Query 025854
Match_columns 247
No_of_seqs 261 out of 2260
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 10:17:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025854.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025854hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10146 aminoalkylphosphonic 99.7 5.6E-17 1.2E-21 126.5 12.7 136 64-220 3-138 (144)
2 PRK10140 putative acetyltransf 99.7 4.9E-16 1.1E-20 123.3 16.5 143 63-224 2-145 (162)
3 KOG3139 N-acetyltransferase [G 99.7 1.3E-15 2.7E-20 118.9 14.2 82 156-240 82-163 (165)
4 TIGR02382 wecD_rffC TDP-D-fuco 99.7 2.7E-15 5.8E-20 123.4 15.6 141 65-221 44-186 (191)
5 TIGR03827 GNAT_ablB putative b 99.7 3.5E-15 7.6E-20 129.0 15.1 136 63-224 114-249 (266)
6 PRK10975 TDP-fucosamine acetyl 99.6 8.9E-15 1.9E-19 120.5 15.8 142 65-222 47-190 (194)
7 PTZ00330 acetyltransferase; Pr 99.6 1.9E-14 4.2E-19 112.5 15.0 136 64-221 6-142 (147)
8 PF13420 Acetyltransf_4: Acety 99.6 1.3E-14 2.9E-19 114.5 14.0 140 67-223 1-142 (155)
9 KOG3216 Diamine acetyltransfer 99.6 2.3E-14 5.1E-19 110.7 14.0 142 64-220 3-146 (163)
10 PRK03624 putative acetyltransf 99.6 3.7E-14 8E-19 109.1 14.7 129 64-220 2-130 (140)
11 PLN02706 glucosamine 6-phospha 99.6 5.6E-14 1.2E-18 110.6 15.2 62 156-220 83-144 (150)
12 PF00583 Acetyltransf_1: Acety 99.6 9.9E-15 2.1E-19 103.0 9.5 61 156-216 23-83 (83)
13 COG0456 RimI Acetyltransferase 99.6 1.3E-14 2.9E-19 116.8 10.9 68 157-224 90-158 (177)
14 PRK09491 rimI ribosomal-protei 99.6 5.3E-14 1.2E-18 110.3 13.8 82 158-239 63-144 (146)
15 TIGR03103 trio_acet_GNAT GNAT- 99.6 3.5E-14 7.6E-19 134.0 15.1 157 29-220 59-217 (547)
16 PHA01807 hypothetical protein 99.6 5.6E-14 1.2E-18 111.5 13.5 128 70-220 9-141 (153)
17 TIGR03448 mycothiol_MshD mycot 99.6 1.2E-13 2.6E-18 120.5 16.4 65 157-221 225-289 (292)
18 TIGR02406 ectoine_EctA L-2,4-d 99.5 8.9E-14 1.9E-18 110.9 12.7 66 155-220 63-128 (157)
19 PRK09831 putative acyltransfer 99.5 6.4E-14 1.4E-18 110.2 11.0 128 65-222 1-128 (147)
20 PRK10809 ribosomal-protein-S5- 99.5 6.3E-13 1.4E-17 109.2 16.7 155 57-224 10-170 (194)
21 PF13523 Acetyltransf_8: Acety 99.5 4.2E-13 9E-18 105.9 14.3 141 67-222 1-143 (152)
22 PF13673 Acetyltransf_10: Acet 99.5 2.6E-13 5.7E-18 101.8 12.0 116 76-215 2-117 (117)
23 COG1247 Sortase and related ac 99.5 1.1E-12 2.5E-17 104.9 15.5 162 65-243 2-166 (169)
24 PHA00673 acetyltransferase dom 99.5 4.6E-13 1E-17 105.7 12.9 100 115-221 48-147 (154)
25 PRK07922 N-acetylglutamate syn 99.5 1.1E-12 2.3E-17 106.0 13.9 124 63-221 4-128 (169)
26 PRK15130 spermidine N1-acetylt 99.5 1.2E-12 2.6E-17 106.7 14.3 145 61-223 3-148 (186)
27 PRK10314 putative acyltransfer 99.5 4.3E-13 9.2E-18 106.6 11.0 125 68-221 10-135 (153)
28 PRK10514 putative acetyltransf 99.5 2.2E-12 4.8E-17 100.7 14.8 126 65-222 2-128 (145)
29 PRK10151 ribosomal-protein-L7/ 99.5 9.5E-12 2.1E-16 100.8 17.6 90 124-224 69-159 (179)
30 PRK07757 acetyltransferase; Pr 99.4 1.9E-12 4.1E-17 102.1 12.9 121 65-220 2-122 (152)
31 TIGR01575 rimI ribosomal-prote 99.4 1.6E-12 3.4E-17 99.0 11.5 86 126-224 35-120 (131)
32 PF13527 Acetyltransf_9: Acety 99.4 1.9E-12 4E-17 98.8 10.4 127 66-218 1-127 (127)
33 TIGR01686 FkbH FkbH-like domai 99.4 4.8E-12 1E-16 112.3 13.8 128 65-218 187-319 (320)
34 TIGR03585 PseH pseudaminic aci 99.4 7.3E-12 1.6E-16 98.8 13.1 104 109-224 38-142 (156)
35 KOG3235 Subunit of the major N 99.4 5.4E-13 1.2E-17 103.7 5.9 151 65-243 2-155 (193)
36 PLN02825 amino-acid N-acetyltr 99.4 5.4E-12 1.2E-16 117.5 13.2 121 67-220 370-490 (515)
37 PRK05279 N-acetylglutamate syn 99.4 5E-12 1.1E-16 116.8 13.0 123 65-220 295-417 (441)
38 KOG3396 Glucosamine-phosphate 99.4 8.4E-12 1.8E-16 94.7 11.8 133 65-220 7-144 (150)
39 TIGR01890 N-Ac-Glu-synth amino 99.4 4.8E-12 1E-16 116.5 12.0 124 65-221 283-406 (429)
40 PRK10562 putative acetyltransf 99.4 1.7E-11 3.6E-16 96.1 13.2 125 67-221 2-126 (145)
41 COG1246 ArgA N-acetylglutamate 99.4 1.7E-11 3.6E-16 95.8 12.1 79 127-220 45-123 (153)
42 PF13508 Acetyltransf_7: Acety 99.3 1.3E-11 2.9E-16 86.7 10.3 75 124-217 5-79 (79)
43 PRK12308 bifunctional arginino 99.3 1.1E-11 2.3E-16 118.9 12.5 123 64-221 463-585 (614)
44 PF08445 FR47: FR47-like prote 99.3 7.9E-12 1.7E-16 89.8 8.4 61 159-220 22-82 (86)
45 TIGR03448 mycothiol_MshD mycot 99.3 2E-11 4.3E-16 106.4 12.5 85 123-223 47-131 (292)
46 PF13302 Acetyltransf_3: Acety 99.3 8.2E-11 1.8E-15 91.0 14.3 86 122-216 56-142 (142)
47 KOG3234 Acetyltransferase, (GN 99.3 9.7E-12 2.1E-16 96.6 6.3 91 155-246 66-156 (173)
48 PRK13688 hypothetical protein; 99.2 7.6E-11 1.6E-15 94.0 10.5 59 155-221 76-134 (156)
49 PRK01346 hypothetical protein; 99.2 9.2E-11 2E-15 107.3 12.5 135 64-224 6-140 (411)
50 KOG2488 Acetyltransferase (GNA 99.2 2.7E-11 5.9E-16 97.0 7.6 91 126-223 95-185 (202)
51 KOG3138 Predicted N-acetyltran 99.2 5.9E-11 1.3E-15 96.3 8.1 69 158-226 89-158 (187)
52 cd02169 Citrate_lyase_ligase C 99.2 1.2E-10 2.6E-15 102.0 10.0 77 123-219 6-83 (297)
53 TIGR00124 cit_ly_ligase [citra 99.1 8.4E-10 1.8E-14 98.1 13.1 82 122-223 31-112 (332)
54 COG3153 Predicted acetyltransf 99.1 2.1E-09 4.5E-14 86.3 13.8 145 64-242 3-151 (171)
55 COG3393 Predicted acetyltransf 99.1 4.7E-10 1E-14 94.7 10.2 69 152-221 195-263 (268)
56 COG1670 RimL Acetyltransferase 99.0 1.5E-08 3.1E-13 81.3 13.6 81 136-223 80-161 (187)
57 TIGR01211 ELP3 histone acetylt 98.8 2.3E-08 5E-13 93.7 10.4 60 158-220 446-516 (522)
58 KOG3397 Acetyltransferases [Ge 98.8 1.5E-08 3.4E-13 80.2 7.4 65 152-220 77-141 (225)
59 PF13718 GNAT_acetyltr_2: GNAT 98.6 3.7E-07 8.1E-12 74.9 11.1 83 156-241 88-195 (196)
60 COG3981 Predicted acetyltransf 98.6 6.2E-07 1.3E-11 71.2 10.4 84 131-222 78-161 (174)
61 PF08444 Gly_acyl_tr_C: Aralky 98.5 2.2E-07 4.8E-12 66.3 5.3 64 157-221 18-81 (89)
62 COG2153 ElaA Predicted acyltra 98.5 8.8E-07 1.9E-11 68.4 8.5 87 124-223 51-139 (155)
63 cd04301 NAT_SF N-Acyltransfera 98.4 1.3E-06 2.9E-11 56.6 7.1 59 129-197 6-64 (65)
64 COG3818 Predicted acetyltransf 98.3 2.5E-05 5.3E-10 59.4 11.8 67 155-221 81-149 (167)
65 KOG4135 Predicted phosphogluco 98.2 1.3E-05 2.7E-10 62.2 9.2 66 156-221 105-171 (185)
66 COG0454 WecD Histone acetyltra 98.2 2.6E-06 5.6E-11 60.8 5.0 44 164-215 87-130 (156)
67 PF12746 GNAT_acetyltran: GNAT 98.2 6.3E-06 1.4E-10 71.0 7.5 66 155-224 186-251 (265)
68 PF14542 Acetyltransf_CG: GCN5 98.2 3.1E-05 6.8E-10 54.3 9.6 54 155-213 19-72 (78)
69 COG1444 Predicted P-loop ATPas 98.0 2.1E-05 4.6E-10 76.1 8.8 83 157-243 530-612 (758)
70 PF12568 DUF3749: Acetyltransf 98.0 4.3E-05 9.3E-10 58.1 7.6 85 120-219 36-124 (128)
71 KOG4144 Arylalkylamine N-acety 97.9 1.5E-05 3.2E-10 62.2 4.2 64 154-220 97-161 (190)
72 COG4552 Eis Predicted acetyltr 97.7 5.5E-05 1.2E-09 66.6 5.0 60 156-220 68-127 (389)
73 COG2388 Predicted acetyltransf 97.5 0.00028 6.2E-09 51.6 6.1 44 155-198 36-79 (99)
74 COG5628 Predicted acetyltransf 97.5 0.00083 1.8E-08 50.4 7.8 77 128-216 43-119 (143)
75 COG3053 CitC Citrate lyase syn 97.4 0.0013 2.7E-08 56.9 9.0 61 160-223 58-118 (352)
76 COG3375 Uncharacterized conser 97.0 0.016 3.5E-07 48.3 11.5 142 65-229 3-146 (266)
77 COG1243 ELP3 Histone acetyltra 96.9 0.0015 3.3E-08 59.6 5.1 51 167-220 459-509 (515)
78 PF06852 DUF1248: Protein of u 96.8 0.026 5.7E-07 45.9 11.2 107 105-220 30-137 (181)
79 PF13480 Acetyltransf_6: Acety 96.8 0.039 8.4E-07 41.9 11.8 117 64-199 19-135 (142)
80 PF13880 Acetyltransf_13: ESCO 96.8 0.0014 3.1E-08 44.7 3.0 29 159-187 6-34 (70)
81 TIGR03694 exosort_acyl putativ 96.1 0.22 4.9E-06 42.4 13.2 63 155-220 108-198 (241)
82 KOG2535 RNA polymerase II elon 96.1 0.01 2.2E-07 52.6 4.9 50 168-220 497-547 (554)
83 PF04958 AstA: Arginine N-succ 96.0 0.18 3.8E-06 45.1 12.5 144 64-216 1-184 (342)
84 KOG2036 Predicted P-loop ATPas 96.0 0.039 8.5E-07 53.1 8.6 86 157-244 613-747 (1011)
85 PRK10456 arginine succinyltran 95.7 0.055 1.2E-06 48.2 8.0 31 156-186 117-147 (344)
86 PF05301 Mec-17: Touch recepto 95.7 0.025 5.5E-07 42.5 5.0 54 160-216 48-102 (120)
87 COG3882 FkbH Predicted enzyme 95.5 0.049 1.1E-06 50.4 7.1 64 156-219 484-549 (574)
88 PRK14852 hypothetical protein; 95.3 0.14 3E-06 51.7 10.0 83 154-242 117-200 (989)
89 TIGR03827 GNAT_ablB putative b 94.9 0.12 2.7E-06 44.4 7.8 64 174-244 21-84 (266)
90 PF00765 Autoind_synth: Autoin 94.9 0.81 1.8E-05 37.3 12.0 66 154-222 86-157 (182)
91 cd04264 DUF619-NAGS DUF619 dom 94.9 0.19 4.1E-06 36.8 7.4 45 156-205 32-76 (99)
92 cd04265 DUF619-NAGS-U DUF619 d 94.6 0.24 5.2E-06 36.3 7.4 45 156-205 32-76 (99)
93 COG2401 ABC-type ATPase fused 94.4 0.017 3.7E-07 52.7 1.1 63 158-220 241-308 (593)
94 TIGR03243 arg_catab_AOST argin 94.2 0.22 4.8E-06 44.3 7.7 31 156-186 115-145 (335)
95 TIGR03245 arg_AOST_alph argini 94.0 0.32 6.8E-06 43.4 8.3 31 156-186 116-146 (336)
96 TIGR03244 arg_catab_AstA argin 94.0 0.21 4.6E-06 44.4 7.1 30 156-185 115-144 (336)
97 PF01853 MOZ_SAS: MOZ/SAS fami 93.3 0.36 7.8E-06 39.4 6.8 35 158-192 80-114 (188)
98 PRK13834 putative autoinducer 93.0 0.99 2.1E-05 37.6 9.3 66 154-222 95-167 (207)
99 PF01233 NMT: Myristoyl-CoA:pr 92.8 0.86 1.9E-05 36.2 8.1 65 123-192 78-144 (162)
100 PHA01733 hypothetical protein 91.3 0.54 1.2E-05 37.0 5.3 82 128-223 53-135 (153)
101 PLN03238 probable histone acet 91.0 0.73 1.6E-05 40.1 6.3 33 159-191 156-188 (290)
102 cd04266 DUF619-NAGS-FABP DUF61 89.5 2.8 6.2E-05 31.1 7.6 49 156-210 37-87 (108)
103 KOG4601 Uncharacterized conser 89.4 0.61 1.3E-05 39.2 4.4 57 157-216 107-164 (264)
104 KOG3698 Hyaluronoglucosaminida 89.2 0.57 1.2E-05 44.4 4.5 68 164-231 822-889 (891)
105 PLN03239 histone acetyltransfe 88.9 1.1 2.3E-05 40.2 5.8 33 159-191 214-246 (351)
106 COG3916 LasI N-acyl-L-homoseri 88.8 8.6 0.00019 32.0 10.7 65 154-221 94-164 (209)
107 PF04768 DUF619: Protein of un 88.6 2.6 5.7E-05 34.0 7.5 77 127-217 65-143 (170)
108 PTZ00064 histone acetyltransfe 88.0 1.2 2.5E-05 41.7 5.6 33 159-191 385-417 (552)
109 TIGR03019 pepcterm_femAB FemAB 86.1 8.3 0.00018 34.1 10.1 60 163-222 224-283 (330)
110 KOG2747 Histone acetyltransfer 85.5 1.2 2.6E-05 40.4 4.3 33 159-191 261-293 (396)
111 PLN00104 MYST -like histone ac 85.4 1.2 2.6E-05 41.2 4.3 33 159-191 307-339 (450)
112 COG3138 AstA Arginine/ornithin 84.2 2.1 4.5E-05 37.3 4.9 24 158-181 119-142 (336)
113 PF04377 ATE_C: Arginine-tRNA- 83.1 6.2 0.00013 30.3 6.7 38 166-203 70-107 (128)
114 PF12261 T_hemolysin: Thermost 81.1 9.7 0.00021 31.0 7.5 78 154-238 83-171 (179)
115 PRK01305 arginyl-tRNA-protein 79.9 12 0.00026 31.9 8.0 39 165-203 174-212 (240)
116 KOG2696 Histone acetyltransfer 76.8 5.3 0.00011 36.0 5.1 48 157-205 216-263 (403)
117 cd09012 Glo_EDI_BRP_like_24 Th 72.9 7.4 0.00016 28.6 4.5 16 204-219 12-27 (124)
118 PF11090 DUF2833: Protein of u 72.9 13 0.00029 26.4 5.3 43 175-219 41-83 (86)
119 PF02474 NodA: Nodulation prot 72.7 9.8 0.00021 30.7 5.2 56 155-214 82-137 (196)
120 cd03173 DUF619-like DUF619 dom 71.6 36 0.00079 24.8 7.9 49 156-210 31-79 (98)
121 cd08356 Glo_EDI_BRP_like_17 Th 71.0 7.3 0.00016 28.4 4.0 21 204-224 13-33 (113)
122 cd07235 MRD Mitomycin C resist 71.0 11 0.00024 27.4 5.0 26 194-220 3-28 (122)
123 PHA00432 internal virion prote 70.5 9.4 0.0002 29.6 4.5 29 192-220 93-121 (137)
124 KOG2779 N-myristoyl transferas 70.3 13 0.00029 33.4 6.0 86 122-212 134-224 (421)
125 cd08350 BLMT_like BLMT, a bleo 69.4 6.5 0.00014 28.8 3.5 19 204-222 14-32 (120)
126 PHA02769 hypothetical protein; 66.2 5.8 0.00013 29.7 2.5 44 176-221 94-140 (154)
127 PF02100 ODC_AZ: Ornithine dec 65.4 31 0.00068 25.5 6.4 72 166-238 30-105 (108)
128 cd08353 Glo_EDI_BRP_like_7 Thi 63.6 8.1 0.00018 29.1 3.1 28 192-220 4-31 (142)
129 COG5027 SAS2 Histone acetyltra 63.0 4.4 9.4E-05 36.2 1.6 30 159-188 263-292 (395)
130 PF13444 Acetyltransf_5: Acety 61.1 6.3 0.00014 28.5 1.9 25 156-180 76-100 (101)
131 cd08344 MhqB_like_N N-terminal 60.3 18 0.00039 26.0 4.3 29 192-221 3-31 (112)
132 PRK04531 acetylglutamate kinas 58.6 23 0.0005 32.6 5.6 48 157-210 309-356 (398)
133 cd07267 THT_Oxygenase_N N-term 51.4 23 0.00049 25.5 3.6 28 193-221 5-32 (113)
134 PF10566 Glyco_hydro_97: Glyco 49.1 40 0.00087 29.3 5.2 42 178-220 73-125 (273)
135 PF08901 DUF1847: Protein of u 48.2 29 0.00062 27.5 3.8 41 180-220 43-87 (157)
136 cd08358 Glo_EDI_BRP_like_21 Th 48.0 36 0.00079 25.8 4.3 18 203-220 13-31 (127)
137 TIGR02990 ectoine_eutA ectoine 47.6 25 0.00055 29.8 3.8 43 179-221 107-152 (239)
138 cd08354 Glo_EDI_BRP_like_13 Th 47.3 66 0.0014 22.9 5.6 25 195-220 4-29 (122)
139 cd08342 HPPD_N_like N-terminal 44.6 55 0.0012 24.5 4.9 27 194-221 3-30 (136)
140 cd08346 PcpA_N_like N-terminal 44.0 33 0.00071 24.6 3.5 29 192-221 2-31 (126)
141 PF11124 Pho86: Inorganic phos 43.2 2.4E+02 0.0051 25.0 9.2 80 136-219 181-270 (304)
142 cd07253 Glo_EDI_BRP_like_2 Thi 41.6 64 0.0014 22.9 4.8 31 191-222 3-34 (125)
143 COG3607 Predicted lactoylgluta 41.6 41 0.00089 25.7 3.6 17 204-220 15-31 (133)
144 COG5630 ARG2 Acetylglutamate s 41.1 64 0.0014 29.5 5.3 51 155-210 397-448 (495)
145 cd07240 ED_TypeI_classII_N N-t 40.4 85 0.0018 22.1 5.3 28 194-222 5-33 (117)
146 PTZ00129 40S ribosomal protein 39.9 1.3E+02 0.0028 23.7 6.3 46 175-220 73-129 (149)
147 cd08362 BphC5-RrK37_N_like N-t 39.5 35 0.00075 24.5 3.0 31 191-222 3-34 (120)
148 cd08357 Glo_EDI_BRP_like_18 Th 38.4 95 0.0021 22.2 5.3 21 204-224 11-32 (125)
149 cd07252 BphC1-RGP6_N_like N-te 38.3 66 0.0014 23.3 4.4 28 192-220 3-31 (120)
150 TIGR03645 glyox_marine lactoyl 38.2 36 0.00078 26.6 3.1 28 191-219 4-32 (162)
151 PF12681 Glyoxalase_2: Glyoxal 38.1 33 0.00072 24.0 2.7 22 204-225 7-29 (108)
152 PRK00756 acyltransferase NodA; 37.1 84 0.0018 25.3 4.8 46 155-201 82-127 (196)
153 cd08361 PpCmtC_N N-terminal do 37.0 87 0.0019 22.9 4.9 28 193-221 8-36 (124)
154 cd07265 2_3_CTD_N N-terminal d 37.0 41 0.00088 24.4 3.1 29 192-221 5-34 (122)
155 cd07238 Glo_EDI_BRP_like_5 Thi 36.6 38 0.00082 24.0 2.8 16 204-219 12-28 (112)
156 cd08352 Glo_EDI_BRP_like_1 Thi 36.0 53 0.0012 23.3 3.6 29 191-220 3-32 (125)
157 COG3473 Maleate cis-trans isom 35.8 64 0.0014 27.1 4.2 38 183-220 109-149 (238)
158 COG5092 NMT1 N-myristoyl trans 35.6 1.9E+02 0.0042 25.8 7.2 40 153-192 160-199 (451)
159 cd07242 Glo_EDI_BRP_like_6 Thi 35.5 1.2E+02 0.0026 21.8 5.5 28 192-220 2-33 (128)
160 cd07255 Glo_EDI_BRP_like_12 Th 35.3 94 0.002 22.3 4.9 30 193-223 4-34 (125)
161 PF13380 CoA_binding_2: CoA bi 34.6 81 0.0017 23.4 4.4 53 159-220 56-108 (116)
162 cd07266 HPCD_N_class_II N-term 34.4 68 0.0015 23.0 3.9 30 192-222 5-35 (121)
163 PF12953 DUF3842: Domain of un 34.0 70 0.0015 24.6 3.8 45 169-217 6-50 (131)
164 cd07246 Glo_EDI_BRP_like_8 Thi 33.8 69 0.0015 22.7 3.9 24 197-221 7-31 (122)
165 PRK09607 rps11p 30S ribosomal 33.2 2.2E+02 0.0048 21.9 6.5 45 176-220 55-110 (132)
166 TIGR00068 glyox_I lactoylgluta 33.0 41 0.00088 25.7 2.6 30 190-220 16-46 (150)
167 cd07263 Glo_EDI_BRP_like_16 Th 32.8 48 0.001 23.3 2.8 18 204-221 10-28 (119)
168 KOG3014 Protein involved in es 32.5 56 0.0012 28.0 3.4 33 156-188 181-213 (257)
169 TIGR03628 arch_S11P archaeal r 32.4 2.2E+02 0.0047 21.4 6.5 45 176-220 48-103 (114)
170 COG2935 Putative arginyl-tRNA: 31.7 1.2E+02 0.0026 26.0 5.3 47 165-217 181-227 (253)
171 PF00903 Glyoxalase: Glyoxalas 31.2 45 0.00097 23.8 2.5 29 193-222 3-32 (128)
172 PF14696 Glyoxalase_5: Hydroxy 31.2 20 0.00043 27.9 0.5 30 191-221 9-38 (139)
173 cd07262 Glo_EDI_BRP_like_19 Th 31.0 81 0.0018 22.6 3.9 26 194-221 3-33 (123)
174 cd08347 PcpA_C_like C-terminal 30.8 1.2E+02 0.0025 23.6 4.9 31 191-222 1-32 (157)
175 cd07264 Glo_EDI_BRP_like_15 Th 30.2 74 0.0016 22.8 3.5 17 204-220 12-29 (125)
176 PF00411 Ribosomal_S11: Riboso 30.0 2.3E+02 0.0049 20.9 6.2 46 175-220 44-92 (110)
177 COG0375 HybF Zn finger protein 30.0 1.6E+02 0.0034 22.2 5.1 37 174-210 5-47 (115)
178 PF04816 DUF633: Family of unk 29.5 61 0.0013 26.8 3.2 49 174-222 74-124 (205)
179 PRK11478 putative lyase; Provi 29.0 61 0.0013 23.5 2.9 27 192-219 7-34 (129)
180 cd07244 FosA FosA, a Fosfomyci 28.9 1E+02 0.0022 22.3 4.1 29 192-221 2-31 (121)
181 cd08359 Glo_EDI_BRP_like_22 Th 28.7 90 0.0019 22.2 3.7 22 200-221 8-31 (119)
182 PF09390 DUF1999: Protein of u 28.5 2.9E+02 0.0064 21.7 11.1 136 66-219 2-140 (161)
183 COG0346 GloA Lactoylglutathion 28.3 75 0.0016 22.2 3.3 31 192-223 3-34 (138)
184 PRK10150 beta-D-glucuronidase; 28.1 2.4E+02 0.0051 27.3 7.4 70 155-224 288-359 (604)
185 cd07241 Glo_EDI_BRP_like_3 Thi 27.5 86 0.0019 22.3 3.5 25 194-219 4-29 (125)
186 COG2266 GTP:adenosylcobinamide 27.1 1.4E+02 0.0031 24.2 4.7 45 176-221 26-70 (177)
187 cd08355 Glo_EDI_BRP_like_14 Th 27.0 95 0.0021 22.3 3.6 24 197-221 5-29 (122)
188 COG5653 Protein involved in ce 26.8 4.8E+02 0.01 24.1 8.5 40 163-202 300-339 (406)
189 cd08343 ED_TypeI_classII_C C-t 26.7 95 0.0021 22.8 3.6 17 204-220 11-28 (131)
190 cd04263 DUF619-NAGK-FABP DUF61 26.6 2.5E+02 0.0055 20.4 7.5 44 156-204 31-74 (98)
191 cd08349 BLMA_like Bleomycin bi 26.6 1.3E+02 0.0028 20.8 4.3 18 204-221 10-28 (112)
192 cd07243 2_3_CTD_C C-terminal d 26.4 84 0.0018 23.9 3.3 28 192-220 7-35 (143)
193 cd07254 Glo_EDI_BRP_like_20 Th 26.3 1.9E+02 0.0041 20.5 5.2 28 195-222 3-32 (120)
194 cd08348 BphC2-C3-RGP6_C_like T 26.3 1.1E+02 0.0023 22.4 3.9 28 194-222 4-32 (134)
195 cd07237 BphC1-RGP6_C_like C-te 25.8 97 0.0021 23.8 3.6 29 191-220 9-38 (154)
196 cd07249 MMCE Methylmalonyl-CoA 24.7 73 0.0016 22.8 2.6 28 193-221 2-30 (128)
197 cd04182 GT_2_like_f GT_2_like_ 24.3 93 0.002 24.2 3.4 41 176-216 25-65 (186)
198 cd07233 Glyoxalase_I Glyoxalas 24.3 1.1E+02 0.0024 21.7 3.5 25 195-220 4-29 (121)
199 PRK10291 glyoxalase I; Provisi 24.3 68 0.0015 23.5 2.4 17 204-220 8-25 (129)
200 PF04015 DUF362: Domain of unk 24.1 1.6E+02 0.0034 23.9 4.7 45 176-220 21-67 (206)
201 CHL00041 rps11 ribosomal prote 23.8 3.1E+02 0.0068 20.4 6.3 45 176-220 58-105 (116)
202 cd07043 STAS_anti-anti-sigma_f 23.4 2.5E+02 0.0053 19.1 5.4 40 175-217 54-93 (99)
203 cd08345 Fosfomycin_RP Fosfomyc 23.1 98 0.0021 21.7 3.0 18 204-221 10-28 (113)
204 cd06587 Glo_EDI_BRP_like This 22.8 88 0.0019 21.1 2.6 20 203-222 9-29 (112)
205 PF02836 Glyco_hydro_2_C: Glyc 22.1 3.4E+02 0.0075 23.3 6.8 67 157-223 13-81 (298)
206 PLN02300 lactoylglutathione ly 22.0 1.1E+02 0.0024 26.2 3.6 29 191-220 24-53 (286)
207 PRK14968 putative methyltransf 21.4 1.9E+02 0.004 22.6 4.6 44 177-220 128-171 (188)
208 cd08364 FosX FosX, a fosfomyci 21.3 1.2E+02 0.0027 22.3 3.3 29 191-220 4-33 (131)
209 PF12652 CotJB: CotJB protein; 21.2 38 0.00083 23.6 0.4 20 194-213 19-38 (78)
210 cd09011 Glo_EDI_BRP_like_23 Th 21.2 1.1E+02 0.0024 21.9 3.0 25 194-219 5-30 (120)
211 PF11039 DUF2824: Protein of u 21.1 4E+02 0.0087 20.7 7.7 64 158-224 62-126 (151)
212 PF04339 DUF482: Protein of un 20.5 3.2E+02 0.0069 24.9 6.3 62 163-226 105-167 (370)
213 cd07256 HPCD_C_class_II C-term 20.4 1.1E+02 0.0023 23.8 2.9 27 192-219 4-31 (161)
214 cd06588 PhnB_like Escherichia 20.2 1E+02 0.0023 22.7 2.7 26 196-221 4-30 (128)
215 PF12804 NTP_transf_3: MobA-li 20.1 1.2E+02 0.0025 23.2 3.0 44 176-221 23-66 (160)
No 1
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=99.73 E-value=5.6e-17 Score=126.46 Aligned_cols=136 Identities=10% Similarity=0.065 Sum_probs=95.2
Q ss_pred ceEEecCccchhhHHHHHHHHhhhcccCCCccccchhhhhhhHHHHHHHHHHHhcCCCceeEEEEEccccCceeeeeehh
Q 025854 64 SLVVDETTAEDQLWAAACLRVRSFHQFDPDSFGVQDHKKHLAEREFEAMKERIAGKRKEFRTVACINATLPLSQISSVSE 143 (247)
Q Consensus 64 ~v~IR~a~~~D~~~~~a~l~~~~~~~~~p~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~ 143 (247)
+++||+++.+| +..+..+...... ..+.. +...+.+.+.+.. .....+++..++.+ +|++.+..
T Consensus 3 ~~~ir~a~~~D-~~~l~~l~~~~~~----~~~~~--------~~~~~~~~~~l~~-~~~~~~v~~~~~~i--vG~~~~~~ 66 (144)
T PRK10146 3 ACELRPATQYD-TDAVYALICELKQ----AEFDH--------QAFRVGFNANLRD-PNMRYHLALLDGEV--VGMIGLHL 66 (144)
T ss_pred ccEEeeCcHhh-HHHHHHHHHHHhc----ccCCH--------HHHHHHHHHHhcC-CCceEEEEEECCEE--EEEEEEEe
Confidence 48899999988 7777666554321 11111 1112334444442 22333455566666 88877632
Q ss_pred hhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEecc
Q 025854 144 ELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFEND 220 (247)
Q Consensus 144 ~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~ 220 (247)
.. ........++|..++|+|+|||+|+|+.||++++++|++.|+..+.|.+...|..|++||+|+||+..+.
T Consensus 67 ~~-----~~~~~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~~~Gf~~~~~ 138 (144)
T PRK10146 67 QF-----HLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYLREGYEQSHF 138 (144)
T ss_pred cc-----cccccchhheeheeEECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHHHcCCchhhh
Confidence 10 0111222468999999999999999999999999999999999999999999999999999999987644
No 2
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=99.72 E-value=4.9e-16 Score=123.30 Aligned_cols=143 Identities=20% Similarity=0.295 Sum_probs=96.5
Q ss_pred CceEEecCccchhhHHHHHHHHhhhcccCCCccccchhhhhhhHHHHHHHHHHHhcCCCceeEEEEEccccCceeeeeeh
Q 025854 63 SSLVVDETTAEDQLWAAACLRVRSFHQFDPDSFGVQDHKKHLAEREFEAMKERIAGKRKEFRTVACINATLPLSQISSVS 142 (247)
Q Consensus 63 ~~v~IR~a~~~D~~~~~a~l~~~~~~~~~p~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~ 142 (247)
+.++||+++.+| ...+..++.. +..+.......... .+.+...+......+.++++.++++ +|++++.
T Consensus 2 ~~i~lr~~~~~D-~~~~~~~~~~------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~--vG~~~~~ 69 (162)
T PRK10140 2 SEIVIRHAETRD-YEAIRQIHAQ------PEVYHNTLQVPHPS---DHMWQERLADRPGIKQLVACIDGDV--VGHLTID 69 (162)
T ss_pred CccEEEecchhh-HHHHHHHHhC------cccccccccCCCcC---HHHHHHHhhcCCCcEEEEEEECCEE--EEEEEEe
Confidence 358999999988 6666555432 11111110000011 1234445443333445566666666 8888774
Q ss_pred hhhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHH-cCCcEEEEEEecCCHHHHHHHHHCCCEEeccc
Q 025854 143 EELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQG-WGISDLYVHVAFDNEPAKKLYMKSGFIFENDE 221 (247)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~-~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~ 221 (247)
.. ......+.+.+ .++|+|+|||+|||+.|++.+++++++ .|+.++.+.|..+|.+|++||+|+||+..+..
T Consensus 70 ~~------~~~~~~~~~~~-~~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~~y~k~GF~~~g~~ 142 (162)
T PRK10140 70 VQ------QRPRRSHVADF-GICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIKVYKKYGFEIEGTG 142 (162)
T ss_pred cc------cccccceEEEE-EEEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHHHHHHCCCEEEeec
Confidence 22 11111223444 599999999999999999999999988 59999999999999999999999999999886
Q ss_pred ccc
Q 025854 222 PAW 224 (247)
Q Consensus 222 ~~~ 224 (247)
+.+
T Consensus 143 ~~~ 145 (162)
T PRK10140 143 KKY 145 (162)
T ss_pred ccc
Confidence 654
No 3
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=99.68 E-value=1.3e-15 Score=118.93 Aligned_cols=82 Identities=22% Similarity=0.319 Sum_probs=73.2
Q ss_pred CCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEecccccccccccCCcceE
Q 025854 156 FARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFENDEPAWHARFLDRPRRI 235 (247)
Q Consensus 156 ~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~~~~~~~~~~~~~~l 235 (247)
...++|..++|+++|||+|||++|++.+++.++..|++.|.|+|...|.+|.+||+++||+..++...+ |++....+
T Consensus 82 ~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY~sLGF~r~~r~~~Y---Ylng~dA~ 158 (165)
T KOG3139|consen 82 TLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLSALRLYESLGFKRDKRLFRY---YLNGMDAL 158 (165)
T ss_pred cceEEEEEEEechhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccchHHHHHHHhcCceEecceeEE---EECCcceE
Confidence 468999999999999999999999999999999999999999999999999999999999998887665 56656666
Q ss_pred EEEcc
Q 025854 236 LLWIG 240 (247)
Q Consensus 236 ~~~~~ 240 (247)
-|+..
T Consensus 159 rl~L~ 163 (165)
T KOG3139|consen 159 RLKLF 163 (165)
T ss_pred EEEee
Confidence 55543
No 4
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=99.67 E-value=2.7e-15 Score=123.40 Aligned_cols=141 Identities=18% Similarity=0.170 Sum_probs=94.5
Q ss_pred eEEecCccchhhHHHHHHHHhhhcccCCCccccchhhhhhhHHHHHHHHHHHh-cCCCceeEEEE-EccccCceeeeeeh
Q 025854 65 LVVDETTAEDQLWAAACLRVRSFHQFDPDSFGVQDHKKHLAEREFEAMKERIA-GKRKEFRTVAC-INATLPLSQISSVS 142 (247)
Q Consensus 65 v~IR~a~~~D~~~~~a~l~~~~~~~~~p~~f~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~~-~~~~~~~vg~~~~~ 142 (247)
+.||+++++| ...+..+....+.. ..+.............++.+...+. +....+.+++. .++++ +|++.+.
