ITSRRVLLMYPIISTGNTVCKAVEVLKEHGVPDSNIILVSLFITP 231 (267)
T ss_pred ccceeEEEEeeeecCCccHHHHHHHHHHcCCCcccEEEEEeeecc
Confidence 46689999999999999999999999999964 44444454443
No 84
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=80.62 E-value=26 Score=27.70 Aligned_cols=73 Identities=15% Similarity=0.170 Sum_probs=41.5
Q ss_pred cchhHHHHHHHHhCCCeEEeeccCCCCCceeeeeeeeccccceeEEeecccCCCCEEEEEecchhh--hH--HHHHHHHH
Q 025851 136 RGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT--GG--TLSAAIRL 211 (247)
Q Consensus 136 rGf~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltT--G~--Tl~aa~~l 211 (247)
..-.+|..||..||.+...+..++- ..+...++.....+|+.|+||=+.... -. -+.-+++.
T Consensus 8 ~~~~La~~ia~~L~~~~~~~~~~~F--------------~dGE~~v~i~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~a 73 (116)
T PF13793_consen 8 SSQDLAERIAEALGIPLGKVETKRF--------------PDGETYVRIPESVRGKDVFIIQSTSPPVNDNLMELLLLIDA 73 (116)
T ss_dssp SGHHHHHHHHHHTTS-EE-EEEEE---------------TTS-EEEEESS--TTSEEEEE---SSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCceeeeEEEEc--------------CCCCEEEEecccccCCceEEEEecCCchhHHHHHHHHHHHH
Confidence 3457899999999998876532211 112233333445689999999888764 22 34456677
Q ss_pred HHhCCCeEEEE
Q 025851 212 LERVGVHVVEC 222 (247)
Q Consensus 212 Lk~aGa~vV~v 222 (247)
+++.|++.+.+
T Consensus 74 ~r~~~a~~i~~ 84 (116)
T PF13793_consen 74 LRRAGAKRITL 84 (116)
T ss_dssp HHHTTBSEEEE
T ss_pred HHHcCCcEEEE
Confidence 78899876643
No 85
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=72.56 E-value=35 Score=31.84 Aligned_cols=73 Identities=11% Similarity=0.135 Sum_probs=41.5
Q ss_pred CcchhHHHHHHHHhCCCeEEeeccCCCCCceeeeeeeeccccceeEEeecccCCCCEEEEEecchhhh-H---HHHHHHH
Q 025851 135 ARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATG-G---TLSAAIR 210 (247)
Q Consensus 135 ~rGf~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltTG-~---Tl~aa~~ 210 (247)
...-.+|..+|..||++...+..++-.. +...++.....+|+.|+||=+.-... . =+.-+++
T Consensus 13 ~~~~~La~~ia~~lg~~l~~~~~~~Fpd--------------GE~~v~i~~~v~g~~V~iiqs~~~p~nd~lmeLl~~~~ 78 (319)
T PRK04923 13 NANKPLAQSICKELGVRMGKALVTRFSD--------------GEVQVEIEESVRRQEVFVIQPTCAPSAENLMELLVLID 78 (319)
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEECCC--------------CCEEEEECCCcCCCeEEEEecCCCCCchHHHHHHHHHH
Confidence 3446899999999999876543221111 22333333335788888885432211 1 2334456
Q ss_pred HHHhCCCeEEE
Q 025851 211 LLERVGVHVVE 221 (247)
Q Consensus 211 lLk~aGa~vV~ 221 (247)
.++++|++.+.
T Consensus 79 alr~~~a~~i~ 89 (319)
T PRK04923 79 ALKRASAASVT 89 (319)
T ss_pred HHHHcCCcEEE
Confidence 66788887554
No 86
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=71.22 E-value=48 Score=31.08 Aligned_cols=74 Identities=11% Similarity=0.194 Sum_probs=46.4
Q ss_pred CCcchhHHHHHHHHhCCCeEEeeccCCCCCceeeeeeeeccccceeEEeecccCCCCEEEEEecchhh-hHH---HHHHH
Q 025851 134 EARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT-GGT---LSAAI 209 (247)
Q Consensus 134 e~rGf~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltT-G~T---l~aa~ 209 (247)
-...-.+|..+|+.||++...+..++ .| .+.+.++.....+|+.|+||-..... ... +.-++
T Consensus 27 g~~~~~la~~ia~~lg~~l~~~~~~~-Fp-------------DGE~~v~i~~~vrg~~V~ivqs~~~p~nd~l~eLll~~ 92 (330)
T PRK02812 27 GSSNPALAQEVARYLGMDLGPMIRKR-FA-------------DGELYVQIQESIRGCDVYLIQPTCAPVNDHLMELLIMV 92 (330)
T ss_pred CCCCHHHHHHHHHHhCCCceeeEEEE-CC-------------CCCEEEEeCCCCCCCEEEEECCCCCCccHHHHHHHHHH
Confidence 45557899999999999876543221 11 12233333344689999999885432 222 34556
Q ss_pred HHHHhCCCeEEE
Q 025851 210 RLLERVGVHVVE 221 (247)
Q Consensus 210 ~lLk~aGa~vV~ 221 (247)
+.++++|++.+.
T Consensus 93 ~alr~~ga~ri~ 104 (330)
T PRK02812 93 DACRRASARQIT 104 (330)
T ss_pred HHHHHhCCceEE
Confidence 677889997554
No 87
>COG3535 Uncharacterized conserved protein [Function unknown]
Probab=69.21 E-value=1.1e+02 Score=29.17 Aligned_cols=111 Identities=14% Similarity=0.143 Sum_probs=65.7
Q ss_pred cCHHHHHHHHHHHHHHhccCCccEEEecCCcchh--HHHHHHHHhCCCeEEeeccCC-CCCceeeeeeeeccccceeEEe
Q 025851 106 LDTKAFRDTIDLFVERYKDKNISVVAGIEARGFI--FGPPIALAIGAKFVPMRKPKK-LPGEVISEEYSLEYGKDVMEMH 182 (247)
Q Consensus 106 ~dp~~~~~l~~~La~~~~~~~iDvVVgve~rGf~--lA~~LA~~Lg~p~v~iRK~~k-l~~~~~s~~y~~e~g~~~~~l~ 182 (247)
-+++.+....+.|-+.. ..++|.|+++|.+|++ .--..|..+|+|++..---++ .|.-....-|-.......+.+
T Consensus 76 p~g~e~~ra~e~~~~~~-~k~v~ai~s~EiGG~Ns~ip~v~aa~~g~PvVD~DgmGRAfPElqMtTf~~~g~~~tPlvi- 153 (357)
T COG3535 76 PNGDEAIRAFEVLEDYL-GKPVDAIISIEIGGINSLIPLVVAAQLGLPVVDGDGMGRAFPELQMTTFYLHGLPATPLVI- 153 (357)
T ss_pred CCcHHHHHHHHHHHHHh-CCceeEEEEeecCCcchhHHHHHHHhcCCceecCCcccccCcceEEEEEEEcCCCCCceEE-
Confidence 34555555556655544 4589999999999994 333456678999987532222 232111111100011111111
Q ss_pred ecccCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEE
Q 025851 183 VGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVEC 222 (247)
Q Consensus 183 ~~~~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v 222 (247)
...+|.++++ ..++...+-+.+....-++|+...-+
T Consensus 154 --~d~~gn~~i~--e~v~n~w~ERiAR~~tv~~GG~~~~a 189 (357)
T COG3535 154 --CDERGNRVII--ETVSNKWAERIARAATVEMGGSAAVA 189 (357)
T ss_pred --EecCCCEEEE--EeecchhHHHHHHHHHHHcCCeEEEE
Confidence 1246666666 88899999999999999999875443
No 88
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=67.25 E-value=56 Score=32.01 Aligned_cols=79 Identities=13% Similarity=0.112 Sum_probs=46.2
Q ss_pred EEEecCCcchhHHHHHHHHhCCCeEEeeccCCCCCceeeeeeeeccccceeEEeecccCCCCEEEEEecchhh-hH---H
Q 025851 129 VVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT-GG---T 204 (247)
Q Consensus 129 vVVgve~rGf~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltT-G~---T 204 (247)
.++-.-...-.+|..||..||++...+..++-..| .+.++....++|+.|+||-+.... -. =
T Consensus 120 m~I~sgs~~~~LA~~IA~~Lg~~l~~~~~~rFpDG--------------E~~Vri~e~VrG~dV~IVqS~~~pvNd~LmE 185 (439)
T PTZ00145 120 AILFSGSSNPLLSKNIADHLGTILGRVHLKRFADG--------------EVSMQFLESIRGKDVYIIQPTCPPVNENLIE 185 (439)
T ss_pred eEEEECCCCHHHHHHHHHHhCCCceeeEEEECCCC--------------CEEEEECCCcCCCeEEEEecCCCCCcHHHHH
Confidence 33333455578999999999998766532221122 223333334588888888764322 11 2
Q ss_pred HHHHHHHHHhCCCeEEE
Q 025851 205 LSAAIRLLERVGVHVVE 221 (247)
Q Consensus 205 l~aa~~lLk~aGa~vV~ 221 (247)
+.-+++.++++||+.|.
T Consensus 186 LLllidAlr~agAkrIt 202 (439)
T PTZ00145 186 LLLMISTCRRASAKKIT 202 (439)
T ss_pred HHHHHHHHHHhccCeEE
Confidence 33345666788887554
No 89
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=65.43 E-value=49 Score=30.49 Aligned_cols=68 Identities=13% Similarity=0.161 Sum_probs=41.0
Q ss_pred hHHHHHHHHhCCCeEEeeccCCCCCceeeeeeeeccccceeEEeecccCCCCEEEEEecchhh--hH--HHHHHHHHHHh
Q 025851 139 IFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT--GG--TLSAAIRLLER 214 (247)
Q Consensus 139 ~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltT--G~--Tl~aa~~lLk~ 214 (247)
.+|..+|+.||++...+..++-..| ...++.....+|+.|+||-..... -. -+.-+++.+++
T Consensus 2 ~lA~~ia~~lg~~l~~~~~~~FpdG--------------E~~v~i~~~v~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~ 67 (302)
T PLN02369 2 ALSQEIACYLGLELGKITIKRFADG--------------EIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRR 67 (302)
T ss_pred hHHHHHHHHhCCceeeeEEEECCCC--------------CEEEEECCCCCCCeEEEEecCCCCcchHHHHHHHHHHHHHH
Confidence 4788999999998865532221122 222333333578899998875421 11 23455667788
Q ss_pred CCCeEE
Q 025851 215 VGVHVV 220 (247)
Q Consensus 215 aGa~vV 220 (247)
+|++.+
T Consensus 68 ~~a~~i 73 (302)
T PLN02369 68 ASAKRI 73 (302)
T ss_pred cCCCeE
Confidence 888755
No 90
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=63.84 E-value=65 Score=29.32 Aligned_cols=72 Identities=13% Similarity=0.184 Sum_probs=43.8
Q ss_pred cchhHHHHHHHHhCCCeEEeeccCCCCCceeeeeeeeccccceeEEeecccCCCCEEEEEecchhhhH---HHHHHHHHH
Q 025851 136 RGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGG---TLSAAIRLL 212 (247)
Q Consensus 136 rGf~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltTG~---Tl~aa~~lL 212 (247)
..-.+|..||..+|++...+..++-..| ...++.....+|+.|+|+-..-.-.. -+.-+++.+
T Consensus 7 ~~~~la~~ia~~l~~~~~~~~~~~FpdG--------------E~~v~i~~~v~g~~v~i~~~~~~~~d~l~ell~~~~al 72 (285)
T PRK00934 7 ASQLLASEVARLLNTELALVETKRFPDG--------------ELYVRILGEIDGEDVVIISTTYPQDENLVELLLLIDAL 72 (285)
T ss_pred CCHHHHHHHHHHHCCceEeeEEEECCCC--------------CEEEEECCCcCCCEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 3458999999999998876543221112 22222233468999988876432222 234456677
Q ss_pred HhCCCeEEE
Q 025851 213 ERVGVHVVE 221 (247)
Q Consensus 213 k~aGa~vV~ 221 (247)
+++|++.+.
