BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025854
(247 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C7F8|AB13B_ARATH ABC transporter B family member 13 OS=Arabidopsis thaliana
GN=ABCB13 PE=3 SV=1
Length = 1245
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 123 FRTVACINATLPLSQISSVSEELCAECKGIGGDFARAYLSNVCVAKELHRN 173
+R A + A PL +S++E+L KG GGD+ RAY VA+E N
Sbjct: 824 WRVAAVVTACFPLLIAASLTEQLF--LKGFGGDYTRAYSRATSVAREAIAN 872
>sp|Q9C7F2|AB14B_ARATH ABC transporter B family member 14 OS=Arabidopsis thaliana
GN=ABCB14 PE=3 SV=1
Length = 1247
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 123 FRTVACINATLPLSQISSVSEELCAECKGIGGDFARAYLSNVCVAKELHRN 173
+R A + A PL +S++E+L KG GGD+ RAY +A+E N
Sbjct: 826 WRVAAVVTACFPLLIAASLTEQLF--LKGFGGDYTRAYSRATSLAREAISN 874
>sp|Q8CES0|NAA30_MOUSE N-alpha-acetyltransferase 30 OS=Mus musculus GN=Naa30 PE=2 SV=2
Length = 364
Score = 35.4 bits (80), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 156 FARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGF 215
F R Y++ + V + RNG+G +V K+ ++ + N+ A KLY GF
Sbjct: 281 FRRGYIAMLAVDSKYRRNGIGTNLVKKAIYAMVEGDCDEVVLETEITNKSALKLYENLGF 340
Query: 216 IFENDEPAWHARFLDRPRRILLWI 239
+ + ++ +D R+ LW+
Sbjct: 341 VRDKRLFRYYLNGVD-ALRLKLWL 363
>sp|Q147X3|NAA30_HUMAN N-alpha-acetyltransferase 30 OS=Homo sapiens GN=NAA30 PE=1 SV=1
Length = 362
Score = 35.0 bits (79), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 156 FARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGF 215
F R Y++ + V + RNG+G +V K+ ++ + N+ A KLY GF
Sbjct: 279 FRRGYIAMLAVDSKYRRNGIGTNLVKKAIYAMVEGDCDEVVLETEITNKSALKLYENLGF 338
Query: 216 IFENDEPAWHARFLDRPRRILLWI 239
+ + ++ +D R+ LW+
Sbjct: 339 VRDKRLFRYYLNGVD-ALRLKLWL 361
>sp|Q5R830|XYLB_PONAB Xylulose kinase OS=Pongo abelii GN=XYLB PE=2 SV=1
Length = 580
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 158 RAYLSNVCVAKELHRNGLGYEIVAKSKLVAQG 189
RA + +AK +H GLGY +++K+K++A G
Sbjct: 409 RALIEGQFMAKRIHAEGLGYRVMSKTKILATG 440
>sp|O75191|XYLB_HUMAN Xylulose kinase OS=Homo sapiens GN=XYLB PE=1 SV=3
Length = 536
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 158 RAYLSNVCVAKELHRNGLGYEIVAKSKLVAQG 189
RA + +AK +H GLGY +++K+K++A G
Sbjct: 409 RALIEGQFMAKRIHAEGLGYRVMSKTKILATG 440
>sp|Q3MIF4|XYLB_RAT Xylulose kinase OS=Rattus norvegicus GN=Xylb PE=2 SV=1
Length = 536
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 158 RAYLSNVCVAKELHRNGLGYEIVAKSKLVAQG 189
RA + +AK +H GLGY I+ K+K++A G
Sbjct: 409 RALVEGQFMAKRIHAEGLGYRIMPKTKILATG 440
>sp|Q0IHH1|NAA30_XENLA N-alpha-acetyltransferase 30 OS=Xenopus laevis GN=naa30 PE=2 SV=1
Length = 273
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 156 FARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGF 215
F R Y++ + V + R G+G +V K+ ++ + N+ A KLY GF
Sbjct: 190 FRRGYIAMLAVDSKYRRKGIGTHLVKKAIYAMVEGDCDEVVLETEITNKSALKLYENLGF 249
Query: 216 IFENDEPAWHARFLDRPRRILLWI 239
+ + ++ +D R+ LW+