T Consensus 44 ~~lR~~~~~D-~~~l~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~i--iG~i~l~ 117 (191)
T TIGR02382 44 PGARVATETD-IPALRQLASAAFAL---SRFRAPWYAPDDSGRFYAQWVENAVRGTFDHQCLILRDASGDP--RGYVTLR 117 (191)
T ss_pred CcceeCChhh-HHHHHHHHHHHhhc---cccCCCCcCHHHHHHHHHHHHHHHhcCCCCCeEEEEEccCCeE--EEEEEEE
Confidence 6899999999 77777776554322 1111111110011122233333332 22222222222 24445 7877763
Q ss_pred hhhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeccc
Q 025854 143 EELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFENDE 221 (247)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~ 221 (247)
. . ....++|..++|+|+|||+|+|++|++++++++++.|+.+|++.|..+|.+|++||+|+||+.++..
T Consensus 118 ~--------~--~~~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~klGF~~~~~~ 186 (191)
T TIGR02382 118 E--------L--NDTDARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYIRSGANIESTA 186 (191)
T ss_pred e--------c--CCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCccccce
Confidence 1 1 2235789999999999999999999999999999999999999999999999999999999988764
No 5
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=99.65 E-value=3.5e-15 Score=128.96 Aligned_cols=136 Identities=14% Similarity=0.159 Sum_probs=100.1
Q ss_pred CceEEecCccchhhHHHHHHHHhhhcccCCCccccchhhhhhhHHHHHHHHHHHhcCCCceeEEEEEccccCceeeeeeh
Q 025854 63 SSLVVDETTAEDQLWAAACLRVRSFHQFDPDSFGVQDHKKHLAEREFEAMKERIAGKRKEFRTVACINATLPLSQISSVS 142 (247)
Q Consensus 63 ~~v~IR~a~~~D~~~~~a~l~~~~~~~~~p~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~ 142 (247)
..++||+++.+| ...++.+....+..+ +... .. . +.+.+.+. .....+++..++++ +|++.+.
T Consensus 114 ~~~~IR~a~~~D-~~~l~~L~~~v~~~~-~~~~----~~----~---~~l~~~~~--~~~~~~v~~~~g~i--VG~~~~~ 176 (266)
T TIGR03827 114 EGFTLRIATEDD-ADAMAALYRKVFPTY-PFPI----HD----P---AYLLETMK--SNVVYFGVEDGGKI--IALASAE 176 (266)
T ss_pred CceEEEECCHHH-HHHHHHHHHHHhccC-CCCc----cC----H---HHHHHHhc--CCcEEEEEEECCEE--EEEEEEe
Confidence 349999999988 888887776665432 2111 00 0 11222232 22333455666777 8877652
Q ss_pred hhhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEecccc
Q 025854 143 EELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFENDEP 222 (247)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~~ 222 (247)
.......++|..++|+|+|||+|||++||+.+++++++.|+..+++.+...|.++.++|+|+||+..+...
T Consensus 177 ---------~~~~~~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~k~GF~~~G~l~ 247 (266)
T TIGR03827 177 ---------MDPENGNAEMTDFATLPEYRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFARLGYAYGGTLV 247 (266)
T ss_pred ---------cCCCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHHHcCCccccEEe
Confidence 12233468999999999999999999999999999999999999999999999999999999999998876
Q ss_pred cc
Q 025854 223 AW 224 (247)
Q Consensus 223 ~~ 224 (247)
..
T Consensus 248 n~ 249 (266)
T TIGR03827 248 NN 249 (266)
T ss_pred ec
Confidence 43
No 6
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=99.64 E-value=8.9e-15 Score=120.47 Aligned_cols=142 Identities=18% Similarity=0.180 Sum_probs=94.3
Q ss_pred eEEecCccchhhHHHHHHHHhhhcccCCCccccchhhhhhhHHHHHHHHHH-HhcCCCceeEEEEE-ccccCceeeeeeh
Q 025854 65 LVVDETTAEDQLWAAACLRVRSFHQFDPDSFGVQDHKKHLAEREFEAMKER-IAGKRKEFRTVACI-NATLPLSQISSVS 142 (247)
Q Consensus 65 v~IR~a~~~D~~~~~a~l~~~~~~~~~p~~f~~~~~~~~~~~~~~~~l~~~-l~~~~~~~~~~~~~-~~~~~~vg~~~~~ 142 (247)
..||+++.+| ...+..+....+... .+.............++.+... ..+....+.+++.. ++++ +|++.+.
T Consensus 47 ~~iR~a~~~D-~~~i~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~--vG~~~l~ 120 (194)
T PRK10975 47 TGARVATETD-IPALRQLAAQAFAQS---RFRAPWYAPDDSGRFYAQWIENAVRGTFDHQCLLLRDASGQI--QGFVTLR 120 (194)
T ss_pred CCcccCCccc-HHHHHHHHHHHhhhc---cccCccCChhHHHHHHHHHHHHhhccccCCcEEEEEcCCCCE--EEEEEEE
Confidence 5689999988 777777655544321 1111111100111223333322 22222222333332 3344 7877762
Q ss_pred hhhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEecccc
Q 025854 143 EELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFENDEP 222 (247)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~~ 222 (247)
. . ....++|..++|+|+|||+|+|++|++.+++++++.|+.++.+.|..+|.++++||+|+||+.++...
T Consensus 121 ~--------~--~~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~yek~Gf~~~~~~~ 190 (194)
T PRK10975 121 E--------L--NDTDARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYIRSGANIESTAY 190 (194)
T ss_pred e--------c--CCCceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHHCCCeEeEEEe
Confidence 1 1 22357899999999999999999999999999999999999999999999999999999999988764
No 7
>PTZ00330 acetyltransferase; Provisional
Probab=99.62 E-value=1.9e-14 Score=112.46 Aligned_cols=136 Identities=18% Similarity=0.144 Sum_probs=87.3
Q ss_pred ceEEecCccchhhHHHHHHHHhhhcccCCCccccchhhhhhhHHHHHHHHHHHhcCCCc-eeEEEEEccccCceeeeeeh
Q 025854 64 SLVVDETTAEDQLWAAACLRVRSFHQFDPDSFGVQDHKKHLAEREFEAMKERIAGKRKE-FRTVACINATLPLSQISSVS 142 (247)
Q Consensus 64 ~v~IR~a~~~D~~~~~a~l~~~~~~~~~p~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~vg~~~~~ 142 (247)
+++||+++.+| +..+..+...... ...+ ..+..+.+.......... +.+++..++++ +|++.+.
T Consensus 6 ~~~ir~~~~~D-~~~i~~l~~~~~~---~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--vG~~~~~ 70 (147)
T PTZ00330 6 SLELRDLEEGD-LGSVLELLSHLTS---APAL---------SQEELEQIAARRRLAGVVTRVFVHSPTQRI--VGTASLF 70 (147)
T ss_pred eEEEEEccccc-HHHHHHHHHHhcC---CCcc---------chhHHHHHHHHHhcCCCceEEEEEeCCCEE--EEEEEEE
Confidence 48999999999 7776665433221 1111 111222232222211211 22222234555 7877763
Q ss_pred hhhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeccc
Q 025854 143 EELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFENDE 221 (247)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~ 221 (247)
.. .. ........++|..++|+|+|||+|||++|++.+++++++.|+..+.+.+ |.+|++||+|+||+.....
T Consensus 71 ~~---~~-~~~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~---n~~a~~~y~k~GF~~~~~~ 142 (147)
T PTZ00330 71 VE---PK-FTRGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDC---TEDMVAFYKKLGFRACERQ 142 (147)
T ss_pred ec---cc-cccCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEec---ChHHHHHHHHCCCEEeceE
Confidence 21 00 0112234679999999999999999999999999999999998887764 7899999999999987643
No 8
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=99.62 E-value=1.3e-14 Score=114.50 Aligned_cols=140 Identities=24% Similarity=0.261 Sum_probs=93.0
Q ss_pred EecCccchhhHHHHHHHHhhhcccCCCccccchhhhhhhHHHHHHHHHHHhcCCCceeEEEEE-ccccCceeeeeehhhh
Q 025854 67 VDETTAEDQLWAAACLRVRSFHQFDPDSFGVQDHKKHLAEREFEAMKERIAGKRKEFRTVACI-NATLPLSQISSVSEEL 145 (247)
Q Consensus 67 IR~a~~~D~~~~~a~l~~~~~~~~~p~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~vg~~~~~~~~ 145 (247)
||+++.+| ...+..+....... ..+...... ...+..+.+.+.+........+++.. ++.+ +|++.+..
T Consensus 1 IR~~~~~D-~~~i~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~i--iG~~~~~~-- 70 (155)
T PF13420_consen 1 IRPATEED-LEEILKLYNEPRHE---YFFTFEYPE--DSEESFERWIESIIDSSKQRLFLVAEEDGKI--IGYVSLRD-- 70 (155)
T ss_dssp EEE--GGG-HHHHHHHHHHHHHH---TSSSSCSSH--S-HHHHHHHHHHHHHHHTTEEEEEEECTTEE--EEEEEEEE--
T ss_pred CCCCcHHH-HHHHHHHHhhhhhc---ceeEecCCC--CCHHHHHHHHHHhcccCCCcEEEEEEcCCcE--EEEEEEEe--
Confidence 79999999 66655554332211 111111111 23334445554442123344555565 7777 88887742
Q ss_pred hhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHH-HHcCCcEEEEEEecCCHHHHHHHHHCCCEEeccccc
Q 025854 146 CAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVA-QGWGISDLYVHVAFDNEPAKKLYMKSGFIFENDEPA 223 (247)
Q Consensus 146 ~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a-~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~~~ 223 (247)
.....+.+++. ++|.|+||++|+|+.|++.++++| ++.|++++.+.|...|+++++||+++||+.++..+.
T Consensus 71 ------~~~~~~~~~~~-~~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~~~~ 142 (155)
T PF13420_consen 71 ------IDPYNHTAELS-IYVSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYKKLGFEEEGELKD 142 (155)
T ss_dssp ------SSSGTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHHHTTEEEEEEEEE
T ss_pred ------eeccCCEEEEe-eEEChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHHhCCCEEEEEEec
Confidence 22344566665 888899999999999999999999 899999999999999999999999999999998765
No 9
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=99.61 E-value=2.3e-14 Score=110.72 Aligned_cols=142 Identities=15% Similarity=0.008 Sum_probs=93.0
Q ss_pred ceEEecCccchhhHHHHHHHHhhhcccCCCccccchhhhhhhHHHHHHHHHHHhcCCCceeE-EEEEcc-ccCceeeeee
Q 025854 64 SLVVDETTAEDQLWAAACLRVRSFHQFDPDSFGVQDHKKHLAEREFEAMKERIAGKRKEFRT-VACINA-TLPLSQISSV 141 (247)
Q Consensus 64 ~v~IR~a~~~D~~~~~a~l~~~~~~~~~p~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~-~~~~vg~~~~ 141 (247)
.++||.++++|.-.....++-.+-.+.-.+.+. .....+....-.+++.+.. ++.+.. ....+|++.+
T Consensus 3 ~~~IR~at~~D~~~i~rLikela~Fek~~~~v~----------~te~~l~~~~F~d~~~~~~~v~~ie~~~~~~aGf~~y 72 (163)
T KOG3216|consen 3 NIRIRLATPKDCEDILRLIKELAEFEKLEDQVE----------ATEENLARDGFIDPPFKHWLVAAIETSGEVVAGFALY 72 (163)
T ss_pred ceEEEecCcccHHHHHHHHHHHHHHHHhccchh----------hchhhhhhhhccCCCccEEEEEEEecCCCceeEEeee
Confidence 589999999994444444443332221111111 1112222222122333332 233311 1112676665
Q ss_pred hhhhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEecc
Q 025854 142 SEELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFEND 220 (247)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~ 220 (247)
.... .........||.+|+|.|.|||+|+|+.|++.+-+.|.+.|+.++++.|..-|.+|+.||+|.|++....
T Consensus 73 f~~y-----stW~~k~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vldwN~rAi~lY~k~gaq~l~~ 146 (163)
T KOG3216|consen 73 FNNY-----STWLGKQGIYLEDLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLDWNHRAILLYEKVGAQDLKE 146 (163)
T ss_pred eccc-----ccccccceEEEEeeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEeccchhHHHHHHHhCccccce
Confidence 3221 2344556889999999999999999999999999999999999999999999999999999999997665
No 10
>PRK03624 putative acetyltransferase; Provisional
Probab=99.60 E-value=3.7e-14 Score=109.13 Aligned_cols=129 Identities=15% Similarity=0.166 Sum_probs=89.5
Q ss_pred ceEEecCccchhhHHHHHHHHhhhcccCCCccccchhhhhhhHHHHHHHHHHHhcCCCceeEEEEEccccCceeeeeehh
Q 025854 64 SLVVDETTAEDQLWAAACLRVRSFHQFDPDSFGVQDHKKHLAEREFEAMKERIAGKRKEFRTVACINATLPLSQISSVSE 143 (247)
Q Consensus 64 ~v~IR~a~~~D~~~~~a~l~~~~~~~~~p~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~ 143 (247)
.+.||+++.+| ...+..+.... . ......+ ....+.+.+.. .....+++..++.+ +|++.+..
T Consensus 2 ~~~ir~~~~~d-~~~i~~l~~~~--~-----~~~~~~~------~~~~~~~~~~~-~~~~~~v~~~~~~~--vG~~~~~~ 64 (140)
T PRK03624 2 AMEIRVFRQAD-FEAVIALWERC--D-----LTRPWND------PEMDIERKLNH-DPSLFLVAEVGGEV--VGTVMGGY 64 (140)
T ss_pred ceEEEEccccc-HHHHHHHHHhc--C-----CCcchhh------HHHHHHHHhcC-CCceEEEEEcCCcE--EEEEEeec
Confidence 37899999998 66655543322 1 1001100 11122333332 33344445555555 77766521
Q ss_pred hhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEecc
Q 025854 144 ELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFEND 220 (247)
Q Consensus 144 ~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~ 220 (247)
....+++..++|+|+|||+|+|++|++.+++++++.|+..+.+.|..+|..+++||+|+||+..+.
T Consensus 65 -----------~~~~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~k~GF~~~~~ 130 (140)
T PRK03624 65 -----------DGHRGWAYYLAVHPDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYEALGYEEQDR 130 (140)
T ss_pred -----------cCCCceEEEEEECHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHcCCccccE
Confidence 123467888999999999999999999999999999999999999999999999999999998664
No 11
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=99.59 E-value=5.6e-14 Score=110.59 Aligned_cols=62 Identities=19% Similarity=0.278 Sum_probs=57.1
Q ss_pred CCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEecc
Q 025854 156 FARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFEND 220 (247)
Q Consensus 156 ~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~ 220 (247)
...++|..++|+|+|||+|||+.|++.++++|++.|+.++.+.|..+|. +||+|+||+.++.
T Consensus 83 ~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~---~~y~k~GF~~~g~ 144 (150)
T PLN02706 83 GKVGHIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENK---AFYEKCGYVRKEI 144 (150)
T ss_pred CcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccH---HHHHHCcCEEehh
Confidence 3467899999999999999999999999999999999999999999995 5999999998764
No 12
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.59 E-value=9.9e-15 Score=103.03 Aligned_cols=61 Identities=30% Similarity=0.515 Sum_probs=59.3
Q ss_pred CCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCE
Q 025854 156 FARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFI 216 (247)
Q Consensus 156 ~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~ 216 (247)
...++|..++|+|+|||+|||+.|++.+++.+++.|+..+.+.|..+|..+++||+|+||+
T Consensus 23 ~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k~Gf~ 83 (83)
T PF00583_consen 23 GNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEKLGFE 83 (83)
T ss_dssp TTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHHTTEE
T ss_pred CCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHHcCCC
Confidence 5789999999999999999999999999999999999999999999999999999999996
No 13
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=99.58 E-value=1.3e-14 Score=116.76 Aligned_cols=68 Identities=22% Similarity=0.316 Sum_probs=64.1
Q ss_pred CeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCC-cEEEEEEecCCHHHHHHHHHCCCEEecccccc
Q 025854 157 ARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGI-SDLYVHVAFDNEPAKKLYMKSGFIFENDEPAW 224 (247)
Q Consensus 157 ~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~-~~i~L~v~~~N~~A~~fY~k~GF~~~~~~~~~ 224 (247)
..++|..|+|+|+|||+|||++|++++++.+++.|. ..+.|+|..+|.+|++||+|+||+..+....+
T Consensus 90 ~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~~~GF~~~~~~~~y 158 (177)
T COG0456 90 HEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYRKLGFEVVKIRKNY 158 (177)
T ss_pred CccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHHHcCCEEEeeehhh
Confidence 478999999999999999999999999999999987 89999999999999999999999999888754
No 14
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=99.58 E-value=5.3e-14 Score=110.29 Aligned_cols=82 Identities=23% Similarity=0.295 Sum_probs=67.0
Q ss_pred eEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEecccccccccccCCcceEEE
Q 025854 158 RAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFENDEPAWHARFLDRPRRILL 237 (247)
Q Consensus 158 ~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~~~~~~~~~~~~~~l~~ 237 (247)
.+++..++|+|+|||+|+|+.|++.+++.+++.|+..+.+.|...|.++.+||+|+||+..+..+.+....-+-...++|
T Consensus 63 ~~~~~~i~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~~~~~~~d~~~~ 142 (146)
T PRK09491 63 EATLFNIAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYESLGFNEVTIRRNYYPTADGREDAIIM 142 (146)
T ss_pred ceEEEEEEECHHHccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHHHcCCEEeeeeeccccCCCCceeEEEE
Confidence 45688899999999999999999999999999999999999999999999999999999887765542111122334555
Q ss_pred Ec
Q 025854 238 WI 239 (247)
Q Consensus 238 ~~ 239 (247)
.+
T Consensus 143 ~~ 144 (146)
T PRK09491 143 AL 144 (146)
T ss_pred ec
Confidence 54
No 15
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.58 E-value=3.5e-14 Score=134.00 Aligned_cols=157 Identities=18% Similarity=0.070 Sum_probs=105.3
Q ss_pred CccccccccccceecccccccCCCCCccccccCCCceEEecCccchhhHHHHHHHHhhhcccCCCccccchhhhhhhHHH
Q 025854 29 FSAFTLSLRFPLRPINLLHVCTPPHQEDSLSIDKSSLVVDETTAEDQLWAAACLRVRSFHQFDPDSFGVQDHKKHLAERE 108 (247)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IR~a~~~D~~~~~a~l~~~~~~~~~p~~f~~~~~~~~~~~~~ 108 (247)
|-||-|-.|..+........ .+.+ +.||++...+|+.++..|....... +. . ..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~-~~~g-----------~~IR~~~~~~D~~~I~~L~~~~~~~--p~----~-~~------- 112 (547)
T TIGR03103 59 FLDPSHTYRLWLTQYRPAAR-TPRG-----------FTVRRLRGPADVDAINRLYAARGMV--PV----R-VD------- 112 (547)
T ss_pred ccCchhceEeccccCCcCcC-CCCC-----------cEEEeCCChhHHHHHHHHHHhcCCC--CC----C-HH-------
Confidence 77888878888777533333 3333 9999985444488877776543211 10 0 11
Q ss_pred HHHHHHHHhcCCCceeEEEEE--ccccCceeeeeehhhhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHH
Q 025854 109 FEAMKERIAGKRKEFRTVACI--NATLPLSQISSVSEELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLV 186 (247)
Q Consensus 109 ~~~l~~~l~~~~~~~~~~~~~--~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~ 186 (247)
.+...+.. .....+++.. ++++ +|++...... . ...+....++|..|+|+|+|||+|||++||++++++
T Consensus 113 --~~~~~~~~-~~~~~~vA~~~~~g~I--VG~~~~~~~~---~-~~~d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~ 183 (547)
T TIGR03103 113 --FVLDHRHS-RAITYLVAEDEASGAI--IGTVMGVDHR---K-AFNDPEHGSSLWCLAVDPQAAHPGVGEALVRALAEH 183 (547)
T ss_pred --HHHHHhcC-CCceEEEEEECCCCeE--EEEEEEEecc---c-cccCCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHH
Confidence 11112222 2233334443 3555 7876542110 0 112233457899999999999999999999999999
Q ss_pred HHHcCCcEEEEEEecCCHHHHHHHHHCCCEEecc
Q 025854 187 AQGWGISDLYVHVAFDNEPAKKLYMKSGFIFEND 220 (247)
Q Consensus 187 a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~ 220 (247)
+++.|+..++|.|..+|..|++||+|+||+.+..
T Consensus 184 a~~~G~~~i~L~V~~~N~~Ai~fY~klGf~~~~~ 217 (547)
T TIGR03103 184 FQSRGCAYMDLSVMHDNEQAIALYEKLGFRRIPV 217 (547)
T ss_pred HHHCCCCEEEEEEcCCCHHHHHHHHHCCCEEeeE
Confidence 9999999999999999999999999999997654
No 16
>PHA01807 hypothetical protein
Probab=99.58 E-value=5.6e-14 Score=111.51 Aligned_cols=128 Identities=12% Similarity=0.040 Sum_probs=91.2
Q ss_pred CccchhhHHHHHHHHhhhcccCCCc--cccchhhhhhhHHHHHHHHHHHhcCCCceeEEEEEccccCceeeeeehhhhhh
Q 025854 70 TTAEDQLWAAACLRVRSFHQFDPDS--FGVQDHKKHLAEREFEAMKERIAGKRKEFRTVACINATLPLSQISSVSEELCA 147 (247)
Q Consensus 70 a~~~D~~~~~a~l~~~~~~~~~p~~--f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~ 147 (247)
|..+| ......|++.++.++ |+. |.. . ++..+.+.+.+.+ ...+.++++.++++ +|++.+...
T Consensus 9 ~~~~d-~~~~~~l~l~~l~e~-p~~~~w~s-~------ee~~~~~~~~~~~-~~~~~lva~~dg~l--vG~~~l~~~--- 73 (153)
T PHA01807 9 AKAGT-PSELQGLCWLAIQEL-EEFTLFRS-K------EEALERILDSTES-NDRTELLVFRDGKL--AGIAVLVFE--- 73 (153)
T ss_pred hhhCC-HHHHHHHHHHHHHhC-ccCCCCCC-h------HHHHHHHHHHhhC-CCceEEEEEECCEE--EEEEEEEcC---
Confidence 45566 888888899998884 543 221 1 2222334433443 34555666677777 888877322
Q ss_pred hhccCCCCCCeEE---EEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEecc
Q 025854 148 ECKGIGGDFARAY---LSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFEND 220 (247)
Q Consensus 148 ~~~~~~~~~~~~~---I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~ 220 (247)
...+.+. +..|+|+|+|||+|||++||+.++++|++.|+..+.|+|..+|.+|++||++ |++.+.
T Consensus 74 ------~~~~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~y~~--~~~~~~ 141 (153)
T PHA01807 74 ------DDPHVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREGEGRYTIHYRR--VKPYGQ 141 (153)
T ss_pred ------CCcceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHHh--cCccCC
Confidence 1222334 3457999999999999999999999999999999999999999999999998 444443
No 17
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.57 E-value=1.2e-13 Score=120.47 Aligned_cols=65 Identities=25% Similarity=0.267 Sum_probs=60.5
Q ss_pred CeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeccc
Q 025854 157 ARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFENDE 221 (247)
Q Consensus 157 ~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~ 221 (247)
..++|..++|+|+|||+|||++|++++++++++.|+..+.+.|...|.+|++||+|+||+..+..
T Consensus 225 ~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~y~k~GF~~~~~~ 289 (292)
T TIGR03448 225 ALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRTYEKLGFTVAEVD 289 (292)
T ss_pred ceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHHHHcCCEEcccc
Confidence 35788889999999999999999999999999999999999999999999999999999987654
No 18
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=99.55 E-value=8.9e-14 Score=110.92 Aligned_cols=66 Identities=12% Similarity=0.066 Sum_probs=60.3
Q ss_pred CCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEecc
Q 025854 155 DFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFEND 220 (247)
Q Consensus 155 ~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~ 220 (247)
.....++..++|+|+|||+|||++|++.+++++++.++..+.+.|..+|.+|++||+|+||+....
T Consensus 63 ~~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~k~G~~~~~~ 128 (157)
T TIGR02406 63 RPDVLFVWQVAVDPRARGKGLARRLLEALLERVACERVRHLETTITPDNQASRALFKALARRRGVH 128 (157)
T ss_pred CCCeEEEEEEEEChHhccCcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHHHhCcccCCC
Confidence 344688999999999999999999999999999999999999999999999999999999986443
No 19
>PRK09831 putative acyltransferase; Provisional
Probab=99.54 E-value=6.4e-14 Score=110.23 Aligned_cols=128 Identities=17% Similarity=0.207 Sum_probs=84.7
Q ss_pred eEEecCccchhhHHHHHHHHhhhcccCCCccccchhhhhhhHHHHHHHHHHHhcCCCceeEEEEEccccCceeeeeehhh
Q 025854 65 LVVDETTAEDQLWAAACLRVRSFHQFDPDSFGVQDHKKHLAEREFEAMKERIAGKRKEFRTVACINATLPLSQISSVSEE 144 (247)
Q Consensus 65 v~IR~a~~~D~~~~~a~l~~~~~~~~~p~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~ 144 (247)
+.||+++.+| ...+..+....+.+.....+.......+ .....+.+...+.. ...++++.++++ +|++.+.
T Consensus 1 ~~ir~a~~~D-~~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~v~~~~~~i--iG~~~~~-- 71 (147)
T PRK09831 1 IQIRNYQPGD-FQQLCAIFIRAVTMTASQHYSPQQIAAW-AQIDESRWKEKLAK---SQVRVAVINAQP--VGFITCI-- 71 (147)
T ss_pred CccccCChhh-HHHHHHHHHHHHHHhhhhcCCHHHHHhc-cCCCHHHHHHHHhc---CceEEEEECCEE--EEEEEeh--
Confidence 3689999988 8888888776654421212221111111 11112234444442 223455566666 7876651
Q ss_pred hhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEecccc
Q 025854 145 LCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFENDEP 222 (247)
Q Consensus 145 ~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~~ 222 (247)
..++..++|+|+|||+|||++||+++++.+++ +.|.. |..|++||+|+||+.++..+
T Consensus 72 -------------~~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-------l~v~~-~~~a~~~Y~k~Gf~~~g~~~ 128 (147)
T PRK09831 72 -------------EHYIDMLFVDPEYTRRGVASALLKPLIKSESE-------LTVDA-SITAKPFFERYGFQTVKQQR 128 (147)
T ss_pred -------------hceeeeEEECHHHcCCCHHHHHHHHHHHHhhh-------eEeec-chhhHHHHHHCCCEEeeccc
Confidence 14688899999999999999999999998765 34433 57899999999999999875
No 20
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=99.53 E-value=6.3e-13 Score=109.21 Aligned_cols=155 Identities=15% Similarity=0.205 Sum_probs=95.7
Q ss_pred ccccCCCceEEecCccchhhHHHHHHHHh--hhc-ccCCCccccchhhhhhhHHHHHHHHHHHhcCCCceeEEEEE--cc
Q 025854 57 SLSIDKSSLVVDETTAEDQLWAAACLRVR--SFH-QFDPDSFGVQDHKKHLAEREFEAMKERIAGKRKEFRTVACI--NA 131 (247)
Q Consensus 57 ~~~~~~~~v~IR~a~~~D~~~~~a~l~~~--~~~-~~~p~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--~~ 131 (247)
.+.+.+..++||++..+| ...+..+... .+. .+.+. ...........+.....+..... ....+.+++.. .+
T Consensus 10 ~~~l~t~rl~LR~~~~~D-a~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~ 86 (194)
T PRK10809 10 KVRLTTDRLVVRLVHERD-AWRLADYYAENRHFLKPWEPV-RDESHCYPSGWQARLGMINEFHK-QGSAFYFALLDPDEK 86 (194)
T ss_pred ceeeccCcEEEEeCCHHH-HHHHHHHHHhCHHhccCCCCC-CcccccCHHHHHHHHHHHHHHHh-cCcEEEEEEEECCCC
Confidence 356778889999999999 5554444332 111 11110 00000000000111122222222 23333344443 23
Q ss_pred ccCceeeeeehhhhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHH-cCCcEEEEEEecCCHHHHHHH
Q 025854 132 TLPLSQISSVSEELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQG-WGISDLYVHVAFDNEPAKKLY 210 (247)
Q Consensus 132 ~~~~vg~~~~~~~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~-~g~~~i~L~v~~~N~~A~~fY 210 (247)
++ +|.+++... .....+.++| .++|+|+|||+|+|+.+++.+++++.+ .|+++|.+.|..+|.+|+++|
T Consensus 87 ~~--iG~i~l~~~-------~~~~~~~~ei-g~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l~ 156 (194)
T PRK10809 87 EI--IGVANFSNV-------VRGSFHACYL-GYSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDLL 156 (194)
T ss_pred eE--EEEEEEEee-------cCCCeeeEEE-EEEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHHH
Confidence 44 787776321 1111233555 588999999999999999999999987 599999999999999999999
Q ss_pred HHCCCEEecccccc
Q 025854 211 MKSGFIFENDEPAW 224 (247)
Q Consensus 211 ~k~GF~~~~~~~~~ 224 (247)
+|+||+.++.....
T Consensus 157 ek~Gf~~~g~~~~~ 170 (194)
T PRK10809 157 ARLGFEKEGYAKDY 170 (194)
T ss_pred HHCCCcEEeeeccc
Confidence 99999998876644
No 21
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=99.52 E-value=4.2e-13 Score=105.88 Aligned_cols=141 Identities=18% Similarity=0.120 Sum_probs=90.8
Q ss_pred EecCc-cchhhHHHHHHHHhhhcccCCCccccchhhhhhhHHHHHHHHHHHhcCCCceeEEEEEccccCceeeeeehhhh
Q 025854 67 VDETT-AEDQLWAAACLRVRSFHQFDPDSFGVQDHKKHLAEREFEAMKERIAGKRKEFRTVACINATLPLSQISSVSEEL 145 (247)
Q Consensus 67 IR~a~-~~D~~~~~a~l~~~~~~~~~p~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~ 145 (247)
+|+++ .+| ++.+..+.-..... .+.... ......+.+.+.+...+....++++.+++. +|++.+...
T Consensus 1 ~R~a~~~~D-l~~i~~w~~~~~~~----~~~~~~----~~~~~~~~~~~~l~~~~~~~~~v~~~dg~~--~g~~~~~~~- 68 (152)
T PF13523_consen 1 LRPATTPDD-LPLILQWLNQPHVR----EFWDQD----PSQEWVEEYPEQLEADPGHHPYVAEDDGEP--IGYFEIYWP- 68 (152)
T ss_dssp EEE---GGG-HHHHHHHHTSHHHH----CCH-CC----CTHHHHHHHHHHHCHTTTEEEEEEEETTEE--EEEEEEEEG-
T ss_pred CeeCccHHH-HHHHHHHHHhHHHH----HHccCC----CCHHHHHHHHhhhcccCCceEEEEEECCEE--EEEEEEecc-
Confidence 68899 777 76655544332111 111111 111233445555543445556677788877 887765211
Q ss_pred hhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHc-CCcEEEEEEecCCHHHHHHHHHCCCEEecccc
Q 025854 146 CAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGW-GISDLYVHVAFDNEPAKKLYMKSGFIFENDEP 222 (247)
Q Consensus 146 ~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~-g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~~ 222 (247)
.. ..........+..++|+|+|||+|+|+.+++.+++.+.+. ++..+.+.|..+|.+++++|+|+||+.+++..
T Consensus 69 -~~--~~~~~~~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~~~~~~~~k~GF~~~g~~~ 143 (152)
T PF13523_consen 69 -DE--DYDADDGDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNTRAIRLYEKAGFRKVGEFE 143 (152)
T ss_dssp -GG--SS---TTEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-HHHHHHHHHTT-EEEEEEE
T ss_pred -cc--cccCCCCEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCHHHHHHHHHcCCEEeeEEE
Confidence 00 1111445667888899999999999999999999999887 89999999999999999999999999999864
No 22
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=99.51 E-value=2.6e-13 Score=101.81 Aligned_cols=116 Identities=22% Similarity=0.262 Sum_probs=77.5
Q ss_pred hHHHHHHHHhhhcccCCCccccchhhhhhhHHHHHHHHHHHhcCCCceeEEEEEccccCceeeeeehhhhhhhhccCCCC
Q 025854 76 LWAAACLRVRSFHQFDPDSFGVQDHKKHLAEREFEAMKERIAGKRKEFRTVACINATLPLSQISSVSEELCAECKGIGGD 155 (247)
Q Consensus 76 ~~~~a~l~~~~~~~~~p~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~ 155 (247)
+.++..|....+.+. +..........+ ....+.+.+.+.. .....+++..++++ +|++.+.
T Consensus 2 ~~~i~~l~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~v~~~~~~i--vG~~~~~------------- 62 (117)
T PF13673_consen 2 IPAIAELYREAWQEN-YWDYGPEQIDAW--RYSPEDLEEYLEE-GSHTIFVAEEGGEI--VGFAWLE------------- 62 (117)
T ss_dssp HHHHHHHHHHHHHHH-TTTTSHHHHHHH--HSSHHHHHHHHCT-CCCEEEEEEETTEE--EEEEEEE-------------
T ss_pred HHHHHHHHHHHHHHh-ccCCCHHHHHHH--hcCHHHHHHHHHh-cCCEEEEEEECCEE--EEEEEEc-------------
Confidence 667777777666552 211121111111 2234455555553 33445566677777 8888762
Q ss_pred CCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCC
Q 025854 156 FARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGF 215 (247)
Q Consensus 156 ~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF 215 (247)
..+.|..++|+|+|||+|||++|++.+++.+++ |+..+.+. .|..|.+||+++||
T Consensus 63 -~~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~---~~~~a~~~y~~~GF 117 (117)
T PF13673_consen 63 -PDGEISHLYVLPEYRGRGIGRALLDAAEKEAKD-GIRRLTVE---ANERARRFYRKLGF 117 (117)
T ss_dssp -TCEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTT-TCEEEEEE---C-HHHHHHHHHTT-
T ss_pred -CCCeEEEEEEChhhcCCcHHHHHHHHHHHHHHc-CCcEEEEE---eCHHHHHHHHhCCC
Confidence 234599999999999999999999999999977 88877766 88999999999998
No 23
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.50 E-value=1.1e-12 Score=104.89 Aligned_cols=162 Identities=17% Similarity=0.146 Sum_probs=103.6
Q ss_pred eEEecCccchhhHHHHHHHHhhhcccCCCccccchhhhhhhHHHHHHHHHHHhcCCCceeEEEE-Ec-cccCceeeeeeh
Q 025854 65 LVVDETTAEDQLWAAACLRVRSFHQFDPDSFGVQDHKKHLAEREFEAMKERIAGKRKEFRTVAC-IN-ATLPLSQISSVS 142 (247)
Q Consensus 65 v~IR~a~~~D~~~~~a~l~~~~~~~~~p~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~-~~~~~vg~~~~~ 142 (247)
++||+++.+| +.++..+--..... ....| +.....-+.+.++..... ..+|..++. .. +++ +|++.+.
