Query 025857
Match_columns 247
No_of_seqs 130 out of 164
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 10:19:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025857.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025857hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01959 DHQS: 3-dehydroquinat 100.0 3.8E-61 8.1E-66 449.7 19.8 194 51-246 1-208 (354)
2 PRK02290 3-dehydroquinate synt 100.0 1E-60 2.2E-65 445.2 21.2 190 50-246 1-198 (344)
3 COG1465 Predicted alternative 100.0 3.4E-59 7.5E-64 429.5 18.8 196 49-246 1-230 (376)
4 PRK10128 2-keto-3-deoxy-L-rham 94.4 0.19 4.1E-06 46.4 7.9 92 109-203 18-112 (267)
5 TIGR03239 GarL 2-dehydro-3-deo 94.2 0.23 5E-06 45.1 8.0 90 109-203 12-106 (249)
6 PRK10558 alpha-dehydro-beta-de 94.0 0.26 5.6E-06 44.9 8.0 90 109-203 19-113 (256)
7 TIGR02311 HpaI 2,4-dihydroxyhe 94.0 0.27 5.9E-06 44.4 8.0 91 110-204 13-107 (249)
8 cd00452 KDPG_aldolase KDPG and 93.8 0.45 9.7E-06 40.7 8.7 111 59-193 18-128 (190)
9 cd00331 IGPS Indole-3-glycerol 93.0 0.98 2.1E-05 39.0 9.6 112 58-190 82-202 (217)
10 PRK05826 pyruvate kinase; Prov 91.8 0.78 1.7E-05 45.6 8.3 135 58-205 174-335 (465)
11 PRK10558 alpha-dehydro-beta-de 91.5 0.64 1.4E-05 42.4 6.9 51 141-194 130-181 (256)
12 PF03328 HpcH_HpaI: HpcH/HpaI 91.4 1.1 2.4E-05 38.9 8.1 93 111-206 2-109 (221)
13 PTZ00300 pyruvate kinase; Prov 91.2 1.5 3.3E-05 43.5 9.7 136 57-205 147-308 (454)
14 PRK10128 2-keto-3-deoxy-L-rham 90.8 0.9 2E-05 41.9 7.2 131 59-192 79-240 (267)
15 PRK01130 N-acetylmannosamine-6 90.8 6.6 0.00014 34.1 12.2 115 60-188 26-145 (221)
16 TIGR03239 GarL 2-dehydro-3-deo 90.3 0.6 1.3E-05 42.4 5.5 131 58-191 72-232 (249)
17 PF01729 QRPTase_C: Quinolinat 90.2 0.89 1.9E-05 39.2 6.2 43 160-205 81-123 (169)
18 PRK05848 nicotinate-nucleotide 89.6 0.77 1.7E-05 42.6 5.8 53 149-204 169-224 (273)
19 PF02662 FlpD: Methyl-viologen 89.6 0.46 1E-05 38.9 3.8 53 167-219 37-102 (124)
20 cd04729 NanE N-acetylmannosami 88.9 1.6 3.6E-05 37.9 7.0 109 60-191 82-208 (219)
21 PF00224 PK: Pyruvate kinase, 88.6 1 2.2E-05 42.7 5.9 134 58-204 177-336 (348)
22 TIGR00262 trpA tryptophan synt 88.5 3 6.6E-05 37.9 8.7 116 60-191 105-229 (256)
23 cd04732 HisA HisA. Phosphorib 88.4 8 0.00017 33.4 10.9 129 53-191 76-221 (234)
24 PRK01130 N-acetylmannosamine-6 88.2 2.5 5.5E-05 36.7 7.7 110 59-191 77-204 (221)
25 PRK00278 trpC indole-3-glycero 88.0 5.1 0.00011 36.4 9.8 116 59-195 122-251 (260)
26 PRK00278 trpC indole-3-glycero 87.0 6.5 0.00014 35.7 9.9 110 59-192 72-190 (260)
27 PRK06106 nicotinate-nucleotide 86.5 1.5 3.3E-05 41.0 5.7 42 160-204 195-236 (281)
28 PLN02591 tryptophan synthase 85.6 3.3 7.3E-05 37.9 7.3 117 59-191 95-220 (250)
29 PRK06559 nicotinate-nucleotide 85.6 1.9 4.2E-05 40.6 5.9 54 148-204 183-239 (290)
30 PTZ00066 pyruvate kinase; Prov 85.4 6.9 0.00015 39.7 10.0 135 58-205 210-371 (513)
31 PF03060 NMO: Nitronate monoox 85.2 0.99 2.2E-05 42.1 3.8 43 146-191 123-165 (330)
32 CHL00200 trpA tryptophan synth 84.8 3.8 8.2E-05 37.7 7.3 117 59-191 108-233 (263)
33 cd04729 NanE N-acetylmannosami 84.7 18 0.00038 31.5 11.1 116 60-189 30-150 (219)
34 PRK08385 nicotinate-nucleotide 84.4 2.1 4.6E-05 39.9 5.6 56 147-205 168-225 (278)
35 PRK06096 molybdenum transport 84.3 3.6 7.9E-05 38.5 7.0 43 159-204 189-231 (284)
36 TIGR01370 cysRS possible cyste 83.9 10 0.00022 36.0 10.0 136 38-193 32-171 (315)
37 PRK06543 nicotinate-nucleotide 83.9 2.4 5.1E-05 39.8 5.6 54 148-204 179-235 (281)
38 cd04730 NPD_like 2-Nitropropan 83.5 7.7 0.00017 33.5 8.3 110 58-191 68-187 (236)
39 TIGR03151 enACPred_II putative 83.3 3.9 8.5E-05 38.1 6.8 112 58-190 23-137 (307)
40 TIGR00007 phosphoribosylformim 83.2 22 0.00049 30.8 11.1 126 58-191 82-220 (230)
41 PRK07428 nicotinate-nucleotide 83.0 4.7 0.0001 37.8 7.2 54 148-204 182-238 (288)
42 PF00072 Response_reg: Respons 83.0 4.4 9.6E-05 29.7 5.8 80 116-198 28-109 (112)
43 PRK07896 nicotinate-nucleotide 82.9 2.8 6.2E-05 39.3 5.8 55 147-204 185-241 (289)
44 cd00331 IGPS Indole-3-glycerol 82.7 4.5 9.8E-05 34.9 6.6 113 59-192 33-151 (217)
45 PF13653 GDPD_2: Glycerophosph 82.3 2.2 4.8E-05 27.5 3.4 26 52-77 1-27 (30)
46 TIGR01334 modD putative molybd 82.1 5 0.00011 37.4 7.0 55 147-204 174-230 (277)
47 PRK06978 nicotinate-nucleotide 82.0 3.3 7.1E-05 39.2 5.8 42 160-204 206-247 (294)
48 PLN02762 pyruvate kinase compl 81.3 12 0.00026 38.0 9.8 135 58-205 204-366 (509)
49 TIGR01064 pyruv_kin pyruvate k 81.0 6.3 0.00014 39.1 7.7 135 58-205 172-333 (473)
50 TIGR02311 HpaI 2,4-dihydroxyhe 80.8 15 0.00034 33.2 9.5 140 52-194 15-175 (249)
51 PF11247 DUF2675: Protein of u 80.7 1 2.2E-05 36.6 1.7 55 168-223 43-97 (98)
52 COG0352 ThiE Thiamine monophos 80.5 27 0.00058 31.4 10.8 137 60-203 24-206 (211)
53 PRK05458 guanosine 5'-monophos 80.4 9.3 0.0002 36.5 8.3 116 56-189 47-168 (326)
54 TIGR01306 GMP_reduct_2 guanosi 79.0 9.4 0.0002 36.4 7.8 114 57-189 45-165 (321)
55 cd00564 TMP_TenI Thiamine mono 77.9 12 0.00026 30.5 7.3 108 60-189 15-122 (196)
56 PLN02623 pyruvate kinase 77.0 13 0.00028 38.4 8.6 135 58-205 279-439 (581)
57 PRK09016 quinolinate phosphori 76.5 6.1 0.00013 37.4 5.7 41 160-203 209-249 (296)
58 PRK06739 pyruvate kinase; Vali 76.4 21 0.00047 34.5 9.5 135 58-205 166-327 (352)
59 cd00288 Pyruvate_Kinase Pyruva 75.8 12 0.00025 37.6 7.9 135 58-205 175-335 (480)
60 PLN02716 nicotinate-nucleotide 75.6 7.3 0.00016 37.1 6.1 45 160-204 204-260 (308)
61 PF00218 IGPS: Indole-3-glycer 73.1 27 0.00058 32.2 8.9 105 59-188 120-237 (254)
62 PRK11840 bifunctional sulfur c 73.0 12 0.00027 36.0 6.9 30 164-196 256-290 (326)
63 PLN02461 Probable pyruvate kin 72.8 19 0.00041 36.6 8.5 135 58-205 194-355 (511)
64 TIGR00693 thiE thiamine-phosph 72.5 25 0.00055 29.5 8.1 104 60-188 16-122 (196)
65 PRK08649 inosine 5-monophospha 72.4 11 0.00024 36.4 6.5 66 116-189 137-215 (368)
66 TIGR00078 nadC nicotinate-nucl 72.2 13 0.00029 34.2 6.7 42 159-203 178-219 (265)
67 PTZ00314 inosine-5'-monophosph 71.9 17 0.00037 36.3 8.0 113 58-191 241-375 (495)
68 cd04726 KGPDC_HPS 3-Keto-L-gul 71.8 22 0.00049 29.8 7.6 76 109-190 54-134 (202)
69 PRK09140 2-dehydro-3-deoxy-6-p 71.7 44 0.00095 29.5 9.7 122 59-203 24-148 (206)
70 PRK14024 phosphoribosyl isomer 71.7 58 0.0013 29.0 10.6 121 58-190 85-223 (241)
71 PRK13802 bifunctional indole-3 70.9 40 0.00088 35.5 10.6 137 59-217 122-273 (695)
72 cd04743 NPD_PKS 2-Nitropropane 70.6 16 0.00036 34.8 7.2 52 132-192 82-133 (320)
73 cd01572 QPRTase Quinolinate ph 70.3 15 0.00032 33.8 6.7 53 147-203 171-223 (268)
74 PRK00043 thiE thiamine-phospha 69.3 68 0.0015 27.0 10.1 110 61-194 72-198 (212)
75 PRK00748 1-(5-phosphoribosyl)- 69.2 52 0.0011 28.4 9.5 125 58-191 84-222 (233)
76 PF02254 TrkA_N: TrkA-N domain 69.1 38 0.00081 25.7 7.7 68 112-188 44-115 (116)
77 PF02581 TMP-TENI: Thiamine mo 68.9 21 0.00045 30.2 6.8 105 59-191 14-124 (180)
78 cd02812 PcrB_like PcrB_like pr 68.8 41 0.00088 30.5 9.0 131 53-196 57-214 (219)
79 PRK05742 nicotinate-nucleotide 68.4 14 0.00031 34.4 6.1 42 159-203 189-230 (277)
80 cd04723 HisA_HisF Phosphoribos 67.7 89 0.0019 27.7 10.9 124 53-190 81-219 (233)
81 TIGR01163 rpe ribulose-phospha 67.5 20 0.00044 30.1 6.5 21 58-78 67-87 (210)
82 cd00381 IMPDH IMPDH: The catal 66.9 19 0.0004 33.9 6.7 114 56-190 92-227 (325)
83 PRK10840 transcriptional regul 66.6 43 0.00094 28.0 8.3 68 132-200 49-120 (216)
84 PRK13585 1-(5-phosphoribosyl)- 66.6 68 0.0015 28.0 9.8 108 92-203 5-122 (241)
85 cd01568 QPRTase_NadC Quinolina 66.3 21 0.00045 32.7 6.7 54 147-204 170-223 (269)
86 COG0648 Nfo Endonuclease IV [D 66.2 2.9 6.2E-05 39.3 1.1 17 231-247 171-187 (280)
87 COG2197 CitB Response regulato 66.0 38 0.00082 29.6 8.0 71 130-201 44-115 (211)
88 PLN02765 pyruvate kinase 65.9 27 0.00059 35.7 8.0 135 58-205 207-368 (526)
89 TIGR01302 IMP_dehydrog inosine 65.6 32 0.00068 33.8 8.2 118 58-190 224-357 (450)
90 TIGR03151 enACPred_II putative 65.3 30 0.00065 32.3 7.7 109 59-191 76-192 (307)
91 TIGR03128 RuMP_HxlA 3-hexulose 64.5 54 0.0012 27.8 8.5 87 112-204 56-157 (206)
92 KOG3997 Major apurinic/apyrimi 64.4 2.3 4.9E-05 39.6 0.1 13 231-243 175-187 (281)
93 PRK00043 thiE thiamine-phospha 63.8 43 0.00093 28.2 7.7 105 60-189 24-131 (212)
94 PRK10669 putative cation:proto 63.8 52 0.0011 32.7 9.4 104 60-191 430-537 (558)
95 PRK09140 2-dehydro-3-deoxy-6-p 63.7 15 0.00033 32.4 5.2 89 111-200 12-101 (206)
96 TIGR01588 citE citrate lyase, 63.7 72 0.0016 29.4 9.7 89 114-204 8-108 (288)
97 PRK02083 imidazole glycerol ph 63.6 68 0.0015 28.5 9.3 105 93-203 7-120 (253)
98 PRK13125 trpA tryptophan synth 63.4 28 0.0006 31.1 6.8 115 58-191 89-216 (244)
99 cd00405 PRAI Phosphoribosylant 63.0 67 0.0014 27.5 8.9 114 59-193 8-131 (203)
100 COG3836 HpcH 2,4-dihydroxyhept 63.0 11 0.00024 35.2 4.3 133 57-193 76-240 (255)
101 PF01884 PcrB: PcrB family; I 62.7 6.9 0.00015 35.8 2.9 71 119-190 137-212 (230)
102 cd04730 NPD_like 2-Nitropropan 61.8 70 0.0015 27.5 8.9 51 132-190 80-130 (236)
103 PF04131 NanE: Putative N-acet 61.8 40 0.00087 30.3 7.4 113 61-187 3-117 (192)
104 PRK08114 cystathionine beta-ly 61.7 16 0.00034 35.5 5.3 124 60-188 67-206 (395)
105 PLN02274 inosine-5'-monophosph 61.6 27 0.00059 35.1 7.1 75 111-189 239-317 (505)
106 PRK00208 thiG thiazole synthas 61.4 32 0.0007 32.1 7.0 35 159-196 175-216 (250)
107 TIGR01768 GGGP-family geranylg 61.2 1.3E+02 0.0028 27.4 10.9 83 106-191 116-210 (223)
108 PHA00440 host protein H-NS-int 61.2 5.3 0.00011 32.5 1.6 55 168-223 43-97 (98)
109 cd04728 ThiG Thiazole synthase 61.0 33 0.00072 32.0 7.0 35 159-196 175-216 (248)
110 PF00290 Trp_syntA: Tryptophan 60.8 18 0.0004 33.4 5.3 116 59-191 104-228 (259)
111 PRK13111 trpA tryptophan synth 60.6 39 0.00085 31.0 7.4 116 59-191 106-230 (258)
112 COG1908 FrhD Coenzyme F420-red 60.6 14 0.00029 31.5 4.0 47 169-215 40-99 (132)
113 PLN02623 pyruvate kinase 60.1 14 0.00031 38.0 4.9 61 132-194 291-353 (581)
114 PRK07455 keto-hydroxyglutarate 59.8 71 0.0015 27.6 8.5 118 59-203 26-150 (187)
115 PRK10643 DNA-binding transcrip 59.6 65 0.0014 26.0 7.8 68 132-201 44-113 (222)
116 cd01573 modD_like ModD; Quinol 59.4 27 0.00058 32.2 6.2 42 160-204 184-225 (272)
117 PRK09958 DNA-binding transcrip 59.2 86 0.0019 25.1 8.5 70 132-203 45-116 (204)
118 cd04724 Tryptophan_synthase_al 59.0 50 0.0011 29.5 7.7 113 60-191 94-217 (242)
119 cd08564 GDPD_GsGDE_like Glycer 58.8 20 0.00043 32.0 5.1 45 148-197 212-261 (265)
120 TIGR00735 hisF imidazoleglycer 57.9 1.4E+02 0.003 26.7 10.4 128 58-191 84-231 (254)
121 PRK06843 inosine 5-monophospha 57.8 24 0.00051 34.8 5.8 75 111-189 144-222 (404)
122 COG2022 ThiG Uncharacterized e 57.7 10 0.00022 35.5 3.1 39 148-190 174-212 (262)
123 PF03328 HpcH_HpaI: HpcH/HpaI 57.3 87 0.0019 27.2 8.7 27 54-80 5-31 (221)
124 PRK13587 1-(5-phosphoribosyl)- 57.2 1.1E+02 0.0024 27.3 9.6 122 58-191 86-223 (234)
125 PRK11517 transcriptional regul 57.1 49 0.0011 26.9 6.8 68 132-201 44-112 (223)
126 PRK03659 glutathione-regulated 56.8 80 0.0017 32.1 9.5 102 60-189 413-518 (601)
127 PRK13585 1-(5-phosphoribosyl)- 56.8 69 0.0015 27.9 8.1 125 58-191 86-224 (241)
128 cd08570 GDPD_YPL206cp_fungi Gl 56.7 14 0.0003 32.3 3.7 30 48-77 202-232 (234)
129 cd08564 GDPD_GsGDE_like Glycer 56.7 17 0.00036 32.5 4.2 36 48-85 221-261 (265)
130 TIGR00007 phosphoribosylformim 56.2 1.1E+02 0.0025 26.4 9.2 104 96-203 5-118 (230)
131 PRK08072 nicotinate-nucleotide 55.6 41 0.0009 31.3 6.7 41 160-203 189-229 (277)
132 COG0469 PykF Pyruvate kinase [ 55.5 66 0.0014 32.6 8.5 132 58-205 176-337 (477)
133 cd04722 TIM_phosphate_binding 55.5 1E+02 0.0022 24.4 9.0 16 64-79 78-93 (200)
134 cd04732 HisA HisA. Phosphorib 55.2 1.1E+02 0.0025 26.2 9.1 104 95-203 5-116 (234)
135 cd00945 Aldolase_Class_I Class 55.0 42 0.0009 27.3 6.0 20 58-77 66-85 (201)
136 PRK10336 DNA-binding transcrip 54.7 90 0.002 25.1 7.9 68 132-201 44-113 (219)
137 PRK00748 1-(5-phosphoribosyl)- 54.5 96 0.0021 26.7 8.5 102 96-202 7-119 (233)
138 COG1465 Predicted alternative 54.4 11 0.00024 36.6 2.8 39 164-202 9-48 (376)
139 cd08561 GDPD_cytoplasmic_ScUgp 54.4 22 0.00048 31.2 4.6 36 48-85 210-246 (249)
140 TIGR01305 GMP_reduct_1 guanosi 54.3 16 0.00036 35.4 4.0 68 119-189 105-178 (343)
141 PRK06552 keto-hydroxyglutarate 53.9 1.2E+02 0.0027 27.0 9.2 121 59-203 27-153 (213)
142 PRK09206 pyruvate kinase; Prov 53.9 28 0.00061 34.9 5.7 73 119-194 174-248 (470)
143 PLN02334 ribulose-phosphate 3- 53.1 58 0.0013 28.6 7.0 125 60-203 78-222 (229)
144 cd02809 alpha_hydroxyacid_oxid 52.5 1E+02 0.0022 28.3 8.7 70 117-191 180-258 (299)
145 PRK05718 keto-hydroxyglutarate 52.4 1.3E+02 0.0027 27.0 9.1 77 116-203 73-153 (212)
146 cd07896 Adenylation_kDNA_ligas 52.4 38 0.00083 28.2 5.5 28 165-192 130-158 (174)
147 PRK06247 pyruvate kinase; Prov 52.3 93 0.002 31.4 9.0 132 58-205 174-331 (476)
148 PRK14114 1-(5-phosphoribosyl)- 51.9 1.8E+02 0.004 26.3 10.4 101 96-202 7-118 (241)
149 TIGR03787 marine_sort_RR prote 51.9 88 0.0019 25.6 7.5 68 132-200 44-114 (227)
150 COG0159 TrpA Tryptophan syntha 51.6 58 0.0013 30.6 7.0 107 60-191 112-235 (265)
151 cd08609 GDPD_GDE3 Glycerophosp 51.5 22 0.00048 33.5 4.3 37 49-87 244-281 (315)
152 TIGR01182 eda Entner-Doudoroff 51.2 1E+02 0.0022 27.6 8.2 119 59-204 22-147 (204)
153 cd08612 GDPD_GDE4 Glycerophosp 51.2 35 0.00076 31.3 5.5 45 149-198 251-296 (300)
154 cd01571 NAPRTase_B Nicotinate 50.6 33 0.00071 32.1 5.3 46 160-205 185-240 (302)
155 cd08610 GDPD_GDE6 Glycerophosp 50.5 25 0.00053 33.2 4.5 37 49-87 244-281 (316)
156 PRK02615 thiamine-phosphate py 50.5 67 0.0014 31.0 7.4 101 60-188 160-266 (347)
157 PLN02274 inosine-5'-monophosph 50.3 64 0.0014 32.5 7.5 120 56-190 246-381 (505)
158 PRK13856 two-component respons 50.2 1E+02 0.0022 26.0 7.8 68 132-200 45-113 (241)
159 PRK06354 pyruvate kinase; Prov 50.0 93 0.002 32.2 8.8 135 58-205 179-340 (590)
160 TIGR01387 cztR_silR_copR heavy 49.9 96 0.0021 24.9 7.3 67 132-200 42-110 (218)
161 CHL00148 orf27 Ycf27; Reviewed 49.9 76 0.0017 26.1 6.9 67 132-200 50-117 (240)
162 PRK05567 inosine 5'-monophosph 49.3 97 0.0021 30.7 8.6 117 59-190 229-361 (486)
163 PRK02083 imidazole glycerol ph 49.3 1.9E+02 0.0041 25.6 10.0 21 58-78 84-104 (253)
164 PRK04302 triosephosphate isome 49.3 1E+02 0.0022 27.0 7.9 39 149-190 161-203 (223)
165 PRK10360 DNA-binding transcrip 49.2 1.3E+02 0.0029 23.8 8.5 67 132-201 47-113 (196)
166 PF05690 ThiG: Thiazole biosyn 49.2 20 0.00043 33.4 3.5 40 147-190 166-205 (247)
167 cd08562 GDPD_EcUgpQ_like Glyce 48.8 23 0.0005 30.3 3.7 30 48-77 197-227 (229)
168 cd00429 RPE Ribulose-5-phospha 48.7 54 0.0012 27.4 5.9 21 58-78 68-88 (211)
169 PRK11475 DNA-binding transcrip 48.6 52 0.0011 28.8 6.0 43 158-200 67-109 (207)
170 TIGR01949 AroFGH_arch predicte 48.6 73 0.0016 28.6 7.0 82 119-204 154-248 (258)
171 PRK09483 response regulator; P 48.4 1.4E+02 0.0031 24.1 8.1 42 159-201 75-116 (217)
172 PRK11143 glpQ glycerophosphodi 48.1 26 0.00057 33.5 4.3 50 145-197 289-348 (355)
173 PRK10430 DNA-binding transcrip 48.1 1.2E+02 0.0026 26.0 8.1 67 132-200 49-117 (239)
174 cd08601 GDPD_SaGlpQ_like Glyce 47.9 33 0.00072 30.3 4.7 37 48-86 216-253 (256)
175 PF00977 His_biosynth: Histidi 47.6 1.6E+02 0.0034 26.1 8.9 127 53-190 76-221 (229)
176 PRK07226 fructose-bisphosphate 47.3 51 0.0011 29.8 5.9 70 132-205 173-253 (267)
177 PRK02290 3-dehydroquinate synt 47.1 13 0.00027 36.2 2.0 34 169-202 13-46 (344)
178 cd08612 GDPD_GDE4 Glycerophosp 47.0 31 0.00067 31.6 4.5 29 49-77 260-289 (300)
179 cd08610 GDPD_GDE6 Glycerophosp 46.8 36 0.00077 32.2 4.9 54 142-201 229-283 (316)
180 TIGR02154 PhoB phosphate regul 46.6 86 0.0019 25.2 6.6 67 132-200 46-116 (226)
181 PRK14114 1-(5-phosphoribosyl)- 45.6 2.3E+02 0.0051 25.6 10.0 126 58-190 83-224 (241)
182 COG4126 Hydantoin racemase [Am 45.4 85 0.0018 29.1 6.9 109 63-196 62-188 (230)
183 PRK09454 ugpQ cytoplasmic glyc 45.3 33 0.00072 30.4 4.3 30 48-77 207-237 (249)
184 TIGR01303 IMP_DH_rel_1 IMP deh 45.3 26 0.00056 35.0 3.9 73 111-187 216-292 (475)
185 PRK13957 indole-3-glycerol-pho 45.2 2.3E+02 0.005 26.2 9.8 105 59-188 113-229 (247)
186 PRK11083 DNA-binding response 45.1 1.1E+02 0.0024 24.7 7.0 67 132-200 47-115 (228)
187 cd08583 PI-PLCc_GDPD_SF_unchar 45.0 30 0.00066 30.2 3.9 30 48-77 203-233 (237)
188 PRK05581 ribulose-phosphate 3- 44.8 64 0.0014 27.5 5.8 28 51-78 64-92 (220)
189 cd08565 GDPD_pAtGDE_like Glyce 44.6 28 0.0006 30.8 3.6 28 50-77 201-229 (235)
190 COG0157 NadC Nicotinate-nucleo 44.2 56 0.0012 31.0 5.7 53 148-203 174-229 (280)
191 PF03060 NMO: Nitronate monoox 44.2 89 0.0019 29.2 7.1 75 112-191 138-221 (330)
192 cd08563 GDPD_TtGDE_like Glycer 44.2 30 0.00064 30.0 3.7 30 48-77 198-228 (230)
193 PF01959 DHQS: 3-dehydroquinat 43.9 14 0.00031 35.9 1.8 31 172-202 15-45 (354)
194 cd08561 GDPD_cytoplasmic_ScUgp 43.7 50 0.0011 29.0 5.1 50 142-197 196-246 (249)
195 PRK03512 thiamine-phosphate py 43.3 2.3E+02 0.005 24.9 9.9 106 60-190 22-130 (211)
196 cd08581 GDPD_like_1 Glyceropho 43.3 33 0.00071 30.2 3.9 30 48-77 197-227 (229)
197 PRK04128 1-(5-phosphoribosyl)- 43.2 1.3E+02 0.0027 27.0 7.6 76 118-201 30-116 (228)
198 PRK06512 thiamine-phosphate py 43.2 2.4E+02 0.0052 25.1 10.6 102 60-190 29-139 (221)
199 PRK05826 pyruvate kinase; Prov 42.9 38 0.00082 33.9 4.7 38 168-205 172-210 (465)
200 PRK10537 voltage-gated potassi 42.6 2.2E+02 0.0048 27.8 9.7 71 112-191 284-358 (393)
201 PRK06354 pyruvate kinase; Prov 42.5 49 0.0011 34.1 5.5 73 119-194 180-254 (590)
202 PRK09836 DNA-binding transcrip 42.1 1.3E+02 0.0028 24.7 7.0 68 132-201 44-113 (227)
203 cd03174 DRE_TIM_metallolyase D 41.8 1E+02 0.0023 26.7 6.8 92 148-243 53-175 (265)
204 cd08575 GDPD_GDE4_like Glycero 41.5 33 0.00072 30.8 3.7 29 49-77 230-259 (264)
205 COG1646 Predicted phosphate-bi 41.3 3E+02 0.0066 25.7 12.7 140 57-201 28-235 (240)
206 PF01053 Cys_Met_Meta_PP: Cys/ 41.3 22 0.00048 34.3 2.7 123 61-187 61-197 (386)
207 PRK09206 pyruvate kinase; Prov 41.0 1E+02 0.0022 31.0 7.3 135 58-205 173-334 (470)
208 CHL00162 thiG thiamin biosynth 40.9 37 0.00079 32.1 3.9 44 148-197 181-231 (267)
209 TIGR03815 CpaE_hom_Actino heli 40.8 1.2E+02 0.0027 27.7 7.4 76 117-200 7-82 (322)
210 PRK10766 DNA-binding transcrip 40.7 1.2E+02 0.0025 24.8 6.6 64 132-199 46-112 (221)
211 TIGR01859 fruc_bis_ald_ fructo 40.6 66 0.0014 29.9 5.6 140 59-203 86-245 (282)
212 TIGR01304 IMP_DH_rel_2 IMP deh 40.6 53 0.0011 31.9 5.1 56 131-189 154-216 (369)
213 cd08582 GDPD_like_2 Glyceropho 40.4 38 0.00082 29.4 3.8 30 48-77 199-229 (233)
214 PRK07455 keto-hydroxyglutarate 40.4 93 0.002 26.9 6.2 78 113-196 16-98 (187)
215 PRK10046 dpiA two-component re 40.4 1.5E+02 0.0032 25.3 7.3 66 132-199 50-117 (225)
216 PRK10529 DNA-binding transcrip 39.7 1.5E+02 0.0032 24.2 7.1 68 132-201 45-113 (225)
217 cd08579 GDPD_memb_like Glycero 39.5 37 0.00081 29.2 3.6 29 48-76 188-217 (220)
218 cd08568 GDPD_TmGDE_like Glycer 39.4 1E+02 0.0022 26.7 6.4 59 145-204 78-139 (226)
219 PRK15479 transcriptional regul 38.7 1.5E+02 0.0032 23.8 6.8 68 132-201 44-113 (221)
220 PRK07695 transcriptional regul 38.6 2E+02 0.0043 24.6 7.9 40 146-190 84-123 (201)
221 cd04731 HisF The cyclase subun 38.5 2.7E+02 0.0059 24.3 10.1 128 58-191 81-225 (243)
222 PTZ00314 inosine-5'-monophosph 38.3 96 0.0021 31.1 6.7 73 111-188 232-309 (495)
223 PRK08662 nicotinate phosphorib 38.2 1.1E+02 0.0023 29.4 6.7 33 160-192 201-237 (343)
224 cd08609 GDPD_GDE3 Glycerophosp 37.8 73 0.0016 30.0 5.5 49 150-203 236-285 (315)
225 cd08606 GDPD_YPL110cp_fungi Gl 37.6 46 0.00099 30.0 4.0 46 149-199 235-283 (286)
226 PF00478 IMPDH: IMP dehydrogen 37.5 29 0.00064 33.6 2.9 76 109-189 97-177 (352)
227 cd00377 ICL_PEPM Members of th 37.5 1.2E+02 0.0026 27.3 6.6 59 144-202 119-194 (243)
228 TIGR00735 hisF imidazoleglycer 37.4 2.2E+02 0.0048 25.4 8.3 102 96-203 10-120 (254)
229 PRK14024 phosphoribosyl isomer 37.2 3E+02 0.0065 24.5 9.7 107 91-203 5-121 (241)
230 cd00452 KDPG_aldolase KDPG and 37.1 1.1E+02 0.0023 26.2 6.0 81 113-199 8-93 (190)
231 cd00288 Pyruvate_Kinase Pyruva 37.1 55 0.0012 32.9 4.8 72 119-194 176-249 (480)
232 cd08608 GDPD_GDE2 Glycerophosp 36.8 56 0.0012 31.4 4.6 45 49-95 222-268 (351)
233 cd00381 IMPDH IMPDH: The catal 36.4 62 0.0013 30.5 4.8 65 120-188 93-162 (325)
234 KOG0538 Glycolate oxidase [Ene 36.2 62 0.0013 31.6 4.8 116 59-191 136-253 (363)
235 cd08574 GDPD_GDE_2_3_6 Glycero 36.0 45 0.00097 29.8 3.7 28 49-76 222-250 (252)
236 PRK13435 response regulator; P 36.0 2E+02 0.0043 22.1 8.0 66 132-203 50-118 (145)
237 PRK13586 1-(5-phosphoribosyl)- 34.3 3.5E+02 0.0075 24.3 9.1 106 93-203 5-119 (232)
238 PRK09454 ugpQ cytoplasmic glyc 34.3 56 0.0012 29.0 3.9 46 143-194 194-240 (249)
239 cd08601 GDPD_SaGlpQ_like Glyce 34.1 86 0.0019 27.7 5.1 44 149-197 208-252 (256)
240 PRK05096 guanosine 5'-monophos 34.1 40 0.00087 32.9 3.2 69 119-187 106-177 (346)
241 PRK09935 transcriptional regul 34.0 2.4E+02 0.0052 22.4 7.6 68 132-201 49-118 (210)
242 PRK01033 imidazole glycerol ph 33.9 3.5E+02 0.0077 24.3 11.5 120 59-190 85-227 (258)
243 PF07085 DRTGG: DRTGG domain; 33.7 61 0.0013 24.9 3.7 45 49-94 39-90 (105)
244 cd08556 GDPD Glycerophosphodie 33.6 2E+02 0.0044 23.2 6.9 59 145-204 48-112 (189)
245 cd08555 PI-PLCc_GDPD_SF Cataly 33.6 57 0.0012 27.4 3.7 28 49-76 148-177 (179)
246 TIGR03572 WbuZ glycosyl amidat 32.9 3.3E+02 0.0071 23.6 10.7 134 53-190 77-228 (232)
247 cd08556 GDPD Glycerophosphodie 32.3 60 0.0013 26.3 3.5 29 48-76 158-187 (189)
248 PRK06843 inosine 5-monophospha 32.1 2.6E+02 0.0057 27.7 8.5 120 53-191 148-287 (404)
249 PRK07807 inosine 5-monophospha 32.1 51 0.0011 33.0 3.7 54 131-187 238-294 (479)
250 PRK10161 transcriptional regul 31.8 2.9E+02 0.0062 22.6 7.6 68 132-201 46-117 (229)
251 cd06311 PBP1_ABC_sugar_binding 31.8 1.1E+02 0.0025 26.0 5.3 29 168-196 45-74 (274)
252 PRK06806 fructose-bisphosphate 31.2 1.6E+02 0.0035 27.4 6.6 131 58-192 85-233 (281)
253 PRK09468 ompR osmolarity respo 31.2 2.4E+02 0.0053 23.3 7.1 68 132-201 49-118 (239)
254 PF11303 DUF3105: Protein of u 31.1 72 0.0016 26.7 3.8 33 173-205 41-74 (130)
255 PRK15369 two component system 31.0 1.7E+02 0.0037 22.8 5.9 40 161-201 79-118 (211)
256 PRK10816 DNA-binding transcrip 30.9 2.3E+02 0.005 23.1 6.9 69 132-202 44-114 (223)
257 TIGR01919 hisA-trpF 1-(5-phosp 30.8 4E+02 0.0087 24.0 10.5 128 58-190 84-226 (243)
258 PRK15447 putative protease; Pr 30.7 1.9E+02 0.0042 26.8 7.0 80 119-201 16-105 (301)
259 KOG4615 Uncharacterized conser 30.7 10 0.00022 30.9 -1.2 19 225-243 81-99 (122)
