Query 025856
Match_columns 247
No_of_seqs 202 out of 577
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 19:07:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025856.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025856hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3chm_A COP9 signalosome comple 100.0 3.6E-51 1.2E-55 344.3 14.2 168 2-169 2-169 (169)
2 4b4t_O 26S proteasome regulato 100.0 3.3E-35 1.1E-39 275.2 7.2 171 22-194 210-390 (393)
3 3txn_A 26S proteasome regulato 99.4 1E-12 3.5E-17 123.2 12.0 159 24-187 221-389 (394)
4 4b4t_P 26S proteasome regulato 99.0 1.1E-09 3.9E-14 103.4 9.4 162 24-198 259-436 (445)
5 4b4t_R RPN7, 26S proteasome re 98.8 1.8E-08 6.3E-13 94.5 11.0 135 25-161 249-397 (429)
6 3t5x_A PCI domain-containing p 98.6 2.8E-08 9.4E-13 85.0 3.6 97 60-157 81-193 (203)
7 4b4t_Q 26S proteasome regulato 98.5 7E-08 2.4E-12 86.5 6.0 122 59-192 296-427 (434)
8 1ufm_A COP9 complex subunit 4; 98.4 9.4E-07 3.2E-11 65.6 7.1 63 94-158 15-77 (84)
9 4b4t_S RPN3, 26S proteasome re 98.1 2.1E-06 7.1E-11 82.9 4.0 94 60-154 343-445 (523)
10 3t5v_B Nuclear mRNA export pro 97.6 2.6E-05 9E-10 74.2 3.4 95 62-157 299-429 (455)
11 4b0z_A RPN12, 26S proteasome r 93.8 0.089 3.1E-06 45.1 5.8 100 34-134 108-214 (229)
12 1wi9_A Protein C20ORF116 homol 92.7 0.13 4.6E-06 36.7 4.3 54 100-155 12-65 (72)
13 3df8_A Possible HXLR family tr 87.4 2.7 9.2E-05 31.4 7.9 80 94-182 27-107 (111)
14 2hzt_A Putative HTH-type trans 87.0 4.9 0.00017 29.5 9.1 70 107-181 25-95 (107)
15 1qbj_A Protein (double-strande 84.0 2.8 9.7E-05 30.0 6.2 58 94-154 12-69 (81)
16 1i1g_A Transcriptional regulat 83.2 0.94 3.2E-05 34.7 3.6 71 106-178 15-88 (141)
17 3r0a_A Putative transcriptiona 82.4 2.5 8.5E-05 32.1 5.7 81 102-188 34-118 (123)
18 1qgp_A Protein (double strande 80.8 3.7 0.00013 28.9 5.7 48 96-145 18-65 (77)
19 4a5n_A Uncharacterized HTH-typ 79.9 16 0.00054 28.3 9.6 78 95-181 27-107 (131)
20 4b4t_T 26S proteasome regulato 79.0 4.2 0.00014 35.6 6.7 96 37-132 117-222 (274)
21 2cg4_A Regulatory protein ASNC 75.9 3.6 0.00012 31.9 4.9 47 100-148 13-62 (152)
22 2d1h_A ST1889, 109AA long hypo 75.7 15 0.00051 25.8 7.9 73 103-182 30-105 (109)
23 1z7u_A Hypothetical protein EF 75.5 17 0.00057 26.7 8.3 68 108-180 34-102 (112)
24 1ub9_A Hypothetical protein PH 75.2 12 0.0004 26.2 7.2 39 107-147 28-66 (100)
25 2p5v_A Transcriptional regulat 74.7 3.1 0.00011 32.8 4.2 46 101-148 16-64 (162)
26 2cfx_A HTH-type transcriptiona 74.6 3.1 0.00011 32.1 4.1 47 100-148 10-59 (144)
27 2dbb_A Putative HTH-type trans 74.5 3.3 0.00011 32.1 4.3 47 100-148 14-63 (151)
28 1yyv_A Putative transcriptiona 74.2 14 0.00048 28.3 7.8 79 94-179 35-114 (131)
29 2fsw_A PG_0823 protein; alpha- 73.9 13 0.00044 27.0 7.3 66 107-179 36-104 (107)
30 3t8r_A Staphylococcus aureus C 73.9 4.9 0.00017 31.4 5.2 57 95-154 14-70 (143)
31 2gxg_A 146AA long hypothetical 73.9 15 0.00052 27.3 7.9 43 107-151 48-90 (146)
32 2e1c_A Putative HTH-type trans 73.6 2.3 7.9E-05 34.3 3.2 42 105-148 37-81 (171)
33 2pn6_A ST1022, 150AA long hypo 73.5 7.8 0.00027 29.8 6.3 47 100-148 8-57 (150)
34 3lwf_A LIN1550 protein, putati 73.3 6.3 0.00022 31.6 5.8 65 87-154 22-86 (159)
35 3bpv_A Transcriptional regulat 73.1 11 0.00037 27.8 6.8 46 107-154 41-86 (138)
36 2kko_A Possible transcriptiona 73.1 15 0.00052 26.8 7.5 63 108-180 37-99 (108)
37 1lj9_A Transcriptional regulat 71.5 12 0.00043 27.7 6.9 42 108-151 42-83 (144)
38 2ia0_A Putative HTH-type trans 71.3 3.6 0.00012 33.1 3.9 42 105-148 27-71 (171)
39 1sfx_A Conserved hypothetical 70.5 22 0.00077 24.7 7.8 38 108-147 33-70 (109)
40 2cyy_A Putative HTH-type trans 70.5 2.9 9.8E-05 32.6 3.0 42 100-143 12-53 (151)
41 3g3z_A NMB1585, transcriptiona 70.1 20 0.00068 26.7 7.8 41 109-151 45-85 (145)
42 1ku9_A Hypothetical protein MJ 70.1 18 0.00063 26.7 7.6 61 87-154 24-85 (152)
43 2y75_A HTH-type transcriptiona 69.4 13 0.00046 27.8 6.6 49 94-144 11-59 (129)
44 3cuo_A Uncharacterized HTH-typ 69.1 14 0.00048 25.8 6.4 41 105-147 34-74 (99)
45 2fbh_A Transcriptional regulat 68.5 18 0.0006 26.8 7.1 45 106-152 49-93 (146)
46 3i4p_A Transcriptional regulat 68.0 8.6 0.00029 30.3 5.4 48 100-149 8-58 (162)
47 2oqg_A Possible transcriptiona 67.4 31 0.0011 24.6 9.5 37 108-146 33-69 (114)
48 4aik_A Transcriptional regulat 67.0 19 0.00066 27.7 7.3 65 87-158 29-93 (151)
49 1ylf_A RRF2 family protein; st 64.3 9.5 0.00032 29.8 5.0 48 95-145 17-64 (149)
50 3kp7_A Transcriptional regulat 63.8 11 0.00038 28.5 5.2 44 106-151 48-93 (151)
51 2f2e_A PA1607; transcription f 63.5 25 0.00085 27.2 7.3 42 107-150 35-76 (146)
52 1oyi_A Double-stranded RNA-bin 63.1 12 0.00041 27.0 4.8 45 93-143 18-62 (82)
53 4hbl_A Transcriptional regulat 62.9 14 0.00049 27.9 5.7 44 107-152 53-96 (149)
54 3f6o_A Probable transcriptiona 62.1 21 0.00073 26.3 6.4 38 108-147 30-67 (118)
55 3k0l_A Repressor protein; heli 60.9 17 0.00058 27.9 5.9 47 108-156 59-105 (162)
56 3s2w_A Transcriptional regulat 60.6 14 0.00047 28.3 5.3 46 108-155 63-108 (159)
57 3deu_A Transcriptional regulat 59.8 30 0.001 26.8 7.2 47 107-155 66-112 (166)
58 1xd7_A YWNA; structural genomi 59.1 15 0.0005 28.5 5.2 34 111-146 25-58 (145)
59 3bja_A Transcriptional regulat 59.1 13 0.00046 27.2 4.8 43 107-151 45-87 (139)
60 3jth_A Transcription activator 58.5 29 0.00098 24.4 6.4 39 108-148 35-73 (98)
61 3k69_A Putative transcription 58.4 16 0.00055 29.1 5.4 55 95-153 15-69 (162)
62 3gpv_A Transcriptional regulat 58.1 41 0.0014 26.2 7.7 103 109-220 16-132 (148)
63 1xn7_A Hypothetical protein YH 57.8 11 0.00038 26.7 3.8 42 99-142 6-47 (78)
64 2v79_A DNA replication protein 56.9 60 0.0021 25.0 8.4 72 95-178 36-110 (135)
65 2eth_A Transcriptional regulat 56.8 25 0.00085 26.6 6.1 42 108-151 57-98 (154)
66 2rdp_A Putative transcriptiona 56.7 20 0.00069 26.7 5.5 44 108-153 55-98 (150)
67 2htj_A P fimbrial regulatory p 56.0 22 0.00075 24.4 5.2 36 107-144 12-47 (81)
68 3oop_A LIN2960 protein; protei 54.8 16 0.00056 27.2 4.7 42 108-151 50-91 (143)
69 3nrv_A Putative transcriptiona 54.4 14 0.00047 27.7 4.2 42 108-151 53-94 (148)
70 2fbi_A Probable transcriptiona 54.1 48 0.0016 24.2 7.2 45 108-154 49-93 (142)
71 1s3j_A YUSO protein; structura 53.9 23 0.00078 26.6 5.4 43 107-151 49-91 (155)
72 2eqb_B RAB guanine nucleotide 53.3 55 0.0019 24.3 7.1 31 194-224 66-96 (97)
73 3hsr_A HTH-type transcriptiona 52.9 31 0.001 25.7 6.0 47 106-154 47-93 (140)
74 3cjn_A Transcriptional regulat 52.8 42 0.0014 25.3 6.9 43 107-151 64-106 (162)
75 3eco_A MEPR; mutlidrug efflux 52.1 35 0.0012 25.0 6.2 45 108-154 46-90 (139)
76 2heo_A Z-DNA binding protein 1 51.8 14 0.00047 25.0 3.4 44 96-143 14-57 (67)
77 2k02_A Ferrous iron transport 50.6 12 0.00041 27.2 3.1 44 99-144 6-49 (87)
78 3bj6_A Transcriptional regulat 50.2 32 0.0011 25.6 5.7 42 108-151 53-94 (152)
79 3t5v_A Nuclear mRNA export pro 50.1 25 0.00084 31.4 5.7 61 72-132 177-247 (316)
80 2vn2_A DNAD, chromosome replic 49.9 37 0.0013 25.7 6.0 80 87-178 30-110 (128)
81 2jt1_A PEFI protein; solution 49.8 12 0.00042 26.4 3.0 34 107-142 22-55 (77)
82 2w25_A Probable transcriptiona 49.6 19 0.00066 27.5 4.4 42 105-148 17-61 (150)
83 3tgn_A ADC operon repressor AD 48.6 42 0.0014 24.8 6.1 43 110-154 52-94 (146)
84 2p4w_A Transcriptional regulat 48.3 1.1E+02 0.0038 25.0 13.5 38 108-147 27-64 (202)
85 2x4h_A Hypothetical protein SS 46.7 43 0.0015 24.8 5.9 55 86-144 10-64 (139)
86 3gp4_A Transcriptional regulat 46.3 63 0.0021 25.0 7.0 95 110-219 3-117 (142)
87 2nnn_A Probable transcriptiona 46.0 45 0.0015 24.2 5.9 44 108-153 51-94 (140)
88 3pqk_A Biofilm growth-associat 45.5 55 0.0019 23.0 6.1 39 108-148 35-73 (102)
89 2hr3_A Probable transcriptiona 45.3 56 0.0019 24.1 6.4 44 107-152 48-91 (147)
90 2pg4_A Uncharacterized protein 45.2 30 0.001 24.3 4.5 45 96-142 16-62 (95)
91 3cdh_A Transcriptional regulat 45.2 75 0.0026 23.7 7.2 44 106-151 54-97 (155)
92 3boq_A Transcriptional regulat 44.6 20 0.00069 27.1 3.8 46 105-152 58-103 (160)
93 2fa5_A Transcriptional regulat 44.4 28 0.00096 26.4 4.6 43 107-151 61-103 (162)
94 1u2w_A CADC repressor, cadmium 44.3 28 0.00097 25.9 4.5 38 107-146 54-91 (122)
95 1z05_A Transcriptional regulat 44.1 18 0.00062 32.9 4.0 71 71-143 13-85 (429)
96 1j5y_A Transcriptional regulat 44.0 44 0.0015 26.8 5.9 50 92-143 18-69 (187)
97 1tbx_A ORF F-93, hypothetical 43.7 73 0.0025 22.1 6.5 45 107-153 20-68 (99)
98 1r1u_A CZRA, repressor protein 42.6 38 0.0013 24.3 4.9 37 108-146 38-74 (106)
99 2nyx_A Probable transcriptiona 40.1 59 0.002 24.9 6.0 44 108-153 58-101 (168)
100 3u2r_A Regulatory protein MARR 39.6 1.2E+02 0.0042 22.9 7.9 49 107-157 60-108 (168)
101 1uly_A Hypothetical protein PH 37.4 1.6E+02 0.0055 23.7 12.4 35 108-144 32-66 (192)
102 1jgs_A Multiple antibiotic res 37.0 83 0.0028 22.8 6.1 44 108-153 47-90 (138)
103 1z91_A Organic hydroperoxide r 37.0 31 0.0011 25.5 3.7 41 108-150 53-93 (147)
104 2pex_A Transcriptional regulat 36.8 77 0.0026 23.5 6.0 43 107-151 59-101 (153)
105 3e6m_A MARR family transcripti 36.3 23 0.00079 27.1 2.9 42 108-151 66-107 (161)
106 3bdd_A Regulatory protein MARR 36.3 52 0.0018 23.9 4.9 42 108-151 44-85 (142)
107 3f6v_A Possible transcriptiona 35.7 85 0.0029 24.4 6.2 41 107-149 69-109 (151)
108 3fm5_A Transcriptional regulat 34.4 56 0.0019 24.3 4.9 49 104-154 49-97 (150)
109 3bro_A Transcriptional regulat 33.9 1.3E+02 0.0045 21.6 7.1 41 109-151 50-90 (141)
110 2p7v_B Sigma-70, RNA polymeras 32.7 47 0.0016 21.7 3.7 28 107-136 23-50 (68)
111 1y0u_A Arsenical resistance op 31.4 66 0.0023 22.4 4.5 35 108-144 42-76 (96)
112 1tc3_C Protein (TC3 transposas 30.9 39 0.0013 19.7 2.8 22 110-132 22-43 (51)
113 2a61_A Transcriptional regulat 30.7 1.5E+02 0.0052 21.4 10.9 46 107-154 45-90 (145)
114 1ku3_A Sigma factor SIGA; heli 30.7 53 0.0018 21.8 3.7 28 107-136 28-55 (73)
115 3ech_A MEXR, multidrug resista 30.4 39 0.0013 25.0 3.3 44 108-153 50-93 (142)
116 1rz4_A Eukaryotic translation 30.2 2.4E+02 0.0082 23.5 9.9 108 22-132 62-175 (226)
117 3nqo_A MARR-family transcripti 29.7 2E+02 0.0068 22.4 8.1 65 86-157 38-103 (189)
118 3c57_A Two component transcrip 29.2 1.1E+02 0.0038 21.5 5.5 27 108-136 41-67 (95)
119 1q1h_A TFE, transcription fact 28.9 42 0.0014 24.1 3.1 38 105-144 29-66 (110)
120 2jsc_A Transcriptional regulat 28.8 86 0.0029 22.9 4.9 38 108-147 33-70 (118)
121 2k6x_A Sigma-A, RNA polymerase 28.4 35 0.0012 23.4 2.4 39 100-139 14-56 (72)
122 1d7m_A Cortexillin I; coiled-c 28.1 1.2E+02 0.0041 22.3 5.3 39 188-226 30-68 (101)
123 2qvo_A Uncharacterized protein 27.9 1.1E+02 0.0039 21.1 5.3 48 106-155 27-74 (95)
124 3f3x_A Transcriptional regulat 27.9 1.6E+02 0.0056 21.4 6.5 44 111-156 52-95 (144)
125 2qlz_A Transcription factor PF 27.8 61 0.0021 27.4 4.3 45 106-155 175-219 (232)
126 3hug_A RNA polymerase sigma fa 27.7 50 0.0017 23.0 3.3 27 108-136 52-78 (92)
127 1tty_A Sigma-A, RNA polymerase 27.4 63 0.0022 22.3 3.8 29 106-136 35-63 (87)
128 1t3j_A Mitofusin 1; coiled coi 26.9 1.1E+02 0.0036 22.7 4.9 35 168-202 32-66 (96)
129 2bv6_A MGRA, HTH-type transcri 26.9 84 0.0029 22.9 4.6 43 107-151 49-91 (142)
130 3kor_A Possible Trp repressor; 26.8 88 0.003 24.0 4.7 37 98-139 66-102 (119)
131 1eij_A Hypothetical protein MT 26.0 28 0.00094 25.0 1.5 23 124-147 36-58 (80)
132 3t72_q RNA polymerase sigma fa 25.7 62 0.0021 23.6 3.6 28 107-136 37-64 (99)
133 1r8e_A Multidrug-efflux transp 25.4 2.9E+02 0.0098 22.8 8.3 100 108-219 4-115 (278)
134 1on2_A Transcriptional regulat 25.2 92 0.0031 23.0 4.6 53 88-144 3-55 (142)
135 2wte_A CSA3; antiviral protein 25.0 91 0.0031 26.4 5.0 45 107-155 164-208 (244)
136 2frh_A SARA, staphylococcal ac 24.7 78 0.0027 23.2 4.0 47 107-155 51-97 (127)
137 2qww_A Transcriptional regulat 24.7 57 0.002 24.3 3.3 42 108-151 54-97 (154)
138 2fh0_A Hypothetical 16.0 kDa p 24.2 29 0.00099 25.0 1.4 23 124-147 34-56 (81)
139 1r1t_A Transcriptional repress 24.0 1.7E+02 0.0058 21.6 5.9 37 108-146 58-94 (122)
140 3ulq_B Transcriptional regulat 23.7 88 0.003 22.1 4.0 40 84-132 27-66 (90)
141 2fxo_A Myosin heavy chain, car 22.0 2.6E+02 0.0089 21.1 7.5 58 167-224 67-124 (129)
142 2o8x_A Probable RNA polymerase 22.0 1.6E+02 0.0054 18.6 6.4 26 109-136 31-56 (70)
143 2lfw_A PHYR sigma-like domain; 21.8 65 0.0022 24.6 3.2 27 108-136 108-134 (157)
144 2bni_A General control protein 21.6 1.3E+02 0.0046 17.9 3.7 23 199-221 10-32 (34)
145 2l16_A SEC-independent protein 21.6 67 0.0023 22.8 2.8 32 161-192 20-51 (78)
146 3c3f_A Alpha/beta peptide with 21.3 1.4E+02 0.0047 17.9 3.7 23 199-221 10-32 (34)
147 2jpc_A SSRB; DNA binding prote 20.8 84 0.0029 19.7 3.1 23 109-132 13-35 (61)
148 1je8_A Nitrate/nitrite respons 20.1 1.3E+02 0.0044 20.5 4.2 26 108-135 35-60 (82)
No 1
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=100.00 E-value=3.6e-51 Score=344.30 Aligned_cols=168 Identities=79% Similarity=1.223 Sum_probs=158.7
Q ss_pred chhHHHHhHHHHHHHhccCccHHHHHHHHHHHhcCCCcccchhhhcCchhhhccCCCchHHHHHHHHHhcCChhhHhhhh
Q 025856 2 DIEQRQAELIDHFVKQASNQKGAALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKNNA 81 (247)
Q Consensus 2 ~~~~~~~~~l~~f~~lak~~~~~~a~~lI~~AL~~p~vf~F~eLL~lp~v~~L~~~~~~~~~~LL~iFa~Gt~~dy~~~~ 81 (247)
++|+++.+.||||+.+||++++++|+++|.+||.+|++|+|||||.+|+|++|++++++|+++||++|++|||.+|.+++
T Consensus 2 ~~~~~~~~~l~~f~~la~~~~~~~a~~li~~Al~~p~vf~F~eLL~~p~v~~L~~~~~~~~~~LL~iF~~G~~~~y~~~~ 81 (169)
T 3chm_A 2 DIEQKQAEIIDQLVKRASTCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAHGTWGDYKCNA 81 (169)
T ss_dssp --CCCHHHHHHHHHHHHTTSCGGGHHHHHHHHHHCTTCCCCHHHHTCHHHHTTTTSTTHHHHHHHHHHHHCCHHHHHHHG
T ss_pred chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCCeeehHHHhCChHHHHhcCCChhHHHHHHHHHhcCCHHHHHHhH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcchHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCC
Q 025856 82 GHLPQLVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRD 161 (247)
Q Consensus 82 ~~l~~L~~~~~~KLr~LtllsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~V~~~~~Rd 161 (247)
+.+|.|++.+.+|||+|||++||..+++|||++|+++|+|+|+++||+||||+||+.|||+|||||++++|+|+|++||+
T Consensus 82 ~~~p~L~~~~~~KlrlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~~~~R~ 161 (169)
T 3chm_A 82 TRLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGRD 161 (169)
T ss_dssp GGSCCCCHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEEECCTT
T ss_pred HhCcchHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEeecCCc
Confidence 89999999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred CCCCcHHH
Q 025856 162 LRPGQLGS 169 (247)
Q Consensus 162 l~~~q~~~ 169 (247)
|+++||++
T Consensus 162 l~~~qi~~ 169 (169)
T 3chm_A 162 LRPGQLGN 169 (169)
T ss_dssp CCC-----
T ss_pred cCHHhccC
Confidence 99999963
No 2
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-35 Score=275.24 Aligned_cols=171 Identities=13% Similarity=0.312 Sum_probs=118.8
Q ss_pred cHHHHHHHHHHHhcCCCcccchhhhcCchhhhccC-CCchHHHHHHHHHhcCChhhHhh----hhCCCCCcchH---HHH
Q 025856 22 KGAALGSVIVEATSQPSLFAFSEILAVPNIAEFEG-TENSKYLDMLRLFAHGTWSDYKN----NAGHLPQLVPD---QVL 93 (247)
Q Consensus 22 ~~~~a~~lI~~AL~~p~vf~F~eLL~lp~v~~L~~-~~~~~~~~LL~iFa~Gt~~dy~~----~~~~l~~L~~~---~~~ 93 (247)
+...|+.++..||.+|++|+||+|+.+|.+++|++ +++.|+++||++|++||+.+|.+ +.+.+|.+.+. ..+
T Consensus 210 ~~~~a~~l~~~all~~~i~~f~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~~~~~l~~ 289 (393)
T 4b4t_O 210 RQQLAYDLSISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQHESFLRQ 289 (393)
T ss_dssp HHHHHHHHHHHHHHCCSSCSTHHHHHSCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCChHHHhCChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhhhHHHHHH
Confidence 45679999999999999999999999999999975 46999999999999999999976 44566766644 478
Q ss_pred HHHHHHhhhccc--CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCCCCCCcHHHHH
Q 025856 94 KLKQLTVLTLAE--TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMI 171 (247)
Q Consensus 94 KLr~LtllsLa~--~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~V~~~~~Rdl~~~q~~~l~ 171 (247)
|+|.+++++|+. +++.|||++|+++|+|+ +++||+||| +||+.|+|+|+|||++++|+|+|++||+++++||..|.