T Consensus 73 r~~ga~~i~ 81 (285)
T PRK00934 73 RDEGAKSIT 81 (285)
T ss_pred HHcCCCeEE
Confidence 889997654
No 91
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=63.16 E-value=67 Score=29.55 Aligned_cols=71 Identities=14% Similarity=0.236 Sum_probs=41.6
Q ss_pred cchhHHHHHHHHhCCCeEEeeccCCCCCceeeeeeeeccccceeEEeecccCCCCEEEEE-ecchhh-h---HHHHHHHH
Q 025851 136 RGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIV-DDLVAT-G---GTLSAAIR 210 (247)
Q Consensus 136 rGf~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIV-DDIltT-G---~Tl~aa~~ 210 (247)
..-.+|..+|+.+|.+...+..+. .| .+...++.....+|+.|+|| -..... - -=+.-+++
T Consensus 8 ~~~~la~~ia~~lg~~~~~~~~~~-Fp-------------dGE~~v~i~~~v~g~~v~iv~~s~~~~~~~~l~el~~~~~ 73 (308)
T TIGR01251 8 SNQELAQKVAKNLGLPLGDVEVKR-FP-------------DGELYVRINESVRGKDVFIIQQSTSAPVNDNLMELLIMID 73 (308)
T ss_pred CCHHHHHHHHHHhCCeeeeeEEEE-CC-------------CCCEEEEECCCCCCCeEEEEeCCCCCCccHHHHHHHHHHH
Confidence 345799999999999887653221 11 12223333333578888888 443211 1 13444566
Q ss_pred HHHhCCCeEE
Q 025851 211 LLERVGVHVV 220 (247)
Q Consensus 211 lLk~aGa~vV 220 (247)
.++++|++.+
T Consensus 74 a~r~~ga~~i 83 (308)
T TIGR01251 74 ALKRASAKSI 83 (308)
T ss_pred HHHHcCCCeE
Confidence 6778888755
No 92
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=62.00 E-value=97 Score=29.05 Aligned_cols=73 Identities=12% Similarity=0.084 Sum_probs=43.9
Q ss_pred CcchhHHHHHHHHhCCCeEEeeccCCCCCceeeeeeeeccccceeEEeecccCCCCEEEEEecchhh-hHH---HHHHHH
Q 025851 135 ARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT-GGT---LSAAIR 210 (247)
Q Consensus 135 ~rGf~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltT-G~T---l~aa~~ 210 (247)
...-.+|..+|+.||++...+..++- ..+..+++.....+|+.|+||=++... ..- +.-++.
T Consensus 16 ~~~~~La~~ia~~lg~~l~~~~~~~F--------------pdGE~~v~i~~~vrg~dV~ivqs~~~p~nd~l~eLll~~~ 81 (332)
T PRK00553 16 SKAKKLVDSICRKLSMKPGEIVIQKF--------------ADGETYIRFDESVRNKDVVIFQSTCSPVNDSLMELLIAID 81 (332)
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEEC--------------CCCCEEEEECCCCCCCEEEEEcCCCCCCchHHHHHHHHHH
Confidence 44468999999999998865432221 112233333344588999988775432 112 334556
Q ss_pred HHHhCCCeEEE
Q 025851 211 LLERVGVHVVE 221 (247)
Q Consensus 211 lLk~aGa~vV~ 221 (247)
.++++||+.+.
T Consensus 82 alr~~~a~~i~ 92 (332)
T PRK00553 82 ALKRGSAKSIT 92 (332)
T ss_pred HHHHcCCCeEE
Confidence 66788887554
No 93
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=61.86 E-value=97 Score=28.81 Aligned_cols=73 Identities=10% Similarity=0.144 Sum_probs=44.8
Q ss_pred CcchhHHHHHHHHhCCCeEEeeccCCCCCceeeeeeeeccccceeEEeecccCCCCEEEEEecchhh----hHHHHHHHH
Q 025851 135 ARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT----GGTLSAAIR 210 (247)
Q Consensus 135 ~rGf~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltT----G~Tl~aa~~ 210 (247)
...-.+|..+|..||++...+..++- ..+...++.....+|+.|+||-..-.. =--+.-+++
T Consensus 12 ~~~~~la~~ia~~lg~~l~~~~~~~F--------------pdGE~~v~i~~~vrg~dV~iv~s~~~~~nd~lmelll~~~ 77 (320)
T PRK02269 12 SSNKELAEKVAQEIGIELGKSSVRQF--------------SDGEIQVNIEESIRGHHVFILQSTSSPVNDNLMEILIMVD 77 (320)
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEEC--------------CCCCEEEEECCCCCCCEEEEEecCCCCccchHHHHHHHHH
Confidence 34458999999999998765432221 112233333344689999998764321 122455667
Q ss_pred HHHhCCCeEEE
Q 025851 211 LLERVGVHVVE 221 (247)
Q Consensus 211 lLk~aGa~vV~ 221 (247)
.++++|++.+.
T Consensus 78 alr~~~a~~i~ 88 (320)
T PRK02269 78 ALKRASAESIN 88 (320)
T ss_pred HHHHhCCCeEE
Confidence 77899997663
No 94
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=60.92 E-value=62 Score=29.92 Aligned_cols=73 Identities=14% Similarity=0.179 Sum_probs=44.2
Q ss_pred CcchhHHHHHHHHhCCCeEEeeccCCCCCceeeeeeeeccccceeEEeecccCCCCEEEEEecchhh-hH---HHHHHHH
Q 025851 135 ARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT-GG---TLSAAIR 210 (247)
Q Consensus 135 ~rGf~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltT-G~---Tl~aa~~ 210 (247)
...-.+|..+|..||.+...+..++ .| .+...++.....+|+.|+||=+.... .. -+.-+++
T Consensus 7 ~~~~~la~~ia~~lg~~~~~~~~~~-Fp-------------dGE~~vri~~~v~g~~V~ii~s~~~~~nd~l~eLll~~~ 72 (309)
T PRK01259 7 NANPELAEKIAKYLGIPLGKASVGR-FS-------------DGEISVEINENVRGKDVFIIQSTCAPTNDNLMELLIMID 72 (309)
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEE-CC-------------CCCEEEEeCCCCCCCEEEEECCCCCCCcHHHHHHHHHHH
Confidence 3446899999999999886543221 11 12233333334589999999654222 11 2445667
Q ss_pred HHHhCCCeEEE
Q 025851 211 LLERVGVHVVE 221 (247)
Q Consensus 211 lLk~aGa~vV~ 221 (247)
.++++|++.+.
T Consensus 73 alr~~ga~~i~ 83 (309)
T PRK01259 73 ALKRASAGRIT 83 (309)
T ss_pred HHHHcCCceEE
Confidence 77899997544
No 95
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=60.70 E-value=96 Score=28.58 Aligned_cols=74 Identities=15% Similarity=0.095 Sum_probs=45.3
Q ss_pred CcchhHHHHHHHHhCCCeEEeeccCCCCCceeeeeeeeccccceeEEeecccCCCCEEEEEecchhhhH---HHHHHHHH
Q 025851 135 ARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGG---TLSAAIRL 211 (247)
Q Consensus 135 ~rGf~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltTG~---Tl~aa~~l 211 (247)
.+.-.+|..+|..||++...+...+- ..+...++.....+|+.|+||-....--. -+.-+++.
T Consensus 9 ~~~~~la~~ia~~lg~~~~~~~~~~F--------------~dGE~~v~i~~~v~g~~V~ivqs~~~~n~~l~elll~~~a 74 (301)
T PRK07199 9 PGNEAAAGRLAAALGVEVGRIELHRF--------------PDGESYVRLDSPVAGRTVVLVCSLDRPDEKLLPLLFAAEA 74 (301)
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEEC--------------CCCCEEEEECCCCCCCEEEEECCCCCCcHHHHHHHHHHHH
Confidence 34468999999999998865432211 11222333333468999999988543222 23445566
Q ss_pred HHhCCCeEEEE
Q 025851 212 LERVGVHVVEC 222 (247)
Q Consensus 212 Lk~aGa~vV~v 222 (247)
++++|++.+.+
T Consensus 75 lr~~~a~~i~~ 85 (301)
T PRK07199 75 ARELGARRVGL 85 (301)
T ss_pred HHHcCCCeEEE
Confidence 78999976543
No 96
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=57.89 E-value=68 Score=29.60 Aligned_cols=68 Identities=13% Similarity=0.167 Sum_probs=41.6
Q ss_pred HHHHHHHHhCCCeEEeeccCCCCCceeeeeeeeccccceeEEeecccCCCCEEEEEecchhh-hHH---HHHHHHHHHhC
Q 025851 140 FGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT-GGT---LSAAIRLLERV 215 (247)
Q Consensus 140 lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltT-G~T---l~aa~~lLk~a 215 (247)
+|..+|+.+|++...+..++- ..+.+.++....++|+.|+||--.... ... +.-+++.++++
T Consensus 1 la~~ia~~l~~~l~~~~~~~F--------------~DGE~~vri~~~v~g~~v~ii~s~~~p~nd~l~ell~~~~a~r~~ 66 (304)
T PRK03092 1 LAEEVAKELGVEVTPTTAYDF--------------ANGEIYVRFEESVRGCDAFVLQSHTAPINKWLMEQLIMIDALKRA 66 (304)
T ss_pred CHHHHHHHhCCceeeeEEEEC--------------CCCCEEEEECCCCCCCEEEEEeCCCCCCcHHHHHHHHHHHHHHHc
Confidence 578899999998765432221 112233333344689999998764432 222 34566777899
Q ss_pred CCeEEE
Q 025851 216 GVHVVE 221 (247)
Q Consensus 216 Ga~vV~ 221 (247)
|++.+.
T Consensus 67 ~a~~i~ 72 (304)
T PRK03092 67 SAKRIT 72 (304)
T ss_pred CCCeEE
Confidence 997654
No 97
>PRK12342 hypothetical protein; Provisional
Probab=57.78 E-value=33 Score=31.00 Aligned_cols=39 Identities=5% Similarity=-0.044 Sum_probs=26.2
Q ss_pred HHHHHHhccCCccEEEecC----CcchhHHHHHHHHhCCCeEE
Q 025851 116 DLFVERYKDKNISVVAGIE----ARGFIFGPPIALAIGAKFVP 154 (247)
Q Consensus 116 ~~La~~~~~~~iDvVVgve----~rGf~lA~~LA~~Lg~p~v~ 154 (247)
..|+..++..++|+|++=. ...--.+..+|..||.|++.