260 COG0135 TrpF Phosphoribosylant 30.6 3.2E+02 0.0069 24.6 8.1 121 58-184 10-181 (208)
261 PRK10403 transcriptional regul 30.6 2E+02 0.0043 22.7 6.2 40 161-201 82-121 (215)
262 PF03740 PdxJ: Pyridoxal phosp 30.5 1.3E+02 0.0028 27.9 5.7 39 167-205 20-64 (239)
263 PRK08187 pyruvate kinase; Vali 30.2 2.5E+02 0.0055 28.5 8.1 136 58-205 313-475 (493)
264 PRK03562 glutathione-regulated 30.1 4.1E+02 0.0089 27.3 9.8 116 51-191 401-520 (621)
265 TIGR00734 hisAF_rel hisA/hisF 29.6 4E+02 0.0087 23.6 9.0 106 93-200 4-122 (221)
266 PRK09581 pleD response regulat 29.0 3.3E+02 0.0071 24.8 8.1 66 132-199 46-115 (457)
267 TIGR03884 sel_bind_Methan sele 28.8 96 0.0021 24.1 3.9 26 162-187 20-47 (74)
268 PRK11173 two-component respons 28.5 2.7E+02 0.0058 23.2 7.0 69 132-203 47-118 (237)
269 PRK04147 N-acetylneuraminate l 27.9 1.1E+02 0.0023 28.0 4.8 33 159-191 73-108 (293)
270 cd08606 GDPD_YPL110cp_fungi Gl 27.5 1E+02 0.0022 27.7 4.6 35 49-85 244-281 (286)
271 cd06295 PBP1_CelR Ligand bindi 27.3 1.9E+02 0.0041 24.6 5.9 20 172-191 53-73 (275)
272 cd08576 GDPD_like_SMaseD_PLD G 27.3 1E+02 0.0022 28.8 4.6 29 49-77 208-237 (265)
273 PRK08999 hypothetical protein; 27.2 2.5E+02 0.0053 25.5 6.9 29 159-190 226-254 (312)
274 cd02810 DHOD_DHPD_FMN Dihydroo 27.1 4.6E+02 0.0099 23.5 9.2 83 108-190 98-197 (289)
275 PRK13586 1-(5-phosphoribosyl)- 26.8 4.7E+02 0.01 23.5 10.8 30 58-87 83-115 (232)
276 TIGR01064 pyruv_kin pyruvate k 26.6 99 0.0021 30.9 4.6 73 119-194 173-247 (473)
277 cd08608 GDPD_GDE2 Glycerophosp 26.4 1.2E+02 0.0026 29.2 5.0 53 143-201 208-261 (351)
278 PRK01033 imidazole glycerol ph 26.4 4.8E+02 0.01 23.5 9.3 38 163-203 80-120 (258)
279 cd00945 Aldolase_Class_I Class 26.4 1.2E+02 0.0027 24.5 4.5 33 159-191 48-87 (201)
280 PLN02495 oxidoreductase, actin 26.1 4.8E+02 0.01 25.6 9.1 23 56-78 31-53 (385)
281 cd00429 RPE Ribulose-5-phospha 26.0 2.2E+02 0.0048 23.7 6.0 68 132-201 25-99 (211)
282 PRK13587 1-(5-phosphoribosyl)- 25.9 4.8E+02 0.01 23.3 9.1 108 92-203 4-122 (234)
283 PF12696 TraG-D_C: TraM recogn 25.7 3.1E+02 0.0067 21.6 6.5 67 139-205 8-81 (128)
284 PRK07315 fructose-bisphosphate 25.7 1.7E+02 0.0036 27.5 5.7 129 59-191 88-234 (293)
285 TIGR00995 3a0901s06TIC22 chlor 25.6 60 0.0013 30.6 2.7 61 95-158 181-242 (270)
286 PF02662 FlpD: Methyl-viologen 25.6 63 0.0014 26.4 2.6 18 59-76 41-58 (124)
287 cd08567 GDPD_SpGDE_like Glycer 25.4 86 0.0019 27.4 3.5 30 48-77 229-259 (263)
288 PTZ00300 pyruvate kinase; Prov 25.3 1.3E+02 0.0028 30.2 5.1 93 98-194 122-222 (454)
289 cd06309 PBP1_YtfQ_like Peripla 25.0 1.8E+02 0.0038 24.8 5.3 25 170-194 43-67 (273)
290 PRK10651 transcriptional regul 24.8 3.5E+02 0.0077 21.4 7.6 68 132-201 52-121 (216)
291 PLN02460 indole-3-glycerol-pho 24.7 3.7E+02 0.0081 26.1 7.9 80 112-195 232-328 (338)
292 PRK14725 pyruvate kinase; Prov 24.5 1.2E+02 0.0026 31.8 4.8 72 119-193 434-511 (608)
293 cd08580 GDPD_Rv2277c_like Glyc 24.3 1E+02 0.0022 28.3 3.9 41 149-194 219-261 (263)
294 COG3836 HpcH 2,4-dihydroxyhept 24.1 5.7E+02 0.012 24.1 8.7 135 55-194 21-180 (255)
295 TIGR02321 Pphn_pyruv_hyd phosp 24.0 2.4E+02 0.0051 26.5 6.4 35 170-204 166-203 (290)
296 cd08580 GDPD_Rv2277c_like Glyc 24.0 1E+02 0.0022 28.2 3.9 30 48-77 227-258 (263)
297 cd06314 PBP1_tmGBP Periplasmic 23.9 2.3E+02 0.0049 24.2 5.8 24 171-194 44-67 (271)
298 PRK10955 DNA-binding transcrip 23.8 4E+02 0.0086 21.6 8.4 66 132-200 44-111 (232)
299 TIGR02782 TrbB_P P-type conjug 23.6 4.8E+02 0.01 24.2 8.2 56 146-202 191-251 (299)
300 PHA02587 30 DNA ligase; Provis 23.6 1.7E+02 0.0037 29.3 5.6 28 165-192 318-346 (488)
301 TIGR03586 PseI pseudaminic aci 23.5 5E+02 0.011 24.9 8.5 125 59-188 19-166 (327)
302 cd00516 PRTase_typeII Phosphor 23.5 1.8E+02 0.0039 26.1 5.3 42 161-205 186-228 (281)
303 cd06299 PBP1_LacI_like_13 Liga 23.0 2.9E+02 0.0062 23.2 6.2 24 171-194 44-67 (265)
304 cd08575 GDPD_GDE4_like Glycero 22.7 1.1E+02 0.0023 27.6 3.7 36 149-187 221-257 (264)
305 PRK10610 chemotaxis regulatory 22.6 2.7E+02 0.0058 19.2 7.2 29 170-198 90-118 (129)
306 PLN02334 ribulose-phosphate 3- 22.6 5.2E+02 0.011 22.6 9.0 109 60-188 23-145 (229)
307 PRK13789 phosphoribosylamine-- 22.6 3.5E+02 0.0076 26.3 7.4 106 58-180 56-176 (426)
308 cd04725 OMP_decarboxylase_like 22.2 1.9E+02 0.0042 25.3 5.1 25 173-197 133-157 (216)
309 PF13407 Peripla_BP_4: Peripla 22.1 94 0.002 26.2 3.1 31 169-199 42-72 (257)
310 cd08576 GDPD_like_SMaseD_PLD G 22.0 1.8E+02 0.004 27.2 5.1 47 148-199 193-245 (265)
311 PF06506 PrpR_N: Propionate ca 21.9 4.8E+02 0.01 21.9 8.0 125 59-192 22-153 (176)
312 cd00958 DhnA Class I fructose- 21.8 5.3E+02 0.011 22.3 9.9 27 58-84 22-48 (235)
313 cd01539 PBP1_GGBP Periplasmic 21.8 2.9E+02 0.0064 24.4 6.3 26 171-196 46-71 (303)
314 PRK08072 nicotinate-nucleotide 21.7 1.9E+02 0.0041 27.0 5.2 70 113-190 191-261 (277)
315 TIGR03275 methan_mark_8 putati 21.6 5.4E+02 0.012 24.4 8.0 130 59-204 77-213 (259)
316 PF00107 ADH_zinc_N: Zinc-bind 21.5 3.7E+02 0.0079 20.4 8.6 108 51-180 15-129 (130)
317 COG0151 PurD Phosphoribosylami 21.3 3.5E+02 0.0077 27.3 7.2 117 58-190 51-187 (428)
318 COG1879 RbsB ABC-type sugar tr 20.8 1.6E+02 0.0034 26.3 4.4 35 170-204 79-113 (322)
319 cd08574 GDPD_GDE_2_3_6 Glycero 20.8 1.3E+02 0.0028 26.9 3.8 42 142-187 207-249 (252)
320 PF09872 DUF2099: Uncharacteri 20.7 6.8E+02 0.015 23.7 8.5 129 59-203 77-212 (258)
321 cd07895 Adenylation_mRNA_cappi 20.7 89 0.0019 27.0 2.7 26 169-194 172-201 (215)
322 cd06321 PBP1_ABC_sugar_binding 20.6 1.7E+02 0.0037 24.8 4.3 26 170-195 45-70 (271)
323 PRK10100 DNA-binding transcrip 20.5 2.7E+02 0.0059 24.4 5.7 63 133-199 53-120 (216)
324 cd02808 GltS_FMN Glutamate syn 20.5 3.1E+02 0.0068 26.5 6.6 70 119-191 226-316 (392)
325 TIGR02637 RhaS rhamnose ABC tr 20.3 2.1E+02 0.0045 25.0 5.0 29 168-196 41-70 (302)
326 cd08604 GDPD_SHV3_repeat_2 Gly 20.2 4.5E+02 0.0098 24.3 7.3 45 148-194 239-295 (300)
327 cd06301 PBP1_rhizopine_binding 20.1 3.5E+02 0.0076 22.8 6.2 27 168-194 41-68 (272)
328 cd06276 PBP1_FucR_like Ligand- 20.1 2.1E+02 0.0045 24.6 4.9 38 155-192 24-62 (247)
329 PRK06739 pyruvate kinase; Vali 20.1 1.9E+02 0.0042 28.0 5.1 72 119-193 167-240 (352)
330 cd01573 modD_like ModD; Quinol 20.0 2.2E+02 0.0048 26.3 5.2 71 113-189 186-258 (272)
331 PF00224 PK: Pyruvate kinase, 20.0 89 0.0019 29.8 2.7 62 131-194 188-251 (348)
No 1
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=100.00 E-value=3.8e-61 Score=449.68 Aligned_cols=194 Identities=34% Similarity=0.598 Sum_probs=181.6
Q ss_pred cEEEE-----EeCchhHHHHHHHhCCcEEEecCcchHHHhhccceeEEeeeee---cCCce------ecCCCCeEEEEEE
Q 025857 51 KRVWI-----WTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFI---KEGEV------YDSGDRRVGSIIE 116 (247)
Q Consensus 51 K~vWi-----W~~~KevvT~ALEsG~d~~v~~~~~~e~~~~lg~i~~i~pl~i---~~g~~------~~~~g~~va~~~~ 116 (247)
|++|| |+++|++||+|||||||+|++++++++++++||++.++.|..- +|+.. ++.+|+.+|.|++
T Consensus 1 K~~Wi~~~~~w~~~k~~vt~AlEsGvd~vv~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~ 80 (354)
T PF01959_consen 1 KEVWIDADGPWEERKEVVTAALESGVDGVVVDDEDVEKVRELGRIKVIAFDSDGEGDGTDDLPDLKALKAEGKEVGVYVE 80 (354)
T ss_pred CeEEEEcCCChhhHHHHHHHHHHcCCCEEEECHhHhhhhhccceEEEEeccccccCCccccchhhhhhhccCceEEEEEE
Confidence 78999 8899999999999999999999889999999999999996332 22332 3578999999999
Q ss_pred ecChhhHhhhccccCCCCeEEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHH
Q 025857 117 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAV 196 (247)
Q Consensus 117 I~~~e~le~a~~~~~~~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev 196 (247)
|.|+++++.++...+..+|+|++++||||||||||||+||+++++||+.|+|++||+++|++||+|+|||+|+|+|+++|
T Consensus 81 i~~~~~~~~a~~~~~~~~~~iv~~~Dw~iIPlEnliA~~~~~~~~i~a~v~~~~eA~~~~~~LE~G~dGVll~~~d~~ei 160 (354)
T PF01959_consen 81 ITDKEDEEEACELAKRADYVIVEFRDWTIIPLENLIAALQGSSTKIIAVVADAEEARVALEVLEKGVDGVLLDPDDPAEI 160 (354)
T ss_pred ECCHHHHHHHHHHhccCCeEEEEcCCCcEecHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHhcCCCeEEECCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccccceeeeEEEEEEEEEecCCcceeeeeccCCCCCCccC
Q 025857 197 LALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGWIL 246 (247)
Q Consensus 197 ~~l~~~~~~~~~~~~~l~L~~AtVT~V~~vGmGDRVCVDTcSlm~~GEGM 246 (247)
++++++++. .++++++|++|+||+|+|+||||||||||||||+|||||
T Consensus 161 ~~~~~~~~~--~~~~~l~L~~a~Vt~V~~vGmGdRVCVDtcsll~~gEGm 208 (354)
T PF01959_consen 161 KALVALLKE--RSQEKLELVPATVTRVEPVGMGDRVCVDTCSLLRPGEGM 208 (354)
T ss_pred HHHHHHHhh--ccCCcceeEEEEEEEEEEcCCccEEEEEccccCCCCCeE
Confidence 999999876 367889999999999999999999999999999999998
No 2
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=100.00 E-value=1e-60 Score=445.23 Aligned_cols=190 Identities=31% Similarity=0.505 Sum_probs=179.9
Q ss_pred CcEEEEEeCc-----hhHHHHHHHhCCcEEEecCcchHHHhhccceeEEeeeeecCC---ceecCCCCeEEEEEEecChh
Q 025857 50 PKRVWIWTES-----KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEG---EVYDSGDRRVGSIIEVSTPQ 121 (247)
Q Consensus 50 ~K~vWiW~~~-----KevvT~ALEsG~d~~v~~~~~~e~~~~lg~i~~i~pl~i~~g---~~~~~~g~~va~~~~I~~~e 121 (247)
||++|||.++ |++||+|||||||+|++++++++++++||++.++.+ +++ ..++.+|++++.|++|.+++
T Consensus 1 mK~vWi~~~~~~~~~k~~vt~AlEsGv~~vvv~~~~~~~v~~lg~i~~~~~---~~~~~~~~~~~~~~~~~~~v~i~~~~ 77 (344)
T PRK02290 1 MKFVWIKARPDWEERKEVVTTALESGVDGVVVDEEDVERVRELGRIKVAAD---DPDADAVVISGSAGEDGAYVEIRDKE 77 (344)
T ss_pred CceEEEEcCCCchhHHHHHHHHHHcCCCEEEECHHHhHHHHhhCCeeEEEE---cCCcchhhhcccCCceEEEEEECCHH
Confidence 6999999987 999999999999999999888999999999988776 333 34678889999999999999
Q ss_pred hHhhhccccCCCCeEEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 122 ELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 122 ~le~a~~~~~~~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
++++++..++.++|+|++++||||||||||||+| +++++||+.++|++||+++|++||+|+|||+|+|+|+++|+++++
T Consensus 78 ~e~~a~~~~~~~~~viv~~~dW~iIPlEnlIA~~-~~~~~l~a~v~~~~eA~~a~~~LE~G~dGVvl~~~d~~ei~~~~~ 156 (344)
T PRK02290 78 DEEFAAELAKEVDYVIVEGRDWTIIPLENLIADL-GQSGKIIAGVADAEEAKLALEILEKGVDGVLLDPDDPNEIKAIVA 156 (344)
T ss_pred HHHHHHHhhccCCEEEEECCCCcEecHHHHHhhh-cCCceEEEEeCCHHHHHHHHHHhccCCCeEEECCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred hhcccccccceeeeEEEEEEEEEecCCcceeeeeccCCCCCCccC
Q 025857 202 YFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGWIL 246 (247)
Q Consensus 202 ~~~~~~~~~~~l~L~~AtVT~V~~vGmGDRVCVDTcSlm~~GEGM 246 (247)
+++. ++++++|++||||+|+|+||||||||||||||+|||||
T Consensus 157 ~~~~---~~~~l~L~~a~Vt~V~~vG~GdRVCVDtcsll~~gEGm 198 (344)
T PRK02290 157 LIEE---AREKLELVPATVTRVEPVGMGDRVCVDTCSLMEEGEGM 198 (344)
T ss_pred HHhc---cCCcceeEEEEEEEEEEcCCccEEEEEccccCCCCceE
Confidence 9865 78899999999999999999999999999999999999
No 3
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-59 Score=429.54 Aligned_cols=196 Identities=31% Similarity=0.518 Sum_probs=182.6
Q ss_pred CCcEEEE------EeCchhHHHHHHHhCCcEEEecCcchHHHhhccceeEEee------eee-cCC--------------
Q 025857 49 KPKRVWI------WTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDP------LFI-KEG-------------- 101 (247)
Q Consensus 49 ~~K~vWi------W~~~KevvT~ALEsG~d~~v~~~~~~e~~~~lg~i~~i~p------l~i-~~g-------------- 101 (247)
+||++|+ |++.|..+|+|||+|+|++++++++.+++++||+|++++| +++ .+|
T Consensus 1 ~mK~vWl~a~~~~WeekK~~it~alEaG~d~vvv~~~dvervkeLGni~vaa~~~daDiv~vgk~gegdgt~~lp~~~~~ 80 (376)
T COG1465 1 MMKEVWLLAEDESWEEKKKRITAALEAGVDVVVVRPADVERVKELGNIKVAAPSDDADIVVVGKDGEGDGTVDLPADISG 80 (376)
T ss_pred CcceEEEEcCCcchhHhhHHHHHHHhcCCCEEEECHHHHHHHHhhCceEEecccCCCceEEeccCCCCCCcccCcccccc
Confidence 4899999 7789999999999999999999899999999999999998 222 121
Q ss_pred -------ceecCCCCeEEEEEEecChhhHhhhccccCCCCeEEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHH
Q 025857 102 -------EVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQI 174 (247)
Q Consensus 102 -------~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~v 174 (247)
..+...|+.++.|+.|.|+++++++++..+.++|+|+.++||||||||||||++|..+++|||.|+|++|||+
T Consensus 81 s~di~~~~~~~~~G~~~~~yV~I~~ke~EefA~~~~~~~d~~i~~g~DWkiIPLENlIA~l~~e~~kliA~V~saeEA~v 160 (376)
T COG1465 81 SADIEALRELMDRGHEVAAYVEIRSKEDEEFAAERAKVADYVIVVGEDWKIIPLENLIADLQHEKVKLIAGVKSAEEARV 160 (376)
T ss_pred cccHHHHHHhhhcCcceEEEEEEcCccchHHHHhhccccceEEEEcCcceEeeHHHHHHHhhccceEEEEEeccHHHHHH
Confidence 2335678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCeEEEecCCHHHHHHHHHhhcccccccceeeeEEEEEEEEEecCCcceeeeeccCCCCCCccC
Q 025857 175 FLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGWIL 246 (247)
Q Consensus 175 al~~LE~G~DGVll~~~d~~ev~~l~~~~~~~~~~~~~l~L~~AtVT~V~~vGmGDRVCVDTcSlm~~GEGM 246 (247)
||++||+|+|||+|+++||++|+++.+++++ .++++++|++|+||+|+|+|+||||||||||||.+||||
T Consensus 161 A~eTLE~GaDgVll~~~d~~eIk~~~~~~~e--~~~E~~eL~~a~vt~ieplG~gDRVCVDTcsLm~~gEGM 230 (376)
T COG1465 161 ALETLEKGADGVLLDSDDPEEIKKTAEVVEE--AESERLELVTATVTEIEPLGSGDRVCVDTCSLMTRGEGM 230 (376)
T ss_pred HHHHHhccCceEEeCCCCHHHHHHHHHHHHH--hccceeEEEEEEEEEEeecCCCceEEEeeecccccCCce
Confidence 9999999999999999999999999999876 578999999999999999999999999999999999999
No 4
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=94.36 E-value=0.19 Score=46.36 Aligned_cols=92 Identities=9% Similarity=0.065 Sum_probs=71.4
Q ss_pred CeEEEEEEecChhhHhhhccccCCCCeEEEecC--CCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeE
Q 025857 109 RRVGSIIEVSTPQELQQLQPADGQAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGI 186 (247)
Q Consensus 109 ~~va~~~~I~~~e~le~a~~~~~~~~~vVv~~~--DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGV 186 (247)
..+|.+..+.++.-.|.+... ..|+++|+.. ....--+++++.+++..+...+..+.+.+. -.+..+|+.|++||
T Consensus 18 ~~~G~~~~~~sp~~~E~~a~~--GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~~-~~i~r~LD~GA~GI 94 (267)
T PRK10128 18 VQIGLWLSSTTSYMAEIAATS--GYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGSK-PLIKQVLDIGAQTL 94 (267)
T ss_pred ceEEEEecCCCcHHHHHHHHc--CCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCCH-HHHHHHhCCCCCee
Confidence 457888999999887777654 4999999975 344446778888888888778888877654 45578999999999
Q ss_pred EEe-cCCHHHHHHHHHhh
Q 025857 187 VLK-VEDVKAVLALKEYF 203 (247)
Q Consensus 187 ll~-~~d~~ev~~l~~~~ 203 (247)
+++ .++.+|++++.+..
T Consensus 95 ivP~V~saeeA~~~V~a~ 112 (267)
T PRK10128 95 LIPMVDTAEQARQVVSAT 112 (267)
T ss_pred EecCcCCHHHHHHHHHhc
Confidence 996 56788888777765
No 5
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=94.21 E-value=0.23 Score=45.09 Aligned_cols=90 Identities=14% Similarity=0.114 Sum_probs=70.5
Q ss_pred CeEEEEEEecChhhHhhhccccCCCCeEEEecC----CCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccC
Q 025857 109 RRVGSIIEVSTPQELQQLQPADGQAENIVIDLP----DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLG 184 (247)
Q Consensus 109 ~~va~~~~I~~~e~le~a~~~~~~~~~vVv~~~----DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~D 184 (247)
..++++....++.-.|.+... ..||++|+.. |+. -+++++.+++..+...+..+.+.+. ..+-.+|+.|++
T Consensus 12 ~~~G~~~~~~sp~~~e~~a~~--G~D~v~iD~EHg~~~~~--~~~~~~~a~~~~g~~~~VRvp~~~~-~~i~r~LD~Ga~ 86 (249)
T TIGR03239 12 TLIGCWSALGNPITTEVLGLA--GFDWLLLDGEHAPNDVL--TFIPQLMALKGSASAPVVRPPWNEP-VIIKRLLDIGFY 86 (249)
T ss_pred ceEEEEEcCCCcHHHHHHHhc--CCCEEEEecccCCCCHH--HHHHHHHHHhhcCCCcEEECCCCCH-HHHHHHhcCCCC
Confidence 457888999999887777654 4899999975 555 5789998888888788888877654 445779999999
Q ss_pred eEEEe-cCCHHHHHHHHHhh
Q 025857 185 GIVLK-VEDVKAVLALKEYF 203 (247)
Q Consensus 185 GVll~-~~d~~ev~~l~~~~ 203 (247)
||+++ .++.+|++++.+..
T Consensus 87 gIivP~v~taeea~~~v~a~ 106 (249)
T TIGR03239 87 NFLIPFVESAEEAERAVAAT 106 (249)
T ss_pred EEEecCcCCHHHHHHHHHHc
Confidence 99986 57788888877654
No 6
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=94.01 E-value=0.26 Score=44.95 Aligned_cols=90 Identities=17% Similarity=0.161 Sum_probs=70.1
Q ss_pred CeEEEEEEecChhhHhhhccccCCCCeEEEecC----CCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccC
Q 025857 109 RRVGSIIEVSTPQELQQLQPADGQAENIVIDLP----DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLG 184 (247)
Q Consensus 109 ~~va~~~~I~~~e~le~a~~~~~~~~~vVv~~~----DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~D 184 (247)
..+|++....++.-.|.+... ..|+++|+.. ||. -+++++.+++..+...+..+.+.+.+ .+..+|+.|++
T Consensus 19 ~~~g~~~~~~sp~~~e~~a~~--G~D~v~iD~EHg~~~~~--~~~~~i~a~~~~g~~~lVRvp~~~~~-~i~r~LD~Ga~ 93 (256)
T PRK10558 19 VQIGCWSALANPITTEVLGLA--GFDWLVLDGEHAPNDVS--TFIPQLMALKGSASAPVVRVPTNEPV-IIKRLLDIGFY 93 (256)
T ss_pred ceEEEEEcCCCcHHHHHHHhc--CCCEEEEccccCCCCHH--HHHHHHHHHhhcCCCcEEECCCCCHH-HHHHHhCCCCC
Confidence 457888899999877777644 4899999965 555 56888888888888888888877654 44679999999
Q ss_pred eEEEe-cCCHHHHHHHHHhh
Q 025857 185 GIVLK-VEDVKAVLALKEYF 203 (247)
Q Consensus 185 GVll~-~~d~~ev~~l~~~~ 203 (247)
||+++ .++.+|++++.+..
T Consensus 94 giivP~v~tae~a~~~v~a~ 113 (256)
T PRK10558 94 NFLIPFVETAEEARRAVAST 113 (256)
T ss_pred eeeecCcCCHHHHHHHHHHc
Confidence 99986 57788888876654
No 7
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=94.00 E-value=0.27 Score=44.43 Aligned_cols=91 Identities=10% Similarity=0.073 Sum_probs=68.0
Q ss_pred eEEEEEEecChhhHhhhccccCCCCeEEEecCCCeeec---hhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeE
Q 025857 110 RVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIP---AENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGI 186 (247)
Q Consensus 110 ~va~~~~I~~~e~le~a~~~~~~~~~vVv~~~DWtiIP---lENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGV 186 (247)
.+|++....++.-.+.+... ..|+++++..+=. +- +++++.+.+..+...+..++..+.. ....+|+.|+|||
T Consensus 13 ~~g~~~~~~~p~~~e~~~~~--g~D~v~iDlEH~~-~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~-~i~~~Ld~Ga~gI 88 (249)
T TIGR02311 13 QIGLWLGLADPYAAEICAGA--GFDWLLIDGEHAP-NDVRTILSQLQALAPYPSSPVVRPAIGDPV-LIKQLLDIGAQTL 88 (249)
T ss_pred eEEEEEeCCCcHHHHHHHhc--CCCEEEEeccCCC-CCHHHHHHHHHHHHhcCCCcEEECCCCCHH-HHHHHhCCCCCEE
Confidence 47888899998887776654 4899999976432 23 3445555545456788888877665 5678999999999
Q ss_pred EEe-cCCHHHHHHHHHhhc
Q 025857 187 VLK-VEDVKAVLALKEYFD 204 (247)
Q Consensus 187 ll~-~~d~~ev~~l~~~~~ 204 (247)
+++ .+++++++++.+.+.
T Consensus 89 ivP~v~s~e~a~~~v~~~~ 107 (249)
T TIGR02311 89 LVPMIETAEQAEAAVAATR 107 (249)
T ss_pred EecCcCCHHHHHHHHHHcC
Confidence 996 678999988888765
No 8
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=93.82 E-value=0.45 Score=40.74 Aligned_cols=111 Identities=19% Similarity=0.138 Sum_probs=69.6
Q ss_pred chhHHHHHHHhCCcEEEecCcchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeEEE
Q 025857 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~~~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vVv 138 (247)
-++++.++++.|++.|-++-.+....+.+..+..-.| +..+ .-..|.++++++.+... .+++++.
T Consensus 18 ~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~------------~~~i-Gag~v~~~~~~~~a~~~--Ga~~i~~ 82 (190)
T cd00452 18 ALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFP------------EALI-GAGTVLTPEQADAAIAA--GAQFIVS 82 (190)
T ss_pred HHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCC------------CCEE-EEEeCCCHHHHHHHHHc--CCCEEEc
Confidence 4688999999999998875322222222222222111 1111 23356677887777654 4566654
Q ss_pred ecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 025857 139 DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (247)
Q Consensus 139 ~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~ 193 (247)
-..| +.++...+..+..++..+.|.+||+.+ ++.|+|-|-+.|.++
T Consensus 83 p~~~------~~~~~~~~~~~~~~i~gv~t~~e~~~A---~~~Gad~i~~~p~~~ 128 (190)
T cd00452 83 PGLD------PEVVKAANRAGIPLLPGVATPTEIMQA---LELGADIVKLFPAEA 128 (190)
T ss_pred CCCC------HHHHHHHHHcCCcEECCcCCHHHHHHH---HHCCCCEEEEcCCcc
Confidence 4333 345555555566788899999998776 578999999987664
No 9
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=93.03 E-value=0.98 Score=39.02 Aligned_cols=112 Identities=14% Similarity=0.169 Sum_probs=66.4
Q ss_pred CchhHHHHHHHhCCcEEEecCcc--hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCe
Q 025857 58 ESKQVMTAAVERGWNTFVFLSEN--QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~~~--~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~ 135 (247)
.+.+.+..+++.|+|++++...+ .+..+++-+-.. .-|.. ..+.+.+.++++.+... .+++
T Consensus 82 ~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~-------------~~g~~--~~v~v~~~~e~~~~~~~--g~~~ 144 (217)
T cd00331 82 IDPYQIYEARAAGADAVLLIVAALDDEQLKELYELAR-------------ELGME--VLVEVHDEEELERALAL--GAKI 144 (217)
T ss_pred cCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHH-------------HcCCe--EEEEECCHHHHHHHHHc--CCCE
Confidence 45668999999999999853211 122222211110 11222 36677788887776644 4788
Q ss_pred EEEecCCCeeec--h---hhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 025857 136 IVIDLPDWQVIP--A---ENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 136 vVv~~~DWtiIP--l---ENlIA~~q~~~~~lia--~v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
+.+..+|-+..| + +++.+.+. .+..+++ .++++++++.++ +.|+|||++-+
T Consensus 145 i~~t~~~~~~~~~~~~~~~~l~~~~~-~~~pvia~gGI~s~edi~~~~---~~Ga~gvivGs 202 (217)
T cd00331 145 IGINNRDLKTFEVDLNTTERLAPLIP-KDVILVSESGISTPEDVKRLA---EAGADAVLIGE 202 (217)
T ss_pred EEEeCCCccccCcCHHHHHHHHHhCC-CCCEEEEEcCCCCHHHHHHHH---HcCCCEEEECH
Confidence 888876644333 3 33333321 2345665 467889988665 55999998754
No 10
>PRK05826 pyruvate kinase; Provisional
Probab=91.75 E-value=0.78 Score=45.56 Aligned_cols=135 Identities=19% Similarity=0.241 Sum_probs=89.5
Q ss_pred CchhHHHHHHHhCCcEEEecC-cchHHHhhccceeEEeeeeecCCceecCCCC-eEEEEEEecChhhHhhhccccCCCCe
Q 025857 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDR-RVGSIIEVSTPQELQQLQPADGQAEN 135 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~-~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~-~va~~~~I~~~e~le~a~~~~~~~~~ 135 (247)
.+++.+.-||+.|+|+|.+|- .+++.++++. +.+...|. .+.++..|++++.++.+.+.....|-
T Consensus 174 ~D~~~i~~ald~g~d~I~~sfV~saedv~~l~-------------~~l~~~~~~~~~iiakIEt~eav~nldeI~~~~Dg 240 (465)
T PRK05826 174 KDKADIKFAAEQGVDYIAVSFVRSAEDVEEAR-------------RLLREAGCPHAKIIAKIERAEAVDNIDEIIEASDG 240 (465)
T ss_pred hhHHHHHHHHHCCCCEEEECCCCCHHHHHHHH-------------HHHHHcCCcCceEEEEEcCHHHHHhHHHHHHHcCE
Confidence 478889999999999999873 3455555553 22223343 56789999999999988777767888
Q ss_pred EEEecCCCe-eechhhh-------hhcccCCCceEE-E----------EcCCHHHHHHHHHHhhcccCeEEEecCC----
Q 025857 136 IVIDLPDWQ-VIPAENI-------VASFQGSGKTVF-A----------ISKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (247)
Q Consensus 136 vVv~~~DWt-iIPlENl-------IA~~q~~~~~li-a----------~v~~~~EA~val~~LE~G~DGVll~~~d---- 192 (247)
++|-..|=. =+|.|.+ ++.....+.-++ | ...+-.|+--...+..-|+|+|+|..+.