T Consensus 290 kirll~l~~l~~~~~~~~i~f~~ia~~l~i~-~~evE~lli-~aI~~glI~GkIDQv~~~v~v~~~~pR~~~~~q~~~l~ 367 (393)
T 4b4t_O 290 KICLMTLIETVFVKNIRMLSFEDISKATHLP-KDNVEHLVM-RAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMK 367 (393)
T ss_dssp HHHHHHHHHHHCSSSCCCEEHHHHHHHHTCC-HHHHHHHHH-HHHHHSCSSSCEETTTTEECC-----------------
T ss_pred HHHHHHHHHHhccCCCCcCcHHHHHHHhCcC-HHHHHHHHH-HHHHcCCEEEEEcCCCCEEEEEeccCCCCCHHHHHHHH
Confidence 999999999884 57899999999999997 999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025856 172 QTLSNWLTTSDNLLISIQEKIKW 194 (247)
Q Consensus 172 ~~L~~W~~~~~~vl~~Ie~~i~~ 194 (247)
++|..|+++|++++..|+++.+.
T Consensus 368 ~~L~~W~~~v~~l~~~ve~~~~~ 390 (393)
T 4b4t_O 368 DRLVEWNDQVEKLGKKMEARGQS 390 (393)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999987653
No 3
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=99.41 E-value=1e-12 Score=123.15 Aligned_cols=159 Identities=11% Similarity=0.109 Sum_probs=111.4
Q ss_pred HHHHHHHHHHhcCCCcccchhhhcCchhhhccCCCchHHHHHHHHHhcCChhhHhhh----hCCCCC---cc---hHHHH
Q 025856 24 AALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKNN----AGHLPQ---LV---PDQVL 93 (247)
Q Consensus 24 ~~a~~lI~~AL~~p~vf~F~eLL~lp~v~~L~~~~~~~~~~LL~iFa~Gt~~dy~~~----~~~l~~---L~---~~~~~ 93 (247)
..+.-++..+|..-+.+.+++++..|......+++..|+.+|+..|.+|++..|... .+.+.. +. ....+
T Consensus 221 ~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~ 300 (394)
T 3txn_A 221 TSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYD 300 (394)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 456668888888888999999999887665645457899999999999999999762 232221 11 33467
Q ss_pred HHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCCCCCCcHHHHHHH
Q 025856 94 KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQT 173 (247)
Q Consensus 94 KLr~LtllsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~V~~~~~Rdl~~~q~~~l~~~ 173 (247)
++|...++.+..++++|+++.|++.++++ ++++|.+|+ ++|..|.|.|+|||++++|++....+|+ ...+...+.
T Consensus 301 ~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls-~~evE~~L~-~lI~dg~I~a~IDq~~giv~~~~~~~r~---~~y~~ale~ 375 (394)
T 3txn_A 301 TMLEQNLCRIIEPYSRVQVAHVAESIQLP-MPQVEKKLS-QMILDKKFSGILDQGEGVLIVFEETPVD---KTYERVLET 375 (394)
T ss_dssp HHHHHHHHHHHTTCSEEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSSCEEEETTTTEEEECCC----------------
T ss_pred HHHHHHHHHHhHhhceeeHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeeEEEcCCCCEEEECCCcchh---hHHHHHHHH
Confidence 89999999999999999999999999997 999999999 9999999999999999999998766665 445566789
Q ss_pred HHHHHHHHHHHHHH
Q 025856 174 LSNWLTTSDNLLIS 187 (247)
Q Consensus 174 L~~W~~~~~~vl~~ 187 (247)
+..|...++.++..
T Consensus 376 l~~ls~vVd~L~~~ 389 (394)
T 3txn_A 376 IQSMGKVVDTLYQK 389 (394)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988877653
No 4
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.98 E-value=1.1e-09 Score=103.42 Aligned_cols=162 Identities=14% Similarity=0.154 Sum_probs=99.0
Q ss_pred HHHHHHHHHHhcCCCcccchhhhcCchhhhccCCCchHHHHHHHHHhcCChhhHhh----hhCCCC--------Cc----
Q 025856 24 AALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKN----NAGHLP--------QL---- 87 (247)
Q Consensus 24 ~~a~~lI~~AL~~p~vf~F~eLL~lp~v~~L~~~~~~~~~~LL~iFa~Gt~~dy~~----~~~~l~--------~L---- 87 (247)
.+...+|...+.+|..-.++.++.-+.... ...+.+.+..|+.+|..+.+..|.. +...+. ..
T Consensus 259 ~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~-~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~ 337 (445)
T 4b4t_P 259 PVLSHIVYFLVLSPYGNLQNDLIHKIQNDN-NLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHH 337 (445)
T ss_dssp HHHHHHHHHHHHSSCSSTTHHHHHSHHHHS-SCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHH
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHhhcc-cccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHH
Confidence 355667778888888888888886543221 1123568899999999999887764 222111 01
Q ss_pred chHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCCCCCCcH
Q 025856 88 VPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQL 167 (247)
Q Consensus 88 ~~~~~~KLr~LtllsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~V~~~~~Rdl~~~q~ 167 (247)
-....+.++...|..++..++.|+++.|++.|+++ ++++|.++. ++|..|.|.|+|||++|+|++....+
T Consensus 338 ~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~-~~evE~~ls-~mI~~g~i~akIDq~~giV~F~~~~~-------- 407 (445)
T 4b4t_P 338 WEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLT-ESQTETYIS-DLVNQGIIYAKVNRPAKIVNFEKPKN-------- 407 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSC-HHHHHHHHH-HHHHHTSSCCEEETTTTEEEC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcC-HHHHHHHHH-HHHHCCCEEEEEcCCCCEEEECCCCC--------
Confidence 13345677778899999999999999999999998 999999999 99999999999999999887654322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025856 168 GSMIQTLSNWLTTSDNLLISIQEKIKWADSM 198 (247)
Q Consensus 168 ~~l~~~L~~W~~~~~~vl~~Ie~~i~~a~~~ 198 (247)
-.+.|..|..++++++..|+.-.+-.+++
T Consensus 408 --~~~~l~~W~~~i~~l~~~v~k~~~lI~kE 436 (445)
T 4b4t_P 408 --SSQLLNEWSHNVDELLEHIETIGHLITKE 436 (445)
T ss_dssp -------------------------------
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23578999999999999987655555543
No 5
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.81 E-value=1.8e-08 Score=94.51 Aligned_cols=135 Identities=13% Similarity=0.121 Sum_probs=97.5
Q ss_pred HHHHHHHHHhcCCCcccc-hhhhcCchhhhc-cCCC-chHHHHHHHHHhcCChhhHhhh-----hCC------CCCcchH
Q 025856 25 ALGSVIVEATSQPSLFAF-SEILAVPNIAEF-EGTE-NSKYLDMLRLFAHGTWSDYKNN-----AGH------LPQLVPD 90 (247)
Q Consensus 25 ~a~~lI~~AL~~p~vf~F-~eLL~lp~v~~L-~~~~-~~~~~~LL~iFa~Gt~~dy~~~-----~~~------l~~L~~~ 90 (247)
.+.-.+.-++..++.-.+ ..++.-|.+... ...| ..++.+++..|-.+.+..|... ... +.+-...
T Consensus 249 ~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h~~~ 328 (429)
T 4b4t_R 249 IATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRHADF 328 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTTHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHHHHHHHH
Confidence 344555555555544332 235566665543 3333 3567788888888888886431 111 2222355
Q ss_pred HHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCC
Q 025856 91 QVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRD 161 (247)
Q Consensus 91 ~~~KLr~LtllsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~V~~~~~Rd 161 (247)
..+.+|...++.++.++++|+++.+++.+|++ +.++|.++. +.|..|-|.|||||++|+|++....+|.
T Consensus 329 l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s-~~~~E~~L~-~lI~~g~l~akID~~~giv~~~~~d~~~ 397 (429)
T 4b4t_R 329 FVREMRRKVYAQLLESYKTLSLKSMASAFGVS-VAFLDNDLG-KFIPNKQLNCVIDRVNGIVETNRPDNKN 397 (429)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSC-HHHHHHHHH-HHHHHTSSCEEEETTTTEEEECC-----
T ss_pred HHHHHHHHHHHHHhHHhceeeHHHHHHHhCcC-HHHHHHHHH-HHHHcCCeEEEEcCCCCEEEECCCCchh
Confidence 68999999999999999999999999999998 999999999 9999999999999999999988776664
No 6
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=98.56 E-value=2.8e-08 Score=85.04 Aligned_cols=97 Identities=18% Similarity=0.236 Sum_probs=77.0
Q ss_pred hHHHHHHHHHhcCChhhHhhh----hCCCC-CcchHHHHHHHHHHhhhccc------CCcccChHHHHHHcCCC-----C
Q 025856 60 SKYLDMLRLFAHGTWSDYKNN----AGHLP-QLVPDQVLKLKQLTVLTLAE------TNKVLPYDELMEELDVT-----N 123 (247)
Q Consensus 60 ~~~~~LL~iFa~Gt~~dy~~~----~~~l~-~L~~~~~~KLr~LtllsLa~------~~k~Isy~~I~~~L~I~-----~ 123 (247)
..+.+|..++..||+..|.+. .+.+. .-.-..+.|+|.+.+..|.. ++..||++.|+.+|++. +
T Consensus 81 ~~y~~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~~~ 160 (203)
T 3t5x_A 81 MQFAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVD 160 (203)
T ss_dssp GGGHHHHHHHHHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTTCC
T ss_pred hHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCC
Confidence 368899999999999999862 22111 11112367888888877765 68899999999999652 4
Q ss_pred hHHHHHHHHHHhHhcCccEEEecCCCCEEEEEee
Q 025856 124 VRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (247)
Q Consensus 124 ~~evE~llI~~aI~~glI~GkIDQ~~~~v~V~~~ 157 (247)
.+|||.+|. .+|+.|.|+|+||+.++++.++..
T Consensus 161 ~~evE~ila-~lI~~G~Ikg~I~~~~~~lVlsk~ 193 (203)
T 3t5x_A 161 IDEVQCILA-NLIYMGHVKGYISHQHQKLVVSKQ 193 (203)
T ss_dssp HHHHHHHHH-HHHHHTSSCEEEETTTTEEEECSS
T ss_pred HHHHHHHHH-HHHHcCceEEEEcccccEEEECCC
Confidence 899999999 899999999999999999988754
No 7
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.54 E-value=7e-08 Score=86.55 Aligned_cols=122 Identities=13% Similarity=0.117 Sum_probs=79.5
Q ss_pred chHHHHHHHHHhcCChhhHhhhhC----CCCC------cchHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHH
Q 025856 59 NSKYLDMLRLFAHGTWSDYKNNAG----HLPQ------LVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELE 128 (247)
Q Consensus 59 ~~~~~~LL~iFa~Gt~~dy~~~~~----~l~~------L~~~~~~KLr~LtllsLa~~~k~Isy~~I~~~L~I~~~~evE 128 (247)
..++..++..|..+++..|..... .+.. ......+.++...+..++..++.|+++.|++.|+++ ++++|
T Consensus 296 ~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~-~~~~E 374 (434)
T 4b4t_Q 296 IDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLD-TQQVE 374 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCC-HHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcC-HHHHH
Confidence 567889999999999999876321 1111 123345678888899999999999999999999997 99999
Q ss_pred HHHHHHhHhcCccEEEecCCCCEEEEEeecCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025856 129 DFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNWLTTSDNLLISIQEKI 192 (247)
Q Consensus 129 ~llI~~aI~~glI~GkIDQ~~~~v~V~~~~~Rdl~~~q~~~l~~~L~~W~~~~~~vl~~Ie~~i 192 (247)
.+|. ++|..|.|.|+|||.+++|.+.....++ .....|.+.++++...|+...
T Consensus 375 ~~l~-~lI~~~~i~a~id~~~g~v~~~~~~~~~----------~~~~~~l~~~~~l~~~vd~L~ 427 (434)
T 4b4t_Q 375 GKLS-QMILDKIFYGVLDQGNGWLYVYETPNQD----------ATYDSALELVGQLNKVVDQLF 427 (434)
T ss_dssp HHHH-HHHHHTSSCCEEETTTTEEECC-------------------------------------
T ss_pred HHHH-HHHhCCCcceecccccCeEeeCCCcchh----------HHHHHHHHHHHHHHHHHHHHH
Confidence 9999 9999999999999999999986554443 234555555555555555433
No 8
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=98.36 E-value=9.4e-07 Score=65.61 Aligned_cols=63 Identities=14% Similarity=0.257 Sum_probs=54.5
Q ss_pred HHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeec
Q 025856 94 KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAA 158 (247)
Q Consensus 94 KLr~LtllsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~V~~~~ 158 (247)
++..-.|..+++.++.|+++.|++.++++ .+++|.++. ++|..|-|.|+|||++++|.+....
T Consensus 15 ~v~E~nl~~is~~Y~~Isl~~La~ll~ls-~~~vE~~ls-~mI~~~~l~akIDq~~g~V~f~~~e 77 (84)
T 1ufm_A 15 AVIEHNLLSASKLYNNITFEELGALLEIP-AAKAEKIAS-QMITEGRMNGFIDQIDGIVHFETRE 77 (84)
T ss_dssp HHHHHHHHHHHHSCSEEEHHHHHHHTTSC-HHHHHHHHH-HHHHTTSSCEEEETTTTEEEECCSS
T ss_pred HHHHHHHHHHHHhcCeeeHHHHHHHHCcC-HHHHHHHHH-HHHhCCcEEEEEeCCCCEEEeCCcc
Confidence 34444455677899999999999999998 999999999 9999999999999999999875433
No 9
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.05 E-value=2.1e-06 Score=82.93 Aligned_cols=94 Identities=12% Similarity=0.239 Sum_probs=71.8
Q ss_pred hHHHHHHHHHhcCChhhHhhh----hCCC-CCcchHHHHHHHHH----HhhhcccCCcccChHHHHHHcCCCChHHHHHH
Q 025856 60 SKYLDMLRLFAHGTWSDYKNN----AGHL-PQLVPDQVLKLKQL----TVLTLAETNKVLPYDELMEELDVTNVRELEDF 130 (247)
Q Consensus 60 ~~~~~LL~iFa~Gt~~dy~~~----~~~l-~~L~~~~~~KLr~L----tllsLa~~~k~Isy~~I~~~L~I~~~~evE~l 130 (247)
.+|+.|..+|..|++..|.+. ...+ ..=+-..+.++|+. .|..+...+..||+++|+..|++++.+++|.+
T Consensus 343 ~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~i 422 (523)
T 4b4t_S 343 LPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYM 422 (523)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCTHHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHH
Confidence 579999999999999999862 1111 11111223444443 34556667899999999999999878899999
Q ss_pred HHHHhHhcCccEEEecCCCCEEEE
Q 025856 131 LINECMYTGIVRGKLDQLRRCFEV 154 (247)
Q Consensus 131 lI~~aI~~glI~GkIDQ~~~~v~V 154 (247)
|- ++|+.|.|+|+|||.++.|..
T Consensus 423 VA-kmI~dG~I~A~Idh~~g~v~s 445 (523)
T 4b4t_S 423 VS-RAIRDGVIEAKINHEDGFIET 445 (523)
T ss_dssp HH-HHHHHTSSCCEECTTTCCEEC
T ss_pred HH-HHHHcCCceEEEecCCCEEEe
Confidence 99 999999999999999997653
No 10
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=97.60 E-value=2.6e-05 Score=74.19 Aligned_cols=95 Identities=17% Similarity=0.180 Sum_probs=72.3
Q ss_pred HHHHHHHHhcCChhhHhhh----hCCC-CCcc-hHHHHHHHHHHhhhcc----------cCCcccChHHHHHHcCC----
Q 025856 62 YLDMLRLFAHGTWSDYKNN----AGHL-PQLV-PDQVLKLKQLTVLTLA----------ETNKVLPYDELMEELDV---- 121 (247)
Q Consensus 62 ~~~LL~iFa~Gt~~dy~~~----~~~l-~~L~-~~~~~KLr~LtllsLa----------~~~k~Isy~~I~~~L~I---- 121 (247)
+..|..++..||+..|.+. ...+ ..-. --.+.|+|++++-.|. .+...||++.|+.+|++
T Consensus 299 y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL~~~~~~ 378 (455)
T 3t5v_B 299 WSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQLSIGP 378 (455)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHhhccCc
Confidence 7889999999999999862 2211 1112 3345677776543332 23379999999999984
Q ss_pred ----------------CChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEee
Q 025856 122 ----------------TNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (247)
Q Consensus 122 ----------------~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~V~~~ 157 (247)
.+.+|||-++. .+|+.|+|+|+||+.++++.+...
T Consensus 379 ~~~~~~~~~~~~~~~~~~~devEcIlA-~LI~~G~IkGyIsh~~~~lVlSK~ 429 (455)
T 3t5v_B 379 TFEDPGAQEITIYNGIHSPKNVENVLV-TLINLGLLRANCFPQLQLCVVKKT 429 (455)
T ss_dssp CTTSTTCCCCCTTTSSCCSSCHHHHHH-HHHHHTSCCEEEETTTTEEEECCC
T ss_pred cccccccccccccccCCCHHHHHHHHH-HHHHcCCeEEEEecCCCEEEECCC
Confidence 24889999999 899999999999999999998765
No 11
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=93.81 E-value=0.089 Score=45.12 Aligned_cols=100 Identities=14% Similarity=0.156 Sum_probs=69.7
Q ss_pred hcCCCcccchhhh-cCchhhhccCCC-chHHHHHHHHHhcCChhhHhhhhCCCCC-----cchHHHHHHHHHHhhhcccC
Q 025856 34 TSQPSLFAFSEIL-AVPNIAEFEGTE-NSKYLDMLRLFAHGTWSDYKNNAGHLPQ-----LVPDQVLKLKQLTVLTLAET 106 (247)
Q Consensus 34 L~~p~vf~F~eLL-~lp~v~~L~~~~-~~~~~~LL~iFa~Gt~~dy~~~~~~l~~-----L~~~~~~KLr~LtllsLa~~ 106 (247)
|.-.++-.|.-.+ .+|.-..+++++ -...+++-+.+..|+|..|-......|. +.+-...++|.-++-+++..