T Consensus 99 ~~La~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt 141 (254)
T PRK12342 99 KALAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVIN 141 (254)
T ss_pred HHHHHHHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEe
Confidence 3444444444689888743 33336788999999999875
No 98
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=55.20 E-value=86 Score=25.69 Aligned_cols=85 Identities=20% Similarity=0.327 Sum_probs=47.8
Q ss_pred EecCCcch-hHHHHHHHHhCCCeEEeecc-CCCCCceeeeeeeeccccceeEEeecccCCCCEEEEEecch-hhhHHHHH
Q 025851 131 AGIEARGF-IFGPPIALAIGAKFVPMRKP-KKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLV-ATGGTLSA 207 (247)
Q Consensus 131 Vgve~rGf-~lA~~LA~~Lg~p~v~iRK~-~kl~~~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIl-tTG~Tl~a 207 (247)
-+++.-|= .++..+|..+|..|.-++-. .-+|.+..-..+ ....++.++++++.+. .+|+++|.|= ++=+|-.+
T Consensus 5 eg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v-~~~~~~~f~~~~GPif--~~ill~DEiNrappktQsA 81 (131)
T PF07726_consen 5 EGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPV-YDQETGEFEFRPGPIF--TNILLADEINRAPPKTQSA 81 (131)
T ss_dssp ES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEE-EETTTTEEEEEE-TT---SSEEEEETGGGS-HHHHHH
T ss_pred ECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeee-eccCCCeeEeecChhh--hceeeecccccCCHHHHHH
Confidence 34444343 67889999999888655432 122333222221 1223467888877664 4699999996 46688889
Q ss_pred HHHHHHhCCCe
Q 025851 208 AIRLLERVGVH 218 (247)
Q Consensus 208 a~~lLk~aGa~ 218 (247)
+.+++++.-..
T Consensus 82 lLeam~Er~Vt 92 (131)
T PF07726_consen 82 LLEAMEERQVT 92 (131)
T ss_dssp HHHHHHHSEEE
T ss_pred HHHHHHcCeEE
Confidence 99999886443
No 99
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=52.86 E-value=1.4e+02 Score=26.68 Aligned_cols=139 Identities=12% Similarity=0.185 Sum_probs=60.5
Q ss_pred ChHHHHHhcccccCCCCCCCCceEEechhhccCHHHHHHHHHHHHHHhccCCccEEEecCCcchhHHHHHHHHh-C-CCe
Q 025851 75 DPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAI-G-AKF 152 (247)
Q Consensus 75 ~~~~~~l~~~ir~~p~fp~~gi~f~Di~~ll~dp~~~~~l~~~La~~~~~~~iDvVVgve~rGf~lA~~LA~~L-g-~p~ 152 (247)
++..+.+++.++... +....+. ++..+--.|++.+..+. +.+...++|+|+++.+.. +..++..+ + +|+
T Consensus 14 ~~~~~gf~~~L~~~g-~~~~~~~-~~~~~a~~d~~~~~~~~----~~l~~~~~DlIi~~gt~a---a~~~~~~~~~~iPV 84 (294)
T PF04392_consen 14 DDIVRGFKDGLKELG-YDEKNVE-IEYKNAEGDPEKLRQIA----RKLKAQKPDLIIAIGTPA---AQALAKHLKDDIPV 84 (294)
T ss_dssp HHHHHHHHHHHHHTT---CCCEE-EEEEE-TT-HHHHHHHH----HHHCCTS-SEEEEESHHH---HHHHHHH-SS-S-E
T ss_pred HHHHHHHHHHHHHcC-CccccEE-EEEecCCCCHHHHHHHH----HHHhcCCCCEEEEeCcHH---HHHHHHhcCCCcEE
Confidence 334444555555432 2222332 34445556776655544 445667899999986533 33444444 4 788
Q ss_pred EEeeccC----C------CCCceeeeeeeeccccceeEEeecccCCCCEE-EEEecchhh-hHHHHHHHHHHHhCCCeEE
Q 025851 153 VPMRKPK----K------LPGEVISEEYSLEYGKDVMEMHVGAVQAGERA-LIVDDLVAT-GGTLSAAIRLLERVGVHVV 220 (247)
Q Consensus 153 v~iRK~~----k------l~~~~~s~~y~~e~g~~~~~l~~~~~~~GkrV-LIVDDIltT-G~Tl~aa~~lLk~aGa~vV 220 (247)
++.--.. . .++.-++..+....-...+++-+.....-++| +|.|+=-++ ......+.+..++.|.+++
T Consensus 85 Vf~~V~dp~~~~l~~~~~~~~~nvTGv~~~~~~~~~l~l~~~l~P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~l~ 164 (294)
T PF04392_consen 85 VFCGVSDPVGAGLVDSLDRPGKNVTGVSERPPIEKQLELIKKLFPDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIELV 164 (294)
T ss_dssp EEECES-TTTTTS-S-SSS--SSEEEEEE---HHHHHHHHHHHSTT--EEEEEEETT-HHHHHHHHHHHHHHHHTT-EEE
T ss_pred EEEeccChhhhhccccccCCCCCEEEEECCcCHHHHHHHHHHhCCCCCEEEEEecCCCccHHHHHHHHHHHHHHcCCEEE
Confidence 7653210 0 01111111110000011111111122345888 667766553 4566777777788898766
Q ss_pred EE
Q 025851 221 EC 222 (247)
Q Consensus 221 ~v 222 (247)
..
T Consensus 165 ~~ 166 (294)
T PF04392_consen 165 EI 166 (294)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 100
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=49.94 E-value=2.1e+02 Score=26.60 Aligned_cols=73 Identities=15% Similarity=0.190 Sum_probs=41.9
Q ss_pred CcchhHHHHHHHHhCCCeEEeeccCCCCCceeeeeeeeccccceeEEeecccCCCCEEEEEecchhh-hHH---HHHHHH
Q 025851 135 ARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT-GGT---LSAAIR 210 (247)
Q Consensus 135 ~rGf~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltT-G~T---l~aa~~ 210 (247)
...-.+|..+|+.+|++...+..++-..| ...++.....+|+.|+||-..-.. -.. +.-+++
T Consensus 16 ~~~~~la~~ia~~lg~~l~~~~~~~FpdG--------------E~~v~i~~~v~g~dV~ii~s~~~~~nd~l~eLll~~~ 81 (323)
T PRK02458 16 NSNLEIAEKIAQAAGVPLGKLSSRQFSDG--------------EIMINIEESVRGDDIYIIQSTSFPVNDHLWELLIMID 81 (323)
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEECCCC--------------CEEEEecCCcCCCeEEEEecCCCCCchHHHHHHHHHH
Confidence 44568999999999998865432211112 223333333578888888654221 122 233445
Q ss_pred HHHhCCCeEEE
Q 025851 211 LLERVGVHVVE 221 (247)
Q Consensus 211 lLk~aGa~vV~ 221 (247)
.++++|++.+.
T Consensus 82 alr~~~a~~i~ 92 (323)
T PRK02458 82 ACKRASANTVN 92 (323)
T ss_pred HHHHcCCceEE
Confidence 56788886543
No 101
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=49.30 E-value=65 Score=29.15 Aligned_cols=46 Identities=2% Similarity=-0.054 Sum_probs=29.7
Q ss_pred cCHHHHHHHHHHHHHHhccCCccEEEecC----CcchhHHHHHHHHhCCCeEE
Q 025851 106 LDTKAFRDTIDLFVERYKDKNISVVAGIE----ARGFIFGPPIALAIGAKFVP 154 (247)
Q Consensus 106 ~dp~~~~~l~~~La~~~~~~~iDvVVgve----~rGf~lA~~LA~~Lg~p~v~ 154 (247)
.|+.... ..|+..++..++|+|++=. ...-..+..+|..||.|++.
T Consensus 95 ~D~~~tA---~~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt 144 (256)
T PRK03359 95 ALPQQTA---SALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAIN 144 (256)
T ss_pred cCHHHHH---HHHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCcee
Confidence 3554433 4444444444699888743 33346788999999999874
No 102
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=49.19 E-value=79 Score=29.64 Aligned_cols=73 Identities=12% Similarity=0.146 Sum_probs=45.5
Q ss_pred cchhHHHHHHHHhCCCeEEeeccCCCCCceeeeeeeeccccceeEEeecccCCCCEEEEEecchhhhH-H---HHHHHHH
Q 025851 136 RGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGG-T---LSAAIRL 211 (247)
Q Consensus 136 rGf~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltTG~-T---l~aa~~l 211 (247)
..-.+|..+|+.||+|...+..++- ..+.+.++...-++|+.|.|+...-.... . +.-.++.
T Consensus 12 s~~~La~~ia~~l~~~l~~~~~~rF--------------~DGE~~V~i~EsVrg~dVfI~qs~~~pvnd~lmELLi~idA 77 (314)
T COG0462 12 SNPELAEKIAKRLGIPLGKVEVKRF--------------PDGEIYVRIEESVRGKDVFIIQSTSPPVNDNLMELLIMIDA 77 (314)
T ss_pred CCHHHHHHHHHHhCCCcccceeEEc--------------CCCcEEEEecccccCCeEEEEeCCCCCcCHHHHHHHHHHHH
Confidence 3347899999999998876532221 12233344445578999997765554222 2 3345667
Q ss_pred HHhCCCeEEEE
Q 025851 212 LERVGVHVVEC 222 (247)
Q Consensus 212 Lk~aGa~vV~v 222 (247)
++++||+.+.+
T Consensus 78 ~k~asA~~It~ 88 (314)
T COG0462 78 LKRASAKRITA 88 (314)
T ss_pred HHhcCCceEEE
Confidence 78889987664
No 103
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=48.32 E-value=46 Score=30.80 Aligned_cols=44 Identities=20% Similarity=0.160 Sum_probs=39.6
Q ss_pred cCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEecc
Q 025851 186 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELP 229 (247)
Q Consensus 186 ~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~ 229 (247)
...|++|+||--=-+......++.++|+++|+.+.+...+-+..
