BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025852
(247 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93VG8|PPDEX_ARATH DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486
PE=2 SV=1
Length = 224
Score = 219 bits (558), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 96/176 (54%), Positives = 130/176 (73%), Gaps = 1/176 (0%)
Query: 41 APVYLNVYDLTPMNGYVHWAGLGIYHSGVEVHGVEYAFGAHDYPTSGVFEVEPRLCPGFK 100
PVYLNVYDLTP+N Y++W G+GI+HSG+E H +EY +GAH+YPTSGV+EVEPR CPGF
Sbjct: 26 TPVYLNVYDLTPVNNYLYWFGIGIFHSGIEAHNLEYCYGAHEYPTSGVYEVEPRNCPGFI 85
Query: 101 FRKSIFIGTTCLDPIQVREFMERQSAHYNGDTYHLIVKNCNHFCKDICYKLTGKPIPKWV 160
FR+S+ +GTT + R +ME+ S Y+GDTYHLI KNCNHF +++C +LTGKPIP W+
Sbjct: 86 FRRSVLLGTTSMSRSDFRSYMEKLSRKYHGDTYHLIAKNCNHFTEEVCLQLTGKPIPGWI 145
Query: 161 NRLAKIGSVCNCVLPEALKISAVRHDPNYQPIDSDKRRLRSAFSCLSSISMRQKQL 216
NRLA++GS CNC+LPE+++++AV P SD+ S S +S ++ L
Sbjct: 146 NRLARVGSFCNCLLPESIQLTAVSALPERLEF-SDEDESNSEASSVSDEEGSEQHL 200
>sp|Q6DC39|DESI2_DANRE Desumoylating isopeptidase 2 OS=Danio rerio GN=desi2 PE=2 SV=1
Length = 196
Score = 124 bits (310), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 91/151 (60%), Gaps = 8/151 (5%)
Query: 42 PVYLNVYDLTPMNGYVHWAGLGIYHSGVEVHGVEYAFGAHDYPTSGVFEVEP----RLCP 97
PV LNVYD+ +N + G+G++HSG+E++G E+A+G H YP SG+FE+ P L
Sbjct: 5 PVILNVYDMYWINEFTSSLGIGVFHSGIEIYGREFAYGGHPYPFSGIFEITPGDATELGE 64
Query: 98 GFKFRKSIFIGTTCLDPIQVREFMERQSAHYNGDTYHLIVKNCNHFCKDICYKLTGKPIP 157
FKF+++I +G+T V +E Y G+ YHL+ KNCNHF + L G+ IP
Sbjct: 65 TFKFKEAIVLGSTDFTEEDVERIVEEMGKEYKGNAYHLMHKNCNHFSSALSEILCGREIP 124
Query: 158 KWVNRLAKIGS----VCNCVLPEALKISAVR 184
+WVNRLA S + +C+ E L +A++
Sbjct: 125 RWVNRLAYFSSCVPFLQSCLPKEWLTPAALQ 155
>sp|Q5PQ09|DESI2_XENLA Desumoylating isopeptidase 2 OS=Xenopus laevis GN=desi2 PE=2 SV=1
Length = 192
Score = 124 bits (310), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 92/151 (60%), Gaps = 8/151 (5%)
Query: 42 PVYLNVYDLTPMNGYVHWAGLGIYHSGVEVHGVEYAFGAHDYPTSGVFEVEP----RLCP 97
P+ LNVYD+ +N Y G+G++HSG++V+G E+A+G H YP SGVFE+ P L
Sbjct: 5 PIILNVYDMYWINEYTSSLGIGVFHSGIQVYGREFAYGGHPYPFSGVFEISPGDSTELGD 64
Query: 98 GFKFRKSIFIGTTCLDPIQVREFMERQSAHYNGDTYHLIVKNCNHFCKDICYKLTGKPIP 157
FKF+++I +G+T + + +E Y G+ YHL+ KNCNHF + L GK IP
Sbjct: 65 TFKFKEAIALGSTDFTENDIEKIIEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIP 124
Query: 158 KWVNRLAKIGS----VCNCVLPEALKISAVR 184
+WVNRLA + + +C+ E L +A++
Sbjct: 125 RWVNRLAYFSTCVPFLQSCLPKEWLTPAALQ 155
>sp|Q9D291|DESI2_MOUSE Desumoylating isopeptidase 2 OS=Mus musculus GN=Desi2 PE=2 SV=1
Length = 194
Score = 124 bits (310), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 91/150 (60%), Gaps = 8/150 (5%)
Query: 43 VYLNVYDLTPMNGYVHWAGLGIYHSGVEVHGVEYAFGAHDYPTSGVFEVEP----RLCPG 98
V LNVYD+ MN Y G+G++HSG+EV+G E+A+G H YP SG+FE+ P L