T Consensus 108 L~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p~~~~~~~~~~l~~~vR~~~l~~i~ka 187 (229)
T 4b0z_A 108 LSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIVMSMVRNEIATCAEKV 187 (229)
T ss_dssp HHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444454554333 233222233333 2456789999999999998764444443 22445788998888888888
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHH
Q 025856 107 NKVLPYDELMEELDVTNVRELEDFLINE 134 (247)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~ 134 (247)
+..||.+++++.|+++|.++++.++- +
T Consensus 188 Y~~i~l~~~~~~L~f~s~~e~~~f~~-~ 214 (229)
T 4b0z_A 188 YSEIPLSNATSLLYLENTKETEKLAE-E 214 (229)
T ss_dssp CSEEEHHHHHHHTTCSSHHHHHHHHH-H
T ss_pred cCCCCHHHHHHHhCCCCHHHHHHHHH-H
Confidence 89999999999999999999999988 6
No 12
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=92.71 E-value=0.13 Score=36.66 Aligned_cols=54 Identities=11% Similarity=0.280 Sum_probs=46.9
Q ss_pred hhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 025856 100 VLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (247)
Q Consensus 100 llsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~V~ 155 (247)
++.....+|+++.++||.++++. ..++-+-|- +....|.|.|-||...+-++|+
T Consensus 12 Fi~yIk~~Kvv~LedLA~~F~l~-t~~~i~RI~-~Le~~g~ltGViDDRGKfIyIs 65 (72)
T 1wi9_A 12 FINYIKKSKVVLLEDLAFQMGLR-TQDAINRIQ-DLLTEGTLTGVIDDRGKFIYIT 65 (72)
T ss_dssp HHHHHHHCSEECHHHHHHHHCSC-HHHHHHHHH-HHHHHSSSCEEECTTCCEEECC
T ss_pred HHHHHHHcCeeeHHHHHHHhCCC-hHHHHHHHH-HHHHCCCeEEEEeCCCCEEEec
Confidence 45556678999999999999998 777777777 8888999999999999999886
No 13
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=87.43 E-value=2.7 Score=31.38 Aligned_cols=80 Identities=11% Similarity=0.218 Sum_probs=52.2
Q ss_pred HHHHHHhhhcccCCcccChHHHHHHc-CCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCCCCCCcHHHHHH
Q 025856 94 KLKQLTVLTLAETNKVLPYDELMEEL-DVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQ 172 (247)
Q Consensus 94 KLr~LtllsLa~~~k~Isy~~I~~~L-~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~V~~~~~Rdl~~~q~~~l~~ 172 (247)
|-|.+.|..|......++|.+|++.+ +|+ ..-|=.-+= ..-..|+|.-+.+ .++.+--...|+. +-....
T Consensus 27 ~wrl~IL~~L~~g~~~~~~~eL~~~l~gis-~~~ls~~L~-~Le~~GlV~r~~~--r~~~y~LT~~G~~-----l~~~l~ 97 (111)
T 3df8_A 27 KYTMLIISVLGNGSTRQNFNDIRSSIPGIS-STILSRRIK-DLIDSGLVERRSG--QITTYALTEKGMN-----VRNSLM 97 (111)
T ss_dssp TTHHHHHHHHTSSSSCBCHHHHHHTSTTCC-HHHHHHHHH-HHHHTTSEEEEES--SSEEEEECHHHHH-----HHHHHH
T ss_pred ccHHHHHHHHhcCCCCCCHHHHHHHccCCC-HHHHHHHHH-HHHHCCCEEEeec--CcEEEEECccHHH-----HHHHHH
Confidence 44554455555444456799999999 897 777776666 7788999999888 2222211223332 445677
Q ss_pred HHHHHHHHHH
Q 025856 173 TLSNWLTTSD 182 (247)
Q Consensus 173 ~L~~W~~~~~ 182 (247)
.+..|....+
T Consensus 98 ~l~~w~~~~~ 107 (111)
T 3df8_A 98 PLLQYISVLD 107 (111)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 7888887544
No 14
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=87.04 E-value=4.9 Score=29.48 Aligned_cols=70 Identities=14% Similarity=0.090 Sum_probs=48.9
Q ss_pred CcccChHHHHHHc-CCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCCCCCCcHHHHHHHHHHHHHHH
Q 025856 107 NKVLPYDELMEEL-DVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNWLTTS 181 (247)
Q Consensus 107 ~k~Isy~~I~~~L-~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~V~~~~~Rdl~~~q~~~l~~~L~~W~~~~ 181 (247)
....++.+|++.+ +++ ...|=..|= .....|+|..+-+..++....-+..+. + .++-.....+..|....
T Consensus 25 ~~~~~~~eLa~~l~~is-~~tls~~L~-~Le~~GlI~r~~~~~d~r~~~y~LT~~--G-~~l~~~~~~l~~w~~~~ 95 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNIT-QKMLTQQLR-ELEADGVINRIVYNQVPPKVEYELSEY--G-RSLEGILDMLXAWGANH 95 (107)
T ss_dssp TCCBCHHHHHHHCTTSC-HHHHHHHHH-HHHHTTSEEEEEECSSSCEEEEEECTT--G-GGGHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhcCCC-HHHHHHHHH-HHHHCCCEEEeecCCCCCeEEEEECcc--H-HHHHHHHHHHHHHHHHh
Confidence 3578999999999 997 777777666 788899999998876654433333332 1 22445567778887543
No 15
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=84.01 E-value=2.8 Score=30.04 Aligned_cols=58 Identities=14% Similarity=0.183 Sum_probs=41.4
Q ss_pred HHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 025856 94 KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (247)
Q Consensus 94 KLr~LtllsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~V 154 (247)
..+.|.++.-..+++.+++.+|++.|+++ ...|...|- +....|+|.-. +...+.-.|
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvs-r~tV~~~L~-~Le~~G~I~~~-g~~~~~W~i 69 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTP-KKEINRVLY-SLAKKGKLQKE-AGTPPLWKI 69 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE-SSSSCEEEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEec-CCCCCeeEE
Confidence 33445555533456799999999999998 899999988 88889998643 344444444
No 16
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=83.18 E-value=0.94 Score=34.72 Aligned_cols=71 Identities=15% Similarity=0.320 Sum_probs=43.7
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE---ecCCCCEEEEEeecCCCCCCCcHHHHHHHHHHHH
Q 025856 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK---LDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNWL 178 (247)
Q Consensus 106 ~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~Gk---IDQ~~~~v~V~~~~~Rdl~~~q~~~l~~~L~~W~ 178 (247)
.+..+|+.+|++.++++ ...+=..+= .....|+|.+. +|...--..++....-.+.+.....+.+.|..|-
T Consensus 15 ~~~~~~~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~l~~~~ 88 (141)
T 1i1g_A 15 KDARTPFTEIAKKLGIS-ETAVRKRVK-ALEEKGIIEGYTIKINPKKLGYSLVTITGVDTKPEKLFEVAEKLKEYD 88 (141)
T ss_dssp HCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHHTSSCCCCCCCCSGGGTCCEEEEEEEEECGGGHHHHHHHHHHST
T ss_pred HcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEeccccccChHHhCccEEEEEEEEECchhHHHHHHHHhcCC
Confidence 34568999999999997 777766666 77788999765 3432211111111000123456777777777774
No 17
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=82.43 E-value=2.5 Score=32.11 Aligned_cols=81 Identities=11% Similarity=0.114 Sum_probs=55.9
Q ss_pred hcccCCcc-cChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCC--CCEEEEEeecCCCCCCCc-HHHHHHHHHHH
Q 025856 102 TLAETNKV-LPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQL--RRCFEVQFAAGRDLRPGQ-LGSMIQTLSNW 177 (247)
Q Consensus 102 sLa~~~k~-Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~--~~~v~V~~~~~Rdl~~~q-~~~l~~~L~~W 177 (247)
.|...... ++-.+|++.++++ ...|-..|= .....|+|...-+.. .+..++-.+.+ +.+ .+.+...+..|
T Consensus 34 ~L~~~~~~~~t~~eLa~~l~~s-~sTV~r~L~-~L~~~GlV~r~~~~~d~~~~~~~y~~~~----~~~~~~~i~~~~~~~ 107 (123)
T 3r0a_A 34 SFLNEPDRWIDTDALSKSLKLD-VSTVQRSVK-KLHEKEILQRSQQNLDGGGYVYIYKIYS----KNQIRNIIQKIVQSW 107 (123)
T ss_dssp HHHHSTTCCEEHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEEEECTTSCEEEEEEECC----HHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEeeCCccCCCcceEEEecCC----HHHHHHHHHHHHHHH
Confidence 34445555 9999999999997 788887766 788899998765443 23333333322 233 45678899999
Q ss_pred HHHHHHHHHHH
Q 025856 178 LTTSDNLLISI 188 (247)
Q Consensus 178 ~~~~~~vl~~I 188 (247)
.+.+...++.+
T Consensus 108 ~~~~~~~l~~~ 118 (123)
T 3r0a_A 108 ADRLGQELKEW 118 (123)
T ss_dssp HHHHHHTTTTT
T ss_pred HHHHHHHHHHH
Confidence 99888766544
No 18
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=80.79 E-value=3.7 Score=28.93 Aligned_cols=48 Identities=17% Similarity=0.201 Sum_probs=37.8
Q ss_pred HHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEe
Q 025856 96 KQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKL 145 (247)
Q Consensus 96 r~LtllsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkI 145 (247)
+.|.++.-...+..+++.+||+.|+++ ...|...|= .....|+|.+.-
T Consensus 18 ~IL~~L~~~~~~~~~t~~eLA~~Lgvs-~~tV~~~L~-~L~~~G~I~~~g 65 (77)
T 1qgp_A 18 RILKFLEELGEGKATTAHDLSGKLGTP-KKEINRVLY-SLAKKGKLQKEA 65 (77)
T ss_dssp HHHHHHHHHCSSSCEEHHHHHHHHCCC-HHHHHHHHH-HHHHHTSEEEEC
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEecC
Confidence 344444444446689999999999998 899999877 888999998864
No 19
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=79.85 E-value=16 Score=28.33 Aligned_cols=78 Identities=19% Similarity=0.247 Sum_probs=53.4
Q ss_pred HHHHHhhhcccCCcccChHHHHHHc-CCCChHHHHHHHHHHhHhcCccEEEecCCCCE-EEEEe-ecCCCCCCCcHHHHH
Q 025856 95 LKQLTVLTLAETNKVLPYDELMEEL-DVTNVRELEDFLINECMYTGIVRGKLDQLRRC-FEVQF-AAGRDLRPGQLGSMI 171 (247)
Q Consensus 95 Lr~LtllsLa~~~k~Isy~~I~~~L-~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~-v~V~~-~~~Rdl~~~q~~~l~ 171 (247)
-+.+.|..|. .+..+|.+|++.+ +|+ ...|=..|= +.-..|+|.=+.+..... +.+.- -.||. +....
T Consensus 27 W~l~IL~~L~--~g~~rf~eL~~~l~gIs-~~~Ls~~L~-~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~-----l~~~l 97 (131)
T 4a5n_A 27 WKGILFYHMI--DGKKRFNEFRRICPSIT-QRMLTLQLR-ELEADGIVHREVYHQVPPKVEYSLTEFGRT-----LEPIV 97 (131)
T ss_dssp SHHHHHHHHT--TSCBCHHHHHHHCTTSC-HHHHHHHHH-HHHHTTSEEEEEECSSSCEEEEEECTTGGG-----GHHHH
T ss_pred CHHHHHHHHh--cCCcCHHHHHHHhcccC-HHHHHHHHH-HHHHCCCEEEEecCCCCCeEEEEECHhHHH-----HHHHH
Confidence 3444444554 4679999999999 997 777777766 788899999887765443 33322 23444 45567
Q ss_pred HHHHHHHHHH
Q 025856 172 QTLSNWLTTS 181 (247)
Q Consensus 172 ~~L~~W~~~~ 181 (247)
..|..|...-
T Consensus 98 ~~l~~W~~~~ 107 (131)
T 4a5n_A 98 LQMKEWGESN 107 (131)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7888997543
No 20
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.02 E-value=4.2 Score=35.60 Aligned_cols=96 Identities=15% Similarity=0.155 Sum_probs=69.3
Q ss_pred CCcccch-hhhcCchh-hhccCCCc-hHHHHHHHHHhcCChhhHhhh--hCCCCC-----cchHHHHHHHHHHhhhcccC
Q 025856 37 PSLFAFS-EILAVPNI-AEFEGTEN-SKYLDMLRLFAHGTWSDYKNN--AGHLPQ-----LVPDQVLKLKQLTVLTLAET 106 (247)
Q Consensus 37 p~vf~F~-eLL~lp~v-~~L~~~~~-~~~~~LL~iFa~Gt~~dy~~~--~~~l~~-----L~~~~~~KLr~LtllsLa~~ 106 (247)
.++-.|. +|-.+|.. .+++++++ ...+++-+.+..|+|..|-.. .+..|. +.+-...++|.-.+-+++..
T Consensus 117 n~~~efh~~Le~L~~~~~~~~~d~~Ik~al~le~al~eGnY~kff~l~~~~~~p~~~~~~f~d~l~~~iR~~a~~~i~ka 196 (274)
T 4b4t_T 117 NNTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFTDILKSAIRDEIAKNTELS 196 (274)
T ss_dssp HCSTHHHHHHHSSSCSSSTTTCCHHHHHHHHHHHHHHHTCSHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcchhhHhHhcChHHHHHHHHHHHHHcCCHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444 44455542 34555442 456788899999999998652 233343 33455789999888899988
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHH
Q 025856 107 NKVLPYDELMEELDVTNVRELEDFLI 132 (247)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI 132 (247)
++.||.+.+++.|+.+|..++.+|+-
T Consensus 197 Y~~i~l~~~~~~L~F~s~~e~~~F~~ 222 (274)
T 4b4t_T 197 YDFLPLSNIKALLFFNNEKETEKFAL 222 (274)
T ss_dssp CSSCCHHHHHHHHTCCSHHHHHHHHH
T ss_pred HhhcCHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999999999999977
No 21
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=75.94 E-value=3.6 Score=31.94 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=36.5
Q ss_pred hhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE---EecCC
Q 025856 100 VLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG---KLDQL 148 (247)
Q Consensus 100 llsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~G---kIDQ~ 148 (247)
|+.+...+..+|+.+|++.++++ ...|-..+= .....|+|.+ .+|..
T Consensus 13 il~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~~~~ 62 (152)
T 2cg4_A 13 ILEALMGNARTAYAELAKQFGVS-PETIHVRVE-KMKQAGIITGARIDVSPK 62 (152)
T ss_dssp HHHHHHHCTTSCHHHHHHHHTSC-HHHHHHHHH-HHHHHTSEEEEEEEECTT
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHcCCcceEEEecCHH
Confidence 34333445679999999999997 888887777 8888999986 56765
No 22
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=75.74 E-value=15 Score=25.79 Aligned_cols=73 Identities=15% Similarity=0.190 Sum_probs=46.4
Q ss_pred cccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCC---EEEEEeecCCCCCCCcHHHHHHHHHHHHH
Q 025856 103 LAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRR---CFEVQFAAGRDLRPGQLGSMIQTLSNWLT 179 (247)
Q Consensus 103 La~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~---~v~V~~~~~Rdl~~~q~~~l~~~L~~W~~ 179 (247)
+...+..++..+|++.++++ ...|-..+= .....|+|...-+...+ .... +... ++-+..+...+..|.+
T Consensus 30 l~~~~~~~t~~ela~~l~is-~~tv~~~l~-~L~~~g~v~~~~~~~~~~gr~~~~-~~l~----~~~~~~~~~~~~~~~~ 102 (109)
T 2d1h_A 30 MVEIEKPITSEELADIFKLS-KTTVENSLK-KLIELGLVVRTKTEGKKIGRPKYY-YSIS----SNILEKIRNDLLNCAK 102 (109)
T ss_dssp HHHHCSCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEC-------CCEE-EEEC----TTHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEeeccccCCCCCCCee-eecC----HHHHHHHHHHHHHHHH
Confidence 33335679999999999997 788887766 78889999876654432 1211 2111 2445666677777766
Q ss_pred HHH
Q 025856 180 TSD 182 (247)
Q Consensus 180 ~~~ 182 (247)
.+.
T Consensus 103 ~~~ 105 (109)
T 2d1h_A 103 RME 105 (109)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 23
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=75.48 E-value=17 Score=26.71 Aligned_cols=68 Identities=24% Similarity=0.135 Sum_probs=45.6
Q ss_pred cccChHHHHHHc-CCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCCCCCCcHHHHHHHHHHHHHH
Q 025856 108 KVLPYDELMEEL-DVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNWLTT 180 (247)
Q Consensus 108 k~Isy~~I~~~L-~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~V~~~~~Rdl~~~q~~~l~~~L~~W~~~ 180 (247)
..+++.+|++.+ +++ ...|=..|= .....|+|...-|..++....-...+.- .++-.....+..|...
T Consensus 34 ~~~~~~eLa~~l~~is-~~tvs~~L~-~Le~~GlI~r~~~~~d~r~~~~~LT~~G---~~~~~~~~~l~~w~~~ 102 (112)
T 1z7u_A 34 GTKRNGELMRALDGIT-QRVLTDRLR-EMEKDGLVHRESFNELPPRVEYTLTPEG---YALYDALSSLCHWGET 102 (112)
T ss_dssp SCBCHHHHHHHSTTCC-HHHHHHHHH-HHHHHTSEEEEEECCSSCEEEEEECHHH---HHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCC-HHHHHHHHH-HHHHCCCEEEeecCCCCCeEEEEECHhH---HHHHHHHHHHHHHHHH
Confidence 468999999999 997 788877766 8888999999988765544333322210 1233334566667654
No 24
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=75.22 E-value=12 Score=26.17 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=31.6
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecC
Q 025856 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (247)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ 147 (247)
...+++.+|++.++++ ...|=..+= .....|+|...-+.
T Consensus 28 ~~~~~~~ela~~l~is-~~tvs~~l~-~L~~~gli~~~~~~ 66 (100)
T 1ub9_A 28 RRKAPFSQIQKVLDLT-PGNLDSHIR-VLERNGLVKTYKVI 66 (100)
T ss_dssp HSEEEHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEEEEC
T ss_pred cCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEecC
Confidence 3579999999999997 778877666 77889999976643
No 25
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=74.73 E-value=3.1 Score=32.77 Aligned_cols=46 Identities=26% Similarity=0.193 Sum_probs=35.1
Q ss_pred hhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE---EecCC
Q 025856 101 LTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG---KLDQL 148 (247)
Q Consensus 101 lsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~G---kIDQ~ 148 (247)
+.+...+..+|+.+|++.++++ ...|-..+- .....|+|.+ .+|..
T Consensus 16 l~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~d~~ 64 (162)
T 2p5v_A 16 LQVLQENGRLTNVELSERVALS-PSPCLRRLK-QLEDAGIVRQYAALLSPE 64 (162)
T ss_dssp HHHHHHCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEEEEECTG
T ss_pred HHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEeeecccCChH
Confidence 3333444569999999999997 888888777 8889999985 45544
No 26
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=74.56 E-value=3.1 Score=32.13 Aligned_cols=47 Identities=15% Similarity=0.230 Sum_probs=36.0
Q ss_pred hhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE---ecCC
Q 025856 100 VLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK---LDQL 148 (247)
Q Consensus 100 llsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~Gk---IDQ~ 148 (247)
|+.+...+..+|+.+|++.++++ ...|-..+= .....|+|++. +|..