T Consensus 2 ~~ir~~~~~D-l~~I~~IY~~~v~~-~~a~~----e~~~~~~~~~~~~~~~~~--~~g~p~~V~~~~~g~v--~G~a~~~ 71 (169)
T COG1247 2 MEIRPATAAD-LEAILEIYNGAVEN-TAATF----EEDPVSLEERAAWFSGRT--RDGYPVVVAEEEDGKV--LGYASAG 71 (169)
T ss_pred cEEecChHHh-HHHHHHHHHHhhhc-ceEEE----eccCCCHHHHHHHHHhcc--cCCceEEEEEcCCCeE--EEEEEee
Confidence 7899999999 77766553332221 11111 111112223333333332 223443333 33 556 7777763
Q ss_pred hhhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEecccc
Q 025854 143 EELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFENDEP 222 (247)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~~ 222 (247)
.- ...+.-+...-..++|+|++||+|+|++|++++++.+.+.|+..+.-.+..+|.++++|.+++||+..+..+
T Consensus 72 ~f------r~r~ay~~tve~SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I~~~n~aSi~lh~~~GF~~~G~~~ 145 (169)
T COG1247 72 PF------RERPAYRHTVELSIYLDPAARGKGLGKKLLQALITEARALGVRELVAGIESDNLASIALHEKLGFEEVGTFP 145 (169)
T ss_pred ec------cCccccceEEEEEEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEEcCCCcHhHHHHHHCCCEEecccc
Confidence 21 111222233445799999999999999999999999999999999999999999999999999999999987
Q ss_pred cccccccCC-cceEEEEccCCC
Q 025854 223 AWHARFLDR-PRRILLWIGLPG 243 (247)
Q Consensus 223 ~~~~~~~~~-~~~l~~~~~l~~ 243 (247)
.... .+|+ -..++|.+.|..
T Consensus 146 ~vg~-k~g~wld~~~~~~~l~~ 166 (169)
T COG1247 146 EVGD-KFGRWLDLVLMQLLLEE 166 (169)
T ss_pred cccc-ccceEEeeeeeehhhcc
Confidence 6532 2332 244666666544
No 24
>PHA00673 acetyltransferase domain containing protein
Probab=99.50 E-value=4.6e-13 Score=105.65 Aligned_cols=100 Identities=13% Similarity=0.088 Sum_probs=77.4
Q ss_pred HHhcCCCceeEEEEEccccCceeeeeehhhhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcE
Q 025854 115 RIAGKRKEFRTVACINATLPLSQISSVSEELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISD 194 (247)
Q Consensus 115 ~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~ 194 (247)
.+..++....++++.++++ ||++.+... . .........++|.+|+|+|++||+|||++||+.++++|+++||..
T Consensus 48 ai~~dp~~~llVa~~~g~v--VG~~~l~~~---p-~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~ 121 (154)
T PHA00673 48 GMEAAGVAHFLGVFRGEEL--VGFACLLVT---P-VPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALARDLGATG 121 (154)
T ss_pred HHHhCCCcEEEEEEECCEE--EEEEEEEEe---c-CCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCE
Confidence 4444566667777777777 887766322 0 022334567899999999999999999999999999999999999
Q ss_pred EEEEEecCCHHHHHHHHHCCCEEeccc
Q 025854 195 LYVHVAFDNEPAKKLYMKSGFIFENDE 221 (247)
Q Consensus 195 i~L~v~~~N~~A~~fY~k~GF~~~~~~ 221 (247)
+++...+. ...+.||.++|++.+.+.
T Consensus 122 lyis~~p~-~~tv~fy~~~g~~~~~~~ 147 (154)
T PHA00673 122 LYVSGPTE-GRLVQLLPAAGYRETNRT 147 (154)
T ss_pred EEEecCCC-ccchHHHHhCCchhhchh
Confidence 99976543 557999999999987653
No 25
>PRK07922 N-acetylglutamate synthase; Validated
Probab=99.48 E-value=1.1e-12 Score=106.00 Aligned_cols=124 Identities=17% Similarity=0.181 Sum_probs=82.4
Q ss_pred CceEEecCccchhhHHHHHHHHhhhcccCCCccccchhhhhhhHHHHHHHHHHHhcCCCceeEEEE-EccccCceeeeee
Q 025854 63 SSLVVDETTAEDQLWAAACLRVRSFHQFDPDSFGVQDHKKHLAEREFEAMKERIAGKRKEFRTVAC-INATLPLSQISSV 141 (247)
Q Consensus 63 ~~v~IR~a~~~D~~~~~a~l~~~~~~~~~p~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~vg~~~~ 141 (247)
++++||+++.+| .+.+..+.-. +.+ +..... ..... .+.. . ...+++. .++++ +|++.+
T Consensus 4 ~~i~iR~a~~~D-~~~i~~L~~~-~~~---~~~~~~--------~~~~~---~~~~-~-~~~~va~~~~~~i--iG~~~~ 63 (169)
T PRK07922 4 GAITVRRARTSD-VPAIKRLVDP-YAQ---GRILLE--------KNLVT---LYEA-V-QEFWVAEHLDGEV--VGCGAL 63 (169)
T ss_pred CCceeecCCHhh-HHHHHHHHHH-Hhh---cCcccc--------chHHH---HHhh-c-CcEEEEEecCCcE--EEEEEE
Confidence 459999999999 6665555322 211 111100 01111 1111 1 2233445 55556 777665
Q ss_pred hhhhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeccc
Q 025854 142 SEELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFENDE 221 (247)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~ 221 (247)
... ....++|..++|+|+|||+|||++||+.+++++++.|+..+++.+. +++||+|+||+..+..
T Consensus 64 ~~~----------~~~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~~g~~~l~~~~~-----~~~fY~k~GF~~~~~~ 128 (169)
T PRK07922 64 HVM----------WEDLAEIRTVAVDPAARGRGVGHAIVERLLDVARELGLSRVFVLTF-----EVEFFARHGFVEIDGT 128 (169)
T ss_pred eec----------CCCceEEEEEEECHHHhCCCHHHHHHHHHHHHHHHcCCCEEEEEec-----cHHHHHHCCCEECccc
Confidence 211 2246789999999999999999999999999999999999988764 2679999999987654
No 26
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=99.48 E-value=1.2e-12 Score=106.72 Aligned_cols=145 Identities=19% Similarity=0.158 Sum_probs=92.2
Q ss_pred CCCceEEecCccchhhHHHHHHHHhhhcccCCCccccchhhhhhhHHHHHHHHHHHhcCCCceeEEEEEccccCceeeee
Q 025854 61 DKSSLVVDETTAEDQLWAAACLRVRSFHQFDPDSFGVQDHKKHLAEREFEAMKERIAGKRKEFRTVACINATLPLSQISS 140 (247)
Q Consensus 61 ~~~~v~IR~a~~~D~~~~~a~l~~~~~~~~~p~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~vg~~~ 140 (247)
+.+.+++|+++.+| +..+..+.-.... ..+..... .........+..+.........+++..+++. +|++.
T Consensus 3 ~~~~l~lR~~~~~D-~~~l~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~--iG~~~ 73 (186)
T PRK15130 3 SAHSVKLRPLERED-LRFVHQLDNNASV----MRYWFEEP--YEAFVELSDLYDKHIHDQSERRFVVECDGEK--AGLVE 73 (186)
T ss_pred CCCeeEEecCCHHH-HHHHHHHhcChHH----HhhcCCcc--cccHHHHHHHHHHhhhcccCcEEEEEECCEE--EEEEE
Confidence 45569999999998 5544443221100 00110000 0001111122222221233344555566666 88887
Q ss_pred ehhhhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHH-cCCcEEEEEEecCCHHHHHHHHHCCCEEec
Q 025854 141 VSEELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQG-WGISDLYVHVAFDNEPAKKLYMKSGFIFEN 219 (247)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~-~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~ 219 (247)
+... ......+.+ .++|+|+|||+|+|+++++.+++++.+ .|+.+|.+.|...|.+|++||+|+||+.++
T Consensus 74 ~~~~--------~~~~~~~~~-~~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~yek~GF~~~~ 144 (186)
T PRK15130 74 LVEI--------NHVHRRAEF-QIIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFEVEG 144 (186)
T ss_pred EEee--------cCCCCeEEE-EEEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHHHCCCEEEE
Confidence 6321 112234555 699999999999999999999999975 599999999999999999999999999988
Q ss_pred cccc
Q 025854 220 DEPA 223 (247)
Q Consensus 220 ~~~~ 223 (247)
....
T Consensus 145 ~~~~ 148 (186)
T PRK15130 145 ELIH 148 (186)
T ss_pred EEeh
Confidence 7553
No 27
>PRK10314 putative acyltransferase; Provisional
Probab=99.47 E-value=4.3e-13 Score=106.65 Aligned_cols=125 Identities=16% Similarity=0.198 Sum_probs=85.3
Q ss_pred ecCccchhhHHHHHHHHhhhcccCCCccccchhhhhhhHHHHHHHHHHHhcCCCceeEEEEEccccCceeeeeehhhhhh
Q 025854 68 DETTAEDQLWAAACLRVRSFHQFDPDSFGVQDHKKHLAEREFEAMKERIAGKRKEFRTVACINATLPLSQISSVSEELCA 147 (247)
Q Consensus 68 R~a~~~D~~~~~a~l~~~~~~~~~p~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~ 147 (247)
.+.+.++ +..+..||...|..-..-.+. ..+ .....+..+.+++..++++ +|++.+...
T Consensus 10 ~~l~~~~-~~~~~~lR~~VF~~eq~~~~~--e~D-------------~~d~~~~~~h~~~~~~~~~--vg~~r~~~~--- 68 (153)
T PRK10314 10 SELSVSQ-LYALLQLRCAVFVVEQNCPYQ--DID-------------GDDLTGDNRHILGWKNDEL--VAYARILKS--- 68 (153)
T ss_pred hhCCHHH-HHHHHHHHHHHhhhhcCCCcc--ccC-------------CCCCCCCcEEEEEEECCEE--EEEEEEecC---
Confidence 3444544 778888888888641111111 111 0000123445556666666 888776321
Q ss_pred hhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHc-CCcEEEEEEecCCHHHHHHHHHCCCEEeccc
Q 025854 148 ECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGW-GISDLYVHVAFDNEPAKKLYMKSGFIFENDE 221 (247)
Q Consensus 148 ~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~-g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~ 221 (247)
......++|..++|+|+|||+|||++||+++++++++. +...++|++ +..|..||+|+||+.++..
T Consensus 69 -----~~~~~~~~i~rv~V~~~~rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a---~~~a~~fY~k~GF~~~g~~ 135 (153)
T PRK10314 69 -----DDDLEPVVIGRVIVSEALRGEKVGQQLMSKTLESCTRHWPDKPVYLGA---QAHLQNFYQSFGFIPVTEV 135 (153)
T ss_pred -----CCCCCCEEEEEEEECHHHhCCCHHHHHHHHHHHHHHHHCCCCcEEEeh---HHHHHHHHHHCCCEECCCc
Confidence 12223579999999999999999999999999999875 777888875 4678999999999998875
No 28
>PRK10514 putative acetyltransferase; Provisional
Probab=99.47 E-value=2.2e-12 Score=100.67 Aligned_cols=126 Identities=17% Similarity=0.182 Sum_probs=80.9
Q ss_pred eEEecCccchhhHHHHHHHHhhhcccCCCccccchhhhhhhHHHHHHHHHHHhcCCCceeEEEE-EccccCceeeeeehh
Q 025854 65 LVVDETTAEDQLWAAACLRVRSFHQFDPDSFGVQDHKKHLAEREFEAMKERIAGKRKEFRTVAC-INATLPLSQISSVSE 143 (247)
Q Consensus 65 v~IR~a~~~D~~~~~a~l~~~~~~~~~p~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~vg~~~~~~ 143 (247)
+.||+++.+| ...+..+....+... ..+. ... ..+..+...+.+... .. .+++. .++++ +|++.+..
T Consensus 2 ~~ir~~~~~D-~~~l~~l~~~~~~~~--~~~~-~~~----~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~--iG~~~~~~ 69 (145)
T PRK10514 2 ISIRRSRHEE-GERLVAIWRRSVDAT--HDFL-SAE----DRAEIEELVRSFLPE-AP-LWVAVDERDQP--VGFMLLSG 69 (145)
T ss_pred ceeeecchhh-HHHHHHHHHHHHHHh--Cccc-Cch----hHHHHHHHHHHHhcc-Cc-eEEEEecCCcE--EEEEEEec
Confidence 6799999988 666555544333211 1111 111 112222222233222 22 22333 34555 78776521
Q ss_pred hhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEecccc
Q 025854 144 ELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFENDEP 222 (247)
Q Consensus 144 ~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~~ 222 (247)
.++..++|+|+|||+|+|++|++.+++.+ .++.++|...|.+|++||+|+||+..+...
T Consensus 70 ---------------~~~~~~~v~p~~rgkGig~~Ll~~~~~~~-----~~i~~~v~~~N~~a~~~yek~Gf~~~~~~~ 128 (145)
T PRK10514 70 ---------------GHMEALFVDPDVRGCGVGRMLVEHALSLH-----PELTTDVNEQNEQAVGFYKKMGFKVTGRSE 128 (145)
T ss_pred ---------------CcEeEEEECHHhccCCHHHHHHHHHHHhc-----cccEEEeecCCHHHHHHHHHCCCEEecccc
Confidence 24568999999999999999999999864 357899999999999999999999988754
No 29
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=99.45 E-value=9.5e-12 Score=100.81 Aligned_cols=90 Identities=12% Similarity=0.109 Sum_probs=72.4
Q ss_pred eEEEEEccccCceeeeeehhhhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHH-cCCcEEEEEEecC
Q 025854 124 RTVACINATLPLSQISSVSEELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQG-WGISDLYVHVAFD 202 (247)
Q Consensus 124 ~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~-~g~~~i~L~v~~~ 202 (247)
.++++..+++ +|++++.. .......++| .++++|+|||+|+|+++++.+++++.+ .|++++.+.|..+
T Consensus 69 ~~~i~~~~~~--iG~~~l~~--------~~~~~~~~~i-g~~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~ 137 (179)
T PRK10151 69 MFMIFKEDEL--IGVLSFNR--------IEPLNKTAYI-GYWLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVD 137 (179)
T ss_pred EEEEEECCEE--EEEEEEEe--------eccCCCceEE-EEEEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCC
Confidence 4555566666 88887632 1222345666 468999999999999999999999976 4899999999999
Q ss_pred CHHHHHHHHHCCCEEecccccc
Q 025854 203 NEPAKKLYMKSGFIFENDEPAW 224 (247)
Q Consensus 203 N~~A~~fY~k~GF~~~~~~~~~ 224 (247)
|.+++++|+|+||+.++.....
T Consensus 138 N~~S~~v~ek~Gf~~~g~~~~~ 159 (179)
T PRK10151 138 NPASNQVALRNGFTLEGCLKQA 159 (179)
T ss_pred CHHHHHHHHHCCCEEEeEeccc
Confidence 9999999999999999987654
No 30
>PRK07757 acetyltransferase; Provisional
Probab=99.45 E-value=1.9e-12 Score=102.06 Aligned_cols=121 Identities=14% Similarity=0.162 Sum_probs=82.0
Q ss_pred eEEecCccchhhHHHHHHHHhhhcccCCCccccchhhhhhhHHHHHHHHHHHhcCCCceeEEEEEccccCceeeeeehhh
Q 025854 65 LVVDETTAEDQLWAAACLRVRSFHQFDPDSFGVQDHKKHLAEREFEAMKERIAGKRKEFRTVACINATLPLSQISSVSEE 144 (247)
Q Consensus 65 v~IR~a~~~D~~~~~a~l~~~~~~~~~p~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~ 144 (247)
+.||+++.+| ...+..+....... ...... ..+.+...+ .. .+++..++++ +|++.+..
T Consensus 2 ~~ir~~~~~D-~~~l~~l~~~~~~~----~~~~~~--------~~~~~~~~~----~~-~~i~~~~~~l--vG~~~l~~- 60 (152)
T PRK07757 2 MEIRKARLSD-VKAIHALINVYAKK----GLMLPR--------SLDELYENI----RD-FYVAEEEGEI--VGCCALHI- 60 (152)
T ss_pred ceEeeCCccc-HHHHHHHHHHHHhc----CCccCC--------CHHHHHhcc----Cc-EEEEEECCEE--EEEEEEEe-
Confidence 6899999998 76666664332211 111000 011111121 12 2345566666 88887632
Q ss_pred hhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEecc
Q 025854 145 LCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFEND 220 (247)
Q Consensus 145 ~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~ 220 (247)
.....++|..++|+|+|||+|+|++|++.+++.+++.|+..+.+.+. +.+||+|+||+..+.
T Consensus 61 ---------~~~~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~~~g~~~i~~~~~-----~~~~Y~k~GF~~~~~ 122 (152)
T PRK07757 61 ---------LWEDLAEIRSLAVSEDYRGQGIGRMLVEACLEEARELGVKRVFALTY-----QPEFFEKLGFREVDK 122 (152)
T ss_pred ---------ccCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCeEEEEeC-----cHHHHHHCCCEEccc
Confidence 12346789999999999999999999999999999999998877653 357999999998876
No 31
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=99.44 E-value=1.6e-12 Score=98.98 Aligned_cols=86 Identities=23% Similarity=0.341 Sum_probs=71.6
Q ss_pred EEEEccccCceeeeeehhhhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHH
Q 025854 126 VACINATLPLSQISSVSEELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEP 205 (247)
Q Consensus 126 ~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~ 205 (247)
++..++++ +|.+.+.. ....+++..++|+|+|||+|+|++|++.+++++++.|+..+++.|...|..
T Consensus 35 ~~~~~~~~--vg~~~~~~-----------~~~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~i~~~~~~~n~~ 101 (131)
T TIGR01575 35 LARIGGKV--VGYAGVQI-----------VLDEAHILNIAVKPEYQGQGIGRALLRELIDEAKGRGVNEIFLEVRVSNIA 101 (131)
T ss_pred EEecCCeE--EEEEEEEe-----------cCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCeEEEEEecccHH
Confidence 33345666 77776521 123467899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCEEecccccc
Q 025854 206 AKKLYMKSGFIFENDEPAW 224 (247)
Q Consensus 206 A~~fY~k~GF~~~~~~~~~ 224 (247)
+++||+|+||+.++....+
T Consensus 102 ~~~~y~~~Gf~~~~~~~~~ 120 (131)
T TIGR01575 102 AQALYKKLGFNEIAIRRNY 120 (131)
T ss_pred HHHHHHHcCCCcccccccc
Confidence 9999999999998886653
No 32
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=99.41 E-value=1.9e-12 Score=98.84 Aligned_cols=127 Identities=17% Similarity=0.209 Sum_probs=84.0
Q ss_pred EEecCccchhhHHHHHHHHhhhcccCCCccccchhhhhhhHHHHHHHHHHHhcCCCceeEEEEEccccCceeeeeehhhh
Q 025854 66 VVDETTAEDQLWAAACLRVRSFHQFDPDSFGVQDHKKHLAEREFEAMKERIAGKRKEFRTVACINATLPLSQISSVSEEL 145 (247)
Q Consensus 66 ~IR~a~~~D~~~~~a~l~~~~~~~~~p~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~ 145 (247)
.||+++++| +.++..+...+|....+ .. +........+. ....+++..++++ +|.+.+...-
T Consensus 1 ~iR~~~~~d-~~~i~~l~~~~F~~~~~-~~-----------~~~~~~~~~~~---~~~~~~~~~~~~i--vg~~~~~~~~ 62 (127)
T PF13527_consen 1 EIRPLTESD-FEQIIELFNEAFGDSES-PP-----------EIWEYFRNLYG---PGRCVVAEDDGKI--VGHVGLIPRR 62 (127)
T ss_dssp -EEEE-GGG-HHHHHHHHHHHTTT-CH-HH-----------HHHHHHHHHHH---TTEEEEEEETTEE--EEEEEEEEEE
T ss_pred CceECCHHH-HHHHHHHHHHHCCCCCC-ch-----------hhhhhhhcccC---cCcEEEEEECCEE--EEEEEEEEEE
Confidence 489999989 99999888888855211 11 11222222333 2345666777777 7766653210
Q ss_pred hhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEe
Q 025854 146 CAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFE 218 (247)
Q Consensus 146 ~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~ 218 (247)
+. ..+.....++|..++|+|+|||+|+|++||+++++.+++.|+..+.|.. .+ ..||+|+||+..
T Consensus 63 ~~---~~g~~~~~~~i~~v~v~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~--~~---~~~Y~~~G~~~~ 127 (127)
T PF13527_consen 63 LS---VGGKKFKAAYIGDVAVDPEYRGRGLGRQLMRALLERARERGVPFIFLFP--SS---PPFYRRFGFEYA 127 (127)
T ss_dssp EE---ETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE---SS---HHHHHHTTEEEE
T ss_pred EE---ECCEEEEEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec--CC---hhhhhcCCCEEC
Confidence 00 1122334699999999999999999999999999999999998777754 22 579999999863
No 33
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.40 E-value=4.8e-12 Score=112.26 Aligned_cols=128 Identities=13% Similarity=0.160 Sum_probs=87.3
Q ss_pred eEEecCccchhhHHHHHHHHhhhcccCCCccccchhhhhhhHHHHHHHHHHHhcCCCceeEEEEEcc---ccCceeeeee
Q 025854 65 LVVDETTAEDQLWAAACLRVRSFHQFDPDSFGVQDHKKHLAEREFEAMKERIAGKRKEFRTVACINA---TLPLSQISSV 141 (247)
Q Consensus 65 v~IR~a~~~D~~~~~a~l~~~~~~~~~p~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~---~~~~vg~~~~ 141 (247)
++||+++.+| +..+..|..... .|...... +.+.+ +.+.+.. . . .+++...+ +...+|++.+
T Consensus 187 ~~Ir~a~~~D-l~ri~~L~~~tn------qfn~~~~~--~s~~~---i~~~l~~-~-~-~~~~~~~d~~gd~givG~~~~ 251 (320)
T TIGR01686 187 LNISKNDEQN-VQRVEELLGRTN------QFNATYTR--LNQED---VAQHMQK-E-E-IVTVSMSDRFGDSGIIGIFVF 251 (320)
T ss_pred EEEEECChhh-hHHHHHHHHhHH------hhhccCcc--CCHHH---HHHHhcC-C-C-EEEEEEEecCCCCceEEEEEE
Confidence 8999999999 888777765431 11111111 22222 3333332 2 2 22233211 1112666554
Q ss_pred hhhhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEe--cCCHHHHHHHHHCCCEEe
Q 025854 142 SEELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVA--FDNEPAKKLYMKSGFIFE 218 (247)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~--~~N~~A~~fY~k~GF~~~ 218 (247)
. . ....++|..++|+|.+||+|||++||+.+++.+++.|+..++|.+. ..|.+|++||+++||+.+
T Consensus 252 ~---------~--~~~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~~fY~~~GF~~~ 319 (320)
T TIGR01686 252 E---------K--KEGNLFIDDLCMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFLSFYEQIGFEDE 319 (320)
T ss_pred E---------e--cCCcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHHHHHHHcCCccC
Confidence 1 1 2346789999999999999999999999999999999999999885 479999999999999854
No 34
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=99.40 E-value=7.3e-12 Score=98.76 Aligned_cols=104 Identities=18% Similarity=0.109 Sum_probs=76.9
Q ss_pred HHHHHHHHhcCCCceeEEEEEccccCceeeeeehhhhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHH
Q 025854 109 FEAMKERIAGKRKEFRTVACINATLPLSQISSVSEELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQ 188 (247)
Q Consensus 109 ~~~l~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~ 188 (247)
.+.+.+.+........+++..++.. +|++++... ......+++ .++++|++| +|+|+++++.+++++.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~g~~--vG~~~~~~~--------~~~~~~~~~-g~~~~~~~~-~G~g~~~~~~~~~~a~ 105 (156)
T TIGR03585 38 HLHFIEALKQDPNRRYWIVCQESRP--IGVISFTDI--------NLVHKSAFW-GIYANPFCK-PGVGSVLEEAALEYAF 105 (156)
T ss_pred HHHHHHHhhcCCCceEEEEEECCEE--EEEEEEEec--------ChhhCeEEE-EEEeChhhh-cCchHHHHHHHHHHHH
Confidence 3444445543333334455556666 888877321 112234555 466999999 9999999999999997
Q ss_pred H-cCCcEEEEEEecCCHHHHHHHHHCCCEEecccccc
Q 025854 189 G-WGISDLYVHVAFDNEPAKKLYMKSGFIFENDEPAW 224 (247)
Q Consensus 189 ~-~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~~~~ 224 (247)
+ .|+.++.+.|...|.+|++||+|+||+.++....+
T Consensus 106 ~~~~~~~i~~~v~~~N~~s~~~y~k~Gf~~~g~~~~~ 142 (156)
T TIGR03585 106 EHLGLHKLSLEVLEFNNKALKLYEKFGFEREGVFRQG 142 (156)
T ss_pred hhCCeeEEEEEEeccCHHHHHHHHHcCCeEeeeehhh
Confidence 5 59999999999999999999999999999976654
No 35
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=99.39 E-value=5.4e-13 Score=103.70 Aligned_cols=151 Identities=15% Similarity=0.191 Sum_probs=105.1
Q ss_pred eEEecCccchhhHHHHHHHHhhhcccCCCccccchhhhhhhHHHHHHHHHHHhcCCCceeEEEE-EccccCceeeeeehh
Q 025854 65 LVVDETTAEDQLWAAACLRVRSFHQFDPDSFGVQDHKKHLAEREFEAMKERIAGKRKEFRTVAC-INATLPLSQISSVSE 143 (247)
Q Consensus 65 v~IR~a~~~D~~~~~a~l~~~~~~~~~p~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~vg~~~~~~ 143 (247)
+.||.++.+| +-.....-+. . .|+.|...++- .-+.. -+...+++. .++++ ||.+-..-
T Consensus 2 m~iR~ar~~D-L~~mQ~~Nl~---~-lpENyqmkyyl------------yh~ls-wp~lSyVA~D~~gki--VGYvlAkm 61 (193)
T KOG3235|consen 2 MNIRRARPDD-LLEMQHCNLL---N-LPENYQMKYYL------------YHGLS-WPQLSYVAEDENGKI--VGYVLAKM 61 (193)
T ss_pred cccccCCHHH-HHHhhhcccc---c-CcHHHhHHHHH------------Hhhcc-cccceEEEEcCCCcE--EEEeeeeh
Confidence 6799999999 4333222222 2 35555544432 01111 122334555 45566 66554321
Q ss_pred hhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHc-CCcEEEEEEecCCHHHHHHHH-HCCCEEeccc
Q 025854 144 ELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGW-GISDLYVHVAFDNEPAKKLYM-KSGFIFENDE 221 (247)
Q Consensus 144 ~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~-g~~~i~L~v~~~N~~A~~fY~-k~GF~~~~~~ 221 (247)
+ ....+.+..|+|..|+|...||+.|||++||..+.....+. +...+.|+|...|.+|+.||+ .+||++...+
T Consensus 62 e-----e~p~~~~~hGhItSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY~~tl~F~v~eve 136 (193)
T KOG3235|consen 62 E-----EDPDDEPPHGHITSLAVKRSYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLYKNTLGFVVCEVE 136 (193)
T ss_pred h-----hcccCCCCCCeeEEeeehhhHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhhhhccceEEeecc
Confidence 1 02344566899999999999999999999999988776554 778899999999999999999 8999999998
Q ss_pred ccccccccCCcceEEEEccCCC
Q 025854 222 PAWHARFLDRPRRILLWIGLPG 243 (247)
Q Consensus 222 ~~~~~~~~~~~~~l~~~~~l~~ 243 (247)
+.| |-|.+...-|+|+|+.
T Consensus 137 ~kY---YadGedAyaM~~~L~~ 155 (193)
T KOG3235|consen 137 PKY---YADGEDAYAMRKDLSV 155 (193)
T ss_pred ccc---ccccHHHHHHHHHHHH
Confidence 876 7777888888877653
No 36
>PLN02825 amino-acid N-acetyltransferase
Probab=99.38 E-value=5.4e-12 Score=117.53 Aligned_cols=121 Identities=12% Similarity=0.072 Sum_probs=84.2
Q ss_pred EecCccchhhHHHHHHHHhhhcccCCCccccchhhhhhhHHHHHHHHHHHhcCCCceeEEEEEccccCceeeeeehhhhh
Q 025854 67 VDETTAEDQLWAAACLRVRSFHQFDPDSFGVQDHKKHLAEREFEAMKERIAGKRKEFRTVACINATLPLSQISSVSEELC 146 (247)
Q Consensus 67 IR~a~~~D~~~~~a~l~~~~~~~~~p~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~ 146 (247)
||+++.+| +..+..|....... . ..... . .+.+... ... .+++..++++ +|++.+.
T Consensus 370 IR~At~eD-i~~I~~Li~~lee~--g--~lv~r-----s---~e~le~e----i~~-f~V~e~Dg~I--VG~aal~---- 425 (515)
T PLN02825 370 TRMARVED-LAGIRQIIRPLEES--G--ILVRR-----T---DEELLRA----LDS-FVVVEREGSI--IACAALF---- 425 (515)
T ss_pred heeCCHHH-HHHHHHHHHHHHHc--C--CCcCC-----C---HHHHHhc----CCc-EEEEEECCEE--EEEEEEE----
Confidence 79999999 77766665432211 1 11100 1 1112111 122 3455667777 8877762
Q ss_pred hhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEecc
Q 025854 147 AECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFEND 220 (247)
Q Consensus 147 ~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~ 220 (247)
.......++|..++|+|+|||+|+|++||+++++.|+++|+..+.|.+ +.+.+||+|+||+..+.
T Consensus 426 -----~~~~~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Llt----t~a~~fY~k~GF~~~~~ 490 (515)
T PLN02825 426 -----PFFEEKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLLT----TRTADWFVRRGFSECSI 490 (515)
T ss_pred -----eecCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEe----CcHHHHHHHCCCEEeCh
Confidence 122345689999999999999999999999999999999999999876 34689999999998776
No 37
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.38 E-value=5e-12 Score=116.82 Aligned_cols=123 Identities=13% Similarity=0.148 Sum_probs=83.5
Q ss_pred eEEecCccchhhHHHHHHHHhhhcccCCCccccchhhhhhhHHHHHHHHHHHhcCCCceeEEEEEccccCceeeeeehhh
Q 025854 65 LVVDETTAEDQLWAAACLRVRSFHQFDPDSFGVQDHKKHLAEREFEAMKERIAGKRKEFRTVACINATLPLSQISSVSEE 144 (247)
Q Consensus 65 v~IR~a~~~D~~~~~a~l~~~~~~~~~p~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~ 144 (247)
+.||+++.+| +..+..+..... + ..+.... .. + .+...... .+++..++++ +|++.+..
T Consensus 295 ~~IR~at~~D-~~~I~~L~~~~~-~---~~~~~~~-----~~---~----~l~~~~~~-~~va~~dg~i--VG~~~~~~- 353 (441)
T PRK05279 295 EQLRRATIDD-VGGILELIRPLE-E---QGILVRR-----SR---E----QLEREIDK-FTVIERDGLI--IGCAALYP- 353 (441)
T ss_pred HHeEeCCHHH-HHHHHHHHHHHH-H---cCCcccc-----CH---H----HHhcccCc-EEEEEECCEE--EEEEEEEE-
Confidence 6789999988 777766643211 1 1111000 00 1 12211122 2345556666 78776521
Q ss_pred hhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEecc
Q 025854 145 LCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFEND 220 (247)
Q Consensus 145 ~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~ 220 (247)
......++|..++|+|+|||+|+|++||+++++++++.|+..+.+.+ ..|++||+|+||+..+.
T Consensus 354 --------~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~~----~~a~~fY~k~GF~~~g~ 417 (441)
T PRK05279 354 --------FPEEKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLGLKRLFVLT----TRTAHWFLERGFVPVDV 417 (441)
T ss_pred --------cCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEec----chHHHHHHHCcCEECCh
Confidence 22235689999999999999999999999999999999999887642 46899999999999887
No 38
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.38 E-value=8.4e-12 Score=94.69 Aligned_cols=133 Identities=17% Similarity=0.183 Sum_probs=88.4
Q ss_pred eEEecCccchhhHH--HHHHHHhhhcccCCCccccchhhhhhhHHHHHHHHHHHhcCCC-ceeEEEEEccccCceeeeee
Q 025854 65 LVVDETTAEDQLWA--AACLRVRSFHQFDPDSFGVQDHKKHLAEREFEAMKERIAGKRK-EFRTVACINATLPLSQISSV 141 (247)
Q Consensus 65 v~IR~a~~~D~~~~--~a~l~~~~~~~~~p~~f~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~vg~~~~ 141 (247)
+.+|+...+| +.. +..|.. +-. . -. ...++++...+.+....+ ++..++........+|.+++
T Consensus 7 ~~lR~L~~~D-~~kGf~elL~q--LT~--v--G~-------vt~e~F~krf~~mk~~~~~Y~i~Vied~~s~~vigtatL 72 (150)
T KOG3396|consen 7 FKLRPLEEDD-YGKGFIELLKQ--LTS--V--GV-------VTREQFEKRFEAMKKSGDWYYIVVIEDKESEKVIGTATL 72 (150)
T ss_pred eEEeeccccc-ccchHHHHHHH--Hhh--c--cc-------cCHHHHHHHHHHHHhcCCcEEEEEEEeCCcCeEEEEEEE
Confidence 9999999988 553 222211 111 0 01 222333333334444444 44433333322222666665
Q ss_pred --hhhhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEec
Q 025854 142 --SEELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFEN 219 (247)
Q Consensus 142 --~~~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~ 219 (247)
...+ +......|+|.++.|+++|||+++|+.|+..+...++..||.++.|.+.+.| +.||+|+||...+
T Consensus 73 ~IE~Kf------Ih~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~n---v~FYeKcG~s~~~ 143 (150)
T KOG3396|consen 73 FIERKF------IHGCGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKN---VKFYEKCGYSNAG 143 (150)
T ss_pred EEehhh------hhcccccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhh---hhHHHHcCccccc
Confidence 3332 2334457899999999999999999999999999999999999999999888 5699999999766
Q ss_pred c
Q 025854 220 D 220 (247)
Q Consensus 220 ~ 220 (247)
.
T Consensus 144 ~ 144 (150)
T KOG3396|consen 144 N 144 (150)
T ss_pred h
Confidence 3
No 39
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.37 E-value=4.8e-12 Score=116.51 Aligned_cols=124 Identities=17% Similarity=0.176 Sum_probs=83.4
Q ss_pred eEEecCccchhhHHHHHHHHhhhcccCCCccccchhhhhhhHHHHHHHHHHHhcCCCceeEEEEEccccCceeeeeehhh
Q 025854 65 LVVDETTAEDQLWAAACLRVRSFHQFDPDSFGVQDHKKHLAEREFEAMKERIAGKRKEFRTVACINATLPLSQISSVSEE 144 (247)
Q Consensus 65 v~IR~a~~~D~~~~~a~l~~~~~~~~~p~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~ 144 (247)
..||+++.+| +..+..+..... + ..+.. ....+.+.+. ... .+++..++++ +|++.+.
T Consensus 283 ~~IR~at~~D-l~~I~~L~~~~~-~---~~~~~--------~~~~~~l~~~----~~~-~~V~~~dg~i--VG~~~~~-- 340 (429)
T TIGR01890 283 ESIRQATIDD-IGGIAALIRPLE-E---QGILV--------RRSREYLERE----ISE-FSIIEHDGNI--IGCAALY-- 340 (429)
T ss_pred hheEECCHHH-HHHHHHHHHHHH-H---cCCch--------hhhHHHHHhh----cCc-EEEEEECCEE--EEEEEEE--
Confidence 3699999888 777666643221 1 11111 1111112211 122 2344566666 8877762
Q ss_pred hhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeccc
Q 025854 145 LCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFENDE 221 (247)
Q Consensus 145 ~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~ 221 (247)
.......++|..++|+|+|||+|+|++||++++++|+++|+..+++. ..| +.+||+|+||+..+..
T Consensus 341 -------~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~--~~~--a~~fY~k~GF~~~g~~ 406 (429)
T TIGR01890 341 -------PYAEEDCGEMACLAVSPEYQDGGRGERLLAHIEDRARQMGISRLFVL--TTR--TGHWFRERGFQTASVD 406 (429)
T ss_pred -------ecCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEe--ecc--hHHHHHHCCCEECChh
Confidence 22234568999999999999999999999999999999999987654 344 5799999999998773
No 40
>PRK10562 putative acetyltransferase; Provisional
Probab=99.37 E-value=1.7e-11 Score=96.06 Aligned_cols=125 Identities=19% Similarity=0.176 Sum_probs=80.2
Q ss_pred EecCccchhhHHHHHHHHhhhcccCCCccccchhhhhhhHHHHHHHHHHHhcCCCceeEEEEEccccCceeeeeehhhhh
Q 025854 67 VDETTAEDQLWAAACLRVRSFHQFDPDSFGVQDHKKHLAEREFEAMKERIAGKRKEFRTVACINATLPLSQISSVSEELC 146 (247)
Q Consensus 67 IR~a~~~D~~~~~a~l~~~~~~~~~p~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~ 146 (247)
||+++.+| +..+..+....... +..+.. .. ........+.+.+. .....++++..+.+ +|++.+..