Sbjct: 7 VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGET 66
Query: 99 FKFRKSIFIGTTCLDPIQVREFMERQSAHYNGDTYHLIVKNCNHFCKDICYKLTGKPIPK 158
FKF++++ +G+T + + +E Y G+ YHL+ KNCNHF + L GK IP+
Sbjct: 67 FKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPR 126
Query: 159 WVNRLAKIGS----VCNCVLPEALKISAVR 184
W+NRLA S + +C+ E L +A++
Sbjct: 127 WINRLAYFSSCIPFLQSCLPKEWLTPAALQ 156
>sp|Q5R456|DESI2_PONAB Desumoylating isopeptidase 2 OS=Pongo abelii GN=DESI2 PE=2 SV=1
Length = 194
Score = 124 bits (310), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 91/150 (60%), Gaps = 8/150 (5%)
Query: 43 VYLNVYDLTPMNGYVHWAGLGIYHSGVEVHGVEYAFGAHDYPTSGVFEVEP----RLCPG 98
V LNVYD+ MN Y G+G++HSG+EV+G E+A+G H YP SG+FE+ P L
Sbjct: 7 VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGET 66
Query: 99 FKFRKSIFIGTTCLDPIQVREFMERQSAHYNGDTYHLIVKNCNHFCKDICYKLTGKPIPK 158
FKF++++ +G+T + + +E Y G+ YHL+ KNCNHF + L GK IP+
Sbjct: 67 FKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPR 126
Query: 159 WVNRLAKIGS----VCNCVLPEALKISAVR 184
W+NRLA S + +C+ E L +A++
Sbjct: 127 WINRLAYFSSCIPFLQSCLPKEWLTPAALQ 156
>sp|Q9BSY9|DESI2_HUMAN Desumoylating isopeptidase 2 OS=Homo sapiens GN=DESI2 PE=1 SV=1
Length = 194
Score = 124 bits (310), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 91/150 (60%), Gaps = 8/150 (5%)
Query: 43 VYLNVYDLTPMNGYVHWAGLGIYHSGVEVHGVEYAFGAHDYPTSGVFEVEP----RLCPG 98
V LNVYD+ MN Y G+G++HSG+EV+G E+A+G H YP SG+FE+ P L
Sbjct: 7 VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGET 66
Query: 99 FKFRKSIFIGTTCLDPIQVREFMERQSAHYNGDTYHLIVKNCNHFCKDICYKLTGKPIPK 158
FKF++++ +G+T + + +E Y G+ YHL+ KNCNHF + L GK IP+
Sbjct: 67 FKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPR 126
Query: 159 WVNRLAKIGS----VCNCVLPEALKISAVR 184
W+NRLA S + +C+ E L +A++
Sbjct: 127 WINRLAYFSSCIPFLQSCLPKEWLTPAALQ 156
>sp|A3QRX8|DESI2_PIG Desumoylating isopeptidase 2 OS=Sus scrofa GN=DESI2 PE=2 SV=1
Length = 194
Score = 123 bits (309), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 91/150 (60%), Gaps = 8/150 (5%)
Query: 43 VYLNVYDLTPMNGYVHWAGLGIYHSGVEVHGVEYAFGAHDYPTSGVFEVEP----RLCPG 98
V LNVYD+ MN Y G+G++HSG+EV+G E+A+G H YP SG+FE+ P L
Sbjct: 7 VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGET 66
Query: 99 FKFRKSIFIGTTCLDPIQVREFMERQSAHYNGDTYHLIVKNCNHFCKDICYKLTGKPIPK 158
FKF++++ +G+T + + +E Y G+ YHL+ KNCNHF + L GK IP+
Sbjct: 67 FKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPR 126
Query: 159 WVNRLAKIGS----VCNCVLPEALKISAVR 184
W+NRLA S + +C+ E L +A++
Sbjct: 127 WINRLAYFSSCIPFLQSCLPKEWLTPAALQ 156
>sp|Q5XIT6|DESI2_RAT Desumoylating isopeptidase 2 OS=Rattus norvegicus GN=Desi2 PE=2
SV=1
Length = 194
Score = 123 bits (309), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 91/150 (60%), Gaps = 8/150 (5%)
Query: 43 VYLNVYDLTPMNGYVHWAGLGIYHSGVEVHGVEYAFGAHDYPTSGVFEVEP----RLCPG 98