T Consensus 10 il~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~d~~ 59 (144)
T 2cfx_A 10 IIEELKKDSRLSMRELGRKIKLS-PPSVTERVR-QLESFGIIKQYTLEVDQK 59 (144)
T ss_dssp HHHHHHHCSCCCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEecccChh
Confidence 33333445679999999999997 888888777 88889999864 6654
No 27
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=74.50 E-value=3.3 Score=32.11 Aligned_cols=47 Identities=23% Similarity=0.272 Sum_probs=35.7
Q ss_pred hhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE---ecCC
Q 025856 100 VLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK---LDQL 148 (247)
Q Consensus 100 llsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~Gk---IDQ~ 148 (247)
|+.+...+..+|+.+|++.++++ ...+-..+- .....|+|.+. +|..
T Consensus 14 il~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~~~~ 63 (151)
T 2dbb_A 14 LVKILSENSRLTYRELADILNTT-RQRIARRID-KLKKLGIIRKFTIIPDID 63 (151)
T ss_dssp HHHHHHHCTTCCHHHHHHHTTSC-HHHHHHHHH-HHHHHTSEEEEEEEECTG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEEecCChH
Confidence 33333455779999999999997 888877777 88889999753 5654
No 28
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=74.21 E-value=14 Score=28.29 Aligned_cols=79 Identities=13% Similarity=0.162 Sum_probs=50.1
Q ss_pred HHHHHHhhhcccCCcccChHHHHHHc-CCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCCCCCCcHHHHHH
Q 025856 94 KLKQLTVLTLAETNKVLPYDELMEEL-DVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQ 172 (247)
Q Consensus 94 KLr~LtllsLa~~~k~Isy~~I~~~L-~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~V~~~~~Rdl~~~q~~~l~~ 172 (247)
+.+.+.|..|. ...++|.+|++.+ +|+ ..-|=..|= .....|+|.-+-|...+....-...+.- .++-....
T Consensus 35 ~w~l~IL~~L~--~g~~~~~eLa~~l~gis-~~tls~~L~-~Le~~GlV~r~~~~~d~r~~~y~LT~~G---~~l~~~l~ 107 (131)
T 1yyv_A 35 RWGVLILVALR--DGTHRFSDLRRXMGGVS-EXMLAQSLQ-ALEQDGFLNRVSYPVVPPHVEYSLTPLG---EQVSDXVA 107 (131)
T ss_dssp HHHHHHHHHGG--GCCEEHHHHHHHSTTCC-HHHHHHHHH-HHHHHTCEEEEEECSSSCEEEEEECHHH---HHHHHHHH
T ss_pred CcHHHHHHHHH--cCCCCHHHHHHHhccCC-HHHHHHHHH-HHHHCCcEEEEecCCCCCeEEEEECccH---HHHHHHHH
Confidence 34433444454 4578999999999 697 777777766 7888999999888765443333332211 12334455
Q ss_pred HHHHHHH
Q 025856 173 TLSNWLT 179 (247)
Q Consensus 173 ~L~~W~~ 179 (247)
.+..|..
T Consensus 108 ~l~~w~~ 114 (131)
T 1yyv_A 108 ALADWIE 114 (131)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6667764
No 29
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=73.95 E-value=13 Score=27.05 Aligned_cols=66 Identities=15% Similarity=0.142 Sum_probs=46.0
Q ss_pred CcccChHHHHHHcC-CCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEee--cCCCCCCCcHHHHHHHHHHHHH
Q 025856 107 NKVLPYDELMEELD-VTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA--AGRDLRPGQLGSMIQTLSNWLT 179 (247)
Q Consensus 107 ~k~Isy~~I~~~L~-I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~V~~~--~~Rdl~~~q~~~l~~~L~~W~~ 179 (247)
...++|.+|++.++ ++ ...|=..|= .....|+|..+-|..++....-.. .||. +-.....+..|..
T Consensus 36 ~~~~~~~eL~~~l~gis-~~~ls~~L~-~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~-----l~~~l~~l~~w~~ 104 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGIS-EKMLIDELK-FLCGKGLIKKKQYPEVPPRVEYSLTPLGEK-----VLPIIDEIAKFGM 104 (107)
T ss_dssp TSCEEHHHHHHHSTTCC-HHHHHHHHH-HHHHTTSEEEEEECSSSCEEEEEECHHHHT-----THHHHHHHHHHHH
T ss_pred hCCcCHHHHHHHcccCC-HHHHHHHHH-HHHHCCCEEEeecCCCCCeeEEEECccHHH-----HHHHHHHHHHHHH
Confidence 46789999999995 97 777777766 788899999988876544333332 2333 2344567777864
No 30
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=73.88 E-value=4.9 Score=31.41 Aligned_cols=57 Identities=16% Similarity=0.240 Sum_probs=41.1
Q ss_pred HHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 025856 95 LKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (247)
Q Consensus 95 Lr~LtllsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~V 154 (247)
+|.|..+.....++.++-++|++.+++| ..-|+.++- ..-.+|+|..+ -..++-+..
T Consensus 14 l~~L~~La~~~~~~~~s~~~IA~~~~i~-~~~l~kil~-~L~~aGlv~s~-rG~~GGy~L 70 (143)
T 3t8r_A 14 LTLMISLAKKEGQGCISLKSIAEENNLS-DLYLEQLVG-PLRNAGLIRSV-RGAKGGYQL 70 (143)
T ss_dssp HHHHHHHHTTTTSCCEEHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEC-SSSSSEEEE
T ss_pred HHHHHHHHhCCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCEEEec-CCCCCCeee
Confidence 4444444433345679999999999998 999999988 88999999864 334454443
No 31
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=73.86 E-value=15 Score=27.25 Aligned_cols=43 Identities=16% Similarity=0.017 Sum_probs=35.2
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025856 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (247)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~ 151 (247)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 48 ~~~~~~~ela~~l~~s-~~tvs~~l~-~Le~~glv~r~~~~~d~r 90 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVT-QSAITASVD-KLEEMGLVVRVRDREDRR 90 (146)
T ss_dssp TSCBCHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEEECSSCTT
T ss_pred cCCcCHHHHHHHhCCC-chhHHHHHH-HHHHCCCEEeecCCCCCc
Confidence 5679999999999997 778877766 888899999887765443
No 32
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=73.55 E-value=2.3 Score=34.31 Aligned_cols=42 Identities=10% Similarity=0.215 Sum_probs=33.3
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE---EecCC
Q 025856 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG---KLDQL 148 (247)
Q Consensus 105 ~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~G---kIDQ~ 148 (247)
..+..+||.+|++.++++ ...|=..+- .....|+|++ .+|..
T Consensus 37 ~~~~~~s~~eLA~~lglS-~~tv~~rl~-~L~~~G~I~~~~a~vd~~ 81 (171)
T 2e1c_A 37 QNDGKAPLREISKITGLA-ESTIHERIR-KLRESGVIKKFTAIIDPE 81 (171)
T ss_dssp HHCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSSCCCCCCCCGG
T ss_pred HHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEeeeEEECHH
Confidence 445679999999999997 888877777 7888999976 35553
No 33
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=73.53 E-value=7.8 Score=29.77 Aligned_cols=47 Identities=17% Similarity=0.331 Sum_probs=36.6
Q ss_pred hhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE---EecCC
Q 025856 100 VLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG---KLDQL 148 (247)
Q Consensus 100 llsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~G---kIDQ~ 148 (247)
|+.+...+..+|+.+|++.++++ ...|=..+= .....|+|.+ .+|..
T Consensus 8 il~~L~~~~~~~~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~d~~ 57 (150)
T 2pn6_A 8 ILKILQYNAKYSLDEIAREIRIP-KATLSYRIK-KLEKDGVIKGYYAYINPA 57 (150)
T ss_dssp HHHHHTTCTTSCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSSCCCCCCCCGG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEEEEEeecCHH
Confidence 44444556679999999999997 888877766 7888999987 56653
No 34
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=73.35 E-value=6.3 Score=31.61 Aligned_cols=65 Identities=11% Similarity=0.109 Sum_probs=46.1
Q ss_pred cchHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 025856 87 LVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (247)
Q Consensus 87 L~~~~~~KLr~LtllsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~V 154 (247)
++....-=+|.|..+....+++.+|-.+|++.+++| ..-|+.++- ..-.+|+|..+= ..++-+..
T Consensus 22 lS~~~~yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~-~~~l~kil~-~L~~aGlv~s~r-G~~GGy~L 86 (159)
T 3lwf_A 22 ITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLS-EHYLEQLIG-PLRNAGIVKSIR-GAHGGYVL 86 (159)
T ss_dssp CCHHHHHHHHHHHHHHHTTTSCCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEC-STTCEEEE
T ss_pred CchHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCeEEEec-CCCCceEe
Confidence 444433445555555544456689999999999998 999999988 889999998763 33444443
No 35
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=73.15 E-value=11 Score=27.81 Aligned_cols=46 Identities=17% Similarity=0.126 Sum_probs=37.3
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 025856 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (247)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~V 154 (247)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++....
T Consensus 41 ~~~~~~~ela~~l~~s-~~tvs~~l~-~L~~~glv~~~~~~~d~R~~~ 86 (138)
T 3bpv_A 41 EPGIKQDELATFFHVD-KGTIARTLR-RLEESGFIEREQDPENRRRYI 86 (138)
T ss_dssp STTCBHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEE
T ss_pred cCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeecCCCCceeEE
Confidence 4678999999999997 888887766 888899999888876655443
No 36
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=73.08 E-value=15 Score=26.80 Aligned_cols=63 Identities=5% Similarity=0.032 Sum_probs=45.6
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCCCCCCcHHHHHHHHHHHHHH
Q 025856 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNWLTT 180 (247)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~V~~~~~Rdl~~~q~~~l~~~L~~W~~~ 180 (247)
+.+++.+|++.++++ ...|-..+= .....|+|..+-+.. .+. |. +.++.+..+.+.|..|...
T Consensus 37 ~~~s~~eLa~~lgis-~stvs~~L~-~L~~~GlV~~~~~gr--~~~--y~----l~~~~~~~l~~~l~~~~~~ 99 (108)
T 2kko_A 37 GERAVEAIATATGMN-LTTASANLQ-ALKSGGLVEARREGT--RQY--YR----IAGEDVARLFALVQVVADE 99 (108)
T ss_dssp CCEEHHHHHHHHTCC-HHHHHHHHH-HHHHHTSEEEEEETT--EEE--EE----ESCHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEeCC--EEE--EE----EChHHHHHHHHHHHHHhhH
Confidence 568999999999997 788887766 778899998775432 222 21 2235577888888888743
No 37
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=71.47 E-value=12 Score=27.74 Aligned_cols=42 Identities=10% Similarity=0.051 Sum_probs=34.7
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025856 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (247)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~ 151 (247)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 42 ~~~t~~~la~~l~~s-~~~vs~~l~-~Le~~gli~r~~~~~d~R 83 (144)
T 1lj9_A 42 PGIIQEKIAELIKVD-RTTAARAIK-RLEEQGFIYRQEDASNKK 83 (144)
T ss_dssp TTEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECSSCTT
T ss_pred cCcCHHHHHHHHCCC-HhHHHHHHH-HHHHCCCEEeecCCCCCc
Confidence 478999999999997 788877666 888899999888775544
No 38
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=71.29 E-value=3.6 Score=33.11 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=33.5
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE---EecCC
Q 025856 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG---KLDQL 148 (247)
Q Consensus 105 ~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~G---kIDQ~ 148 (247)
..+..+|+.+|++.++++ ...|-..+- .....|+|.+ .+|..
T Consensus 27 ~~~~~~s~~eLA~~lglS-~~tv~~~l~-~L~~~G~I~~~~~~~d~~ 71 (171)
T 2ia0_A 27 KKDARLTISELSEQLKKP-ESTIHFRIK-KLQERGVIERYTIILGEQ 71 (171)
T ss_dssp HHCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEEEEECTT
T ss_pred HHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEeecccCCHH
Confidence 344579999999999997 888887777 8888999975 45554
No 39
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=70.54 E-value=22 Score=24.72 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=33.0
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecC
Q 025856 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (247)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ 147 (247)
..++..+|++.++++ ...|=..|= .....|+|...-+.
T Consensus 33 ~~~s~~ela~~l~is-~~tv~~~l~-~L~~~glv~~~~~~ 70 (109)
T 1sfx_A 33 GGMRVSEIARELDLS-ARFVRDRLK-VLLKRGFVRREIVE 70 (109)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEEE
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEEEeec
Confidence 459999999999997 888888777 88999999987776
No 40
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=70.46 E-value=2.9 Score=32.56 Aligned_cols=42 Identities=7% Similarity=0.256 Sum_probs=32.6
Q ss_pred hhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE
Q 025856 100 VLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (247)
Q Consensus 100 llsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~G 143 (247)
|+.+...+..+|+.+|++.++++ ...|-..+= .....|+|++
T Consensus 12 il~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~ 53 (151)
T 2cyy_A 12 IIKILQNDGKAPLREISKITGLA-ESTIHERIR-KLRESGVIKK 53 (151)
T ss_dssp HHHHHHHCTTCCHHHHHHHHCSC-HHHHHHHHH-HHHHHTSSCC
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEE
Confidence 33333445679999999999997 888877776 7888999975
No 41
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=70.12 E-value=20 Score=26.73 Aligned_cols=41 Identities=7% Similarity=0.034 Sum_probs=33.6
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025856 109 VLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (247)
Q Consensus 109 ~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~ 151 (247)
.++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 45 ~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R 85 (145)
T 3g3z_A 45 SRTQKHIGEKWSLP-KQTVSGVCK-TLAGQGLIEWQEGEQDRR 85 (145)
T ss_dssp SBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEECCCSSCGG
T ss_pred CCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEeeccCCCCCc
Confidence 49999999999997 778877766 888899999877765443
No 42
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=70.05 E-value=18 Score=26.71 Aligned_cols=61 Identities=23% Similarity=0.211 Sum_probs=42.0
Q ss_pred cchHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCC-EEEE
Q 025856 87 LVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRR-CFEV 154 (247)
Q Consensus 87 L~~~~~~KLr~LtllsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~-~v~V 154 (247)
+++.+ .+.|.++.+.. ..++..+|++.++++ ...|=..|= .....|+|.-.-|..++ .+.+
T Consensus 24 l~~~~---~~il~~L~~~~--~~~t~~ela~~l~~~-~stvs~~l~-~L~~~G~v~r~~~~~d~r~~~~ 85 (152)
T 1ku9_A 24 LNKSV---GAVYAILYLSD--KPLTISDIMEELKIS-KGNVSMSLK-KLEELGFVRKVWIKGERKNYYE 85 (152)
T ss_dssp CCHHH---HHHHHHHHHCS--SCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEECCTTCSSCEEE
T ss_pred CChhH---HHHHHHHHHcC--CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEecCCCceEEEe
Confidence 44544 33444443332 469999999999998 777777666 78889999988776554 3344
No 43
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=69.43 E-value=13 Score=27.84 Aligned_cols=49 Identities=12% Similarity=0.156 Sum_probs=37.3
Q ss_pred HHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 025856 94 KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (247)
Q Consensus 94 KLr~LtllsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~Gk 144 (247)
-++.|..+....+++.++-.+|++.++++ ..-|...+- ..-..|+|...
T Consensus 11 al~iL~~la~~~~~~~~s~~ela~~~~i~-~~~v~~il~-~L~~~Glv~~~ 59 (129)
T 2y75_A 11 GLTIMIELAKKHGEGPTSLKSIAQTNNLS-EHYLEQLVS-PLRNAGLVKSI 59 (129)
T ss_dssp HHHHHHHHHHTTTSCCBCHHHHHHHTTSC-HHHHHHHHH-HHHHTTSEEEC
T ss_pred HHHHHHHHHhCCCCCcCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCceEec
Confidence 34444444333346789999999999998 999999888 88889998753
No 44
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=69.14 E-value=14 Score=25.75 Aligned_cols=41 Identities=12% Similarity=0.116 Sum_probs=33.2
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecC
Q 025856 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (247)
Q Consensus 105 ~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ 147 (247)
..+..++..+|++.++++ ...|-..+= .....|+|...=|.
T Consensus 34 ~~~~~~s~~ela~~l~is-~~tvs~~l~-~L~~~glv~~~~~~ 74 (99)
T 3cuo_A 34 SGSPGTSAGELTRITGLS-ASATSQHLA-RMRDEGLIDSQRDA 74 (99)
T ss_dssp TTCCSEEHHHHHHHHCCC-HHHHHHHHH-HHHHTTSEEEEECS
T ss_pred HhCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEecC
Confidence 445679999999999997 778877766 78889999876553
No 45
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=68.55 E-value=18 Score=26.83 Aligned_cols=45 Identities=20% Similarity=0.090 Sum_probs=36.3
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEE
Q 025856 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCF 152 (247)
Q Consensus 106 ~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v 152 (247)
.+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++..
T Consensus 49 ~~~~~t~~~la~~l~~s-~~~vs~~l~-~L~~~glv~r~~~~~d~R~ 93 (146)
T 2fbh_A 49 HRDSPTQRELAQSVGVE-GPTLARLLD-GLESQGLVRRLAVAEDRRA 93 (146)
T ss_dssp CSSCCBHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEECCBTTBCS
T ss_pred cCCCCCHHHHHHHhCCC-hhhHHHHHH-HHHHCCCeeecCCCcccCe
Confidence 45679999999999997 788877666 8888999998877655443
No 46
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=68.01 E-value=8.6 Score=30.32 Aligned_cols=48 Identities=15% Similarity=0.299 Sum_probs=37.4
Q ss_pred hhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE---EecCCC
Q 025856 100 VLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG---KLDQLR 149 (247)
Q Consensus 100 llsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~G---kIDQ~~ 149 (247)
|+.+.+.+..+||.+|++.+|++ ...|-.-+= +....|+|+| .+|...
T Consensus 8 il~~L~~~~~~s~~~la~~lg~s-~~tv~~rl~-~L~~~g~i~~~~a~~~~~~ 58 (162)
T 3i4p_A 8 ILRILQEDSTLAVADLAKKVGLS-TTPCWRRIQ-KMEEDGVIRRRVALLDPVK 58 (162)
T ss_dssp HHHHHTTCSCSCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSSCCCCCCCCTTT
T ss_pred HHHHHHHCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeeeceeeeCHHH
Confidence 55555667789999999999997 888877766 7888999884 566543
No 47
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=67.38 E-value=31 Score=24.64 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=31.0
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEec
Q 025856 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLD 146 (247)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkID 146 (247)
+.++..+|++.++++ ...|-..+= .....|+|.-.-+
T Consensus 33 ~~~~~~ela~~l~is-~~tv~~~l~-~L~~~gli~~~~~ 69 (114)
T 2oqg_A 33 ADQSASSLATRLPVS-RQAIAKHLN-ALQACGLVESVKV 69 (114)
T ss_dssp SCBCHHHHHHHSSSC-HHHHHHHHH-HHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeeEEec
Confidence 458999999999997 788887776 7888999987655
No 48
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=67.03 E-value=19 Score=27.70 Aligned_cols=65 Identities=11% Similarity=0.038 Sum_probs=45.2
Q ss_pred cchHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeec
Q 025856 87 LVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAA 158 (247)
Q Consensus 87 L~~~~~~KLr~LtllsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~V~~~~ 158 (247)
|++.+.. .|..|+..+..++-.+|++.++++ ...|=..|= .....|+|.=.-|..+++...-+.+
T Consensus 29 Lt~~q~~-----vL~~L~~~~~~~~~~eLa~~l~~~-~~tvs~~v~-~Le~~GlV~R~~~~~DrR~~~l~LT 93 (151)
T 4aik_A 29 LTQTHWV-----TLYNINRLPPEQSQIQLAKAIGIE-QPSLVRTLD-QLEEKGLITRHTSANDRRAKRIKLT 93 (151)
T ss_dssp CCHHHHH-----HHHHHHHSCTTSCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEECSSCTTCEEEEEC
T ss_pred CCHHHHH-----HHHHHHHcCCCCcHHHHHHHHCcC-HHHHHHHHH-HHHhCCCeEeecCCCCCcchhhhcC
Confidence 5665532 233344445566778999999997 777776655 8888999999999877765544433
No 49
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=64.26 E-value=9.5 Score=29.76 Aligned_cols=48 Identities=13% Similarity=0.147 Sum_probs=37.3
Q ss_pred HHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEe
Q 025856 95 LKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKL 145 (247)
Q Consensus 95 Lr~LtllsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkI 145 (247)
+|.|..+.. .+++.++-.+|++.++++ ..-|+.++- ..-.+|+|...=
T Consensus 17 l~~L~~La~-~~~~~~~~~~iA~~~~i~-~~~l~kil~-~L~~~Glv~s~r 64 (149)
T 1ylf_A 17 VHILSILKN-NPSSLCTSDYMAESVNTN-PVVIRKIMS-YLKQAGFVYVNR 64 (149)
T ss_dssp HHHHHHHHH-SCGGGCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEC-
T ss_pred HHHHHHHHh-CCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEEEcc
Confidence 444444443 245689999999999998 999999988 899999988543
No 50
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=63.79 E-value=11 Score=28.50 Aligned_cols=44 Identities=9% Similarity=0.090 Sum_probs=30.0
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE--ecCCCCE
Q 025856 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK--LDQLRRC 151 (247)
Q Consensus 106 ~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~Gk--IDQ~~~~ 151 (247)
....++..+|++.++++ ...|=..|= .....|+|.-. -|..++.