T Consensus 2 ir~~~~~D-~~~i~~l~~~~~~~--~~~~~~--~~--~~~~~~~~~~~~~~--~~~~~~v~~~~~~~--iG~~~~~~--- 67 (145)
T PRK10562 2 IREYQPSD-LPAILQLWLESTIW--AHPFIK--EQ--YWRESAPLVRDVYL--PAAQTWVWEEDGKL--LGFVSVLE--- 67 (145)
T ss_pred cccccchh-hHHHHHHHHHhccc--cCCCCC--HH--HHHHhHHHhhhhhc--CcccEEEEEECCEE--EEEEEEee---
Confidence 78899988 77766665443211 111110 00 11111112222222 11223344555565 78776621
Q ss_pred hhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeccc
Q 025854 147 AECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFENDE 221 (247)
Q Consensus 147 ~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~ 221 (247)
..++..++|+|+|||+|+|++|++.+++. +..+.+.|...|..+++||+|+||+.++..
T Consensus 68 -----------~~~i~~~~v~~~~rg~G~g~~ll~~~~~~-----~~~~~~~v~~~N~~s~~~y~k~Gf~~~~~~ 126 (145)
T PRK10562 68 -----------GRFVGALFVAPKAVRRGIGKALMQHVQQR-----YPHLSLEVYQKNQRAVNFYHAQGFRIVDSA 126 (145)
T ss_pred -----------ccEEEEEEECHHHcCCCHHHHHHHHHHhh-----CCeEEEEEEcCChHHHHHHHHCCCEEcccc
Confidence 13577899999999999999999988774 457889999999999999999999998864
No 41
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.35 E-value=1.7e-11 Score=95.84 Aligned_cols=79 Identities=14% Similarity=0.204 Sum_probs=66.5
Q ss_pred EEEccccCceeeeeehhhhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHH
Q 025854 127 ACINATLPLSQISSVSEELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPA 206 (247)
Q Consensus 127 ~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A 206 (247)
+..++.+ +|++++. .......++|..|+|+|+|||+|+|..|+++++..|++.|++++++.+. .+
T Consensus 45 ~E~~g~v--iGC~aL~---------~~~~~~~gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~LTt----~~ 109 (153)
T COG1246 45 IERDGKV--IGCAALH---------PVLEEDLGELRSLAVHPDYRGSGRGERLLERLLADARELGIKELFVLTT----RS 109 (153)
T ss_pred eeeCCcE--EEEEeec---------ccCccCeeeEEEEEECHHhcCCCcHHHHHHHHHHHHHHcCCceeeeeec----cc
Confidence 3456666 8888872 1356778999999999999999999999999999999999999998764 35
Q ss_pred HHHHHHCCCEEecc
Q 025854 207 KKLYMKSGFIFEND 220 (247)
Q Consensus 207 ~~fY~k~GF~~~~~ 220 (247)
..||+++||+....
T Consensus 110 ~~~F~~~GF~~vd~ 123 (153)
T COG1246 110 PEFFAERGFTRVDK 123 (153)
T ss_pred HHHHHHcCCeECcc
Confidence 67999999997666
No 42
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.34 E-value=1.3e-11 Score=86.72 Aligned_cols=75 Identities=21% Similarity=0.250 Sum_probs=58.5
Q ss_pred eEEEEEccccCceeeeeehhhhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCC
Q 025854 124 RTVACINATLPLSQISSVSEELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDN 203 (247)
Q Consensus 124 ~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N 203 (247)
.+++..++++ +|++.+.. .....+|..++|+|+|||+|||++||+.+.+.++. ..+++.+ |
T Consensus 5 ~~~~~~~~~i--vG~~~~~~-----------~~~~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~---~~i~l~~---~ 65 (79)
T PF13508_consen 5 FFVAEDDGEI--VGFIRLWP-----------NEDFAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKS---KKIFLFT---N 65 (79)
T ss_dssp EEEEEETTEE--EEEEEEEE-----------TTTEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTC---SEEEEEE---E
T ss_pred EEEEEECCEE--EEEEEEEE-----------cCCEEEEEEEEECHHHcCCCHHHHHHHHHHHHcCC---CcEEEEE---c
Confidence 4455667777 88777621 23378999999999999999999999999888843 4566665 5
Q ss_pred HHHHHHHHHCCCEE
Q 025854 204 EPAKKLYMKSGFIF 217 (247)
Q Consensus 204 ~~A~~fY~k~GF~~ 217 (247)
+.+.+||+|+||++
T Consensus 66 ~~~~~fY~~~GF~~ 79 (79)
T PF13508_consen 66 PAAIKFYEKLGFEE 79 (79)
T ss_dssp HHHHHHHHHTTEEE
T ss_pred HHHHHHHHHCcCCC
Confidence 78999999999985
No 43
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.33 E-value=1.1e-11 Score=118.88 Aligned_cols=123 Identities=15% Similarity=0.120 Sum_probs=84.4
Q ss_pred ceEEecCccchhhHHHHHHHHhhhcccCCCccccchhhhhhhHHHHHHHHHHHhcCCCceeEEEEEccccCceeeeeehh
Q 025854 64 SLVVDETTAEDQLWAAACLRVRSFHQFDPDSFGVQDHKKHLAEREFEAMKERIAGKRKEFRTVACINATLPLSQISSVSE 143 (247)
Q Consensus 64 ~v~IR~a~~~D~~~~~a~l~~~~~~~~~p~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~ 143 (247)
.++||+++.+| +..+..+... +.. ....+.. . .+ .+.... ...+++..++++ +|++.+..
T Consensus 463 gm~IR~a~~~D-~~~I~~L~~~-~~~-~~~~~~~-~---------~~----~l~~~~-~~~~Va~~~g~I--VG~~~l~~ 522 (614)
T PRK12308 463 GVKVRPARLTD-IDAIEGMVAY-WAG-LGENLPR-S---------RN----ELVRDI-GSFAVAEHHGEV--TGCASLYI 522 (614)
T ss_pred CCEEEECCHHH-HHHHHHHHHH-HHh-hhccccc-C---------HH----HHhccc-CcEEEEEECCEE--EEEEEEEE
Confidence 38899999998 7777666432 211 0111110 0 01 111111 223455667776 88877621
Q ss_pred hhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeccc
Q 025854 144 ELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFENDE 221 (247)
Q Consensus 144 ~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~ 221 (247)
.....++|..++|+|+|||+|||++||+++++++++.|+..+.+.+. +.+||+|+||+..+..
T Consensus 523 ----------~~~~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~~g~~~i~l~~~-----a~~FYek~GF~~~~~~ 585 (614)
T PRK12308 523 ----------YDSGLAEIRSLGVEAGWQVQGQGSALVQYLVEKARQMAIKKVFVLTR-----VPEFFMKQGFSPTSKS 585 (614)
T ss_pred ----------cCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEeeC-----cHHHHHHCCCEECCcc
Confidence 12235789999999999999999999999999999999999988642 4689999999988765
No 44
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=99.33 E-value=7.9e-12 Score=89.76 Aligned_cols=61 Identities=30% Similarity=0.351 Sum_probs=53.4
Q ss_pred EEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEecc
Q 025854 159 AYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFEND 220 (247)
Q Consensus 159 ~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~ 220 (247)
+.|..|+|+|+|||+|+|+.|+..+.+.+.+.|.. ..+.|..+|.+|++||+|+||+....
T Consensus 22 g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~-~~l~v~~~N~~s~~ly~klGf~~~~~ 82 (86)
T PF08445_consen 22 GEIGGVYTLPEHRRRGLGSALVAALARELLERGKT-PFLYVDADNEASIRLYEKLGFREIEE 82 (86)
T ss_dssp CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSE-EEEEEETT-HHHHHHHHHCT-EEEEE
T ss_pred cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCc-EEEEEECCCHHHHHHHHHcCCEEEEE
Confidence 78999999999999999999999999999998865 67889999999999999999998754
No 45
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.32 E-value=2e-11 Score=106.45 Aligned_cols=85 Identities=14% Similarity=0.118 Sum_probs=66.1
Q ss_pred eeEEEEEccccCceeeeeehhhhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecC
Q 025854 123 FRTVACINATLPLSQISSVSEELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFD 202 (247)
Q Consensus 123 ~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~ 202 (247)
..++++.++++ +|++.+... .....++..++|+|+|||+|||++||+.+++.+. ..+.+.|..+
T Consensus 47 ~~~~~~~~~~~--vG~~~~~~~----------~~~~~~~~~l~V~p~~rg~GiG~~Ll~~~~~~~~----~~~~~~~~~~ 110 (292)
T TIGR03448 47 RHLVAVDSDPI--VGYANLVPA----------RGTDPAMAELVVHPAHRRRGIGRALIRALLAKGG----GRLRVWAHGD 110 (292)
T ss_pred eEEEEEECCEE--EEEEEEEcC----------CCCcceEEEEEECHhhcCCCHHHHHHHHHHHhcc----CceEEEEcCC
Confidence 34556666666 888776221 1123578899999999999999999999998753 4578889899
Q ss_pred CHHHHHHHHHCCCEEeccccc
Q 025854 203 NEPAKKLYMKSGFIFENDEPA 223 (247)
Q Consensus 203 N~~A~~fY~k~GF~~~~~~~~ 223 (247)
|.+|++||+++||+.......
T Consensus 111 n~~a~~fy~~~Gf~~~~~~~~ 131 (292)
T TIGR03448 111 LPAARALASRLGLVPTRELLQ 131 (292)
T ss_pred CHHHHHHHHHCCCEEccEEEE
Confidence 999999999999997765433
No 46
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=99.31 E-value=8.2e-11 Score=90.98 Aligned_cols=86 Identities=17% Similarity=0.170 Sum_probs=66.3
Q ss_pred ceeEEEEEccccCceeeeeehhhhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHH-HHcCCcEEEEEEe
Q 025854 122 EFRTVACINATLPLSQISSVSEELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVA-QGWGISDLYVHVA 200 (247)
Q Consensus 122 ~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a-~~~g~~~i~L~v~ 200 (247)
.+.+.++..+.-..+|++.+.. .......++|. +.|.|+|||+|+|+.++..+++++ ++.|+.++...|.
T Consensus 56 ~~~~~i~~~~~~~~iG~i~~~~--------~~~~~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~ 126 (142)
T PF13302_consen 56 YYYFAIEDKDDGEIIGFIGLYN--------IDKNNNWAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVM 126 (142)
T ss_dssp EEEEEEEETTTTEEEEEEEEEE--------EETTTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEE
T ss_pred ceEEEEEeccCCceEEEeeeee--------cccCCCccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEEC
Confidence 3444555544411288887722 11245678875 899999999999999999999999 5679999999999
Q ss_pred cCCHHHHHHHHHCCCE
Q 025854 201 FDNEPAKKLYMKSGFI 216 (247)
Q Consensus 201 ~~N~~A~~fY~k~GF~ 216 (247)
.+|.+++++++|+||+
T Consensus 127 ~~N~~s~~~~~k~GF~ 142 (142)
T PF13302_consen 127 ADNEASRRLLEKLGFE 142 (142)
T ss_dssp TT-HHHHHHHHHTT-E
T ss_pred cCCHHHHHHHHHcCCC
Confidence 9999999999999996
No 47
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=99.26 E-value=9.7e-12 Score=96.63 Aligned_cols=91 Identities=15% Similarity=0.083 Sum_probs=77.8
Q ss_pred CCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEecccccccccccCCcce
Q 025854 155 DFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFENDEPAWHARFLDRPRR 234 (247)
Q Consensus 155 ~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~~~~~~~~~~~~~~ 234 (247)
..-.+++..|.|.|+||+.|+|+.||+.+.+.....+.-.+.|.|...|+-|+.||+|+||.+......+-.. -.....
T Consensus 66 ~~wh~HvTAltVap~~Rrl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI~mYkkLGY~~YR~Vi~YY~~-g~deda 144 (173)
T KOG3234|consen 66 TEWHGHVTALTVAPDYRRLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAIDMYKKLGYSVYRTVIEYYSV-GPDEDA 144 (173)
T ss_pred cceeeEEEEEEechhHHHHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHHHHHHhcCceEEEeeeeeecc-CCCcch
Confidence 3346899999999999999999999999999998887788999999999999999999999998887665221 145677
Q ss_pred EEEEccCCCCCC
Q 025854 235 ILLWIGLPGTKD 246 (247)
Q Consensus 235 l~~~~~l~~~~~ 246 (247)
+-|+|.|+.+.|
T Consensus 145 ~dMRKalSrD~d 156 (173)
T KOG3234|consen 145 YDMRKALSRDVD 156 (173)
T ss_pred HhhhhhhccCcc
Confidence 999999988764
No 48
>PRK13688 hypothetical protein; Provisional
Probab=99.24 E-value=7.6e-11 Score=93.97 Aligned_cols=59 Identities=19% Similarity=0.243 Sum_probs=46.6
Q ss_pred CCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeccc
Q 025854 155 DFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFENDE 221 (247)
Q Consensus 155 ~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~ 221 (247)
....++|..++|+|+|||+|||++|++.+. +.++. +.+...| .|.+||+|+||+..+..
T Consensus 76 ~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~----~~~~~---~~~~~~~-~a~~FY~k~GF~~~~~~ 134 (156)
T PRK13688 76 TQDYLELWKLEVLPKYQNRGYGEMLVDFAK----SFQLP---IKTIARN-KSKDFWLKLGFTPVEYK 134 (156)
T ss_pred CCCeEEEEEEEECHHHcCCCHHHHHHHHHH----HhCCe---EEEEecc-chHHHHHhCCCEEeEEe
Confidence 446789999999999999999999998644 44543 3444555 47899999999988876
No 49
>PRK01346 hypothetical protein; Provisional
Probab=99.24 E-value=9.2e-11 Score=107.33 Aligned_cols=135 Identities=16% Similarity=0.092 Sum_probs=90.1
Q ss_pred ceEEecCccchhhHHHHHHHHhhhcccCCCccccchhhhhhhHHHHHHHHHHHhcCCCceeEEEEEccccCceeeeeehh
Q 025854 64 SLVVDETTAEDQLWAAACLRVRSFHQFDPDSFGVQDHKKHLAEREFEAMKERIAGKRKEFRTVACINATLPLSQISSVSE 143 (247)
Q Consensus 64 ~v~IR~a~~~D~~~~~a~l~~~~~~~~~p~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~ 143 (247)
.++||+++.+| +.++..+...+|... . . .+..+.+...+. ....++++.++++ +|++.+..
T Consensus 6 ~~~iR~~~~~D-~~~i~~L~~~~f~~~-~---~---------~~~~~~~~~~~~---~~~~~va~~~~~l--vg~~~~~~ 66 (411)
T PRK01346 6 AITIRTATEED-WPAWFRAAATGFGDS-P---S---------DEELEAWRALVE---PDRTLGAFDGDEV--VGTAGAFD 66 (411)
T ss_pred CceeecCCHHH-HHHHHHHHHHHcCCC-C---C---------hHHHHHHHHhcC---cCCeEEEEECCEE--EEEEEEec
Confidence 48899999877 888888766665331 1 1 112222222222 2234566666777 77776532
Q ss_pred hhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeccccc
Q 025854 144 ELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFENDEPA 223 (247)
Q Consensus 144 ~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~~~ 223 (247)
.-... ........++|..++|+|+|||+|||++||+++++.++++|+..+.|.+.. .+||+|+||+.......
T Consensus 67 ~~~~~--~~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~~-----~~~Y~r~Gf~~~~~~~~ 139 (411)
T PRK01346 67 LRLTV--PGGAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTASE-----GGIYGRFGYGPATYSQS 139 (411)
T ss_pred ccccc--CCCCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECCc-----hhhHhhCCCeeccceEE
Confidence 10000 001123568999999999999999999999999999999999888887543 36999999998766544
Q ss_pred c
Q 025854 224 W 224 (247)
Q Consensus 224 ~ 224 (247)
+
T Consensus 140 ~ 140 (411)
T PRK01346 140 L 140 (411)
T ss_pred E
Confidence 3
No 50
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=99.23 E-value=2.7e-11 Score=97.05 Aligned_cols=91 Identities=18% Similarity=0.259 Sum_probs=74.5
Q ss_pred EEEEccccCceeeeeehhhhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHH
Q 025854 126 VACINATLPLSQISSVSEELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEP 205 (247)
Q Consensus 126 ~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~ 205 (247)
+++++.+-+.+|+..+... ........|+..|-|.++|||+|||+.||+.+...+.....++|.|+|...|.+
T Consensus 95 i~a~~~~~~~vgf~~Frf~-------vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~N~~ 167 (202)
T KOG2488|consen 95 ICAWNNKSKLVGFTMFRFT-------VDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSRHMRKVMLTVFSENIR 167 (202)
T ss_pred EEEEcCCCceeeEEEEEEE-------cccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHHHhhhheeeeecccch
Confidence 3455544344888887332 223455889999999999999999999999999999988888999999999999
Q ss_pred HHHHHHHCCCEEeccccc
Q 025854 206 AKKLYMKSGFIFENDEPA 223 (247)
Q Consensus 206 A~~fY~k~GF~~~~~~~~ 223 (247)
|++||+++||......+.
T Consensus 168 al~Fy~~~gf~~~~~sp~ 185 (202)
T KOG2488|consen 168 ALGFYHRLGFVVDEESPC 185 (202)
T ss_pred hHHHHHHcCcccCCCCCc
Confidence 999999999998776554
No 51
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=99.20 E-value=5.9e-11 Score=96.31 Aligned_cols=69 Identities=22% Similarity=0.313 Sum_probs=64.3
Q ss_pred eEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcC-CcEEEEEEecCCHHHHHHHHHCCCEEecccccccc
Q 025854 158 RAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWG-ISDLYVHVAFDNEPAKKLYMKSGFIFENDEPAWHA 226 (247)
Q Consensus 158 ~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g-~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~~~~~~ 226 (247)
.+||..++|.|.||++|||+.||+.+.+.+.+.. +..++|+|...|..|+.||++.||+.+...+.+..
T Consensus 89 ~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~~~gF~~~~~~~~~y~ 158 (187)
T KOG3138|consen 89 VIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYEKRGFEIVERLKNYYS 158 (187)
T ss_pred eeEEEeecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHHhcCceEeeccccccc
Confidence 4899999999999999999999999999999887 88999999999999999999999999998776543
No 52
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.19 E-value=1.2e-10 Score=101.96 Aligned_cols=77 Identities=21% Similarity=0.206 Sum_probs=62.9
Q ss_pred eeEEEEE-ccccCceeeeeehhhhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEec
Q 025854 123 FRTVACI-NATLPLSQISSVSEELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAF 201 (247)
Q Consensus 123 ~~~~~~~-~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~ 201 (247)
+.+++.. ++++ +|++.+. ..+|..++|+|+|||+|+|++||+++++.+++.|+..++|.+..
T Consensus 6 ~~~~v~~~~~~i--VG~~~l~---------------~~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~ 68 (297)
T cd02169 6 YTVGIFDDAGEL--IATGSIA---------------GNVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKP 68 (297)
T ss_pred EEEEEEEECCEE--EEEEEec---------------cCEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcc
Confidence 3445554 3566 7777651 12689999999999999999999999999999999999998865
Q ss_pred CCHHHHHHHHHCCCEEec
Q 025854 202 DNEPAKKLYMKSGFIFEN 219 (247)
Q Consensus 202 ~N~~A~~fY~k~GF~~~~ 219 (247)
. +..||+|+||+..+
T Consensus 69 ~---~~~fYek~GF~~~~ 83 (297)
T cd02169 69 K---NAKFFRGLGFKELA 83 (297)
T ss_pred c---HHHHHHHCCCEEec
Confidence 5 36899999999888
No 53
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.14 E-value=8.4e-10 Score=98.06 Aligned_cols=82 Identities=13% Similarity=0.224 Sum_probs=67.2
Q ss_pred ceeEEEEEccccCceeeeeehhhhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEec
Q 025854 122 EFRTVACINATLPLSQISSVSEELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAF 201 (247)
Q Consensus 122 ~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~ 201 (247)
.+.++++.++++ +|++++.. ..|..++|+|+|||+|+|++||+++++.+++.|+..+.|.+..
T Consensus 31 d~~vv~~~~~~l--Vg~g~l~g---------------~~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~ 93 (332)
T TIGR00124 31 EIFIAVYEDEEI--IGCGGIAG---------------NVIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKP 93 (332)
T ss_pred CEEEEEEECCEE--EEEEEEec---------------CEEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECc
Confidence 455566667777 88877621 2488999999999999999999999999999999999998865
Q ss_pred CCHHHHHHHHHCCCEEeccccc
Q 025854 202 DNEPAKKLYMKSGFIFENDEPA 223 (247)
Q Consensus 202 ~N~~A~~fY~k~GF~~~~~~~~ 223 (247)
.| .+||+++||...+....
T Consensus 94 ~~---~~fy~klGF~~i~~~~~ 112 (332)
T TIGR00124 94 EY---AALFEYCGFKTLAEAKD 112 (332)
T ss_pred hH---HHHHHHcCCEEeeeecc
Confidence 54 56999999999877643
No 54
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=99.13 E-value=2.1e-09 Score=86.32 Aligned_cols=145 Identities=17% Similarity=0.196 Sum_probs=96.0
Q ss_pred ceEEecCccchhhHHHHHHHHhhhcccCCCccccchhhhhhhHHHHHHHHHHHhcC---CCceeEEEEEccccCceeeee
Q 025854 64 SLVVDETTAEDQLWAAACLRVRSFHQFDPDSFGVQDHKKHLAEREFEAMKERIAGK---RKEFRTVACINATLPLSQISS 140 (247)
Q Consensus 64 ~v~IR~a~~~D~~~~~a~l~~~~~~~~~p~~f~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~vg~~~ 140 (247)
++.||..++.| ..++..+.-.+|.. ..+ ..+.+++... .....++++.++++ +|-+.
T Consensus 3 ~~~ir~e~~~d-~~~i~~~~~~aF~~--------~~e---------~~~v~~lR~~~~~~~~LslVA~d~g~v--vG~Il 62 (171)
T COG3153 3 MMLIRTETPAD-IPAIEALTREAFGP--------GRE---------AKLVDKLREGGRPDLTLSLVAEDDGEV--VGHIL 62 (171)
T ss_pred ccEEEecChhh-HHHHHHHHHHHhhc--------chH---------HHHHHHHHhcCCcccceeEEEeeCCEE--EEEEE
Confidence 47899999989 66666665555531 111 1122233321 33456778888777 88777
Q ss_pred ehhhhhhhhccCC-CCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEec
Q 025854 141 VSEELCAECKGIG-GDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFEN 219 (247)
Q Consensus 141 ~~~~~~~~~~~~~-~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~ 219 (247)
++.- ... ......-+.-|+|+|+|||||||++|++..++.++..|+..+.+- .+. .+|.++||+...
T Consensus 63 ~s~v------~~~g~~~~~~~LaPLaV~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vl---Gdp---~YY~rfGF~~~~ 130 (171)
T COG3153 63 FSPV------TVGGEELGWLGLAPLAVDPEYQGQGIGSALVREGLEALRLAGASAVVVL---GDP---TYYSRFGFEPAA 130 (171)
T ss_pred EeEE------EecCcccceEEEEeEEEchhhcCCcHHHHHHHHHHHHHHHCCCCEEEEe---cCc---ccccccCcEEcc
Confidence 7433 122 344456677899999999999999999999999999999888664 332 399999999877
Q ss_pred ccccccccccCCcceEEEEccCC
Q 025854 220 DEPAWHARFLDRPRRILLWIGLP 242 (247)
Q Consensus 220 ~~~~~~~~~~~~~~~l~~~~~l~ 242 (247)
...-+.-. +.+...+|-+-|.
T Consensus 131 ~~~l~~p~--~~~~~~fl~~~L~ 151 (171)
T COG3153 131 GAKLYAPG--PVPDERFLALELG 151 (171)
T ss_pred ccccccCC--CCCCceEEEEEcc
Confidence 75443322 2345555554443
No 55
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=99.12 E-value=4.7e-10 Score=94.68 Aligned_cols=69 Identities=22% Similarity=0.187 Sum_probs=61.5
Q ss_pred CCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeccc
Q 025854 152 IGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFENDE 221 (247)
Q Consensus 152 ~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~ 221 (247)
....+..+.|..+||+|+|||+|+|+.|+.++.+..-+.|. +-.|.+..+|..|.+.|+|.||+..|+-
T Consensus 195 ~a~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk-~~~L~~~~~N~~A~~iY~riGF~~~g~~ 263 (268)
T COG3393 195 AAENPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGK-IPCLFVNSDNPVARRIYQRIGFREIGEF 263 (268)
T ss_pred cccCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCC-eeEEEEecCCHHHHHHHHHhCCeecceE
Confidence 34467789999999999999999999999999999888886 4668899999999999999999998853
No 56
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=1.5e-08 Score=81.34 Aligned_cols=81 Identities=19% Similarity=0.179 Sum_probs=65.3
Q ss_pred eeeeeehhhhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHH-cCCcEEEEEEecCCHHHHHHHHHCC
Q 025854 136 SQISSVSEELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQG-WGISDLYVHVAFDNEPAKKLYMKSG 214 (247)
Q Consensus 136 vg~~~~~~~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~-~g~~~i~L~v~~~N~~A~~fY~k~G 214 (247)
+|.+.+... ........++| ...+.|+|+|+|+|+..+..+++++.+ .|+.++.+.|...|++++++++|+|
T Consensus 80 iG~~~~~~~------~~~~~~~~~~i-g~~l~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~~S~rv~ek~G 152 (187)
T COG1670 80 IGVIGLSDI------DRAANGDLAEI-GYWLDPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENEASIRVYEKLG 152 (187)
T ss_pred EEEEEEEEe------ccccccceEEE-EEEEChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCHHHHHHHHHcC
Confidence 777776322 00112345555 567799999999999999999999976 6999999999999999999999999
Q ss_pred CEEeccccc
Q 025854 215 FIFENDEPA 223 (247)
Q Consensus 215 F~~~~~~~~ 223 (247)
|+.++....
T Consensus 153 f~~eg~~~~ 161 (187)
T COG1670 153 FRLEGELRQ 161 (187)
T ss_pred Chhhhhhhh
Confidence 999887544
No 57
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=98.82 E-value=2.3e-08 Score=93.70 Aligned_cols=60 Identities=18% Similarity=0.329 Sum_probs=53.3
Q ss_pred eEEEEEEEEc-----------cCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEecc
Q 025854 158 RAYLSNVCVA-----------KELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFEND 220 (247)
Q Consensus 158 ~~~I~~l~V~-----------p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~ 220 (247)
.++|..|.|- ++|||+|+|++||++++++|++.|+..+.|.. |..|++||+|+||+..+.
T Consensus 446 ~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~G~~~i~v~s---~~~A~~FY~klGf~~~g~ 516 (522)
T TIGR01211 446 TALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEEGSEKILVIS---GIGVREYYRKLGYELDGP 516 (522)
T ss_pred CceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHCCCCEEEEee---CchHHHHHHHCCCEEEcc
Confidence 6788887754 99999999999999999999999999998743 789999999999998765
No 58
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=98.81 E-value=1.5e-08 Score=80.16 Aligned_cols=65 Identities=14% Similarity=0.216 Sum_probs=57.1
Q ss_pred CCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEecc
Q 025854 152 IGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFEND 220 (247)
Q Consensus 152 ~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~ 220 (247)
.....+..++..+.|+.++||+|.|+.||+.++.|++..|+.+++|.+.+. .+||+++||+.-.-
T Consensus 77 i~n~~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~gf~~~yLsT~DQ----~~FYe~lGYe~c~P 141 (225)
T KOG3397|consen 77 LPNRDHALWVESVVVKKDQRGLGFGKFLMKSTEKWMREKGFNEAYLSTDDQ----CRFYESLGYEKCDP 141 (225)
T ss_pred CCCCCceeEEEEEEEehhhccccHHHHHHHHHHHHHHHhhhhheeeecccc----hhhhhhhcccccCc
Confidence 344567899999999999999999999999999999999999999988765 46999999996443
No 59
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=98.65 E-value=3.7e-07 Score=74.93 Aligned_cols=83 Identities=17% Similarity=0.224 Sum_probs=52.1
Q ss_pred CCeEEEEEEEEccCcccCcHHHHHHHHHHHHH-------------------------HHcCCcEEEEEEecCCHHHHHHH
Q 025854 156 FARAYLSNVCVAKELHRNGLGYEIVAKSKLVA-------------------------QGWGISDLYVHVAFDNEPAKKLY 210 (247)
Q Consensus 156 ~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a-------------------------~~~g~~~i~L~v~~~N~~A~~fY 210 (247)
-....|..|+|+|++||+|+|++|++.+.+++ +..+++.+...-. -++.-.+||
T Consensus 88 l~g~RIvRIAvhP~~q~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSFG-~t~~Ll~FW 166 (196)
T PF13718_consen 88 LSGARIVRIAVHPDLQRMGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSFG-ATPELLKFW 166 (196)
T ss_dssp SEEEEEEEEEE-CCC-SSSHHHHHHHHHHHT-----------------------------S-SEEEEEEE---HHHHHHH
T ss_pred hcceeEEEEEEChhhhcCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEeccC-CCHHHHHHH
Confidence 44688999999999999999999999999999 4557776655433 357889999
Q ss_pred HHCCCEEecccccccccccCCcceEEEEccC
Q 025854 211 MKSGFIFENDEPAWHARFLDRPRRILLWIGL 241 (247)
Q Consensus 211 ~k~GF~~~~~~~~~~~~~~~~~~~l~~~~~l 241 (247)
.|.||..+.....-+. .-....+.|-|.|
T Consensus 167 ~k~gf~pv~l~~~~n~--~SGe~S~imlr~l 195 (196)
T PF13718_consen 167 QKNGFVPVYLGQTRNE--ASGEHSAIMLRPL 195 (196)
T ss_dssp HCTT-EEEEE-SS--T--TT---EEEEEEE-
T ss_pred HHCCcEEEEEecCccc--ccCceeeeEEeec
Confidence 9999998776544322 2234556665544
No 60
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=98.59 E-value=6.2e-07 Score=71.24 Aligned_cols=84 Identities=19% Similarity=0.165 Sum_probs=68.4
Q ss_pred cccCceeeeeehhhhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHH
Q 025854 131 ATLPLSQISSVSEELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLY 210 (247)
Q Consensus 131 ~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY 210 (247)
+++ +|++.+-.++.... -...|+| .-.|.|..||+|+|+++|+.+++.|++.|+++|.++|+.+|.++++.-
T Consensus 78 ~~i--vG~i~lRh~Ln~~l-----l~~gGHI-GY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~dN~ASrkvI 149 (174)
T COG3981 78 GQI--VGFINLRHQLNDFL-----LEEGGHI-GYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKDNIASRKVI 149 (174)
T ss_pred CcE--EEEEEeeeecchHH-----HhcCCcc-cceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCCCchhhHHH
Confidence 555 88888854432221 1124666 368999999999999999999999999999999999999999999999
Q ss_pred HHCCCEEecccc
Q 025854 211 MKSGFIFENDEP 222 (247)
Q Consensus 211 ~k~GF~~~~~~~ 222 (247)
++.|=..+.+..
T Consensus 150 ~~NGGile~~~~ 161 (174)
T COG3981 150 EANGGILENEFF 161 (174)
T ss_pred HhcCCEEeEEEc
Confidence 999988776643
No 61
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=98.50 E-value=2.2e-07 Score=66.31 Aligned_cols=64 Identities=23% Similarity=0.277 Sum_probs=58.8
Q ss_pred CeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeccc
Q 025854 157 ARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFENDE 221 (247)
Q Consensus 157 ~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~ 221 (247)
..+++..-++.|+|||||+.+.++....+.+.+.|+. ++.+|..+|+..+++-+++||....-.
T Consensus 18 qtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P-~Y~hv~~~N~~~~r~~~~lg~~~~pc~ 81 (89)
T PF08444_consen 18 QTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFP-FYGHVDEDNEASQRLSKSLGFIFMPCG 81 (89)
T ss_pred ccccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCC-eEeehHhccHHHHHHHHHCCCeecCCc
Confidence 4678889999999999999999999999999999986 889999999999999999999976543
No 62
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=98.49 E-value=8.8e-07 Score=68.41 Aligned_cols=87 Identities=16% Similarity=0.255 Sum_probs=63.2
Q ss_pred eEEEEE-ccccCceeeeeehhhhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcC-CcEEEEEEec
Q 025854 124 RTVACI-NATLPLSQISSVSEELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWG-ISDLYVHVAF 201 (247)
Q Consensus 124 ~~~~~~-~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g-~~~i~L~v~~ 201 (247)
.+.... ++++ ++.+.+... .......-|..+.|.|++||+|+|++||..+++.+.+.. -+.++|..
T Consensus 51 Hl~~~~~~g~L--vAyaRLl~~--------~~~~~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~A-- 118 (155)
T COG2153 51 HLLGWTPDGEL--VAYARLLPP--------GAEYEEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGA-- 118 (155)
T ss_pred eEEEEcCCCeE--EEEEecCCC--------CCCcCceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEeh--
Confidence 333344 5666 676666321 122223569999999999999999999999999998764 34566653
Q ss_pred CCHHHHHHHHHCCCEEeccccc
Q 025854 202 DNEPAKKLYMKSGFIFENDEPA 223 (247)
Q Consensus 202 ~N~~A~~fY~k~GF~~~~~~~~ 223 (247)
......||.++||+..++...
T Consensus 119 -QahLq~fYa~~GFv~~~e~yl 139 (155)
T COG2153 119 -QAHLQDFYASFGFVRVGEEYL 139 (155)
T ss_pred -HHHHHHHHHHhCcEEcCchhh
Confidence 356889999999999888743
No 63
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=98.41 E-value=1.3e-06 Score=56.58 Aligned_cols=59 Identities=20% Similarity=0.352 Sum_probs=46.8
Q ss_pred EccccCceeeeeehhhhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEE
Q 025854 129 INATLPLSQISSVSEELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYV 197 (247)
Q Consensus 129 ~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L 197 (247)
.++++ +|++.+... ......+++..++|+|+|||+|+|++|++.+++++++.|++.+.+
T Consensus 6 ~~~~~--ig~~~~~~~--------~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 6 DDGEI--VGFASLSPD--------GSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred cCCEE--EEEEEEEec--------CCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 34455 677666322 113467899999999999999999999999999999999988876
No 64
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=98.28 E-value=2.5e-05 Score=59.39 Aligned_cols=67 Identities=19% Similarity=0.122 Sum_probs=60.6
Q ss_pred CCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEec--CCHHHHHHHHHCCCEEeccc
Q 025854 155 DFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAF--DNEPAKKLYMKSGFIFENDE 221 (247)
Q Consensus 155 ~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~--~N~~A~~fY~k~GF~~~~~~ 221 (247)
-++..||..+.|....||+|+|++|-+.+.++|+..|+..+..+|.. .|+++..|--.+||..+|..
T Consensus 81 Ye~F~YvDRvVVA~~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a 149 (167)
T COG3818 81 YENFFYVDRVVVASRARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQA 149 (167)
T ss_pred CCceEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhhcCceEccce
Confidence 34578999999999999999999999999999999999888888764 48999999999999998875
No 65
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=98.21 E-value=1.3e-05 Score=62.24 Aligned_cols=66 Identities=18% Similarity=0.173 Sum_probs=58.9
Q ss_pred CCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHc-CCcEEEEEEecCCHHHHHHHHHCCCEEeccc
Q 025854 156 FARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGW-GISDLYVHVAFDNEPAKKLYMKSGFIFENDE 221 (247)
Q Consensus 156 ~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~-g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~ 221 (247)
-..|++.-+.-.|..||+|+|+..+..++.++... ++.+..+.+..+|.+.++||+|++|..+...