T Consensus 80 ~L~g~~V~vV~~p~a~~~~~~~v~~~L~~AGA~v~g~i~lt~~~ 123 (308)
T PF11382_consen 80 RLTGRSVAVVTLPGADDEDVDAVRELLEQAGATVTGRITLTDKF 123 (308)
T ss_pred ccCCCEEEEEEcCCCChHHHHHHHHHHHHCCCeEEEEEEEchhh
Confidence 36899999999777788999999999999999999999988765
No 104
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=45.89 E-value=2.5e+02 Score=26.30 Aligned_cols=75 Identities=11% Similarity=0.031 Sum_probs=43.3
Q ss_pred CcchhHHHHHHHHh-CCCeEEeeccCCCCCceeeeeeeeccccceeEEeecccCCCCEEEEEecchhhhHHH---HHHHH
Q 025851 135 ARGFIFGPPIALAI-GAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTL---SAAIR 210 (247)
Q Consensus 135 ~rGf~lA~~LA~~L-g~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDDIltTG~Tl---~aa~~ 210 (247)
...-.+|..+|..+ |+++..+..++-.. |+-.+.++....++|+.|+||=-.... .-+ .-+++
T Consensus 23 ~~~~~LA~~ia~~l~g~~l~~~~~~~FpD------------GE~~v~v~~~~~vrg~~V~ivqs~~~p-d~lmELLl~~d 89 (326)
T PLN02297 23 EETEELARKIAAESDAIELGSINWRKFPD------------GFPNLFINNAHGIRGQHVAFLASFSSP-AVIFEQLSVIY 89 (326)
T ss_pred CCCHHHHHHHHHHhCCCceeeeEEEECCC------------CCEEEEEcCCCCcCCCeEEEECCCCCC-hHHHHHHHHHH
Confidence 44568999999986 78886653322111 211233332334689999988653322 222 23445
Q ss_pred HHHhCCCeEEEE
Q 025851 211 LLERVGVHVVEC 222 (247)
Q Consensus 211 lLk~aGa~vV~v 222 (247)
.++++|++.+.+
T Consensus 90 Alr~~ga~~i~~ 101 (326)
T PLN02297 90 ALPKLFVASFTL 101 (326)
T ss_pred HHHHcCCCEEEE
Confidence 567889976543
No 105
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=45.51 E-value=2.6e+02 Score=26.72 Aligned_cols=191 Identities=18% Similarity=0.150 Sum_probs=89.9
Q ss_pred cccccCCccccCCCCcccccccccccCCCCCCcccccCCCCCCccccccccccCCChHHHHHhcccccCCCCCCCCceEE
Q 025851 20 QTQTRLSPWIAAPSSVRLPLNRSQNYRIALPPLHSTVSGDSTQPQQMASADVKAQDPRIAGISSAIRVIPDFPKPGIMFQ 99 (247)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ir~~p~fp~~gi~f~ 99 (247)
.-|-.+++..+.. -.||.....|--+..+.|.-+.+....--+..++.|- -..++.+.+.-..-.||-+||-+|-
T Consensus 55 lic~~l~~~~~~~--L~Lp~m~~~~~~~~~~~ftvsvda~~g~~TGISa~DR---a~Tir~la~~~~~~~df~~PGHvfp 129 (369)
T PRK12485 55 LICLTLTDEHCQR--LGLEQMVPSNGSVFSTAFTVSIEAATGVTTGISAADR---ARTVAAAVAPNARPEDLVQPGHIFP 129 (369)
T ss_pred eEEEeCCHHHHhh--CCCCcccccCCCCCCCCEEEEEecCCCCCCCcCHHHH---HHHHHHHhCCCCCHHHcCCCCeeCe
Confidence 4555555443322 3344433333333334455555543233345555543 2224445554444347999996543
Q ss_pred ech---hhccCHHHHHHHHHHHHHHhccCCcc-EEEecC-Ccc----hhHHHHHHHHhCCCeEEe------eccC-C---
Q 025851 100 DIT---TLLLDTKAFRDTIDLFVERYKDKNIS-VVAGIE-ARG----FIFGPPIALAIGAKFVPM------RKPK-K--- 160 (247)
Q Consensus 100 Di~---~ll~dp~~~~~l~~~La~~~~~~~iD-vVVgve-~rG----f~lA~~LA~~Lg~p~v~i------RK~~-k--- 160 (247)
=+. .++..+.-.+ ++-.|++ +....+- +|+-+. ..| ..-+..+|+..++|++.+ |+.. +
T Consensus 130 l~a~~ggvl~R~GhtE-aavdL~~-lAgl~p~avi~ei~~~dg~m~~~~~~~~fA~~h~l~~i~i~~li~yr~~~e~~V~ 207 (369)
T PRK12485 130 LRAREGGVLTRAGHTE-AGCDLAR-LAGFSPASVIVEVMNDDGTMARRPDLEVFAAKHGIKIGTIADLIHYRLSTEHTIK 207 (369)
T ss_pred EEecCCCCCCCCChHH-HHHHHHH-HcCCCceEEEEEEecCCCCccChHHHHHHHHHcCCcEEEHHHHHHHHHhccccce
Confidence 332 2333332222 3333343 2222232 333332 223 355678899999998653 1111 1
Q ss_pred ------CC---Cceeeeeeeecc-ccceeEEeecccCCCCEEEE-------Eecchhh------hHHHHHHHHHHHhCCC
Q 025851 161 ------LP---GEVISEEYSLEY-GKDVMEMHVGAVQAGERALI-------VDDLVAT------GGTLSAAIRLLERVGV 217 (247)
Q Consensus 161 ------l~---~~~~s~~y~~e~-g~~~~~l~~~~~~~GkrVLI-------VDDIltT------G~Tl~aa~~lLk~aGa 217 (247)
+| |.+....|+... +...+-+.++.+..++.|++ .-|++.+ |..+..+++.+.+.|.
T Consensus 208 ~v~~~~lpT~~G~f~~~~y~~~~~g~eHvALv~G~~~~~~~vlVRvHSecltgDv~gS~~c~d~g~qL~~Al~~I~~eG~ 287 (369)
T PRK12485 208 RIGERELPTVHGTFRLVTYEDRIEGGVHMAMVMGDIRREQPTLVRVHVIDPLRDLVGAEYAGPANWTLWAALQKVAEEGH 287 (369)
T ss_pred eEEEEEeecCCCCEEEEEEEeCCCCeEEEEEEeCCCCCCCCceEEEecccchhhhhcCCCCCccHHHHHHHHHHHHHhCC
Confidence 11 111112232221 12234444554444555553 4677654 5579999999999884
No 106
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=44.54 E-value=2.8e+02 Score=26.14 Aligned_cols=106 Identities=20% Similarity=0.220 Sum_probs=59.5
Q ss_pred hccCHHHHHHHHHHHHHHhccCCccEEEecCCcch-hHHHHHHHHhCCCeEEeeccCCC-CCceee-eeeeeccccceeE
Q 025851 104 LLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGF-IFGPPIALAIGAKFVPMRKPKKL-PGEVIS-EEYSLEYGKDVME 180 (247)
Q Consensus 104 ll~dp~~~~~l~~~La~~~~~~~iDvVVgve~rGf-~lA~~LA~~Lg~p~v~iRK~~kl-~~~~~s-~~y~~e~g~~~~~ 180 (247)
...+++..+.+...|.. .+.=++.|++.-|= .++..+|..+|.|++-+.-.... +.+.+. ..+..+.+....+
T Consensus 47 y~f~~~~~~~vl~~l~~----~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~ 122 (327)
T TIGR01650 47 YLFDKATTKAICAGFAY----DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITE 122 (327)
T ss_pred ccCCHHHHHHHHHHHhc----CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeE
Confidence 55777777665554432 23457888886664 79999999999999865422221 111111 1111222333345
Q ss_pred Eeeccc---CCCCEEEEEecchhhh-HHHHHHHHHHH
Q 025851 181 MHVGAV---QAGERALIVDDLVATG-GTLSAAIRLLE 213 (247)
Q Consensus 181 l~~~~~---~~GkrVLIVDDIltTG-~Tl~aa~~lLk 213 (247)
++.+.+ .....+|++|.+=..- .|+...-.+|+
T Consensus 123 f~~GpL~~A~~~g~illlDEin~a~p~~~~~L~~lLE 159 (327)
T TIGR01650 123 FRDGILPWALQHNVALCFDEYDAGRPDVMFVIQRVLE 159 (327)
T ss_pred EecCcchhHHhCCeEEEechhhccCHHHHHHHHHHhc
Confidence 554443 1334679999886544 45555455554
No 107
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=44.53 E-value=51 Score=22.93 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=27.0
Q ss_pred cCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEE
Q 025851 186 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVE 221 (247)
Q Consensus 186 ~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~ 221 (247)
..+++.|+++++- |.....+...|++.|...+.
T Consensus 47 ~~~~~~vv~~c~~---~~~a~~~~~~l~~~G~~~v~ 79 (89)
T cd00158 47 LDKDKPIVVYCRS---GNRSARAAKLLRKAGGTNVY 79 (89)
T ss_pred cCCCCeEEEEeCC---CchHHHHHHHHHHhCcccEE
Confidence 3578899999987 88889999999999966544
No 108
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=43.35 E-value=45 Score=23.46 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=26.9
Q ss_pred cCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEE
Q 025851 186 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVV 220 (247)
Q Consensus 186 ~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV 220 (247)
..++++|++++ .+|.....+...|++.|-+.+
T Consensus 53 ~~~~~~iv~~c---~~g~~a~~~~~~l~~~G~~~v 84 (100)
T smart00450 53 LDKDKPVVVYC---RSGNRSAKAAWLLRELGFKNV 84 (100)
T ss_pred CCCCCeEEEEe---CCCcHHHHHHHHHHHcCCCce
Confidence 45788999998 578888999999999998763
No 109
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=42.68 E-value=30 Score=29.42 Aligned_cols=47 Identities=36% Similarity=0.454 Sum_probs=27.2
Q ss_pred CCCEEEEEecchhhhHHHHHHH-HHHHhCCCeEEEEEEEEeccCccccccc
Q 025851 188 AGERALIVDDLVATGGTLSAAI-RLLERVGVHVVECACVIELPELKGRERL 237 (247)
Q Consensus 188 ~GkrVLIVDDIltTG~Tl~aa~-~lLk~aGa~vV~v~vlv~~~~~~grekL 237 (247)
.|- =+||||++.++.-+.... ++|. |..+..+.+.+.......||+-
T Consensus 82 aG~-~VIvD~v~~~~~~l~d~l~~~L~--~~~vl~VgV~Cpleil~~RE~~ 129 (174)
T PF07931_consen 82 AGN-NVIVDDVFLGPRWLQDCLRRLLA--GLPVLFVGVRCPLEILERRERA 129 (174)
T ss_dssp TT--EEEEEE--TTTHHHHHHHHHHHT--TS-EEEEEEE--HHHHHHHHHH
T ss_pred CCC-CEEEecCccCcHHHHHHHHHHhC--CCceEEEEEECCHHHHHHHHHh
Confidence 454 467899999998766665 6664 5566666666666555566554
No 110
>PRK04195 replication factor C large subunit; Provisional
Probab=41.56 E-value=1.5e+02 Score=28.90 Aligned_cols=114 Identities=14% Similarity=0.256 Sum_probs=65.4
Q ss_pred echhhccCHHHHHHHHHHHHHHhcc--CCccEEEecCCcch-hHHHHHHHHhCCCeEEeeccCCCCCceeeeeeeecccc
Q 025851 100 DITTLLLDTKAFRDTIDLFVERYKD--KNISVVAGIEARGF-IFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGK 176 (247)
Q Consensus 100 Di~~ll~dp~~~~~l~~~La~~~~~--~~iDvVVgve~rGf-~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~e~g~ 176 (247)
.+..+..+.+..+.+..++.....+ ...-++.|++..|= .+|..+|..++.+++.+--........+. ....
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~-----~~i~ 86 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIE-----RVAG 86 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHH-----HHHH
Confidence 5567888888888887777654432 23457788887775 68899999998877654211000000000 0000
Q ss_pred ceeEEeecccC-CCCEEEEEecc--hhh---hHHHHHHHHHHHhCCCeEE
Q 025851 177 DVMEMHVGAVQ-AGERALIVDDL--VAT---GGTLSAAIRLLERVGVHVV 220 (247)
Q Consensus 177 ~~~~l~~~~~~-~GkrVLIVDDI--ltT---G~Tl~aa~~lLk~aGa~vV 220 (247)
.... ...+. .+++||||||+ ++. -+.+.+..++++..+..++
T Consensus 87 ~~~~--~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iI 134 (482)
T PRK04195 87 EAAT--SGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPII 134 (482)
T ss_pred Hhhc--cCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEE
Confidence 0000 01112 35889999987 432 1457888888887655443
No 111
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=41.36 E-value=27 Score=35.99 Aligned_cols=61 Identities=25% Similarity=0.485 Sum_probs=37.0
Q ss_pred CCCCCceEEechhhccCHHHHHHHHHHHHHHhccCCc-----------cEEEecCCcch-hHHHHHHHHhCCCeEEe
Q 025851 91 FPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNI-----------SVVAGIEARGF-IFGPPIALAIGAKFVPM 155 (247)
Q Consensus 91 fp~~gi~f~Di~~ll~dp~~~~~l~~~La~~~~~~~i-----------DvVVgve~rGf-~lA~~LA~~Lg~p~v~i 155 (247)
||.+.+-|.|+..+ -..+..+.+.+.. +...++ -++-|+|..|= .+|.++|.++|+||.-+
T Consensus 182 ~~~snv~f~diGG~---d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~i 254 (802)
T KOG0733|consen 182 FPESNVSFSDIGGL---DKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSI 254 (802)
T ss_pred CCCCCcchhhccCh---HHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEee
Confidence 56656666676544 3445555554443 332211 14555555553 79999999999999865
No 112
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=41.10 E-value=51 Score=29.59 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=29.3
Q ss_pred hccCCccEEEecCCcc--hhHHHHHHHHhCCCeEEeeccC
Q 025851 122 YKDKNISVVAGIEARG--FIFGPPIALAIGAKFVPMRKPK 159 (247)
Q Consensus 122 ~~~~~iDvVVgve~rG--f~lA~~LA~~Lg~p~v~iRK~~ 159 (247)
+++.++|++|+=++|| +.-=-..|+.+|+|+++++++.