T Consensus 48 ~~~~~t~~eLa~~l~~~-~~~vs~~l~-~Le~~Glv~r~~~~~~~D~R 93 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVN-KAAVSRRVK-KLLNAELVKLEKPDSNTDQR 93 (151)
T ss_dssp HHSCBCHHHHHHHHCSC-SSHHHHHHH-HHHHTTSEEC----------
T ss_pred HcCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeeCCCCCCCCC
Confidence 44679999999999997 677776666 88889999963 3555544
No 51
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=63.47 E-value=25 Score=27.22 Aligned_cols=42 Identities=12% Similarity=0.137 Sum_probs=34.9
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCC
Q 025856 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRR 150 (247)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~ 150 (247)
....+|.+|++.++|+ ..-|=..|= .....|+|..+-++.++
T Consensus 35 ~g~~~~~eLa~~lgis-~~tls~~L~-~Le~~GlI~r~~~~~d~ 76 (146)
T 2f2e_A 35 EGLTRFGEFQKSLGLA-KNILAARLR-NLVEHGVMVAVPAESGS 76 (146)
T ss_dssp TTCCSHHHHHHHHCCC-HHHHHHHHH-HHHHTTSEEEEECSSSS
T ss_pred hCCCCHHHHHHHhCCC-HHHHHHHHH-HHHHCCCEEEEecCCCC
Confidence 3578999999999997 777776666 78889999999987765
No 52
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=63.09 E-value=12 Score=27.02 Aligned_cols=45 Identities=13% Similarity=0.211 Sum_probs=34.8
Q ss_pred HHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE
Q 025856 93 LKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (247)
Q Consensus 93 ~KLr~LtllsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~G 143 (247)
.+.+.|.++. .. . +|+.+|+++|+|+ ...|-..|- ..-..|+|.-
T Consensus 18 ~~~~IL~lL~--~~-g-~sa~eLAk~LgiS-k~aVr~~L~-~Le~eG~I~~ 62 (82)
T 1oyi_A 18 IVCEAIKTIG--IE-G-ATAAQLTRQLNME-KREVNKALY-DLQRSAMVYS 62 (82)
T ss_dssp HHHHHHHHHS--SS-T-EEHHHHHHHSSSC-HHHHHHHHH-HHHHHTSSEE
T ss_pred HHHHHHHHHH--Hc-C-CCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEe
Confidence 4555565555 33 3 9999999999998 888888877 7778898875
No 53
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=62.89 E-value=14 Score=27.91 Aligned_cols=44 Identities=16% Similarity=0.180 Sum_probs=30.0
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEE
Q 025856 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCF 152 (247)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v 152 (247)
+..++..+|++.++++ ...|=..|= .....|+|.-+-|..+++.
T Consensus 53 ~~~~~~~eLa~~l~~~-~~~vs~~l~-~L~~~Glv~r~~~~~D~R~ 96 (149)
T 4hbl_A 53 ENPQTLNSIGRHLDLS-SNTLTPMLK-RLEQSGWVKRERQQSDKRQ 96 (149)
T ss_dssp SSSEEHHHHHHHHTCC-HHHHHHHHH-HHHHHTSEEC---------
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEeeCCCCCCcce
Confidence 3678999999999997 778877666 8888999998877655543
No 54
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=62.09 E-value=21 Score=26.30 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=31.2
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecC
Q 025856 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (247)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ 147 (247)
+..+..+|++.++++ ...|=.-+= .....|+|..+-+.
T Consensus 30 ~~~~~~eLa~~l~is-~~tvs~hL~-~L~~~GlV~~~~~g 67 (118)
T 3f6o_A 30 GPATVSELAKPFDMA-LPSFMKHIH-FLEDSGWIRTHKQG 67 (118)
T ss_dssp CCEEHHHHHTTCCSC-HHHHHHHHH-HHHHTTSEEEEEET
T ss_pred CCCCHHHHHHHhCcC-HHHHHHHHH-HHHHCCCeEEEecC
Confidence 567999999999997 777776666 67789999987773
No 55
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=60.95 E-value=17 Score=27.87 Aligned_cols=47 Identities=13% Similarity=0.058 Sum_probs=37.8
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEe
Q 025856 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQF 156 (247)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~V~~ 156 (247)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..+++...-.
T Consensus 59 ~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~DrR~~~l~ 105 (162)
T 3k0l_A 59 PNLSNAKLAERSFIK-PQSANKILQ-DLLANGWIEKAPDPTHGRRILVT 105 (162)
T ss_dssp TTCCHHHHHHHHTSC-GGGHHHHHH-HHHHTTSEEEEECCSSSCCEEEE
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCcCeEecCCCCcCCeeEeE
Confidence 469999999999997 777777666 88889999999987766544443
No 56
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=60.57 E-value=14 Score=28.25 Aligned_cols=46 Identities=13% Similarity=0.039 Sum_probs=35.2
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 025856 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (247)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~V~ 155 (247)
..++..+|++.++++ ...|=..|= .....|+|.-+-|..++....-
T Consensus 63 ~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~DrR~~~l 108 (159)
T 3s2w_A 63 DGINQESLSDYLKID-KGTTARAIQ-KLVDEGYVFRQRDEKDRRSYRV 108 (159)
T ss_dssp CSEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECC---CCEEE
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEEecCCCCCCeeEE
Confidence 568999999999997 788877766 8888999999887766654433
No 57
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=59.76 E-value=30 Score=26.80 Aligned_cols=47 Identities=11% Similarity=-0.017 Sum_probs=31.9
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 025856 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (247)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~V~ 155 (247)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..+++...-
T Consensus 66 ~~~~t~~eLa~~l~i~-~~tvs~~l~-~Le~~GlV~r~~~~~DrR~~~l 112 (166)
T 3deu_A 66 PPDQSQIQLAKAIGIE-QPSLVRTLD-QLEDKGLISRQTCASDRRAKRI 112 (166)
T ss_dssp CSSEEHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEC--------CEE
T ss_pred CCCCCHHHHHHHHCCC-HhhHHHHHH-HHHHCCCEEeeCCCCCCCeeEE
Confidence 4569999999999997 777777666 8888999998887766554433
No 58
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=59.06 E-value=15 Score=28.49 Aligned_cols=34 Identities=3% Similarity=0.074 Sum_probs=30.5
Q ss_pred ChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEec
Q 025856 111 PYDELMEELDVTNVRELEDFLINECMYTGIVRGKLD 146 (247)
Q Consensus 111 sy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkID 146 (247)
+-++|++.++|| ..-|+.++- ..-.+|+|...=.
T Consensus 25 s~~~IA~~~~i~-~~~l~kIl~-~L~~aGlv~s~rG 58 (145)
T 1xd7_A 25 SSEIIADSVNTN-PVVVRRMIS-LLKKADILTSRAG 58 (145)
T ss_dssp CHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEECCSS
T ss_pred CHHHHHHHHCcC-HHHHHHHHH-HHHHCCceEeecC
Confidence 999999999998 999999998 8999999976543
No 59
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=59.06 E-value=13 Score=27.24 Aligned_cols=43 Identities=9% Similarity=0.155 Sum_probs=34.3
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025856 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (247)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~ 151 (247)
+..++..+|++.++++ ...|-..|= .....|+|.-.-|..++.
T Consensus 45 ~~~~~~~ela~~l~~~-~~tvs~~l~-~L~~~gli~r~~~~~d~r 87 (139)
T 3bja_A 45 SGKVSMSKLIENMGCV-PSNMTTMIQ-RMKRDGYVMTEKNPNDQR 87 (139)
T ss_dssp SCSEEHHHHHHHCSSC-CTTHHHHHH-HHHHTTSEEEEECSSCTT
T ss_pred cCCcCHHHHHHHHCCC-hhHHHHHHH-HHHHCCCeeeccCCCCCc
Confidence 4569999999999997 777777665 788899999887765444
No 60
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=58.49 E-value=29 Score=24.39 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=31.9
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCC
Q 025856 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQL 148 (247)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~ 148 (247)
+..++.+|++.++++ ...|-.-+= .....|+|..+-+..
T Consensus 35 ~~~~~~ela~~l~is-~~tvs~~L~-~L~~~Glv~~~~~g~ 73 (98)
T 3jth_A 35 QELSVGELCAKLQLS-QSALSQHLA-WLRRDGLVTTRKEAQ 73 (98)
T ss_dssp SCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEECCTT
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEeCC
Confidence 689999999999997 777777666 778899998875543
No 61
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=58.41 E-value=16 Score=29.13 Aligned_cols=55 Identities=13% Similarity=0.176 Sum_probs=39.7
Q ss_pred HHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEE
Q 025856 95 LKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (247)
Q Consensus 95 Lr~LtllsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~ 153 (247)
+|.|..+... ++..++-.+|++.++|+ ..-|+..+- ..-.+|+|... -..++-+.
T Consensus 15 lr~l~~La~~-~~~~~s~~~IA~~~~is-~~~l~kil~-~L~~aGlv~s~-rG~~GGy~ 69 (162)
T 3k69_A 15 VHSILYLDAH-RDSKVASRELAQSLHLN-PVMIRNILS-VLHKHGYLTGT-VGKNGGYQ 69 (162)
T ss_dssp HHHHHHHHTT-TTSCBCHHHHHHHHTSC-GGGTHHHHH-HHHHTTSSEEE-CSTTCEEE
T ss_pred HHHHHHHHhC-CCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEee-cCCCCCeE
Confidence 4444444432 35679999999999998 999999888 88999999755 33344443
No 62
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=58.13 E-value=41 Score=26.22 Aligned_cols=103 Identities=8% Similarity=0.065 Sum_probs=59.1
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhHhcCccE-EEecCCCCEEEEE----------eecCCCCCCCcHHHHHHHHHHH
Q 025856 109 VLPYDELMEELDVTNVRELEDFLINECMYTGIVR-GKLDQLRRCFEVQ----------FAAGRDLRPGQLGSMIQTLSNW 177 (247)
Q Consensus 109 ~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~-GkIDQ~~~~v~V~----------~~~~Rdl~~~q~~~l~~~L~~W 177 (247)
.++..++++.+||+ .+.|-.|-= .|++. ..-+..+...+=. ....-.|+.++ +..-|..|
T Consensus 16 ~~~I~evA~~~gvs-~~tLR~Ye~-----~Gll~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sL~e---Ik~~l~~~ 86 (148)
T 3gpv_A 16 YYTIGQVAKMQHLT-ISQIRYYDK-----QGLFPFLQRNEKGDRIFNEEALKYLEMILCLKNTGMPIQK---IKQFIDWS 86 (148)
T ss_dssp CBCHHHHHHHTTCC-HHHHHHHHH-----TTCCTTCEECTTCCEEBCHHHHHHHHHHHHHHTTTCCHHH---HHHHHHHH
T ss_pred ceeHHHHHHHHCcC-HHHHHHHHH-----CCCCCCCcCCCCCCeecCHHHHHHHHHHHHHHHcCCCHHH---HHHHHHhh
Confidence 57899999999998 888887722 47874 4555444332211 01111122222 23333333
Q ss_pred H---HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhc
Q 025856 178 L---TTSDNLLISIQEKIKWADSMNEMDKKHRKDLEEKVEEAKKSL 220 (247)
Q Consensus 178 ~---~~~~~vl~~Ie~~i~~a~~~~~~~~~~~~~~~~~~~~~k~~~ 220 (247)
. ..+......++++........++-.+..+.++..++..+..+
T Consensus 87 ~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~ 132 (148)
T 3gpv_A 87 MEGDSTILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEI 132 (148)
T ss_dssp HHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 245666677777777777777777777777777777666655
No 63
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=57.77 E-value=11 Score=26.68 Aligned_cols=42 Identities=12% Similarity=0.095 Sum_probs=33.4
Q ss_pred HhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccE
Q 025856 99 TVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVR 142 (247)
Q Consensus 99 tllsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~ 142 (247)
.|+.+....+.++.++|++.++++ ...|..-+- .....|+|.
T Consensus 6 ~Il~~L~~~g~vsv~eLa~~l~VS-~~TIRrdL~-~Le~~G~l~ 47 (78)
T 1xn7_A 6 QVRDLLALRGRMEAAQISQTLNTP-QPMINAMLQ-QLESMGKAV 47 (78)
T ss_dssp HHHHHHHHSCSBCHHHHHHHTTCC-HHHHHHHHH-HHHHHTSEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEE
Confidence 455666678899999999999997 888877766 777778763
No 64
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=56.92 E-value=60 Score=24.99 Aligned_cols=72 Identities=18% Similarity=0.126 Sum_probs=51.1
Q ss_pred HHHHHhhhcccC-CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE--EecCCCCEEEEEeecCCCCCCCcHHHHH
Q 025856 95 LKQLTVLTLAET-NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG--KLDQLRRCFEVQFAAGRDLRPGQLGSMI 171 (247)
Q Consensus 95 Lr~LtllsLa~~-~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~G--kIDQ~~~~v~V~~~~~Rdl~~~q~~~l~ 171 (247)
+-.+-|...... ..-.+.++|++.++++ ..+|...|= ..+..|+|.= +-|..++....-+. ..+.
T Consensus 36 ~lLl~L~~~~~~g~~~ps~~~LA~~~~~s-~~~v~~~L~-~L~~KGlI~i~~~~d~~g~~~~~ydL----------~pL~ 103 (135)
T 2v79_A 36 ILLLKIKMHLEKGSYFPTPNQLQEGMSIS-VEECTNRLR-MFIQKGFLFIEECEDQNGIKFEKYSL----------QPLW 103 (135)
T ss_dssp HHHHHHHHHHTTTCCSCCHHHHHTTSSSC-HHHHHHHHH-HHHHHTSCEEEEEECTTCCEEEEEEC----------HHHH
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEeEecCCCceEEEeeH----------HHHH
Confidence 333445554443 4568999999999997 999999988 9999999986 55666554444333 3477
Q ss_pred HHHHHHH
Q 025856 172 QTLSNWL 178 (247)
Q Consensus 172 ~~L~~W~ 178 (247)
++|..+.
T Consensus 104 ekL~~~~ 110 (135)
T 2v79_A 104 GKLYEYI 110 (135)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776665
No 65
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=56.84 E-value=25 Score=26.59 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=34.1
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025856 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (247)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~ 151 (247)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 57 ~~~t~~ela~~l~is-~~tvs~~l~-~Le~~Gli~r~~~~~d~R 98 (154)
T 2eth_A 57 GPKKMKEIAEFLSTT-KSNVTNVVD-SLEKRGLVVREMDPVDRR 98 (154)
T ss_dssp CCBCHHHHHHHTTSC-HHHHHHHHH-HHHHTTSEEEEECTTTSS
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeeCCCCCcc
Confidence 369999999999997 778877665 888899999887765444
No 66
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=56.69 E-value=20 Score=26.74 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=33.9
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEE
Q 025856 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (247)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~ 153 (247)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++...
T Consensus 55 ~~~t~~ela~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~d~R~~ 98 (150)
T 2rdp_A 55 GDLTVGELSNKMYLA-CSTTTDLVD-RMERNGLVARVRDEHDRRVV 98 (150)
T ss_dssp CSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECCC---CE
T ss_pred CCCCHHHHHHHHCCC-chhHHHHHH-HHHHCCCeeecCCCCCccee
Confidence 469999999999997 788877766 88889999988776555433
No 67
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=56.03 E-value=22 Score=24.39 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=30.2
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 025856 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (247)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~Gk 144 (247)
...++..+|++.++++ ...|-..+- .....|+|...
T Consensus 12 ~~~~s~~eLa~~lgvs-~~tv~r~L~-~L~~~GlI~~~ 47 (81)
T 2htj_A 12 HNGGKTAEIAEALAVT-DYQARYYLL-LLEKAGMVQRS 47 (81)
T ss_dssp SCCCCHHHHHHHHTSC-HHHHHHHHH-HHHHHTSEEEE
T ss_pred cCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEe
Confidence 3569999999999997 888887777 78889999853
No 68
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=54.80 E-value=16 Score=27.15 Aligned_cols=42 Identities=5% Similarity=0.015 Sum_probs=32.4
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025856 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (247)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~ 151 (247)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 50 ~~~t~~eLa~~l~~~-~~~vs~~l~-~L~~~Glv~r~~~~~D~R 91 (143)
T 3oop_A 50 EPISQKEIALWTKKD-TPTVNRIVD-VLLRKELIVREISTEDRR 91 (143)
T ss_dssp SSEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEC----CC
T ss_pred CCcCHHHHHHHHCCC-HhhHHHHHH-HHHHCCCeeccCCCccCc
Confidence 678999999999997 788877766 888999999887665544
No 69
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=54.38 E-value=14 Score=27.69 Aligned_cols=42 Identities=2% Similarity=-0.083 Sum_probs=29.4
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025856 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (247)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~ 151 (247)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 53 ~~~t~~ela~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R 94 (148)
T 3nrv_A 53 SDCSVQKISDILGLD-KAAVSRTVK-KLEEKKYIEVNGHSEDKR 94 (148)
T ss_dssp SSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEC--------
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeecCCCCcc
Confidence 489999999999997 778877666 888899999877665543
No 70
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=54.15 E-value=48 Score=24.18 Aligned_cols=45 Identities=13% Similarity=0.006 Sum_probs=36.6
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 025856 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (247)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~V 154 (247)
..++..+|++.++++ ...|-..|= .....|+|.-.-|..++....
T Consensus 49 ~~~t~~ela~~l~~s-~~~vs~~l~-~Le~~glv~r~~~~~d~R~~~ 93 (142)
T 2fbi_A 49 GEMESYQLANQACIL-RPSMTGVLA-RLERDGIVRRWKAPKDQRRVY 93 (142)
T ss_dssp CSEEHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEE
T ss_pred CCCCHHHHHHHHCCC-HhHHHHHHH-HHHHCCCEEeecCCCCCCeeE
Confidence 359999999999997 888887766 888999999888876655443
No 71
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=53.90 E-value=23 Score=26.60 Aligned_cols=43 Identities=12% Similarity=0.106 Sum_probs=34.9
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025856 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (247)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~ 151 (247)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 49 ~~~~t~~ela~~l~~s-~~tvs~~l~-~Le~~glv~r~~~~~d~R 91 (155)
T 1s3j_A 49 HGSLKVSEIAERMEVK-PSAVTLMAD-RLEQKNLIARTHNTKDRR 91 (155)
T ss_dssp HSEEEHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEECSSCTT
T ss_pred cCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEeecCCCCCCc
Confidence 3468999999999997 788887766 888899999887765443
No 72
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=53.25 E-value=55 Score=24.33 Aligned_cols=31 Identities=19% Similarity=0.172 Sum_probs=21.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhcCccc
Q 025856 194 WADSMNEMDKKHRKDLEEKVEEAKKSLSHKK 224 (247)
Q Consensus 194 ~a~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 224 (247)
.||+|.+..++.+..++.+++.++..|+|++
T Consensus 66 EAN~MVa~ar~e~~~~e~kn~~L~~qL~d~d 96 (97)
T 2eqb_B 66 EANNMVADARKEKYAIEILNKRLTEQLREKD 96 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4677777777777777777777777665543
No 73
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=52.87 E-value=31 Score=25.66 Aligned_cols=47 Identities=13% Similarity=0.010 Sum_probs=33.7
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 025856 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (247)
Q Consensus 106 ~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~V 154 (247)
.+..++..+|++.++++ ...|=..|= .....|+|.-.-|..+++...