T Consensus 105 ~~~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFkk~~f~q~~~n 171 (185)
T KOG4135|consen 105 VITGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFKKFLFTQVFYN 171 (185)
T ss_pred eeeeeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHHHhhheeeeee
Confidence 34688887888999999999999999999999765 8899999999999999999999999987654
No 66
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=98.19 E-value=2.6e-06 Score=60.84 Aligned_cols=44 Identities=32% Similarity=0.437 Sum_probs=41.6
Q ss_pred EEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCC
Q 025854 164 VCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGF 215 (247)
Q Consensus 164 l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF 215 (247)
++|+|+|||+|||++|++.++++++..|+. .|..+..+|++.||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~--------~~~~~~~~~~~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS--------LNRLALEVYEKNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce--------ehHHHHHHHHhcCC
Confidence 999999999999999999999999998875 78899999999999
No 67
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=98.17 E-value=6.3e-06 Score=70.99 Aligned_cols=66 Identities=20% Similarity=0.157 Sum_probs=51.5
Q ss_pred CCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEecccccc
Q 025854 155 DFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFENDEPAW 224 (247)
Q Consensus 155 ~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~~~~ 224 (247)
.....+| +|.++|+|||+|+|+.+..+++..|.++|+... +.+ .|.+++++=+|+||+....-..|
T Consensus 186 ~~~~~EI-~I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P~-WDc--~N~~S~~lA~kLGf~~~~~Y~~Y 251 (265)
T PF12746_consen 186 YENGIEI-DIETHPEYRGKGLATAVAAAFILECLENGLYPS-WDC--HNLASIALAEKLGFHFDFEYTAY 251 (265)
T ss_dssp ETTEEEE-EEEE-CCCTTSSHHHHHHHHHHHHHHHTT-EEE--EE--SSHHHHHHHHHCT--EEEEEEEE
T ss_pred ECCEEEE-EEEECHHhhcCCHHHHHHHHHHHHHHHCCCCcC-eeC--CCHHHHHHHHHcCCcccceeeee
Confidence 3345677 599999999999999999999999999998664 344 69999999999999987765554
No 68
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=98.15 E-value=3.1e-05 Score=54.34 Aligned_cols=54 Identities=17% Similarity=0.184 Sum_probs=42.2
Q ss_pred CCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHC
Q 025854 155 DFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKS 213 (247)
Q Consensus 155 ~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~ 213 (247)
......|....|.|++||||+|++|+++++++++++|.+ | .+.-.-+.++++++
T Consensus 19 ~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~k-v----~p~C~y~~~~~~~h 72 (78)
T PF14542_consen 19 DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLK-V----VPTCSYVAKYFRRH 72 (78)
T ss_dssp SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-E-E----EETSHHHHHHHHH-
T ss_pred CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCE-E----EEECHHHHHHHHhC
Confidence 556788999999999999999999999999999999953 3 24446667777664
No 69
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=98.02 E-value=2.1e-05 Score=76.05 Aligned_cols=83 Identities=20% Similarity=0.229 Sum_probs=63.4
Q ss_pred CeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEecccccccccccCCcceEE
Q 025854 157 ARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFENDEPAWHARFLDRPRRIL 236 (247)
Q Consensus 157 ~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~~~~~~~~~~~~~~l~ 236 (247)
..+.|..|+|+|++|++|||++|++.+.++++ .|+..+...- --++.-.+||.|+||..+...+.-+. .-..+.+.
T Consensus 530 ~G~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~-~~~DwlgvsF-G~t~~L~rFW~rnGF~pVhls~~rn~--~SGeys~i 605 (758)
T COG1444 530 VGWRIVRIAVHPELQRMGIGSRLLALLIEEAR-KGLDWLGVSF-GYTEELLRFWLRNGFVPVHLSPTRNA--SSGEYTAI 605 (758)
T ss_pred ceeeEEEEEeCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeecc-CCCHHHHHHHHHcCeEEEEecCccCc--CCCceeEE
Confidence 35789999999999999999999999999997 4666554432 34588999999999999888766543 22345666
Q ss_pred EEccCCC
Q 025854 237 LWIGLPG 243 (247)
Q Consensus 237 ~~~~l~~ 243 (247)
|-|-|+.
T Consensus 606 ~lkpLs~ 612 (758)
T COG1444 606 VLKPLSD 612 (758)
T ss_pred EEecCCH
Confidence 6666554
No 70
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=97.95 E-value=4.3e-05 Score=58.14 Aligned_cols=85 Identities=18% Similarity=0.187 Sum_probs=56.5
Q ss_pred CCceeEEEEEccccCceeeeeehhhhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEE
Q 025854 120 RKEFRTVACINATLPLSQISSVSEELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHV 199 (247)
Q Consensus 120 ~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v 199 (247)
.....+.+-+|+.+ +|.+.+.. ....+.|..++|.+--||+|+|+.|++++.+.+. ++...++..
T Consensus 36 ~~~~l~aArFNdRl--LgAv~v~~-----------~~~~~~L~~l~VRevTRrRGVG~yLlee~~rq~p--~i~~w~l~~ 100 (128)
T PF12568_consen 36 EGHRLFAARFNDRL--LGAVKVTI-----------SGQQAELSDLCVREVTRRRGVGLYLLEEVLRQLP--DIKHWWLAD 100 (128)
T ss_dssp SSEEEEEEEETTEE--EEEEEEEE-----------ETTEEEEEEEEE-TT-SSSSHHHHHHHHHHHHS---S--EEEE--
T ss_pred cCCeEEEEEechhe--eeeEEEEE-----------cCcceEEeeEEEeeccccccHHHHHHHHHHHHCC--CCcEEEEec
Confidence 34556678899998 77666521 3448999999999999999999999999998873 566666643
Q ss_pred e---cCC-HHHHHHHHHCCCEEec
Q 025854 200 A---FDN-EPAKKLYMKSGFIFEN 219 (247)
Q Consensus 200 ~---~~N-~~A~~fY~k~GF~~~~ 219 (247)
. ..+ ...-.|...+||...+
T Consensus 101 ~~~~~~~~~~~~~Fm~a~GF~~~~ 124 (128)
T PF12568_consen 101 EGVEPQDRAVMAAFMQACGFSAQS 124 (128)
T ss_dssp TT-S--THHHHHHHHHHHT-EE-S
T ss_pred CCCcccchHHHHHHHHHcCccccC
Confidence 3 224 3345788899996644
No 71
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=97.89 E-value=1.5e-05 Score=62.24 Aligned_cols=64 Identities=8% Similarity=0.075 Sum_probs=51.5
Q ss_pred CCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcC-CcEEEEEEecCCHHHHHHHHHCCCEEecc
Q 025854 154 GDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWG-ISDLYVHVAFDNEPAKKLYMKSGFIFEND 220 (247)
Q Consensus 154 ~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g-~~~i~L~v~~~N~~A~~fY~k~GF~~~~~ 220 (247)
...+...|+.++|+|+||.+|.|+.|+..-++..-++- ..++.|.+. ++.+.||+++||+.++.
T Consensus 97 s~g~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h---~pLvPFYEr~gFk~vgp 161 (190)
T KOG4144|consen 97 SGGHNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICH---DPLVPFYERFGFKAVGP 161 (190)
T ss_pred cCCcceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeec---CCccchhHhcCceeecc
Confidence 34456899999999999999999999999887775553 246666654 45788999999998887
No 72
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=97.69 E-value=5.5e-05 Score=66.63 Aligned_cols=60 Identities=20% Similarity=0.215 Sum_probs=51.5
Q ss_pred CCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEecc
Q 025854 156 FARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFEND 220 (247)
Q Consensus 156 ~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~ 220 (247)
-..+.|..|++.|.|||+|..++||.+.++..++.|+....|+- . ..+||+|+||+.-..
T Consensus 68 l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L~P--~---s~~iYrKfGye~asn 127 (389)
T COG4552 68 LPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSALHP--F---SGGIYRKFGYEYASN 127 (389)
T ss_pred eeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEecc--C---chhhHhhccccccce
Confidence 34678999999999999999999999999999999998887762 3 356999999996554
No 73
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=97.53 E-value=0.00028 Score=51.61 Aligned_cols=44 Identities=18% Similarity=0.205 Sum_probs=38.8
Q ss_pred CCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEE
Q 025854 155 DFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVH 198 (247)
Q Consensus 155 ~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~ 198 (247)
.++...|..-+|.+++||||+|++|++++++.|++.|..-+=++
T Consensus 36 ~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~kiiP~C 79 (99)
T COG2388 36 GENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLKIIPLC 79 (99)
T ss_pred CCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCeEcccc
Confidence 55688999999999999999999999999999999997655444
No 74
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=97.45 E-value=0.00083 Score=50.36 Aligned_cols=77 Identities=14% Similarity=0.134 Sum_probs=55.4
Q ss_pred EEccccCceeeeeehhhhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHH
Q 025854 128 CINATLPLSQISSVSEELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAK 207 (247)
Q Consensus 128 ~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~ 207 (247)
.+++.. +|++-+... ...+.+-..-|..+++...|||+|+|++..+++...++ |. ..+.+...|.+|+
T Consensus 43 ~~~~~~--igf~l~L~~------~~~~~~iD~~~~efFIi~k~~~~GvGR~aaK~If~~~~--g~--w~Va~i~EN~PA~ 110 (143)
T COG5628 43 RIGGLP--VGFALVLDL------AHSPTPIDRAVAEFFIVRKHRRRGVGRAAAKAIFGSAW--GV--WQVATVRENTPAR 110 (143)
T ss_pred EECCce--eeeeeeecc------cCCCCcccccchheEeeehhhccchhHHHHHHHHHHhh--ce--EEEEEeccCChhH
Confidence 445554 887776433 22233333457788999999999999999988876644 42 5566778999999
Q ss_pred HHHHHCCCE
Q 025854 208 KLYMKSGFI 216 (247)
Q Consensus 208 ~fY~k~GF~ 216 (247)
+|+++.-..
T Consensus 111 ~fwK~~~~t 119 (143)
T COG5628 111 AFWKRVAET 119 (143)
T ss_pred HHHHhhhcc
Confidence 999998766
No 75
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=97.38 E-value=0.0013 Score=56.87 Aligned_cols=61 Identities=20% Similarity=0.299 Sum_probs=52.9
Q ss_pred EEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeccccc
Q 025854 160 YLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFENDEPA 223 (247)
Q Consensus 160 ~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~~~ 223 (247)
-|..++|++.+||-|+.-+|+.++++.+-++|...+.+.+-..+ .+||+.+||........
T Consensus 58 vikcvAvs~s~qGeGl~lkl~TeLin~ay~~g~~hLFiyTKp~~---~~lFk~~GF~~i~~~~~ 118 (352)
T COG3053 58 VIKCVAVSESLQGEGLALKLVTELINLAYERGRTHLFIYTKPEY---AALFKQCGFSEIASAEN 118 (352)
T ss_pred eeEEEEechhcccccHHHHHHHHHHHHHHHcCCceEEEEechhH---HHHHHhCCceEeeccCc
Confidence 47789999999999999999999999999999988888776554 56999999998776544
No 76
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=0.016 Score=48.27 Aligned_cols=142 Identities=18% Similarity=0.113 Sum_probs=90.2
Q ss_pred eEEecCccchhhHHHHHHHHhhhcccCCCccccchhhhhhhHHHHHHHHHHHhcCCCceeEEEEEcc-ccCceeeeeehh
Q 025854 65 LVVDETTAEDQLWAAACLRVRSFHQFDPDSFGVQDHKKHLAEREFEAMKERIAGKRKEFRTVACINA-TLPLSQISSVSE 143 (247)
Q Consensus 65 v~IR~a~~~D~~~~~a~l~~~~~~~~~p~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~vg~~~~~~ 143 (247)
++||+.+..+|++.+..++..+|....-+.+..+ . +. .+. ...+..++++..+ .+ ||+.--..
T Consensus 3 vvvrrl~dp~el~~~~dV~~~aWg~~d~~~~~~d---------~---i~-al~-~~GGlvlgAf~~dg~l--VGls~G~p 66 (266)
T COG3375 3 VVVRRLTDPAELDEAEDVQASAWGSEDRDGAPAD---------T---IR-ALR-YHGGLVLGAFSADGRL--VGLSYGYP 66 (266)
T ss_pred eeEEecCCHHHHHHHHHHHHHHhCccccccchHH---------H---HH-HHH-hcCCeEEEEEcCCCcE--EEEEeccC
Confidence 7889999888899988888877744211111111 1 11 222 2445566777654 44 66443100
Q ss_pred hhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHH-HHHCCCEEecccc
Q 025854 144 ELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKL-YMKSGFIFENDEP 222 (247)
Q Consensus 144 ~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~f-Y~k~GF~~~~~~~ 222 (247)
.......+-|-+.++|.|++|+.|+|-+|=..=-+++.++|++.+.++-+.-|.-..+| ..|+|-....-.+
T Consensus 67 -------g~r~g~~y~ySH~~gV~e~~k~sglg~aLK~~Qre~a~~~G~tli~WTfDPl~alNA~fNi~KLGa~artYi~ 139 (266)
T COG3375 67 -------GGRGGSLYLYSHMLGVREEVKGSGLGVALKMKQRERALSMGYTLIAWTFDPLNALNARFNISKLGAIARTYIK 139 (266)
T ss_pred -------CcCCCceeeeeeehhccccccccchhhhhHHHHHHHHHhcCeeeEEEecccchhhhhhcchhhhceeEEEeec
Confidence 01123335666779999999999999999988889999999998888777666432222 5677766554455
Q ss_pred ccccccc
Q 025854 223 AWHARFL 229 (247)
Q Consensus 223 ~~~~~~~ 229 (247)
+|.+..-
T Consensus 140 nfYg~m~ 146 (266)
T COG3375 140 NFYGEMA 146 (266)
T ss_pred cccchhc
Confidence 5555444
No 77
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=96.89 E-value=0.0015 Score=59.63 Aligned_cols=51 Identities=20% Similarity=0.384 Sum_probs=44.2
Q ss_pred ccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEecc
Q 025854 167 AKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFEND 220 (247)
Q Consensus 167 ~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~ 220 (247)
...||.+|+|++||+++++.|++.|..+|.+... ..++.+|+|+||+..|.
T Consensus 459 ~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~viSg---iG~ReYy~k~GY~~~gp 509 (515)
T COG1243 459 EDEWQHRGYGRELLEEAERIAREEGAKKILVISG---IGVREYYRKLGYELDGP 509 (515)
T ss_pred cchhhcccHHHHHHHHHHHHHHhhccccEEEEec---ccHHHHHHHhCccccCC
Confidence 4789999999999999999999999888876543 56899999999998764
No 78
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=96.80 E-value=0.026 Score=45.91 Aligned_cols=107 Identities=10% Similarity=0.030 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHhcCCCceeEEEEEccccCceeeeeehhhhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHH
Q 025854 105 AEREFEAMKERIAGKRKEFRTVACINATLPLSQISSVSEELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSK 184 (247)
Q Consensus 105 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~ 184 (247)
..+++..|.+.+. +......+|+-+....++...+..- .......+.+.-++...+++|+|||+|+++.+-+.+.
T Consensus 30 k~~Di~~wk~sf~--~~Y~l~~~~~KgT~~via~~~~~~~---~~l~~~~d~pl~~~G~~w~~p~yRg~~~~kl~~~~~~ 104 (181)
T PF06852_consen 30 KRNDIKLWKESFD--DDYWLVLTCLKGTDRVIATVHLIRF---DPLNPSPDKPLQFIGFFWIDPEYRGKGIMKLQDDICM 104 (181)
T ss_pred cHHHHHHHHHhhc--cCeEEEEEEEcCCCcEEEEEEEEEe---ccCCCCCCCCeEEEeeeeeCCcccCcchHHHHHHHHH
Confidence 3455556665554 2243445666665433554444210 0001122456788999999999999999975555555
Q ss_pred HHHHHcCCcEEEEEEecCCHHHHHHHHH-CCCEEecc
Q 025854 185 LVAQGWGISDLYVHVAFDNEPAKKLYMK-SGFIFEND 220 (247)
Q Consensus 185 ~~a~~~g~~~i~L~v~~~N~~A~~fY~k-~GF~~~~~ 220 (247)
+..+..+-. ..+ ..|..+.++|.+ +||...+.
T Consensus 105 ~~~~~~~~N-~~~---~~~~~~~~~w~k~~G~~~~~h 137 (181)
T PF06852_consen 105 DELDSVDDN-SVA---QGNVKMSNFWHKMFGFDDYGH 137 (181)
T ss_pred HHhccCCCc-eee---ecCHHHHHHHHHHhCCCCCcc
Confidence 554443322 222 356788999998 59887666
No 79
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=96.79 E-value=0.039 Score=41.85 Aligned_cols=117 Identities=12% Similarity=-0.025 Sum_probs=69.6
Q ss_pred ceEEecCccchhhHHHHHHHHhhhcccCCCccccchhhhhhhHHHHHHHHHHHhcCCCceeEEEEEccccCceeeeeehh
Q 025854 64 SLVVDETTAEDQLWAAACLRVRSFHQFDPDSFGVQDHKKHLAEREFEAMKERIAGKRKEFRTVACINATLPLSQISSVSE 143 (247)
Q Consensus 64 ~v~IR~a~~~D~~~~~a~l~~~~~~~~~p~~f~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~vg~~~~~~ 143 (247)
.+.++.+...+++...-.+....+.. .+..+.. .....-++.+...+........+++..++++ ++.....
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~l~~~~~~g~~--va~~~~~- 89 (142)
T PF13480_consen 19 GVRFEVATDPADLEAFYELYRESWAR-RHGGFAP-----PFSRDFFRDLLRSLAESGRLRLFVLYDGGEP--VAFALGF- 89 (142)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHHHhh-hhCCCCC-----cchHHHHHHHHHhhccCCCEEEEEEEECCEE--EEEEEEE-
Confidence 36666665555566655554443333 1011111 1223344555555533333334444455555 4443321
Q ss_pred hhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEE
Q 025854 144 ELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHV 199 (247)
Q Consensus 144 ~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v 199 (247)
. .....+.....++|+|+..++|..|+.+++++|.+.|++.+-+..
T Consensus 90 --------~--~~~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g~~~~d~g~ 135 (142)
T PF13480_consen 90 --------R--HGGTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAIERGLRYFDFGG 135 (142)
T ss_pred --------E--ECCEEEEEEEEECHhhHhCCHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 1 233667778888999999999999999999999999998887754
No 80
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=96.77 E-value=0.0014 Score=44.73 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=26.1
Q ss_pred EEEEEEEEccCcccCcHHHHHHHHHHHHH
Q 025854 159 AYLSNVCVAKELHRNGLGYEIVAKSKLVA 187 (247)
Q Consensus 159 ~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a 187 (247)
.-|..|+|+|.+|++||+++||+.+.+..
T Consensus 6 ~GI~RIWV~~~~RR~GIAt~Lld~ar~~~ 34 (70)
T PF13880_consen 6 CGISRIWVSPSHRRKGIATRLLDAARENF 34 (70)
T ss_pred EEeEEEEeChhhhhhhHHHHHHHHHHHhc
Confidence 45889999999999999999999998764
No 81
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=96.07 E-value=0.22 Score=42.41 Aligned_cols=63 Identities=19% Similarity=0.274 Sum_probs=51.0
Q ss_pred CCCeEEEEEEEEccCcccC--------c--------------------HHHHHHHHHHHHHHHcCCcEEEEEEecCCHHH
Q 025854 155 DFARAYLSNVCVAKELHRN--------G--------------------LGYEIVAKSKLVAQGWGISDLYVHVAFDNEPA 206 (247)
Q Consensus 155 ~~~~~~I~~l~V~p~~Rg~--------G--------------------iG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A 206 (247)
..+.+++..++|+++||++ | +...|+..+.++|..+|++.++..+. ..-
T Consensus 108 ~~~i~E~SRf~V~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~---~~l 184 (241)
T TIGR03694 108 RSRIAEVSRLAVSKDFRRRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALSSANGITHWYAIME---PRL 184 (241)
T ss_pred CCceEEeehheECHhHhCCcccccccccccccccccccchhhcccCchHHHHHHHHHHHHHHHCCCcEEEEEeC---HHH
Confidence 3578999999999999974 2 55779999999999999988876554 457
Q ss_pred HHHHHHCCCEEecc
Q 025854 207 KKLYMKSGFIFEND 220 (247)
Q Consensus 207 ~~fY~k~GF~~~~~ 220 (247)
.+++.++|+.....
T Consensus 185 ~r~l~r~G~~~~~l 198 (241)
T TIGR03694 185 ARLLSRFGIQFRQV 198 (241)
T ss_pred HHHHHHhCCceEEc
Confidence 78999999875444
No 82
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=96.07 E-value=0.01 Score=52.58 Aligned_cols=50 Identities=16% Similarity=0.372 Sum_probs=41.1
Q ss_pred cCcccCcHHHHHHHHHHHHHHH-cCCcEEEEEEecCCHHHHHHHHHCCCEEecc
Q 025854 168 KELHRNGLGYEIVAKSKLVAQG-WGISDLYVHVAFDNEPAKKLYMKSGFIFEND 220 (247)
Q Consensus 168 p~~Rg~GiG~~Ll~~~~~~a~~-~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~ 220 (247)
..||.||+|..||++++..|++ +|-.+|.+... ...+.+|+|+||+..|.
T Consensus 497 ~KfQHQG~GtLLmeEAERIAr~EHgS~KiavISG---VGtR~YY~klGY~LdGP 547 (554)
T KOG2535|consen 497 TKFQHQGFGTLLMEEAERIAREEHGSGKIAVISG---VGTRNYYRKLGYELDGP 547 (554)
T ss_pred hhhhhcchhhHHHHHHHHHHHHhcCCCceEEEec---cchHHHHHhhCeeecCh
Confidence 3699999999999999999975 48888877543 34677999999998764
No 83
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=95.98 E-value=0.18 Score=45.13 Aligned_cols=144 Identities=13% Similarity=0.096 Sum_probs=68.8
Q ss_pred ceEEecCccchhhHHHHHHHHhhhcccCCCccccchhhhhhhHHHHHHHHHHHhc------CCCceeEEEEEc--cccCc
Q 025854 64 SLVVDETTAEDQLWAAACLRVRSFHQFDPDSFGVQDHKKHLAEREFEAMKERIAG------KRKEFRTVACIN--ATLPL 135 (247)
Q Consensus 64 ~v~IR~a~~~D~~~~~a~l~~~~~~~~~p~~f~~~~~~~~~~~~~~~~l~~~l~~------~~~~~~~~~~~~--~~~~~ 135 (247)
+++||+++.+| ++++..|...+- + .|..-..++....+.++.-.+.+++ .+..|.++.... +++
T Consensus 1 M~viRp~~~~D-l~aL~~LA~~sg----~-G~TsLP~d~~~L~~rI~~S~~sFa~~~~~~~~~~~YlfVLED~~tg~v-- 72 (342)
T PF04958_consen 1 MLVIRPARPSD-LDALYALARESG----P-GFTSLPPDREALAERIERSERSFAGRDVDFPGDEGYLFVLEDTETGEV-- 72 (342)
T ss_dssp -EEEEE--GGG-HHHHHHHHHHS-----T-T-TTS-S-HHHHHHHHHHHHHHHH-TT----S--EEEEEEEETTT--E--
T ss_pred CeEEecCchhh-HHHHHHHHHHcC----C-CcccCCCCHHHHHHHHHHHHHHhhccccCCCCccceEEEEEecCCCcE--
Confidence 47899999999 777666655432 1 1211111111222222222222211 134566666543 344
Q ss_pred eeeeeehhhhhhhhc--------------------------cCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHH
Q 025854 136 SQISSVSEELCAECK--------------------------GIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQG 189 (247)
Q Consensus 136 vg~~~~~~~~~~~~~--------------------------~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~ 189 (247)
+|+.++.-....... ...+-....+|..++++|+||+.|.|+.|-+.-.-+..+
T Consensus 73 vGts~I~a~vG~~~PfY~yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~~G~lLSr~RfLFiA~ 152 (342)
T PF04958_consen 73 VGTSAIEAAVGLDEPFYSYRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGGNGRLLSRSRFLFIAQ 152 (342)
T ss_dssp EEEEEEESSTTSSS---EEEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSHHHHHHHHHHHHHHHH
T ss_pred EEEEeEEeccCCCCCcEEEEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCchHHHHHHHHHHHHHh
Confidence 777666322111100 112334467999999999999999999998877666543
Q ss_pred c--CC-cEEEEEE---ecCCHHHHHHHHHCCCE
Q 025854 190 W--GI-SDLYVHV---AFDNEPAKKLYMKSGFI 216 (247)
Q Consensus 190 ~--g~-~~i~L~v---~~~N~~A~~fY~k~GF~ 216 (247)
. .+ +++.-+. ... ..--.||+.+|=+
T Consensus 153 ~~~rF~~~viAElrG~~De-~G~SPFWdalG~~ 184 (342)
T PF04958_consen 153 HRERFADRVIAELRGVSDE-DGRSPFWDALGRH 184 (342)
T ss_dssp -GGGS-SEEEEE--B---T-T---HHHHHTGGG
T ss_pred ChhhcchheeeeccCCcCC-CCCCchHHHhhcc
Confidence 3 23 3444431 111 1234488877744
No 84
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.95 E-value=0.039 Score=53.14 Aligned_cols=86 Identities=22% Similarity=0.273 Sum_probs=60.6
Q ss_pred CeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcC--Cc-----------EE----------------------------
Q 025854 157 ARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWG--IS-----------DL---------------------------- 195 (247)
Q Consensus 157 ~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g--~~-----------~i---------------------------- 195 (247)
..+.|-.|+|+|+|+++|+|++-++.+.++...++ +. ++
T Consensus 613 ~GaRIVRIAvhP~y~~MGYGsrAvqLL~~y~eG~~~~i~e~~~~~~~~~k~v~e~~~vsllee~i~pR~~lppLL~~L~e 692 (1011)
T KOG2036|consen 613 SGARIVRIAVHPEYQKMGYGSRAVQLLTDYFEGKFTSISEDVLAVDHSIKRVEEAEKVSLLEEQIKPRKDLPPLLLKLSE 692 (1011)
T ss_pred cCceEEEEEeccchhccCccHHHHHHHHHHHhccCCCccccccccCccccccchhhhhhhhhhhcccccCCCceeeEccc
Confidence 45789999999999999999999999988875432 11 00
Q ss_pred -------EEEEecC-CHHHHHHHHHCCCEEecccccccccccCCcceEEEEccCCCC
Q 025854 196 -------YVHVAFD-NEPAKKLYMKSGFIFENDEPAWHARFLDRPRRILLWIGLPGT 244 (247)
Q Consensus 196 -------~L~v~~~-N~~A~~fY~k~GF~~~~~~~~~~~~~~~~~~~l~~~~~l~~~ 244 (247)
|+.|.-. ...-.+||+|.||.+++....-+. ...++.+.|-|.|.+.
T Consensus 693 r~perldylGvSfGLT~~L~kFWk~~gF~PvylrQt~n~--lTGEHtcimLk~L~~~ 747 (1011)
T KOG2036|consen 693 RPPERLDYLGVSFGLTPSLLKFWKKNGFVPVYLRQTSND--LTGEHTCIMLKTLEGD 747 (1011)
T ss_pred CCCcccceeeecccCCHHHHHHHHhcCceeEEeeccccc--cccceeEEEEecCCCc
Confidence 1122222 256789999999998886543221 3446788898887744
No 85
>PRK10456 arginine succinyltransferase; Provisional
Probab=95.69 E-value=0.055 Score=48.23 Aligned_cols=31 Identities=13% Similarity=0.274 Sum_probs=25.0
Q ss_pred CCeEEEEEEEEccCcccCcHHHHHHHHHHHH
Q 025854 156 FARAYLSNVCVAKELHRNGLGYEIVAKSKLV 186 (247)
Q Consensus 156 ~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~ 186 (247)
....+|..++++|+||+.|.|+.|-+.-.-+
T Consensus 117 tG~sElctLfl~p~~R~~~~G~LLSr~RfLF 147 (344)
T PRK10456 117 TGSSELCTLFLDPDWRKEGNGYLLSKSRFMF 147 (344)
T ss_pred CCCceeEEEEECHHHcCCCchhHHHHHHHHH
Confidence 3457899999999999999999887654443
No 86
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=95.68 E-value=0.025 Score=42.55 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=42.7
Q ss_pred EEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHC-CCE
Q 025854 160 YLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKS-GFI 216 (247)
Q Consensus 160 ~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~-GF~ 216 (247)
.|.+++|++..||+|+|++|++.+++. .++..-.+.++...+.-++|.+|+ |-+
T Consensus 48 cvLDFyVhes~QR~G~Gk~LF~~ML~~---e~~~p~~~a~DrPS~Kll~Fl~Khy~L~ 102 (120)
T PF05301_consen 48 CVLDFYVHESRQRRGYGKRLFDHMLQE---ENVSPHQLAIDRPSPKLLSFLKKHYGLQ 102 (120)
T ss_pred eeeeEEEEeceeccCchHHHHHHHHHH---cCCCcccceecCCcHHHHHHHHHhcCCC
Confidence 677899999999999999999999865 355555666776777788888874 443
No 87
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.48 E-value=0.049 Score=50.43 Aligned_cols=64 Identities=13% Similarity=0.176 Sum_probs=55.0
Q ss_pred CCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEe--cCCHHHHHHHHHCCCEEec
Q 025854 156 FARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVA--FDNEPAKKLYMKSGFIFEN 219 (247)
Q Consensus 156 ~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~--~~N~~A~~fY~k~GF~~~~ 219 (247)
...+.|..+...-..=|++|-++||..+++.|...|+..+...-. ..|.+...||+++||+..+
T Consensus 484 ~~~w~IDt~lmSCRVlgRkvE~~l~~~~~e~A~~~gi~tir~~Y~pt~kN~pv~~FyE~mgf~l~~ 549 (574)
T COG3882 484 ESEWFIDTFLMSCRVLGRKVEQRLMNSLEEQALSEGINTIRGYYIPTEKNAPVSDFYERMGFKLKG 549 (574)
T ss_pred CCeEEhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeEecccccCCcHHHHHHHhcccccc
Confidence 356778888888888899999999999999999999998888654 4589999999999999555
No 88
>PRK14852 hypothetical protein; Provisional
Probab=95.26 E-value=0.14 Score=51.75 Aligned_cols=83 Identities=14% Similarity=0.066 Sum_probs=66.2
Q ss_pred CCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHH-CCCEEecccccccccccCCc
Q 025854 154 GDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMK-SGFIFENDEPAWHARFLDRP 232 (247)
Q Consensus 154 ~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k-~GF~~~~~~~~~~~~~~~~~ 232 (247)
.....+++..++++++.|.+-+=-.|++.+..++...++..+...|.... ..||++ +||+..++...+. +++.|
T Consensus 117 ~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~dd~~i~VnPkH---~~FY~r~l~f~~ig~~r~~p--~VnaP 191 (989)
T PRK14852 117 QGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEVDDILVTVNPKH---VKFYTDIFLFKPFGEVRHYD--TVDAP 191 (989)
T ss_pred cCCeEEeeehheechhhcccchhHHHHHHHHHHHHHcCCCeEEEEECcch---HHHHHHHhCCccccccccCC--CCCcc
Confidence 45568999999999988888777788899988888889998988887665 569996 7999999876665 34555
Q ss_pred ceEEEEccCC
Q 025854 233 RRILLWIGLP 242 (247)
Q Consensus 233 ~~l~~~~~l~ 242 (247)
.++|+-+|+
T Consensus 192 -Avll~~dl~ 200 (989)
T PRK14852 192 -AVALRIDLH 200 (989)
T ss_pred -hhheecCHH
Confidence 777777663
No 89
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=94.91 E-value=0.12 Score=44.44 Aligned_cols=64 Identities=16% Similarity=0.212 Sum_probs=52.8
Q ss_pred cHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEecccccccccccCCcceEEEEccCCCC
Q 025854 174 GLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFENDEPAWHARFLDRPRRILLWIGLPGT 244 (247)
Q Consensus 174 GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~~~~~~~~~~~~~~l~~~~~l~~~ 244 (247)
|-...|++.+.+.|++.|+.+|...|...+ ..+|++.||..++..+.+ |-| ...++|-+-|.++
T Consensus 21 ~~~~~~~~~~~~~a~~~~~~ki~~~~~~~~---~~~~~~~g~~~e~~i~~~---f~g-~~~~~~~~~~~~~ 84 (266)
T TIGR03827 21 NDVEALIPDLDALAKKEGYTKIIAKVPGSD---KPLFEERGYLEEAKIPGY---FNG-HDAYFMSKYLDED 84 (266)
T ss_pred ccHHHHHHHHHHHHHHcCCcEEEEEccHHH---HHHHHHCCCeEEEecccc---cCC-CceEEEEEcCchH
Confidence 448899999999999999999999887664 779999999999999874 333 5678888776653
No 90
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=94.88 E-value=0.81 Score=37.29 Aligned_cols=66 Identities=18% Similarity=0.206 Sum_probs=50.5
Q ss_pred CCCCeEEEEEEEEccCccc------CcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEecccc
Q 025854 154 GDFARAYLSNVCVAKELHR------NGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFENDEP 222 (247)
Q Consensus 154 ~~~~~~~I~~l~V~p~~Rg------~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~~ 222 (247)
.....+++..++|+++.++ .-+...|+..+.++|.++|++.+...+. ..-.+++++.||......+
T Consensus 86 ~~~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~e~a~~~gi~~~v~V~~---~~~~r~l~r~G~~~~~lG~ 157 (182)
T PF00765_consen 86 RSPDVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMVEFALSNGIRHIVGVVD---PAMERILRRAGWPVRRLGP 157 (182)
T ss_dssp SSTTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHHHHHHCTT-SEEEEEEE---HHHHHHHHHCT-EEEESSE
T ss_pred CCCcceeeeEEEEcccccccccccccHHHHHHHHHHHHHHHHCCCCEEEEEEC---hHHHHHHHHcCCceEECCC
Confidence 3467899999999998543 2478899999999999999999876554 5679999999999765544
No 91
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=94.85 E-value=0.19 Score=36.81 Aligned_cols=45 Identities=13% Similarity=0.147 Sum_probs=37.8
Q ss_pred CCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHH
Q 025854 156 FARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEP 205 (247)
Q Consensus 156 ~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~ 205 (247)
....||..++|.+..||+|+|..|++.+.+. ..++...+..+|+.
T Consensus 32 ~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d-----~~~L~Wrsr~~n~~ 76 (99)
T cd04264 32 NGVPYLDKFAVSSSAQGEGTSDALWRRLRRD-----FPKLFWRSRKTNPI 76 (99)
T ss_pred CCceEEEEEEEchhhhhcChHHHHHHHHHhh-----CCceEEEeCCCCcc
Confidence 4578999999999999999999999988755 46687788877753
No 92
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=94.59 E-value=0.24 Score=36.30 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=37.3
Q ss_pred CCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHH
Q 025854 156 FARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEP 205 (247)
Q Consensus 156 ~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~ 205 (247)
....||..++|.+..||+|+|..|++.+.+. +.++...+..+|+.
T Consensus 32 ~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d-----~~~L~Wrsr~~n~~ 76 (99)
T cd04265 32 DGVPYLDKFAVSSSAQGEGTGEALWRRLRRD-----FPKLFWRSRSTNPI 76 (99)
T ss_pred CCceEEEEEEEchhhhhcChHHHHHHHHHhh-----CCceEEEeCCCCcc
Confidence 3578999999999999999999999988755 45677777777753
No 93
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=94.36 E-value=0.017 Score=52.74 Aligned_cols=63 Identities=19% Similarity=0.197 Sum_probs=46.8
Q ss_pred eEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEE-----EecCCHHHHHHHHHCCCEEecc
Q 025854 158 RAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVH-----VAFDNEPAKKLYMKSGFIFEND 220 (247)
Q Consensus 158 ~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~-----v~~~N~~A~~fY~k~GF~~~~~ 220 (247)
.+.|..+.|||+||+-|+|.+-+..+.+|..++.+..+.-. +......=-.|+++.||+....