T Consensus 186 ~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~ 225 (248)
T PRK08057 186 LRQHRIDVVVTKNSGGAGTEAKLEAARELGIPVVMIARPA 225 (248)
T ss_pred HHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCC
Confidence 3445799999999988 5444477889999999987653
No 113
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=40.92 E-value=58 Score=26.82 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHHHhccCCccEEEecC-CcchhHHHHHHHHhCCCeEE
Q 025851 107 DTKAFRDTIDLFVERYKDKNISVVAGIE-ARGFIFGPPIALAIGAKFVP 154 (247)
Q Consensus 107 dp~~~~~l~~~La~~~~~~~iDvVVgve-~rGf~lA~~LA~~Lg~p~v~ 154 (247)
+++.+..+. ++.+++.++++|+... ..|--++..||.+||.+++.
T Consensus 67 ~~~~~a~al---~~~i~~~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vt 112 (168)
T cd01715 67 LAEPYAPAL---VALAKKEKPSHILAGATSFGKDLAPRVAAKLDVGLIS 112 (168)
T ss_pred ChHHHHHHH---HHHHHhcCCCEEEECCCccccchHHHHHHHhCCCcee
Confidence 455544444 4444444678777665 67889999999999998863
No 114
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=40.91 E-value=49 Score=24.18 Aligned_cols=31 Identities=19% Similarity=0.061 Sum_probs=24.7
Q ss_pred CCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEE
Q 025851 187 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVV 220 (247)
Q Consensus 187 ~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV 220 (247)
.++++|+++++ +|.....++..|++.|-+.+
T Consensus 54 ~~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v 84 (96)
T cd01529 54 GRATRYVLTCD---GSLLARFAAQELLALGGKPV 84 (96)
T ss_pred CCCCCEEEEeC---ChHHHHHHHHHHHHcCCCCE
Confidence 46788999986 67777888888899998644
No 115
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=40.79 E-value=46 Score=23.99 Aligned_cols=32 Identities=13% Similarity=0.176 Sum_probs=27.4
Q ss_pred cCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEE
Q 025851 186 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVV 220 (247)
Q Consensus 186 ~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV 220 (247)
+.+++.|+++++ +|.+...+...|++.|...+
T Consensus 53 ~~~~~~ivv~c~---~g~~s~~a~~~l~~~G~~~v 84 (96)
T cd01444 53 LDRDRPVVVYCY---HGNSSAQLAQALREAGFTDV 84 (96)
T ss_pred cCCCCCEEEEeC---CCChHHHHHHHHHHcCCceE
Confidence 457889999988 89999999999999997654
No 116
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=38.65 E-value=1.9e+02 Score=30.85 Aligned_cols=34 Identities=18% Similarity=0.131 Sum_probs=25.2
Q ss_pred cCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEE
Q 025851 186 VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVEC 222 (247)
Q Consensus 186 ~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v 222 (247)
...|.+||||||--..- ..+..+|++.|+.++.+
T Consensus 686 ~l~g~~vLlvdD~~~~r---~~l~~~L~~~G~~v~~a 719 (894)
T PRK10618 686 LLDGVTVLLDITSEEVR---KIVTRQLENWGATCITP 719 (894)
T ss_pred cCCCCEEEEEeCCHHHH---HHHHHHHHHCCCEEEEc
Confidence 35789999999987653 34456789999987653
No 117
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=37.71 E-value=59 Score=27.97 Aligned_cols=45 Identities=18% Similarity=0.164 Sum_probs=31.9
Q ss_pred cCHHHHHHHHHHHHHHhccCCccEEEecCCc----chhHHHHHHHHhCCCeE
Q 025851 106 LDTKAFRDTIDLFVERYKDKNISVVAGIEAR----GFIFGPPIALAIGAKFV 153 (247)
Q Consensus 106 ~dp~~~~~l~~~La~~~~~~~iDvVVgve~r----Gf~lA~~LA~~Lg~p~v 153 (247)
.+++.+..+...+. +..++|+|+...+. |-.++..+|.+||.+++
T Consensus 91 ~~~e~~a~al~~~i---~~~~p~lVL~~~t~~~~~grdlaprlAarLga~lv 139 (202)
T cd01714 91 ADTLATAKALAAAI---KKIGVDLILTGKQSIDGDTGQVGPLLAELLGWPQI 139 (202)
T ss_pred CChHHHHHHHHHHH---HHhCCCEEEEcCCcccCCcCcHHHHHHHHhCCCcc
Confidence 45665554444443 33458888887654 88999999999999875
No 118
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=36.12 E-value=64 Score=25.65 Aligned_cols=37 Identities=22% Similarity=0.472 Sum_probs=30.5
Q ss_pred CCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEeccC
Q 025851 187 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPE 230 (247)
Q Consensus 187 ~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~~ 230 (247)
.+|++|+|| -+|++..+++..|.+.|++.+. ++++..
T Consensus 10 l~~~~vlvi----GaGg~ar~v~~~L~~~g~~~i~---i~nRt~ 46 (135)
T PF01488_consen 10 LKGKRVLVI----GAGGAARAVAAALAALGAKEIT---IVNRTP 46 (135)
T ss_dssp GTTSEEEEE----SSSHHHHHHHHHHHHTTSSEEE---EEESSH
T ss_pred cCCCEEEEE----CCHHHHHHHHHHHHHcCCCEEE---EEECCH
Confidence 579999985 6899999999999999999765 455653
No 119
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=35.76 E-value=90 Score=23.20 Aligned_cols=26 Identities=42% Similarity=0.547 Sum_probs=17.8
Q ss_pred CCCEEEEEecchhhhHHHHHHHHHHHhCC
Q 025851 188 AGERALIVDDLVATGGTLSAAIRLLERVG 216 (247)
Q Consensus 188 ~GkrVLIVDDIltTG~Tl~aa~~lLk~aG 216 (247)
.+.+||+||| .-.......+.|+..|
T Consensus 4 ~~~~vLivdD---~~~~~~~~~~~l~~~g 29 (130)
T COG0784 4 SGLRVLVVDD---EPVNRRLLKRLLEDLG 29 (130)
T ss_pred CCcEEEEEcC---CHHHHHHHHHHHHHcC
Confidence 5688999999 4444555556666677
No 120
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=33.09 E-value=1.9e+02 Score=27.00 Aligned_cols=146 Identities=17% Similarity=0.170 Sum_probs=0.0
Q ss_pred hHHHHHhcccccCCCCCCCCceEEechhhccCHHHHH-HHHHHHHHHhccCCcc-EEEecCCcchhHHHHHHHHhCCCeE
Q 025851 76 PRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFR-DTIDLFVERYKDKNIS-VVAGIEARGFIFGPPIALAIGAKFV 153 (247)
Q Consensus 76 ~~~~~l~~~ir~~p~fp~~gi~f~Di~~ll~dp~~~~-~l~~~La~~~~~~~iD-vVVgve~rGf~lA~~LA~~Lg~p~v 153 (247)
..+++.++..+..|+ ..+|.|+..=-.||+.-. ..+.++.+..... +| +|+|+-++|-. +.+++.|.-..=
T Consensus 123 ~a~~~a~el~~~~p~----~~~~~~Qf~NpaN~~aH~~tT~~EI~~~~~g~-~d~fVagvGTGGTi--tGvar~Lk~~~p 195 (300)
T COG0031 123 GAIERAKELAAEIPG----YAVWLNQFENPANPEAHYETTGPEIWQQTDGK-VDAFVAGVGTGGTI--TGVARYLKERNP 195 (300)
T ss_pred HHHHHHHHHHHhCCC----ceEchhhcCCCccHHHHHhhhHHHHHHHhCCC-CCEEEEeCCcchhH--HHHHHHHHhhCC
Q ss_pred EeeccCCCCCceeeeeeeeccccceeE-EeecccCCCCEEEEEecch------------------------hhhHHHHHH
Q 025851 154 PMRKPKKLPGEVISEEYSLEYGKDVME-MHVGAVQAGERALIVDDLV------------------------ATGGTLSAA 208 (247)
Q Consensus 154 ~iRK~~kl~~~~~s~~y~~e~g~~~~~-l~~~~~~~GkrVLIVDDIl------------------------tTG~Tl~aa 208 (247)
-++--.-.|.....-++.. +...++ +..+.+...-.--+||+++ +||..+.++
T Consensus 196 ~i~iv~vdP~~S~~~~~G~--g~~~i~GIG~~~ip~~~~~~~iD~v~~V~d~~A~~~~r~La~~eGilvG~SsGA~~~aa 273 (300)
T COG0031 196 NVRIVAVDPEGSVLLSGGE--GPHKIEGIGAGFVPENLDLDLIDEVIRVSDEEAIATARRLAREEGLLVGISSGAALAAA 273 (300)
T ss_pred CcEEEEECCCCCcccCCCC--CCcccCCCCCCcCCcccccccCceEEEECHHHHHHHHHHHHHHhCeeecccHHHHHHHH
Q ss_pred HHHHHhCCCeEEEEEEEEeccC
Q 025851 209 IRLLERVGVHVVECACVIELPE 230 (247)
Q Consensus 209 ~~lLk~aGa~vV~v~vlv~~~~ 230 (247)
.++.++.+....-+..+.|.++
T Consensus 274 ~~~a~~~~~g~~IVti~pD~G~ 295 (300)
T COG0031 274 LKLAKELPAGKTIVTILPDSGE 295 (300)
T ss_pred HHHHHhcCCCCeEEEEECCCcc
No 121
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=32.73 E-value=78 Score=26.24 Aligned_cols=46 Identities=15% Similarity=0.281 Sum_probs=31.0
Q ss_pred cCHHHHHHHHHHHHHHhccCCccEEEecC-CcchhHHHHHHHHhCCCeEE
Q 025851 106 LDTKAFRDTIDLFVERYKDKNISVVAGIE-ARGFIFGPPIALAIGAKFVP 154 (247)
Q Consensus 106 ~dp~~~~~l~~~La~~~~~~~iDvVVgve-~rGf~lA~~LA~~Lg~p~v~ 154 (247)
.+++.+..+...+. +..++|+|+... ..|--++..+|.+||.+++.