T Consensus 47 ~~~~~t~~eLa~~l~~~-~~tvs~~l~-~L~~~Glv~r~~~~~D~R~~~ 93 (140)
T 3hsr_A 47 NDEKLNIKKLGERVFLD-SGTLTPLLK-KLEKKDYVVRTREEKDERNLQ 93 (140)
T ss_dssp TTCEEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEC-------CE
T ss_pred HcCCcCHHHHHHHHCCC-hhhHHHHHH-HHHHCCCeEecCCCCCcceee
Confidence 35689999999999997 788887766 889999999888776655433
No 74
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=52.83 E-value=42 Score=25.34 Aligned_cols=43 Identities=23% Similarity=0.125 Sum_probs=33.3
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025856 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (247)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~ 151 (247)
...++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 64 ~~~~t~~ela~~l~is-~~tvs~~l~-~Le~~Gli~r~~~~~d~R 106 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVE-QSTLSRALD-GLQADGLVRREVDSDDQR 106 (162)
T ss_dssp SCSEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEC--CCS
T ss_pred CCCCCHHHHHHHHCCC-hhHHHHHHH-HHHHCCCEEecCCCCCCC
Confidence 3468999999999997 778877666 888899999887664443
No 75
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=52.11 E-value=35 Score=25.00 Aligned_cols=45 Identities=11% Similarity=0.077 Sum_probs=35.4
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 025856 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (247)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~V 154 (247)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++....
T Consensus 46 ~~~t~~ela~~l~~~-~~tvs~~l~-~Le~~Gli~r~~~~~D~R~~~ 90 (139)
T 3eco_A 46 DGLTQNDIAKALQRT-GPTVSNLLR-NLERKKLIYRYVDAQDTRRKN 90 (139)
T ss_dssp TCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECCC--CCEE
T ss_pred CCcCHHHHHHHhCCC-cccHHHHHH-HHHHCCCEeecCCCCCCCeee
Confidence 579999999999997 778877766 888899999888876655433
No 76
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=51.84 E-value=14 Score=24.96 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=32.8
Q ss_pred HHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE
Q 025856 96 KQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (247)
Q Consensus 96 r~LtllsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~G 143 (247)
+.|.++ +...+.++..+|++.|+++ ...|...|= ..-..|+|..
T Consensus 14 ~IL~~L--~~~~~~~s~~eLA~~lgls-r~tv~~~l~-~L~~~G~I~~ 57 (67)
T 2heo_A 14 KILQVL--SDDGGPVAIFQLVKKCQVP-KKTLNQVLY-RLKKEDRVSS 57 (67)
T ss_dssp HHHHHH--HHHCSCEEHHHHHHHHCSC-HHHHHHHHH-HHHHTTSEEE
T ss_pred HHHHHH--HHcCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEec
Confidence 344444 2344679999999999998 888988766 7777788754
No 77
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=50.60 E-value=12 Score=27.23 Aligned_cols=44 Identities=14% Similarity=0.076 Sum_probs=35.3
Q ss_pred HhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 025856 99 TVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (247)
Q Consensus 99 tllsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~Gk 144 (247)
.|+.+....+.++.++|++.++++ ...|..-|- .....|+|.=.
T Consensus 6 ~Il~~L~~~g~vsv~eLA~~l~VS-~~TIRrDL~-~Le~~G~l~R~ 49 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSARLQTP-QPLIDAMLE-RMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHHHTTCC-HHHHHHHHH-HHHTTCCSEEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEE
Confidence 355566678899999999999997 888887777 78888877644
No 78
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=50.18 E-value=32 Score=25.63 Aligned_cols=42 Identities=12% Similarity=0.123 Sum_probs=34.4
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025856 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (247)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~ 151 (247)
..++..+|++.++++ ...|-..|= .....|+|.-.-|..++.
T Consensus 53 ~~~t~~ela~~l~~~-~~~vs~~l~-~Le~~Glv~r~~~~~d~R 94 (152)
T 3bj6_A 53 PGATAPQLGAALQMK-RQYISRILQ-EVQRAGLIERRTNPEHAR 94 (152)
T ss_dssp TTEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEECCSSSTT
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCeeecCCccccc
Confidence 468999999999997 788887766 888899999887764443
No 79
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=50.05 E-value=25 Score=31.40 Aligned_cols=61 Identities=20% Similarity=0.288 Sum_probs=42.8
Q ss_pred CChhhHhhhhCC--CCCcc----hHHHHHHHHHHhhhcccC----CcccChHHHHHHcCCCChHHHHHHHH
Q 025856 72 GTWSDYKNNAGH--LPQLV----PDQVLKLKQLTVLTLAET----NKVLPYDELMEELDVTNVRELEDFLI 132 (247)
Q Consensus 72 Gt~~dy~~~~~~--l~~L~----~~~~~KLr~LtllsLa~~----~k~Isy~~I~~~L~I~~~~evE~llI 132 (247)
|+|..|-..-.. .|-|. +-....+|..+|-.++.. .+.+|.+.|++.|+.++.+++++|+-
T Consensus 177 gNY~rFFrL~~~~~~pyL~aclle~~~~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~~F~~ 247 (316)
T 3t5v_A 177 NFYARFFQLMQSPSLPLLMGFFLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFCN 247 (316)
T ss_dssp CCHHHHHHHHTCTTSCHHHHHHHGGGHHHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHHHHHH
T ss_pred chHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCHHHHHHHHH
Confidence 666666553222 33332 333678888777777653 36899999999999998999999865
No 80
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=49.86 E-value=37 Score=25.67 Aligned_cols=80 Identities=16% Similarity=0.150 Sum_probs=49.1
Q ss_pred cchHHHHHHHHHHhhhcccCC-cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCCCCCC
Q 025856 87 LVPDQVLKLKQLTVLTLAETN-KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPG 165 (247)
Q Consensus 87 L~~~~~~KLr~LtllsLa~~~-k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~V~~~~~Rdl~~~ 165 (247)
|++.+ -+-.+.|......+ .-++.++|++.++++ ..+|-..|= ..+..|+|.=+-+.... ++....=
T Consensus 30 Lt~~e--~~vll~L~~~~~~~~~~ps~~~LA~~l~~s-~~~V~~~l~-~Le~kGlI~~~~~~~~~--------g~~~~~Y 97 (128)
T 2vn2_A 30 LGEGE--LVLLLHMQSFFEEGVLFPTPAELAERMTVS-AAECMEMVR-RLLQKGMIAIEEHTDEQ--------GIRNEKY 97 (128)
T ss_dssp CCHHH--HHHHHHHHHHHTTTCSSCCHHHHHHTSSSC-HHHHHHHHH-HHHHTTSSEECC------------------CE
T ss_pred CCHHH--HHHHHHHHHHHhcCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEeEECCC--------CcEEEEE
Confidence 45544 23445555554433 348999999999997 999999877 89999999876653321 1111112
Q ss_pred cHHHHHHHHHHHH
Q 025856 166 QLGSMIQTLSNWL 178 (247)
Q Consensus 166 q~~~l~~~L~~W~ 178 (247)
++..+.++|..+.
T Consensus 98 dl~pl~~kL~~~~ 110 (128)
T 2vn2_A 98 TLEPLWEKLVHHL 110 (128)
T ss_dssp ECHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHH
Confidence 3455677766655
No 81
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=49.83 E-value=12 Score=26.37 Aligned_cols=34 Identities=6% Similarity=0.222 Sum_probs=28.7
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccE
Q 025856 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVR 142 (247)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~ 142 (247)
+...+..+|+++++++ ...|..-|- ..-..|+|.
T Consensus 22 g~~psv~EIa~~lgvS-~~TVrr~L~-~Le~kG~I~ 55 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLS-IYQVRLYLE-QLHDVGVLE 55 (77)
T ss_dssp TSCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEE
T ss_pred CCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCcEE
Confidence 4789999999999995 888888877 777788875
No 82
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=49.60 E-value=19 Score=27.55 Aligned_cols=42 Identities=14% Similarity=0.222 Sum_probs=33.0
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE---ecCC
Q 025856 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK---LDQL 148 (247)
Q Consensus 105 ~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~Gk---IDQ~ 148 (247)
..+..+|+.+|++.++++ ...+=..+= .....|+|.+. +|..
T Consensus 17 ~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~d~~ 61 (150)
T 2w25_A 17 AADGRATLSELATRAGLS-VSAVQSRVR-RLESRGVVQGYSARINPE 61 (150)
T ss_dssp HHCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEEEEECTG
T ss_pred HHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEEeccChh
Confidence 344579999999999997 888877777 88889999754 5553
No 83
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=48.61 E-value=42 Score=24.77 Aligned_cols=43 Identities=16% Similarity=0.188 Sum_probs=29.1
Q ss_pred cChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 025856 110 LPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (247)
Q Consensus 110 Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~V 154 (247)
++..+|++.++++ ...|=..|= .....|+|.-.-|..++....
T Consensus 52 ~t~~eLa~~l~~s-~~tvs~~l~-~L~~~Glv~r~~~~~d~R~~~ 94 (146)
T 3tgn_A 52 LTNSELARRLNVS-QAAVTKAIK-SLVKEGMLETSKDSKDARVIF 94 (146)
T ss_dssp CCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEC----------C
T ss_pred CCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCeEeccCCCCCceeE
Confidence 9999999999997 788877766 888999999888766655443
No 84
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=48.28 E-value=1.1e+02 Score=24.98 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=31.9
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecC
Q 025856 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (247)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ 147 (247)
+..++.+|++.++++ ...|=.-+= .....|+|...-+.
T Consensus 27 ~~~s~~eLa~~l~is-~stvs~hLk-~Le~~GLV~~~~~~ 64 (202)
T 2p4w_A 27 RPYFVSELSRELGVG-QKAVLEHLR-ILEEAGLIESRVEK 64 (202)
T ss_dssp SCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECC
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCceEEEeec
Confidence 568999999999997 777777666 78889999998773
No 85
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=46.74 E-value=43 Score=24.82 Aligned_cols=55 Identities=13% Similarity=0.175 Sum_probs=39.6
Q ss_pred CcchHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 025856 86 QLVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (247)
Q Consensus 86 ~L~~~~~~KLr~LtllsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~Gk 144 (247)
.+++.+..-|+ .|..++..+..++..+|++.++++ ...|=..|= .....|+|.-.
T Consensus 10 ~lt~~~~~~L~--~l~~l~~~~~~~s~~ela~~l~is-~~tv~~~l~-~Le~~Gli~r~ 64 (139)
T 2x4h_A 10 NLSRREFSYLL--TIKRYNDSGEGAKINRIAKDLKIA-PSSVFEEVS-HLEEKGLVKKK 64 (139)
T ss_dssp -CCHHHHHHHH--HHHHHHTTTSCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred hcCHHHHHHHH--HHHHHHhcCCCcCHHHHHHHhCCC-hHHHHHHHH-HHHHCCCEEec
Confidence 46666655454 344555667789999999999997 777777666 77778998753
No 86
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=46.27 E-value=63 Score=25.01 Aligned_cols=95 Identities=13% Similarity=0.116 Sum_probs=52.4
Q ss_pred cChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE-EecCCCCEEEEEeecCCCCCCCcHHHH----------------HH
Q 025856 110 LPYDELMEELDVTNVRELEDFLINECMYTGIVRG-KLDQLRRCFEVQFAAGRDLRPGQLGSM----------------IQ 172 (247)
Q Consensus 110 Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~G-kIDQ~~~~v~V~~~~~Rdl~~~q~~~l----------------~~ 172 (247)
++..++++.+||+ .+.|-.|-= .|+|.. .-+..+ .|.++.+++..+ ..
T Consensus 3 ~~I~e~A~~~gvs-~~tLR~Ye~-----~GLl~p~~r~~~g---------~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~ 67 (142)
T 3gp4_A 3 LNIKEASEKSGVS-ADTIRYYER-----IGLIPPIHRNESG---------VRKFGAEDLRWILFTRQMRRAGLSIEALID 67 (142)
T ss_dssp BCHHHHHHHHTSC-HHHHHHHHH-----HTSSCCCCBCTTS---------CBCBCHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred CcHHHHHHHHCcC-HHHHHHHHH-----CCCCCCCcCCCCC---------CeeeCHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 5788999999998 888887732 377765 334322 345555543321 22
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 025856 173 TLSNWL---TTSDNLLISIQEKIKWADSMNEMDKKHRKDLEEKVEEAKKS 219 (247)
Q Consensus 173 ~L~~W~---~~~~~vl~~Ie~~i~~a~~~~~~~~~~~~~~~~~~~~~k~~ 219 (247)
-|..+. ..+......+++++.......++-....+.++..++..+..
T Consensus 68 ~l~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~ 117 (142)
T 3gp4_A 68 YLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTH 117 (142)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222111 13444455555566666555555555555555555554443
No 87
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=46.01 E-value=45 Score=24.25 Aligned_cols=44 Identities=9% Similarity=0.023 Sum_probs=36.2
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEE
Q 025856 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (247)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~ 153 (247)
..++..+|++.++++ ...|-..|= .....|+|.-.-|..++...
T Consensus 51 ~~~t~~ela~~l~~~-~~tvs~~l~-~L~~~glv~r~~~~~d~R~~ 94 (140)
T 2nnn_A 51 GPCPQNQLGRLTAMD-AATIKGVVE-RLDKRGLIQRSADPDDGRRL 94 (140)
T ss_dssp SSBCHHHHHHHTTCC-HHHHHHHHH-HHHHTTCEEEEEETTEEEEE
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeeCCCCCCCee
Confidence 479999999999997 888887766 88899999988777655543
No 88
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=45.52 E-value=55 Score=23.05 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=31.1
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCC
Q 025856 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQL 148 (247)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~ 148 (247)
+..++.+|++.++++ ...|=.-+= .....|+|..+-+..
T Consensus 35 ~~~~~~ela~~l~is-~~tvs~~L~-~L~~~Glv~~~~~g~ 73 (102)
T 3pqk_A 35 GEFSVGELEQQIGIG-QPTLSQQLG-VLRESGIVETRRNIK 73 (102)
T ss_dssp CCBCHHHHHHHHTCC-TTHHHHHHH-HHHHTTSEEEECSSS
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEeCC
Confidence 458999999999998 677766666 677889999876554
No 89
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=45.26 E-value=56 Score=24.05 Aligned_cols=44 Identities=16% Similarity=0.080 Sum_probs=32.3
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEE
Q 025856 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCF 152 (247)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v 152 (247)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++..
T Consensus 48 ~~~~~~~~la~~l~i~-~~~vs~~l~-~Le~~glv~r~~~~~d~R~ 91 (147)
T 2hr3_A 48 GGDVTPSELAAAERMR-SSNLAALLR-ELERGGLIVRHADPQDGRR 91 (147)
T ss_dssp TSCBCHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEEC------C
T ss_pred CCCCCHHHHHHHhCCC-hhhHHHHHH-HHHHCCCEeeCCCCCCCCc
Confidence 5679999999999997 788877766 8888999998877654443
No 90
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=45.19 E-value=30 Score=24.27 Aligned_cols=45 Identities=13% Similarity=0.187 Sum_probs=32.8
Q ss_pred HHHHhhhc-ccCCcccChHHHHHHcCCCChHH-HHHHHHHHhHhcCccE
Q 025856 96 KQLTVLTL-AETNKVLPYDELMEELDVTNVRE-LEDFLINECMYTGIVR 142 (247)
Q Consensus 96 r~LtllsL-a~~~k~Isy~~I~~~L~I~~~~e-vE~llI~~aI~~glI~ 142 (247)
|.+.++.+ ...+..++..+|++.++++ ... |=..|= .....|+|.
T Consensus 16 ~~l~~L~~l~~~~~~~t~~eLa~~l~is-~~t~vs~~l~-~Le~~Glv~ 62 (95)
T 2pg4_A 16 RILPTLLEFEKKGYEPSLAEIVKASGVS-EKTFFMGLKD-RLIRAGLVK 62 (95)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHCCC-HHHHHTTHHH-HHHHTTSEE
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHCCC-chHHHHHHHH-HHHHCCCee
Confidence 44444433 3444479999999999997 677 766665 788899998
No 91
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=45.18 E-value=75 Score=23.67 Aligned_cols=44 Identities=11% Similarity=0.066 Sum_probs=31.8
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025856 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (247)
Q Consensus 106 ~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~ 151 (247)
....++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 54 ~~~~~t~~ela~~l~i~-~~tvs~~l~-~Le~~Glv~r~~~~~d~R 97 (155)
T 3cdh_A 54 DNDAMMITRLAKLSLME-QSRMTRIVD-QMDARGLVTRVADAKDKR 97 (155)
T ss_dssp SCSCBCHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEECC------
T ss_pred HCCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeccCCCcCC
Confidence 34579999999999997 788877766 888899999776654443
No 92
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=44.65 E-value=20 Score=27.13 Aligned_cols=46 Identities=17% Similarity=0.165 Sum_probs=30.5
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEE
Q 025856 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCF 152 (247)
Q Consensus 105 ~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v 152 (247)
..+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++..
T Consensus 58 ~~~~~~~~~ela~~l~i~-~~tvs~~l~-~Le~~Gli~r~~~~~d~R~ 103 (160)
T 3boq_A 58 RNPDGLSMGKLSGALKVT-NGNVSGLVN-RLIKDGMVVKAMSADDRRS 103 (160)
T ss_dssp HCTTCEEHHHHHHHCSSC-CSCHHHHHH-HHHHHTSEEEC--------
T ss_pred HcCCCCCHHHHHHHHCCC-hhhHHHHHH-HHHHCCCEEeecCCCCCCe
Confidence 344579999999999997 666666655 7888899998776654443
No 93
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=44.44 E-value=28 Score=26.35 Aligned_cols=43 Identities=9% Similarity=0.047 Sum_probs=29.9
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025856 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (247)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~ 151 (247)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 61 ~~~~t~~ela~~l~is-~~tvs~~l~-~Le~~glv~r~~~~~d~R 103 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMD-KVAVSRAVA-RLLERGFIRRETHGDDRR 103 (162)
T ss_dssp STTCCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEC--------
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEeeecCCCCCC
Confidence 4579999999999997 778877666 888899998776654443
No 94
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=44.25 E-value=28 Score=25.86 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=30.1
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEec
Q 025856 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLD 146 (247)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkID 146 (247)
.+.+++.+|++.++++ ...|-..+= .....|+|...=+
T Consensus 54 ~~~~s~~eLa~~l~is-~stvs~~L~-~L~~~Glv~~~~~ 91 (122)
T 1u2w_A 54 DEELCVCDIANILGVT-IANASHHLR-TLYKQGVVNFRKE 91 (122)
T ss_dssp SSCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEC--
T ss_pred CCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEE
Confidence 4568999999999997 888887766 7778999987533
No 95
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=44.14 E-value=18 Score=32.88 Aligned_cols=71 Identities=14% Similarity=0.126 Sum_probs=39.3
Q ss_pred cCChhhHhhhhCCCC-C-cchHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE
Q 025856 71 HGTWSDYKNNAGHLP-Q-LVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (247)
Q Consensus 71 ~Gt~~dy~~~~~~l~-~-L~~~~~~KLr~LtllsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~G 143 (247)
-|||.-|-+++.... . -+...++..-...|+.+...+..+|..+|++.++++ ...|-.++= +.+..|+|..
T Consensus 13 ~~~~~~~~~~~~m~~~~~~~~~~~r~~n~~~il~~l~~~~~~sr~ela~~~gls-~~tv~~~v~-~L~~~gli~~ 85 (429)
T 1z05_A 13 LGTENLYFQSNAMYMAQPGHIDHIKQINAGRVYKLIDQKGPISRIDLSKESELA-PASITKITR-ELIDAHLIHE 85 (429)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHCSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEE
T ss_pred cCccceeeehhhhhcccCCCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEe
Confidence 466666666543221 1 122233444444566666667789999999999997 888887766 8888999875
No 96
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=43.96 E-value=44 Score=26.77 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=35.5
Q ss_pred HHHHHHHHhhhccc-CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCc-cEE
Q 025856 92 VLKLKQLTVLTLAE-TNKVLPYDELMEELDVTNVRELEDFLINECMYTGI-VRG 143 (247)
Q Consensus 92 ~~KLr~LtllsLa~-~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~gl-I~G 143 (247)
...-|...|+.+.. ..+.++..+|++.++++ .+.|-.-|- ..-..|+ |.+
T Consensus 18 ~~~~R~~~Il~~L~~~~~~~s~~eLa~~l~vS-~~Ti~rdi~-~L~~~G~~I~~ 69 (187)
T 1j5y_A 18 VRQERLKSIVRILERSKEPVSGAQLAEELSVS-RQVIVQDIA-YLRSLGYNIVA 69 (187)
T ss_dssp HHHHHHHHHHHHHHHCSSCBCHHHHHHHHTSC-HHHHHHHHH-HHHHHTCCCEE
T ss_pred hHHHHHHHHHHHHHHcCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEE
Confidence 34556667777655 45679999999999997 777765544 4445687 765
No 97
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=43.75 E-value=73 Score=22.12 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=34.3
Q ss_pred CcccChHHH----HHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEE
Q 025856 107 NKVLPYDEL----MEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (247)
Q Consensus 107 ~k~Isy~~I----~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~ 153 (247)
...++..+| ++.++++ ...|=..|= .....|+|.-.-|.....+.