T Consensus 241 aariarvvvhpdyr~dglg~~sv~~a~ewI~eRriPEmr~rkHlvetiaqmarynpffe~~gfkylwd 308 (593)
T COG2401 241 AARIARVVVHPDYRADGLGQLSVIAALEWIIERRIPEMRPRKHLVETIAQMARYNPFFEKVGFKYLWD 308 (593)
T ss_pred hhheeEEEeccccccCccchhHHHHHHHHHHHhhChhhhhhhhHHHHHHHHHhcCchhhhhceeeeee
Confidence 46899999999999999999999999999988866544332 1111111234999999996443
No 94
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=94.24 E-value=0.22 Score=44.31 Aligned_cols=31 Identities=13% Similarity=0.184 Sum_probs=25.2
Q ss_pred CCeEEEEEEEEccCcccCcHHHHHHHHHHHH
Q 025854 156 FARAYLSNVCVAKELHRNGLGYEIVAKSKLV 186 (247)
Q Consensus 156 ~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~ 186 (247)
....+|..++++|+||+.|.|+.|-+.-.-+
T Consensus 115 tG~sElctLfL~p~~R~~~~G~LLSr~RfLF 145 (335)
T TIGR03243 115 TGSSELCTLFLDPDYRKGGNGRLLSRSRFLF 145 (335)
T ss_pred CCCeeeEEEEECHHHcCCCchhhHHHHHHHH
Confidence 3457899999999999999999887655443
No 95
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=94.03 E-value=0.32 Score=43.35 Aligned_cols=31 Identities=13% Similarity=0.111 Sum_probs=25.1
Q ss_pred CCeEEEEEEEEccCcccCcHHHHHHHHHHHH
Q 025854 156 FARAYLSNVCVAKELHRNGLGYEIVAKSKLV 186 (247)
Q Consensus 156 ~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~ 186 (247)
....+|..++++|+||+-|.|+.|-+.-.-+
T Consensus 116 tG~sElctLfL~p~~R~~~~G~lLSr~RfLF 146 (336)
T TIGR03245 116 TGSSLLCSFYVDPRLRKTEAAELLSRARLLF 146 (336)
T ss_pred CCCeeeEEEEECHHHcCCCchhHHHHHHHHH
Confidence 3457899999999999999999887655443
No 96
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=93.96 E-value=0.21 Score=44.44 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=24.3
Q ss_pred CCeEEEEEEEEccCcccCcHHHHHHHHHHH
Q 025854 156 FARAYLSNVCVAKELHRNGLGYEIVAKSKL 185 (247)
Q Consensus 156 ~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~ 185 (247)
....+|..++++|+||+.|.|+.|-+.-.-
T Consensus 115 tG~SElctLfL~p~~R~~~~G~LLSr~RfL 144 (336)
T TIGR03244 115 TGYSELCTLFLDPDYRKGGNGRLLSKSRFL 144 (336)
T ss_pred CCCeeeEEEEECHHHcCCcchhhHHHHHHH
Confidence 345789999999999999999988665443
No 97
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=93.31 E-value=0.36 Score=39.44 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=29.3
Q ss_pred eEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCC
Q 025854 158 RAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGI 192 (247)
Q Consensus 158 ~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~ 192 (247)
.-.+.-|.|.|.||++|+|+.|++..-+.++..|.
T Consensus 80 ~~NLsCIl~lP~yQrkGyG~~LI~fSY~LSr~e~~ 114 (188)
T PF01853_consen 80 NNNLSCILTLPPYQRKGYGRFLIDFSYELSRREGK 114 (188)
T ss_dssp -EEESEEEE-GGGTTSSHHHHHHHHHHHHHHHTTS
T ss_pred CeeEeehhhcchhhhcchhhhhhhhHHHHhhccCc
Confidence 45678899999999999999999999999887653
No 98
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=92.99 E-value=0.99 Score=37.56 Aligned_cols=66 Identities=14% Similarity=0.152 Sum_probs=51.4
Q ss_pred CCCCeEEEEEEEEccCcccC---c----HHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEecccc
Q 025854 154 GDFARAYLSNVCVAKELHRN---G----LGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFENDEP 222 (247)
Q Consensus 154 ~~~~~~~I~~l~V~p~~Rg~---G----iG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~~ 222 (247)
...+.+++..++|++++++. + +...|+..+.+++..+|++.+...+. ..-.+++.++||......+
T Consensus 95 ~~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~---~~~~r~l~r~G~~~~~lG~ 167 (207)
T PRK13834 95 AHPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSMANGYTEIVTATD---LRFERILARAGWPMQRLGE 167 (207)
T ss_pred CCCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHHHCCCCEEEEEEC---HHHHHHHHHcCCCeEECCC
Confidence 35678999999999986422 2 66789999999999999998866554 3567799999998654433
No 99
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=92.78 E-value=0.86 Score=36.23 Aligned_cols=65 Identities=14% Similarity=0.086 Sum_probs=44.5
Q ss_pred eeEEEEEc--cccCceeeeeehhhhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCC
Q 025854 123 FRTVACIN--ATLPLSQISSVSEELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGI 192 (247)
Q Consensus 123 ~~~~~~~~--~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~ 192 (247)
|..++... +++ +|+++-...-+. .........+|.-|||++++|.++++--|++++..++...|+
T Consensus 78 whiGVR~~~~~kL--vgfIsaip~~ir---v~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~gI 144 (162)
T PF01233_consen 78 WHIGVRVKSSKKL--VGFISAIPATIR---VRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQGI 144 (162)
T ss_dssp GEEEEEETTTTEE--EEEEEEEEEEEE---ETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT-
T ss_pred eEEEEEECCCCEE--EEEEccceEEEE---EeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhcCc
Confidence 45555553 455 776664221111 122234568999999999999999999999999999998886
No 100
>PHA01733 hypothetical protein
Probab=91.25 E-value=0.54 Score=37.03 Aligned_cols=82 Identities=16% Similarity=0.062 Sum_probs=49.5
Q ss_pred EEccccCceeeeeehhhhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHH-cCCcEEEEEEecCCHHH
Q 025854 128 CINATLPLSQISSVSEELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQG-WGISDLYVHVAFDNEPA 206 (247)
Q Consensus 128 ~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~-~g~~~i~L~v~~~N~~A 206 (247)
..++++ +++.++..+ ...+.|.+.-|+.+.=.+ +=+..+.++..+..+ ..+..++=.|+..|..+
T Consensus 53 ~~nG~l--~aI~Gv~~d---------~~~~vG~pWlV~T~~v~k---~~~~f~re~r~~l~e~~~Yp~LwNyV~~~N~~h 118 (153)
T PHA01733 53 APDGSL--AGVAGLVED---------MGNRVGEIWMVCTPAIEK---NPIALLRGAKWWLPKSRNYDLLWNIVDKRNLVH 118 (153)
T ss_pred ecCCcE--EEEeccccc---------ccCCCCceeEEecHHhHh---CCHHHHHHHHHHHHHhccccHHHHhHhcccHHH
Confidence 345666 666665322 122334443344433333 223445555555443 35666777899999999
Q ss_pred HHHHHHCCCEEeccccc
Q 025854 207 KKLYMKSGFIFENDEPA 223 (247)
Q Consensus 207 ~~fY~k~GF~~~~~~~~ 223 (247)
++|.+.+||+.....+.
T Consensus 119 ir~Lk~lGF~f~~~~~~ 135 (153)
T PHA01733 119 RKLLRKLGFKGLRYVQP 135 (153)
T ss_pred HHHHHHcCceeeccccc
Confidence 99999999998877654
No 101
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=90.97 E-value=0.73 Score=40.06 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=29.1
Q ss_pred EEEEEEEEccCcccCcHHHHHHHHHHHHHHHcC
Q 025854 159 AYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWG 191 (247)
Q Consensus 159 ~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g 191 (247)
-.+.-|.|.|.||++|+|+.|++..-+.++..|
T Consensus 156 nNLaCIltLPpyQrkGyG~~LI~fSYeLSr~Eg 188 (290)
T PLN03238 156 YNLACILTLPPYQRKGYGKFLISFAYELSKREG 188 (290)
T ss_pred CcEEEEEecChhhhccHhHhHHHHHhHHhhccC
Confidence 457789999999999999999999998887665
No 102
>cd04266 DUF619-NAGS-FABP DUF619 domain of N-acetylglutamate Synthase of the fungal arginine-biosynthetic pathway. DUF619-NAGS-FABP: This family includes the DUF619 domain of N-acetylglutamate synthase (NAGS) of the fungal arginine-biosynthetic pathway (FABP). This NAGS (also known as arginine-requiring protein 2 or ARG2) consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. NAGS catalyzes the formation of NAG from acetylcoenzyme A and L-glutamate. The DUF619 domain, yet to be characterized, is predicted to function in NAGS association in fungi.
Probab=89.54 E-value=2.8 Score=31.13 Aligned_cols=49 Identities=22% Similarity=0.249 Sum_probs=38.6
Q ss_pred CCeEEEEEEEEccCccc-CcHHHHHHHHHHHHHHHcCCcE-EEEEEecCCHHHHHHH
Q 025854 156 FARAYLSNVCVAKELHR-NGLGYEIVAKSKLVAQGWGISD-LYVHVAFDNEPAKKLY 210 (247)
Q Consensus 156 ~~~~~I~~l~V~p~~Rg-~GiG~~Ll~~~~~~a~~~g~~~-i~L~v~~~N~~A~~fY 210 (247)
...+||..++|.+..|| .|++..+.+.+.+ .+.+ +...+..+|+. .+.|
T Consensus 37 ~~v~yLdKFav~~~~~gl~gv~D~vf~~m~~-----~fp~~L~Wrsr~~n~~-n~Wy 87 (108)
T cd04266 37 EKIAYLDKFAVLPKAQGSDGIADILFNAMLD-----GFPNELIWRSRKDNPV-NKWY 87 (108)
T ss_pred CCceEEEEEEEccccccccchHHHHHHHHHH-----cCCCceEEEeCCCCcc-cceE
Confidence 45789999999999997 8999999998886 3454 77777777754 3444
No 103
>KOG4601 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.42 E-value=0.61 Score=39.16 Aligned_cols=57 Identities=11% Similarity=0.085 Sum_probs=41.1
Q ss_pred CeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHH-CCCE
Q 025854 157 ARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMK-SGFI 216 (247)
Q Consensus 157 ~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k-~GF~ 216 (247)
....|.++||++..|++|.|++|++.+++. .+.+.-.+.++.-....++|-+| +|-+
T Consensus 107 e~lcILDFyVheS~QR~G~G~~lfdyMl~k---E~vephQ~a~DrPS~kLl~Fm~khYgl~ 164 (264)
T KOG4601|consen 107 EALCILDFYVHESEQRSGNGFKLFDYMLKK---ENVEPHQCAFDRPSAKLLQFMEKHYGLK 164 (264)
T ss_pred CCceEEEEEeehhhhhcCchHHHHHHHHHh---cCCCchheeccChHHHHHHHHHHhcCcc
Confidence 345688999999999999999999999864 35554445544444455777776 3554
No 104
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=89.17 E-value=0.57 Score=44.39 Aligned_cols=68 Identities=13% Similarity=0.128 Sum_probs=57.4
Q ss_pred EEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEecccccccccccCC
Q 025854 164 VCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFENDEPAWHARFLDR 231 (247)
Q Consensus 164 l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~~~~~~~~~~~ 231 (247)
.++..+.---|+.+++|+-++.-.+.+|+....+.|..++..-.+||.++||...+......-.++|+
T Consensus 822 ~~~~~~a~D~~~~k~m~~vll~tL~aNGsrGaf~~V~~dD~~~~~fys~lG~~d~~~~e~~~~~i~Gr 889 (891)
T KOG3698|consen 822 TYFGMDASDAHPMKKMIQVLLVTLAANGSRGAFLTVAIDDIERQKFYSELGLTDLGLSECQRFRIFGR 889 (891)
T ss_pred hccccccccchHHHHHHHHHHHHHHhcCCcceeEEechhHHHHHHHHHHhchHHHhHhhcceEEEecc
Confidence 45566666889999999999999999999999999999999999999999999888766554444443
No 105
>PLN03239 histone acetyltransferase; Provisional
Probab=88.92 E-value=1.1 Score=40.15 Aligned_cols=33 Identities=18% Similarity=0.115 Sum_probs=29.0
Q ss_pred EEEEEEEEccCcccCcHHHHHHHHHHHHHHHcC
Q 025854 159 AYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWG 191 (247)
Q Consensus 159 ~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g 191 (247)
..+.-|.|.|.||++|+|+.|++..-+.++..|
T Consensus 214 ~NLaCIltLPpyQrkGyG~lLI~fSYeLSr~Eg 246 (351)
T PLN03239 214 YNLACILTFPAHQRKGYGRFLIAFSYELSKKEE 246 (351)
T ss_pred CceEEEEecChhhhcchhhhhHhhhhHhhhhcC
Confidence 357889999999999999999999988887665
No 106
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=88.83 E-value=8.6 Score=31.95 Aligned_cols=65 Identities=15% Similarity=0.130 Sum_probs=49.6
Q ss_pred CCCCeEEEEEEEEcc--CcccC---c-HHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeccc
Q 025854 154 GDFARAYLSNVCVAK--ELHRN---G-LGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFENDE 221 (247)
Q Consensus 154 ~~~~~~~I~~l~V~p--~~Rg~---G-iG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~ 221 (247)
......+.+.++|++ .-++. . ++..|+.-+++++.+.|+++|...+. ..-.+..++.||..+...
T Consensus 94 ~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~ie~a~~~G~~~IvtVt~---~~meril~r~Gw~~~riG 164 (209)
T COG3916 94 SSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMIEYALARGITGIVTVTD---TGMERILRRAGWPLTRIG 164 (209)
T ss_pred CCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHHHHHHHHcCCceEEEEEc---hHHHHHHHHcCCCeEEcC
Confidence 345678999999987 33332 3 47899999999999999999976554 456779999999875543
No 107
>PF04768 DUF619: Protein of unknown function (DUF619); InterPro: IPR006855 This region of unknown function is found at the C terminus of Neurospora crassa acetylglutamate synthase (2.7.2.8 from EC). It is also found C-terminal to the amino acid kinase region in some fungal acetylglutamate kinase enzymes (IPR001048 from INTERPRO). These enzymes play a role in arginine biosynthesis.; PDB: 3S6K_A 4AB7_F 3ZZF_B 3ZZI_D 3ZZH_A 3ZZG_A 3S6G_Y 3S6H_A 3S7Y_A.
Probab=88.64 E-value=2.6 Score=33.95 Aligned_cols=77 Identities=18% Similarity=0.281 Sum_probs=49.6
Q ss_pred EEEccccCceeeeeehhhhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHH
Q 025854 127 ACINATLPLSQISSVSEELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPA 206 (247)
Q Consensus 127 ~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A 206 (247)
++.++... |++-+..+ ........+||..++|.+..||.|++..+.+.+.+. +..+...+..+|+ .
T Consensus 65 iy~d~~y~--~~AIVt~e------~~~~~~~v~yLdKFav~~~~~g~gv~D~vf~~i~~d-----~p~L~Wrsr~~n~-~ 130 (170)
T PF04768_consen 65 IYVDEDYE--GAAIVTPE------GPDSNGPVPYLDKFAVSKSAQGSGVADNVFNAIRKD-----FPKLFWRSREDNP-N 130 (170)
T ss_dssp EEEETTSS--EEEEEEEE-------SCTCTSEEEEEEEEE-HHHHHTTHHHHHHHHHHHH------SSEEEEEETT-T-T
T ss_pred EEEeCCce--EEEEEEec------CCCCCCCCeEEEEEEecchhhhcCHHHHHHHHHHHh-----ccceEEEecCCCC-c
Confidence 45666663 33333222 123345689999999999999999999999999654 4457777888775 4
Q ss_pred HHHHH-H-CCCEE
Q 025854 207 KKLYM-K-SGFIF 217 (247)
Q Consensus 207 ~~fY~-k-~GF~~ 217 (247)
.++|- | -|+-.
T Consensus 131 ~~Wyf~rs~G~~~ 143 (170)
T PF04768_consen 131 NKWYFERSDGSFK 143 (170)
T ss_dssp HHHHHHH-SEEEE
T ss_pred ccEEEEeeEEEEE
Confidence 45553 3 35554
No 108
>PTZ00064 histone acetyltransferase; Provisional
Probab=88.02 E-value=1.2 Score=41.69 Aligned_cols=33 Identities=21% Similarity=0.162 Sum_probs=29.2
Q ss_pred EEEEEEEEccCcccCcHHHHHHHHHHHHHHHcC
Q 025854 159 AYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWG 191 (247)
Q Consensus 159 ~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g 191 (247)
..+..|.|.|.||++|+|+.|++..-+..+..|
T Consensus 385 nNLACILtLPpyQRKGYGklLIdfSYeLSrrEg 417 (552)
T PTZ00064 385 YNLACILTLPCYQRKGYGKLLVDLSYKLSLKEG 417 (552)
T ss_pred CceEEEEecchhhhcchhhhhhhhhhhhhhhcC
Confidence 367889999999999999999999998887665
No 109
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=86.13 E-value=8.3 Score=34.11 Aligned_cols=60 Identities=10% Similarity=-0.140 Sum_probs=49.8
Q ss_pred EEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEecccc
Q 025854 163 NVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFENDEP 222 (247)
Q Consensus 163 ~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~~ 222 (247)
..+.++++++.+-+..|+-+++++|.++|+....+.....|....+|=++.||+.+....
T Consensus 224 ~~g~~~~~~~~~~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~~~G~~~~~l~~ 283 (330)
T TIGR03019 224 YAGGLREARDVAANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKKNWGFEPQPLHY 283 (330)
T ss_pred eccChHHHHhhChHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHhcCCCeeccceE
Confidence 456789999999999999999999999999999987655566667777888999765543
No 110
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=85.53 E-value=1.2 Score=40.44 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=27.5
Q ss_pred EEEEEEEEccCcccCcHHHHHHHHHHHHHHHcC
Q 025854 159 AYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWG 191 (247)
Q Consensus 159 ~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g 191 (247)
..+.-|-|.|-||++|+|+.|++..-+..+..|
T Consensus 261 yNlaCILtLPpyQRkGYGklLIdFSYeLSr~E~ 293 (396)
T KOG2747|consen 261 YNLACILTLPPYQRKGYGKLLIDFSYELSRREG 293 (396)
T ss_pred cceeeeeecChhhhcccchhhhhhhhhhhcccC
Confidence 457788999999999999999998887775443
No 111
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=85.37 E-value=1.2 Score=41.21 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=28.5
Q ss_pred EEEEEEEEccCcccCcHHHHHHHHHHHHHHHcC
Q 025854 159 AYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWG 191 (247)
Q Consensus 159 ~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g 191 (247)
..|..|.|.|.||++|+|+.|++..-+..+..|
T Consensus 307 ~NLaCIltlP~yQrkGyG~~LI~~SYeLSr~eg 339 (450)
T PLN00104 307 YNLACILTLPPYQRKGYGKFLIAFSYELSKREG 339 (450)
T ss_pred CceEEEEecchhhhcchhheehhheehhhhccC
Confidence 357889999999999999999998888876655
No 112
>COG3138 AstA Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]
Probab=84.25 E-value=2.1 Score=37.28 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=19.6
Q ss_pred eEEEEEEEEccCcccCcHHHHHHH
Q 025854 158 RAYLSNVCVAKELHRNGLGYEIVA 181 (247)
Q Consensus 158 ~~~I~~l~V~p~~Rg~GiG~~Ll~ 181 (247)
..+|..++++|+||.-|-|+.|-+
T Consensus 119 ~SEl~sLFl~pd~Rkg~nG~Llsr 142 (336)
T COG3138 119 NSELCTLFLDPDWRKGGNGRLLSK 142 (336)
T ss_pred chhhhheeecHHHhcccchhhhhh
Confidence 467889999999999888876643
No 113
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=83.05 E-value=6.2 Score=30.26 Aligned_cols=38 Identities=13% Similarity=0.217 Sum_probs=34.2
Q ss_pred EccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCC
Q 025854 166 VAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDN 203 (247)
Q Consensus 166 V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N 203 (247)
-||++..+++|+-.+-.-+++|++.|+.-++|.-...+
T Consensus 70 yDPd~~~~SlG~~~iL~eI~~a~~~~l~y~YLGY~I~~ 107 (128)
T PF04377_consen 70 YDPDYSKRSLGTYSILREIELARELGLPYYYLGYWIHG 107 (128)
T ss_pred eCCCccccCcHHHHHHHHHHHHHHcCCCEEeeCeEeCC
Confidence 39999999999999999999999999999999766555
No 114
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=81.08 E-value=9.7 Score=30.96 Aligned_cols=78 Identities=12% Similarity=0.118 Sum_probs=59.4
Q ss_pred CCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEec-----------ccc
Q 025854 154 GDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFEN-----------DEP 222 (247)
Q Consensus 154 ~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~-----------~~~ 222 (247)
......+|.+++.. +.|.++.|+..+.......|++.+.. .....-++++.|+|..... ...
T Consensus 83 ~R~~IvEvGnLAs~----~~g~~~~l~~~l~~~L~~~g~~w~vf---TaT~~lr~~~~rlgl~~~~La~Ad~~rl~~~~~ 155 (179)
T PF12261_consen 83 SRSQIVEVGNLASF----SPGAARLLFAALAQLLAQQGFEWVVF---TATRQLRNLFRRLGLPPTVLADADPSRLGDDRA 155 (179)
T ss_pred chhheeEeechhhc----CcccHHHHHHHHHHHHHHCCCCEEEE---eCCHHHHHHHHHcCCCceeccccCHhHcCcChh
Confidence 34456788888755 68999999999999999999886643 4567899999999998432 234
Q ss_pred cccccccCCcceEEEE
Q 025854 223 AWHARFLDRPRRILLW 238 (247)
Q Consensus 223 ~~~~~~~~~~~~l~~~ 238 (247)
.|..+|-..|..+...
T Consensus 156 ~WGsYY~~~P~V~a~~ 171 (179)
T PF12261_consen 156 SWGSYYDHQPQVMAGD 171 (179)
T ss_pred hhhhhhcCCCeEEEEE
Confidence 6877777788776654
No 115
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=79.94 E-value=12 Score=31.92 Aligned_cols=39 Identities=13% Similarity=0.128 Sum_probs=35.6
Q ss_pred EEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCC
Q 025854 165 CVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDN 203 (247)
Q Consensus 165 ~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N 203 (247)
+-||++-.+++|+..+-.-+++|++.|...++|.-+..+
T Consensus 174 FyDPd~~~~SLG~~~iL~qI~~ak~~gl~y~YLGY~I~~ 212 (240)
T PRK01305 174 FYDPDEEHRSLGTFAILWQIELAKRLGLPYVYLGYWIKG 212 (240)
T ss_pred eeCCCccccCCHHHHHHHHHHHHHHcCCCeEeeeEEECC
Confidence 349999999999999999999999999999999877766
No 116
>KOG2696 consensus Histone acetyltransferase type b catalytic subunit [Chromatin structure and dynamics]
Probab=76.76 E-value=5.3 Score=36.02 Aligned_cols=48 Identities=17% Similarity=0.121 Sum_probs=35.4
Q ss_pred CeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHH
Q 025854 157 ARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEP 205 (247)
Q Consensus 157 ~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~ 205 (247)
-+..|..+-+.|.|||+|+|..|++.+....... -+.+.++|...+++
T Consensus 216 ~R~RiSQmlilpPfq~~Glgs~l~E~i~r~~~~~-p~v~DiTVEdPse~ 263 (403)
T KOG2696|consen 216 IRPRISQMLILPPFQGKGLGSQLYEAIARDYLEE-PTVLDITVEDPSEA 263 (403)
T ss_pred hhhhhheeEEeccccCCchHHHHHHHHHHhhccC-CceeEEEecCchHH
Confidence 5678899999999999999999999999554332 23455556544443
No 117
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=72.95 E-value=7.4 Score=28.59 Aligned_cols=16 Identities=31% Similarity=0.592 Sum_probs=14.3
Q ss_pred HHHHHHHHHCCCEEec
Q 025854 204 EPAKKLYMKSGFIFEN 219 (247)
Q Consensus 204 ~~A~~fY~k~GF~~~~ 219 (247)
+++++||+++||+...
T Consensus 12 ~~s~~FY~~lGf~~~~ 27 (124)
T cd09012 12 EKSTAFYTALGFEFNP 27 (124)
T ss_pred HHHHHHHHHCCCEEcc
Confidence 7899999999999764
No 118
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=72.87 E-value=13 Score=26.37 Aligned_cols=43 Identities=16% Similarity=0.145 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEec
Q 025854 175 LGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFEN 219 (247)
Q Consensus 175 iG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~ 219 (247)
.-+.+........+. +..++=.|..+|...++|.+.+|++...
T Consensus 41 F~k~i~~~~d~~l~~--Y~~l~N~V~~~N~~HIRfLk~lGA~f~~ 83 (86)
T PF11090_consen 41 FRKLIKEYLDKMLKQ--YPVLWNFVWVGNKSHIRFLKSLGAVFHN 83 (86)
T ss_pred HHHHHHHHHHHHHHH--hhheeEEEEeCCHHHHHHHHhcCcEEcc
Confidence 444444444444444 5568888999999999999999998643
No 119
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=72.67 E-value=9.8 Score=30.74 Aligned_cols=56 Identities=18% Similarity=0.089 Sum_probs=44.9
Q ss_pred CCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCC
Q 025854 155 DFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSG 214 (247)
Q Consensus 155 ~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~G 214 (247)
+--.+++.-.+|.|+.+|.||+..| ..+.-..++.|+.....+|. .+-++.+++++
T Consensus 82 DlLVaElGLygVRpDLEGlGi~hs~-r~m~PvLq~LgVPF~FGtVR---~al~~Hv~R~~ 137 (196)
T PF02474_consen 82 DLLVAELGLYGVRPDLEGLGISHSM-RVMYPVLQELGVPFGFGTVR---HALRNHVERLC 137 (196)
T ss_pred ceeEEEEEEEEeeccccccccchhh-hhhhhHHHhcCCCeecccch---HHHHHHHHHHh
Confidence 3347899999999999999999976 67778889999988877775 45667777765
No 120
>cd03173 DUF619-like DUF619 domain of various N-acetylglutamate Kinases and N-acetylglutamate Synthases. DUF619-like: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. This subgroup also includes the DUF619 domain of the FABP N-acetylglutamate kinase (NAGK), the enzyme that catalyzes the second reaction of arginine
Probab=71.56 E-value=36 Score=24.76 Aligned_cols=49 Identities=20% Similarity=0.213 Sum_probs=38.9
Q ss_pred CCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHH
Q 025854 156 FARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLY 210 (247)
Q Consensus 156 ~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY 210 (247)
...++|..++|.+..++.|++..+.+.+.+. +..+...+..+|+. .+.|
T Consensus 31 ~~v~~LdkFav~~~~~~~gv~D~vf~~i~~d-----~~~L~Wrsr~~n~~-n~Wy 79 (98)
T cd03173 31 NSIPYLDKFAVSDHLWLNNVTDNIFNLIRKD-----FPSLLWRVRENDAN-LKWY 79 (98)
T ss_pred CCCEEEEEEEEcccccccCHHHHHHHHHHhh-----CCeeEEEeCCCCCc-cceE
Confidence 4578999999999999999999999988755 45687777777753 3444
No 121
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=71.03 E-value=7.3 Score=28.40 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=17.4
Q ss_pred HHHHHHHHHCCCEEecccccc
Q 025854 204 EPAKKLYMKSGFIFENDEPAW 224 (247)
Q Consensus 204 ~~A~~fY~k~GF~~~~~~~~~ 224 (247)
+++++||+.+||+.......+
T Consensus 13 ~~s~~FY~~LGf~~~~~~~~~ 33 (113)
T cd08356 13 AESKQFYQALGFELEWENDNL 33 (113)
T ss_pred HHHHHHHHHhCCeeEecCCCE
Confidence 789999999999988765443
No 122
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=70.95 E-value=11 Score=27.41 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=18.6
Q ss_pred EEEEEEecCCHHHHHHHHHCCCEEecc
Q 025854 194 DLYVHVAFDNEPAKKLYMKSGFIFEND 220 (247)
Q Consensus 194 ~i~L~v~~~N~~A~~fY~k~GF~~~~~ 220 (247)
.+.|.|. +=+.|++||+++||+....
T Consensus 3 ~i~l~V~-D~~~a~~FY~~LGf~~~~~ 28 (122)
T cd07235 3 AVGIVVA-DMAKSLDFYRRLGFDFPEE 28 (122)
T ss_pred eEEEEec-cHHHHHHHHHHhCceecCC
Confidence 3555553 3378999999999997544
No 123
>PHA00432 internal virion protein A
Probab=70.47 E-value=9.4 Score=29.60 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=26.3
Q ss_pred CcEEEEEEecCCHHHHHHHHHCCCEEecc
Q 025854 192 ISDLYVHVAFDNEPAKKLYMKSGFIFEND 220 (247)
Q Consensus 192 ~~~i~L~v~~~N~~A~~fY~k~GF~~~~~ 220 (247)
+..++=.|+..|..+++|.+.+||+...+
T Consensus 93 yp~LwNyV~~~N~~hir~Lk~lGf~f~~e 121 (137)
T PHA00432 93 YPSLWNYVWVGNKSHIRFLKSIGAVFHNE 121 (137)
T ss_pred hhhhheeeecCCHHHHHHHHHcCeeeecc
Confidence 66788889999999999999999998776
No 124
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=70.33 E-value=13 Score=33.42 Aligned_cols=86 Identities=14% Similarity=0.105 Sum_probs=53.7
Q ss_pred ceeEEEEEcc--ccCceeeeeehhhhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCC-cEEEE-
Q 025854 122 EFRTVACINA--TLPLSQISSVSEELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGI-SDLYV- 197 (247)
Q Consensus 122 ~~~~~~~~~~--~~~~vg~~~~~~~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~-~~i~L- 197 (247)
.|..++-... ++ +|+++.....+. ..+.......|.-|||+++.|+++++--|++++...+.-.|+ +.++.
T Consensus 134 ~WHiGVRv~~s~kL--VaFIsaiP~~ir---vrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvnl~gIfqA~yTa 208 (421)
T KOG2779|consen 134 EWHIGVRVKSSKKL--VAFISAIPATIR---VRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVNLEGIFQAAYTA 208 (421)
T ss_pred ceEEEEEEecCCce--EEEEeccccEEE---EccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhhhhhhhhHhhhc
Confidence 3444444433 45 776665322111 133345578999999999999999999999999998876664 22221
Q ss_pred -EEecCCHHHHHHHHH
Q 025854 198 -HVAFDNEPAKKLYMK 212 (247)
Q Consensus 198 -~v~~~N~~A~~fY~k 212 (247)
.|...+...-+.|.+
T Consensus 209 GvvLp~PVstcRY~HR 224 (421)
T KOG2779|consen 209 GVVLPKPVSTCRYWHR 224 (421)
T ss_pred ceeeccccchhhhhhc
Confidence 233445445555554
No 125
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=69.42 E-value=6.5 Score=28.76 Aligned_cols=19 Identities=16% Similarity=0.448 Sum_probs=16.4
Q ss_pred HHHHHHHHHCCCEEecccc
Q 025854 204 EPAKKLYMKSGFIFENDEP 222 (247)
Q Consensus 204 ~~A~~fY~k~GF~~~~~~~ 222 (247)
+.+++||+++||+......
T Consensus 14 ~~s~~FY~~lG~~~~~~~~ 32 (120)
T cd08350 14 DATEAFYARLGFSVGYRQA 32 (120)
T ss_pred HHHHHHHHHcCCEEEecCC
Confidence 7899999999999876655
No 126
>PHA02769 hypothetical protein; Provisional
Probab=66.20 E-value=5.8 Score=29.72 Aligned_cols=44 Identities=25% Similarity=0.286 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHH---HHcCCcEEEEEEecCCHHHHHHHHHCCCEEeccc
Q 025854 176 GYEIVAKSKLVA---QGWGISDLYVHVAFDNEPAKKLYMKSGFIFENDE 221 (247)
Q Consensus 176 G~~Ll~~~~~~a---~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~ 221 (247)
|..|+..+...+ +..|++.++.--..+. +-++|.|.||+.+|..
T Consensus 94 gd~lvnfl~~l~~k~~~dg~evlwtlgfpdh--snaly~kagfk~vg~t 140 (154)
T PHA02769 94 GDHLVNFLNDLAEKLKKDGFEVLWTLGFPDH--SNALYKKAGFKLVGQT 140 (154)
T ss_pred hHHHHHHHHHHHHHHhcCCeEEEEEecCCCc--chhHHhhhhhhHhccc
Confidence 556666655444 5568876655444443 4568999999988765
No 127
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=65.42 E-value=31 Score=25.51 Aligned_cols=72 Identities=13% Similarity=0.128 Sum_probs=27.9
Q ss_pred EccCcccCcHHHHHHHHHHHHHHH-cCCcEEEEEEecCCHHHHHHHHH---CCCEEecccccccccccCCcceEEEE
Q 025854 166 VAKELHRNGLGYEIVAKSKLVAQG-WGISDLYVHVAFDNEPAKKLYMK---SGFIFENDEPAWHARFLDRPRRILLW 238 (247)
Q Consensus 166 V~p~~Rg~GiG~~Ll~~~~~~a~~-~g~~~i~L~v~~~N~~A~~fY~k---~GF~~~~~~~~~~~~~~~~~~~l~~~ 238 (247)
+.+..-++| -|.-+-.+++.|.+ .+|+.+.+.+..+......|-+. .||+.+.....-.......+..++|-
T Consensus 30 ip~~~~~~~-~K~~lvaLLElAee~L~c~~vvic~~k~~~d~~~Llr~l~~vGF~lv~~~~~~~~~~~~s~~~lfm~ 105 (108)
T PF02100_consen 30 IPSSALGQG-SKESLVALLELAEEKLGCSHVVICLDKNRPDRASLLRTLMWVGFELVTPGHPSVPPDITSPDWLFMG 105 (108)
T ss_dssp -SS---SS---SHHHHHHHHHHHHHH----EEEEE---SS-HHHHHHHHTTT--EEE----SS-SS----S--EEEE
T ss_pred ECCcccccc-cHHHHHHHHHHhcCcCCCCEEEEEEECCchhHHHhhhhcEeeccEecCCCCCCCCCcCCCCCEEEEE
Confidence 344455555 45666667778864 69999999888776555555555 68888776532222223345666663
No 128
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=63.58 E-value=8.1 Score=29.09 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=20.6
Q ss_pred CcEEEEEEecCCHHHHHHHHHCCCEEecc
Q 025854 192 ISDLYVHVAFDNEPAKKLYMKSGFIFEND 220 (247)
Q Consensus 192 ~~~i~L~v~~~N~~A~~fY~k~GF~~~~~ 220 (247)
+..+.+.|. +-+.+++||+++||+....
T Consensus 4 i~Hi~i~v~-Dl~~s~~FY~~LG~~~~~~ 31 (142)
T cd08353 4 MDNVGIVVR-DLEAAIAFFLELGLELEGR 31 (142)
T ss_pred eeeEEEEeC-CHHHHHHHHHHcCCEEccc
Confidence 445666665 3478999999999987654
No 129
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=62.98 E-value=4.4 Score=36.24 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=23.9
Q ss_pred EEEEEEEEccCcccCcHHHHHHHHHHHHHH
Q 025854 159 AYLSNVCVAKELHRNGLGYEIVAKSKLVAQ 188 (247)
Q Consensus 159 ~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~ 188 (247)
..+..|-+.|-||++|+|+.|++..-...+
T Consensus 263 yNLaCILtLP~yQRrGYG~lLIdFSY~Ls~ 292 (395)
T COG5027 263 YNLACILTLPPYQRRGYGKLLIDFSYLLSQ 292 (395)
T ss_pred CceEEEEecChhHhcccceEeeeeeeeccc
Confidence 457778899999999999999876554443
No 130
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=61.11 E-value=6.3 Score=28.52 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=22.1
Q ss_pred CCeEEEEEEEEccCcccCcHHHHHH
Q 025854 156 FARAYLSNVCVAKELHRNGLGYEIV 180 (247)
Q Consensus 156 ~~~~~I~~l~V~p~~Rg~GiG~~Ll 180 (247)
...++|..++|+|+||+...-..|.
T Consensus 76 ~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 76 RRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred CcEEEeehheECHhHCCChHHHHHh
Confidence 4789999999999999998887774
No 131
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=60.25 E-value=18 Score=26.02 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=20.4
Q ss_pred CcEEEEEEecCCHHHHHHHHHCCCEEeccc
Q 025854 192 ISDLYVHVAFDNEPAKKLYMKSGFIFENDE 221 (247)
Q Consensus 192 ~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~ 221 (247)
+..+.|.|.. =+++++||+.+||+.....