T Consensus 241 ImIgrgDLg~elg~~~v~~~qk~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~ 320 (465)
T PRK05826 241 IMVARGDLGVEIPDEEVPGLQKKIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGK 320 (465)
T ss_pred EEECcchhhhhcCcHhHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCc
Confidence 776544432 2345543 333322232223 3 3456778888888999999999999654
Q ss_pred --HHHHHHHHHhhcc
Q 025857 193 --VKAVLALKEYFDG 205 (247)
Q Consensus 193 --~~ev~~l~~~~~~ 205 (247)
.+.|+-+.+++.+
T Consensus 321 yPveaV~~m~~I~~~ 335 (465)
T PRK05826 321 YPVEAVEAMARICKG 335 (465)
T ss_pred CHHHHHHHHHHHHHH
Confidence 4566666666653
No 11
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=91.53 E-value=0.64 Score=42.41 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=37.3
Q ss_pred CCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhc-ccCeEEEecCCHH
Q 025857 141 PDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQ-GLGGIVLKVEDVK 194 (247)
Q Consensus 141 ~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~-G~DGVll~~~d~~ 194 (247)
.+|...| ..++.. +.++.+++.+.+++-..-+-+++.. |+||+.+-|.|..
T Consensus 130 ~~y~~~~--~y~~~a-n~~~~vi~~IEt~~av~ni~eI~av~gvd~l~iG~~DLs 181 (256)
T PRK10558 130 NMFGTVP--DYFAQS-NKNITVLVQIESQQGVDNVDAIAATEGVDGIFVGPSDLA 181 (256)
T ss_pred cccCChH--HHHHHh-ccccEEEEEECCHHHHHHHHHHhCCCCCcEEEECHHHHH
Confidence 3444344 334443 4567899999999988888888875 8999999998755
No 12
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=91.42 E-value=1.1 Score=38.93 Aligned_cols=93 Identities=23% Similarity=0.331 Sum_probs=62.7
Q ss_pred EEEEEEecChhhHhhhccccCCCCeEEEecCCCee---------echhhhhhcc---cCCCceEEEEcCCHHHH--HHHH
Q 025857 111 VGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQV---------IPAENIVASF---QGSGKTVFAISKTPSEA--QIFL 176 (247)
Q Consensus 111 va~~~~I~~~e~le~a~~~~~~~~~vVv~~~DWti---------IPlENlIA~~---q~~~~~lia~v~~~~EA--~val 176 (247)
.+.|+...+++-++.+.. ...|+++++..| .+ .=+++++..+ +..+..++..+++.+.. +--+
T Consensus 2 s~l~vp~~~~~~~~~a~~--~g~D~vilDlEd-~~~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~~~~Dl 78 (221)
T PF03328_consen 2 SGLFVPANSPKMLEKAAA--SGADFVILDLED-GVPPDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSLDSPHIERDL 78 (221)
T ss_dssp EEEEEESTSHHHHHHHHT--TCSSEEEEESST-TSSGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHh--cCCCEEEEeCcc-cCCcccchhhHHHHHHHHHhhcccccccccceecCCCCCcchhhhhh
Confidence 467778888887777653 368999999888 33 2334444433 33445899999876643 2212
Q ss_pred HHhhcccCeEEEe-cCCHHHHHHHHHhhccc
Q 025857 177 EALEQGLGGIVLK-VEDVKAVLALKEYFDGR 206 (247)
Q Consensus 177 ~~LE~G~DGVll~-~~d~~ev~~l~~~~~~~ 206 (247)
.+|+.|+|||+++ .+++++++++.+.+...
T Consensus 79 ~~l~~g~~gI~lP~ves~~~~~~~~~~~~~~ 109 (221)
T PF03328_consen 79 EALDAGADGIVLPKVESAEDARQAVAALRYP 109 (221)
T ss_dssp HHHHTTSSEEEETT--SHHHHHHHHHHHSHT
T ss_pred hhcccCCCeeeccccCcHHHHHHHHHHHhhc
Confidence 2999999999997 56788998888887653
No 13
>PTZ00300 pyruvate kinase; Provisional
Probab=91.21 E-value=1.5 Score=43.52 Aligned_cols=136 Identities=17% Similarity=0.169 Sum_probs=90.5
Q ss_pred eCchhHHHHHHHhCCcEEEecC-cchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCe
Q 025857 57 TESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (247)
Q Consensus 57 ~~~KevvT~ALEsG~d~~v~~~-~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~ 135 (247)
+.|++.+.-|++.|+|.|.++- .+++.++++.+.. ...|..+.++.+|++++.++.+.+-....|-
T Consensus 147 ekD~~dI~~ald~gvd~I~~SfVrsaeDv~~vr~~l-------------~~~~~~~~IiaKIEt~eav~nldeI~~~~Dg 213 (454)
T PTZ00300 147 AKDCADLQFGVEQGVDMIFASFIRSAEQVGEVRKAL-------------GAKGGDIMIICKIENHQGVQNIDSIIEESDG 213 (454)
T ss_pred hhhHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHH-------------HhcCCCceEEEEECCHHHHHhHHHHHHhCCE
Confidence 3578889999999999988752 2244444332222 1124456789999999999999877788898
Q ss_pred EEEecCCC-eeechhhhhh-------cccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC----
Q 025857 136 IVIDLPDW-QVIPAENIVA-------SFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (247)
Q Consensus 136 vVv~~~DW-tiIPlENlIA-------~~q~~~~~lia~-----------v~~~~EA~val~~LE~G~DGVll~~~d---- 192 (247)
++|-..|= -=||.|++-+ .....+.-+|.. ..+-.|+--...+.--|+|+|+|..+.
T Consensus 214 ImVaRGDLgvei~~e~vp~~Qk~Ii~~~~~~gkpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~DavMLS~ETA~G~ 293 (454)
T PTZ00300 214 IMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGK 293 (454)
T ss_pred EEEecchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcEEEEechhcCCC
Confidence 87776553 3477777543 222222223321 225567777888899999999997765
Q ss_pred --HHHHHHHHHhhcc
Q 025857 193 --VKAVLALKEYFDG 205 (247)
Q Consensus 193 --~~ev~~l~~~~~~ 205 (247)
.+.|+-+.+++.+
T Consensus 294 yP~eaV~~m~~I~~~ 308 (454)
T PTZ00300 294 YPNEVVQYMARICLE 308 (454)
T ss_pred CHHHHHHHHHHHHHH
Confidence 4566666666643
No 14
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=90.84 E-value=0.9 Score=41.93 Aligned_cols=131 Identities=15% Similarity=0.187 Sum_probs=84.9
Q ss_pred chhHHHHHHHhCCcEEEecC-cchHHHhhccceeEEeeeeecC---C-----------ceecCCCCeEEEEEEecChhhH
Q 025857 59 SKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKE---G-----------EVYDSGDRRVGSIIEVSTPQEL 123 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~~-~~~e~~~~lg~i~~i~pl~i~~---g-----------~~~~~~g~~va~~~~I~~~e~l 123 (247)
+...++-+|+.|+++||+|- +.+|.++++-+-.+..|+-..+ + +.+..-+..+.+++.|++++.+
T Consensus 79 ~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~~~~vi~qiEt~~a~ 158 (267)
T PRK10128 79 SKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQANDSLCLLVQVESKTAL 158 (267)
T ss_pred CHHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhccccEEEEEECCHHHH
Confidence 56788999999999999985 5578888776666666643221 0 1122235578899999999998
Q ss_pred hhhccccC--CCCeEEEecC----------CCe---ee-chhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEE
Q 025857 124 QQLQPADG--QAENIVIDLP----------DWQ---VI-PAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIV 187 (247)
Q Consensus 124 e~a~~~~~--~~~~vVv~~~----------DWt---iI-PlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVl 187 (247)
+.+.+..+ ..+.+.+-.. +|. +. =++.++++.++.+..+-..+.+.++|+-+ +++|.+=|+
T Consensus 159 ~n~~~I~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk~~G~~~~~~~~a~~~---~~~G~~~v~ 235 (267)
T PRK10128 159 DNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAVDPDMAQKC---LAWGANFVA 235 (267)
T ss_pred HhHHHHhCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEcCCCHHHHHHH---HHcCCcEEE
Confidence 88755443 3555554321 122 11 13566666655554444456888887754 689999888
Q ss_pred EecCC
Q 025857 188 LKVED 192 (247)
Q Consensus 188 l~~~d 192 (247)
+..|-
T Consensus 236 ~g~D~ 240 (267)
T PRK10128 236 VGVDT 240 (267)
T ss_pred EChHH
Confidence 77764
No 15
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=90.78 E-value=6.6 Score=34.09 Aligned_cols=115 Identities=20% Similarity=0.133 Sum_probs=70.9
Q ss_pred hhHHHHHHHhCCcEEEecC-cchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeEEE
Q 025857 60 KQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~-~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vVv 138 (247)
++++.++.+.|+.++.+.+ ++.+.+++...+.++.++..|-. +..+ ++. .+.++.+.+... .++.+++
T Consensus 26 ~~~a~a~~~~G~~~~~~~~~~~i~~i~~~~~~Pil~~~~~d~~------~~~~--~~~-~~~~~v~~a~~a--Gad~I~~ 94 (221)
T PRK01130 26 AAMALAAVQGGAVGIRANGVEDIKAIRAVVDVPIIGIIKRDYP------DSEV--YIT-PTLKEVDALAAA--GADIIAL 94 (221)
T ss_pred HHHHHHHHHCCCeEEEcCCHHHHHHHHHhCCCCEEEEEecCCC------CCCc--eEC-CCHHHHHHHHHc--CCCEEEE
Confidence 7788888899999988753 34556666556655533221100 1011 110 123444444433 4677776
Q ss_pred ecCC---CeeechhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 025857 139 DLPD---WQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (247)
Q Consensus 139 ~~~D---WtiIPlENlIA~~q~-~~~~lia~v~~~~EA~val~~LE~G~DGVll 188 (247)
.... ..-..++.++..++. .+..++..+.+.+|++ ...+.|+|-+.+
T Consensus 95 d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~t~ee~~---~a~~~G~d~i~~ 145 (221)
T PRK01130 95 DATLRPRPDGETLAELVKRIKEYPGQLLMADCSTLEEGL---AAQKLGFDFIGT 145 (221)
T ss_pred eCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCCCHHHHH---HHHHcCCCEEEc
Confidence 5442 111456788888877 7788999999999986 567889998876
No 16
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=90.32 E-value=0.6 Score=42.42 Aligned_cols=131 Identities=11% Similarity=0.190 Sum_probs=81.8
Q ss_pred CchhHHHHHHHhCCcEEEecC-cchHHHhhccceeEEeeeeecC-------------CceecCCCCeEEEEEEecChhhH
Q 025857 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKE-------------GEVYDSGDRRVGSIIEVSTPQEL 123 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~-~~~e~~~~lg~i~~i~pl~i~~-------------g~~~~~~g~~va~~~~I~~~e~l 123 (247)
.+...++.+|+.|+++|++|- +++|.++++-+-.+..|+-..+ .+.++.-+..+.++..|++++.+
T Consensus 72 ~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~~IEt~~av 151 (249)
T TIGR03239 72 NEPVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQIESQKGV 151 (249)
T ss_pred CCHHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccccEEEEEECCHHHH
Confidence 367889999999999999985 5577777776666666633211 11223335567789999999998
Q ss_pred hhhcccc--CCCCeEEEecCC----------Ceeec----hhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEE
Q 025857 124 QQLQPAD--GQAENIVIDLPD----------WQVIP----AENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIV 187 (247)
Q Consensus 124 e~a~~~~--~~~~~vVv~~~D----------WtiIP----lENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVl 187 (247)
+.+.+.. ...+.+.+-..| +.--+ .+.++.+....+...-....+.++++-+ +++|.+=++
T Consensus 152 ~n~~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~~g~~~~~~~~~~~~---~~~G~~~~~ 228 (249)
T TIGR03239 152 DNVDEIAAVDGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGILAPVEADARRY---LEWGATFVA 228 (249)
T ss_pred HhHHHHhCCCCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEcCCCHHHHHHH---HHcCCCEEE
Confidence 8775544 346666654322 22112 2333444444443334445777766655 689998777
Q ss_pred EecC
Q 025857 188 LKVE 191 (247)
Q Consensus 188 l~~~ 191 (247)
+..|
T Consensus 229 ~~~D 232 (249)
T TIGR03239 229 VGSD 232 (249)
T ss_pred EhHH
Confidence 7665
No 17
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=90.15 E-value=0.89 Score=39.24 Aligned_cols=43 Identities=26% Similarity=0.193 Sum_probs=34.7
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhcc
Q 025857 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDG 205 (247)
Q Consensus 160 ~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~~~ 205 (247)
.+|..++.|.+||+ ++++.|+|+|+|+.-+|++++++.+.+..
T Consensus 81 ~~I~VEv~~~ee~~---ea~~~g~d~I~lD~~~~~~~~~~v~~l~~ 123 (169)
T PF01729_consen 81 KKIEVEVENLEEAE---EALEAGADIIMLDNMSPEDLKEAVEELRE 123 (169)
T ss_dssp SEEEEEESSHHHHH---HHHHTT-SEEEEES-CHHHHHHHHHHHHH
T ss_pred ceEEEEcCCHHHHH---HHHHhCCCEEEecCcCHHHHHHHHHHHhh
Confidence 35999999999877 56779999999999999999888886643
No 18
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=89.62 E-value=0.77 Score=42.59 Aligned_cols=53 Identities=9% Similarity=0.123 Sum_probs=41.3
Q ss_pred hhhhhcccCC---CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 025857 149 ENIVASFQGS---GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (247)
Q Consensus 149 ENlIA~~q~~---~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~~ 204 (247)
++.|.++... ..+|..++.|.+||+.++ |.|+|.|+|+.-+++++++..+.+.
T Consensus 169 ~~~v~~~k~~~p~~~~I~VEv~tleea~~A~---~~GaDiI~LDn~~~e~l~~~v~~~~ 224 (273)
T PRK05848 169 KEFIQHARKNIPFTAKIEIECESLEEAKNAM---NAGADIVMCDNMSVEEIKEVVAYRN 224 (273)
T ss_pred HHHHHHHHHhCCCCceEEEEeCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHhh
Confidence 4455444442 257999999999998654 7999999999999999988888653
No 19
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=89.58 E-value=0.46 Score=38.95 Aligned_cols=53 Identities=21% Similarity=0.285 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHhhcccCeEEEec---CC----------HHHHHHHHHhhcccccccceeeeEEEE
Q 025857 167 KTPSEAQIFLEALEQGLGGIVLKV---ED----------VKAVLALKEYFDGRNEVSNLLSLMKAT 219 (247)
Q Consensus 167 ~~~~EA~val~~LE~G~DGVll~~---~d----------~~ev~~l~~~~~~~~~~~~~l~L~~At 219 (247)
..-=+....+.+|++|+|||++.. +| ..-+..+++++++...+.+++.+....
T Consensus 37 ~Grv~~~~il~Af~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~~Gi~~eRv~~~~~~ 102 (124)
T PF02662_consen 37 SGRVDPEFILRAFEKGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEELGIEPERVRLYWIS 102 (124)
T ss_pred CCccCHHHHHHHHHcCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhHeEEEEeC
Confidence 344567889999999999999944 33 223566777777766677777765543
No 20
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=88.86 E-value=1.6 Score=37.86 Aligned_cols=109 Identities=17% Similarity=0.133 Sum_probs=56.1
Q ss_pred hhHHHHHHHhCCcEEEec-------C--cchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhcccc
Q 025857 60 KQVMTAAVERGWNTFVFL-------S--ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPAD 130 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~-------~--~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~ 130 (247)
.+.+..|.+.|++.++.. . ...+.++.+.+. + ..-..+.+.+.++...+...
T Consensus 82 ~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~-----------------g-~~~iiv~v~t~~ea~~a~~~- 142 (219)
T cd04729 82 IEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEE-----------------Y-NCLLMADISTLEEALNAAKL- 142 (219)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHH-----------------h-CCeEEEECCCHHHHHHHHHc-
Confidence 347899999999976662 1 112222222111 1 11133455667665554433
Q ss_pred CCCCeEEEecCCCe------eechhhhhhcccC-CCceEEEE--cCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 131 GQAENIVIDLPDWQ------VIPAENIVASFQG-SGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 131 ~~~~~vVv~~~DWt------iIPlENlIA~~q~-~~~~lia~--v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
.++++.+...+.+ ..|--+.+.++.+ .+..+++. +++.++++.++ +.|+|||++-+.
T Consensus 143 -G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l---~~GadgV~vGsa 208 (219)
T cd04729 143 -GFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKAL---ELGADAVVVGSA 208 (219)
T ss_pred -CCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHH---HCCCCEEEEchH
Confidence 5788765432221 1121234443332 23445544 35666666554 579999998753
No 21
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=88.63 E-value=1 Score=42.74 Aligned_cols=134 Identities=19% Similarity=0.286 Sum_probs=83.3
Q ss_pred CchhHHHHHHHhCCcEEEecC-cchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeE
Q 025857 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~-~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~v 136 (247)
.|++.+.-|++.|+|.|-..- ..++.++++.+ ++...|+.+.++..|.+++.++.+.+.....|-+
T Consensus 177 kD~~di~fa~~~~vD~IalSFVrsa~dV~~lr~-------------~l~~~~~~~~iiaKIE~~~~v~nl~eI~~~sDgi 243 (348)
T PF00224_consen 177 KDKEDIKFAVENGVDFIALSFVRSAEDVKELRK-------------ILGEKGKDIKIIAKIETKEAVENLDEILEASDGI 243 (348)
T ss_dssp HHHHHHHHHHHTT-SEEEETTE-SHHHHHHHHH-------------HHTCTTTTSEEEEEE-SHHHHHTHHHHHHHSSEE
T ss_pred HHHHHHHHHHHcCCCEEEecCCCchHHHHHHHH-------------HhhhcCcccceeeccccHHHHhhHHHHhhhcCeE
Confidence 579999999999999876531 12444443322 2334456677899999999999988777788988
Q ss_pred EEecCC------Ceeech--hhhhhcccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC-----
Q 025857 137 VIDLPD------WQVIPA--ENIVASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED----- 192 (247)
Q Consensus 137 Vv~~~D------WtiIPl--ENlIA~~q~~~~~lia~-----------v~~~~EA~val~~LE~G~DGVll~~~d----- 192 (247)
+|...| .+-+|+ +.||+.....+.-+|.. ..+-.|.--...+..-|+|||+|..+.
T Consensus 244 miaRGDLg~e~~~e~v~~~Qk~ii~~~~~~~kpvi~ATq~Lesm~~~~~PTRaEv~Dv~nav~dg~d~vmLs~ETa~G~~ 323 (348)
T PF00224_consen 244 MIARGDLGVEIPFEKVPIIQKRIIKKCNAAGKPVIVATQMLESMIKNPIPTRAEVSDVANAVLDGADAVMLSGETAIGKY 323 (348)
T ss_dssp EEEHHHHHHHSTGGGHHHHHHHHHHHHHHHT-EEEEESSSSGGGGTSSS--HHHHHHHHHHHHHT-SEEEESHHHHTSSS
T ss_pred EEecCCcceeeeHHHHHHHHHHHHHHHHHhCCCeeehhHhHHHHHhCCCCchHHHhhHHHHHHcCCCEEEecCCcCCCCC
Confidence 887443 334443 23454444434344442 226677777888888999999999442
Q ss_pred -HHHHHHHHHhhc
Q 025857 193 -VKAVLALKEYFD 204 (247)
Q Consensus 193 -~~ev~~l~~~~~ 204 (247)
.+.|+-+.+++.
T Consensus 324 p~~~v~~~~~i~~ 336 (348)
T PF00224_consen 324 PVEAVKTMARIIR 336 (348)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 355555666554
No 22
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=88.54 E-value=3 Score=37.92 Aligned_cols=116 Identities=12% Similarity=0.157 Sum_probs=63.1
Q ss_pred hhHHHHHHHhCCcEEEecCcchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEe-cChhhHhhhccccCCCCeEEE
Q 025857 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV-STPQELQQLQPADGQAENIVI 138 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I-~~~e~le~a~~~~~~~~~vVv 138 (247)
.+.+..+.+.|++++++++.-.+...++- ...+..|...+.++.- ++.+.++.........-|++-
T Consensus 105 e~f~~~~~~aGvdgviipDlp~ee~~~~~-------------~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs 171 (256)
T TIGR00262 105 EEFYAKCKEVGVDGVLVADLPLEESGDLV-------------EAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVS 171 (256)
T ss_pred HHHHHHHHHcCCCEEEECCCChHHHHHHH-------------HHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEE
Confidence 67899999999999999853222221110 0112233333333332 334555555554433444332
Q ss_pred e--cCCC--ee-echhhhhhcccCC-CceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 139 D--LPDW--QV-IPAENIVASFQGS-GKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 139 ~--~~DW--ti-IPlENlIA~~q~~-~~~lia--~v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
. +++= +. -++...|+.+.+. +..|+. .+++.++++. +.+.|+|||++-+.
T Consensus 172 ~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~---~~~~GADgvVvGSa 229 (256)
T TIGR00262 172 RAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQ---AIDAGADGVIVGSA 229 (256)
T ss_pred CCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHH---HHHcCCCEEEECHH
Confidence 1 1221 12 2456777776542 333343 3567888775 77899999999764
No 23
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=88.38 E-value=8 Score=33.39 Aligned_cols=129 Identities=16% Similarity=0.153 Sum_probs=67.3
Q ss_pred EEEEe--CchhHHHHHHHhCCcEEEecCc---c----hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhH
Q 025857 53 VWIWT--ESKQVMTAAVERGWNTFVFLSE---N----QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQEL 123 (247)
Q Consensus 53 vWiW~--~~KevvT~ALEsG~d~~v~~~~---~----~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~l 123 (247)
+|+.- .+-+-+..+++.|+|.+++.+. + .+.++++++-.++-++-+.++......+. ..++.+.+
T Consensus 76 v~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~------~~~~~~~~ 149 (234)
T cd04732 76 VQVGGGIRSLEDIERLLDLGVSRVIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWL------ETSEVSLE 149 (234)
T ss_pred EEEeCCcCCHHHHHHHHHcCCCEEEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCe------eecCCCHH
Confidence 55544 5788899999999999998642 2 33444555534444444444443322110 11122222
Q ss_pred hhhccccC-CCCeEEEecCC----Ceeechhhhhhcc-cCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 124 QQLQPADG-QAENIVIDLPD----WQVIPAENIVASF-QGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 124 e~a~~~~~-~~~~vVv~~~D----WtiIPlENlIA~~-q~~~~~lia--~v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
+.+..... .++.+++...+ -+-+++| ++.++ +..+..+++ .+++.++++.++. .|+|||++.+-
T Consensus 150 ~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~-~i~~i~~~~~ipvi~~GGi~~~~di~~~~~---~Ga~gv~vg~~ 221 (234)
T cd04732 150 ELAKRFEELGVKAIIYTDISRDGTLSGPNFE-LYKELAAATGIPVIASGGVSSLDDIKALKE---LGVAGVIVGKA 221 (234)
T ss_pred HHHHHHHHcCCCEEEEEeecCCCccCCCCHH-HHHHHHHhcCCCEEEecCCCCHHHHHHHHH---CCCCEEEEeHH
Confidence 33332222 36666666331 1112222 22222 222344444 3588898887765 49999998653
No 24
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=88.18 E-value=2.5 Score=36.65 Aligned_cols=110 Identities=20% Similarity=0.168 Sum_probs=57.9
Q ss_pred chhHHHHHHHhCCcEEEecC--------cc-hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccc
Q 025857 59 SKQVMTAAVERGWNTFVFLS--------EN-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~~--------~~-~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~ 129 (247)
..+.+..|.|.|+|.++..- +. .+.++...+. .+.. +...+.+.++...+..
T Consensus 77 ~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~----------------~~i~--vi~~v~t~ee~~~a~~- 137 (221)
T PRK01130 77 TLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY----------------PGQL--LMADCSTLEEGLAAQK- 137 (221)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC----------------CCCe--EEEeCCCHHHHHHHHH-
Confidence 45668999999999555311 11 2222222110 1211 3345667777655443
Q ss_pred cCCCCeEEEecCCCe------eechhhhhhcccCC-CceEEEE--cCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 130 DGQAENIVIDLPDWQ------VIPAENIVASFQGS-GKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 130 ~~~~~~vVv~~~DWt------iIPlENlIA~~q~~-~~~lia~--v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
..++++.+...+.+ .-|.-+++.++.+. +..+++. ++++++++. +++.|+|||++-+.
T Consensus 138 -~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~---~l~~GadgV~iGsa 204 (221)
T PRK01130 138 -LGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRINTPEQAKK---ALELGAHAVVVGGA 204 (221)
T ss_pred -cCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHHHH---HHHCCCCEEEEchH
Confidence 24788766432221 12223344444322 3344543 457777765 55689999998754
No 25
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=87.98 E-value=5.1 Score=36.41 Aligned_cols=116 Identities=16% Similarity=0.187 Sum_probs=68.9
Q ss_pred chhHHHHHHHhCCcEEEecCcc--hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeE
Q 025857 59 SKQVMTAAVERGWNTFVFLSEN--QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~~~~--~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~v 136 (247)
+.-.+..|.+.|+|.+.+--.. .+..+++-+... .-|. -+++++.+.++++.+... .++++
T Consensus 122 ~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~-------------~lGl--~~lvevh~~~E~~~A~~~--gadiI 184 (260)
T PRK00278 122 DPYQIYEARAAGADAILLIVAALDDEQLKELLDYAH-------------SLGL--DVLVEVHDEEELERALKL--GAPLI 184 (260)
T ss_pred CHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHH-------------HcCC--eEEEEeCCHHHHHHHHHc--CCCEE
Confidence 4456899999999998864211 112222111111 1122 267889999988777644 56777
Q ss_pred EEecCCCeeec-----hhhhhhcccCCCceEEEEc--CCHHHHHHHHHHhhcccCeEEEec-----CCHHH
Q 025857 137 VIDLPDWQVIP-----AENIVASFQGSGKTVFAIS--KTPSEAQIFLEALEQGLGGIVLKV-----EDVKA 195 (247)
Q Consensus 137 Vv~~~DWtiIP-----lENlIA~~q~~~~~lia~v--~~~~EA~val~~LE~G~DGVll~~-----~d~~e 195 (247)
-++.+|=+.-+ .+.++..+.+ ...+|++. .++++++.++ +.|+|||++-+ +||.+
T Consensus 185 gin~rdl~~~~~d~~~~~~l~~~~p~-~~~vIaegGI~t~ed~~~~~---~~Gad~vlVGsaI~~~~dp~~ 251 (260)
T PRK00278 185 GINNRNLKTFEVDLETTERLAPLIPS-DRLVVSESGIFTPEDLKRLA---KAGADAVLVGESLMRADDPGA 251 (260)
T ss_pred EECCCCcccccCCHHHHHHHHHhCCC-CCEEEEEeCCCCHHHHHHHH---HcCCCEEEECHHHcCCCCHHH
Confidence 77765543332 3444444322 23566654 6899988766 56999998744 56653
No 26
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=87.03 E-value=6.5 Score=35.73 Aligned_cols=110 Identities=15% Similarity=0.145 Sum_probs=75.2
Q ss_pred chhHHHHHHHhCCcEEEecC------cchH---HHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccc
Q 025857 59 SKQVMTAAVERGWNTFVFLS------ENQQ---LAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~~------~~~e---~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~ 129 (247)
-.++.....+.|++++-+.. ++.+ .+++--++.++.. + -|.++-+++.+...
T Consensus 72 ~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v~iPvl~k------------d-------fi~~~~qi~~a~~~ 132 (260)
T PRK00278 72 PVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAVSLPVLRK------------D-------FIIDPYQIYEARAA 132 (260)
T ss_pred HHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhcCCCEEee------------e-------ecCCHHHHHHHHHc
Confidence 47888888999999977622 1233 3333333333221 1 35566666665533
Q ss_pred cCCCCeEEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 025857 130 DGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (247)
Q Consensus 130 ~~~~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d 192 (247)
++|.+.+...+-..--++.++...+.-+..+++++.|.+|++.+. +.|+|=|-+.+.|
T Consensus 133 --GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~---~~gadiIgin~rd 190 (260)
T PRK00278 133 --GADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERAL---KLGAPLIGINNRN 190 (260)
T ss_pred --CCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHH---HcCCCEEEECCCC
Confidence 578888887775544588899888888889999999999997754 6799988887643
No 27
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=86.48 E-value=1.5 Score=40.96 Aligned_cols=42 Identities=12% Similarity=0.063 Sum_probs=36.9
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 025857 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (247)
Q Consensus 160 ~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~~ 204 (247)
.+|..+|.|.+||+.+ ++.|+|.|+|+.=+|+++++..+++.
T Consensus 195 ~kIeVEv~tleea~ea---~~~gaDiI~LDn~s~e~l~~av~~~~ 236 (281)
T PRK06106 195 VKIEVEVDTLDQLEEA---LELGVDAVLLDNMTPDTLREAVAIVA 236 (281)
T ss_pred CcEEEEeCCHHHHHHH---HHcCCCEEEeCCCCHHHHHHHHHHhC
Confidence 5799999999998865 58999999999999999988888664
No 28
>PLN02591 tryptophan synthase
Probab=85.63 E-value=3.3 Score=37.87 Aligned_cols=117 Identities=11% Similarity=0.122 Sum_probs=62.0
Q ss_pred chhHHHHHHHhCCcEEEecCcchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEE-ecChhhHhhhccccCCCCeEE
Q 025857 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIE-VSTPQELQQLQPADGQAENIV 137 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~~~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~-I~~~e~le~a~~~~~~~~~vV 137 (247)
-.+.+..|-|+|+|++++|+=-.|...++... .+..|.....++. -++++.++.++......=|+|
T Consensus 95 ~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~-------------~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~V 161 (250)
T PLN02591 95 IDKFMATIKEAGVHGLVVPDLPLEETEALRAE-------------AAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLV 161 (250)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH-------------HHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEe
Confidence 46789999999999999985111211111100 0111222222221 223455566665544433533
Q ss_pred Ee--cCCCe-eec--hhhhhhcccC-CCceEE--EEcCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 138 ID--LPDWQ-VIP--AENIVASFQG-SGKTVF--AISKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 138 v~--~~DWt-iIP--lENlIA~~q~-~~~~li--a~v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
=. .++.+ -+| +++.++.+.+ .+..|+ ..+++.++++. ++++|+|||++-+.