T Consensus 74 ~~~~~~a~~l~~~i---~~~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vs 120 (181)
T cd01985 74 YDPEATAKALAALI---KKEKPDLILAGATSIGKQLAPRVAALLGVPQIS 120 (181)
T ss_pred CChHHHHHHHHHHH---HHhCCCEEEECCcccccCHHHHHHHHhCCCcce
Confidence 34555554444443 334578766654 67889999999999998863
No 122
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=31.78 E-value=1e+02 Score=31.59 Aligned_cols=42 Identities=19% Similarity=0.047 Sum_probs=29.3
Q ss_pred HHHHHHHHHhccCCccEEEecCCcchhH-HHHHHHHhCC--CeEE
Q 025851 113 DTIDLFVERYKDKNISVVAGIEARGFIF-GPPIALAIGA--KFVP 154 (247)
Q Consensus 113 ~l~~~La~~~~~~~iDvVVgve~rGf~l-A~~LA~~Lg~--p~v~ 154 (247)
.+.+.+.+.+...++|+++.+|.-||++ -..-++..|+ |.+.
T Consensus 297 ~~~~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviy 341 (608)
T PRK01021 297 YRYRKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVH 341 (608)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEE
Confidence 3445556666667899999999999965 2344456675 7664
No 123
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=30.89 E-value=55 Score=26.67 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=29.8
Q ss_pred cCHHHHHHHHHHHHHHhccCCccEEEecC-CcchhHHHHHHHHhCCCeEE
Q 025851 106 LDTKAFRDTIDLFVERYKDKNISVVAGIE-ARGFIFGPPIALAIGAKFVP 154 (247)
Q Consensus 106 ~dp~~~~~l~~~La~~~~~~~iDvVVgve-~rGf~lA~~LA~~Lg~p~v~ 154 (247)
.+|+.+..+...+.+. .++|+|+... ..|--++..+|..||.|++.
T Consensus 73 ~~~~~~a~~l~~~~~~---~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~ 119 (164)
T PF01012_consen 73 YDPEAYADALAELIKE---EGPDLVLFGSTSFGRDLAPRLAARLGAPLVT 119 (164)
T ss_dssp C-HHHHHHHHHHHHHH---HT-SEEEEESSHHHHHHHHHHHHHHT-EEEE
T ss_pred cCHHHHHHHHHHHHHh---cCCCEEEEcCcCCCCcHHHHHHHHhCCCccc
Confidence 4677655555554444 4677666554 57778999999999999874
No 124
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=30.51 E-value=92 Score=28.07 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=28.3
Q ss_pred hccCCccEEEecCCc---chhHHHHHHHHhCCCeEEeeccC
Q 025851 122 YKDKNISVVAGIEAR---GFIFGPPIALAIGAKFVPMRKPK 159 (247)
Q Consensus 122 ~~~~~iDvVVgve~r---Gf~lA~~LA~~Lg~p~v~iRK~~ 159 (247)
+++.++|++|+=++| |+.-=-..|+.+|+|+++++++.
T Consensus 193 ~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~ 233 (256)
T TIGR00715 193 LREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARPQ 233 (256)
T ss_pred HHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCC
Confidence 344579999999974 45433467889999999987654
No 125
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=29.70 E-value=96 Score=25.84 Aligned_cols=38 Identities=21% Similarity=0.248 Sum_probs=27.6
Q ss_pred CCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEE
Q 025851 187 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVI 226 (247)
Q Consensus 187 ~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv 226 (247)
.+||+|+|+-|- -|----+..+.++.+|++++...+=+
T Consensus 3 l~gkKviiiGdR--DGiPgpAie~c~~~~gaevvfs~TeC 40 (150)
T PF04723_consen 3 LEGKKVIIIGDR--DGIPGPAIEECVKTAGAEVVFSSTEC 40 (150)
T ss_pred cCCcEEEEEecC--CCCCcHHHHHHHHhcCceEEEEeeeE
Confidence 579999999874 35555566667788899998765433
No 126
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=29.55 E-value=5.1e+02 Score=24.84 Aligned_cols=42 Identities=10% Similarity=0.120 Sum_probs=26.4
Q ss_pred eEEeecccCCCCEEEEEecchh---------------hhHHHHH---HHHHHHhCCCeEEE
Q 025851 179 MEMHVGAVQAGERALIVDDLVA---------------TGGTLSA---AIRLLERVGVHVVE 221 (247)
Q Consensus 179 ~~l~~~~~~~GkrVLIVDDIlt---------------TG~Tl~a---a~~lLk~aGa~vV~ 221 (247)
..++....++|+.|+||-+... .-..+.+ +++.++ +||+.+.
T Consensus 67 ~~vri~~~Vrg~dV~ivqs~~~~~v~~~~~~~~~~~p~nd~lmeLll~idalr-agA~rIt 126 (382)
T PRK06827 67 AKGEILESVRGKDIYILQDVGNYSVTYNMFGEKNHMSPDDHFQDLKRTIDAIR-GKARRIT 126 (382)
T ss_pred EEEEECCCCCCCeEEEEecCCcccccccccccccCCCCcHHHHHHHHHHHHHh-cCCCeEE
Confidence 3444344468999999998642 1222333 677778 8987554
No 127
>COG4273 Uncharacterized conserved protein [Function unknown]
Probab=27.47 E-value=98 Score=25.38 Aligned_cols=38 Identities=29% Similarity=0.447 Sum_probs=34.1
Q ss_pred CCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEecc
Q 025851 187 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELP 229 (247)
Q Consensus 187 ~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~~~ 229 (247)
..|++||-+| |=+++-+.+.|.++|.++-.-+++-+++
T Consensus 65 rsgrrIlalD-----GCp~~Catk~l~~AGv~~D~~l~itdlG 102 (135)
T COG4273 65 RSGRRILALD-----GCPLRCATKCLAEAGVQADVHLTITDLG 102 (135)
T ss_pred hcCCceEEec-----CChHHHHHHHHHHhccceeEEEEehhcc
Confidence 5899999999 9999999999999999988888887764
No 128
>PRK04311 selenocysteine synthase; Provisional
Probab=27.24 E-value=1.7e+02 Score=28.65 Aligned_cols=113 Identities=18% Similarity=0.313 Sum_probs=60.1
Q ss_pred CCCCCCceEEec-hhhccCHHHHHHHHHHHHHHhccCCccEEEecCCcc---hhHHHHHHHHhCCCeEEeeccCCCCCce
Q 025851 90 DFPKPGIMFQDI-TTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARG---FIFGPPIALAIGAKFVPMRKPKKLPGEV 165 (247)
Q Consensus 90 ~fp~~gi~f~Di-~~ll~dp~~~~~l~~~La~~~~~~~iDvVVgve~rG---f~lA~~LA~~Lg~p~v~iRK~~kl~~~~ 165 (247)
-++..|.+|.+. ..-...+++.+.+.+.+.. +.+.+.|...+ .+| -.+...+|..+|.....+-..
T Consensus 81 vinatg~v~~tNlg~s~l~~~v~eav~~~~~~-~~~le~~l~~g--~~g~r~~~~e~~lA~l~Gae~a~vv~s------- 150 (464)
T PRK04311 81 VINATGVVLHTNLGRALLSEAAIEAVTEAARG-YSNLEYDLATG--KRGSRDRALAALLCALTGAEDALVVNN------- 150 (464)
T ss_pred eecCCccEEeccCCCCCCCHHHHHHHHHHHhc-ccccccchhhc--ccchHHHHHHHHHHHHhCCCeEEEECC-------
Confidence 456667654444 3334556666666555432 22222332111 223 245567777777754433211
Q ss_pred eeeeeeeccccceeEEeecccCCCCEEEEEec-chhhhHHHHHHHHHHHhCCCeEEEE
Q 025851 166 ISEEYSLEYGKDVMEMHVGAVQAGERALIVDD-LVATGGTLSAAIRLLERVGVHVVEC 222 (247)
Q Consensus 166 ~s~~y~~e~g~~~~~l~~~~~~~GkrVLIVDD-IltTG~Tl~aa~~lLk~aGa~vV~v 222 (247)
+...+.+-...+.+|++|++-|. .+.+|++.. ..+.++..|++++.+
T Consensus 151 ---------gtaAl~l~l~~l~~GdeVIvs~~e~~~~ggs~~-i~~~~~~~G~~l~~v 198 (464)
T PRK04311 151 ---------NAAAVLLALNALAAGKEVIVSRGELVEIGGAFR-IPDVMRQAGARLVEV 198 (464)
T ss_pred ---------HHHHHHHHHHHhCCCCEEEEcchhhhhcCcchh-hHHHHHHCCcEEEEE
Confidence 11222111123467888888885 788888876 456677888876554
No 129
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=26.50 E-value=92 Score=22.69 Aligned_cols=35 Identities=11% Similarity=0.246 Sum_probs=25.3
Q ss_pred CEEEEEecchhhhHHHHHHHHHHHhC--CCeEEEEEE
Q 025851 190 ERALIVDDLVATGGTLSAAIRLLERV--GVHVVECAC 224 (247)
Q Consensus 190 krVLIVDDIltTG~Tl~aa~~lLk~a--Ga~vV~v~v 224 (247)
..+.+|||.-.+=..+.++++.+++. +.+++.++.
T Consensus 12 ~~~~vi~D~ahNp~s~~a~l~~l~~~~~~~~~i~V~G 48 (91)
T PF02875_consen 12 NGPTVIDDYAHNPDSIRALLEALKELYPKGRIIAVFG 48 (91)
T ss_dssp TTEEEEEET--SHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred CCcEEEEECCCCHHHHHHHHHHHHHhccCCcEEEEEc
Confidence 45778888999999999999999886 345555544
No 130
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=26.34 E-value=2.3e+02 Score=21.81 Aligned_cols=85 Identities=13% Similarity=0.199 Sum_probs=46.0
Q ss_pred EEEecCCcch-hHHHHHHHHhCCCeEEeeccCCCCCceeeeeeeeccccceeEEeecccC---CCCEEEEEecchhhhHH
Q 025851 129 VVAGIEARGF-IFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQ---AGERALIVDDLVATGGT 204 (247)
Q Consensus 129 vVVgve~rGf-~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l~~~~~~---~GkrVLIVDDIltTG~T 204 (247)
+++|.+.-|= .++..+|..++.++..+.-.......-....|... ....++..+.+. ....|+++|++=..-.+
T Consensus 3 lL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~--~~~~~~~~~~l~~a~~~~~il~lDEin~a~~~ 80 (139)
T PF07728_consen 3 LLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPS--NGQFEFKDGPLVRAMRKGGILVLDEINRAPPE 80 (139)
T ss_dssp EEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET---TTTTCEEE-CCCTTHHEEEEEEESSCGG--HH
T ss_pred EEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeec--ccccccccccccccccceeEEEECCcccCCHH
Confidence 4677776664 78899999999888765432211111111222222 222333334333 35789999999876666
Q ss_pred HHHHHHHHHhC
Q 025851 205 LSAAIRLLERV 215 (247)
Q Consensus 205 l~aa~~lLk~a 215 (247)
+...+.-+-+.
T Consensus 81 v~~~L~~ll~~ 91 (139)
T PF07728_consen 81 VLESLLSLLEE 91 (139)
T ss_dssp HHHTTHHHHSS
T ss_pred HHHHHHHHHhh
Confidence 66666555444
No 131
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=26.33 E-value=3.3e+02 Score=24.55 Aligned_cols=48 Identities=10% Similarity=0.103 Sum_probs=35.6
Q ss_pred ccCHHHHHHHHHHHHHHhccCCccEEEecCCcchhHHHHHHHHhCCCeEEe
Q 025851 105 LLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPM 155 (247)
Q Consensus 105 l~dp~~~~~l~~~La~~~~~~~iDvVVgve~rGf~lA~~LA~~Lg~p~v~i 155 (247)
-.+|......++.|.+ +.++++|+|.-..+...+..++...++|++..