T Consensus 3 i~hv~l~v~d-~~~s~~FY~~lG~~~~~~~ 31 (112)
T cd08344 3 IDHFALEVPD-LEVARRFYEAFGLDVREEG 31 (112)
T ss_pred eeEEEEecCC-HHHHHHHHHHhCCcEEeec
Confidence 4445555532 2789999999999986554
No 132
>PRK04531 acetylglutamate kinase; Provisional
Probab=58.63 E-value=23 Score=32.56 Aligned_cols=48 Identities=21% Similarity=0.354 Sum_probs=38.4
Q ss_pred CeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHH
Q 025854 157 ARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLY 210 (247)
Q Consensus 157 ~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY 210 (247)
...|+..++|.+..||.|++..+.+.+.+. +.++.+.+..+|+.- ++|
T Consensus 309 ~~~~Ldkf~v~~~~~~~~v~d~vf~~~~~~-----~~~L~Wrsr~~n~~~-~Wy 356 (398)
T PRK04531 309 GGPYLDKFAVLDDARGEGLGRAVWNVMREE-----TPQLFWRSRHNNTIN-KFY 356 (398)
T ss_pred CceEeEEEEEccchhhcChHHHHHHHHHhh-----CCceEEEcCCCCCcc-cee
Confidence 468999999999999999999999988765 346777777777543 444
No 133
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=51.42 E-value=23 Score=25.52 Aligned_cols=28 Identities=7% Similarity=0.069 Sum_probs=19.6
Q ss_pred cEEEEEEecCCHHHHHHHHHCCCEEeccc
Q 025854 193 SDLYVHVAFDNEPAKKLYMKSGFIFENDE 221 (247)
Q Consensus 193 ~~i~L~v~~~N~~A~~fY~k~GF~~~~~~ 221 (247)
..+.|.|.. =+++.+||+.+||+.....
T Consensus 5 ~hv~l~v~D-l~~s~~FY~~lGl~~~~~~ 32 (113)
T cd07267 5 AHVRFEHPD-LDKAERFLTDFGLEVAART 32 (113)
T ss_pred EEEEEccCC-HHHHHHHHHHcCCEEEEec
Confidence 345555542 3789999999999976553
No 134
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=49.15 E-value=40 Score=29.33 Aligned_cols=42 Identities=19% Similarity=0.101 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEecCC-----------HHHHHHHHHCCCEEecc
Q 025854 178 EIVAKSKLVAQGWGISDLYVHVAFDN-----------EPAKKLYMKSGFIFEND 220 (247)
Q Consensus 178 ~Ll~~~~~~a~~~g~~~i~L~v~~~N-----------~~A~~fY~k~GF~~~~~ 220 (247)
.-|.+++++|+++|+ .|.|++.... +.+.+.|++.|-+-+..
T Consensus 73 ~dl~elv~Ya~~KgV-gi~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKi 125 (273)
T PF10566_consen 73 FDLPELVDYAKEKGV-GIWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKI 125 (273)
T ss_dssp --HHHHHHHHHHTT--EEEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEE
T ss_pred cCHHHHHHHHHHcCC-CEEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEee
Confidence 556777777777775 3556655554 66777777777664433
No 135
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=48.20 E-value=29 Score=27.53 Aligned_cols=41 Identities=17% Similarity=0.219 Sum_probs=30.4
Q ss_pred HHHHHHHHHHcCCcEEEEE--EecCCHH--HHHHHHHCCCEEecc
Q 025854 180 VAKSKLVAQGWGISDLYVH--VAFDNEP--AKKLYMKSGFIFEND 220 (247)
Q Consensus 180 l~~~~~~a~~~g~~~i~L~--v~~~N~~--A~~fY~k~GF~~~~~ 220 (247)
+++.+++|+.+|+++|-+- +.-.+++ -.++.+..||++...
T Consensus 43 veEiieFak~mgykkiGiAfCiGL~~EA~~~~~iL~~~gFev~sV 87 (157)
T PF08901_consen 43 VEEIIEFAKRMGYKKIGIAFCIGLRKEARILAKILEANGFEVYSV 87 (157)
T ss_pred HHHHHHHHHHcCCCeeeehhhHhHHHHHHHHHHHHHHCCCEEEEE
Confidence 6888999999999998884 3333333 356778999997665
No 136
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=48.04 E-value=36 Score=25.82 Aligned_cols=18 Identities=17% Similarity=0.253 Sum_probs=14.2
Q ss_pred CHHHHHHHHH-CCCEEecc
Q 025854 203 NEPAKKLYMK-SGFIFEND 220 (247)
Q Consensus 203 N~~A~~fY~k-~GF~~~~~ 220 (247)
-+.+++||++ +||+...+
T Consensus 13 lerSi~FY~~vLG~~~~~~ 31 (127)
T cd08358 13 RNKTIKFYREVLGMKVLRH 31 (127)
T ss_pred HHHHHHHHHHhcCCEEEee
Confidence 3889999954 89997553
No 137
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=47.63 E-value=25 Score=29.85 Aligned_cols=43 Identities=12% Similarity=0.118 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHcCCcEEEEEE---ecCCHHHHHHHHHCCCEEeccc
Q 025854 179 IVAKSKLVAQGWGISDLYVHV---AFDNEPAKKLYMKSGFIFENDE 221 (247)
Q Consensus 179 Ll~~~~~~a~~~g~~~i~L~v---~~~N~~A~~fY~k~GF~~~~~~ 221 (247)
-...+++.++..|+++|.+-+ ..-|...++||++.||++....
T Consensus 107 ~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~ 152 (239)
T TIGR02990 107 PSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFT 152 (239)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeee
Confidence 345666677788999999864 4457889999999999987763
No 138
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=47.26 E-value=66 Score=22.89 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=17.5
Q ss_pred EEEEEecCCHHHHHHHHH-CCCEEecc
Q 025854 195 LYVHVAFDNEPAKKLYMK-SGFIFEND 220 (247)
Q Consensus 195 i~L~v~~~N~~A~~fY~k-~GF~~~~~ 220 (247)
+.|.|. +-+.++.||++ +||+....
T Consensus 4 ~~l~v~-d~~~s~~Fy~~~lG~~~~~~ 29 (122)
T cd08354 4 TALYVD-DLEAAEAFYEDVLGLELMLK 29 (122)
T ss_pred EEEEeC-CHHHHHHHHHhccCCEEeec
Confidence 444443 23789999985 79998763
No 139
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=44.64 E-value=55 Score=24.47 Aligned_cols=27 Identities=11% Similarity=0.079 Sum_probs=19.8
Q ss_pred EEEEEEecCCHHHHHHHHH-CCCEEeccc
Q 025854 194 DLYVHVAFDNEPAKKLYMK-SGFIFENDE 221 (247)
Q Consensus 194 ~i~L~v~~~N~~A~~fY~k-~GF~~~~~~ 221 (247)
.+.+.|. +=+.+++||++ +||+.....
T Consensus 3 Hi~i~V~-D~e~s~~FY~~vLGf~~~~~~ 30 (136)
T cd08342 3 HVEFYVG-NAKQLASWFSTKLGFEPVAYH 30 (136)
T ss_pred EEEEEeC-CHHHHHHHHHHhcCCeEEEec
Confidence 3555553 33789999999 999987654
No 140
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=43.97 E-value=33 Score=24.61 Aligned_cols=29 Identities=10% Similarity=0.255 Sum_probs=19.9
Q ss_pred CcEEEEEEecCCHHHHHHHHH-CCCEEeccc
Q 025854 192 ISDLYVHVAFDNEPAKKLYMK-SGFIFENDE 221 (247)
Q Consensus 192 ~~~i~L~v~~~N~~A~~fY~k-~GF~~~~~~ 221 (247)
+..+.|.|. +=+.+++||++ +||+.....
T Consensus 2 i~hv~l~v~-d~~~a~~FY~~~lG~~~~~~~ 31 (126)
T cd08346 2 LHHVTLITR-DAQETVDFYTDVLGLRLVKKT 31 (126)
T ss_pred cccEEEEcC-ChhHhHHHHHHccCCEEeeeE
Confidence 444556553 22789999987 799976554
No 141
>PF11124 Pho86: Inorganic phosphate transporter Pho86; InterPro: IPR024297 Pho86p is an ER protein which is produced in response to phosphate starvation. It is essential for growth when phosphate levels are limiting []. Pho86p is also involved in the regulation of Pho84p, a high-affinity phosphate transporter, which is localised to the endoplasmic reticulum (ER) in low phosphate medium. When the level of phosphate increases Pho84p is transported to the vacuole. Pho86p is required for packaging of Pho84p in to COPII vesicles [].
Probab=43.19 E-value=2.4e+02 Score=25.00 Aligned_cols=80 Identities=20% Similarity=0.157 Sum_probs=58.3
Q ss_pred eeeeeehhhhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHc---------CCc-EEEEEEecCCHH
Q 025854 136 SQISSVSEELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGW---------GIS-DLYVHVAFDNEP 205 (247)
Q Consensus 136 vg~~~~~~~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~---------g~~-~i~L~v~~~N~~ 205 (247)
++++++..... ....+.-..-|..+.|..=|..-|+=..|++-++-++++. |.. .+...+...+..
T Consensus 181 IAiisl~~~~~----~St~~~~vv~ItgigvRkVy~Ksgi~e~LidWA~~Rtr~l~~ey~k~k~~~si~ll~d~YSFD~~ 256 (304)
T PF11124_consen 181 IAIISLVPNKD----QSTKENFVVKITGIGVRKVYVKSGIDEDLIDWAMLRTRQLYKEYLKGKKGCSIKLLVDVYSFDKD 256 (304)
T ss_pred eEEEEeccccc----cCCCceEEEEEeeeEEEEEEeecChHHHHHHHHHHHHHHHHHHhccccccceEEEEEEeeeccHH
Confidence 67777743311 1223344578899999999999999999999997665541 222 344567778889
Q ss_pred HHHHHHHCCCEEec
Q 025854 206 AKKLYMKSGFIFEN 219 (247)
Q Consensus 206 A~~fY~k~GF~~~~ 219 (247)
-.+..++.||+...
T Consensus 257 ~~k~L~~~gF~~i~ 270 (304)
T PF11124_consen 257 MKKTLKKKGFKKIS 270 (304)
T ss_pred HHHHHHHCCCeeee
Confidence 99999999999877
No 142
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=41.60 E-value=64 Score=22.90 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=22.6
Q ss_pred CCcEEEEEEecCCHHHHHHHHH-CCCEEecccc
Q 025854 191 GISDLYVHVAFDNEPAKKLYMK-SGFIFENDEP 222 (247)
Q Consensus 191 g~~~i~L~v~~~N~~A~~fY~k-~GF~~~~~~~ 222 (247)
++..+.+.|. +=+.+++||++ +||+......
T Consensus 3 ~l~hi~l~v~-d~~~s~~Fy~~~lG~~~~~~~~ 34 (125)
T cd07253 3 RIDHVVLTVA-DIEATLDFYTRVLGMEVVRFGE 34 (125)
T ss_pred ccceEEEEec-CHHHHHHHHHHHhCceeecccc
Confidence 4556777664 33789999999 8999876654
No 143
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=41.56 E-value=41 Score=25.72 Aligned_cols=17 Identities=35% Similarity=0.665 Sum_probs=14.6
Q ss_pred HHHHHHHHHCCCEEecc
Q 025854 204 EPAKKLYMKSGFIFEND 220 (247)
Q Consensus 204 ~~A~~fY~k~GF~~~~~ 220 (247)
+++.+||.++||+....
T Consensus 15 ~~S~~Fy~alGfk~Npq 31 (133)
T COG3607 15 EASKAFYTALGFKFNPQ 31 (133)
T ss_pred HHHHHHHHHhCcccCCC
Confidence 78899999999997554
No 144
>COG5630 ARG2 Acetylglutamate synthase [Amino acid transport and metabolism]
Probab=41.10 E-value=64 Score=29.48 Aligned_cols=51 Identities=16% Similarity=0.302 Sum_probs=36.1
Q ss_pred CCCeEEEEEEEEccCccc-CcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHH
Q 025854 155 DFARAYLSNVCVAKELHR-NGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLY 210 (247)
Q Consensus 155 ~~~~~~I~~l~V~p~~Rg-~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY 210 (247)
.+...|+..++|.++.|| -|||..++.-+.+..-+ .+.+....+|. +-++|
T Consensus 397 ~~~vpYLDKfAVl~~aQGs~gisd~vfniM~e~fP~----eL~WRSR~~N~-vNkwY 448 (495)
T COG5630 397 ENNVPYLDKFAVLDDAQGSEGISDAVFNIMREEFPN----ELFWRSRHNNQ-VNKWY 448 (495)
T ss_pred CCCCcceeeeeccccccccchHHHHHHHHHHHhCcH----hhhhhhcccCc-chhee
Confidence 446789999999999999 99999999888766431 24344444454 34444
No 145
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=40.41 E-value=85 Score=22.11 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=19.7
Q ss_pred EEEEEEecCCHHHHHHHHH-CCCEEecccc
Q 025854 194 DLYVHVAFDNEPAKKLYMK-SGFIFENDEP 222 (247)
Q Consensus 194 ~i~L~v~~~N~~A~~fY~k-~GF~~~~~~~ 222 (247)
.+.+.|. +=+.+++||++ +||+......
T Consensus 5 hv~l~v~-d~~~~~~FY~~~lg~~~~~~~~ 33 (117)
T cd07240 5 YAELEVP-DLERALEFYTDVLGLTVLDRDA 33 (117)
T ss_pred EEEEecC-CHHHHHHHHHhccCcEEEeecC
Confidence 3444443 22789999999 9999876653
No 146
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=39.86 E-value=1.3e+02 Score=23.70 Aligned_cols=46 Identities=11% Similarity=0.130 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEEE-----------ecCCHHHHHHHHHCCCEEecc
Q 025854 175 LGYEIVAKSKLVAQGWGISDLYVHV-----------AFDNEPAKKLYMKSGFIFEND 220 (247)
Q Consensus 175 iG~~Ll~~~~~~a~~~g~~~i~L~v-----------~~~N~~A~~fY~k~GF~~~~~ 220 (247)
-+....+.+.+.+.+.|+..+.+.+ ....+.|++-..+.|+++...
T Consensus 73 AAq~aa~~~a~k~~~~Gi~~v~V~vr~~gg~~~kg~GpGr~~airaL~~~glkI~~I 129 (149)
T PTZ00129 73 AAMMAAQDVAARCKELGINALHIKLRATGGVRTKTPGPGAQAALRALARAGLKIGRI 129 (149)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHCCCEEEEE
Confidence 3556677778888999999999998 466799999999999997554
No 147
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=39.47 E-value=35 Score=24.46 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=21.8
Q ss_pred CCcEEEEEEecCCHHHHHHHHH-CCCEEecccc
Q 025854 191 GISDLYVHVAFDNEPAKKLYMK-SGFIFENDEP 222 (247)
Q Consensus 191 g~~~i~L~v~~~N~~A~~fY~k-~GF~~~~~~~ 222 (247)
|+..+.+.|. +=+.+++||++ +||+......
T Consensus 3 ~i~hv~l~v~-d~~~s~~FY~~~lG~~~~~~~~ 34 (120)
T cd08362 3 ALRGVGLGVP-DLAAAAAFYREVWGLSVVAEDD 34 (120)
T ss_pred eeeEEEEecC-CHHHHHHHHHhCcCcEEEEecC
Confidence 4455666664 23789999998 8999765543
No 148
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=38.41 E-value=95 Score=22.15 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=16.0
Q ss_pred HHHHHHHHH-CCCEEecccccc
Q 025854 204 EPAKKLYMK-SGFIFENDEPAW 224 (247)
Q Consensus 204 ~~A~~fY~k-~GF~~~~~~~~~ 224 (247)
+.+++||++ +||+.......|
T Consensus 11 ~~s~~FY~~~lG~~~~~~~~~~ 32 (125)
T cd08357 11 EAARAFYGDVLGCKEGRSSETW 32 (125)
T ss_pred HHHHHHHHHhcCCEEeeccCCc
Confidence 789999986 899986654444
No 149
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=38.33 E-value=66 Score=23.30 Aligned_cols=28 Identities=11% Similarity=0.075 Sum_probs=19.6
Q ss_pred CcEEEEEEecCCHHHHHHHHH-CCCEEecc
Q 025854 192 ISDLYVHVAFDNEPAKKLYMK-SGFIFEND 220 (247)
Q Consensus 192 ~~~i~L~v~~~N~~A~~fY~k-~GF~~~~~ 220 (247)
+..+.|.|..- +.|++||+. +||+....
T Consensus 3 l~~v~l~v~Dl-~~s~~FY~~~LG~~~~~~ 31 (120)
T cd07252 3 LGYLGVESSDL-DAWRRFATDVLGLQVGDR 31 (120)
T ss_pred ccEEEEEeCCH-HHHHHHHHhccCceeccC
Confidence 44566666432 679999977 79997654
No 150
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=38.23 E-value=36 Score=26.62 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=20.2
Q ss_pred CCcEEEEEEecCCHHHHHHHHH-CCCEEec
Q 025854 191 GISDLYVHVAFDNEPAKKLYMK-SGFIFEN 219 (247)
Q Consensus 191 g~~~i~L~v~~~N~~A~~fY~k-~GF~~~~ 219 (247)
++..+.+.|. +=+.|++||++ +||+...
T Consensus 4 ~i~Hv~i~V~-Dle~s~~FY~~~LG~~~~~ 32 (162)
T TIGR03645 4 TFSHIGISVP-DLDAAVKFYTEVLGWYLIM 32 (162)
T ss_pred eEEEEEEEeC-CHHHHHHHHHHhcCCEEEe
Confidence 4556667664 33789999987 8998753
No 151
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=38.06 E-value=33 Score=23.96 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=17.7
Q ss_pred HHHHHHHHH-CCCEEeccccccc
Q 025854 204 EPAKKLYMK-SGFIFENDEPAWH 225 (247)
Q Consensus 204 ~~A~~fY~k-~GF~~~~~~~~~~ 225 (247)
+.+++||++ +||+.......+.
T Consensus 7 ~~a~~FY~~~lg~~~~~~~~~~~ 29 (108)
T PF12681_consen 7 EAAAAFYEDVLGFEVVFDDPDYV 29 (108)
T ss_dssp HHHHHHHHHTTTSEEEEEETSEE
T ss_pred HHHHHHHHHhcCCEEEEeCCCeE
Confidence 779999998 9999888655443
No 152
>PRK00756 acyltransferase NodA; Provisional
Probab=37.06 E-value=84 Score=25.35 Aligned_cols=46 Identities=24% Similarity=0.175 Sum_probs=36.7
Q ss_pred CCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEec
Q 025854 155 DFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAF 201 (247)
Q Consensus 155 ~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~ 201 (247)
+--.+++.-.+|.|+..|.||+..+ ..+.-..++.|+..-.-+|..
T Consensus 82 DlLVaElGLygVRpDLEGlGi~~S~-r~m~PvLq~LgVPF~FGtVR~ 127 (196)
T PRK00756 82 DLLVAELGLYGVRPDLEGLGIAHSI-RAMYPVLQELGVPFAFGTVRH 127 (196)
T ss_pred ceeEEEeeeeeeccccccccchhhH-HHHHHHHHhcCCCeecccchH
Confidence 3346888888999999999999877 677777888898877666643
No 153
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=37.02 E-value=87 Score=22.89 Aligned_cols=28 Identities=11% Similarity=0.101 Sum_probs=19.2
Q ss_pred cEEEEEEecCCHHHHHHHHH-CCCEEeccc
Q 025854 193 SDLYVHVAFDNEPAKKLYMK-SGFIFENDE 221 (247)
Q Consensus 193 ~~i~L~v~~~N~~A~~fY~k-~GF~~~~~~ 221 (247)
..+.+.|. +=+.+.+||++ +||+...+.
T Consensus 8 ~~v~l~v~-d~~~s~~FY~~vLG~~~~~~~ 36 (124)
T cd08361 8 AYVRLGTR-DLAGATRFATDILGLQVAERT 36 (124)
T ss_pred eEEEEeeC-CHHHHHHHHHhccCceeccCC
Confidence 34555554 22789999988 799976543
No 154
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=36.98 E-value=41 Score=24.36 Aligned_cols=29 Identities=21% Similarity=0.084 Sum_probs=20.4
Q ss_pred CcEEEEEEecCCHHHHHHHHH-CCCEEeccc
Q 025854 192 ISDLYVHVAFDNEPAKKLYMK-SGFIFENDE 221 (247)
Q Consensus 192 ~~~i~L~v~~~N~~A~~fY~k-~GF~~~~~~ 221 (247)
+..+.|.|.. =+.+++||++ +||+.....
T Consensus 5 l~hv~l~v~D-l~~s~~FY~~~lG~~~~~~~ 34 (122)
T cd07265 5 PGHVQLRVLD-LEEAIKHYREVLGLDEVGRD 34 (122)
T ss_pred EeEEEEEeCC-HHHHHHHHHhccCCEeeeec
Confidence 4456666643 3789999976 899976654
No 155
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=36.58 E-value=38 Score=24.04 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=13.7
Q ss_pred HHHHHHHHH-CCCEEec
Q 025854 204 EPAKKLYMK-SGFIFEN 219 (247)
Q Consensus 204 ~~A~~fY~k-~GF~~~~ 219 (247)
..+++||++ +||+...
T Consensus 12 ~~s~~FY~~~lG~~~~~ 28 (112)
T cd07238 12 EAAAAFYADVLGLDVVM 28 (112)
T ss_pred HHHHHHHHHhcCceEEE
Confidence 678999998 9999764
No 156
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=35.95 E-value=53 Score=23.34 Aligned_cols=29 Identities=28% Similarity=0.536 Sum_probs=21.4
Q ss_pred CCcEEEEEEecCCHHHHHHHHH-CCCEEecc
Q 025854 191 GISDLYVHVAFDNEPAKKLYMK-SGFIFEND 220 (247)
Q Consensus 191 g~~~i~L~v~~~N~~A~~fY~k-~GF~~~~~ 220 (247)
++..+.+.|. +=++|++||.+ +||+....
T Consensus 3 ~~~hi~l~v~-d~~~a~~fy~~~lG~~~~~~ 32 (125)
T cd08352 3 GIHHVAIICS-DYEKSKEFYVEILGFKVIRE 32 (125)
T ss_pred ccceEEEEcC-CHHHHHHHHHHhcCCEEeee
Confidence 5566777774 33789999985 99997644
No 157
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.83 E-value=64 Score=27.08 Aligned_cols=38 Identities=13% Similarity=0.089 Sum_probs=29.3
Q ss_pred HHHHHHHcCCcEEEEE---EecCCHHHHHHHHHCCCEEecc
Q 025854 183 SKLVAQGWGISDLYVH---VAFDNEPAKKLYMKSGFIFEND 220 (247)
Q Consensus 183 ~~~~a~~~g~~~i~L~---v~~~N~~A~~fY~k~GF~~~~~ 220 (247)
+++-.+..|.+++.+- +.+-|++-+.|+++.||+++.-
T Consensus 109 vv~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~ 149 (238)
T COG3473 109 VVEALNALGAQRISVLTPYIDEVNQREIEFLEANGFEIVDF 149 (238)
T ss_pred HHHHHHhhCcceEEEeccchhhhhhHHHHHHHhCCeEEEEe
Confidence 3445566688888775 4667899999999999998665
No 158
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=35.57 E-value=1.9e+02 Score=25.84 Aligned_cols=40 Identities=23% Similarity=0.233 Sum_probs=33.8
Q ss_pred CCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCC
Q 025854 153 GGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGI 192 (247)
Q Consensus 153 ~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~ 192 (247)
+......++.-+||+.+.|++.+.-.|++++...+...|+
T Consensus 160 gK~~~~~evNFLCihk~lRsKRltPvLIkEiTRR~n~~~i 199 (451)
T COG5092 160 GKRSSVLEVNFLCIHKELRSKRLTPVLIKEITRRANVDGI 199 (451)
T ss_pred ccccccceEEEEEEehhhhhCccchHHHHHHHHhhhhhhh
Confidence 3444578999999999999999999999999998866553
No 159
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=35.50 E-value=1.2e+02 Score=21.81 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=20.1
Q ss_pred CcEEEEEEecCCHHHHHHHHHC----CCEEecc
Q 025854 192 ISDLYVHVAFDNEPAKKLYMKS----GFIFEND 220 (247)
Q Consensus 192 ~~~i~L~v~~~N~~A~~fY~k~----GF~~~~~ 220 (247)
+..+.+.|. +=+.+++||++. ||+....
T Consensus 2 i~Hv~i~v~-d~~~~~~Fy~~~l~~~G~~~~~~ 33 (128)
T cd07242 2 IHHVELTVR-DLERSRAFYDWLLGLLGFEEVKE 33 (128)
T ss_pred CceEEEEeC-CHHHHHHHHHHHHhhcCCEEEEe
Confidence 445666663 337889999995 9997665
No 160
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=35.34 E-value=94 Score=22.28 Aligned_cols=30 Identities=17% Similarity=0.150 Sum_probs=21.0
Q ss_pred cEEEEEEecCCHHHHHHHHH-CCCEEeccccc
Q 025854 193 SDLYVHVAFDNEPAKKLYMK-SGFIFENDEPA 223 (247)
Q Consensus 193 ~~i~L~v~~~N~~A~~fY~k-~GF~~~~~~~~ 223 (247)
..+.|.|.. =+.+.+||.+ +||+.......
T Consensus 4 ~hi~l~v~d-~~~~~~Fy~~~lG~~~~~~~~~ 34 (125)
T cd07255 4 GAVTLRVAD-LERSLAFYQDVLGLEVLERTDS 34 (125)
T ss_pred EEEEEEECC-HHHHHHHHHhccCcEEEEcCCC
Confidence 456666642 2678999987 89998776543
No 161
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=34.65 E-value=81 Score=23.36 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=34.5
Q ss_pred EEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEecc
Q 025854 159 AYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFEND 220 (247)
Q Consensus 159 ~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~ 220 (247)
..+-.+++.|+ -+-.+++.+.+.|+..+++.-...++.+.++-++.|.+..+.
T Consensus 56 iDlavv~~~~~---------~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 56 IDLAVVCVPPD---------KVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp -SEEEE-S-HH---------HHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-EEEES
T ss_pred CCEEEEEcCHH---------HHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCEEEeC
Confidence 33445665543 455666666777999999999999999999999999998764
No 162
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=34.45 E-value=68 Score=22.99 Aligned_cols=30 Identities=17% Similarity=0.467 Sum_probs=20.8
Q ss_pred CcEEEEEEecCCHHHHHHHHH-CCCEEecccc
Q 025854 192 ISDLYVHVAFDNEPAKKLYMK-SGFIFENDEP 222 (247)
Q Consensus 192 ~~~i~L~v~~~N~~A~~fY~k-~GF~~~~~~~ 222 (247)
+..+.+.|. +=+.+++||++ +||+......
T Consensus 5 i~hi~l~v~-d~~~~~~Fy~~~lG~~~~~~~~ 35 (121)
T cd07266 5 LGHVELRVT-DLEKSREFYVDVLGLVETEEDD 35 (121)
T ss_pred eeEEEEEcC-CHHHHHHHHHhccCCEEeccCC
Confidence 445666653 22779999988 9999865543
No 163
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=34.00 E-value=70 Score=24.58 Aligned_cols=45 Identities=20% Similarity=0.172 Sum_probs=33.5
Q ss_pred CcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEE
Q 025854 169 ELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIF 217 (247)
Q Consensus 169 ~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~ 217 (247)
+=||-|||+.+++.+.+...+ .+.+...-.|.-|-.--.|.|=..
T Consensus 6 DGQGGGiG~~iv~~lr~~~~~----~~eI~AlGTNa~AT~~MlKaGA~~ 50 (131)
T PF12953_consen 6 DGQGGGIGKQIVEKLRKELPE----EVEIIALGTNAIATSAMLKAGANE 50 (131)
T ss_pred eCCCChhHHHHHHHHHHhCCC----CcEEEEEehhHHHHHHHHHcCCCC
Confidence 348999999999998877543 355555567888888888887654
No 164
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=33.79 E-value=69 Score=22.75 Aligned_cols=24 Identities=25% Similarity=0.144 Sum_probs=17.0
Q ss_pred EEEecCCHHHHHHHHH-CCCEEeccc
Q 025854 197 VHVAFDNEPAKKLYMK-SGFIFENDE 221 (247)
Q Consensus 197 L~v~~~N~~A~~fY~k-~GF~~~~~~ 221 (247)
+.|. +=+.+.+||.+ +||+.....
T Consensus 7 l~v~-d~~~a~~FY~~~lG~~~~~~~ 31 (122)
T cd07246 7 LIVR-DAAAAIDFYKKAFGAEELERM 31 (122)
T ss_pred EEEC-CHHHHHHHHHHhhCCEEEEEE
Confidence 4443 33789999985 899976553
No 165
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=33.18 E-value=2.2e+02 Score=21.92 Aligned_cols=45 Identities=16% Similarity=0.185 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEEec-----------CCHHHHHHHHHCCCEEecc
Q 025854 176 GYEIVAKSKLVAQGWGISDLYVHVAF-----------DNEPAKKLYMKSGFIFEND 220 (247)
Q Consensus 176 G~~Ll~~~~~~a~~~g~~~i~L~v~~-----------~N~~A~~fY~k~GF~~~~~ 220 (247)
++...+.+.+.+++.|+..+.+.+.- ..+.|++-..+.|+++...
T Consensus 55 Aq~aae~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~I 110 (132)
T PRK09607 55 AMQAAEKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRI 110 (132)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEEE
Confidence 55667777788899999999998855 4578999999999996554
No 166
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=33.04 E-value=41 Score=25.69 Aligned_cols=30 Identities=10% Similarity=0.133 Sum_probs=21.0
Q ss_pred cCCcEEEEEEecCCHHHHHHHHH-CCCEEecc
Q 025854 190 WGISDLYVHVAFDNEPAKKLYMK-SGFIFEND 220 (247)
Q Consensus 190 ~g~~~i~L~v~~~N~~A~~fY~k-~GF~~~~~ 220 (247)
.++..+.|.|.. =++|++||+. +||+....
T Consensus 16 ~~i~hv~l~v~D-l~~a~~FY~~vLG~~~~~~ 46 (150)
T TIGR00068 16 RRLLHTMLRVGD-LDKSLDFYTEVLGMKLLRK 46 (150)
T ss_pred ceEEEEEEEecC-HHHHHHHHHHhcCCEEEEE
Confidence 355566676653 3789999985 89997543
No 167
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=32.82 E-value=48 Score=23.29 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=15.2
Q ss_pred HHHHHHHHH-CCCEEeccc
Q 025854 204 EPAKKLYMK-SGFIFENDE 221 (247)
Q Consensus 204 ~~A~~fY~k-~GF~~~~~~ 221 (247)
+++.+||.+ +||+.....
T Consensus 10 ~~~~~fY~~~lG~~~~~~~ 28 (119)
T cd07263 10 DKALAFYTEKLGFEVREDV 28 (119)
T ss_pred HHHHHHHHhccCeEEEEee
Confidence 778999998 999987654
No 168
>KOG3014 consensus Protein involved in establishing cohesion between sister chromatids during DNA replication [Replication, recombination and repair]
Probab=32.54 E-value=56 Score=27.96 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=28.3
Q ss_pred CCeEEEEEEEEccCcccCcHHHHHHHHHHHHHH
Q 025854 156 FARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQ 188 (247)
Q Consensus 156 ~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~ 188 (247)
+-.+-|..+.|.+.-|++||++.|++.+.....
T Consensus 181 ~~~~GIsRIWV~s~~Rr~gIAs~lldva~~~~~ 213 (257)
T KOG3014|consen 181 PAICGISRIWVSSLRRRKGIASLLLDVARCNFV 213 (257)
T ss_pred CcEeeeEEEEeehhhhhhhhHHHHHHHHHHhhh
Confidence 345778999999999999999999999886653
No 169
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=32.35 E-value=2.2e+02 Score=21.36 Aligned_cols=45 Identities=16% Similarity=0.224 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEEec-----------CCHHHHHHHHHCCCEEecc
Q 025854 176 GYEIVAKSKLVAQGWGISDLYVHVAF-----------DNEPAKKLYMKSGFIFEND 220 (247)
Q Consensus 176 G~~Ll~~~~~~a~~~g~~~i~L~v~~-----------~N~~A~~fY~k~GF~~~~~ 220 (247)
++...+.+.+.++++|+..+.+.+.- ..+.|++-..+.|+++...
T Consensus 48 Aq~aa~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~I 103 (114)
T TIGR03628 48 AMQAAGRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRI 103 (114)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEEE
Confidence 45667778888999999999998854 4588999999999997544
No 170
>COG2935 Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=31.71 E-value=1.2e+02 Score=26.00 Aligned_cols=47 Identities=15% Similarity=0.197 Sum_probs=39.4
Q ss_pred EEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEE
Q 025854 165 CVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIF 217 (247)
Q Consensus 165 ~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~ 217 (247)
+-+|++...++|+..+-.=+.+|++.|..-++|.-+..+- .|++|+.
T Consensus 181 FydPd~s~~SLGt~~iL~~I~~aq~~~l~yvYLGYwI~~c------~KM~YKa 227 (253)
T COG2935 181 FYDPDMSKRSLGTLSILDQIAIAQRLGLPYVYLGYWIKGC------PKMNYKA 227 (253)
T ss_pred EeCCChhhhcchHHHHHHHHHHHHHhCCCeEEEEEEECCc------cccCccc
Confidence 4499999999999999999999999999999998877763 4555554
No 171
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=31.21 E-value=45 Score=23.75 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=20.9
Q ss_pred cEEEEEEecCCHHHHHHHHH-CCCEEecccc
Q 025854 193 SDLYVHVAFDNEPAKKLYMK-SGFIFENDEP 222 (247)
Q Consensus 193 ~~i~L~v~~~N~~A~~fY~k-~GF~~~~~~~ 222 (247)
..+.+.|..- +.+++||++ +||+......
T Consensus 3 ~Hi~i~v~d~-~~~~~FY~~~lG~~~~~~~~ 32 (128)
T PF00903_consen 3 DHIAIRVKDL-EKAIDFYTDVLGFRLVEESD 32 (128)
T ss_dssp EEEEEEESCH-HHHHHHHHHTTTSEEEEEEE
T ss_pred EEEEEEcCCH-HHHHHHHHHHhCCcEEeeec
Confidence 3455555433 789999999 8999877665
No 172
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=31.20 E-value=20 Score=27.90 Aligned_cols=30 Identities=17% Similarity=0.164 Sum_probs=22.6
Q ss_pred CCcEEEEEEecCCHHHHHHHHHCCCEEeccc
Q 025854 191 GISDLYVHVAFDNEPAKKLYMKSGFIFENDE 221 (247)
Q Consensus 191 g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~ 221 (247)
|++.|+..+... ..+..+++++||+.++..
T Consensus 9 G~dFvEFa~~~~-~~l~~~~~~lGF~~~a~h 38 (139)
T PF14696_consen 9 GFDFVEFAVPDA-QALAQLFTALGFQPVARH 38 (139)
T ss_dssp EEEEEEEE-SST-TSCHHHHCCCCEEEECCE
T ss_pred CeEEEEEecCCH-HHHHHHHHHhCcceEEec
Confidence 677788776553 567789999999998864
No 173
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=30.95 E-value=81 Score=22.64 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=18.6
Q ss_pred EEEEEEecCC-HHHHHHHHH----CCCEEeccc
Q 025854 194 DLYVHVAFDN-EPAKKLYMK----SGFIFENDE 221 (247)
Q Consensus 194 ~i~L~v~~~N-~~A~~fY~k----~GF~~~~~~ 221 (247)
.+.|.| .| +.+++||++ +||......