T Consensus 20 ~~~~~~~el~~~la~~l~is-~~tvs~~l~-~Le~~gli~r~~~~r~~~~~ 68 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMS-TATFYDAKK-FLIQEGFVKERQERGEKRLY 68 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEE
T ss_pred cCCcCHHHHHHHHHHHcCCC-HHHHHHHHH-HHHHCCCEEEEecCCceEEE
Confidence 466899999 8999997 777777665 77778999988887433333
No 98
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=42.59 E-value=38 Score=24.28 Aligned_cols=37 Identities=11% Similarity=0.119 Sum_probs=30.5
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEec
Q 025856 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLD 146 (247)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkID 146 (247)
+.+++.+|++.++++ ...|-..+= .....|+|..+=+
T Consensus 38 ~~~~~~ela~~l~is-~stvs~~L~-~L~~~Glv~~~~~ 74 (106)
T 1r1u_A 38 SEASVGHISHQLNLS-QSNVSHQLK-LLKSVHLVKAKRQ 74 (106)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEe
Confidence 458999999999997 788877766 7778899987654
No 99
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=40.12 E-value=59 Score=24.92 Aligned_cols=44 Identities=9% Similarity=-0.053 Sum_probs=35.4
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEE
Q 025856 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (247)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~ 153 (247)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++...
T Consensus 58 ~~~t~~eLa~~l~is-~~tvs~~l~-~Le~~GlV~r~~~~~DrR~~ 101 (168)
T 2nyx_A 58 GPINLATLATLLGVQ-PSATGRMVD-RLVGAELIDRLPHPTSRREL 101 (168)
T ss_dssp CSEEHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEECSSCSSCE
T ss_pred CCCCHHHHHHHhCCC-HHHHHHHHH-HHHHCCCEEeccCCCCCCee
Confidence 469999999999997 777777665 88889999988887655443
No 100
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=39.56 E-value=1.2e+02 Score=22.93 Aligned_cols=49 Identities=8% Similarity=-0.015 Sum_probs=36.4
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEee
Q 025856 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (247)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~V~~~ 157 (247)
+..++..+|++.++++ ...|=.+|= .....|+|.-.-|..++....-..
T Consensus 60 ~~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~DrR~~~l~L 108 (168)
T 3u2r_A 60 PEGMATLQIADRLISR-APDITRLID-RLDDRGLVLRTRKPENRRVVEVAL 108 (168)
T ss_dssp TSCEEHHHHHHHC----CTHHHHHHH-HHHHTTSEEEEEETTEEEEEEEEE
T ss_pred CCCcCHHHHHHHHCCC-hhhHHHHHH-HHHHCCCEeecCCCCCCCeeEeEE
Confidence 4689999999999997 677776665 888899999999887776554443
No 101
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=37.42 E-value=1.6e+02 Score=23.70 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=30.3
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 025856 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (247)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~Gk 144 (247)
..+++.+|++.++++ ...|-..+= .....|+|.+.
T Consensus 32 ~~~s~~eLA~~lglS-~stv~~~l~-~Le~~GlI~~~ 66 (192)
T 1uly_A 32 KEMTISQLSEILGKT-PQTIYHHIE-KLKEAGLVEVK 66 (192)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEE
Confidence 569999999999997 788877766 78889999987
No 102
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=37.00 E-value=83 Score=22.76 Aligned_cols=44 Identities=18% Similarity=0.089 Sum_probs=35.8
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEE
Q 025856 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (247)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~ 153 (247)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++...
T Consensus 47 ~~~~~~~la~~l~~~-~~tvs~~l~-~L~~~gli~r~~~~~d~R~~ 90 (138)
T 1jgs_A 47 ACITPVELKKVLSVD-LGALTRMLD-RLVCKGWVERLPNPNDKRGV 90 (138)
T ss_dssp SSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECTTCSSCE
T ss_pred CCCCHHHHHHHHCCC-hHHHHHHHH-HHHHCCCEEecCCcccCcee
Confidence 468999999999997 788877666 88899999988887665543
No 103
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=36.99 E-value=31 Score=25.53 Aligned_cols=41 Identities=17% Similarity=0.211 Sum_probs=33.5
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCC
Q 025856 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRR 150 (247)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~ 150 (247)
..++..+|++.++++ ...|-..|= .....|+|.-.-|..++
T Consensus 53 ~~~~~~~la~~l~~~-~~tvs~~l~-~L~~~glv~r~~~~~d~ 93 (147)
T 1z91_A 53 ETLTVKKMGEQLYLD-SGTLTPMLK-RMEQQGLITRKRSEEDE 93 (147)
T ss_dssp SEEEHHHHHHTTTCC-HHHHHHHHH-HHHHHTSEECCBCSSCT
T ss_pred CCCCHHHHHHHHCCC-cCcHHHHHH-HHHHCCCEEeccCCCCC
Confidence 478999999999997 888887766 88889999987765433
No 104
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=36.81 E-value=77 Score=23.54 Aligned_cols=43 Identities=16% Similarity=0.104 Sum_probs=31.6
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025856 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (247)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~ 151 (247)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 59 ~~~~t~~ela~~l~~s-~~tvs~~l~-~Le~~glv~r~~~~~d~R 101 (153)
T 2pex_A 59 TDERSVSEIGERLYLD-SATLTPLLK-RLQAAGLVTRTRAASDER 101 (153)
T ss_dssp SCSEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEC------
T ss_pred CCCcCHHHHHHHhCCC-cccHHHHHH-HHHHCCCEeecCCcccCC
Confidence 3568999999999997 788877766 888999999877654443
No 105
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=36.27 E-value=23 Score=27.06 Aligned_cols=42 Identities=7% Similarity=-0.014 Sum_probs=32.4
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025856 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (247)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~ 151 (247)
..++..+|++.++++ ...|=..|= .....|+|.-+-|..+++
T Consensus 66 ~~~t~~eLa~~l~~~-~~~vs~~l~-~Le~~Glv~r~~~~~DrR 107 (161)
T 3e6m_A 66 GELTVGQLATLGVME-QSTTSRTVD-QLVDEGLAARSISDADQR 107 (161)
T ss_dssp SEEEHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEECC---CCC
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeeCCcccCC
Confidence 479999999999997 777777666 888899999887765554
No 106
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=36.25 E-value=52 Score=23.94 Aligned_cols=42 Identities=17% Similarity=0.060 Sum_probs=34.6
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025856 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (247)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~ 151 (247)
..++..+|++.++++ ...|-..|= .....|+|.-.-+..++.
T Consensus 44 ~~~~~~ela~~l~is-~~~vs~~l~-~L~~~gli~~~~~~~d~r 85 (142)
T 3bdd_A 44 APLHQLALQERLQID-RAAVTRHLK-LLEESGYIIRKRNPDNQR 85 (142)
T ss_dssp CSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECSSSTT
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEecCCCCCCC
Confidence 469999999999997 888887766 888899999888765443
No 107
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=35.70 E-value=85 Score=24.38 Aligned_cols=41 Identities=12% Similarity=0.100 Sum_probs=31.9
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCC
Q 025856 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLR 149 (247)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~ 149 (247)
.+..+..+|++.|+++ ...|=.-|= ....+|+|..+-+...
T Consensus 69 ~~~~t~~eLa~~lgls-~stvs~hL~-~L~~aGlV~~~~~Gr~ 109 (151)
T 3f6v_A 69 SGEQTVNNLAAHFPAS-RSAISQHLR-VLTEAGLVTPRKDGRF 109 (151)
T ss_dssp GCCEEHHHHHTTSSSC-HHHHHHHHH-HHHHTTSEEEEEETTE
T ss_pred hCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEecCCE
Confidence 3568999999999997 777766665 6778999998755443
No 108
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=34.43 E-value=56 Score=24.32 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=31.2
Q ss_pred ccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 025856 104 AETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (247)
Q Consensus 104 a~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~V 154 (247)
......++..+|++.++++ ...|=..|= .....|+|.-.-|..+++...
T Consensus 49 ~~~~~~~t~~eLa~~l~i~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R~~~ 97 (150)
T 3fm5_A 49 CEQAEGVNQRGVAATMGLD-PSQIVGLVD-ELEERGLVVRTLDPSDRRNKL 97 (150)
T ss_dssp HHSTTCCCSHHHHHHHTCC-HHHHHHHHH-HHHTTTSEEC-----------
T ss_pred HhCCCCcCHHHHHHHHCCC-HhHHHHHHH-HHHHCCCEEeeCCccccchhe
Confidence 3444569999999999997 777777766 888999999887776655443
No 109
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=33.94 E-value=1.3e+02 Score=21.65 Aligned_cols=41 Identities=10% Similarity=0.049 Sum_probs=34.1
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025856 109 VLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (247)
Q Consensus 109 ~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~ 151 (247)
.++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 50 ~~~~~ela~~l~~~-~~tvs~~l~-~Le~~Gli~r~~~~~d~R 90 (141)
T 3bro_A 50 EVLQRDLESEFSIK-SSTATVLLQ-RMEIKKLLYRKVSGKDSR 90 (141)
T ss_dssp CCBHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECSSCTT
T ss_pred CcCHHHHHHHHCCC-cchHHHHHH-HHHHCCCEEeeCCCcCCC
Confidence 79999999999997 788877766 888899999887765543
No 110
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=32.67 E-value=47 Score=21.73 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=23.7
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhH
Q 025856 107 NKVLPYDELMEELDVTNVRELEDFLINECM 136 (247)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~aI 136 (247)
....||.+|++.++++ ...|...+- .|+
T Consensus 23 ~~g~s~~eIA~~lgis-~~tV~~~~~-ra~ 50 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVT-RERIRQIEA-KAL 50 (68)
T ss_dssp SSCCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred CCCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 3579999999999998 889988776 665
No 111
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=31.43 E-value=66 Score=22.45 Aligned_cols=35 Identities=17% Similarity=0.120 Sum_probs=29.0
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 025856 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (247)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~Gk 144 (247)
..+++.+|++.++++ ...|-..|= .....|+|.-.
T Consensus 42 ~~~~~~eLa~~l~is-~~tv~~~L~-~L~~~Glv~~~ 76 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLS-KKQLDYHLK-VLEAGFCIERV 76 (96)
T ss_dssp TTCCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEE
Confidence 558999999999997 777877666 77888999854
No 112
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=30.91 E-value=39 Score=19.70 Aligned_cols=22 Identities=9% Similarity=0.227 Sum_probs=18.9
Q ss_pred cChHHHHHHcCCCChHHHHHHHH
Q 025856 110 LPYDELMEELDVTNVRELEDFLI 132 (247)
Q Consensus 110 Isy~~I~~~L~I~~~~evE~llI 132 (247)
+++.+|++.++|+ ...|..|+=
T Consensus 22 ~s~~~IA~~lgis-~~Tv~~~~~ 43 (51)
T 1tc3_C 22 VSLHEMSRKISRS-RHCIRVYLK 43 (51)
T ss_dssp CCHHHHHHHHTCC-HHHHHHHHH
T ss_pred CCHHHHHHHHCcC-HHHHHHHHh
Confidence 6899999999997 888887754
No 113
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=30.71 E-value=1.5e+02 Score=21.39 Aligned_cols=46 Identities=15% Similarity=0.022 Sum_probs=37.1
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 025856 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (247)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~V 154 (247)
+..++..+|++.++++ ...|-..|= .....|+|.-.-|..++....
T Consensus 45 ~~~~~~~~la~~l~~s-~~tvs~~l~-~L~~~glv~r~~~~~d~r~~~ 90 (145)
T 2a61_A 45 EGPKRPGELSVLLGVA-KSTVTGLVK-RLEADGYLTRTPDPADRRAYF 90 (145)
T ss_dssp HCCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEE
T ss_pred cCCCCHHHHHHHHCCC-chhHHHHHH-HHHHCCCeeecCCCCCCceEE
Confidence 3469999999999997 788877666 888899999988876665443
No 114
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=30.68 E-value=53 Score=21.81 Aligned_cols=28 Identities=11% Similarity=0.146 Sum_probs=23.0
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhH
Q 025856 107 NKVLPYDELMEELDVTNVRELEDFLINECM 136 (247)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~aI 136 (247)
....||.+|++.++++ ...|...+- .|+
T Consensus 28 ~~~~s~~eIA~~l~is-~~tV~~~~~-ra~ 55 (73)
T 1ku3_A 28 GREHTLEEVGAYFGVT-RERIRQIEN-KAL 55 (73)
T ss_dssp SSCCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHH
Confidence 3568999999999997 888888766 554
No 115
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=30.36 E-value=39 Score=25.00 Aligned_cols=44 Identities=11% Similarity=-0.012 Sum_probs=26.7
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEE
Q 025856 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (247)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~ 153 (247)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++...
T Consensus 50 ~~~t~~eLa~~l~~~-~~tvs~~l~-~L~~~Glv~r~~~~~DrR~~ 93 (142)
T 3ech_A 50 RGLNLQDLGRQMCRD-KALITRKIR-ELEGRNLVRRERNPSDQRSF 93 (142)
T ss_dssp TTCCHHHHHHHHC----CHHHHHHH-HHHHTTSEEC----------
T ss_pred CCcCHHHHHHHhCCC-HHHHHHHHH-HHHHCCCEeeccCCCCCCee
Confidence 469999999999997 777777666 88889999988887665543
No 116
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=30.24 E-value=2.4e+02 Score=23.55 Aligned_cols=108 Identities=10% Similarity=0.075 Sum_probs=64.1
Q ss_pred cHHHHHHHHHHHhcCCCcccch---hhhcCchhhhccCCCchHHHHHHHHHhcCChhhHhhhhCCCCCcc---hHHHHHH
Q 025856 22 KGAALGSVIVEATSQPSLFAFS---EILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKNNAGHLPQLV---PDQVLKL 95 (247)
Q Consensus 22 ~~~~a~~lI~~AL~~p~vf~F~---eLL~lp~v~~L~~~~~~~~~~LL~iFa~Gt~~dy~~~~~~l~~L~---~~~~~KL 95 (247)
+..........+|..-..=.|. +|+. |.++ .+.+-...+.|=+.+-.|+|..|.+....-+++. +.-...+
T Consensus 62 ~~~ii~~iLlk~L~~~p~~DF~~~l~LIp-~~~~--~~~~I~~i~~L~~~L~~~~y~~fW~~l~~~~~l~~~i~gf~dsI 138 (226)
T 1rz4_A 62 QTTVTAQILLKALTNLPHTDFTLCKCMID-QAHQ--EERPIRQILYLGDLLETCHFQAFWQALDENMDLLEGITGFEDSV 138 (226)
T ss_dssp CHHHHHHHHHHHHHTTTSTHHHHHHHTSC-HHHH--TSTTHHHHHHHHHHHHTTCHHHHHHHSCTTCHHHHTSTTHHHHH
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHhCC-hhhh--cCHHHHHHHHHHHHHHcCCHHHHHHHHhcChhHHHHHhHHHHHH
Confidence 4444445554555332233344 3331 2221 2334567788889999999998876332223222 2223445
Q ss_pred HHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHH
Q 025856 96 KQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLI 132 (247)
Q Consensus 96 r~LtllsLa~~~k~Isy~~I~~~L~I~~~~evE~llI 132 (247)
|.=..-.+...+..||.+.+++-|+..+..+++.|+-
T Consensus 139 R~~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi~ 175 (226)
T 1rz4_A 139 RKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMS 175 (226)
T ss_dssp HHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHHH
Confidence 5543444455789999999999996435899999987
No 117
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=29.70 E-value=2e+02 Score=22.43 Aligned_cols=65 Identities=6% Similarity=0.064 Sum_probs=46.4
Q ss_pred CcchHHHHHHHHHHhhhccc-CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEee
Q 025856 86 QLVPDQVLKLKQLTVLTLAE-TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (247)
Q Consensus 86 ~L~~~~~~KLr~LtllsLa~-~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~V~~~ 157 (247)
.|++.+..-|. .|.. +...++..+|++.++++ ...|=..|= .....|+|.-.-|..++....-+.
T Consensus 38 ~lt~~q~~vL~-----~L~~~~~~~~t~~eLa~~l~is-~~tvs~~l~-~Le~~GlV~r~~~~~DrR~~~l~L 103 (189)
T 3nqo_A 38 ILTSRQYMTIL-----SILHLPEEETTLNNIARKMGTS-KQNINRLVA-NLEKNGYVDVIPSPHDKRAINVKV 103 (189)
T ss_dssp SSCHHHHHHHH-----HHHHSCGGGCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEECSSCSSCEEEEE
T ss_pred cCCHHHHHHHH-----HHHhccCCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeccCCCCCCeeEEEE
Confidence 37766633222 2232 35689999999999997 777877666 888999999999887766544433
No 118
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=29.17 E-value=1.1e+02 Score=21.48 Aligned_cols=27 Identities=4% Similarity=0.266 Sum_probs=21.9
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhH
Q 025856 108 KVLPYDELMEELDVTNVRELEDFLINECM 136 (247)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~aI 136 (247)
.-.+|.+|++.|+++ ...|...+- .+.
T Consensus 41 ~g~s~~eIA~~l~is-~~tV~~~l~-r~~ 67 (95)
T 3c57_A 41 EGLTNKQIADRMFLA-EKTVKNYVS-RLL 67 (95)
T ss_dssp TTCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 447999999999997 899988766 543
No 119
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=28.94 E-value=42 Score=24.11 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=30.9
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 025856 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (247)
Q Consensus 105 ~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~Gk 144 (247)
.++..++-.+|++.++++ ...|=..+- .....|+|...
T Consensus 29 ~~g~~~s~~eLa~~lgvs-~~tV~~~L~-~L~~~GlV~~~ 66 (110)
T 1q1h_A 29 DKGTEMTDEEIANQLNIK-VNDVRKKLN-LLEEQGFVSYR 66 (110)
T ss_dssp HHCSCBCHHHHHHTTTSC-HHHHHHHHH-HHHHHTSCEEE
T ss_pred HcCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEE
Confidence 345458999999999997 788877777 78889999865
No 120
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=28.76 E-value=86 Score=22.93 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=30.8
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecC
Q 025856 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (247)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ 147 (247)
+..++.+|++.++++ ...|-..+= .....|+|..+-+.
T Consensus 33 ~~~~~~eLa~~lgis-~stvs~~L~-~L~~~GlV~~~~~g 70 (118)
T 2jsc_A 33 GVCYPGQLAAHLGLT-RSNVSNHLS-CLRGCGLVVATYEG 70 (118)
T ss_dssp TCCSTTTHHHHHSSC-HHHHHHHHH-HHTTTTSEEEEECS
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCceEEEEEC
Confidence 357899999999997 788887766 77889999876553
No 121
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=28.39 E-value=35 Score=23.42 Aligned_cols=39 Identities=13% Similarity=0.270 Sum_probs=26.8
Q ss_pred hhhcccCCcccChHHHHHHcCC----CChHHHHHHHHHHhHhcC
Q 025856 100 VLTLAETNKVLPYDELMEELDV----TNVRELEDFLINECMYTG 139 (247)
Q Consensus 100 llsLa~~~k~Isy~~I~~~L~I----~~~~evE~llI~~aI~~g 139 (247)
|+..+...+.++|++|...|.- -+.+++|+++- ..-..|
T Consensus 14 Li~~gK~~G~lTy~EI~d~l~~~~~~ld~e~id~i~~-~L~~~g 56 (72)
T 2k6x_A 14 LISLGKKKGYITYEDIDKAFPPDFEGFDTNLIERIHE-ELEKHG 56 (72)
T ss_dssp HHHHHHHHSSCBHHHHHHHCSCSCSSCCHHHHHHHHH-HHHHTC
T ss_pred HHHHHhHcCCccHHHHHHhCccccccCCHHHHHHHHH-HHHHCC
Confidence 5556666678999999999852 24788888754 433344
No 122
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=28.06 E-value=1.2e+02 Score=22.29 Aligned_cols=39 Identities=26% Similarity=0.344 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCccccc
Q 025856 188 IQEKIKWADSMNEMDKKHRKDLEEKVEEAKKSLSHKKLH 226 (247)
Q Consensus 188 Ie~~i~~a~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 226 (247)
++........+.+.+.++-.+++.+++++=+.+.++.|.