Sbjct: 250 VRDKRLFRYYLNGVD-ALRLKLWL 272
>sp|Q3TNA1|XYLB_MOUSE Xylulose kinase OS=Mus musculus GN=Xylb PE=2 SV=1
Length = 551
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 158 RAYLSNVCVAKELHRNGLGYEIVAKSKLVAQG 189
RA + +AK +H GLGY ++ K+K++A G
Sbjct: 424 RALIEGQFMAKRIHAEGLGYRVMPKTKILATG 455
>sp|P23181|AACC1_PSEAI Gentamicin 3'-acetyltransferase OS=Pseudomonas aeruginosa GN=aacC1
PE=4 SV=1
Length = 177
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 160 YLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGF 215
Y+ ++ V+ E R G+ ++ K A G +YV + ++PA LY K G
Sbjct: 107 YIYDLAVSGEHRRQGIATALINLLKHEANALGAYVIYVQADYGDDPAVALYTKLGI 162
>sp|Q66665|UL37_EHV2 Capsid assembly protein 63 OS=Equine herpesvirus 2 (strain 86/87)
GN=63 PE=3 SV=1
Length = 965
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 59 SIDKSSLVVDETTAEDQLWAAACLRVRSFHQFDPDSFGVQDHKKHLAEREFEAMKERIAG 118
S+ ++ +++ + + Q + AACL + +QF + L+E +F+A+KE + G
Sbjct: 748 SLHETLVILSQACQDLQRFYAACLGILDQNQF----LATHPVQLDLSEPDFQAVKETLLG 803
Query: 119 KRKEFRTVACINA 131
+ +R VA + A
Sbjct: 804 CLRRYREVASLAA 816
>sp|O74311|NAA30_SCHPO N-alpha-acetyltransferase 30 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=MAK3 PE=3 SV=1
Length = 150
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 154 GDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKS 213
G R Y++ + + KE G+ ++ S V + G ++ + DNE A Y +
Sbjct: 65 GTTLRGYIAMLAIVKEYRGQGIATKLTQASLDVMKNRGAQEIVLETEVDNEAAMSFYERL 124
Query: 214 GF 215
GF
Sbjct: 125 GF 126
>sp|O34376|YOBR_BACSU Uncharacterized N-acetyltransferase YobR OS=Bacillus subtilis
(strain 168) GN=yobR PE=3 SV=1
Length = 247
Score = 31.6 bits (70), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 151 GIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLY 210
G GG LSN+ VA+E G G +++ A+ G +++ V +N A LY
Sbjct: 177 GYGG------LSNIVVAEEHRGKGAGTQVIRVLTEWAKNNGAERMFLQVMKENLAAVSLY 230
Query: 211 MKSGF 215
K GF
Sbjct: 231 GKIGF 235
>sp|C6WPR7|MSHD_ACTMD Mycothiol acetyltransferase OS=Actinosynnema mirum (strain ATCC
29888 / DSM 43827 / NBRC 14064 / IMRU 3971) GN=mshD PE=3
SV=1
Length = 297
Score = 31.2 bits (69), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 164 VCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGF 215
V V + GLG + + + G+ D++++V DN PA ++Y + GF
Sbjct: 235 VGVDPDAQGGGLGKALTLAGLVHLKSTGLRDVHLYVESDNSPAVRVYTRLGF 286
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,721,472
Number of Sequences: 539616
Number of extensions: 3505334
Number of successful extensions: 8049
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 8025
Number of HSP's gapped (non-prelim): 31
length of query: 247
length of database: 191,569,459
effective HSP length: 114
effective length of query: 133
effective length of database: 130,053,235
effective search space: 17297080255
effective search space used: 17297080255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)