T Consensus 3 hv~l~v--~d~~~s~~FY~~~f~~lg~~~~~~~ 33 (123)
T cd07262 3 HVTLGV--NDLERARAFYDAVLAPLGIKRVMED 33 (123)
T ss_pred EEEEec--CcHHHHHHHHHHHHhhcCceEEeec
Confidence 345555 44 778999998 599986554
No 174
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=30.85 E-value=1.2e+02 Score=23.63 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=21.4
Q ss_pred CCcEEEEEEecCCHHHHHHHHH-CCCEEecccc
Q 025854 191 GISDLYVHVAFDNEPAKKLYMK-SGFIFENDEP 222 (247)
Q Consensus 191 g~~~i~L~v~~~N~~A~~fY~k-~GF~~~~~~~ 222 (247)
|+..+.+.|.. =+.+++||++ +||+......
T Consensus 1 gl~HI~i~V~D-le~s~~FY~~~LG~~~~~~~~ 32 (157)
T cd08347 1 GLHGVTLTVRD-PEATAAFLTDVLGFREVGEEG 32 (157)
T ss_pred CcccEEEEeCC-HHHHHHHHHHhcCCEEEeeeC
Confidence 44556666643 3789999976 6999866543
No 175
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=30.23 E-value=74 Score=22.81 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=14.0
Q ss_pred HHHHHHHHH-CCCEEecc
Q 025854 204 EPAKKLYMK-SGFIFEND 220 (247)
Q Consensus 204 ~~A~~fY~k-~GF~~~~~ 220 (247)
+.+.+||++ +||+....
T Consensus 12 ~~s~~FY~~~lG~~~~~~ 29 (125)
T cd07264 12 EKTLEFYERAFGFERRFL 29 (125)
T ss_pred HHHHHHHHHhhCCeEEee
Confidence 789999988 79997543
No 176
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=30.01 E-value=2.3e+02 Score=20.87 Aligned_cols=46 Identities=24% Similarity=0.140 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEEEecC---CHHHHHHHHHCCCEEecc
Q 025854 175 LGYEIVAKSKLVAQGWGISDLYVHVAFD---NEPAKKLYMKSGFIFEND 220 (247)
Q Consensus 175 iG~~Ll~~~~~~a~~~g~~~i~L~v~~~---N~~A~~fY~k~GF~~~~~ 220 (247)
-+....+.+.+.+++.|+..+.+.+.-- .+.+++-..+.|+.+...
T Consensus 44 Aa~~~a~~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~I 92 (110)
T PF00411_consen 44 AAQQAAEKIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVSI 92 (110)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEEE
Confidence 3556777788888899999998887543 478889999999985443
No 177
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=29.98 E-value=1.6e+02 Score=22.18 Aligned_cols=37 Identities=14% Similarity=0.183 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHHHHHHcCC---cEEEEEEec---CCHHHHHHH
Q 025854 174 GLGYEIVAKSKLVAQGWGI---SDLYVHVAF---DNEPAKKLY 210 (247)
Q Consensus 174 GiG~~Ll~~~~~~a~~~g~---~~i~L~v~~---~N~~A~~fY 210 (247)
.+..++++.+.++|+++|. ..++|.+.. -|+.+.+|=
T Consensus 5 Sla~aii~~i~~~A~~~~a~~V~~V~l~IG~ls~v~~~~l~Fa 47 (115)
T COG0375 5 SLAQAIIELIEEQAEKHGAKRVTAVWLEIGELSCVEPEALRFA 47 (115)
T ss_pred HHHHHHHHHHHHHHHHcCCceEEEEEEEEcceeccCHHHHHHH
Confidence 5789999999999999987 556665532 367777774
No 178
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=29.46 E-value=61 Score=26.83 Aligned_cols=49 Identities=12% Similarity=0.203 Sum_probs=35.2
Q ss_pred cHHHHHHHHHHHHHHHc--CCcEEEEEEecCCHHHHHHHHHCCCEEecccc
Q 025854 174 GLGYEIVAKSKLVAQGW--GISDLYVHVAFDNEPAKKLYMKSGFIFENDEP 222 (247)
Q Consensus 174 GiG~~Ll~~~~~~a~~~--g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~~ 222 (247)
|+|-.|+..+++..... ....+.|.-..+...-+++-.++||....+..
T Consensus 74 GMGG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~E~l 124 (205)
T PF04816_consen 74 GMGGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGFEIIDEDL 124 (205)
T ss_dssp EE-HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTEEEEEEEE
T ss_pred cCCHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCCEEEEeEE
Confidence 78888999999887543 45667776665557788999999999888764
No 179
>PRK11478 putative lyase; Provisional
Probab=29.00 E-value=61 Score=23.53 Aligned_cols=27 Identities=19% Similarity=0.443 Sum_probs=18.5
Q ss_pred CcEEEEEEecCCHHHHHHHHH-CCCEEec
Q 025854 192 ISDLYVHVAFDNEPAKKLYMK-SGFIFEN 219 (247)
Q Consensus 192 ~~~i~L~v~~~N~~A~~fY~k-~GF~~~~ 219 (247)
+..+.+.|. +=+.+++||++ +||+...
T Consensus 7 i~hv~l~v~-D~~~a~~FY~~~LG~~~~~ 34 (129)
T PRK11478 7 VHHIAIIAT-DYAVSKAFYCDILGFTLQS 34 (129)
T ss_pred ecEEEEEcC-CHHHHHHHHHHHhCCEecc
Confidence 445556553 33789999965 8999754
No 180
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=28.94 E-value=1e+02 Score=22.26 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=20.3
Q ss_pred CcEEEEEEecCCHHHHHHHHH-CCCEEeccc
Q 025854 192 ISDLYVHVAFDNEPAKKLYMK-SGFIFENDE 221 (247)
Q Consensus 192 ~~~i~L~v~~~N~~A~~fY~k-~GF~~~~~~ 221 (247)
+..+.+.|. +=+.+++||++ +||+.....
T Consensus 2 i~hv~l~v~-d~~~~~~FY~~vLG~~~~~~~ 31 (121)
T cd07244 2 INHITLAVS-DLERSVAFYVDLLGFKLHVRW 31 (121)
T ss_pred cceEEEEEC-CHHHHHHHHHHhcCCEEEEec
Confidence 445666663 23789999987 899976543
No 181
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=28.70 E-value=90 Score=22.20 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=16.1
Q ss_pred ecCC-HHHHHHHHH-CCCEEeccc
Q 025854 200 AFDN-EPAKKLYMK-SGFIFENDE 221 (247)
Q Consensus 200 ~~~N-~~A~~fY~k-~GF~~~~~~ 221 (247)
...| +.+..||.+ +||+.....
T Consensus 8 ~v~D~~~s~~FY~~~lG~~~~~~~ 31 (119)
T cd08359 8 VTDDLAETADFYVRHFGFTVVFDS 31 (119)
T ss_pred EECCHHHHHHHHHHhhCcEEEecc
Confidence 3344 678999965 999987653
No 182
>PF09390 DUF1999: Protein of unknown function (DUF1999); InterPro: IPR018987 This family contains a putative Fe-S binding reductase (Q72J89 from SWISSPROT) whose structure adopts an alpha and beta fold. ; PDB: 2D4O_A 2D4P_A.
Probab=28.49 E-value=2.9e+02 Score=21.71 Aligned_cols=136 Identities=15% Similarity=0.124 Sum_probs=60.2
Q ss_pred EEecCccchhhHHHHHHHHhhhcccCCCccccc--hhhhhhhHHHHHHHHHHHhcCCCceeEEEE-EccccCceeeeeeh
Q 025854 66 VVDETTAEDQLWAAACLRVRSFHQFDPDSFGVQ--DHKKHLAEREFEAMKERIAGKRKEFRTVAC-INATLPLSQISSVS 142 (247)
Q Consensus 66 ~IR~a~~~D~~~~~a~l~~~~~~~~~p~~f~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~vg~~~~~ 142 (247)
.+|.....| +.+...+.+......+| .|..- .++..........++ .+. .....+++. ..+.+ .|++-..
T Consensus 2 ~yR~f~e~D-~~aL~ald~a~qr~~dP-~fd~lperer~gr~~tSl~Alr-fy~--RsgHSFvA~~e~~~~--~GfvLAQ 74 (161)
T PF09390_consen 2 RYRPFTEPD-FAALQALDLAAQRRTDP-AFDGLPEREREGRLSTSLAALR-FYE--RSGHSFVAEDEGGEL--QGFVLAQ 74 (161)
T ss_dssp EEE---GGG-HHHHHHC---------------------STTS---HHHHH-HHH--CCS--EEEE-ETTEE--EEEEEEE
T ss_pred cccccCccc-HHHHHHHhhhccccccc-cccccccccccccccCCHHHhh-hhh--ccCCcEEEEccCCce--eeeeehh
Confidence 467888888 88877776665554333 22111 111111112222232 222 223445666 55566 5555431
Q ss_pred hhhhhhhccCCCCCCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEec
Q 025854 143 EELCAECKGIGGDFARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFEN 219 (247)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~ 219 (247)
.. ...+....++..|.+.|. +....-.-||..+.+-|-..|+..+.+.+.. ....--+..||...+
T Consensus 75 aV-------WQGdrptVlV~ri~~~~~-~~~~~~~GLLrAvvKSAYDa~VYEv~l~l~p---~l~~A~~a~~~~~~~ 140 (161)
T PF09390_consen 75 AV-------WQGDRPTVLVRRILLAPG-EPEEVYEGLLRAVVKSAYDAGVYEVHLHLDP---ELEAAARAEGFRLGG 140 (161)
T ss_dssp EE-------E-SSSEEEEEEEE---EE-SSHHHHHHHHHHHHHHHHHTT-SEEEE---T---HHHHHHHHTT----S
T ss_pred HH-------hcCCCceEEEEEeecCCC-CcHHHHHHHHHHHHHhhhccceEEEEeeCCH---HHHHHHhhcccccCC
Confidence 11 122344567776665554 4568888899999999999999999998876 444556677888665
No 183
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=28.31 E-value=75 Score=22.23 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCHHHHHHHHH-CCCEEeccccc
Q 025854 192 ISDLYVHVAFDNEPAKKLYMK-SGFIFENDEPA 223 (247)
Q Consensus 192 ~~~i~L~v~~~N~~A~~fY~k-~GF~~~~~~~~ 223 (247)
+..+.+.|.. =+.++.||+. +||+.......
T Consensus 3 l~hv~l~v~d-l~~s~~FY~~~LG~~~~~~~~~ 34 (138)
T COG0346 3 IHHVTLAVPD-LEASIDFYTDVLGLRLVKDTVN 34 (138)
T ss_pred eEEEEEeeCC-HhHhHHHHHhhcCCeeeeeccc
Confidence 3445555543 3789999997 99998776543
No 184
>PRK10150 beta-D-glucuronidase; Provisional
Probab=28.14 E-value=2.4e+02 Score=27.32 Aligned_cols=70 Identities=13% Similarity=0.117 Sum_probs=52.6
Q ss_pred CCCeEEEEEEEEccCcc--cCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEecccccc
Q 025854 155 DFARAYLSNVCVAKELH--RNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFENDEPAW 224 (247)
Q Consensus 155 ~~~~~~I~~l~V~p~~R--g~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~~~~ 224 (247)
.....++..+.-++++- |.++-...+..-++.+|+.|+..|.+.-....+....+-.++|+-+..+.+.|
T Consensus 288 NG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~ 359 (604)
T PRK10150 288 NGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAV 359 (604)
T ss_pred CCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccc
Confidence 44566777777777654 44566777777788899999999999655556777888888999988776543
No 185
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=27.49 E-value=86 Score=22.29 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=17.6
Q ss_pred EEEEEEecCCHHHHHHHHH-CCCEEec
Q 025854 194 DLYVHVAFDNEPAKKLYMK-SGFIFEN 219 (247)
Q Consensus 194 ~i~L~v~~~N~~A~~fY~k-~GF~~~~ 219 (247)
.+.|.|. +=+.+++||++ +||+...
T Consensus 4 Hi~l~v~-dl~~s~~FY~~~lg~~~~~ 29 (125)
T cd07241 4 HVAIWTK-DLERMKAFYVTYFGATSNE 29 (125)
T ss_pred EEEEEec-CHHHHHHHHHHHhCCEeec
Confidence 4555554 23789999998 7998643
No 186
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=27.05 E-value=1.4e+02 Score=24.19 Aligned_cols=45 Identities=9% Similarity=0.127 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeccc
Q 025854 176 GYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFENDE 221 (247)
Q Consensus 176 G~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~ 221 (247)
|+.|+.++++.+++ .+..+++-+..+.+.-..+-++.|+++....
T Consensus 26 GkpLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~gv~vi~tp 70 (177)
T COG2266 26 GKPLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESVGVKVIETP 70 (177)
T ss_pred CccHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhcCceEEEcC
Confidence 78899999999887 7889999998888888999999998876653
No 187
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=27.04 E-value=95 Score=22.28 Aligned_cols=24 Identities=17% Similarity=0.020 Sum_probs=17.4
Q ss_pred EEEecCCHHHHHHHH-HCCCEEeccc
Q 025854 197 VHVAFDNEPAKKLYM-KSGFIFENDE 221 (247)
Q Consensus 197 L~v~~~N~~A~~fY~-k~GF~~~~~~ 221 (247)
|.|. +=++|++||+ .+||+.....
T Consensus 5 l~v~-d~~~a~~FY~~~lG~~~~~~~ 29 (122)
T cd08355 5 LRYR-DAAAAIDWLTDAFGFEERLVV 29 (122)
T ss_pred EEEC-CHHHHHHHHHHhcCCEEEEEE
Confidence 4442 3378999998 7999987553
No 188
>COG5653 Protein involved in cellulose biosynthesis (CelD) [Cell envelope biogenesis, outer membrane]
Probab=26.84 E-value=4.8e+02 Score=24.12 Aligned_cols=40 Identities=18% Similarity=0.104 Sum_probs=35.4
Q ss_pred EEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecC
Q 025854 163 NVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFD 202 (247)
Q Consensus 163 ~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~ 202 (247)
-..++|++=+--=|..|+-.+++++...|+..+-+.|..+
T Consensus 300 l~a~dpe~~~~SPG~~lf~d~i~~~~~~g~~~~DfgvG~q 339 (406)
T COG5653 300 LGAIDPEFARASPGMLLFLDLIEWACGQGLARFDFGVGDQ 339 (406)
T ss_pred eeccCHHHhhcCchHHHHHHHHHHHhcCCCeEEeecCCCh
Confidence 3678999999999999999999999999998888877654
No 189
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=26.68 E-value=95 Score=22.83 Aligned_cols=17 Identities=18% Similarity=0.428 Sum_probs=13.9
Q ss_pred HHHHHHHHH-CCCEEecc
Q 025854 204 EPAKKLYMK-SGFIFEND 220 (247)
Q Consensus 204 ~~A~~fY~k-~GF~~~~~ 220 (247)
+.+++||++ +||+....
T Consensus 11 ~~a~~Fy~~~lG~~~~~~ 28 (131)
T cd08343 11 AATAAFYTEVLGFRVSDR 28 (131)
T ss_pred HHHHHHHHhcCCCEEEEE
Confidence 778999987 89997543
No 190
>cd04263 DUF619-NAGK-FABP DUF619 domain of N-acetylglutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway. DUF619-NAGK-FABP: DUF619 domain of N-acetylglutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (FABP). The nuclear-encoded, mitochondrial polyprotein precursor (ARG5,6) consists of an N-terminal NAGK (ArgB) domain, a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved into two distinct enzymes (NAGK-DUF619 and NAGPR) in the mitochondria. Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. Arg5,6 catalyzes the second reaction of arginine biosynthesis; the phosphorylation of the gamma-carboxyl group of NAG to produce N-acetylglutamylphosphate (NAGP) which is subsequently converted to ornithine in two more steps. It also binds and regulates the promoters of nuclear and mitochondrial genes, and may possibly regu
Probab=26.61 E-value=2.5e+02 Score=20.36 Aligned_cols=44 Identities=23% Similarity=0.090 Sum_probs=36.3
Q ss_pred CCeEEEEEEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCH
Q 025854 156 FARAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNE 204 (247)
Q Consensus 156 ~~~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~ 204 (247)
....+|..+.|..+-++.|++..+.+.+.+. ..++...+..+|+
T Consensus 31 ~~vp~LdkF~vs~~~~l~~vaD~Vf~~i~~d-----~p~L~W~~r~~n~ 74 (98)
T cd04263 31 GEVATLATFTITKSGWLNNVADNIFTAIKKD-----HPKLVWTVREDDE 74 (98)
T ss_pred CCCEEEEEEEEccccccccHHHHHHHHHHhh-----CCeeEEEeCCCCC
Confidence 4578999999999999999999999987754 4578777777765
No 191
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=26.59 E-value=1.3e+02 Score=20.81 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=15.3
Q ss_pred HHHHHHHHH-CCCEEeccc
Q 025854 204 EPAKKLYMK-SGFIFENDE 221 (247)
Q Consensus 204 ~~A~~fY~k-~GF~~~~~~ 221 (247)
..+++||++ +||+.....
T Consensus 10 ~~s~~FY~~~lg~~~~~~~ 28 (112)
T cd08349 10 ERSLAFYRDVLGFEVDWEH 28 (112)
T ss_pred HHHHHHHHhccCeEEEEEc
Confidence 779999999 999976655
No 192
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=26.40 E-value=84 Score=23.89 Aligned_cols=28 Identities=4% Similarity=0.120 Sum_probs=19.7
Q ss_pred CcEEEEEEecCCHHHHHHHHH-CCCEEecc
Q 025854 192 ISDLYVHVAFDNEPAKKLYMK-SGFIFEND 220 (247)
Q Consensus 192 ~~~i~L~v~~~N~~A~~fY~k-~GF~~~~~ 220 (247)
+..+.|.|.. -+++++||++ +||+....
T Consensus 7 l~Hv~l~v~D-le~s~~FY~~vLGf~~~~~ 35 (143)
T cd07243 7 LDHCLLTGED-IAETTRFFTDVLDFYLAER 35 (143)
T ss_pred eCEEEEecCC-HHHHHHHHHHhcCCEEEEE
Confidence 4456666653 3789999977 99986544
No 193
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=26.34 E-value=1.9e+02 Score=20.54 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=18.8
Q ss_pred EEEEEecCC-HHHHHHHHH-CCCEEecccc
Q 025854 195 LYVHVAFDN-EPAKKLYMK-SGFIFENDEP 222 (247)
Q Consensus 195 i~L~v~~~N-~~A~~fY~k-~GF~~~~~~~ 222 (247)
+++.....| +.+.+||++ +||+......
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~ 32 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD 32 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC
Confidence 344444455 789999987 5998765543
No 194
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=26.29 E-value=1.1e+02 Score=22.43 Aligned_cols=28 Identities=25% Similarity=0.449 Sum_probs=19.2
Q ss_pred EEEEEEecCCHHHHHHHHH-CCCEEecccc
Q 025854 194 DLYVHVAFDNEPAKKLYMK-SGFIFENDEP 222 (247)
Q Consensus 194 ~i~L~v~~~N~~A~~fY~k-~GF~~~~~~~ 222 (247)
.+.+.|. +=..+++||++ +||+......
T Consensus 4 hv~l~v~-D~~~s~~FY~~~lG~~~~~~~~ 32 (134)
T cd08348 4 HVVLYVR-DLEAMVRFYRDVLGFTVTDRGP 32 (134)
T ss_pred EEEEEec-CHHHHHHHHHHhcCCEEEeecc
Confidence 3445443 22778999988 9999876554
No 195
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=25.78 E-value=97 Score=23.83 Aligned_cols=29 Identities=21% Similarity=0.525 Sum_probs=21.8
Q ss_pred CCcEEEEEEecCCHHHHHHHHH-CCCEEecc
Q 025854 191 GISDLYVHVAFDNEPAKKLYMK-SGFIFEND 220 (247)
Q Consensus 191 g~~~i~L~v~~~N~~A~~fY~k-~GF~~~~~ 220 (247)
++..+.|.|. +=+++++||++ +||+....
T Consensus 9 ~l~Hi~l~v~-Dl~~a~~FY~~~LGl~~~~~ 38 (154)
T cd07237 9 GLGHVVLATP-DPDEAHAFYRDVLGFRLSDE 38 (154)
T ss_pred ccCEEEEEeC-CHHHHHHHHHHccCCEEEEE
Confidence 5667777775 34789999987 99997553
No 196
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=24.71 E-value=73 Score=22.80 Aligned_cols=28 Identities=29% Similarity=0.271 Sum_probs=20.2
Q ss_pred cEEEEEEecCCHHHHHHHHH-CCCEEeccc
Q 025854 193 SDLYVHVAFDNEPAKKLYMK-SGFIFENDE 221 (247)
Q Consensus 193 ~~i~L~v~~~N~~A~~fY~k-~GF~~~~~~ 221 (247)
..+.|.|. +=.++.+||++ +||+.....
T Consensus 2 ~hv~l~v~-d~~~~~~fy~~~lG~~~~~~~ 30 (128)
T cd07249 2 DHIGIAVP-DLEAAIKFYRDVLGVGPWEEE 30 (128)
T ss_pred cEEEEEeC-CHHHHHHHHHHhhCCCCcccc
Confidence 34667664 33779999998 999986554
No 197
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=24.33 E-value=93 Score=24.16 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCE
Q 025854 176 GYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFI 216 (247)
Q Consensus 176 G~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~ 216 (247)
|+-|++++++.++..++..+.+.+...+......+...|..
T Consensus 25 g~~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~~~~~ 65 (186)
T cd04182 25 GKPLLRHALDAALAAGLSRVIVVLGAEADAVRAALAGLPVV 65 (186)
T ss_pred CeeHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcCCCeE
Confidence 68899999999988788888776655444444444455654
No 198
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=24.27 E-value=1.1e+02 Score=21.66 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=17.5
Q ss_pred EEEEEecCCHHHHHHHHH-CCCEEecc
Q 025854 195 LYVHVAFDNEPAKKLYMK-SGFIFEND 220 (247)
Q Consensus 195 i~L~v~~~N~~A~~fY~k-~GF~~~~~ 220 (247)
+.+.|. +=+.|.+||++ +||+....
T Consensus 4 v~i~v~-d~~~a~~fY~~~lG~~~~~~ 29 (121)
T cd07233 4 TMLRVK-DLEKSLDFYTDVLGMKLLRR 29 (121)
T ss_pred EEEEec-CcHHHHHHHHhccCCeEEEE
Confidence 445553 33789999987 59997654
No 199
>PRK10291 glyoxalase I; Provisional
Probab=24.27 E-value=68 Score=23.51 Aligned_cols=17 Identities=12% Similarity=0.272 Sum_probs=14.1
Q ss_pred HHHHHHHHH-CCCEEecc
Q 025854 204 EPAKKLYMK-SGFIFEND 220 (247)
Q Consensus 204 ~~A~~fY~k-~GF~~~~~ 220 (247)
+.++.||++ +||+....
T Consensus 8 e~s~~FY~~~LG~~~~~~ 25 (129)
T PRK10291 8 QRSIDFYTNVLGMKLLRT 25 (129)
T ss_pred HHHHHHHHhccCCEEEEe
Confidence 789999977 99997653
No 200
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=24.15 E-value=1.6e+02 Score=23.94 Aligned_cols=45 Identities=11% Similarity=0.187 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEEecCC--HHHHHHHHHCCCEEecc
Q 025854 176 GYEIVAKSKLVAQGWGISDLYVHVAFDN--EPAKKLYMKSGFIFEND 220 (247)
Q Consensus 176 G~~Ll~~~~~~a~~~g~~~i~L~v~~~N--~~A~~fY~k~GF~~~~~ 220 (247)
--.+++.+++..++.|...+.+.-.... ....+.|+..||.....
T Consensus 21 ~P~vv~avv~~l~~~g~~~i~i~e~~~~~~~~~~~~~~~~G~~~~~~ 67 (206)
T PF04015_consen 21 HPEVVRAVVEMLKEAGAKEIIIAESPGSGAADTREVFKRSGYEEIAE 67 (206)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEeCCCcchHhHHHHHHHcchhhHHH
Confidence 3468999999999999886666543333 57889999999996654
No 201
>CHL00041 rps11 ribosomal protein S11
Probab=23.84 E-value=3.1e+02 Score=20.43 Aligned_cols=45 Identities=11% Similarity=0.123 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEEe---cCCHHHHHHHHHCCCEEecc
Q 025854 176 GYEIVAKSKLVAQGWGISDLYVHVA---FDNEPAKKLYMKSGFIFEND 220 (247)
Q Consensus 176 G~~Ll~~~~~~a~~~g~~~i~L~v~---~~N~~A~~fY~k~GF~~~~~ 220 (247)
+....+.+.+.+.+.|+..+.+.+. ...+.+++-.++.|+++...
T Consensus 58 a~~~a~~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~~I 105 (116)
T CHL00041 58 AQTAAENAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLSSI 105 (116)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEE
Confidence 5566677788889999999999874 34578888888999986543
No 202
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=23.36 E-value=2.5e+02 Score=19.06 Aligned_cols=40 Identities=10% Similarity=0.057 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEE
Q 025854 175 LGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIF 217 (247)
Q Consensus 175 iG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~ 217 (247)
-|-.++..+.+.+++.|.+ +.+..-|....+++++.|+..
T Consensus 54 ~g~~~L~~l~~~~~~~g~~---v~i~~~~~~~~~~l~~~gl~~ 93 (99)
T cd07043 54 SGLGVLLGAYKRARAAGGR---LVLVNVSPAVRRVLELTGLDR 93 (99)
T ss_pred hhHHHHHHHHHHHHHcCCe---EEEEcCCHHHHHHHHHhCcce
Confidence 4556777788888887754 444455788999999999874
No 203
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=23.10 E-value=98 Score=21.70 Aligned_cols=18 Identities=11% Similarity=0.106 Sum_probs=14.8
Q ss_pred HHHHHHHHH-CCCEEeccc
Q 025854 204 EPAKKLYMK-SGFIFENDE 221 (247)
Q Consensus 204 ~~A~~fY~k-~GF~~~~~~ 221 (247)
+++++||++ +||+.....
T Consensus 10 ~~s~~Fy~~~lg~~~~~~~ 28 (113)
T cd08345 10 NKSIAFYRDILGAELIYSS 28 (113)
T ss_pred HHHHHHHHHhcCCeeeecc
Confidence 789999999 899976543
No 204
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=22.78 E-value=88 Score=21.10 Aligned_cols=20 Identities=25% Similarity=0.205 Sum_probs=16.4
Q ss_pred CHHHHHHHHH-CCCEEecccc
Q 025854 203 NEPAKKLYMK-SGFIFENDEP 222 (247)
Q Consensus 203 N~~A~~fY~k-~GF~~~~~~~ 222 (247)
-..+.+||.+ +||+......
T Consensus 9 ~~~~~~fy~~~lg~~~~~~~~ 29 (112)
T cd06587 9 LEAAVAFYEEVLGFEVLFRNG 29 (112)
T ss_pred HHHHHHHHHhccCCEEEEeec
Confidence 4779999998 9999777654
No 205
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=22.08 E-value=3.4e+02 Score=23.32 Aligned_cols=67 Identities=12% Similarity=0.114 Sum_probs=41.7
Q ss_pred CeEEEEEEEEccCcccC--cHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeccccc
Q 025854 157 ARAYLSNVCVAKELHRN--GLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFENDEPA 223 (247)
Q Consensus 157 ~~~~I~~l~V~p~~Rg~--GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~~~ 223 (247)
...+|..+.-++++-.. .+-...+..=+..+|+.|+..|.++-....+.-..+-.++|+-+..+.+.
T Consensus 13 k~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~ 81 (298)
T PF02836_consen 13 KPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPL 81 (298)
T ss_dssp EEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-
T ss_pred EEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccc
Confidence 34567777777766444 45667777778889999999999966666677777778899998766554
No 206
>PLN02300 lactoylglutathione lyase
Probab=22.01 E-value=1.1e+02 Score=26.24 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=19.8
Q ss_pred CCcEEEEEEecCCHHHHHHHHH-CCCEEecc
Q 025854 191 GISDLYVHVAFDNEPAKKLYMK-SGFIFEND 220 (247)
Q Consensus 191 g~~~i~L~v~~~N~~A~~fY~k-~GF~~~~~ 220 (247)
++..+.|.|.. =+.+++||++ +||+....
T Consensus 24 ~l~Hv~l~V~D-le~s~~FY~~vLG~~~~~~ 53 (286)
T PLN02300 24 RMLHVVYRVGD-LDRTIKFYTECLGMKLLRK 53 (286)
T ss_pred eEEEEEEEeCC-HHHHHHHHHHhcCCEEEEe
Confidence 34455555542 3789999977 79998654
No 207
>PRK14968 putative methyltransferase; Provisional
Probab=21.36 E-value=1.9e+02 Score=22.57 Aligned_cols=44 Identities=14% Similarity=-0.031 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEecc
Q 025854 177 YEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFEND 220 (247)
Q Consensus 177 ~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~ 220 (247)
..+++.+...++..|.-.+.......++....+.++.||+....
T Consensus 128 ~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 171 (188)
T PRK14968 128 DRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVV 171 (188)
T ss_pred HHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeee
Confidence 34566666666665632222222334577899999999987554
No 208
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=21.26 E-value=1.2e+02 Score=22.34 Aligned_cols=29 Identities=14% Similarity=0.069 Sum_probs=21.1
Q ss_pred CCcEEEEEEecCCHHHHHHHHH-CCCEEecc
Q 025854 191 GISDLYVHVAFDNEPAKKLYMK-SGFIFEND 220 (247)
Q Consensus 191 g~~~i~L~v~~~N~~A~~fY~k-~GF~~~~~ 220 (247)
|+..+.|.|. +-+.+++||++ +||....+
T Consensus 4 ~i~hv~l~V~-dl~~s~~FY~~~lG~~~~~~ 33 (131)
T cd08364 4 GLSHITLIVK-DLNKTTAFLQNIFNAREVYS 33 (131)
T ss_pred cEeEEEEEeC-CHHHHHHHHHHHhCCeeEEe
Confidence 4566777764 44789999977 89986544
No 209
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=21.21 E-value=38 Score=23.55 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=17.5
Q ss_pred EEEEEEecCCHHHHHHHHHC
Q 025854 194 DLYVHVAFDNEPAKKLYMKS 213 (247)
Q Consensus 194 ~i~L~v~~~N~~A~~fY~k~ 213 (247)
.++|.++.+|..|+..|.++
T Consensus 19 ~LyLDTHP~d~~Al~~y~~~ 38 (78)
T PF12652_consen 19 NLYLDTHPDDQEALEYYNEY 38 (78)
T ss_pred HHHhcCCCCcHHHHHHHHHH
Confidence 38899999999999999874
No 210
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=21.19 E-value=1.1e+02 Score=21.89 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=17.7
Q ss_pred EEEEEEecCCHHHHHHHHH-CCCEEec
Q 025854 194 DLYVHVAFDNEPAKKLYMK-SGFIFEN 219 (247)
Q Consensus 194 ~i~L~v~~~N~~A~~fY~k-~GF~~~~ 219 (247)
.+.|.|. +-+++++||++ +||+...
T Consensus 5 ~~~l~v~-D~~~a~~FY~~~lG~~~~~ 30 (120)
T cd09011 5 NPLLVVK-DIEKSKKFYEKVLGLKVVM 30 (120)
T ss_pred EEEEEEC-CHHHHHHHHHHhcCCEEee
Confidence 3445553 34889999986 9999754
No 211
>PF11039 DUF2824: Protein of unknown function (DUF2824); InterPro: IPR022568 This family of proteins has no known function. Members of the family are found in P22-like viruses and bacteria. Some of the phage members have been annotated as head assembly proteins, but this has not been confirmed.
Probab=21.06 E-value=4e+02 Score=20.66 Aligned_cols=64 Identities=6% Similarity=-0.126 Sum_probs=39.7
Q ss_pred eEEEEEEEEccCcccCcHHHHHHHHHHHHHHHc-CCcEEEEEEecCCHHHHHHHHHCCCEEecccccc
Q 025854 158 RAYLSNVCVAKELHRNGLGYEIVAKSKLVAQGW-GISDLYVHVAFDNEPAKKLYMKSGFIFENDEPAW 224 (247)
Q Consensus 158 ~~~I~~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~-g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~~~~ 224 (247)
..+.+.++ +|++|| ++...-....+|.-+. .+.-+.-.|...-.-.+-.-+-+|.+.+|....+
T Consensus 62 ~vecHa~y-~P~fRG--~a~~~~~~F~kwlL~Ns~f~~vit~vp~kt~~Grvic~llg~~RVG~id~~ 126 (151)
T PF11039_consen 62 VVECHAMY-DPGFRG--YALEIGRLFCKWLLENSPFQNVITFVPDKTRYGRVICRLLGARRVGHIDDY 126 (151)
T ss_pred eEEEEeee-ccccch--hHHHHHHHHHHHHhcCCceeEEEEecccccccchhHhhhhCCceeeeHHHH
Confidence 34445555 999999 7777777777777654 4444433343333334445555799988886654
No 212
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=20.50 E-value=3.2e+02 Score=24.92 Aligned_cols=62 Identities=19% Similarity=0.330 Sum_probs=46.8
Q ss_pred EEEEccCcccCcHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEe-cccccccc
Q 025854 163 NVCVAKELHRNGLGYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFE-NDEPAWHA 226 (247)
Q Consensus 163 ~l~V~p~~Rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~-~~~~~~~~ 226 (247)
.+.+++......+...|++.+.+.+++.|+..+.+. -.++.-....+..||... +....|..
T Consensus 105 R~l~~~~~~~~~~~~~L~~~~~~~a~~~~~Ss~h~l--F~~~~~~~~l~~~G~~~r~~~qf~W~N 167 (370)
T PF04339_consen 105 RLLIAPGADRAALRAALLQALEQLAEENGLSSWHIL--FPDEEDAAALEEAGFLSRQGVQFHWHN 167 (370)
T ss_pred ceeECCCCCHHHHHHHHHHHHHHHHHHcCCCcceee--cCCHHHHHHHHhCCCceecCCceEEec
Confidence 577789999999999999999999999999877664 233445566789999864 33444554
No 213
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=20.35 E-value=1.1e+02 Score=23.77 Aligned_cols=27 Identities=19% Similarity=0.381 Sum_probs=18.9
Q ss_pred CcEEEEEEecCCHHHHHHHHH-CCCEEec
Q 025854 192 ISDLYVHVAFDNEPAKKLYMK-SGFIFEN 219 (247)
Q Consensus 192 ~~~i~L~v~~~N~~A~~fY~k-~GF~~~~ 219 (247)
+..+.|.|. +=+.+++||++ +||+...
T Consensus 4 l~Hv~l~V~-Dl~~s~~FY~~vLGl~~~~ 31 (161)
T cd07256 4 LDHFNLRVP-DVDAGLAYYRDELGFRVSE 31 (161)
T ss_pred EEEEEEecC-CHHHHHHHHHhccCCEEEE
Confidence 345556554 23789999988 8998753
No 214
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=20.21 E-value=1e+02 Score=22.68 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=18.9
Q ss_pred EEEEecCCHHHHHHHHH-CCCEEeccc
Q 025854 196 YVHVAFDNEPAKKLYMK-SGFIFENDE 221 (247)
Q Consensus 196 ~L~v~~~N~~A~~fY~k-~GF~~~~~~ 221 (247)
+|.+..+-+.|+.||++ +||++....
T Consensus 4 ~L~~~~~~~eAi~FY~~~fg~~~~~~~ 30 (128)
T cd06588 4 YLWFNGNAEEALEFYQSVFGGEITSLT 30 (128)
T ss_pred EEeeCCCHHHHHHHHHHHhCCEeEEEE
Confidence 45554444889999986 899976654
No 215
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=20.05 E-value=1.2e+02 Score=23.19 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeccc
Q 025854 176 GYEIVAKSKLVAQGWGISDLYVHVAFDNEPAKKLYMKSGFIFENDE 221 (247)
Q Consensus 176 G~~Ll~~~~~~a~~~g~~~i~L~v~~~N~~A~~fY~k~GF~~~~~~ 221 (247)
|+-|++++++.+++.|++.|++.+.. +.-...+.+.|++.+...
T Consensus 23 g~~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~~~~~~v~~~ 66 (160)
T PF12804_consen 23 GKPLIERVLEALREAGVDDIVVVTGE--EEIYEYLERYGIKVVVDP 66 (160)
T ss_dssp TEEHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTTTTSEEEE-S
T ss_pred CccHHHHHHHHhhccCCceEEEecCh--HHHHHHHhccCceEEEec
Confidence 56789999999999899889876654 333445567888876554
Done!