T Consensus 162 s~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~---~~~~GADGvIVGSa 220 (250)
T PLN02591 162 SSTGVTGARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQ---IAGWGADGVIVGSA 220 (250)
T ss_pred eCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHH---HHhcCCCEEEECHH
Confidence 21 12221 223 4666666654 233333 34578888875 78899999999873
No 29
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=85.59 E-value=1.9 Score=40.59 Aligned_cols=54 Identities=13% Similarity=0.047 Sum_probs=41.7
Q ss_pred hhhhhhcccCC---CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 025857 148 AENIVASFQGS---GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (247)
Q Consensus 148 lENlIA~~q~~---~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~~ 204 (247)
+++-|+++... ..+|..+|.|.+||+.++ +.|+|.|+|+.=+|+++++..+++.
T Consensus 183 i~~av~~~r~~~~~~~kIeVEv~tleea~~a~---~agaDiImLDnmspe~l~~av~~~~ 239 (290)
T PRK06559 183 VQKAIAQARAYAPFVKMVEVEVESLAAAEEAA---AAGADIIMLDNMSLEQIEQAITLIA 239 (290)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHhc
Confidence 44444444332 358999999999988755 7899999999999999988887654
No 30
>PTZ00066 pyruvate kinase; Provisional
Probab=85.38 E-value=6.9 Score=39.66 Aligned_cols=135 Identities=17% Similarity=0.209 Sum_probs=89.1
Q ss_pred CchhHH-HHHHHhCCcEEEecC-cchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCe
Q 025857 58 ESKQVM-TAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (247)
Q Consensus 58 ~~Kevv-T~ALEsG~d~~v~~~-~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~ 135 (247)
.||+.+ .-|++-|+|.|-..- .+++.++++.++ ++..|+.+..+..|++++.++.+.+-....|-
T Consensus 210 kD~~dI~~f~~~~~vD~IalSFVr~a~DI~~~r~~-------------l~~~g~~~~IiAKIE~~~av~NldeIl~~sDG 276 (513)
T PTZ00066 210 KDKNDILNFAIPMGCDFIALSFVQSADDVRLCRQL-------------LGERGRHIKIIPKIENIEGLINFDEILAESDG 276 (513)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHH-------------HHhCCCCceEEEEECCHHHHHHHHHHHHhcCE
Confidence 467775 899999999644220 123333333221 22334556789999999999999888888999
Q ss_pred EEEecCCCee-echhhhh-------hcccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC----
Q 025857 136 IVIDLPDWQV-IPAENIV-------ASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (247)
Q Consensus 136 vVv~~~DWti-IPlENlI-------A~~q~~~~~lia~-----------v~~~~EA~val~~LE~G~DGVll~~~d---- 192 (247)
++|-..|=-+ ||+|.+- ......+.-+|.. ..+-.|+--.+.+..-|+|||+|..+.
T Consensus 277 IMVARGDLGvEip~e~vp~~QK~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVaNAV~DG~DavMLSgETA~G~ 356 (513)
T PTZ00066 277 IMVARGDLGMEIPPEKVFLAQKMMISKCNVAGKPVITATQMLESMIKNPRPTRAESTDVANAVLDGTDCVMLSGETANGK 356 (513)
T ss_pred EEEEccccccccChHHcchHHHHHHHHHHHhCCCEEEechhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEecchhcCCc
Confidence 8887777665 7888753 2222222223321 235677777888999999999998775
Q ss_pred --HHHHHHHHHhhcc
Q 025857 193 --VKAVLALKEYFDG 205 (247)
Q Consensus 193 --~~ev~~l~~~~~~ 205 (247)
.+.|+-+.+++.+
T Consensus 357 yPveaV~~m~~I~~~ 371 (513)
T PTZ00066 357 FPVEAVNIMAKICFE 371 (513)
T ss_pred CHHHHHHHHHHHHHH
Confidence 4566667776654
No 31
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=85.18 E-value=0.99 Score=42.12 Aligned_cols=43 Identities=21% Similarity=0.353 Sum_probs=34.4
Q ss_pred echhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 146 IPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 146 IPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
.|.+.++..++..+.+++..|.|+++|+. +++.|+|+|++.--
T Consensus 123 ~p~~~~i~~l~~~gi~v~~~v~s~~~A~~---a~~~G~D~iv~qG~ 165 (330)
T PF03060_consen 123 LPPPEVIERLHAAGIKVIPQVTSVREARK---AAKAGADAIVAQGP 165 (330)
T ss_dssp SC-HHHHHHHHHTT-EEEEEESSHHHHHH---HHHTT-SEEEEE-T
T ss_pred cchHHHHHHHHHcCCccccccCCHHHHHH---hhhcCCCEEEEecc
Confidence 47788899999999999999999999986 47789999999853
No 32
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=84.83 E-value=3.8 Score=37.72 Aligned_cols=117 Identities=8% Similarity=0.057 Sum_probs=61.6
Q ss_pred chhHHHHHHHhCCcEEEecCcchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecC-hhhHhhhccccCCCCeEE
Q 025857 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST-PQELQQLQPADGQAENIV 137 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~~~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~-~e~le~a~~~~~~~~~vV 137 (247)
-.+.+..|-++|+|++++|+.-.+...++-.. .+..|.....++.-++ .+.++.++......=|+|
T Consensus 108 ~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~-------------~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~v 174 (263)
T CHL00200 108 INKFIKKISQAGVKGLIIPDLPYEESDYLISV-------------CNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLV 174 (263)
T ss_pred HHHHHHHHHHcCCeEEEecCCCHHHHHHHHHH-------------HHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEE
Confidence 46789999999999999985212222211110 1122323233333333 455555554443333422
Q ss_pred Ee--cCCC-eeec--hhhhhhcccCC-C--ceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 138 ID--LPDW-QVIP--AENIVASFQGS-G--KTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 138 v~--~~DW-tiIP--lENlIA~~q~~-~--~~lia~v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
=. .++= +-+| ++++++.+.+. + .-+--.+++.++|+. +.+.|+|||++-+.
T Consensus 175 S~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~---~~~~GADGvVVGSa 233 (263)
T CHL00200 175 STTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQ---IKGWNINGIVIGSA 233 (263)
T ss_pred cCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHH---HHhcCCCEEEECHH
Confidence 11 1111 1223 56666665431 2 122234577888776 67899999998775
No 33
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=84.68 E-value=18 Score=31.45 Aligned_cols=116 Identities=18% Similarity=0.121 Sum_probs=66.3
Q ss_pred hhHHHHHHHhCCcEEEecC-cchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeEEE
Q 025857 60 KQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~-~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vVv 138 (247)
.++..++++.|+..+-+.. ++.+.+++..++.++.++.. + ++.....++. +.++++.+... .++.+++
T Consensus 30 ~~~a~~~~~~G~~~~~~~~~~~~~~i~~~~~iPil~~~~~-~---~~~~~~~ig~-----~~~~~~~a~~a--Gad~I~~ 98 (219)
T cd04729 30 AAMALAAVQGGAVGIRANGVEDIRAIRARVDLPIIGLIKR-D---YPDSEVYITP-----TIEEVDALAAA--GADIIAL 98 (219)
T ss_pred HHHHHHHHHCCCeEEEcCCHHHHHHHHHhCCCCEEEEEec-C---CCCCCceeCC-----CHHHHHHHHHc--CCCEEEE
Confidence 6788889999998865543 44566666556655432111 1 0000101111 22344444433 4567777
Q ss_pred ecCC---CeeechhhhhhcccCCC-ceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 025857 139 DLPD---WQVIPAENIVASFQGSG-KTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (247)
Q Consensus 139 ~~~D---WtiIPlENlIA~~q~~~-~~lia~v~~~~EA~val~~LE~G~DGVll~ 189 (247)
.... ..--.+++++.++.... ..++..+.+.+||+. +.+.|+|.+.+.
T Consensus 99 ~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v~t~~ea~~---a~~~G~d~i~~~ 150 (219)
T cd04729 99 DATDRPRPDGETLAELIKRIHEEYNCLLMADISTLEEALN---AAKLGFDIIGTT 150 (219)
T ss_pred eCCCCCCCCCcCHHHHHHHHHHHhCCeEEEECCCHHHHHH---HHHcCCCEEEcc
Confidence 5432 22225567776655544 677888899999854 556799998764
No 34
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.45 E-value=2.1 Score=39.88 Aligned_cols=56 Identities=16% Similarity=0.076 Sum_probs=45.0
Q ss_pred chhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhcc
Q 025857 147 PAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDG 205 (247)
Q Consensus 147 PlENlIA~~q~~--~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~~~ 205 (247)
.+++-|+++... ..+|..+|.+.+||+.+ ++.|+|.|+|+.=+|+++++..+++..
T Consensus 168 ~i~~av~~~r~~~~~~kIeVEv~~leea~~a---~~agaDiI~LDn~~~e~l~~~v~~l~~ 225 (278)
T PRK08385 168 PLEEAIRRAKEFSVYKVVEVEVESLEDALKA---AKAGADIIMLDNMTPEEIREVIEALKR 225 (278)
T ss_pred HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHH---HHcCcCEEEECCCCHHHHHHHHHHHHh
Confidence 466666665543 25799999999999876 579999999999999999988887643
No 35
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=84.29 E-value=3.6 Score=38.52 Aligned_cols=43 Identities=16% Similarity=0.103 Sum_probs=37.6
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 025857 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (247)
Q Consensus 159 ~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~~ 204 (247)
..+|..++.|.+||+.+ ++.|+|.|+|+.=+|+++++..+++.
T Consensus 189 ~~kIeVEv~tleqa~ea---~~agaDiI~LDn~~~e~l~~av~~~~ 231 (284)
T PRK06096 189 EKKIVVEADTPKEAIAA---LRAQPDVLQLDKFSPQQATEIAQIAP 231 (284)
T ss_pred CCCEEEECCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHhh
Confidence 35799999999999866 58999999999999999999888764
No 36
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=83.89 E-value=10 Score=36.03 Aligned_cols=136 Identities=13% Similarity=0.097 Sum_probs=73.0
Q ss_pred eeccCCCCCCCCCcEEEEEeCchhHHHHHHHhCCcEEEecCcchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEe
Q 025857 38 TMCSVSNSSSSKPKRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV 117 (247)
Q Consensus 38 ~~~~~~~~~~~~~K~vWiW~~~KevvT~ALEsG~d~~v~~~~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I 117 (247)
.|..|+.-++-....=|.|--...-+.+-.++++|-+|+.+.+. ..+.+.. +| ..-..++..|+++-.|+.|
T Consensus 32 ~~~~~~~~~~~~~~~~W~~ql~~~~~~~i~~~~~d~vVID~~~~--g~~~~~f---s~---~~i~~Lk~~g~~viaYlSv 103 (315)
T TIGR01370 32 PMTPPSKKPALSAVQHWGYQLQNADLNEIHTSPFELVVIDYSKD--GTEDGTY---SP---EEIVRAAAAGRWPIAYLSI 103 (315)
T ss_pred ccCCccccccccccceEEEEeCCCChhhhhccCCCEEEEccccc--cCcccCC---CH---HHHHHHHhCCcEEEEEEEc
Confidence 35544444444445567776444334444578899988765321 0011100 00 0001234457777788887
Q ss_pred cChhhHhhhccccCCCCeEEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHH----HHHhhcccCeEEEecCCH
Q 025857 118 STPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIF----LEALEQGLGGIVLKVEDV 193 (247)
Q Consensus 118 ~~~e~le~a~~~~~~~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~va----l~~LE~G~DGVll~~~d~ 193 (247)
-.-|+-.. | -.++|+.+|-+-++..-.+=.+.-+.-..+.+=-..+ -.++++|.|||.|++=|.
T Consensus 104 Ge~E~~R~---------y---~~~~~~~~~~~~l~~~n~~W~g~~~vd~~~~~W~~il~~rl~~l~~kGfDGvfLD~lDs 171 (315)
T TIGR01370 104 GAAEDYRF---------Y---WQKGWKVNAPAWLGNEDPDWPGNYDVKYWDPEWKAIAFSYLDRVIAQGFDGVYLDLIDA 171 (315)
T ss_pred hhccccch---------h---hhhhhhcCCHHHhCCCCCCCCCceeEecccHHHHHHHHHHHHHHHHcCCCeEeeccchh
Confidence 65443111 1 1236777888878776555334445555554433232 345689999999987553
No 37
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=83.87 E-value=2.4 Score=39.76 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=42.2
Q ss_pred hhhhhhcccCC---CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 025857 148 AENIVASFQGS---GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (247)
Q Consensus 148 lENlIA~~q~~---~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~~ 204 (247)
+.+-|+++... ..+|..+|.|.+||+.++ +.|+|.|+|+.=+|+++++...++.
T Consensus 179 i~~av~~~r~~~~~~~kIeVEv~slee~~ea~---~~gaDiImLDn~s~e~l~~av~~~~ 235 (281)
T PRK06543 179 LTEALRHVRAQLGHTTHVEVEVDRLDQIEPVL---AAGVDTIMLDNFSLDDLREGVELVD 235 (281)
T ss_pred HHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHH---hcCCCEEEECCCCHHHHHHHHHHhC
Confidence 44455444332 357999999999998764 7899999999999999988888764
No 38
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=83.47 E-value=7.7 Score=33.46 Aligned_cols=110 Identities=15% Similarity=0.136 Sum_probs=58.6
Q ss_pred CchhHHHHHHHhCCcEEEecCc-chHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeE
Q 025857 58 ESKQVMTAAVERGWNTFVFLSE-NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~~-~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~v 136 (247)
...+.+..+.+.|+|+|.++.. ..+..+++.+ .+.. ++..+.+.+.++.+.. ..++++
T Consensus 68 ~~~~~~~~~~~~g~d~v~l~~~~~~~~~~~~~~-----------------~~i~--~i~~v~~~~~~~~~~~--~gad~i 126 (236)
T cd04730 68 DFEALLEVALEEGVPVVSFSFGPPAEVVERLKA-----------------AGIK--VIPTVTSVEEARKAEA--AGADAL 126 (236)
T ss_pred CHHHHHHHHHhCCCCEEEEcCCCCHHHHHHHHH-----------------cCCE--EEEeCCCHHHHHHHHH--cCCCEE
Confidence 5678999999999999998642 1222222221 1222 2334455566555443 347887
Q ss_pred EEecC------CCeeechhhhhhccc-CCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 137 VIDLP------DWQVIPAENIVASFQ-GSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 137 Vv~~~------DWtiIPlENlIA~~q-~~~~~lia--~v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
++... .....+...++.++. ..+..+++ .+++.++++.++ +.|+|||++.+.
T Consensus 127 ~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l---~~GadgV~vgS~ 187 (236)
T cd04730 127 VAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAAL---ALGADGVQMGTR 187 (236)
T ss_pred EEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHH---HcCCcEEEEchh
Confidence 77542 111112223333322 11233443 335556655554 589999999754
No 39
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=83.28 E-value=3.9 Score=38.10 Aligned_cols=112 Identities=11% Similarity=0.144 Sum_probs=64.2
Q ss_pred CchhHHHHHHHhCCcEEEecC-cc-hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhc-cccCCCC
Q 025857 58 ESKQVMTAAVERGWNTFVFLS-EN-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQ-PADGQAE 134 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~-~~-~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~-~~~~~~~ 134 (247)
.+.+++.+.-+.|.=+++-.. .. .++-+++..+.-.. ++++++-+-...+...+.+. ....+.+
T Consensus 23 s~~~la~avs~aGglG~l~~~~~~~~~l~~~i~~~~~~t-------------~~pfgvn~~~~~~~~~~~~~~~~~~~v~ 89 (307)
T TIGR03151 23 ATGSLAAAVSNAGGLGIIGAGNAPPDVVRKEIRKVKELT-------------DKPFGVNIMLLSPFVDELVDLVIEEKVP 89 (307)
T ss_pred CCHHHHHHHHhCCCcceeccccCCHHHHHHHHHHHHHhc-------------CCCcEEeeecCCCCHHHHHHHHHhCCCC
Confidence 458899999999988887421 11 11222222222111 22333332222222222222 1123455
Q ss_pred eEEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 025857 135 NIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 135 ~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
.+.+.+. .|-+ ++.+++..+.++++.+.+.++|+.+. +.|+|+|++..
T Consensus 90 ~v~~~~g----~p~~-~i~~lk~~g~~v~~~v~s~~~a~~a~---~~GaD~Ivv~g 137 (307)
T TIGR03151 90 VVTTGAG----NPGK-YIPRLKENGVKVIPVVASVALAKRME---KAGADAVIAEG 137 (307)
T ss_pred EEEEcCC----CcHH-HHHHHHHcCCEEEEEcCCHHHHHHHH---HcCCCEEEEEC
Confidence 5554433 3544 89999888899999999999987555 66999999855
No 40
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=83.21 E-value=22 Score=30.75 Aligned_cols=126 Identities=14% Similarity=0.088 Sum_probs=62.3
Q ss_pred CchhHHHHHHHhCCcEEEecC---cc----hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhcccc
Q 025857 58 ESKQVMTAAVERGWNTFVFLS---EN----QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPAD 130 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~---~~----~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~ 130 (247)
.+.+.+..+++.|++.+++.+ ++ .+.+++++.=.++-.+-+.++++.- +|.+-. ...++.++......
T Consensus 82 ~~~ed~~~~~~~Ga~~vvlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~-~g~~~~---~~~~~~~~~~~~~~- 156 (230)
T TIGR00007 82 RSLEDVEKLLDLGVDRVIIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAV-KGWLEK---SEVSLEELAKRLEE- 156 (230)
T ss_pred CCHHHHHHHHHcCCCEEEEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEE-cCCccc---CCCCHHHHHHHHHh-
Confidence 588999999999999999863 22 3445555532333333333443211 111000 00122222222211
Q ss_pred CCCCeEEEecCC----CeeechhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 131 GQAENIVIDLPD----WQVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 131 ~~~~~vVv~~~D----WtiIPlENlIA~~q~~~~~lia~--v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
..++.+++...+ -.-+-++.+-.-.+..+..+++. +.+.++++.++ +.|+|||++.+.
T Consensus 157 ~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~---~~Gadgv~ig~a 220 (230)
T TIGR00007 157 LGLEGIIYTDISRDGTLSGPNFELTKELVKAVNVPVIASGGVSSIDDLIALK---KLGVYGVIVGKA 220 (230)
T ss_pred CCCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHH---HCCCCEEEEeHH
Confidence 235655544221 01122222222112233445544 58999998765 489999998653
No 41
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=83.01 E-value=4.7 Score=37.81 Aligned_cols=54 Identities=17% Similarity=0.097 Sum_probs=41.3
Q ss_pred hhhhhhcccCC---CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 025857 148 AENIVASFQGS---GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (247)
Q Consensus 148 lENlIA~~q~~---~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~~ 204 (247)
+++-++++... ..+|.-++.|.+||+.++ +.|+|.|+|++=+++++++..+.+.
T Consensus 182 i~~av~~~r~~~~~~~~I~VEv~tleea~eA~---~~GaD~I~LDn~~~e~l~~av~~~~ 238 (288)
T PRK07428 182 IGEAITRIRQRIPYPLTIEVETETLEQVQEAL---EYGADIIMLDNMPVDLMQQAVQLIR 238 (288)
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHHH
Confidence 44444443332 357899999999998655 7999999999999999988877654
No 42
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=82.95 E-value=4.4 Score=29.67 Aligned_cols=80 Identities=16% Similarity=0.160 Sum_probs=50.0
Q ss_pred EecChhhHhhhccccCCCCeEEEecCCCeeechhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 025857 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (247)
Q Consensus 116 ~I~~~e~le~a~~~~~~~~~vVv~~~DWtiIPlENlIA~~q~--~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~ 193 (247)
...+.++..... .....+.++++..-.. .-...++..+++ .+..++....+.+ .......++.|++|.+.+|-++
T Consensus 28 ~~~~~~~~~~~~-~~~~~d~iiid~~~~~-~~~~~~~~~i~~~~~~~~ii~~t~~~~-~~~~~~~~~~g~~~~l~kp~~~ 104 (112)
T PF00072_consen 28 TASSGEEALELL-KKHPPDLIIIDLELPD-GDGLELLEQIRQINPSIPIIVVTDEDD-SDEVQEALRAGADDYLSKPFSP 104 (112)
T ss_dssp EESSHHHHHHHH-HHSTESEEEEESSSSS-SBHHHHHHHHHHHTTTSEEEEEESSTS-HHHHHHHHHTTESEEEESSSSH
T ss_pred EECCHHHHHHHh-cccCceEEEEEeeecc-ccccccccccccccccccEEEecCCCC-HHHHHHHHHCCCCEEEECCCCH
Confidence 444555533333 3335788888865444 333344444333 4567777774444 5566777799999999999999
Q ss_pred HHHHH
Q 025857 194 KAVLA 198 (247)
Q Consensus 194 ~ev~~ 198 (247)
.++.+
T Consensus 105 ~~l~~ 109 (112)
T PF00072_consen 105 EELRA 109 (112)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 97653
No 43
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=82.91 E-value=2.8 Score=39.35 Aligned_cols=55 Identities=9% Similarity=-0.017 Sum_probs=42.3
Q ss_pred chhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 025857 147 PAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (247)
Q Consensus 147 PlENlIA~~q~--~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~~ 204 (247)
.+++-|.++.. ...+|..+|.|.+||+.+ ++.|+|.|+|+.=+|+++++..+.+.
T Consensus 185 ~i~~ai~~~r~~~~~~kIeVEv~tl~ea~ea---l~~gaDiI~LDnm~~e~vk~av~~~~ 241 (289)
T PRK07896 185 SVVAALRAVRAAAPDLPCEVEVDSLEQLDEV---LAEGAELVLLDNFPVWQTQEAVQRRD 241 (289)
T ss_pred cHHHHHHHHHHhCCCCCEEEEcCCHHHHHHH---HHcCCCEEEeCCCCHHHHHHHHHHHh
Confidence 34455555443 225799999999998766 78999999999999999988877654
No 44
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=82.66 E-value=4.5 Score=34.91 Aligned_cols=113 Identities=15% Similarity=0.134 Sum_probs=68.0
Q ss_pred chhHHHHHHHhCCcEEEecCc------chHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCC
Q 025857 59 SKQVMTAAVERGWNTFVFLSE------NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 132 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~~~------~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~ 132 (247)
--++.....+.|++++-+..+ ..+..+...+..- -|+.+.+ -+.++++++.+... .
T Consensus 33 ~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~-iPi~~~~---------------~i~~~~~v~~~~~~--G 94 (217)
T cd00331 33 PVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAVS-LPVLRKD---------------FIIDPYQIYEARAA--G 94 (217)
T ss_pred HHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhcC-CCEEECC---------------eecCHHHHHHHHHc--C
Confidence 367888899999999765311 1222222222210 1333211 24566665655433 5
Q ss_pred CCeEEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 025857 133 AENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (247)
Q Consensus 133 ~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d 192 (247)
++.+++...|...==+++++-.+..-+...+..+.+.+|++. +++.|+|.+.+.+.|
T Consensus 95 ad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~~e~~~---~~~~g~~~i~~t~~~ 151 (217)
T cd00331 95 ADAVLLIVAALDDEQLKELYELARELGMEVLVEVHDEEELER---ALALGAKIIGINNRD 151 (217)
T ss_pred CCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEECCHHHHHH---HHHcCCCEEEEeCCC
Confidence 788888877765322355555444456677888899999655 556899999888655
No 45
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=82.35 E-value=2.2 Score=27.51 Aligned_cols=26 Identities=15% Similarity=0.390 Sum_probs=20.2
Q ss_pred EEEEEe-CchhHHHHHHHhCCcEEEec
Q 025857 52 RVWIWT-ESKQVMTAAVERGWNTFVFL 77 (247)
Q Consensus 52 ~vWiW~-~~KevvT~ALEsG~d~~v~~ 77 (247)
+|-+|+ ++.+.++.+|..|+|+|+..
T Consensus 1 kV~~WT~d~~~~~~~~l~~GVDgI~Td 27 (30)
T PF13653_consen 1 KVYFWTPDKPASWRELLDLGVDGIMTD 27 (30)
T ss_dssp EEEEET--SHHHHHHHHHHT-SEEEES
T ss_pred CeEEecCCCHHHHHHHHHcCCCEeeCC
Confidence 366788 57899999999999999864
No 46
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=82.10 E-value=5 Score=37.43 Aligned_cols=55 Identities=11% Similarity=0.080 Sum_probs=43.5
Q ss_pred chhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 025857 147 PAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (247)
Q Consensus 147 PlENlIA~~q~~--~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~~ 204 (247)
.+++.+.++... ..+|..++.+.+||+.+ ++.|+|.|+|+.=+|+++++..+.+.
T Consensus 174 ~i~~av~~~r~~~~~~kIeVEv~tleea~ea---~~~GaDiI~lDn~~~e~l~~~v~~l~ 230 (277)
T TIGR01334 174 DWGGAIGRLKQTAPERKITVEADTIEQALTV---LQASPDILQLDKFTPQQLHHLHERLK 230 (277)
T ss_pred cHHHHHHHHHHhCCCCCEEEECCCHHHHHHH---HHcCcCEEEECCCCHHHHHHHHHHHh
Confidence 355555554432 46799999999999865 68999999999999999988888764
No 47
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=81.95 E-value=3.3 Score=39.16 Aligned_cols=42 Identities=12% Similarity=0.040 Sum_probs=36.5
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 025857 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (247)
Q Consensus 160 ~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~~ 204 (247)
.+|..+|.|.+||+.+ ++.|+|.|+|+.=+|+++++..+++.
T Consensus 206 ~kIeVEvetleea~eA---~~aGaDiImLDnmspe~l~~av~~~~ 247 (294)
T PRK06978 206 VPVQIEVETLAQLETA---LAHGAQSVLLDNFTLDMMREAVRVTA 247 (294)
T ss_pred CcEEEEcCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHhhc
Confidence 5799999999998865 58999999999999999988777653
No 48
>PLN02762 pyruvate kinase complex alpha subunit
Probab=81.34 E-value=12 Score=37.99 Aligned_cols=135 Identities=16% Similarity=0.181 Sum_probs=89.7
Q ss_pred CchhHHHHHHHhCCcEEEecC-cchHHHhhccceeEEeeeeecCCceecCCC--CeEEEEEEecChhhHhhhccccCCCC
Q 025857 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGD--RRVGSIIEVSTPQELQQLQPADGQAE 134 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~-~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g--~~va~~~~I~~~e~le~a~~~~~~~~ 134 (247)
.||+.+.-|++-|+|.|-+.= .+++.++++.++ +...| ..+..+..|++++.++.+.+-....|
T Consensus 204 kD~~di~f~~~~~vD~ia~SFVr~a~Dv~~~r~~-------------l~~~g~~~~~~IiAKIE~~~av~nl~eIi~~sD 270 (509)
T PLN02762 204 KDWLDIDFGISEGVDFIAVSFVKSAEVIKHLKSY-------------IAARSRDSDIGVIAKIESLDSLKNLEEIIRASD 270 (509)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHHcCCCCCceEEEEeCCHHHHHHHHHHHHhcC
Confidence 478889999999999755320 123333333222 11222 24668999999999999988888899
Q ss_pred eEEEecCCCee-echhhhhhc-------ccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC---
Q 025857 135 NIVIDLPDWQV-IPAENIVAS-------FQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED--- 192 (247)
Q Consensus 135 ~vVv~~~DWti-IPlENlIA~-------~q~~~~~lia~-----------v~~~~EA~val~~LE~G~DGVll~~~d--- 192 (247)
-++|-..|=-+ ||+|++-.. ....+.-+|.. ..+-.|+--...+.--|+|+|+|..+.
T Consensus 271 giMVARGDLGvEip~e~vp~~QK~II~~c~~~gKPVIvATQmLeSMi~np~PTRAEvsDVaNAVlDGtDavMLSgETA~G 350 (509)
T PLN02762 271 GAMVARGDLGAQIPLEQVPSVQEKIVRLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMG 350 (509)
T ss_pred EEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCEEEECchHHhhhhCCCCCchhHHHHHHHHHhCCCEEEEcchhcCC
Confidence 98888777654 888886432 21222223321 236677778888899999999999765
Q ss_pred ---HHHHHHHHHhhcc
Q 025857 193 ---VKAVLALKEYFDG 205 (247)
Q Consensus 193 ---~~ev~~l~~~~~~ 205 (247)
.+.|+-+.+++.+
T Consensus 351 ~yPveaV~~m~~I~~~ 366 (509)
T PLN02762 351 LYPEKALSVLRSVSLR 366 (509)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 5666666666653
No 49
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=80.97 E-value=6.3 Score=39.13 Aligned_cols=135 Identities=19% Similarity=0.290 Sum_probs=82.5
Q ss_pred CchhHHHHHHHhCCcEEEecC-cchHHHhhccceeEEeeeeecCCceecCCC-CeEEEEEEecChhhHhhhccccCCCCe
Q 025857 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGD-RRVGSIIEVSTPQELQQLQPADGQAEN 135 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~-~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g-~~va~~~~I~~~e~le~a~~~~~~~~~ 135 (247)
.|++-+..+++.|+|.|.++. ++++.++.+.+.- ...+ ..+.++..|++++.++.+.+.....+-
T Consensus 172 kD~~Dl~~~~~~~~d~I~lskV~sa~dv~~l~~~l-------------~~~~~~~~~Iia~IEt~~av~nl~eI~~~~dg 238 (473)
T TIGR01064 172 KDKKDLKFGVEQGVDMVAASFVRTAEDVLEVREVL-------------GEKGAKDVKIIAKIENQEGVDNIDEIAEASDG 238 (473)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHH-------------HhcCCCCceEEEEECCHHHHHhHHHHHhhCCc
Confidence 478889999999999999875 3444444332211 1111 235688899999999888766655666
Q ss_pred EEEecCCCee-echh-------hhhhcccCCCceEEEEc-------C----CHHHHHHHHHHhhcccCeEEEecCC----
Q 025857 136 IVIDLPDWQV-IPAE-------NIVASFQGSGKTVFAIS-------K----TPSEAQIFLEALEQGLGGIVLKVED---- 192 (247)
Q Consensus 136 vVv~~~DWti-IPlE-------NlIA~~q~~~~~lia~v-------~----~~~EA~val~~LE~G~DGVll~~~d---- 192 (247)
+++-..|-.. +|.| -++.+....+..++... . +-.|+.-+..+.+.|+|+|+|..+.
T Consensus 239 i~iG~gDL~~~lg~~~l~~~~~~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~ 318 (473)
T TIGR01064 239 IMVARGDLGVEIPAEEVPIAQKKMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGK 318 (473)
T ss_pred EEEchHHHHhhcCcHHHHHHHHHHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCC
Confidence 5555433211 1222 23333233333333222 1 3346777788899999999997764
Q ss_pred --HHHHHHHHHhhcc
Q 025857 193 --VKAVLALKEYFDG 205 (247)
Q Consensus 193 --~~ev~~l~~~~~~ 205 (247)
.+.|+-+.+++.+
T Consensus 319 yP~~~v~~m~~I~~~ 333 (473)
T TIGR01064 319 YPVEAVKMMAKIAKE 333 (473)
T ss_pred CHHHHHHHHHHHHHH
Confidence 5667777777654
No 50
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=80.77 E-value=15 Score=33.16 Aligned_cols=140 Identities=11% Similarity=0.188 Sum_probs=83.3
Q ss_pred EEEEEeCchhHHHHHHHhCCcEEEecCcc-----hHHHh------hccceeEEeeeeecCCceec--CCCCeEEEEEEec
Q 025857 52 RVWIWTESKQVMTAAVERGWNTFVFLSEN-----QQLAI------DWSTIALLDPLFIKEGEVYD--SGDRRVGSIIEVS 118 (247)
Q Consensus 52 ~vWiW~~~KevvT~ALEsG~d~~v~~~~~-----~e~~~------~lg~i~~i~pl~i~~g~~~~--~~g~~va~~~~I~ 118 (247)
-+|++..+..++..+..+|+|.+++.-|| .+... ..|--.++.+=..+-..+.. .-|..--.+-.|.