T Consensus 53 ~~~p~~a~~~~~~li~---~~~v~~iiG~~~s~~~~~~~~~~~~~ip~i~~ 100 (347)
T cd06336 53 KYDPAEAAANARRLVQ---QDGVKFILGPIGGGITAAQQITERNKVLLLTA 100 (347)
T ss_pred CCCHHHHHHHHHHHHh---hcCceEEEeCCCCchhhhhhhhhhcCceEEec
Confidence 4678877777776654 33689999988777766677888889988753
No 132
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=25.82 E-value=1.6e+02 Score=27.68 Aligned_cols=40 Identities=20% Similarity=0.202 Sum_probs=28.9
Q ss_pred HHHHHHhccCCccEEEecCCcchhHHH-HHHHHhCCCeEEe
Q 025851 116 DLFVERYKDKNISVVAGIEARGFIFGP-PIALAIGAKFVPM 155 (247)
Q Consensus 116 ~~La~~~~~~~iDvVVgve~rGf~lA~-~LA~~Lg~p~v~i 155 (247)
....+.+++.++|+|+++..-||++.- .-|+.+|+|++..
T Consensus 79 ~~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~ 119 (385)
T TIGR00215 79 KEVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYY 119 (385)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEE
Confidence 344455666789999999988887432 3456679998864
No 133
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=25.73 E-value=2e+02 Score=26.59 Aligned_cols=35 Identities=14% Similarity=0.051 Sum_probs=24.7
Q ss_pred HHHhccCCccEEEecCCcchhHHHHHHHHhCCCeEEe
Q 025851 119 VERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPM 155 (247)
Q Consensus 119 a~~~~~~~iDvVVgve~rGf~lA~~LA~~Lg~p~v~i 155 (247)
.+.+...++|+|+.-. .+..|..+|+.+|+|++.+
T Consensus 85 ~~~~~~~~pDlVi~d~--~~~~~~~~A~~~giP~v~~ 119 (392)
T TIGR01426 85 EEAYKGDRPDLIVYDI--ASWTGRLLARKWDVPVISS 119 (392)
T ss_pred HHHhcCCCCCEEEECC--ccHHHHHHHHHhCCCEEEE
Confidence 3344456789887744 3457888999999998643
No 134
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=25.37 E-value=1.3e+02 Score=21.99 Aligned_cols=31 Identities=23% Similarity=0.238 Sum_probs=24.7
Q ss_pred CCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEE
Q 025851 187 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVV 220 (247)
Q Consensus 187 ~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV 220 (247)
.+++.|+++++ +|.....++..|++.|-+.+
T Consensus 59 ~~~~~ivvyC~---~G~rs~~a~~~L~~~G~~~v 89 (101)
T cd01518 59 LKGKKVLMYCT---GGIRCEKASAYLKERGFKNV 89 (101)
T ss_pred cCCCEEEEECC---CchhHHHHHHHHHHhCCcce
Confidence 47788999985 68777788889999998644
No 135
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=25.13 E-value=1.1e+02 Score=30.19 Aligned_cols=93 Identities=18% Similarity=0.204 Sum_probs=54.6
Q ss_pred CCCCCCceEEechhhccCHHHHHHHHHHHHHHhccCC-----------ccEEEecCCcch-hHHHHHHHHhCCCeEEeec
Q 025851 90 DFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKN-----------ISVVAGIEARGF-IFGPPIALAIGAKFVPMRK 157 (247)
Q Consensus 90 ~fp~~gi~f~Di~~ll~dp~~~~~l~~~La~~~~~~~-----------iDvVVgve~rGf-~lA~~LA~~Lg~p~v~iRK 157 (247)
+||+|. ...++..||+.=+.+.+-|.+-++..+ -=++-|+|.-|= .+-+++|..|+-.+..+--
T Consensus 193 ~f~Hps----tF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeL 268 (457)
T KOG0743|consen 193 GFPHPS----TFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLEL 268 (457)
T ss_pred CCCCCC----CccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeee
Confidence 466662 567788999999988888766544321 125666665554 5778899988765433210
Q ss_pred cCCCCCceeeeeeeeccccceeEEeec-ccCCCCEEEEEecchhh
Q 025851 158 PKKLPGEVISEEYSLEYGKDVMEMHVG-AVQAGERALIVDDLVAT 201 (247)
Q Consensus 158 ~~kl~~~~~s~~y~~e~g~~~~~l~~~-~~~~GkrVLIVDDIltT 201 (247)
. ..+..-+++.= ...+++.||||+||=.+
T Consensus 269 t---------------~v~~n~dLr~LL~~t~~kSIivIEDIDcs 298 (457)
T KOG0743|consen 269 T---------------EVKLDSDLRHLLLATPNKSILLIEDIDCS 298 (457)
T ss_pred c---------------cccCcHHHHHHHHhCCCCcEEEEeecccc
Confidence 0 00000011110 12478999999998544
No 136
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=24.99 E-value=87 Score=25.19 Aligned_cols=31 Identities=26% Similarity=0.273 Sum_probs=22.9
Q ss_pred chhhhHHHHHHHHH----HHhCCCeEEEEEEEEec
Q 025851 198 LVATGGTLSAAIRL----LERVGVHVVECACVIEL 228 (247)
Q Consensus 198 IltTG~Tl~aa~~l----Lk~aGa~vV~v~vlv~~ 228 (247)
--.||.|+..+++. |+..|.++..--..++.
T Consensus 18 C~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~ 52 (120)
T PF10865_consen 18 CGDTGETLREAVKELAPVLAPLGIEVRLEEIELDE 52 (120)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECCh
Confidence 45799999999988 55778887665555543
No 137
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=24.81 E-value=1.3e+02 Score=21.95 Aligned_cols=30 Identities=17% Similarity=0.292 Sum_probs=24.4
Q ss_pred cCCCCEEEEEecchhhhHHHHHHHHHHHhCCCe
Q 025851 186 VQAGERALIVDDLVATGGTLSAAIRLLERVGVH 218 (247)
Q Consensus 186 ~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~ 218 (247)
+.+++.|+++ ..+|.....+++.|++.|-.
T Consensus 58 ~~~~~~ivv~---C~~G~rs~~aa~~L~~~G~~ 87 (100)
T cd01523 58 LPDDQEVTVI---CAKEGSSQFVAELLAERGYD 87 (100)
T ss_pred CCCCCeEEEE---cCCCCcHHHHHHHHHHcCce
Confidence 3467888886 56888888999999999987
No 138
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=24.69 E-value=3.7e+02 Score=25.00 Aligned_cols=102 Identities=11% Similarity=0.080 Sum_probs=55.2
Q ss_pred HHHHHHhccCCccEEEecCCcch-hHHHHHHHHhCCCeEEeeccCCCCCceeeeeeeeccccceeEEeecccCCCCEEEE
Q 025851 116 DLFVERYKDKNISVVAGIEARGF-IFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALI 194 (247)
Q Consensus 116 ~~La~~~~~~~iDvVVgve~rGf-~lA~~LA~~Lg~p~v~iRK~~kl~~~~~s~~y~~e~g~~~~~l~~~~~~~GkrVLI 194 (247)
+.+++.+.+ ++-+|+|+-.++. ..+..++..+++|++...-...... .+.......+....+.+- .-..-++|.|
T Consensus 54 ~~~C~~~~~-gV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~~~~~-~f~i~~~p~~~~a~~~~i--~~~~wk~vai 129 (371)
T cd06388 54 NAFCSQYSR-GVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGES-QFVLQLRPSLRGALLSLL--DHYEWNRFVF 129 (371)
T ss_pred HHHHHHHhC-CceEEEecCCHHHHHHHHHHhhCCCCCeeecCccccCCC-ceEEEeChhhhhHHHHHH--HhcCceEEEE
Confidence 444555543 6889999987765 5668899999999986432100000 000000000000000000 0124577887
Q ss_pred EecchhhhHHHHHHHHHHHhCCCeEEE
Q 025851 195 VDDLVATGGTLSAAIRLLERVGVHVVE 221 (247)
Q Consensus 195 VDDIltTG~Tl~aa~~lLk~aGa~vV~ 221 (247)
+-|-=.-=+.+.+..+.+++.|.+++.
T Consensus 130 iYd~~~~~~~lq~l~~~~~~~g~~v~~ 156 (371)
T cd06388 130 LYDTDRGYSILQAIMEKAGQNGWQVSA 156 (371)
T ss_pred EecCCccHHHHHHHHHhhHhcCCeeee
Confidence 755322124588888888888988765
No 139
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.43 E-value=1.7e+02 Score=20.15 Aligned_cols=35 Identities=17% Similarity=0.311 Sum_probs=27.4
Q ss_pred EEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEe
Q 025851 191 RALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIE 227 (247)
Q Consensus 191 rVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~ 227 (247)
+++|+.++ ||.-+...++.+++.|..+..-+++.+
T Consensus 2 ~~ll~~g~--~~~el~~~l~~~r~~~~~~~~kAvlT~ 36 (58)
T PF12646_consen 2 EFLLFSGF--SGEELDKFLDALRKAGIPIPLKAVLTP 36 (58)
T ss_pred CEEEECCC--CHHHHHHHHHHHHHcCCCcceEEEECC
Confidence 57788887 899999999999999995555444443
No 140
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=24.06 E-value=1.4e+02 Score=27.03 Aligned_cols=32 Identities=38% Similarity=0.560 Sum_probs=26.9
Q ss_pred CCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEE
Q 025851 187 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVEC 222 (247)
Q Consensus 187 ~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v 222 (247)
.+|++|+|| -+|++.++++..|.+.|++.+.+
T Consensus 123 ~~~k~vlvl----GaGGaarai~~aL~~~G~~~i~I 154 (282)
T TIGR01809 123 LAGFRGLVI----GAGGTSRAAVYALASLGVTDITV 154 (282)
T ss_pred cCCceEEEE----cCcHHHHHHHHHHHHcCCCeEEE
Confidence 468899865 88999999999999999876554
No 141
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=23.49 E-value=4.3e+02 Score=23.69 Aligned_cols=111 Identities=11% Similarity=0.073 Sum_probs=59.1
Q ss_pred ccCHHHHHHHHHHHHHHhccCCccEEEecCCcchhHH-HHHHHHhCCCeEEeec-cCCCCCceeeeeeeeccccceeEEe
Q 025851 105 LLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFG-PPIALAIGAKFVPMRK-PKKLPGEVISEEYSLEYGKDVMEMH 182 (247)
Q Consensus 105 l~dp~~~~~l~~~La~~~~~~~iDvVVgve~rGf~lA-~~LA~~Lg~p~v~iRK-~~kl~~~~~s~~y~~e~g~~~~~l~ 182 (247)
-.+|+.....++.|.+ +.++++|+|.-..+...+ ..++...++|++..-- ......+.+ ++.. ........