V LNVYD+ MN Y G+G++HSG+EV+G E+A+G H YP SG+FE+ P L
Sbjct: 7 VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNAAELGET 66
Query: 99 FKFRKSIFIGTTCLDPIQVREFMERQSAHYNGDTYHLIVKNCNHFCKDICYKLTGKPIPK 158
FKF++++ +G+T + + +E Y G+ YHL+ KNCNHF + L GK IP+
Sbjct: 67 FKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPR 126
Query: 159 WVNRLAKIGS----VCNCVLPEALKISAVR 184
W+NRLA S + +C+ E L +A++
Sbjct: 127 WINRLAYFSSCIPFLQSCLPKEWLTPAALQ 156
>sp|Q5ZIV7|DESI2_CHICK Desumoylating isopeptidase 2 OS=Gallus gallus GN=DESI2 PE=2 SV=1
Length = 193
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 91/150 (60%), Gaps = 8/150 (5%)
Query: 43 VYLNVYDLTPMNGYVHWAGLGIYHSGVEVHGVEYAFGAHDYPTSGVFEVEP----RLCPG 98
V LNVYD+ MN Y G+G++HSG+EV+G E+A+G H YP SG+FE+ P L
Sbjct: 6 VILNVYDMYWMNEYTSSLGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGET 65
Query: 99 FKFRKSIFIGTTCLDPIQVREFMERQSAHYNGDTYHLIVKNCNHFCKDICYKLTGKPIPK 158
FKF++++ +G+T + + +E + G+ YHL+ KNCNHF + L GK IP+
Sbjct: 66 FKFKEAVVLGSTDFMEDDIEKIVEELGKEFKGNAYHLMHKNCNHFSSALSEILCGKEIPR 125
Query: 159 WVNRLAKIGS----VCNCVLPEALKISAVR 184
WVNRLA S + +C+ E L +A++
Sbjct: 126 WVNRLAYFSSCIPFLQSCLPKEWLTPAALQ 155
>sp|Q8X1T0|HAG1_SCHPO DeSI-like protein hag1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=hag1 PE=1 SV=1
Length = 201
Score = 104 bits (260), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 84/141 (59%), Gaps = 9/141 (6%)
Query: 43 VYLNVYDL---TPMNGYVHWAGLGIYHSGVEVHGVEYAFGAHDYP-TSGVFEVEPRL-CP 97
VY+NVYDL +P+N GLGIYH+G+ + G EYAFGAH+ P ++GVF PR
Sbjct: 3 VYINVYDLMPDSPVNKLAWTLGLGIYHTGLVLEGKEYAFGAHEIPGSTGVFATMPRPPLE 62
Query: 98 GFKFRKSIFIGTTCLDPIQVREFMERQSAHYNGDTYHLIVKNCNHFCKDICYKLTGKPIP 157
G ++R SI + L V + R S + G +Y L+ +NCNHF +LTG PIP
Sbjct: 63 GCRWRCSIALPNCTLPKPDVDRILIRLSQEFTGLSYSLLERNCNHFTNAAAIELTGSPIP 122
Query: 158 KWVNRLAKIG----SVCNCVL 174
++NR+++IG ++ N +L
Sbjct: 123 SFLNRISRIGLAFPTITNALL 143
>sp|Q4KM30|DESI1_RAT Desumoylating isopeptidase 1 OS=Rattus norvegicus GN=Desi1 PE=2
SV=1
Length = 168
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 12/133 (9%)
Query: 38 PGRAPVYLNVYDLTP-----MNGYVHWAGL-GIYHSGVEVHGVEYAFGAHDYPTSGVFEV 91
P PV L VYDL+ ++ + L GI+H+ + VH E+ FG+ SG+
Sbjct: 4 PNLYPVKLYVYDLSKGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGS-----SGISSC 58
Query: 92 EPRLCPGFKFRKSIFIGTTCLDPIQVREFMER-QSAHYNGDTYHLIVKNCNHFCKDICYK 150
P + +G T + E++ + + G+ Y+L NCN F ++
Sbjct: 59 TPGGTLLGPPDSVVDVGNTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQF 118
Query: 151 LTGKPIPKWVNRL 163
LTG+ IP ++ L
Sbjct: 119 LTGRKIPSYITDL 131
>sp|Q9CQT7|DESI1_MOUSE Desumoylating isopeptidase 1 OS=Mus musculus GN=Desi1 PE=1 SV=1
Length = 168
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 12/133 (9%)
Query: 38 PGRAPVYLNVYDLTP-----MNGYVHWAGL-GIYHSGVEVHGVEYAFGAHDYPTSGVFEV 91
P PV L VYDL+ ++ + L GI+H+ + VH E+ FG+ SG+