T Consensus 15 g~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~~i~~~Ld~Ga~gIivP~v~ 94 (249)
T TIGR02311 15 GLWLGLADPYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGDPVLIKQLLDIGAQTLLVPMIE 94 (249)
T ss_pred EEEEeCCCcHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCCHHHHHHHhCCCCCEEEecCcC
Confidence 48888888999999999999999986565 12221 11221122210001111111 2233333455889
Q ss_pred ChhhHhhhccccCCC-------CeEEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhh-cccCeEEEec
Q 025857 119 TPQELQQLQPADGQA-------ENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALE-QGLGGIVLKV 190 (247)
Q Consensus 119 ~~e~le~a~~~~~~~-------~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE-~G~DGVll~~ 190 (247)
++|+.+.+....+.. .+-.....+|...| +-++. .+..+.+++-+.+++-.+-+-+++. .|+||+.+-|
T Consensus 95 s~e~a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~--~y~~~-~n~~~~vi~~IEt~~av~n~~eI~a~~gvd~l~~G~ 171 (249)
T TIGR02311 95 TAEQAEAAVAATRYPPMGIRGVGSALARASRWNRIP--DYLQQ-ADEEICVLLQVETREALDNLEEIAAVEGVDGVFIGP 171 (249)
T ss_pred CHHHHHHHHHHcCCCCCCcCCCCCccchhhccCChH--HHHHH-hhhceEEEEEecCHHHHHHHHHHHCCCCCcEEEECH
Confidence 999998886655421 11112334555433 33343 2445778999999988888877775 4899999998
Q ss_pred CCHH
Q 025857 191 EDVK 194 (247)
Q Consensus 191 ~d~~ 194 (247)
.|..
T Consensus 172 ~DLs 175 (249)
T TIGR02311 172 ADLA 175 (249)
T ss_pred HHHH
Confidence 7654
No 51
>PF11247 DUF2675: Protein of unknown function (DUF2675) ; InterPro: IPR022611 Members in this family of proteins include Bacteriophage T7 gene 5.5; they have no known function.
Probab=80.75 E-value=1 Score=36.56 Aligned_cols=55 Identities=24% Similarity=0.244 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhcccccccceeeeEEEEEEEE
Q 025857 168 TPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRV 223 (247)
Q Consensus 168 ~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~~~~~~~~~~l~L~~AtVT~V 223 (247)
|.-+.++...+|.+|.||++--.=--+--..+|+...+.. ++..+.+.||||..|
T Consensus 43 ~~~~re~l~qaLT~G~egav~f~~k~g~R~~IKe~~~E~s-~k~~~~~sPatvR~v 97 (98)
T PF11247_consen 43 SGFQREMLVQALTHGPEGAVAFVVKQGIREAIKEMLSEYS-DKESFKFSPATVREV 97 (98)
T ss_pred CHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhc-cccceeecCceEEee
Confidence 8999999999999999999732211112223444444433 577899999999876
No 52
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=80.51 E-value=27 Score=31.42 Aligned_cols=137 Identities=20% Similarity=0.223 Sum_probs=74.2
Q ss_pred hhHHHHHHHhCCcEEEecCcc------hHHHhhccceeEEe--eeeecC---------------Cc--e-------ecCC
Q 025857 60 KQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLD--PLFIKE---------------GE--V-------YDSG 107 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~~~------~e~~~~lg~i~~i~--pl~i~~---------------g~--~-------~~~~ 107 (247)
-+.+..||+.|++.+.++..+ .+.++++..+..-. |+++|| |+ . +-+.
T Consensus 24 ~~~ve~al~~Gv~~vQlR~K~~~~~~~~~~a~~~~~lc~~~~v~liINd~~dlA~~~~AdGVHlGq~D~~~~~ar~~~~~ 103 (211)
T COG0352 24 LEWVEAALKGGVTAVQLREKDLSDEEYLALAEKLRALCQKYGVPLIINDRVDLALAVGADGVHLGQDDMPLAEARELLGP 103 (211)
T ss_pred HHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHHHHHHHhCCeEEecCcHHHHHhCCCCEEEcCCcccchHHHHHhcCC
Confidence 478999999999999885311 34444443333211 455554 11 0 1233
Q ss_pred CCeEEEEEEecChhhHhhhccccCCCCeEEEec-------CCCeeechhhhhhcccCCCceEEEEcC-CHHHHHHHHHHh
Q 025857 108 DRRVGSIIEVSTPQELQQLQPADGQAENIVIDL-------PDWQVIPAENIVASFQGSGKTVFAISK-TPSEAQIFLEAL 179 (247)
Q Consensus 108 g~~va~~~~I~~~e~le~a~~~~~~~~~vVv~~-------~DWtiIPlENlIA~~q~~~~~lia~v~-~~~EA~val~~L 179 (247)
++.+|+- +.+.++..++...+ +||+.+-. .|-..+=+|-+-...+....-+||.-. |++- +-+++
T Consensus 104 ~~iIG~S--~h~~eea~~A~~~g--~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGGi~~~n---v~~v~ 176 (211)
T COG0352 104 GLIIGLS--THDLEEALEAEELG--ADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIGGINLEN---VPEVL 176 (211)
T ss_pred CCEEEee--cCCHHHHHHHHhcC--CCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEcCCCHHH---HHHHH
Confidence 3444444 34777766666543 88877652 133333334333222222234566654 5544 44678
Q ss_pred hcccCeEEEe-----cCC-HHHHHHHHHhh
Q 025857 180 EQGLGGIVLK-----VED-VKAVLALKEYF 203 (247)
Q Consensus 180 E~G~DGVll~-----~~d-~~ev~~l~~~~ 203 (247)
+.|+|||-+- ..| ...++++++.+
T Consensus 177 ~~Ga~gVAvvsai~~a~d~~~a~~~~~~~~ 206 (211)
T COG0352 177 EAGADGVAVVSAITSAADPAAAAKALRNAL 206 (211)
T ss_pred HhCCCeEEehhHhhcCCCHHHHHHHHHHHH
Confidence 8999999763 333 44555555554
No 53
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=80.35 E-value=9.3 Score=36.47 Aligned_cols=116 Identities=13% Similarity=0.105 Sum_probs=76.1
Q ss_pred EeCchhHHHHHHHhCCcEEEecCcchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCC---
Q 025857 56 WTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ--- 132 (247)
Q Consensus 56 W~~~KevvT~ALEsG~d~~v~~~~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~--- 132 (247)
+.-+.++...|=|-|.-+++.. -+.|...... .-++| ++..+++-+.+ ++++.+++..+...
T Consensus 47 t~iN~~LA~~a~~~G~~~~~~k-~~~e~~~~~~--r~~~~-----------~~l~v~~~vg~-~~~~~~~~~~Lv~ag~~ 111 (326)
T PRK05458 47 TIIDEKIAEWLAENGYFYIMHR-FDPEARIPFI--KDMHE-----------QGLIASISVGV-KDDEYDFVDQLAAEGLT 111 (326)
T ss_pred chhHHHHHHHHHHcCCEEEEec-CCHHHHHHHH--Hhccc-----------cccEEEEEecC-CHHHHHHHHHHHhcCCC
Confidence 3457899999999999888876 1233322111 11222 23333333333 45666666555543
Q ss_pred CCeEEEecCCCeeechhhhhhcccCCC--ceEEE-EcCCHHHHHHHHHHhhcccCeEEEe
Q 025857 133 AENIVIDLPDWQVIPAENIVASFQGSG--KTVFA-ISKTPSEAQIFLEALEQGLGGIVLK 189 (247)
Q Consensus 133 ~~~vVv~~~DWtiIPlENlIA~~q~~~--~~lia-~v~~~~EA~val~~LE~G~DGVll~ 189 (247)
+|.++|+..+--...+.++|+.+...- .-|++ .+.|.++|+.+. +.|+|++.+.
T Consensus 112 ~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~---~aGad~i~vg 168 (326)
T PRK05458 112 PEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELE---NAGADATKVG 168 (326)
T ss_pred CCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHH---HcCcCEEEEC
Confidence 499999999988889999999987642 45666 488888886654 6899998855
No 54
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=79.01 E-value=9.4 Score=36.44 Aligned_cols=114 Identities=12% Similarity=0.053 Sum_probs=67.4
Q ss_pred eCchhHHHHHHHhCCcEEEecCcchHH-HhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCC---
Q 025857 57 TESKQVMTAAVERGWNTFVFLSENQQL-AIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ--- 132 (247)
Q Consensus 57 ~~~KevvT~ALEsG~d~~v~~~~~~e~-~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~--- 132 (247)
.-+.++...|-|-|.-+++.. -+.|. +.. +.-+.| ++..+++ .--.++++++++.++.+.
T Consensus 45 ~in~~LA~~a~~~G~~~i~hK-~~~E~~~sf---vrk~k~-----------~~L~v~~-SvG~t~e~~~r~~~lv~a~~~ 108 (321)
T TIGR01306 45 IIDEKLAEQLAENGYFYIMHR-FDEESRIPF---IKDMQE-----------RGLFASI-SVGVKACEYEFVTQLAEEALT 108 (321)
T ss_pred hhhHHHHHHHHHcCCEEEEec-CCHHHHHHH---HHhccc-----------cccEEEE-EcCCCHHHHHHHHHHHhcCCC
Confidence 457899999999999998876 12332 222 111111 1222222 222355666777655543
Q ss_pred CCeEEEecCCCeeechhhhhhcccCCC--ceEEEE-cCCHHHHHHHHHHhhcccCeEEEe
Q 025857 133 AENIVIDLPDWQVIPAENIVASFQGSG--KTVFAI-SKTPSEAQIFLEALEQGLGGIVLK 189 (247)
Q Consensus 133 ~~~vVv~~~DWtiIPlENlIA~~q~~~--~~lia~-v~~~~EA~val~~LE~G~DGVll~ 189 (247)
.++++++...=--..+-+.|..+.+.- .-+++. +.+.+.|+.+ ++.|+|||.+.
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l---~~aGad~I~V~ 165 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVREL---ENAGADATKVG 165 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHH---HHcCcCEEEEC
Confidence 599999986544555556666554421 224444 6677666655 57899999877
No 55
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=77.89 E-value=12 Score=30.55 Aligned_cols=108 Identities=13% Similarity=0.066 Sum_probs=52.8
Q ss_pred hhHHHHHHHhCCcEEEecCcchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeEEEe
Q 025857 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vVv~ 139 (247)
.+.+..+++.|++.+.++..+.........+..+.++ .+.-| ..+-+.+ +.+.+... .++.+-+.
T Consensus 15 ~~~l~~l~~~g~~~i~lr~~~~~~~~~~~~~~~i~~~-------~~~~~----~~l~~~~--~~~~a~~~--g~~~vh~~ 79 (196)
T cd00564 15 LEVVEAALKGGVTLVQLREKDLSARELLELARALREL-------CRKYG----VPLIIND--RVDLALAV--GADGVHLG 79 (196)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHH-------HHHhC----CeEEEeC--hHHHHHHc--CCCEEecC
Confidence 6789999999999988753211111111111111110 00011 1111222 23333222 34554444
Q ss_pred cCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 025857 140 LPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (247)
Q Consensus 140 ~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~ 189 (247)
..+.. .+ .+..+.+.+..+-..+.+.+|++. +++.|+|.|++.
T Consensus 80 ~~~~~---~~-~~~~~~~~~~~~g~~~~t~~~~~~---~~~~g~d~i~~~ 122 (196)
T cd00564 80 QDDLP---VA-EARALLGPDLIIGVSTHSLEEALR---AEELGADYVGFG 122 (196)
T ss_pred cccCC---HH-HHHHHcCCCCEEEeeCCCHHHHHH---HhhcCCCEEEEC
Confidence 43332 22 223333445567777788877654 567899999885
No 56
>PLN02623 pyruvate kinase
Probab=76.97 E-value=13 Score=38.40 Aligned_cols=135 Identities=16% Similarity=0.215 Sum_probs=88.4
Q ss_pred CchhHHHHHHHhCCcEEEecC-cchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeE
Q 025857 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~-~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~v 136 (247)
.|++.+.-|++-|+|.+-..= .+++.++++.+. +...|..+.++..|++++.++.+.+.....|-+
T Consensus 279 kD~~di~f~~~~~vD~ialSFVr~a~DV~~~r~~-------------l~~~~~~~~iiakIEt~eaVeNldeIl~g~DgI 345 (581)
T PLN02623 279 KDWEDIKFGVENKVDFYAVSFVKDAQVVHELKDY-------------LKSCNADIHVIVKIESADSIPNLHSIITASDGA 345 (581)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHHcCCcceEEEEECCHHHHHhHHHHHHhCCEE
Confidence 478889999999999754320 224444443322 122344667899999999999987777788887
Q ss_pred EEecCCC-eeechhhhhh-------cccCCCceEEE-----------EcCCHHHHHHHHHHhhcccCeEEEecCC-----
Q 025857 137 VIDLPDW-QVIPAENIVA-------SFQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVED----- 192 (247)
Q Consensus 137 Vv~~~DW-tiIPlENlIA-------~~q~~~~~lia-----------~v~~~~EA~val~~LE~G~DGVll~~~d----- 192 (247)
+|-..|= -=||+|.+.+ +....+.-++. ...+-.|+.-+..+++.|+|+|+|..+.
T Consensus 346 mIgrgDLgvelg~~~v~~~qk~Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Eta~G~y 425 (581)
T PLN02623 346 MVARGDLGAELPIEEVPLLQEEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKF 425 (581)
T ss_pred EECcchhhhhcCcHHHHHHHHHHHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchhhcCcC
Confidence 7765553 3356655433 33333333332 1234468888899999999999999764
Q ss_pred -HHHHHHHHHhhcc
Q 025857 193 -VKAVLALKEYFDG 205 (247)
Q Consensus 193 -~~ev~~l~~~~~~ 205 (247)
...|+-+.+++.+
T Consensus 426 PveaV~~m~~I~~~ 439 (581)
T PLN02623 426 PLKAVKVMHTVALR 439 (581)
T ss_pred HHHHHHHHHHHHHH
Confidence 5566667776654
No 57
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=76.46 E-value=6.1 Score=37.40 Aligned_cols=41 Identities=17% Similarity=0.024 Sum_probs=35.5
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 025857 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (247)
Q Consensus 160 ~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~ 203 (247)
.+|..+|.|.+||+. +++.|+|.|+|+.=+|++++++.+++
T Consensus 209 ~kIeVEv~sleea~e---a~~~gaDiI~LDn~s~e~~~~av~~~ 249 (296)
T PRK09016 209 VPVEVEVENLDELDQ---ALKAGADIIMLDNFTTEQMREAVKRT 249 (296)
T ss_pred CCEEEEeCCHHHHHH---HHHcCCCEEEeCCCChHHHHHHHHhh
Confidence 579999999999875 56799999999999999888887764
No 58
>PRK06739 pyruvate kinase; Validated
Probab=76.40 E-value=21 Score=34.46 Aligned_cols=135 Identities=15% Similarity=0.161 Sum_probs=88.0
Q ss_pred CchhHHHHHHHhCCcEEEecC-cchHHHhhccceeEEeeeeecCCceecCC-CCeEEEEEEecChhhHhhhccccCCCCe
Q 025857 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSG-DRRVGSIIEVSTPQELQQLQPADGQAEN 135 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~-~~~e~~~~lg~i~~i~pl~i~~g~~~~~~-g~~va~~~~I~~~e~le~a~~~~~~~~~ 135 (247)
.|++.+.-|++.|+|.|-..= .+++.++++.++- ... +..+..+..|.+++.++.+.......|.
T Consensus 166 kD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l-------------~~~g~~~~~IiaKIE~~~av~nl~eI~~~sDg 232 (352)
T PRK06739 166 KDKKDIQFLLEEDVDFIACSFVRKPSHIKEIRDFI-------------QQYKETSPNLIAKIETMEAIENFQDICKEADG 232 (352)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHH-------------HHcCCCCCcEEEEECCHHHHHHHHHHHHhcCE
Confidence 578889999999999755320 1233333332221 111 1245588899999999999888888899
Q ss_pred EEEecCCCe-eechhhhh-------hcccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC----
Q 025857 136 IVIDLPDWQ-VIPAENIV-------ASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (247)
Q Consensus 136 vVv~~~DWt-iIPlENlI-------A~~q~~~~~lia~-----------v~~~~EA~val~~LE~G~DGVll~~~d---- 192 (247)
++|-..|=- =||+|.+- ......+.-+|.. ..+-.|+--.+.+..-|+|||+|..+.
T Consensus 233 imVARGDLgve~~~e~vp~~Qk~Ii~~c~~~gkPvIvATqmLeSM~~~p~PTRAEvsDVanaV~dG~D~vMLS~ETA~G~ 312 (352)
T PRK06739 233 IMIARGDLGVELPYQFIPLLQKMMIQECNRTNTYVITATQMLQSMVDHSIPTRAEVTDVFQAVLDGTNAVMLSAESASGE 312 (352)
T ss_pred EEEECcccccccCHHHHHHHHHHHHHHHHHhCCCEEEEcchHHhhccCCCCChHHHHHHHHHHHhCCcEEEEcccccCCC
Confidence 888766654 37877653 3322222223321 236678888899999999999999664
Q ss_pred --HHHHHHHHHhhcc
Q 025857 193 --VKAVLALKEYFDG 205 (247)
Q Consensus 193 --~~ev~~l~~~~~~ 205 (247)
+..|+-+.+++.+
T Consensus 313 yPveaV~~m~~I~~~ 327 (352)
T PRK06739 313 HPIESVSTLRLVSEF 327 (352)
T ss_pred CHHHHHHHHHHHHHH
Confidence 5566666666543
No 59
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=75.83 E-value=12 Score=37.56 Aligned_cols=135 Identities=18% Similarity=0.217 Sum_probs=86.7
Q ss_pred CchhHHHHHHHhCCcEEEecC-cchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeE
Q 025857 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~-~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~v 136 (247)
.|++.+.-|++-|+|.+-+.- ..++.++++..+- ...|..+.++..|++++.++.+.+.....|-+
T Consensus 175 kD~~di~f~~~~~vD~ia~SFV~~~~di~~~r~~l-------------~~~~~~~~iiakIEt~~av~nldeI~~~~DgI 241 (480)
T cd00288 175 KDKADLRFGVEQGVDMIFASFVRKASDVLEIREVL-------------GEKGKDIKIIAKIENQEGVNNFDEILEASDGI 241 (480)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHH-------------HhcCCCceEEEEECCHHHHHhHHHHHHhcCEE
Confidence 478899999999999765421 1234443333221 12244567889999999999887777678887
Q ss_pred EEecCCCe-eechhhhhh-------cccCCCceEEE-----------EcCCHHHHHHHHHHhhcccCeEEEecCC-----
Q 025857 137 VIDLPDWQ-VIPAENIVA-------SFQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVED----- 192 (247)
Q Consensus 137 Vv~~~DWt-iIPlENlIA-------~~q~~~~~lia-----------~v~~~~EA~val~~LE~G~DGVll~~~d----- 192 (247)
+|-..|=. =+|.|.+.+ .....+.-++. ...+-.|+--.+.+..-|+|||+|..+.
T Consensus 242 mIargDLg~e~g~~~v~~~qk~ii~~~~~~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D~vmLS~ETa~G~y 321 (480)
T cd00288 242 MVARGDLGVEIPAEEVFLAQKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKGKY 321 (480)
T ss_pred EECcchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCcEEEEechhcCCCC
Confidence 77655533 246666543 22222222222 1235677777888999999999997765
Q ss_pred -HHHHHHHHHhhcc
Q 025857 193 -VKAVLALKEYFDG 205 (247)
Q Consensus 193 -~~ev~~l~~~~~~ 205 (247)
.+.|+-+.+++.+
T Consensus 322 PveaV~~m~~I~~~ 335 (480)
T cd00288 322 PVEAVKAMARICLE 335 (480)
T ss_pred HHHHHHHHHHHHHH
Confidence 5667777777654
No 60
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=75.56 E-value=7.3 Score=37.11 Aligned_cols=45 Identities=22% Similarity=0.235 Sum_probs=35.6
Q ss_pred ceEEEEcCCHHHHHHHHHHh---hcccCeEEEecC---------CHHHHHHHHHhhc
Q 025857 160 KTVFAISKTPSEAQIFLEAL---EQGLGGIVLKVE---------DVKAVLALKEYFD 204 (247)
Q Consensus 160 ~~lia~v~~~~EA~val~~L---E~G~DGVll~~~---------d~~ev~~l~~~~~ 204 (247)
.+|..+|.|.+||+.+++-+ ..|+|.|+|+.= +|+++++..+.+.
T Consensus 204 ~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~~~~ 260 (308)
T PLN02716 204 MKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVELIN 260 (308)
T ss_pred eeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHHHHHHHhhC
Confidence 57999999999998765310 079999999998 9998887776653
No 61
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=73.07 E-value=27 Score=32.22 Aligned_cols=105 Identities=19% Similarity=0.285 Sum_probs=0.0
Q ss_pred chhHHHHHHHhCCcEEEe-----cCcc-hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCC
Q 025857 59 SKQVMTAAVERGWNTFVF-----LSEN-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 132 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~-----~~~~-~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~ 132 (247)
+.-.|-.|-+.|+|+++. +++. .++.+.-.++.. -.+++|.+.++++.+. ...
T Consensus 120 d~~QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGl-------------------e~lVEVh~~~El~~al--~~~ 178 (254)
T PF00218_consen 120 DPYQIYEARAAGADAVLLIAAILSDDQLEELLELAHSLGL-------------------EALVEVHNEEELERAL--EAG 178 (254)
T ss_dssp SHHHHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT--------------------EEEEEESSHHHHHHHH--HTT
T ss_pred CHHHHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHHHcCC-------------------CeEEEECCHHHHHHHH--HcC
Q ss_pred CCeEEEecCCCeeech-----hhhhhcccCCCceEEEEc--CCHHHHHHHHHHhhcccCeEEE
Q 025857 133 AENIVIDLPDWQVIPA-----ENIVASFQGSGKTVFAIS--KTPSEAQIFLEALEQGLGGIVL 188 (247)
Q Consensus 133 ~~~vVv~~~DWtiIPl-----ENlIA~~q~~~~~lia~v--~~~~EA~val~~LE~G~DGVll 188 (247)
++.+-|+-+|-+---. +.|...+... .-++++. ++.+|++.+. +.|+||||+
T Consensus 179 a~iiGINnRdL~tf~vd~~~~~~l~~~ip~~-~~~iseSGI~~~~d~~~l~---~~G~davLV 237 (254)
T PF00218_consen 179 ADIIGINNRDLKTFEVDLNRTEELAPLIPKD-VIVISESGIKTPEDARRLA---RAGADAVLV 237 (254)
T ss_dssp -SEEEEESBCTTTCCBHTHHHHHHHCHSHTT-SEEEEESS-SSHHHHHHHC---TTT-SEEEE
T ss_pred CCEEEEeCccccCcccChHHHHHHHhhCccc-eeEEeecCCCCHHHHHHHH---HCCCCEEEE
No 62
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=72.97 E-value=12 Score=35.96 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=22.3
Q ss_pred EEcCCHHHHHHHHHHhhcccCeEEEec-----CCHHHH
Q 025857 164 AISKTPSEAQIFLEALEQGLGGIVLKV-----EDVKAV 196 (247)
Q Consensus 164 a~v~~~~EA~val~~LE~G~DGVll~~-----~d~~ev 196 (247)
|...+++||.. ++|.|+|||++.+ +||-..
T Consensus 256 AGIg~~sda~~---AmelGadgVL~nSaIa~a~dPv~M 290 (326)
T PRK11840 256 AGVGTASDAAV---AMELGCDGVLMNTAIAEAKNPVLM 290 (326)
T ss_pred CCCCCHHHHHH---HHHcCCCEEEEcceeccCCCHHHH
Confidence 44578888765 5789999999876 566544
No 63
>PLN02461 Probable pyruvate kinase
Probab=72.77 E-value=19 Score=36.58 Aligned_cols=135 Identities=16% Similarity=0.169 Sum_probs=88.9
Q ss_pred CchhHH-HHHHHhCCcEEEecC-cchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCe
Q 025857 58 ESKQVM-TAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (247)
Q Consensus 58 ~~Kevv-T~ALEsG~d~~v~~~-~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~ 135 (247)
.|++.+ .-|++-|+|.+-..= .+++.++++.++ +...|+.+..+..|.+++.++.+.+-....|-
T Consensus 194 kD~~di~~f~~~~~vD~ia~SFVr~a~DV~~~r~~-------------l~~~~~~~~IiAKIE~~~av~nl~eIi~~sDg 260 (511)
T PLN02461 194 KDKEDILQWGVPNKIDFIALSFVRKGSDLVEVRKV-------------LGEHAKSILLISKVENQEGLDNFDDILAESDA 260 (511)
T ss_pred HHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHH-------------HHhCCCCCCEEEEECCHHHHHHHHHHHHhcCE
Confidence 467777 789999999755320 123333332222 12234456789999999999999888888999
Q ss_pred EEEecCCCe-eechhhhhh-------cccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC----
Q 025857 136 IVIDLPDWQ-VIPAENIVA-------SFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (247)
Q Consensus 136 vVv~~~DWt-iIPlENlIA-------~~q~~~~~lia~-----------v~~~~EA~val~~LE~G~DGVll~~~d---- 192 (247)
++|-..|=- =||+|.+-. .....+.-+|.. ..+-.|+--...+..-|+|||+|..+.
T Consensus 261 IMVARGDLGvEip~e~vp~~Qk~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVanAV~dG~D~vMLS~ETA~G~ 340 (511)
T PLN02461 261 FMVARGDLGMEIPIEKIFLAQKMMIYKCNLAGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGA 340 (511)
T ss_pred EEEeccccccccCHHHhHHHHHHHHHHHHHcCCCeEEeehhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEEechhcCCC
Confidence 888766654 377776633 222222223321 236678888888999999999999664
Q ss_pred --HHHHHHHHHhhcc
Q 025857 193 --VKAVLALKEYFDG 205 (247)
Q Consensus 193 --~~ev~~l~~~~~~ 205 (247)
.+.|+.+.+++.+
T Consensus 341 yPveaV~~m~~I~~~ 355 (511)
T PLN02461 341 YPELAVKTMARICRE 355 (511)
T ss_pred CHHHHHHHHHHHHHH
Confidence 5667777777654
No 64
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=72.46 E-value=25 Score=29.50 Aligned_cols=104 Identities=16% Similarity=0.110 Sum_probs=54.2
Q ss_pred hhHHHHHHHhCCcEEEecCc---chHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeE
Q 025857 60 KQVMTAAVERGWNTFVFLSE---NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~~---~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~v 136 (247)
-+.+..|++.|++.|.++.. ..+..+...++..+.. ..| ..+-+.+. .+.+... ..+-+
T Consensus 16 ~~~~~~~~~~g~~~v~lR~~~~~~~~~~~~~~~l~~~~~----------~~~----~~l~i~~~--~~la~~~--g~~Gv 77 (196)
T TIGR00693 16 LNRVEAALKGGVTLVQLRDKGSNTRERLALAEKLQELCR----------RYG----VPFIVNDR--VDLALAL--GADGV 77 (196)
T ss_pred HHHHHHHHhcCCCEEEEecCCCCHHHHHHHHHHHHHHHH----------HhC----CeEEEECH--HHHHHHc--CCCEE
Confidence 45788899999999887531 1222222222222211 011 11222222 2333221 33444
Q ss_pred EEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 025857 137 VIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (247)
Q Consensus 137 Vv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll 188 (247)
.+...+ +|.+.+-..+ +.+..|-..+.+.+|++ +++|.|+|-|.+
T Consensus 78 Hl~~~~---~~~~~~r~~~-~~~~~ig~s~h~~~e~~---~a~~~g~dyi~~ 122 (196)
T TIGR00693 78 HLGQDD---LPASEARALL-GPDKIIGVSTHNLEELA---EAEAEGADYIGF 122 (196)
T ss_pred ecCccc---CCHHHHHHhc-CCCCEEEEeCCCHHHHH---HHhHcCCCEEEE
Confidence 443333 3444443332 33446778889999886 477899999986
No 65
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=72.36 E-value=11 Score=36.45 Aligned_cols=66 Identities=12% Similarity=0.120 Sum_probs=40.7
Q ss_pred EecChhhHhhhccc-cCCCCeEEEecC-----------CCeeechhhhhhcccCCCceEEE-EcCCHHHHHHHHHHhhcc
Q 025857 116 EVSTPQELQQLQPA-DGQAENIVIDLP-----------DWQVIPAENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQG 182 (247)
Q Consensus 116 ~I~~~e~le~a~~~-~~~~~~vVv~~~-----------DWtiIPlENlIA~~q~~~~~lia-~v~~~~EA~val~~LE~G 182 (247)
.+...+.++.+... ...++.++++++ +|.. +-.++. ..+..|++ .+.+.++|+.++ +.|
T Consensus 137 r~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~--i~~~ik---~~~ipVIaG~V~t~e~A~~l~---~aG 208 (368)
T PRK08649 137 SLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLN--LKEFIY---ELDVPVIVGGCVTYTTALHLM---RTG 208 (368)
T ss_pred ecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHH--HHHHHH---HCCCCEEEeCCCCHHHHHHHH---HcC
Confidence 33333444554322 346899999764 4532 334444 44567777 677777776665 589
Q ss_pred cCeEEEe
Q 025857 183 LGGIVLK 189 (247)
Q Consensus 183 ~DGVll~ 189 (247)
+|+|++.
T Consensus 209 AD~V~VG 215 (368)
T PRK08649 209 AAGVLVG 215 (368)
T ss_pred CCEEEEC
Confidence 9999875
No 66
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=72.25 E-value=13 Score=34.17 Aligned_cols=42 Identities=14% Similarity=0.067 Sum_probs=35.8
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 025857 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (247)
Q Consensus 159 ~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~ 203 (247)
+.+|...++|.+||+.| ++.|+|.|.|.+=.++++++..+.+
T Consensus 178 ~~~Igvev~t~eea~~A---~~~gaDyI~ld~~~~e~lk~~v~~~ 219 (265)
T TIGR00078 178 ALKIEVEVESLEEAEEA---AEAGADIIMLDNMKPEEIKEAVQLL 219 (265)
T ss_pred CCeEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHh
Confidence 35788999999998765 5899999999999999888877765
No 67
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=71.92 E-value=17 Score=36.28 Aligned_cols=113 Identities=19% Similarity=0.140 Sum_probs=69.5
Q ss_pred CchhHHHHHHHhCCcEEEecCc--c----hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccC
Q 025857 58 ESKQVMTAAVERGWNTFVFLSE--N----QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG 131 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~~--~----~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~ 131 (247)
+..+.+.+.+|.|+|.+.+... | .+.++++.+. .| +..+++ ..|.+.++...+...
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~---~~------------~~~v~a-G~V~t~~~a~~~~~a-- 302 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSN---YP------------HVDIIA-GNVVTADQAKNLIDA-- 302 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhh---CC------------CceEEE-CCcCCHHHHHHHHHc--
Confidence 4689999999999999887642 1 1233332221 11 112222 366777777766643
Q ss_pred CCCeEEEe-cC----------C---CeeechhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 132 QAENIVID-LP----------D---WQVIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 132 ~~~~vVv~-~~----------D---WtiIPlENlIA~~q~~~~~lia--~v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
.+|.+.+. +. + +++-.+.++...++..+..+|+ .+.+..|+-. +|..|+|+|++-+-
T Consensus 303 Gad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~k---Ala~GA~~Vm~G~~ 375 (495)
T PTZ00314 303 GADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICK---ALALGADCVMLGSL 375 (495)
T ss_pred CCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHH---HHHcCCCEEEECch
Confidence 46666542 11 2 3333445555455556678999 8899988765 45699999998764
No 68
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=71.85 E-value=22 Score=29.82 Aligned_cols=76 Identities=12% Similarity=0.080 Sum_probs=48.3
Q ss_pred CeEEEEEEecChhh--HhhhccccCCCCeEEEecCCCeeechhhhhhcccCCCceEEE---EcCCHHHHHHHHHHhhccc
Q 025857 109 RRVGSIIEVSTPQE--LQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFA---ISKTPSEAQIFLEALEQGL 183 (247)
Q Consensus 109 ~~va~~~~I~~~e~--le~a~~~~~~~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia---~v~~~~EA~val~~LE~G~ 183 (247)
..+.....+.++.. .+.+. ..+++++++...... -.++.++..++..+.+++. ...|++|+.. +++.|+
T Consensus 54 ~~i~~~~~v~~~~~~~~~~~~--~aGad~i~~h~~~~~-~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~---~~~~~~ 127 (202)
T cd04726 54 KIIVADLKTADAGALEAEMAF--KAGADIVTVLGAAPL-STIKKAVKAAKKYGKEVQVDLIGVEDPEKRAK---LLKLGV 127 (202)
T ss_pred CEEEEEEEeccccHHHHHHHH--hcCCCEEEEEeeCCH-HHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHH---HHHCCC
Confidence 34444445555532 22222 236888888877643 3467888888777777664 4457777653 777899
Q ss_pred CeEEEec
Q 025857 184 GGIVLKV 190 (247)
Q Consensus 184 DGVll~~ 190 (247)
|-|++.|
T Consensus 128 d~v~~~~ 134 (202)
T cd04726 128 DIVILHR 134 (202)
T ss_pred CEEEEcC
Confidence 9999853
No 69
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=71.75 E-value=44 Score=29.50 Aligned_cols=122 Identities=19% Similarity=0.166 Sum_probs=69.9
Q ss_pred chhHHHHHHHhCCcEEEecCcchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeEEE
Q 025857 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~~~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vVv 138 (247)
-.+++.++++.|+..|=+.-.+..-.+.+..+..-.| +.-+..-..|.++++.+.+... .+++++.