T Consensus 49 ~~~p~~a~~~~~~Li~---~~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~~~~~~~---F~~~-~~~~~~~~ 121 (334)
T cd06356 49 QSDNERYQQYAQRLAL---QDKVDVVWGGISSASREAIRPIMDRTKQLYFYTTQYEGGVCDRNT---FCTG-ATPAQQFS 121 (334)
T ss_pred CCCHHHHHHHHHHHHH---hCCCCEEEeCcchHHHHHHHHHHHhcCceEEeCCCccCCcccCCE---EEeC-CCcHHHHH
Confidence 3678877777777754 347999999887776444 5577788999875310 011111111 1100 00000000
Q ss_pred e--cc--cCCCCEEEEEecchhhhH-HHHHHHHHHHhCCCeEEEE
Q 025851 183 V--GA--VQAGERALIVDDLVATGG-TLSAAIRLLERVGVHVVEC 222 (247)
Q Consensus 183 ~--~~--~~~GkrVLIVDDIltTG~-Tl~aa~~lLk~aGa~vV~v 222 (247)
. .. ...+++|.+|-.=...|. ......+.+++.|.+++..
T Consensus 122 ~~~~~~~~~~~~~vail~~d~~~g~~~~~~~~~~~~~~G~~vv~~ 166 (334)
T cd06356 122 TLVPYMMEKYGKKVYTIAADYNFGQISAEWVRKIVEENGGEVVGE 166 (334)
T ss_pred HHHHHHHHccCCeEEEECCCchhhHHHHHHHHHHHHHcCCEEEee
Confidence 0 00 113455655532233444 4566778889999988754
No 142
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=22.82 E-value=5.5e+02 Score=23.95 Aligned_cols=120 Identities=15% Similarity=0.216 Sum_probs=65.3
Q ss_pred CCCCCceEEec-hhhccCHHHHH----HHHHHHHHHhccCCccEEEecCCcchhHHHHHHHHhCCC-e-EEeeccCCCCC
Q 025851 91 FPKPGIMFQDI-TTLLLDTKAFR----DTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAK-F-VPMRKPKKLPG 163 (247)
Q Consensus 91 fp~~gi~f~Di-~~ll~dp~~~~----~l~~~La~~~~~~~iDvVVgve~rGf~lA~~LA~~Lg~p-~-v~iRK~~kl~~ 163 (247)
|..|.+++.|+ .+|..+.+..+ .+.+.|.+ +++ ..++++-=..||--.+..-+..++++ + -.+...+...+
T Consensus 119 ~~~phVIVfDlD~TLItd~~~v~Ir~~~v~~sL~~-Lk~-~g~vLvLWSyG~~eHV~~sl~~~~L~~~Fd~ii~~G~~~~ 196 (297)
T PF05152_consen 119 WEPPHVIVFDLDSTLITDEGDVRIRDPAVYDSLRE-LKE-QGCVLVLWSYGNREHVRHSLKELKLEGYFDIIICGGNKAG 196 (297)
T ss_pred CCCCcEEEEECCCcccccCCccccCChHHHHHHHH-HHH-cCCEEEEecCCCHHHHHHHHHHhCCccccEEEEeCCccCC
Confidence 66788999999 44444433322 22233322 332 34566666788888888888888875 2 22222222111
Q ss_pred ce-----eeeeeeeccccceeEEeecc---cCCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEEEEEe
Q 025851 164 EV-----ISEEYSLEYGKDVMEMHVGA---VQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIE 227 (247)
Q Consensus 164 ~~-----~s~~y~~e~g~~~~~l~~~~---~~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~vlv~ 227 (247)
.. ....+..-+....|.+.... +++-=||+ +..|++.|..-....++++
T Consensus 197 ~~~~~~~~d~~~~~~f~~~~FylDv~~~~~LPKSPrVV---------------L~yL~k~gvny~KtiTLVD 253 (297)
T PF05152_consen 197 EYNSRVIVDRQYKVIFVSKPFYLDVTNVNNLPKSPRVV---------------LWYLRKKGVNYFKTITLVD 253 (297)
T ss_pred cCCccceeecccceEEeccceEEeCCcCCCCCCCCeeh---------------HHHHHHcCCceeeeEEEec
Confidence 11 11111112223344443221 45555554 4788888888888888886
No 143
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=22.75 E-value=1.4e+02 Score=26.75 Aligned_cols=38 Identities=21% Similarity=0.408 Sum_probs=28.2
Q ss_pred hccCCccEEEecCCcchhHHH--HHHHHhCCCeEEeeccC
Q 025851 122 YKDKNISVVAGIEARGFIFGP--PIALAIGAKFVPMRKPK 159 (247)
Q Consensus 122 ~~~~~iDvVVgve~rGf~lA~--~LA~~Lg~p~v~iRK~~ 159 (247)
+++.++|++|+=++||--+-. ..|+.+|+|+++++++.
T Consensus 190 ~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~ 229 (249)
T PF02571_consen 190 FRQYGIDVLVTKESGGSGFDEKIEAARELGIPVIVIKRPP 229 (249)
T ss_pred HHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCC
Confidence 344579999999988763322 45788999999987654
No 144
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=22.56 E-value=5.3e+02 Score=25.43 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=26.0
Q ss_pred CCEEEEEecchhhhHHHHHHHHHHHhCCCeEEEEE
Q 025851 189 GERALIVDDLVATGGTLSAAIRLLERVGVHVVECA 223 (247)
Q Consensus 189 GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~v~ 223 (247)
...|.|+=++= .+-+.....+|++.|.+++...
T Consensus 193 ~~~vnl~G~~~--~~~~~~i~~lL~~lGI~v~~~l 225 (457)
T CHL00073 193 HPPLVLFGSLP--STVASQLTLELKRQGIKVSGWL 225 (457)
T ss_pred CCcEEEEEecC--cccHHHHHHHHHHcCCeEeEEe
Confidence 44788888877 4448899999999999998543
No 145
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=21.43 E-value=2.1e+02 Score=27.26 Aligned_cols=40 Identities=25% Similarity=0.270 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhccCCccEEEecCCcchhHH-HHHHHHhCCC
Q 025851 112 RDTIDLFVERYKDKNISVVAGIEARGFIFG-PPIALAIGAK 151 (247)
Q Consensus 112 ~~l~~~La~~~~~~~iDvVVgve~rGf~lA-~~LA~~Lg~p 151 (247)
..+.+.+.+.+...++|+|+.++.-||++- ..-++..|.+
T Consensus 68 ~~~~~~~~~~~~~~~pd~vIlID~pgFNlrlak~lk~~~~~ 108 (373)
T PF02684_consen 68 KRLFRKLVERIKEEKPDVVILIDYPGFNLRLAKKLKKRGIP 108 (373)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHHhCCC
Confidence 344455666666778999999999999642 1233445666
No 146
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=21.37 E-value=1.4e+02 Score=31.36 Aligned_cols=64 Identities=19% Similarity=0.403 Sum_probs=41.2
Q ss_pred CCCCceEEechhhccCHHHHHHHHHHHH--HHhccC--Cc---cEEEecCCcch-hHHHHHHHHhCCCeEEe
Q 025851 92 PKPGIMFQDITTLLLDTKAFRDTIDLFV--ERYKDK--NI---SVVAGIEARGF-IFGPPIALAIGAKFVPM 155 (247)
Q Consensus 92 p~~gi~f~Di~~ll~dp~~~~~l~~~La--~~~~~~--~i---DvVVgve~rGf-~lA~~LA~~Lg~p~v~i 155 (247)
+..||.|.|+..+=.-.+.+.++...|- ++|.+. ++ -+++|+|.-|- .+|.++|-+-|+||+.+
T Consensus 304 ~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~sv 375 (774)
T KOG0731|consen 304 GNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSV 375 (774)
T ss_pred CCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeee
Confidence 3467899998765333333444433332 122221 12 37889997776 89999999999999865
No 147
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=21.22 E-value=1.6e+02 Score=27.90 Aligned_cols=60 Identities=17% Similarity=0.277 Sum_probs=34.5
Q ss_pred CCCCCceEEechhhccCHHH--HHHHHHHHHHHhccC--CccEEEecCCcchhHHHHHHHHhCCCeEE
Q 025851 91 FPKPGIMFQDITTLLLDTKA--FRDTIDLFVERYKDK--NISVVAGIEARGFIFGPPIALAIGAKFVP 154 (247)
Q Consensus 91 fp~~gi~f~Di~~ll~dp~~--~~~l~~~La~~~~~~--~iDvVVgve~rGf~lA~~LA~~Lg~p~v~ 154 (247)
+|.-|+.+......+.|.-. +..+.+.+ ..++.. ++|+|+++ |||. +-..|...|+|++.
T Consensus 55 ~~sgg~~~~~~~~~~~~~~~gl~~~~~~~~-~~~~~~~~~p~~v~~~--Gg~v-~~~aA~~~~~p~~~ 118 (396)
T TIGR03492 55 LPSGGFSYQSLRGLLRDLRAGLVGLTLGQW-RALRKWAKKGDLIVAV--GDIV-PLLFAWLSGKPYAF 118 (396)
T ss_pred CCCCCccCCCHHHHHHHHHhhHHHHHHHHH-HHHHHHhhcCCEEEEE--CcHH-HHHHHHHcCCCceE
Confidence 34446555555555554432 22221111 112333 78988885 7888 67778888999887
No 148
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=21.06 E-value=1.6e+02 Score=21.52 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=25.8
Q ss_pred CCCCEEEEEecchhhhHHHHHHHHHHHhCCCeEEE
Q 025851 187 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVE 221 (247)
Q Consensus 187 ~~GkrVLIVDDIltTG~Tl~aa~~lLk~aGa~vV~ 221 (247)
.+++.|+++++ +|.+...+...|+..|-+.+.
T Consensus 64 ~~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v~ 95 (106)
T cd01519 64 SKDKELIFYCK---AGVRSKAAAELARSLGYENVG 95 (106)
T ss_pred CCCCeEEEECC---CcHHHHHHHHHHHHcCCccce
Confidence 46788999976 688888889999999987553
No 149
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=20.46 E-value=3.6e+02 Score=24.48 Aligned_cols=58 Identities=19% Similarity=0.096 Sum_probs=34.7
Q ss_pred CceEEechhhccCHHHHHHHHHHHHHHhccCCccEEEec----CCcchhHHHHHHHHhCCCeEEe
Q 025851 95 GIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGI----EARGFIFGPPIALAIGAKFVPM 155 (247)
Q Consensus 95 gi~f~Di~~ll~dp~~~~~l~~~La~~~~~~~iDvVVgv----e~rGf~lA~~LA~~Lg~p~v~i 155 (247)
+++..|-..--.||.... ..++..++..++|+|++= +...=-.+..+|..||.|.+..
T Consensus 83 aili~d~~~~~~d~~~ta---~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~ 144 (260)
T COG2086 83 AILITDRAFAGADPLATA---KALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTY 144 (260)
T ss_pred EEEEecccccCccHHHHH---HHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeee
Confidence 555555444445555444 444444455567776663 2222357789999999998753
No 150
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=20.14 E-value=2e+02 Score=27.48 Aligned_cols=40 Identities=15% Similarity=0.270 Sum_probs=29.6
Q ss_pred HHHHHHhccCCccEEEecCCcc-hhHHHHHHHHhCCCeEEe
Q 025851 116 DLFVERYKDKNISVVAGIEARG-FIFGPPIALAIGAKFVPM 155 (247)
Q Consensus 116 ~~La~~~~~~~iDvVVgve~rG-f~lA~~LA~~Lg~p~v~i 155 (247)
+.+.....+.+.|+|+|+-.|- +-.|..+|..+|+||+.+
T Consensus 74 ~~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~~~~pfIsv 114 (360)
T COG0371 74 ERLAAEAGEDGADVVIGVGGGKTIDTAKAAAYRLGLPFISV 114 (360)
T ss_pred HHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHcCCCEEEe
Confidence 3344444434689999997654 478999999999999875
Done!