Sbjct: 4 PNLYPVKLYVYDLSKGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGS-----SGISSC 58
Query: 92 EPRLCPGFKFRKSIFIGTTCLDPIQVREFMER-QSAHYNGDTYHLIVKNCNHFCKDICYK 150
P + +G T + E++ + + G+ Y+L NCN F ++
Sbjct: 59 TPGGTLLGPPDSVVDVGNTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQF 118
Query: 151 LTGKPIPKWVNRL 163
LTG+ IP ++ L
Sbjct: 119 LTGRKIPSYITDL 131
>sp|Q6ICB0|DESI1_HUMAN Desumoylating isopeptidase 1 OS=Homo sapiens GN=DESI1 PE=1 SV=1
Length = 168
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 18/136 (13%)
Query: 38 PGRAPVYLNVYDLTP-----MNGYVHWAGL-GIYHSGVEVHGVEYAFGAHDY---PTSGV 88
P PV L VYDL+ ++ + L GI+H+ + VH E+ FG+ P G
Sbjct: 4 PNLYPVKLYVYDLSKGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGSGGISSCPPGGT 63
Query: 89 FEVEPRLCPGFKFRKSIFIGTTCLDPIQVREFMER-QSAHYNGDTYHLIVKNCNHFCKDI 147
P + +G+T + E++ + + G+ Y+L NCN F ++
Sbjct: 64 LLGPPD--------SVVDVGSTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEV 115
Query: 148 CYKLTGKPIPKWVNRL 163
LTG+ IP ++ L
Sbjct: 116 AQFLTGRKIPSYITDL 131
>sp|Q6GLM5|DESI1_XENLA Desumoylating isopeptidase 1 OS=Xenopus laevis GN=desi1 PE=2 SV=1
Length = 169
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 128 YNGDTYHLIVKNCNHFCKDICYKLTGKPIPKWVNRLAKIGSVCNCVLPEALK 179
++G++YHL NCN F ++ LTGK IP ++ L V + L +AL+
Sbjct: 97 FSGESYHLFDHNCNTFSNEVAQFLTGKKIPSYITELPS--EVLSTPLGQALR 146
>sp|P76065|YDAU_ECOLI Uncharacterized protein YdaU OS=Escherichia coli (strain K12)
GN=ydaU PE=4 SV=1
Length = 285
Score = 34.7 bits (78), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 120 FMERQSAHYNGDTYHLIVKNCNHFCKDIC-YKLTGKPIPKWVNRLAKIGSVCN 171
+M+ A Y DT HL + + + Y TGKPIPK NRLAKI + N
Sbjct: 23 YMQLYIADYLADTMHLSAEEHGAYLLLMFNYWQTGKPIPK--NRLAKIARLTN 73
>sp|Q9DE07|NBN_CHICK Nibrin OS=Gallus gallus GN=NBN PE=1 SV=1
Length = 753
Score = 33.9 bits (76), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 20/115 (17%)
Query: 63 GIYHSGVEVHGVEYAFGAHDYPTSGVFEVEPRLCPGFKFR---KSIFIGTTCLDPIQ--- 116
G + +G ++ G + + D GVFE KFR +S+ + ++CLD Q
Sbjct: 73 GTFVNGSKLSGASRSLQSGDRVNFGVFES--------KFRVEYESLVVCSSCLDVAQKTA 124
Query: 117 VREFMERQSA----HYNGDTYHLIVKNCNHFCKDICYKLTGKPI--PKWVNRLAK 165
+ E +++ + + HLI+++ K IC + G+PI P++ + L K
Sbjct: 125 LNEAIQQLGGLVVNEWTKECTHLIMESVKVTVKTICALICGRPIVKPEFFSELMK 179
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,016,599
Number of Sequences: 539616
Number of extensions: 3889127
Number of successful extensions: 6642
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6614
Number of HSP's gapped (non-prelim): 17
length of query: 247
length of database: 191,569,459
effective HSP length: 114
effective length of query: 133
effective length of database: 130,053,235
effective search space: 17297080255
effective search space used: 17297080255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)