T Consensus 24 ~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~------------~~~~iGaGTV~~~~~~~~a~~a--GA~fivs 89 (206)
T PRK09140 24 ALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALG------------DRALIGAGTVLSPEQVDRLADA--GGRLIVT 89 (206)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcC------------CCcEEeEEecCCHHHHHHHHHc--CCCEEEC
Confidence 3678899999999976664211111111222211111 0112223456678887777644 4678765
Q ss_pred ecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC---CHHHHHHHHHhh
Q 025857 139 DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE---DVKAVLALKEYF 203 (247)
Q Consensus 139 ~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~---d~~ev~~l~~~~ 203 (247)
-..|- .++...+..+.-++..+.|++|++.+ .+.|+|-|-+-|. .++.+++++..+
T Consensus 90 p~~~~------~v~~~~~~~~~~~~~G~~t~~E~~~A---~~~Gad~vk~Fpa~~~G~~~l~~l~~~~ 148 (206)
T PRK09140 90 PNTDP------EVIRRAVALGMVVMPGVATPTEAFAA---LRAGAQALKLFPASQLGPAGIKALRAVL 148 (206)
T ss_pred CCCCH------HHHHHHHHCCCcEEcccCCHHHHHHH---HHcCCCEEEECCCCCCCHHHHHHHHhhc
Confidence 44442 23333344455677789999997655 5689999988443 356666666554
No 70
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=71.70 E-value=58 Score=29.01 Aligned_cols=121 Identities=12% Similarity=0.134 Sum_probs=66.9
Q ss_pred CchhHHHHHHHhCCcEEEecC---cchHHHhhcccee---EEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccc-c
Q 025857 58 ESKQVMTAAVERGWNTFVFLS---ENQQLAIDWSTIA---LLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA-D 130 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~---~~~e~~~~lg~i~---~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~-~ 130 (247)
++.+-+..+|+.|++.+++.+ .+.++++++.+-- ++-.+-+.++.+. ..| +-+ ....-++.+... .
T Consensus 85 rs~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~-~~G-----w~~-~~~~~~~~~~~l~~ 157 (241)
T PRK14024 85 RDDESLEAALATGCARVNIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLA-ARG-----WTR-DGGDLWEVLERLDS 157 (241)
T ss_pred CCHHHHHHHHHCCCCEEEECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEec-cCC-----eee-cCccHHHHHHHHHh
Confidence 589999999999999999865 3456666654321 1111112222211 112 111 111222222221 2
Q ss_pred CCCCeEEEecC---------CCeeechhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEec
Q 025857 131 GQAENIVIDLP---------DWQVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 131 ~~~~~vVv~~~---------DWtiIPlENlIA~~q~~~~~lia~--v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
..++.+++... ||..| +.+.. ..+..+++. +.++++++.++...+.|+|||++..
T Consensus 158 ~G~~~iiv~~~~~~g~~~G~d~~~i--~~i~~---~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igr 223 (241)
T PRK14024 158 AGCSRYVVTDVTKDGTLTGPNLELL--REVCA---RTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGK 223 (241)
T ss_pred cCCCEEEEEeecCCCCccCCCHHHH--HHHHh---hCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeH
Confidence 24567777644 34433 22222 234456654 5899999988776688999999865
No 71
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=70.87 E-value=40 Score=35.46 Aligned_cols=137 Identities=15% Similarity=0.149 Sum_probs=77.0
Q ss_pred chhHHHHHHHhCCcEEEecCc--chHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeE
Q 025857 59 SKQVMTAAVERGWNTFVFLSE--NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~~~--~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~v 136 (247)
++-.|-.|-..|+|+|+.--. +.+..++|-+.+. .-|. -++++|.+.++++.+... .++.+
T Consensus 122 d~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~-------------~lGm--e~LvEvh~~~el~~a~~~--ga~ii 184 (695)
T PRK13802 122 TDYQIWEARAHGADLVLLIVAALDDAQLKHLLDLAH-------------ELGM--TVLVETHTREEIERAIAA--GAKVI 184 (695)
T ss_pred CHHHHHHHHHcCCCEeehhHhhcCHHHHHHHHHHHH-------------HcCC--eEEEEeCCHHHHHHHHhC--CCCEE
Confidence 466777888899999884210 0111222211111 1122 278999999999998754 45566
Q ss_pred EEecCCCe--eechh---hhhhcccCCCceEEEEc--CCHHHHHHHHHHhhcccCeEEEe-----cCCHHH-HHHHHHhh
Q 025857 137 VIDLPDWQ--VIPAE---NIVASFQGSGKTVFAIS--KTPSEAQIFLEALEQGLGGIVLK-----VEDVKA-VLALKEYF 203 (247)
Q Consensus 137 Vv~~~DWt--iIPlE---NlIA~~q~~~~~lia~v--~~~~EA~val~~LE~G~DGVll~-----~~d~~e-v~~l~~~~ 203 (247)
=|+-+|-+ -|-++ +|...+. .+.-+|++. ++.+|++.+. +.|+||||+- .+||.. +++|...-
T Consensus 185 GINnRdL~tf~vd~~~t~~L~~~ip-~~~~~VsESGI~~~~d~~~l~---~~G~davLIGeslm~~~dp~~~~~~l~~~~ 260 (695)
T PRK13802 185 GINARNLKDLKVDVNKYNELAADLP-DDVIKVAESGVFGAVEVEDYA---RAGADAVLVGEGVATADDHELAVERLVKAG 260 (695)
T ss_pred EEeCCCCccceeCHHHHHHHHhhCC-CCcEEEEcCCCCCHHHHHHHH---HCCCCEEEECHHhhCCCCHHHHHHHHHhcc
Confidence 67777654 23333 3333332 233345543 6888888776 6999999984 456654 44443322
Q ss_pred cccccccceeeeEE
Q 025857 204 DGRNEVSNLLSLMK 217 (247)
Q Consensus 204 ~~~~~~~~~l~L~~ 217 (247)
. ...+++.++|..
T Consensus 261 ~-~~~~~~~~~~~~ 273 (695)
T PRK13802 261 A-RVKASETTPLSE 273 (695)
T ss_pred c-cccccCCCCccc
Confidence 2 223555555543
No 72
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=70.56 E-value=16 Score=34.83 Aligned_cols=52 Identities=13% Similarity=0.223 Sum_probs=38.2
Q ss_pred CCCeEEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d 192 (247)
+.+.+++.+.++. + +.+++..+.+++..|.|+++|+.+ ++.|+|+|++.-..
T Consensus 82 ~v~~V~~~~G~P~----~--~~~lk~~Gi~v~~~v~s~~~A~~a---~~~GaD~vVaqG~E 133 (320)
T cd04743 82 KPTFALIAGGRPD----Q--ARALEAIGISTYLHVPSPGLLKQF---LENGARKFIFEGRE 133 (320)
T ss_pred CCcEEEEcCCChH----H--HHHHHHCCCEEEEEeCCHHHHHHH---HHcCCCEEEEecCc
Confidence 4555555554332 2 467777789999999999999775 47899999987654
No 73
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=70.35 E-value=15 Score=33.82 Aligned_cols=53 Identities=13% Similarity=0.006 Sum_probs=40.1
Q ss_pred chhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 025857 147 PAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (247)
Q Consensus 147 PlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~ 203 (247)
|++.+-..+. .+.+|...++|.+||+.++ +.|+|.|.|.+=.+++++++.+.+
T Consensus 171 ~v~~~r~~~~-~~~~Igvev~s~eea~~A~---~~gaDyI~ld~~~~e~l~~~~~~~ 223 (268)
T cd01572 171 AVRRARAAAP-FTLKIEVEVETLEQLKEAL---EAGADIIMLDNMSPEELREAVALL 223 (268)
T ss_pred HHHHHHHhCC-CCCeEEEEECCHHHHHHHH---HcCCCEEEECCcCHHHHHHHHHHc
Confidence 4444444332 2347889999999987764 789999999999999888887765
No 74
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=69.31 E-value=68 Score=26.97 Aligned_cols=110 Identities=19% Similarity=0.130 Sum_probs=55.7
Q ss_pred hHHHHHHHhCCcEEEecCcch--HHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeEEE
Q 025857 61 QVMTAAVERGWNTFVFLSENQ--QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (247)
Q Consensus 61 evvT~ALEsG~d~~v~~~~~~--e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vVv 138 (247)
+-+..|++.|++++.++.++. ...+. +.+.+..+++. +.+.++...+. ...+||+.+
T Consensus 72 ~~~~~a~~~gad~vh~~~~~~~~~~~~~-----------------~~~~~~~~g~~--~~t~~e~~~a~--~~gaD~v~~ 130 (212)
T PRK00043 72 DRVDLALAVGADGVHLGQDDLPVADARA-----------------LLGPDAIIGLS--THTLEEAAAAL--AAGADYVGV 130 (212)
T ss_pred ChHHHHHHcCCCEEecCcccCCHHHHHH-----------------HcCCCCEEEEe--CCCHHHHHHHh--HcCCCEEEE
Confidence 456678888888877754221 11111 11234444543 34555554444 336888876
Q ss_pred ecCCCee-----ec---hhhhhhcccCCC-ceEEEEcC-CHHHHHHHHHHhhcccCeEEE-----ecCCHH
Q 025857 139 DLPDWQV-----IP---AENIVASFQGSG-KTVFAISK-TPSEAQIFLEALEQGLGGIVL-----KVEDVK 194 (247)
Q Consensus 139 ~~~DWti-----IP---lENlIA~~q~~~-~~lia~v~-~~~EA~val~~LE~G~DGVll-----~~~d~~ 194 (247)
..-..+. .| ++.+-.-.+..+ ..|++.-. +. +.+-.+++.|+|||++ ..+||.
T Consensus 131 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI~~---~~i~~~~~~Ga~gv~~gs~i~~~~d~~ 198 (212)
T PRK00043 131 GPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGITP---ENAPEVLEAGADGVAVVSAITGAEDPE 198 (212)
T ss_pred CCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCcCH---HHHHHHHHcCCCEEEEeHHhhcCCCHH
Confidence 4222211 11 333322111222 45555432 33 4555888999999997 445554
No 75
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=69.20 E-value=52 Score=28.42 Aligned_cols=125 Identities=13% Similarity=0.118 Sum_probs=60.0
Q ss_pred CchhHHHHHHHhCCcEEEecC---cchHHHhhccce---eEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccC
Q 025857 58 ESKQVMTAAVERGWNTFVFLS---ENQQLAIDWSTI---ALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG 131 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~---~~~e~~~~lg~i---~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~ 131 (247)
.+.+-+..+++.|++.+++.. ++.+..+++.+. .++-++-+.++.+. -.| +.+.++...++.+.....
T Consensus 84 ~~~ed~~~~~~~Ga~~vilg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~-~~g-----~~~~~~~~~~e~~~~~~~ 157 (233)
T PRK00748 84 RSLETVEALLDAGVSRVIIGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVA-TDG-----WLETSGVTAEDLAKRFED 157 (233)
T ss_pred CCHHHHHHHHHcCCCEEEECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEE-Ecc-----CeecCCCCHHHHHHHHHh
Confidence 578889999999999999864 234445544332 22222222222111 000 001111111222222222
Q ss_pred -CCCeEEEecCC----CeeechhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcc-cCeEEEecC
Q 025857 132 -QAENIVIDLPD----WQVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQG-LGGIVLKVE 191 (247)
Q Consensus 132 -~~~~vVv~~~D----WtiIPlENlIA~~q~~~~~lia~--v~~~~EA~val~~LE~G-~DGVll~~~ 191 (247)
.++.+++...+ -+=+.+|.+-.-.+..+..+|+. +.|.+|++.+ ++.| +|||++..-
T Consensus 158 ~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~---~~~g~~~gv~vg~a 222 (233)
T PRK00748 158 AGVKAIIYTDISRDGTLSGPNVEATRELAAAVPIPVIASGGVSSLDDIKAL---KGLGAVEGVIVGRA 222 (233)
T ss_pred cCCCEEEEeeecCcCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHH---HHcCCccEEEEEHH
Confidence 35555655332 01122222222222233456664 4788887755 4567 999998653
No 76
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=69.11 E-value=38 Score=25.70 Aligned_cols=68 Identities=18% Similarity=0.264 Sum_probs=45.8
Q ss_pred EEEEEecChhhHhhhccccCCCCeEEEecCCCeeechhhhhhcc----cCCCceEEEEcCCHHHHHHHHHHhhcccCeEE
Q 025857 112 GSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASF----QGSGKTVFAISKTPSEAQIFLEALEQGLGGIV 187 (247)
Q Consensus 112 a~~~~I~~~e~le~a~~~~~~~~~vVv~~~DWtiIPlENlIA~~----q~~~~~lia~v~~~~EA~val~~LE~G~DGVl 187 (247)
.++.+..+++.++.+-. ..++.+|+...|. -+|+.+.+ .....++++.+.+.+.++.+-. .|+|-|+
T Consensus 44 ~i~gd~~~~~~l~~a~i--~~a~~vv~~~~~d----~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~l~~---~g~d~vi 114 (116)
T PF02254_consen 44 VIYGDATDPEVLERAGI--EKADAVVILTDDD----EENLLIALLARELNPDIRIIARVNDPENAELLRQ---AGADHVI 114 (116)
T ss_dssp EEES-TTSHHHHHHTTG--GCESEEEEESSSH----HHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHH---TT-SEEE
T ss_pred cccccchhhhHHhhcCc--cccCEEEEccCCH----HHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHH---CCcCEEE
Confidence 34556667777777743 3577777777654 56655431 1345799999999999888744 8999887
Q ss_pred E
Q 025857 188 L 188 (247)
Q Consensus 188 l 188 (247)
.
T Consensus 115 ~ 115 (116)
T PF02254_consen 115 S 115 (116)
T ss_dssp E
T ss_pred C
Confidence 5
No 77
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=68.92 E-value=21 Score=30.16 Aligned_cols=105 Identities=15% Similarity=0.123 Sum_probs=58.5
Q ss_pred chhHHHHHHHhCCcEEEecCcc---h---HHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCC
Q 025857 59 SKQVMTAAVERGWNTFVFLSEN---Q---QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 132 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~~~~---~---e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~ 132 (247)
-.+.+..+++.|++.+..+..+ . +.++++..+.. +.+ ..+-|.+.-++-... .
T Consensus 14 ~~~~l~~~~~~gv~~v~lR~k~~~~~~~~~~a~~l~~~~~-------------~~~----~~liin~~~~la~~~----~ 72 (180)
T PF02581_consen 14 FLEQLEAALAAGVDLVQLREKDLSDEELLELARRLAELCQ-------------KYG----VPLIINDRVDLALEL----G 72 (180)
T ss_dssp HHHHHHHHHHTT-SEEEEE-SSS-HHHHHHHHHHHHHHHH-------------HTT----GCEEEES-HHHHHHC----T
T ss_pred HHHHHHHHHHCCCcEEEEcCCCCCccHHHHHHHHHHHHhh-------------cce----EEEEecCCHHHHHhc----C
Confidence 4688999999999999876421 2 33333322221 011 112222323322222 4
Q ss_pred CCeEEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 133 AENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 133 ~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
++-+=+...|. |....-..++ .+..|-+-++|.+|++.+. +.|+|-|.+.|=
T Consensus 73 ~dGvHl~~~~~---~~~~~r~~~~-~~~~ig~S~h~~~e~~~a~---~~g~dYv~~gpv 124 (180)
T PF02581_consen 73 ADGVHLGQSDL---PPAEARKLLG-PDKIIGASCHSLEEAREAE---ELGADYVFLGPV 124 (180)
T ss_dssp -SEEEEBTTSS---SHHHHHHHHT-TTSEEEEEESSHHHHHHHH---HCTTSEEEEETS
T ss_pred CCEEEeccccc---chHHhhhhcc-cceEEEeecCcHHHHHHhh---hcCCCEEEECCc
Confidence 55555556665 4555444443 3446777889999966554 899999999875
No 78
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=68.77 E-value=41 Score=30.47 Aligned_cols=131 Identities=18% Similarity=0.217 Sum_probs=69.0
Q ss_pred EEEEeCchhHHHHHHHhCCcEEEecC----cc--------hHHHhhccc----eeEEeeeeecCCceecCCCCeEEEEEE
Q 025857 53 VWIWTESKQVMTAAVERGWNTFVFLS----EN--------QQLAIDWST----IALLDPLFIKEGEVYDSGDRRVGSIIE 116 (247)
Q Consensus 53 vWiW~~~KevvT~ALEsG~d~~v~~~----~~--------~e~~~~lg~----i~~i~pl~i~~g~~~~~~g~~va~~~~ 116 (247)
+++.-.+.+.+ --|+|+++|++ .| .+-++.+++ ..++. .|.++-..|..++.+..
T Consensus 57 vilfp~~~~~i----~~~aDa~l~~svlns~n~~~i~g~~~~~~~~~~~~~~~~e~i~-----~gYiv~~~~~~v~~v~~ 127 (219)
T cd02812 57 VILFPSNPEAV----SPGADAYLFPSVLNSGDPYWIIGAQAEAAPEVGKIIPWLELIP-----EGYLVLNPDSTVARVTG 127 (219)
T ss_pred EEEeCCCcccc----CcCCCEEEEEeeecCCCchHHHHHHHHHHHHhccccccccccc-----eEEEEECCCCceeeeec
Confidence 55555555555 36799999875 22 344444444 22222 24444444556666665
Q ss_pred ec---ChhhHhhhccccC--CCCeEEEecCCCeeechhhhhhcccCC-Cce--EEEEcCCHHHHHHHHHHhhcccCeEEE
Q 025857 117 VS---TPQELQQLQPADG--QAENIVIDLPDWQVIPAENIVASFQGS-GKT--VFAISKTPSEAQIFLEALEQGLGGIVL 188 (247)
Q Consensus 117 I~---~~e~le~a~~~~~--~~~~vVv~~~DWtiIPlENlIA~~q~~-~~~--lia~v~~~~EA~val~~LE~G~DGVll 188 (247)
.. ++++...-+..+. ....+-++..+=. +|.|.+=+-.+.. +.. +-..++|.++|+.+ ++.|+|+|++
T Consensus 128 a~~~~~~e~~~ayA~aae~~g~~ivyLe~SG~~-~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l---~~aGAD~VVV 203 (219)
T cd02812 128 AKTDLKPEDAAAYALAAEYLGMPIVYLEYSGAY-GPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEM---AEAGADTIVV 203 (219)
T ss_pred cCcCCCHHHHHHHHHHHHHcCCeEEEeCCCCCc-CCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHH---HHcCCCEEEE
Confidence 54 2333222222222 1445555543322 6655443222222 233 33456899998875 4789999999
Q ss_pred ec---CCHHHH
Q 025857 189 KV---EDVKAV 196 (247)
Q Consensus 189 ~~---~d~~ev 196 (247)
-+ +|++.+
T Consensus 204 Gsai~~~p~~~ 214 (219)
T cd02812 204 GNIVEEDPNAA 214 (219)
T ss_pred CchhhCCHHHH
Confidence 87 345443
No 79
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=68.42 E-value=14 Score=34.41 Aligned_cols=42 Identities=17% Similarity=0.105 Sum_probs=35.2
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 025857 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (247)
Q Consensus 159 ~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~ 203 (247)
+.+|..++.|.+||+.++ +.|+|.|+|++=.+++++++.+.+
T Consensus 189 ~~~I~VEv~tleea~eA~---~~gaD~I~LD~~~~e~l~~~v~~~ 230 (277)
T PRK05742 189 GKPVEVEVESLDELRQAL---AAGADIVMLDELSLDDMREAVRLT 230 (277)
T ss_pred CCeEEEEeCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHh
Confidence 357899999999977654 889999999999999888877754
No 80
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=67.68 E-value=89 Score=27.72 Aligned_cols=124 Identities=15% Similarity=0.188 Sum_probs=63.8
Q ss_pred EEEEe--CchhHHHHHHHhCCcEEEecCc---c---hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHh
Q 025857 53 VWIWT--ESKQVMTAAVERGWNTFVFLSE---N---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQ 124 (247)
Q Consensus 53 vWiW~--~~KevvT~ALEsG~d~~v~~~~---~---~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le 124 (247)
+|++- ++.+-+...|+.|++.+++.++ + .+.+++.++=.++--+-..++... ..-...++.++.
T Consensus 81 v~vgGGir~~edv~~~l~~Ga~~viigt~~~~~~~~~~~~~~~~~~~iivslD~~~~~~~--------~~~~~~~~~~~~ 152 (233)
T cd04723 81 LWVDGGIRSLENAQEWLKRGASRVIVGTETLPSDDDEDRLAALGEQRLVLSLDFRGGQLL--------KPTDFIGPEELL 152 (233)
T ss_pred EEEecCcCCHHHHHHHHHcCCCeEEEcceeccchHHHHHHHhcCCCCeEEEEeccCCeec--------cccCcCCHHHHH
Confidence 67765 5789999999999999998753 2 333444544122222222233222 111122444443
Q ss_pred hhccccCCCCeEEEecCC--C--eeechhhhhhcc-cCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 025857 125 QLQPADGQAENIVIDLPD--W--QVIPAENIVASF-QGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 125 ~a~~~~~~~~~vVv~~~D--W--tiIPlENlIA~~-q~~~~~lia--~v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
...... ++.+++..-| = +=..+| ++.++ +..+..+++ .+++.++++.++. .|++||++.+
T Consensus 153 ~~~~~~--~~~li~~di~~~G~~~g~~~~-~~~~i~~~~~ipvi~~GGi~s~edi~~l~~---~G~~~vivGs 219 (233)
T cd04723 153 RRLAKW--PEELIVLDIDRVGSGQGPDLE-LLERLAARADIPVIAAGGVRSVEDLELLKK---LGASGALVAS 219 (233)
T ss_pred HHHHHh--CCeEEEEEcCccccCCCcCHH-HHHHHHHhcCCCEEEeCCCCCHHHHHHHHH---cCCCEEEEeh
Confidence 333322 4444444221 0 112222 22221 122333333 4789999997765 5999999865
No 81
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=67.46 E-value=20 Score=30.10 Aligned_cols=21 Identities=10% Similarity=0.150 Sum_probs=17.0
Q ss_pred CchhHHHHHHHhCCcEEEecC
Q 025857 58 ESKQVMTAAVERGWNTFVFLS 78 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~ 78 (247)
...+.+..+.+.|+|+++++.
T Consensus 67 ~~~~~~~~~~~~gadgv~vh~ 87 (210)
T TIGR01163 67 NPDRYIEDFAEAGADIITVHP 87 (210)
T ss_pred CHHHHHHHHHHcCCCEEEEcc
Confidence 345678888899999988864
No 82
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=66.87 E-value=19 Score=33.92 Aligned_cols=114 Identities=18% Similarity=0.182 Sum_probs=62.4
Q ss_pred EeCchhHHHHHHHhCCcEEEecCc--c----hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccc
Q 025857 56 WTESKQVMTAAVERGWNTFVFLSE--N----QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (247)
Q Consensus 56 W~~~KevvT~ALEsG~d~~v~~~~--~----~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~ 129 (247)
+.+.++.+.+.+|.|++.|.+... + .+.++++.+- .| +..+. ...+.+.++...+..
T Consensus 92 ~~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~---~p------------~v~Vi-~G~v~t~~~A~~l~~- 154 (325)
T cd00381 92 REDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKK---YP------------NVDVI-AGNVVTAEAARDLID- 154 (325)
T ss_pred ChhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHH---CC------------CceEE-ECCCCCHHHHHHHHh-
Confidence 345688999999999998876421 1 1222222110 01 11111 135566666555543
Q ss_pred cCCCCeEEEec-----------CCCe---eechhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 025857 130 DGQAENIVIDL-----------PDWQ---VIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 130 ~~~~~~vVv~~-----------~DWt---iIPlENlIA~~q~~~~~lia--~v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
..+|.+++.. .+|- .-.+.++...+...+..||+ .+.+..++..++ +.|+|||++-+
T Consensus 155 -aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAl---a~GA~~VmiGt 227 (325)
T cd00381 155 -AGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKAL---AAGADAVMLGS 227 (325)
T ss_pred -cCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHH---HcCCCEEEecc
Confidence 3577777621 0121 11223344333333566887 677777766555 58999999943
No 83
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=66.64 E-value=43 Score=28.03 Aligned_cols=68 Identities=15% Similarity=0.191 Sum_probs=41.2
Q ss_pred CCCeEEEecC--CCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 025857 132 QAENIVIDLP--DWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (247)
Q Consensus 132 ~~~~vVv~~~--DWtiIPlENlIA~~q--~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~ 200 (247)
..+-++++.. |.....--.++..++ ..+..++..... ++......+++.|++|.+.+|.++.++.+.-
T Consensus 49 ~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~~~iIvls~~-~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai 120 (216)
T PRK10840 49 DAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMN-NNPAILSAVLDLDIEGIVLKQGAPTDLPKAL 120 (216)
T ss_pred CCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCCCcEEEEEec-CCHHHHHHHHHCCCeEEEECCCCHHHHHHHH
Confidence 4566777643 321112223444433 234566665544 4555677889999999999999998765443
No 84
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=66.61 E-value=68 Score=27.97 Aligned_cols=108 Identities=16% Similarity=0.170 Sum_probs=57.8
Q ss_pred EEeeeeecCCceecCC-CCeEEEEEEecChhhHhhhccccCCCCeEEEecCCCe---eechhhhhhcc-cCCCceEEE--
Q 025857 92 LLDPLFIKEGEVYDSG-DRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQ---VIPAENIVASF-QGSGKTVFA-- 164 (247)
Q Consensus 92 ~i~pl~i~~g~~~~~~-g~~va~~~~I~~~e~le~a~~~~~~~~~vVv~~~DWt---iIPlENlIA~~-q~~~~~lia-- 164 (247)
+|..+.+.+|..++.. |.+--..+...++.++-..... ...+++.+...|=. ..+.-+.|.++ +..+..++.
T Consensus 5 iip~idl~~g~~v~~~~g~~~~~~~~~~~~~e~a~~~~~-~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~~~~l~v~G 83 (241)
T PRK13585 5 VIPAVDMKGGKCVQLVQGEPGTETVSYGDPVEVAKRWVD-AGAETLHLVDLDGAFEGERKNAEAIEKIIEAVGVPVQLGG 83 (241)
T ss_pred EEEEEEeECCeEEEeeccccCCceEECCCHHHHHHHHHH-cCCCEEEEEechhhhcCCcccHHHHHHHHHHcCCcEEEcC
Confidence 4444666677766543 3221123344566665555433 34677766655421 11212233322 122233333
Q ss_pred EcCCHHHHHHHHHHhhcccCeEEEecCC---HHHHHHHHHhh
Q 025857 165 ISKTPSEAQIFLEALEQGLGGIVLKVED---VKAVLALKEYF 203 (247)
Q Consensus 165 ~v~~~~EA~val~~LE~G~DGVll~~~d---~~ev~~l~~~~ 203 (247)
.+++.++++.++. .|+|+|++.+.. |+.+.++.+.+
T Consensus 84 Gi~~~~~~~~~~~---~Ga~~v~iGs~~~~~~~~~~~i~~~~ 122 (241)
T PRK13585 84 GIRSAEDAASLLD---LGVDRVILGTAAVENPEIVRELSEEF 122 (241)
T ss_pred CcCCHHHHHHHHH---cCCCEEEEChHHhhChHHHHHHHHHh
Confidence 4589999998885 799999999854 44555555543
No 85
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=66.35 E-value=21 Score=32.74 Aligned_cols=54 Identities=19% Similarity=0.091 Sum_probs=40.6
Q ss_pred chhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 025857 147 PAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (247)
Q Consensus 147 PlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~~ 204 (247)
|++.+-+.+. .+..|...++|.+||+.++ +.|+|.|+|.+=.+++++++.+++.
T Consensus 170 ~v~~~r~~~~-~~~~I~vev~t~eea~~A~---~~gaD~I~ld~~~~e~l~~~v~~i~ 223 (269)
T cd01568 170 AVKRARAAAP-FEKKIEVEVETLEEAEEAL---EAGADIIMLDNMSPEELKEAVKLLK 223 (269)
T ss_pred HHHHHHHhCC-CCCeEEEecCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHhc
Confidence 3444444332 2357889999999988875 5799999999999998888777654
No 86
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=66.25 E-value=2.9 Score=39.28 Aligned_cols=17 Identities=29% Similarity=0.792 Sum_probs=15.0
Q ss_pred eeeeeccCCCCCCccCC
Q 025857 231 RVCVDLCSLMRPGWILC 247 (247)
Q Consensus 231 RVCVDTcSlm~~GEGM~ 247 (247)
.||+|||..+..|.|+.
T Consensus 171 gvCiDtcH~~Aagy~~~ 187 (280)
T COG0648 171 GVCIDTCHAFAAGYDII 187 (280)
T ss_pred EEEEEchhhhhccCCcC
Confidence 48999999999999863
No 87
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=65.95 E-value=38 Score=29.59 Aligned_cols=71 Identities=14% Similarity=0.191 Sum_probs=47.0
Q ss_pred cCCCCeEEEecCCCeeechhhhhhcc-cCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 130 DGQAENIVIDLPDWQVIPAENIVASF-QGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 130 ~~~~~~vVv~~~DWtiIPlENlIA~~-q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
....|.++++-.-+..=.+|-+=.=. +..+.+ +.+....++.....++|+.|++|.+++..+++++.+.-+
T Consensus 44 ~~~pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~-vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~ 115 (211)
T COG2197 44 ELKPDVVLLDLSMPGMDGLEALKQLRARGPDIK-VVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIR 115 (211)
T ss_pred hcCCCEEEEcCCCCCCChHHHHHHHHHHCCCCc-EEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Confidence 34578888886666655544332211 223333 445566777888899999999999999999987654433
No 88
>PLN02765 pyruvate kinase
Probab=65.92 E-value=27 Score=35.65 Aligned_cols=135 Identities=16% Similarity=0.209 Sum_probs=86.2
Q ss_pred CchhHH-HHHHHhCCcEEEecC-cchHHHhhccceeEEeeeeecCCceecCCCC-eEEEEEEecChhhHhhhccccCCCC
Q 025857 58 ESKQVM-TAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDR-RVGSIIEVSTPQELQQLQPADGQAE 134 (247)
Q Consensus 58 ~~Kevv-T~ALEsG~d~~v~~~-~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~-~va~~~~I~~~e~le~a~~~~~~~~ 134 (247)
.|++.+ .-|++-|+|.|-..- .+++.+.++.++ ++..|. .+..+..|.+++.++.+.+.....|
T Consensus 207 kD~~di~~f~~~~~vD~ia~SFVr~a~DI~~~r~~-------------l~~~g~~~~~IiaKIE~~~av~nl~eIi~~sD 273 (526)
T PLN02765 207 KDKEVISTWGVPNKIDFLSLSYTRHAEDVREAREF-------------LSSLGLSQTQIFAKIENVEGLTHFDEILQEAD 273 (526)
T ss_pred hHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHhcCCCCCcEEEEECCHHHHHHHHHHHHhcC
Confidence 467777 689999999644210 123333332222 112222 4568899999999999988888889
Q ss_pred eEEEecCCCee-echhhhhh-------cccCCCceEEE----------EcCCHHHHHHHHHHhhcccCeEEEecCC----
Q 025857 135 NIVIDLPDWQV-IPAENIVA-------SFQGSGKTVFA----------ISKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (247)
Q Consensus 135 ~vVv~~~DWti-IPlENlIA-------~~q~~~~~lia----------~v~~~~EA~val~~LE~G~DGVll~~~d---- 192 (247)
.++|-..|=-+ ||+|.+-. .....+.-+|+ ...+-.|+--...+.--|+|+|+|..+.