T Consensus 30 L~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~~EklA 68 (101)
T 1d7m_A 30 LNSLLASLESEGAEREKRLRELEAKLDETLKNLELEKLA 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 344445555666778888888888988888888776653
No 123
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=27.90 E-value=1.1e+02 Score=21.14 Aligned_cols=48 Identities=4% Similarity=-0.004 Sum_probs=33.7
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 025856 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (247)
Q Consensus 106 ~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~V~ 155 (247)
++..++..+|++.++++ ...|=.+|= .....|+|.-.-|.....+.++
T Consensus 27 ~~~~~t~~eLa~~l~i~-~~tvs~~l~-~Le~~Glv~~~~d~R~~~v~LT 74 (95)
T 2qvo_A 27 GGNDVYIQYIASKVNSP-HSYVWLIIK-KFEEAKMVECELEGRTKIIRLT 74 (95)
T ss_dssp TTCCEEHHHHHHHSSSC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEEC
T ss_pred CCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCcCccCCCCCCeEEEEEC
Confidence 34459999999999997 777777665 7888999944444333344443
No 124
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=27.90 E-value=1.6e+02 Score=21.36 Aligned_cols=44 Identities=18% Similarity=0.052 Sum_probs=35.4
Q ss_pred ChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEe
Q 025856 111 PYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQF 156 (247)
Q Consensus 111 sy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~V~~ 156 (247)
+..+|++.++++ ...+=..|= .....|+|.-.-|..++....-.
T Consensus 52 ~~~~la~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R~~~~~ 95 (144)
T 3f3x_A 52 SMVYLANRYFVT-QSAITAAVD-KLEAKGLVRRIRDSKDRRIVIVE 95 (144)
T ss_dssp EHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEEEE
T ss_pred CHHHHHHHHCCC-hhHHHHHHH-HHHHCCCEEeccCCCCCceEEEE
Confidence 999999999997 777776665 88889999999888766644433
No 125
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=27.76 E-value=61 Score=27.42 Aligned_cols=45 Identities=18% Similarity=0.122 Sum_probs=36.7
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 025856 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (247)
Q Consensus 106 ~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~V~ 155 (247)
.+...+..+|++.++++ ..+|+.-+- +....|+|+ -..+++|.+.
T Consensus 175 ~~~~~t~~~la~~~~l~-~~~V~~~l~-~L~~~~~v~---~~~~~~~~~~ 219 (232)
T 2qlz_A 175 LNGRATVEELSDRLNLK-EREVREKIS-EMARFVPVK---IINDNTVVLD 219 (232)
T ss_dssp HSSEEEHHHHHHHHTCC-HHHHHHHHH-HHTTTSCEE---EETTTEEEEC
T ss_pred hcCCCCHHHHHHHhCcC-HHHHHHHHH-HHHhcCCeE---EecCCeEEec
Confidence 35789999999999998 999998888 999999998 3345556554
No 126
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=27.72 E-value=50 Score=23.02 Aligned_cols=27 Identities=7% Similarity=0.121 Sum_probs=22.3
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhH
Q 025856 108 KVLPYDELMEELDVTNVRELEDFLINECM 136 (247)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~aI 136 (247)
.-.+|.+|++.|+++ ...|...+- .|+
T Consensus 52 ~g~s~~eIA~~lgis-~~tV~~~l~-ra~ 78 (92)
T 3hug_A 52 RGWSTAQIATDLGIA-EGTVKSRLH-YAV 78 (92)
T ss_dssp SCCCHHHHHHHHTSC-HHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 447999999999997 888888776 654
No 127
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=27.44 E-value=63 Score=22.34 Aligned_cols=29 Identities=14% Similarity=0.257 Sum_probs=24.2
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhH
Q 025856 106 TNKVLPYDELMEELDVTNVRELEDFLINECM 136 (247)
Q Consensus 106 ~~k~Isy~~I~~~L~I~~~~evE~llI~~aI 136 (247)
.+...||.+|++.++++ ...|...+- .|+
T Consensus 35 ~~~~~s~~EIA~~lgis-~~tV~~~~~-ra~ 63 (87)
T 1tty_A 35 DGKPKTLEEVGQYFNVT-RERIRQIEV-KAL 63 (87)
T ss_dssp TSSCCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred CCCCCCHHHHHHHHCCC-HHHHHHHHH-HHH
Confidence 34579999999999998 888888877 665
No 128
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=26.91 E-value=1.1e+02 Score=22.72 Aligned_cols=35 Identities=14% Similarity=0.062 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 025856 168 GSMIQTLSNWLTTSDNLLISIQEKIKWADSMNEMD 202 (247)
Q Consensus 168 ~~l~~~L~~W~~~~~~vl~~Ie~~i~~a~~~~~~~ 202 (247)
.+|......||..++.+...++..|+.+++....-
T Consensus 32 qELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~L 66 (96)
T 1t3j_A 32 QEMATTFARLCQQVDMTQKHLEEEIARLSKEIDQL 66 (96)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888999999999999999999999988775443
No 129
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=26.89 E-value=84 Score=22.93 Aligned_cols=43 Identities=7% Similarity=0.178 Sum_probs=34.2
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025856 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (247)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~ 151 (247)
...++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 49 ~~~~~~~ela~~l~~~-~~tvs~~l~-~L~~~gli~r~~~~~d~R 91 (142)
T 2bv6_A 49 ESPVNVKKVVTELALD-TGTVSPLLK-RMEQVDLIKRERSEVDQR 91 (142)
T ss_dssp SSEEEHHHHHHHTTCC-TTTHHHHHH-HHHHTTSEEEEECSSSTT
T ss_pred cCCcCHHHHHHHHCCC-hhhHHHHHH-HHHHCCCEEeecCCCCcc
Confidence 3469999999999997 777777666 888899999887765444
No 130
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=26.85 E-value=88 Score=24.04 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=26.2
Q ss_pred HHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcC
Q 025856 98 LTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTG 139 (247)
Q Consensus 98 LtllsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~g 139 (247)
+-|+.+...+ .||.+|++.++++ ..-|.. +- +++..|
T Consensus 66 ~eV~klL~~G--~syreIA~~~g~S-~aTIsR-v~-r~L~~g 102 (119)
T 3kor_A 66 LQVAKMIKQG--YTYATIEQESGAS-TATISR-VK-RSLQWG 102 (119)
T ss_dssp HHHHHHHHHT--CCHHHHHHHHCCC-HHHHHH-HH-HHHHSS
T ss_pred HHHHHHHHcC--CCHHHHHHHHCCC-HHHHHH-HH-HHHhcC
Confidence 4555554443 9999999999997 888876 44 565443
No 131
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=26.03 E-value=28 Score=25.03 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHhHhcCccEEEecC
Q 025856 124 VRELEDFLINECMYTGIVRGKLDQ 147 (247)
Q Consensus 124 ~~evE~llI~~aI~~glI~GkIDQ 147 (247)
.+.||+.|| .....|-|.|+||.
T Consensus 36 A~~VE~~Li-~lAq~Gqi~~ki~e 58 (80)
T 1eij_A 36 VEQIELQLI-QLAQMGRVRSKITD 58 (80)
T ss_dssp HHHHHHHHH-HHHHCCSSCCCCCH
T ss_pred HHHHHHHHH-HHHHcCCCCCCcCH
Confidence 367999999 88999999998874
No 132
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=25.72 E-value=62 Score=23.58 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=24.0
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhH
Q 025856 107 NKVLPYDELMEELDVTNVRELEDFLINECM 136 (247)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~aI 136 (247)
....||.+|++.++++ ..-|...+- .|+
T Consensus 37 ~e~~s~~EIA~~lgiS-~~tVr~~~~-rAl 64 (99)
T 3t72_q 37 NTDYTLEEVGKQFDVT-RERIRQIEA-KAL 64 (99)
T ss_pred CCCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 4679999999999997 888888877 775
No 133
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=25.36 E-value=2.9e+02 Score=22.80 Aligned_cols=100 Identities=7% Similarity=0.035 Sum_probs=59.0
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE-EecCCCCE-EEEEee----------cCCCCCCCcHHHHHHHHH
Q 025856 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG-KLDQLRRC-FEVQFA----------AGRDLRPGQLGSMIQTLS 175 (247)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~G-kIDQ~~~~-v~V~~~----------~~Rdl~~~q~~~l~~~L~ 175 (247)
+.++..++++.+||+ .+.|-.| +- .||+.. +.|..++. .+=... ..-.|+.+++..+.+
T Consensus 4 ~~~~i~e~a~~~gvs-~~tlr~y---~~--~gll~p~~~d~~~g~R~y~~~~~~~l~~i~~l~~~g~~l~~i~~~~~--- 74 (278)
T 1r8e_A 4 SYYSIGEVSKLANVS-IKALRYY---DK--IDLFKPAYVDPDTSYRYYTDSQLIHLDLIKSLKYIGTPLEEMKKAQD--- 74 (278)
T ss_dssp CEEEHHHHHHHHTCC-HHHHHHH---HH--TTSSCCSEECTTTCCEEEETGGGGHHHHHHHHHHTTCCHHHHHHHTT---
T ss_pred CcEeHHHHHHHHCcC-HHHHHHH---HH--CCCCCCCccCCCCCccccCHHHHHHHHHHHHHHHCCCCHHHHHHHHH---
Confidence 457889999999998 8888776 22 488864 56444443 221100 111223333333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 025856 176 NWLTTSDNLLISIQEKIKWADSMNEMDKKHRKDLEEKVEEAKKS 219 (247)
Q Consensus 176 ~W~~~~~~vl~~Ie~~i~~a~~~~~~~~~~~~~~~~~~~~~k~~ 219 (247)
.. ...+...++++....+.+.++-.+..+.++..+...+..
T Consensus 75 ~~---~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~ 115 (278)
T 1r8e_A 75 LE---MEELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQ 115 (278)
T ss_dssp SC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 345666777777777777777777777777776665544
No 134
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=25.22 E-value=92 Score=23.05 Aligned_cols=53 Identities=13% Similarity=0.156 Sum_probs=36.2
Q ss_pred chHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 025856 88 VPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (247)
Q Consensus 88 ~~~~~~KLr~LtllsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~Gk 144 (247)
++.+..-|+. |+.+...+..++..+|++.++++ ...|=..|= .....|+|.-.
T Consensus 3 s~~~~~~L~~--i~~l~~~~~~~~~~ela~~l~vs-~~tvs~~l~-~Le~~Glv~r~ 55 (142)
T 1on2_A 3 TPSMEMYIEQ--IYMLIEEKGYARVSDIAEALAVH-PSSVTKMVQ-KLDKDEYLIYE 55 (142)
T ss_dssp CHHHHHHHHH--HHHHHHHHSSCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred ChHHHHHHHH--HHHHHhhcCCCCHHHHHHHhCCC-HHHHHHHHH-HHHHCCCEEEe
Confidence 3444344443 33343444569999999999998 777777666 77888999765
No 135
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=25.04 E-value=91 Score=26.39 Aligned_cols=45 Identities=27% Similarity=0.223 Sum_probs=35.3
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 025856 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (247)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~V~ 155 (247)
+..++..+|++.++++ ...+-..+= .....|+|... ...+.+.++
T Consensus 164 ~~~~s~~eLA~~lgls-ksTv~r~L~-~Le~~GlV~r~--~r~~~~~LT 208 (244)
T 2wte_A 164 TKGTGITELAKMLDKS-EKTLINKIA-ELKKFGILTQK--GKDRKVELN 208 (244)
T ss_dssp HTCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE--TTTTEEEEC
T ss_pred cCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEe--CCccEEEEC
Confidence 3469999999999998 888888777 88889999876 344455544
No 136
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=24.67 E-value=78 Score=23.22 Aligned_cols=47 Identities=6% Similarity=-0.007 Sum_probs=36.4
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 025856 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (247)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkIDQ~~~~v~V~ 155 (247)
...++..+|++.++++ ...|=..|= .....|+|.=+-|..+++...-
T Consensus 51 ~~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R~~~i 97 (127)
T 2frh_A 51 EKEYYLKDIINHLNYK-QPQVVKAVK-ILSQEDYFDKKRNEHDERTVLI 97 (127)
T ss_dssp CSEEEHHHHHHHSSSH-HHHHHHHHH-HHHHTTSSCCBCCSSSSCCCEE
T ss_pred CCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEecCCCCCCCeeEE
Confidence 3679999999999997 677776655 7888999998777766554433
No 137
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=24.65 E-value=57 Score=24.27 Aligned_cols=42 Identities=14% Similarity=0.016 Sum_probs=33.0
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE--EecCCCCE
Q 025856 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG--KLDQLRRC 151 (247)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~G--kIDQ~~~~ 151 (247)
..++..+|++.++++ ...|=..|= .....|+|.- .-|..++.
T Consensus 54 ~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~~~d~R 97 (154)
T 2qww_A 54 PGISVADLTKRLIIT-GSSAAANVD-GLISLGLVVKLNKTIPNDSM 97 (154)
T ss_dssp TTEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEESCC--CTTCT
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEecCcCCCCCCc
Confidence 469999999999997 788887766 8899999998 66665544
No 138
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=24.24 E-value=29 Score=25.00 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHhHhcCccEEEecC
Q 025856 124 VRELEDFLINECMYTGIVRGKLDQ 147 (247)
Q Consensus 124 ~~evE~llI~~aI~~glI~GkIDQ 147 (247)
.+.||+.|| .....|-|.||||.
T Consensus 34 A~~VE~~Li-~lAq~Gqi~~ki~e 56 (81)
T 2fh0_A 34 AQAVETYLK-KLIATNNVTHKITE 56 (81)
T ss_dssp HHHHHHHHH-HHHHHTCCSCCBCH
T ss_pred HHHHHHHHH-HHHHcCCCCCCcCH
Confidence 468999999 88899999988875
No 139
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=23.97 E-value=1.7e+02 Score=21.55 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=30.2
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEec
Q 025856 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLD 146 (247)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~aI~~glI~GkID 146 (247)
+..++.+|++.++++ ...|-..+= .....|+|..+-+
T Consensus 58 ~~~s~~ela~~lgis-~stvs~~L~-~Le~~Glv~~~~~ 94 (122)
T 1r1t_A 58 SELCVGDLAQAIGVS-ESAVSHQLR-SLRNLRLVSYRKQ 94 (122)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEe
Confidence 568999999999997 777777665 6777899987654
No 140
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=23.75 E-value=88 Score=22.06 Aligned_cols=40 Identities=28% Similarity=0.393 Sum_probs=26.5
Q ss_pred CCCcchHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHH
Q 025856 84 LPQLVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLI 132 (247)
Q Consensus 84 l~~L~~~~~~KLr~LtllsLa~~~k~Isy~~I~~~L~I~~~~evE~llI 132 (247)
.+.|++.+..=++. .. .-.++.+|++.|+|+ ...|+..+-
T Consensus 27 ~~~Lt~rE~~Vl~l------~~--~G~s~~eIA~~L~iS-~~TV~~~~~ 66 (90)
T 3ulq_B 27 QDVLTPRECLILQE------VE--KGFTNQEIADALHLS-KRSIEYSLT 66 (90)
T ss_dssp --CCCHHHHHHHHH------HH--TTCCHHHHHHHHTCC-HHHHHHHHH
T ss_pred ccCCCHHHHHHHHH------HH--cCCCHHHHHHHHCcC-HHHHHHHHH
Confidence 44577665433332 22 336999999999997 888887765
No 141
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=22.00 E-value=2.6e+02 Score=21.11 Aligned_cols=58 Identities=12% Similarity=0.183 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCccc
Q 025856 167 LGSMIQTLSNWLTTSDNLLISIQEKIKWADSMNEMDKKHRKDLEEKVEEAKKSLSHKK 224 (247)
Q Consensus 167 ~~~l~~~L~~W~~~~~~vl~~Ie~~i~~a~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 224 (247)
...+..+|..=+..+...+..+..++..-......-...+..++..+.++++.+.+..
T Consensus 67 ~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 67 AEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666666666667777778888888888875543
No 142
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=21.96 E-value=1.6e+02 Score=18.62 Aligned_cols=26 Identities=12% Similarity=0.120 Sum_probs=21.3
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhH
Q 025856 109 VLPYDELMEELDVTNVRELEDFLINECM 136 (247)
Q Consensus 109 ~Isy~~I~~~L~I~~~~evE~llI~~aI 136 (247)
-.||.+|++.++++ ...|...+- .|.
T Consensus 31 g~s~~eIA~~lgis-~~tv~~~~~-ra~ 56 (70)
T 2o8x_A 31 GLSYADAAAVCGCP-VGTIRSRVA-RAR 56 (70)
T ss_dssp CCCHHHHHHHHTSC-HHHHHHHHH-HHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 47999999999997 888887765 554
No 143
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=21.77 E-value=65 Score=24.59 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=23.1
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhH
Q 025856 108 KVLPYDELMEELDVTNVRELEDFLINECM 136 (247)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~aI 136 (247)
..+||.+|++.||++ +..|...+- .|.
T Consensus 108 ~g~s~~EIA~~lgis-~~tV~~~l~-rar 134 (157)
T 2lfw_A 108 EGFSPEDAAYLIEVD-TSEVETLVT-EAL 134 (157)
T ss_dssp SCCCHHHHHHTTTSC-HHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 458999999999998 999998877 664
No 144
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=21.61 E-value=1.3e+02 Score=17.95 Aligned_cols=23 Identities=17% Similarity=0.081 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcC
Q 025856 199 NEMDKKHRKDLEEKVEEAKKSLS 221 (247)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~k~~~~ 221 (247)
.++-...+.+++.+|+.+|+-+|
T Consensus 10 vEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 10 LEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHccHHHHHHHHHHHHHhc
Confidence 34445567778888888888764
No 145
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=21.56 E-value=67 Score=22.77 Aligned_cols=32 Identities=13% Similarity=0.011 Sum_probs=26.3
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025856 161 DLRPGQLGSMIQTLSNWLTTSDNLLISIQEKI 192 (247)
Q Consensus 161 dl~~~q~~~l~~~L~~W~~~~~~vl~~Ie~~i 192 (247)
.|+|+.++.+...+..|.....+.....++..
T Consensus 20 vfGpkkLP~l~r~lGk~ir~fK~~~~~~~~e~ 51 (78)
T 2l16_A 20 IFGPSKLPEIGRAAGRTLLEFKSATKSLVSGD 51 (78)
T ss_dssp HSCTTTHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred eeCccHhHHHHHHHHHHHHHHHHHHHHhHhhh
Confidence 47899999999999999998888777666543
No 146
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=21.28 E-value=1.4e+02 Score=17.89 Aligned_cols=23 Identities=17% Similarity=-0.027 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcC
Q 025856 199 NEMDKKHRKDLEEKVEEAKKSLS 221 (247)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~k~~~~ 221 (247)
.++-...+.+++.+|+.+|+-++
T Consensus 10 VEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 10 LEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhhHHHHHHHHHHHHHh
Confidence 34445567778888888887653
No 147
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=20.83 E-value=84 Score=19.66 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=18.0
Q ss_pred ccChHHHHHHcCCCChHHHHHHHH
Q 025856 109 VLPYDELMEELDVTNVRELEDFLI 132 (247)
Q Consensus 109 ~Isy~~I~~~L~I~~~~evE~llI 132 (247)
-.++.+|++.|+++ ...|...+=
T Consensus 13 g~s~~eIA~~l~is-~~tV~~~~~ 35 (61)
T 2jpc_A 13 GYTNHGISEKLHIS-IKTVETHRM 35 (61)
T ss_dssp SCCSHHHHHHTCSC-HHHHHHHHH
T ss_pred CCCHHHHHHHhCCC-HHHHHHHHH
Confidence 36889999999997 777776544
No 148
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=20.13 E-value=1.3e+02 Score=20.46 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=21.0
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHh
Q 025856 108 KVLPYDELMEELDVTNVRELEDFLINEC 135 (247)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~a 135 (247)
.-.+|.+|++.|+++ ...|...+- .+
T Consensus 35 ~g~s~~eIA~~l~is-~~tV~~~l~-r~ 60 (82)
T 1je8_A 35 QGLPNKMIARRLDIT-ESTVKVHVK-HM 60 (82)
T ss_dssp TTCCHHHHHHHHTSC-HHHHHHHHH-HH
T ss_pred cCCCHHHHHHHHCcC-HHHHHHHHH-HH
Confidence 347999999999997 888887765 44
Done!