T Consensus 274 gIMVARGDLGvEip~e~vp~~QK~iI~~c~~~gKPVI~TQmLeSMi~np~PTRAEvsDVaNAV~DGaDavMLSgETA~G~ 353 (526)
T PLN02765 274 GIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGADAILLGAETLRGL 353 (526)
T ss_pred EEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCeEEehhhhHHhhCCCCChhhHHHHHHHHHhCCCEEEecchhcCCC
Confidence 98887766543 77777633 22222222343 1125567777888899999999999654
Q ss_pred --HHHHHHHHHhhcc
Q 025857 193 --VKAVLALKEYFDG 205 (247)
Q Consensus 193 --~~ev~~l~~~~~~ 205 (247)
.+.|+-+.+++.+
T Consensus 354 yPveaV~~m~~I~~~ 368 (526)
T PLN02765 354 YPVETISTVGRICAE 368 (526)
T ss_pred CHHHHHHHHHHHHHH
Confidence 4556667776654
No 89
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=65.64 E-value=32 Score=33.76 Aligned_cols=118 Identities=17% Similarity=0.138 Sum_probs=68.6
Q ss_pred CchhHHHHHHHhCCcEEEecCcchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeEE
Q 025857 58 ESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 137 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vV 137 (247)
++.+.+.+.+|.|+|.|.+...|-.....+..|+.+...+ -+..+. ...|.++++...+... .+|.+.
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~---------~~~~vi-~G~v~t~~~a~~l~~a--Gad~i~ 291 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTY---------PDLDII-AGNVATAEQAKALIDA--GADGLR 291 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhC---------CCCCEE-EEeCCCHHHHHHHHHh--CCCEEE
Confidence 4578888999999999887652211111111222221100 011222 2567788877776643 456654
Q ss_pred Ee-c----------CCCe---eechhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 025857 138 ID-L----------PDWQ---VIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 138 v~-~----------~DWt---iIPlENlIA~~q~~~~~lia--~v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
|- + .+|- .=.+.++...++..+..||+ .+++..|+..| |+.|+|.|++-+
T Consensus 292 vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kA---la~GA~~V~~G~ 357 (450)
T TIGR01302 292 VGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKA---LAAGADAVMLGS 357 (450)
T ss_pred ECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHH---HHcCCCEEEECc
Confidence 33 1 1343 33344555545556778999 88999998765 566999999865
No 90
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=65.27 E-value=30 Score=32.27 Aligned_cols=109 Identities=10% Similarity=0.082 Sum_probs=59.1
Q ss_pred chhHHHHHHHhCCcEEEecCcc-hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeEE
Q 025857 59 SKQVMTAAVERGWNTFVFLSEN-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 137 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~~~~-~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vV 137 (247)
..+.+..++|.|++.|.+.-.+ .+.++++ +..|.+ ++..+.+.+..+.+... .+|.++
T Consensus 76 ~~~~~~~~~~~~v~~v~~~~g~p~~~i~~l-----------------k~~g~~--v~~~v~s~~~a~~a~~~--GaD~Iv 134 (307)
T TIGR03151 76 VDELVDLVIEEKVPVVTTGAGNPGKYIPRL-----------------KENGVK--VIPVVASVALAKRMEKA--GADAVI 134 (307)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcHHHHHHH-----------------HHcCCE--EEEEcCCHHHHHHHHHc--CCCEEE
Confidence 3678888999999988763211 1122221 122322 34566777665555433 588888
Q ss_pred EecCCC----eeechhhhhhcccC-CCceEEEE--cCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 138 IDLPDW----QVIPAENIVASFQG-SGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 138 v~~~DW----tiIPlENlIA~~q~-~~~~lia~--v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
+.+.+. .-.|.-.++.++.. .+..||+. +.|.+++.- +|+.|+|||++-+.
T Consensus 135 v~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~---al~~GA~gV~iGt~ 192 (307)
T TIGR03151 135 AEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMAA---AFALGAEAVQMGTR 192 (307)
T ss_pred EECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHH---HHHcCCCEeecchH
Confidence 865311 12233334443322 12345543 456665554 45579999998763
No 91
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=64.48 E-value=54 Score=27.82 Aligned_cols=87 Identities=13% Similarity=0.019 Sum_probs=52.3
Q ss_pred EEEEEecChh--hHhhhccccCCCCeEEEecCCCeeechhhhhhcccCCCceEEEEcCCH----HHHHHHHHHhhcccCe
Q 025857 112 GSIIEVSTPQ--ELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTP----SEAQIFLEALEQGLGG 185 (247)
Q Consensus 112 a~~~~I~~~e--~le~a~~~~~~~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~----~EA~val~~LE~G~DG 185 (247)
..-..+.|+. +.+.+. ...++++++....-. .=++.++...++.+.+++..+.++ ++++.+ ++.|+|-
T Consensus 56 ~~d~k~~d~~~~~~~~~~--~~Gad~i~vh~~~~~-~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~---~~~g~d~ 129 (206)
T TIGR03128 56 LADLKTMDAGEYEAEQAF--AAGADIVTVLGVADD-ATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKEL---KELGADY 129 (206)
T ss_pred EEEEeeccchHHHHHHHH--HcCCCEEEEeccCCH-HHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHH---HHcCCCE
Confidence 3333444655 333333 335888888876421 113667777778788888775443 455444 6679999
Q ss_pred EEEecC---------CHHHHHHHHHhhc
Q 025857 186 IVLKVE---------DVKAVLALKEYFD 204 (247)
Q Consensus 186 Vll~~~---------d~~ev~~l~~~~~ 204 (247)
|-+.|. .++.++++++.+.
T Consensus 130 v~~~pg~~~~~~~~~~~~~i~~l~~~~~ 157 (206)
T TIGR03128 130 IGVHTGLDEQAKGQNPFEDLQTILKLVK 157 (206)
T ss_pred EEEcCCcCcccCCCCCHHHHHHHHHhcC
Confidence 888753 4556666666543
No 92
>KOG3997 consensus Major apurinic/apyrimidinic endonuclease/3'-repair diesterase APN1 [Replication, recombination and repair]
Probab=64.38 E-value=2.3 Score=39.64 Aligned_cols=13 Identities=38% Similarity=0.948 Sum_probs=11.7
Q ss_pred eeeeeccCCCCCC
Q 025857 231 RVCVDLCSLMRPG 243 (247)
Q Consensus 231 RVCVDTcSlm~~G 243 (247)
+||+|||..|.-|
T Consensus 175 gVClDTCH~FaaG 187 (281)
T KOG3997|consen 175 GVCLDTCHTFAAG 187 (281)
T ss_pred eeeHhhhhhhccc
Confidence 6999999999877
No 93
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=63.81 E-value=43 Score=28.20 Aligned_cols=105 Identities=15% Similarity=0.137 Sum_probs=55.3
Q ss_pred hhHHHHHHHhCCcEEEecCcc---hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeE
Q 025857 60 KQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~~~---~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~v 136 (247)
.+.+..++++|++.|.++--+ .+..+.+.++.-+. +.-|.. .++ . ++.+.+... .++.+
T Consensus 24 ~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~----------~~~~~~--l~~--~--~~~~~a~~~--gad~v 85 (212)
T PRK00043 24 LEVVEAALEGGVTLVQLREKGLDTRERLELARALKELC----------RRYGVP--LIV--N--DRVDLALAV--GADGV 85 (212)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHH----------HHhCCe--EEE--e--ChHHHHHHc--CCCEE
Confidence 467889999999998774211 22222222221110 011111 111 1 334444332 45665
Q ss_pred EEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 025857 137 VIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (247)
Q Consensus 137 Vv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~ 189 (247)
.+...+ .|.+. +..+++.+..+-..++|.+|++.+. +.|+|-|.+.
T Consensus 86 h~~~~~---~~~~~-~~~~~~~~~~~g~~~~t~~e~~~a~---~~gaD~v~~~ 131 (212)
T PRK00043 86 HLGQDD---LPVAD-ARALLGPDAIIGLSTHTLEEAAAAL---AAGADYVGVG 131 (212)
T ss_pred ecCccc---CCHHH-HHHHcCCCCEEEEeCCCHHHHHHHh---HcCCCEEEEC
Confidence 554433 33332 3444455566777788888876554 7899999874
No 94
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=63.79 E-value=52 Score=32.73 Aligned_cols=104 Identities=13% Similarity=0.116 Sum_probs=63.7
Q ss_pred hhHHHHHHHhCCcEEEecCcchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeEEEe
Q 025857 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vVv~ 139 (247)
+.+...-.+.|.+-+++++ |.++++++.+. | .-.++.+.++++-++.+.. .+++.+++.
T Consensus 430 ~~la~~L~~~g~~vvvId~-d~~~~~~~~~~-----------------g-~~~i~GD~~~~~~L~~a~i--~~a~~viv~ 488 (558)
T PRK10669 430 SLLGEKLLAAGIPLVVIET-SRTRVDELRER-----------------G-IRAVLGNAANEEIMQLAHL--DCARWLLLT 488 (558)
T ss_pred HHHHHHHHHCCCCEEEEEC-CHHHHHHHHHC-----------------C-CeEEEcCCCCHHHHHhcCc--cccCEEEEE
Confidence 4555555567888777763 35555554321 1 1235556667777776643 367777777
Q ss_pred cCCCeeechhh--hhh--cccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 140 LPDWQVIPAEN--IVA--SFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 140 ~~DWtiIPlEN--lIA--~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
..|. -+| ++. .....+.++++.+++.++.+.. .+.|+|-|+.+.+
T Consensus 489 ~~~~----~~~~~iv~~~~~~~~~~~iiar~~~~~~~~~l---~~~Gad~vv~p~~ 537 (558)
T PRK10669 489 IPNG----YEAGEIVASAREKRPDIEIIARAHYDDEVAYI---TERGANQVVMGER 537 (558)
T ss_pred cCCh----HHHHHHHHHHHHHCCCCeEEEEECCHHHHHHH---HHcCCCEEEChHH
Confidence 6553 233 222 2224457899999999988876 4689998874433
No 95
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=63.71 E-value=15 Score=32.37 Aligned_cols=89 Identities=17% Similarity=0.064 Sum_probs=48.9
Q ss_pred EEEEEEecChhhHhhhccccCCCCeEEEecCCCeeechhhhhhcccCC-CceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 025857 111 VGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGS-GKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (247)
Q Consensus 111 va~~~~I~~~e~le~a~~~~~~~~~vVv~~~DWtiIPlENlIA~~q~~-~~~lia~v~~~~EA~val~~LE~G~DGVll~ 189 (247)
+-.++...++++.....+..-....-+++.+ ++.-.....|+++... +..++-.+.+.=....+-.+++.|+|+++..
T Consensus 12 ~~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt-~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp 90 (206)
T PRK09140 12 LIAILRGITPDEALAHVGALIEAGFRAIEIP-LNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTP 90 (206)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHCCCCEEEEe-CCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECC
Confidence 3345555677776666544433333344443 2223444455555332 2234444443333334455678999999999
Q ss_pred cCCHHHHHHHH
Q 025857 190 VEDVKAVLALK 200 (247)
Q Consensus 190 ~~d~~ev~~l~ 200 (247)
..|++-++..+
T Consensus 91 ~~~~~v~~~~~ 101 (206)
T PRK09140 91 NTDPEVIRRAV 101 (206)
T ss_pred CCCHHHHHHHH
Confidence 99887665443
No 96
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=63.67 E-value=72 Score=29.40 Aligned_cols=89 Identities=10% Similarity=0.124 Sum_probs=56.4
Q ss_pred EEEecChhhHhhhccccCCCCeEEEecCCC-----eeechhhhhhcccC---CCceEEEEcCCHHH---HHHHHHHhhcc
Q 025857 114 IIEVSTPQELQQLQPADGQAENIVIDLPDW-----QVIPAENIVASFQG---SGKTVFAISKTPSE---AQIFLEALEQG 182 (247)
Q Consensus 114 ~~~I~~~e~le~a~~~~~~~~~vVv~~~DW-----tiIPlENlIA~~q~---~~~~lia~v~~~~E---A~val~~LE~G 182 (247)
|+.-+.++-++.+. ...+|.+|++..|= +----+|++..++. .+..++..++..+. ..-...+|..|
T Consensus 8 fvP~~~~~~~~ka~--~~gaD~vilDLEDav~~~~k~~AR~~v~~~l~~~~~~~~~~~VRIn~~~~~~~~~di~~~l~~g 85 (288)
T TIGR01588 8 FVPGNNPAMISDAF--IYGADSVMFDLEDAVSLAEKDSARLLVYEALQTPDYGDTETVVRINGLDTPFGLADIKAVVKAG 85 (288)
T ss_pred ecCCCCHHHHHhhh--hcCCCEEEEecccCCCcchHHHHHHHHHHHHhccCCCCCEEEEEECCCCChhHHHHHHHHHhcC
Confidence 33444555554443 23689999988763 22222334444422 34578999985443 45566778899
Q ss_pred cCeEEEe-cCCHHHHHHHHHhhc
Q 025857 183 LGGIVLK-VEDVKAVLALKEYFD 204 (247)
Q Consensus 183 ~DGVll~-~~d~~ev~~l~~~~~ 204 (247)
++||+|+ .++++++..+.+.+.
T Consensus 86 ~~givlPKv~s~~~v~~~~~~l~ 108 (288)
T TIGR01588 86 VDVVRLPKTDTAEDIHELEKLIE 108 (288)
T ss_pred CCEEEeCCCCCHHHHHHHHHHHH
Confidence 9999985 567888888877764
No 97
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=63.59 E-value=68 Score=28.51 Aligned_cols=105 Identities=12% Similarity=0.112 Sum_probs=60.1
Q ss_pred EeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeEEEecCCC----eeechhhhhhcccCCCceEEE--Ec
Q 025857 93 LDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDW----QVIPAENIVASFQGSGKTVFA--IS 166 (247)
Q Consensus 93 i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vVv~~~DW----tiIPlENlIA~~q~~~~~lia--~v 166 (247)
|..+.+.+|..++..+.. ......++.++....... .++.+.+...|= +-..++.+=.-.+..+..+++ .+
T Consensus 7 ip~idl~~g~~V~~~~~~--~~~~~~d~~~~a~~~~~~-G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~~~ipv~~~GGi 83 (253)
T PRK02083 7 IPCLDVKDGRVVKGVNFV--NLRDAGDPVELAKRYNEE-GADELVFLDITASSEGRDTMLDVVERVAEQVFIPLTVGGGI 83 (253)
T ss_pred EEEEEEECCEEEEeEEec--ceeecCCHHHHHHHHHHc-CCCEEEEEeCCcccccCcchHHHHHHHHHhCCCCEEeeCCC
Confidence 333556677666544311 123455777666665543 355555554432 223343331111222233444 67
Q ss_pred CCHHHHHHHHHHhhcccCeEEEec---CCHHHHHHHHHhh
Q 025857 167 KTPSEAQIFLEALEQGLGGIVLKV---EDVKAVLALKEYF 203 (247)
Q Consensus 167 ~~~~EA~val~~LE~G~DGVll~~---~d~~ev~~l~~~~ 203 (247)
++.++++.++. .|+|+|++.+ .+|+.+.++.+.+
T Consensus 84 ~s~~~~~~~l~---~Ga~~Viigt~~l~~p~~~~ei~~~~ 120 (253)
T PRK02083 84 RSVEDARRLLR---AGADKVSINSAAVANPELISEAADRF 120 (253)
T ss_pred CCHHHHHHHHH---cCCCEEEEChhHhhCcHHHHHHHHHc
Confidence 89999988876 6999999999 6777777766654
No 98
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=63.45 E-value=28 Score=31.09 Aligned_cols=115 Identities=12% Similarity=0.144 Sum_probs=59.8
Q ss_pred CchhHHHHHHHhCCcEEEecC---cchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecC-hhhHhhhccccCCC
Q 025857 58 ESKQVMTAAVERGWNTFVFLS---ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST-PQELQQLQPADGQA 133 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~---~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~-~e~le~a~~~~~~~ 133 (247)
.-.+.+..+.+.|+|+++++. |..+...++- ..+++.|.+.+..+.-.+ .+.++.... ..
T Consensus 89 ~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~-------------~~~~~~Gl~~~~~v~p~T~~e~l~~~~~---~~ 152 (244)
T PRK13125 89 SLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYV-------------EIIKNKGLKPVFFTSPKFPDLLIHRLSK---LS 152 (244)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHH-------------HHHHHcCCCEEEEECCCCCHHHHHHHHH---hC
Confidence 446678999999999999973 1011111110 112344556556555544 344444443 33
Q ss_pred CeEE-Ee---cCCCeeech-hhhhhcccCC--CceEE--EEcCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 134 ENIV-ID---LPDWQVIPA-ENIVASFQGS--GKTVF--AISKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 134 ~~vV-v~---~~DWtiIPl-ENlIA~~q~~--~~~li--a~v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
+.++ +. ..+.+.+|- .+-+..+.+. +..|+ ..+++.++++ .+++.|+||+|+-+.
T Consensus 153 ~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~---~~~~~gaD~vvvGSa 216 (244)
T PRK13125 153 PLFIYYGLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDAR---DALSAGADGVVVGTA 216 (244)
T ss_pred CCEEEEEeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHH---HHHHcCCCEEEECHH
Confidence 3333 22 123343332 3444444332 11232 2346777666 556899999998763
No 99
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=63.04 E-value=67 Score=27.51 Aligned_cols=114 Identities=17% Similarity=0.183 Sum_probs=58.8
Q ss_pred chhHHHHHHHhCCcE--EEecCc----c-hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccC
Q 025857 59 SKQVMTAAVERGWNT--FVFLSE----N-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG 131 (247)
Q Consensus 59 ~KevvT~ALEsG~d~--~v~~~~----~-~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~ 131 (247)
+.+.+..|++.|+|. |++.+. - .+.++++.++.. +.-+.+++++.- +.+++..++.. -
T Consensus 8 ~~ed~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~-------------~~~~~V~v~vn~-~~~~i~~ia~~-~ 72 (203)
T cd00405 8 TLEDALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALP-------------PFVKRVGVFVNE-DLEEILEIAEE-L 72 (203)
T ss_pred CHHHHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCC-------------CCCcEEEEEeCC-CHHHHHHHHHh-c
Confidence 467889999999998 444221 1 344444433321 101234443221 23433344322 2
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC-CCceEE--EEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG-SGKTVF--AISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~-~~~~li--a~v~~~~EA~val~~LE~G~DGVll~~~d~ 193 (247)
..+.|-+...+ |.+.+ +++.. .+.+++ ..+++..+... ....+.|+|.+++++...
T Consensus 73 ~~d~Vqlhg~e----~~~~~-~~l~~~~~~~~i~~i~~~~~~~~~~-~~~~~~~aD~il~dt~~~ 131 (203)
T cd00405 73 GLDVVQLHGDE----SPEYC-AQLRARLGLPVIKAIRVKDEEDLEK-AAAYAGEVDAILLDSKSG 131 (203)
T ss_pred CCCEEEECCCC----CHHHH-HHHHhhcCCcEEEEEecCChhhHHH-hhhccccCCEEEEcCCCC
Confidence 56888888776 33322 22221 122344 44444444433 355678999999988643
No 100
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=63.03 E-value=11 Score=35.21 Aligned_cols=133 Identities=15% Similarity=0.235 Sum_probs=91.2
Q ss_pred eCchhHHHHHHHhCCcEEEecC-cchHHHhhccceeEEeeeeecC--------------CceecCCCCeEEEEEEecChh
Q 025857 57 TESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKE--------------GEVYDSGDRRVGSIIEVSTPQ 121 (247)
Q Consensus 57 ~~~KevvT~ALEsG~d~~v~~~-~~~e~~~~lg~i~~i~pl~i~~--------------g~~~~~~g~~va~~~~I~~~e 121 (247)
.-+..++..+|..|+.++++|- +++|.++.+-+-.+-.|+-+.+ .+-+..-+..+++++.|++.+
T Consensus 76 ~g~~~~Ikq~LD~GAqtlliPmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~~i~dyl~~An~~~~~lvqiEtr~ 155 (255)
T COG3836 76 VGDPVMIKQLLDIGAQTLLIPMVDTAEQARQAVAATRYPPLGERGVGSALARASRFGRIADYLAQANDEICLLVQIETRA 155 (255)
T ss_pred CCCHHHHHHHHccccceeeeeccCCHHHHHHHHHhccCCCCCccccchhhhhhhhcCCHHHHHHhcccceEEEEEEccHH
Confidence 3468999999999999999985 5688888877777766754433 133345567899999999999
Q ss_pred hHhhhcc--ccCCCCeEEEecCC--------Ce------eechhhhhhcccCCCceEEEE-cCCHHHHHHHHHHhhcccC
Q 025857 122 ELQQLQP--ADGQAENIVIDLPD--------WQ------VIPAENIVASFQGSGKTVFAI-SKTPSEAQIFLEALEQGLG 184 (247)
Q Consensus 122 ~le~a~~--~~~~~~~vVv~~~D--------Wt------iIPlENlIA~~q~~~~~lia~-v~~~~EA~val~~LE~G~D 184 (247)
-++.+-. .....|-|++-..| |+ .=+.|+++++....+ |.... ..+++.|+-+ |+.|+.
T Consensus 156 gl~nLDaIaaveGVDgvFiGPaDLaas~G~~gn~~hpeV~~aI~~~~~~i~aaG-Kaagil~~~p~~a~~y---l~lGa~ 231 (255)
T COG3836 156 GLDNLDAIAAVEGVDGVFIGPADLAASLGHLGNPGHPEVQAAIEHIIARIRAAG-KAAGILAADPADARRY---LALGAT 231 (255)
T ss_pred HHHHHHHHHccCCCCeEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcC-CccccccCCHHHHHHH---HHhCCe
Confidence 9888743 23457776665444 11 235677777654433 43333 3577777765 578998
Q ss_pred eEEEecCCH
Q 025857 185 GIVLKVEDV 193 (247)
Q Consensus 185 GVll~~~d~ 193 (247)
=|.+-.|..
T Consensus 232 fvavG~D~~ 240 (255)
T COG3836 232 FVAVGSDTG 240 (255)
T ss_pred EEEEeccHH
Confidence 888877643
No 101
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=62.69 E-value=6.9 Score=35.77 Aligned_cols=71 Identities=14% Similarity=0.189 Sum_probs=39.7
Q ss_pred ChhhHhhhccccC---CCCeEEEec-CC-CeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 025857 119 TPQELQQLQPADG---QAENIVIDL-PD-WQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 119 ~~e~le~a~~~~~---~~~~vVv~~-~D-WtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
+++++-....++. +.+++-++. .+ +.-+| |.+++.........+-.-.-...++.+.+.++.|+|-||+-+
T Consensus 137 ~~~~iaa~~alA~~~~g~~~iYLEaGSGa~~~v~-~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn 212 (230)
T PF01884_consen 137 DKPEIAAAAALAAEYLGMPIIYLEAGSGAYGPVP-EEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGN 212 (230)
T ss_dssp SHHHHHHHHHHHHHHTT-SEEEEE--TTSSS-HH-HHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESC
T ss_pred CcHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCcc-HHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECC
Confidence 4555444443332 567888887 54 33333 777776544333333333445555566677899999999876
No 102
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=61.81 E-value=70 Score=27.51 Aligned_cols=51 Identities=18% Similarity=0.278 Sum_probs=37.3
Q ss_pred CCCeEEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
..+.+++... +.++++..+.+.+..++..+.+.++++. +.+.|+|++++.+
T Consensus 80 g~d~v~l~~~-----~~~~~~~~~~~~~i~~i~~v~~~~~~~~---~~~~gad~i~~~~ 130 (236)
T cd04730 80 GVPVVSFSFG-----PPAEVVERLKAAGIKVIPTVTSVEEARK---AEAAGADALVAQG 130 (236)
T ss_pred CCCEEEEcCC-----CCHHHHHHHHHcCCEEEEeCCCHHHHHH---HHHcCCCEEEEeC
Confidence 4677776544 4467777776667788888888888765 4568999999854
No 103
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=61.77 E-value=40 Score=30.32 Aligned_cols=113 Identities=21% Similarity=0.139 Sum_probs=66.8
Q ss_pred hHHHHHHHhCCcEEEecC-cchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeEEEe
Q 025857 61 QVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (247)
Q Consensus 61 evvT~ALEsG~d~~v~~~-~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vVv~ 139 (247)
.+..+|.+.|+.++=... +|...+++.-++.+|.-+-- ..+..+ +|+.- +-++...+.. .+++.+=++
T Consensus 3 ~mA~Aa~~gGA~giR~~~~~dI~aik~~v~lPIIGi~K~----~y~~~~----V~ITP-T~~ev~~l~~--aGadIIAlD 71 (192)
T PF04131_consen 3 RMAKAAEEGGAVGIRANGVEDIRAIKKAVDLPIIGIIKR----DYPDSD----VYITP-TLKEVDALAE--AGADIIALD 71 (192)
T ss_dssp HHHHHHHHCT-SEEEEESHHHHHHHHTTB-S-EEEE-B-----SBTTSS------BS--SHHHHHHHHH--CT-SEEEEE
T ss_pred HHHHHHHHCCceEEEcCCHHHHHHHHHhcCCCEEEEEec----cCCCCC----eEECC-CHHHHHHHHH--cCCCEEEEe
Confidence 356789999999988754 66777777777777764110 011111 22211 3344444443 357777777
Q ss_pred cCC-CeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEE
Q 025857 140 LPD-WQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIV 187 (247)
Q Consensus 140 ~~D-WtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVl 187 (247)
+++ ..=-+|+.++.+++....-+.|-+++.|||+.+ .+.|+|=|=
T Consensus 72 aT~R~Rp~~l~~li~~i~~~~~l~MADist~ee~~~A---~~~G~D~I~ 117 (192)
T PF04131_consen 72 ATDRPRPETLEELIREIKEKYQLVMADISTLEEAINA---AELGFDIIG 117 (192)
T ss_dssp -SSSS-SS-HHHHHHHHHHCTSEEEEE-SSHHHHHHH---HHTT-SEEE
T ss_pred cCCCCCCcCHHHHHHHHHHhCcEEeeecCCHHHHHHH---HHcCCCEEE
Confidence 652 222899999999988877889999999999765 577988554
No 104
>PRK08114 cystathionine beta-lyase; Provisional
Probab=61.68 E-value=16 Score=35.49 Aligned_cols=124 Identities=11% Similarity=0.171 Sum_probs=73.4
Q ss_pred hhHHHHHHHhCCcEEEecCcchHHHhhccceeEEee---eee-cCC---------ceecCCCCeEEEEEEecChhhHhhh
Q 025857 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDP---LFI-KEG---------EVYDSGDRRVGSIIEVSTPQELQQL 126 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~~~~e~~~~lg~i~~i~p---l~i-~~g---------~~~~~~g~~va~~~~I~~~e~le~a 126 (247)
=|-.-++||.|-.+++|++.......-+..+ +.| +++ +.. ..++..|.++ .++...|.++++.+
T Consensus 67 le~~la~LEg~~~a~~~~SGmaAi~~~~~~l--l~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v-~~vd~~d~~~l~~~ 143 (395)
T PRK08114 67 LQEAMCELEGGAGCALYPCGAAAVANAILAF--VEQGDHVLMTGTAYEPTQDFCSKILSKLGVTT-TWFDPLIGADIAKL 143 (395)
T ss_pred HHHHHHHHhCCCeEEEEhHHHHHHHHHHHHH--cCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEE-EEECCCCHHHHHHh
Confidence 3455678999999999997643332212111 122 222 221 2234456443 34455566666655
Q ss_pred ccccCCCCeEEEecC---CCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 025857 127 QPADGQAENIVIDLP---DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (247)
Q Consensus 127 ~~~~~~~~~vVv~~~---DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll 188 (247)
.. .+..-|.++.. -.++.|++-|.+.+++.+..++..|.+.--.-..+..++.|+|=|+-
T Consensus 144 l~--~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~pl~~GaDivv~ 206 (395)
T PRK08114 144 IQ--PNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFKALDFGIDISIQ 206 (395)
T ss_pred cC--CCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccccCHHHcCCcEEEE
Confidence 42 24556667754 46789999999987664312566666655555669999999996653
No 105
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=61.60 E-value=27 Score=35.06 Aligned_cols=75 Identities=17% Similarity=0.238 Sum_probs=46.6
Q ss_pred EEEEEEecChhhHhhhcccc-CCCCeEEEecCCCeeechhhhhhcccCC--CceEEE-EcCCHHHHHHHHHHhhcccCeE
Q 025857 111 VGSIIEVSTPQELQQLQPAD-GQAENIVIDLPDWQVIPAENIVASFQGS--GKTVFA-ISKTPSEAQIFLEALEQGLGGI 186 (247)
Q Consensus 111 va~~~~I~~~e~le~a~~~~-~~~~~vVv~~~DWtiIPlENlIA~~q~~--~~~lia-~v~~~~EA~val~~LE~G~DGV 186 (247)
+|+-+-+ .+++.+++..+. ..+|.++++..+=.-+=.-+.|..+... +..|++ .+.+.++|+.+. +.|+|+|
T Consensus 239 vgaavg~-~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~---~aGaD~i 314 (505)
T PLN02274 239 VGAAIGT-RESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLI---QAGVDGL 314 (505)
T ss_pred EEEEEcC-CccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHH---HcCcCEE
Confidence 4444443 345556664444 3689999998753222222455555442 356665 689999988776 5899999
Q ss_pred EEe
Q 025857 187 VLK 189 (247)
Q Consensus 187 ll~ 189 (247)
.+.
T Consensus 315 ~vg 317 (505)
T PLN02274 315 RVG 317 (505)
T ss_pred EEC
Confidence 873
No 106
>PRK00208 thiG thiazole synthase; Reviewed
Probab=61.39 E-value=32 Score=32.08 Aligned_cols=35 Identities=29% Similarity=0.355 Sum_probs=24.8
Q ss_pred CceEEEEc--CCHHHHHHHHHHhhcccCeEEEec-----CCHHHH
Q 025857 159 GKTVFAIS--KTPSEAQIFLEALEQGLGGIVLKV-----EDVKAV 196 (247)
Q Consensus 159 ~~~lia~v--~~~~EA~val~~LE~G~DGVll~~-----~d~~ev 196 (247)
+..||+.+ .+++||+.++ |.|+|||++.+ +||..+
T Consensus 175 ~vpVIveaGI~tpeda~~Am---elGAdgVlV~SAItka~dP~~m 216 (250)
T PRK00208 175 DVPVIVDAGIGTPSDAAQAM---ELGADAVLLNTAIAVAGDPVAM 216 (250)
T ss_pred CCeEEEeCCCCCHHHHHHHH---HcCCCEEEEChHhhCCCCHHHH
Confidence 34555554 6899988665 58999999865 566654
No 107
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=61.25 E-value=1.3e+02 Score=27.39 Aligned_cols=83 Identities=12% Similarity=0.073 Sum_probs=47.7
Q ss_pred CCCCeEEEEEE---e-cChhhHhhhccccC---CCCeEEEecC-C-Ceeechhhhhhccc---CCCceEEEEcCCHHHHH
Q 025857 106 SGDRRVGSIIE---V-STPQELQQLQPADG---QAENIVIDLP-D-WQVIPAENIVASFQ---GSGKTVFAISKTPSEAQ 173 (247)
Q Consensus 106 ~~g~~va~~~~---I-~~~e~le~a~~~~~---~~~~vVv~~~-D-WtiIPlENlIA~~q---~~~~~lia~v~~~~EA~ 173 (247)
..|..++.+.+ + .+++++.....++. +.+.+-++.. . -.-+|.|.+=+-.+ +...-+-..++|.++|+
T Consensus 116 ~~~~~v~~v~~a~~~p~~~~~~aa~~~lA~~~~g~~~vYlE~gs~~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~ 195 (223)
T TIGR01768 116 NPGGAAARVTKAKPIPYDKEDLAAYAAMAEEMLGMPIIYLEAGSGAPEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAR 195 (223)
T ss_pred CCCcceeecccccccCCCcHHHHHHHHHHHHHcCCcEEEEEecCCCCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHH
Confidence 33445554442 2 35555555544443 3567777733 2 34466665422211 23333445678999998
Q ss_pred HHHHHhhcccCeEEEecC
Q 025857 174 IFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 174 val~~LE~G~DGVll~~~ 191 (247)
.++ +.|+|+|++-+-
T Consensus 196 ~l~---~aGAD~VVVGs~ 210 (223)
T TIGR01768 196 EMA---EAGADTIVTGNV 210 (223)
T ss_pred HHH---HcCCCEEEECcH
Confidence 865 669999999884
No 108
>PHA00440 host protein H-NS-interacting protein
Probab=61.24 E-value=5.3 Score=32.46 Aligned_cols=55 Identities=22% Similarity=0.319 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhcccccccceeeeEEEEEEEE
Q 025857 168 TPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRV 223 (247)
Q Consensus 168 ~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~~~~~~~~~~l~L~~AtVT~V 223 (247)
|+-+.++....|-+|.||++--.---+--..+|+...+. ..+..+...||||..|
T Consensus 43 ~~~~re~lvqaLT~G~egai~F~~k~giRe~IKe~~~E~-~d~~~~k~sPATvRev 97 (98)
T PHA00440 43 NPKDKELLVQALTHGPEGAAAFAVRQGIREAIKDMHEES-TDKDLFKFSPATVREV 97 (98)
T ss_pred ChHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhHhh-ccCcceeecCceEEec
Confidence 899999999999999999973322222222344444331 2456789999999876
No 109
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=61.04 E-value=33 Score=31.96 Aligned_cols=35 Identities=29% Similarity=0.374 Sum_probs=25.0
Q ss_pred CceEEEEc--CCHHHHHHHHHHhhcccCeEEEec-----CCHHHH
Q 025857 159 GKTVFAIS--KTPSEAQIFLEALEQGLGGIVLKV-----EDVKAV 196 (247)
Q Consensus 159 ~~~lia~v--~~~~EA~val~~LE~G~DGVll~~-----~d~~ev 196 (247)
+..||+.. .+++||+.++ |.|+|||++.+ +||..+
T Consensus 175 ~vpVI~egGI~tpeda~~Am---elGAdgVlV~SAIt~a~dP~~m 216 (248)
T cd04728 175 DVPVIVDAGIGTPSDAAQAM---ELGADAVLLNTAIAKAKDPVAM 216 (248)
T ss_pred CCcEEEeCCCCCHHHHHHHH---HcCCCEEEEChHhcCCCCHHHH
Confidence 34556554 7999988665 59999999865 566654
No 110
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=60.81 E-value=18 Score=33.39 Aligned_cols=116 Identities=9% Similarity=0.086 Sum_probs=61.1
Q ss_pred chhHHHHHHHhCCcEEEecCcchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEe-cChhhHhhhccccCCCCeEE
Q 025857 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV-STPQELQQLQPADGQAENIV 137 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~~~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I-~~~e~le~a~~~~~~~~~vV 137 (247)
-++.+..|-|+|+|++++|+=-.|...++... .+..|.....++.- ++++.++.++......=|.|
T Consensus 104 ~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~-------------~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~v 170 (259)
T PF00290_consen 104 IERFFKEAKEAGVDGLIIPDLPPEESEELREA-------------AKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLV 170 (259)
T ss_dssp HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHH-------------HHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEE
T ss_pred hHHHHHHHHHcCCCEEEEcCCChHHHHHHHHH-------------HHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEee
Confidence 35688999999999999975111111111100 11122222233333 45566666665554444433
Q ss_pred E-ec-CCCe-e--echhhhhhcccCCC-ceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 138 I-DL-PDWQ-V--IPAENIVASFQGSG-KTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 138 v-~~-~DWt-i--IPlENlIA~~q~~~-~~lia--~v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
- .+ ++=+ - -.+++.|..+.+.. .-|+. .+++.++|+.+. .|+|||++-+.
T Consensus 171 s~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~----~~aDGvIVGSa 228 (259)
T PF00290_consen 171 SRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA----AGADGVIVGSA 228 (259)
T ss_dssp SSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH----TTSSEEEESHH
T ss_pred ccCCCCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH----ccCCEEEECHH
Confidence 1 11 1111 2 24677777765533 33443 358999988765 89999999765
No 111
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=60.61 E-value=39 Score=30.99 Aligned_cols=116 Identities=12% Similarity=0.109 Sum_probs=61.2
Q ss_pred chhHHHHHHHhCCcEEEecCcchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecC-hhhHhhhccccCCCCeEE
Q 025857 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST-PQELQQLQPADGQAENIV 137 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~~~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~-~e~le~a~~~~~~~~~vV 137 (247)
-.+.+..|-|+|+|++++|+=-.+..+++-.. .++.|.....++.-++ ++.++.++......=|+|
T Consensus 106 ~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~-------------~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~v 172 (258)
T PRK13111 106 VERFAADAAEAGVDGLIIPDLPPEEAEELRAA-------------AKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYV 172 (258)
T ss_pred HHHHHHHHHHcCCcEEEECCCCHHHHHHHHHH-------------HHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEE
Confidence 46789999999999999974112222221100 0112222222222233 445555555443322322
Q ss_pred E--ecCCCe-e--echhhhhhcccCC-CceEE--EEcCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 138 I--DLPDWQ-V--IPAENIVASFQGS-GKTVF--AISKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 138 v--~~~DWt-i--IPlENlIA~~q~~-~~~li--a~v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
= -.++.+ - -++++.+..+.+. +..++ ..+++.++++.++ + ++|||++-+.
T Consensus 173 s~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~---~-~ADGviVGSa 230 (258)
T PRK13111 173 SRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIA---A-VADGVIVGSA 230 (258)
T ss_pred eCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHH---H-hCCEEEEcHH
Confidence 0 113432 2 2466677766542 33344 3457889888866 3 4999999874
No 112
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=60.56 E-value=14 Score=31.49 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhcccCeEEEecCCHH-------------HHHHHHHhhcccccccceeee
Q 025857 169 PSEAQIFLEALEQGLGGIVLKVEDVK-------------AVLALKEYFDGRNEVSNLLSL 215 (247)
Q Consensus 169 ~~EA~val~~LE~G~DGVll~~~d~~-------------ev~~l~~~~~~~~~~~~~l~L 215 (247)
--++.-+|.+|.+|+|||++.-=..+ -+.-|++.+.+...+.++++.
T Consensus 40 rvn~~fvl~Al~~GaDGV~v~GC~~geCHy~~GN~ka~rR~~~lke~l~elgie~eRv~~ 99 (132)
T COG1908 40 RVNPEFVLKALRKGADGVLVAGCKIGECHYISGNYKAKRRMELLKELLKELGIEPERVRV 99 (132)
T ss_pred ccCHHHHHHHHHcCCCeEEEecccccceeeeccchHHHHHHHHHHHHHHHhCCCcceEEE
Confidence 34678899999999999999653322 244567777766656666554
No 113
>PLN02623 pyruvate kinase
Probab=60.12 E-value=14 Score=38.02 Aligned_cols=61 Identities=10% Similarity=0.116 Sum_probs=50.4
Q ss_pred CCCeEEEecC-CC-eeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 025857 132 QAENIVIDLP-DW-QVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (247)
Q Consensus 132 ~~~~vVv~~~-DW-tiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ 194 (247)
..||+-+.|- +- -|..+-++++.. +.+..|++-+.+.+--+-.-++++ |+|||++.+.|.+
T Consensus 291 ~vD~ialSFVr~a~DV~~~r~~l~~~-~~~~~iiakIEt~eaVeNldeIl~-g~DgImIgrgDLg 353 (581)
T PLN02623 291 KVDFYAVSFVKDAQVVHELKDYLKSC-NADIHVIVKIESADSIPNLHSIIT-ASDGAMVARGDLG 353 (581)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHc-CCcceEEEEECCHHHHHhHHHHHH-hCCEEEECcchhh
Confidence 5788888873 33 477788888874 456789999999999999999999 9999999999843
No 114
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=59.77 E-value=71 Score=27.61 Aligned_cols=118 Identities=15% Similarity=0.080 Sum_probs=68.5
Q ss_pred chhHHHHHHHhCCcEEEecCc---chHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCe
Q 025857 59 SKQVMTAAVERGWNTFVFLSE---NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~~~---~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~ 135 (247)
-.+++.++++.|++.+=++.. ..+..+...++ .|+ ..++ ...+...++.+.+... .+++
T Consensus 26 ~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~---~~~------------~~~g-~gtvl~~d~~~~A~~~--gAdg 87 (187)
T PRK07455 26 GLQMAEAVAAGGMRLIEITWNSDQPAELISQLREK---LPE------------CIIG-TGTILTLEDLEEAIAA--GAQF 87 (187)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHh---CCC------------cEEe-EEEEEcHHHHHHHHHc--CCCE
Confidence 367889999999998777521 12222222111 120 0111 1223334666666543 5788
Q ss_pred EEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC----HHHHHHHHHhh
Q 025857 136 IVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED----VKAVLALKEYF 203 (247)
Q Consensus 136 vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d----~~ev~~l~~~~ 203 (247)
+++-..|-.++|.-+... . ..++. +.|++|+..+. +.|+|=|-+-|.+ ++-+++++..+
T Consensus 88 v~~p~~~~~~~~~~~~~~----~-~~i~G-~~t~~e~~~A~---~~Gadyv~~Fpt~~~~G~~~l~~~~~~~ 150 (187)
T PRK07455 88 CFTPHVDPELIEAAVAQD----I-PIIPG-ALTPTEIVTAW---QAGASCVKVFPVQAVGGADYIKSLQGPL 150 (187)
T ss_pred EECCCCCHHHHHHHHHcC----C-CEEcC-cCCHHHHHHHH---HCCCCEEEECcCCcccCHHHHHHHHhhC
Confidence 877777877777544322 1 24555 89999986665 5899999776664 45555555543
No 115
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=59.57 E-value=65 Score=25.97 Aligned_cols=68 Identities=12% Similarity=0.083 Sum_probs=40.3
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~--~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
..+.++++..-...-.++ ++..++. ....++... ...+.......++.|++|++.+|-++.++.+...
T Consensus 44 ~~d~illd~~~~~~~g~~-~~~~l~~~~~~~pii~ls-~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~ 113 (222)
T PRK10643 44 HYSLVVLDLGLPDEDGLH-LLRRWRQKKYTLPVLILT-ARDTLEDRVAGLDVGADDYLVKPFALEELHARIR 113 (222)
T ss_pred CCCEEEEECCCCCCCHHH-HHHHHHhcCCCCcEEEEE-CCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHH
Confidence 356777664433322222 3333332 233444443 3344556678899999999999999987765433
No 116
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=59.42 E-value=27 Score=32.24 Aligned_cols=42 Identities=17% Similarity=0.077 Sum_probs=34.6
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 025857 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (247)
Q Consensus 160 ~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~~ 204 (247)
.+|...+.|.+||..++ +.|+|.|.|.+=+|.+++++.+.+.
T Consensus 184 ~~IgVev~t~eea~~A~---~~gaD~I~ld~~~p~~l~~~~~~~~ 225 (272)
T cd01573 184 KKIVVEVDSLEEALAAA---EAGADILQLDKFSPEELAELVPKLR 225 (272)
T ss_pred CeEEEEcCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHHh
Confidence 36888899999988764 7999999999999998877776553
No 117
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=59.20 E-value=86 Score=25.12 Aligned_cols=70 Identities=16% Similarity=0.208 Sum_probs=42.1
Q ss_pred CCCeEEEecCCCeeechhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~~--~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~ 203 (247)
..+-++++......-.+ +++..++.. ...++... +..+.......++.|+++++.+|.+++++.+..+.+
T Consensus 45 ~~dlvi~d~~~~~~~g~-~~~~~l~~~~~~~~ii~ls-~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~ 116 (204)
T PRK09958 45 KPDIVIIDVDIPGVNGI-QVLETLRKRQYSGIIIIVS-AKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAA 116 (204)
T ss_pred CCCEEEEeCCCCCCCHH-HHHHHHHhhCCCCeEEEEe-CCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHH
Confidence 45666666544333222 344444432 23444443 344455667889999999999999998776555444
No 118
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=58.98 E-value=50 Score=29.54 Aligned_cols=113 Identities=8% Similarity=0.063 Sum_probs=59.9
Q ss_pred hhHHHHHHHhCCcEEEecCcchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEec-ChhhHhhhccccCCCCeEEE
Q 025857 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENIVI 138 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~-~~e~le~a~~~~~~~~~vVv 138 (247)
.+.+..+.++|++++++++.+.|...++-+ ..+..|...+.++.-. +.+.++.+... ..+++.+
T Consensus 94 ~~fi~~~~~aG~~giiipDl~~ee~~~~~~-------------~~~~~g~~~i~~i~P~T~~~~i~~i~~~--~~~~vy~ 158 (242)
T cd04724 94 ERFLRDAKEAGVDGLIIPDLPPEEAEEFRE-------------AAKEYGLDLIFLVAPTTPDERIKKIAEL--ASGFIYY 158 (242)
T ss_pred HHHHHHHHHCCCcEEEECCCCHHHHHHHHH-------------HHHHcCCcEEEEeCCCCCHHHHHHHHhh--CCCCEEE
Confidence 678999999999999997544432222111 1123343434444333 34445555432 2344333
Q ss_pred ec----CC-Ce--eechhhhhhcccCC-CceE--EEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 139 DL----PD-WQ--VIPAENIVASFQGS-GKTV--FAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 139 ~~----~D-Wt--iIPlENlIA~~q~~-~~~l--ia~v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
-. .+ .+ .-+..+.|..+.+. +..| =..+++.++++. +.+. +||+++-+.
T Consensus 159 ~s~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~---~~~~-ADgvVvGSa 217 (242)
T cd04724 159 VSRTGVTGARTELPDDLKELIKRIRKYTDLPIAVGFGISTPEQAAE---VAKY-ADGVIVGSA 217 (242)
T ss_pred EeCCCCCCCccCCChhHHHHHHHHHhcCCCcEEEEccCCCHHHHHH---HHcc-CCEEEECHH
Confidence 21 12 12 23355666666543 2222 233567777765 5677 999999763
No 119
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=58.76 E-value=20 Score=32.02 Aligned_cols=45 Identities=20% Similarity=0.362 Sum_probs=32.9
Q ss_pred hhhhhhcccCCCceEEEE-----cCCHHHHHHHHHHhhcccCeEEEecCCHHHHH
Q 025857 148 AENIVASFQGSGKTVFAI-----SKTPSEAQIFLEALEQGLGGIVLKVEDVKAVL 197 (247)
Q Consensus 148 lENlIA~~q~~~~~lia~-----v~~~~EA~val~~LE~G~DGVll~~~d~~ev~ 197 (247)
-+.+|..++..+-.++.- +++.++++.++ +.|+|||+ ||.|+.+.
T Consensus 212 ~~~~v~~~~~~Gl~v~~wT~~~~~n~~~~~~~l~---~~Gvdgii--TD~p~~~~ 261 (265)
T cd08564 212 TEEFVKKAHENGLKVMTYFDEPVNDNEEDYKVYL---ELGVDCIC--PNDPVLLV 261 (265)
T ss_pred hHHHHHHHHHcCCEEEEecCCCCCCCHHHHHHHH---HcCCCEEE--cCCHHHHH
Confidence 367788888888777776 46677777654 78999976 77777443
No 120
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=57.87 E-value=1.4e+02 Score=26.68 Aligned_cols=128 Identities=13% Similarity=0.054 Sum_probs=61.2
Q ss_pred CchhHHHHHHHhCCcEEEecC---cchHHHhhccc----eeEEeeeeecCCceecCCCCeEEEEE--EecChhhHhhhcc
Q 025857 58 ESKQVMTAAVERGWNTFVFLS---ENQQLAIDWST----IALLDPLFIKEGEVYDSGDRRVGSII--EVSTPQELQQLQP 128 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~---~~~e~~~~lg~----i~~i~pl~i~~g~~~~~~g~~va~~~--~I~~~e~le~a~~ 128 (247)
.+.+-+..+++.|++.+++.+ ++.+..+++.+ =+++--+-+.+|.+......++.+.. +-.+.+.++.+..
T Consensus 84 ~s~~d~~~~~~~Ga~~vivgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~ 163 (254)
T TIGR00735 84 KSIEDVDKLLRAGADKVSINTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKE 163 (254)
T ss_pred CCHHHHHHHHHcCCCEEEEChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHH
Confidence 578899999999999999864 34555555432 12221122223321100000222211 1112222233322
Q ss_pred c-cCCCCeEEEecCCC----eeec---hhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcc-cCeEEEecC
Q 025857 129 A-DGQAENIVIDLPDW----QVIP---AENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQG-LGGIVLKVE 191 (247)
Q Consensus 129 ~-~~~~~~vVv~~~DW----tiIP---lENlIA~~q~~~~~lia~--v~~~~EA~val~~LE~G-~DGVll~~~ 191 (247)
+ ...++.+++...+= +-.. +..+.. ..+..+++. ++++++++ ++++.| +|||++.+-
T Consensus 164 l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~---~~~ipvia~GGi~s~~di~---~~~~~g~~dgv~~g~a 231 (254)
T TIGR00735 164 VEKLGAGEILLTSMDKDGTKSGYDLELTKAVSE---AVKIPVIASGGAGKPEHFY---EAFTKGKADAALAASV 231 (254)
T ss_pred HHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHH---hCCCCEEEeCCCCCHHHHH---HHHHcCCcceeeEhHH
Confidence 2 23467777743211 0111 223332 233455544 57888877 455657 999988443
No 121
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=57.79 E-value=24 Score=34.84 Aligned_cols=75 Identities=12% Similarity=0.155 Sum_probs=49.6
Q ss_pred EEEEEEecChhhHhhhcccc-CCCCeEEEecCCCeeechhhhhhcccCC--CceE-EEEcCCHHHHHHHHHHhhcccCeE
Q 025857 111 VGSIIEVSTPQELQQLQPAD-GQAENIVIDLPDWQVIPAENIVASFQGS--GKTV-FAISKTPSEAQIFLEALEQGLGGI 186 (247)
Q Consensus 111 va~~~~I~~~e~le~a~~~~-~~~~~vVv~~~DWtiIPlENlIA~~q~~--~~~l-ia~v~~~~EA~val~~LE~G~DGV 186 (247)
+++-+-+ ++++++++..+. ..+|.++|+..+-.-..+.++|..+... +..| .+.+.+.++|+.+.. .|+|+|
T Consensus 144 v~aavg~-~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~---aGaD~I 219 (404)
T PRK06843 144 VGAAVSI-DIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLIS---VGADCL 219 (404)
T ss_pred EEEEEeC-CHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHH---cCCCEE
Confidence 4444433 345556664433 3699999999876666677777776543 2344 447889888887664 699999
Q ss_pred EEe
Q 025857 187 VLK 189 (247)
Q Consensus 187 ll~ 189 (247)
.+-
T Consensus 220 ~vG 222 (404)
T PRK06843 220 KVG 222 (404)
T ss_pred EEC
Confidence 764
No 122
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=57.73 E-value=10 Score=35.48 Aligned_cols=39 Identities=31% Similarity=0.296 Sum_probs=27.0
Q ss_pred hhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 025857 148 AENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 148 lENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
|+.||+++ +-..-+=|...++++| ..+||.|+|+||+.+
T Consensus 174 l~iiie~a-~VPviVDAGiG~pSdA---a~aMElG~DaVL~NT 212 (262)
T COG2022 174 LEIIIEEA-DVPVIVDAGIGTPSDA---AQAMELGADAVLLNT 212 (262)
T ss_pred HHHHHHhC-CCCEEEeCCCCChhHH---HHHHhcccceeehhh
Confidence 56677765 3333333555788886 467899999999986
No 123
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=57.30 E-value=87 Score=27.17 Aligned_cols=27 Identities=15% Similarity=0.254 Sum_probs=21.6
Q ss_pred EEEeCchhHHHHHHHhCCcEEEecCcc
Q 025857 54 WIWTESKQVMTAAVERGWNTFVFLSEN 80 (247)
Q Consensus 54 WiW~~~KevvT~ALEsG~d~~v~~~~~ 80 (247)
|+=..+.+++..|..+|+|.+++.=||
T Consensus 5 ~vp~~~~~~~~~a~~~g~D~vilDlEd 31 (221)
T PF03328_consen 5 FVPANSPKMLEKAAASGADFVILDLED 31 (221)
T ss_dssp EEESTSHHHHHHHHTTCSSEEEEESST
T ss_pred EEeCCCHHHHHHHHhcCCCEEEEeCcc
Confidence 344478999999999999999986444
No 124
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=57.24 E-value=1.1e+02 Score=27.33 Aligned_cols=122 Identities=7% Similarity=0.030 Sum_probs=61.6
Q ss_pred CchhHHHHHHHhCCcEEEecC---cchHHHhhccce---eEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccC
Q 025857 58 ESKQVMTAAVERGWNTFVFLS---ENQQLAIDWSTI---ALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG 131 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~---~~~e~~~~lg~i---~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~ 131 (247)
++-+-+...++.|++.+++.+ ++.+..+++..- .++--+-..++.++. +| +.+-++-+-++.+.....
T Consensus 86 rs~e~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~-~g-----w~~~~~~~~~~~~~~~~~ 159 (234)
T PRK13587 86 RTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKV-NG-----WEEDTELNLFSFVRQLSD 159 (234)
T ss_pred CCHHHHHHHHHCCCCEEEECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEe-cC-----CcccCCCCHHHHHHHHHH
Confidence 688999999999999999865 345566655322 111112222332221 01 001111111222222111
Q ss_pred -CCCeEEEecCCC--e----eec-hhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 132 -QAENIVIDLPDW--Q----VIP-AENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 132 -~~~~vVv~~~DW--t----iIP-lENlIA~~q~~~~~lia~--v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
.+..+|+..-+= + ..+ ++.+.+. .+..+++. +++.++.+.++ +.|++||++-+-
T Consensus 160 ~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~---~~ipvi~~GGi~s~edi~~l~---~~G~~~vivG~a 223 (234)
T PRK13587 160 IPLGGIIYTDIAKDGKMSGPNFELTGQLVKA---TTIPVIASGGIRHQQDIQRLA---SLNVHAAIIGKA 223 (234)
T ss_pred cCCCEEEEecccCcCCCCccCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHH---HcCCCEEEEhHH
Confidence 234445443211 1 122 3344332 23345544 68999999876 469999998653
No 125
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=57.11 E-value=49 Score=26.85 Aligned_cols=68 Identities=13% Similarity=0.143 Sum_probs=39.5
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~-~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
..+.++++..-+..-.++ ++..++. ....++... +..+......+++.|+++++.+|-++.++.+...
T Consensus 44 ~~dlvi~d~~~~~~~g~~-~~~~l~~~~~~~ii~ls-~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~ 112 (223)
T PRK11517 44 DYALIILDIMLPGMDGWQ-ILQTLRTAKQTPVICLT-ARDSVDDRVRGLDSGANDYLVKPFSFSELLARVR 112 (223)
T ss_pred CCCEEEEECCCCCCCHHH-HHHHHHcCCCCCEEEEE-CCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHH
Confidence 467777764432221221 2222221 133455444 3344556778999999999999999887755433
No 126
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=56.83 E-value=80 Score=32.07 Aligned_cols=102 Identities=12% Similarity=0.019 Sum_probs=65.7
Q ss_pred hhHHHHHHHhCCcEEEecCcchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeEEEe
Q 025857 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vVv~ 139 (247)
+.+...-.+.|.+.++++. |.+.++++.+ .| ...++.+.++++-++.+-.. +++.+|+.
T Consensus 413 ~~va~~L~~~g~~vvvID~-d~~~v~~~~~-----------------~g-~~v~~GDat~~~~L~~agi~--~A~~vv~~ 471 (601)
T PRK03659 413 QVIGRLLMANKMRITVLER-DISAVNLMRK-----------------YG-YKVYYGDATQLELLRAAGAE--KAEAIVIT 471 (601)
T ss_pred HHHHHHHHhCCCCEEEEEC-CHHHHHHHHh-----------------CC-CeEEEeeCCCHHHHHhcCCc--cCCEEEEE
Confidence 3444444467888777763 3555554432 12 12477788888887776432 57788888
Q ss_pred cCCCeeechhhhhh----cccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 025857 140 LPDWQVIPAENIVA----SFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (247)
Q Consensus 140 ~~DWtiIPlENlIA----~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~ 189 (247)
..|. -+|+.. +-...+.+|++.++|.++++... +.|+|-|+-.
T Consensus 472 ~~d~----~~n~~i~~~~r~~~p~~~IiaRa~~~~~~~~L~---~~Ga~~vv~e 518 (601)
T PRK03659 472 CNEP----EDTMKIVELCQQHFPHLHILARARGRVEAHELL---QAGVTQFSRE 518 (601)
T ss_pred eCCH----HHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHH---hCCCCEEEcc
Confidence 7775 345332 22345679999999999998765 4699988633
No 127
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=56.79 E-value=69 Score=27.90 Aligned_cols=125 Identities=18% Similarity=0.178 Sum_probs=59.7
Q ss_pred CchhHHHHHHHhCCcEEEecCc---chHHHhhccce----eEEeeeeecCCceecCCCCeEEEEEEe-cChhhHhhhccc
Q 025857 58 ESKQVMTAAVERGWNTFVFLSE---NQQLAIDWSTI----ALLDPLFIKEGEVYDSGDRRVGSIIEV-STPQELQQLQPA 129 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~~---~~e~~~~lg~i----~~i~pl~i~~g~~~~~~g~~va~~~~I-~~~e~le~a~~~ 129 (247)
.+-+-+..+++.|++.+++.+. +.+.++++.+. .++-.+-+.++...- +|.. -.. .+..++.....
T Consensus 86 ~~~~~~~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~-~g~~----~~~~~~~~~~~~~~~- 159 (241)
T PRK13585 86 RSAEDAASLLDLGVDRVILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVI-KGWT----EKTGYTPVEAAKRFE- 159 (241)
T ss_pred CCHHHHHHHHHcCCCEEEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEE-CCCc----ccCCCCHHHHHHHHH-
Confidence 4567789999999999998652 23344444322 122122222332220 1100 000 02222222221
Q ss_pred cCCCCeEEEecC--C--CeeechhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 130 DGQAENIVIDLP--D--WQVIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 130 ~~~~~~vVv~~~--D--WtiIPlENlIA~~q~~~~~lia--~v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
...++.+++... | .+-+.++.+-+-.+..+..+++ .+++.++++.+ ++.|++||++.+-
T Consensus 160 ~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~~iPvia~GGI~~~~di~~~---~~~Ga~gv~vgsa 224 (241)
T PRK13585 160 ELGAGSILFTNVDVEGLLEGVNTEPVKELVDSVDIPVIASGGVTTLDDLRAL---KEAGAAGVVVGSA 224 (241)
T ss_pred HcCCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHH---HHcCCCEEEEEHH
Confidence 234566666533 2 1222232221111122233444 46899998863 6679999998653
No 128
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=56.67 E-value=14 Score=32.26 Aligned_cols=30 Identities=23% Similarity=0.469 Sum_probs=25.5
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEec
Q 025857 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (247)
Q Consensus 48 ~~~K~vWiW~-~~KevvT~ALEsG~d~~v~~ 77 (247)
++...+|+|| .+++.+..+++.|+|+|+..
T Consensus 202 ~~gl~v~~wTvn~~~~~~~l~~~gvdgiiTD 232 (234)
T cd08570 202 KNGKKVFVWTVNTEEDMRYAIRLGVDGVITD 232 (234)
T ss_pred HCCCEEEEEecCCHHHHHHHHHCCCCEEEeC
Confidence 4567899999 46899999999999999853
No 129
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=56.67 E-value=17 Score=32.53 Aligned_cols=36 Identities=11% Similarity=0.137 Sum_probs=28.1
Q ss_pred CCCcEEEEEe-----CchhHHHHHHHhCCcEEEecCcchHHHh
Q 025857 48 SKPKRVWIWT-----ESKQVMTAAVERGWNTFVFLSENQQLAI 85 (247)
Q Consensus 48 ~~~K~vWiW~-----~~KevvT~ALEsG~d~~v~~~~~~e~~~ 85 (247)
.+.+.||+|+ .+.+.+...++.|+|+|+.. +.+++.
T Consensus 221 ~~Gl~v~~wT~~~~~n~~~~~~~l~~~GvdgiiTD--~p~~~~ 261 (265)
T cd08564 221 ENGLKVMTYFDEPVNDNEEDYKVYLELGVDCICPN--DPVLLV 261 (265)
T ss_pred HcCCEEEEecCCCCCCCHHHHHHHHHcCCCEEEcC--CHHHHH
Confidence 4577899997 56899999999999998864 244444
No 130
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=56.18 E-value=1.1e+02 Score=26.35 Aligned_cols=104 Identities=17% Similarity=0.173 Sum_probs=52.0
Q ss_pred eeecCCceecC-CCCeEEEEEEecChhhHhhhccccCCCCeEEE-ecCCC-eee--chhhhhhcccCCCceEE--EEcCC
Q 025857 96 LFIKEGEVYDS-GDRRVGSIIEVSTPQELQQLQPADGQAENIVI-DLPDW-QVI--PAENIVASFQGSGKTVF--AISKT 168 (247)
Q Consensus 96 l~i~~g~~~~~-~g~~va~~~~I~~~e~le~a~~~~~~~~~vVv-~~~DW-tiI--PlENlIA~~q~~~~~li--a~v~~ 168 (247)
+.+.+|..++. +|.+-.+.....+|.++-...... .++.+.+ +-..- +-. .++.+-.-.+.....+. ..+++
T Consensus 5 id~~~g~~v~~~~G~~~~~~~~~~dp~~~a~~~~~~-g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~~~~pi~~ggGI~~ 83 (230)
T TIGR00007 5 IDIKDGKCVRLYQGDYDKETVYGDDPVEAAKKWEEE-GAERIHVVDLDGAKEGGPVNLPVIKKIVRETGVPVQVGGGIRS 83 (230)
T ss_pred EEeeCCEEEEeeccccCcceEecCCHHHHHHHHHHc-CCCEEEEEeCCccccCCCCcHHHHHHHHHhcCCCEEEeCCcCC
Confidence 34456666542 233222333334666655554333 3444444 33222 122 23322221122222233 46689
Q ss_pred HHHHHHHHHHhhcccCeEEEec---CCHHHHHHHHHhh
Q 025857 169 PSEAQIFLEALEQGLGGIVLKV---EDVKAVLALKEYF 203 (247)
Q Consensus 169 ~~EA~val~~LE~G~DGVll~~---~d~~ev~~l~~~~ 203 (247)
.++++.+++ .|+|.|++.+ +|++.+.++.+.+
T Consensus 84 ~ed~~~~~~---~Ga~~vvlgs~~l~d~~~~~~~~~~~ 118 (230)
T TIGR00007 84 LEDVEKLLD---LGVDRVIIGTAAVENPDLVKELLKEY 118 (230)
T ss_pred HHHHHHHHH---cCCCEEEEChHHhhCHHHHHHHHHHh
Confidence 999887766 7999999985 4555555554443
No 131
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=55.63 E-value=41 Score=31.32 Aligned_cols=41 Identities=7% Similarity=0.070 Sum_probs=34.3
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 025857 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (247)
Q Consensus 160 ~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~ 203 (247)
..|-..++|.+||+.+. +.|+|-|.|++=.+++++++.+.+
T Consensus 189 ~~Igvsv~tleea~~A~---~~gaDyI~lD~~~~e~l~~~~~~~ 229 (277)
T PRK08072 189 VKIEVETETEEQVREAV---AAGADIIMFDNRTPDEIREFVKLV 229 (277)
T ss_pred CEEEEEeCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHhc
Confidence 46778899999988774 799999999888888888877754
No 132
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=55.55 E-value=66 Score=32.57 Aligned_cols=132 Identities=20% Similarity=0.300 Sum_probs=84.4
Q ss_pred CchhHHHHHHHhCCcEEEe--c--CcchHHHhhccceeEEeeeeecCCceecCC-CCeEEEEEEecChhhHhhhccccCC
Q 025857 58 ESKQVMTAAVERGWNTFVF--L--SENQQLAIDWSTIALLDPLFIKEGEVYDSG-DRRVGSIIEVSTPQELQQLQPADGQ 132 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~--~--~~~~e~~~~lg~i~~i~pl~i~~g~~~~~~-g~~va~~~~I~~~e~le~a~~~~~~ 132 (247)
.||+-+..++|-|+|.+=. . ++|.+.+++ + +... |..+.++.+|..++.++.+.+-...
T Consensus 176 KD~~dl~f~~~~gvD~vA~SFVr~~~Dv~~~R~---~-------------l~~~~~~~~~iiaKIE~~eav~NldeIi~~ 239 (477)
T COG0469 176 KDKEDLKFGLEQGVDFVALSFVRNAEDVEEVRE---I-------------LAETGGRDVKIIAKIENQEAVDNLDEIIEA 239 (477)
T ss_pred cCHHHHHHHHhcCCCEEEEecCCCHHHHHHHHH---H-------------HHHhCCCCceEEEeecCHHHHhHHHHHHHh
Confidence 4799999999999997542 2 244444442 1 1112 2236688889999988888766667
Q ss_pred CCeEEEecCCCee-echhhhhh-------cccCCCceEEEEc-----------CCHHHHHHHHHHhhcccCeEEEecCC-
Q 025857 133 AENIVIDLPDWQV-IPAENIVA-------SFQGSGKTVFAIS-----------KTPSEAQIFLEALEQGLGGIVLKVED- 192 (247)
Q Consensus 133 ~~~vVv~~~DWti-IPlENlIA-------~~q~~~~~lia~v-----------~~~~EA~val~~LE~G~DGVll~~~d- 192 (247)
.|-+.|--.|=-+ ||+|++.. .....+--+|..- .+-.|+--.+.+---|+|+|+|.-+.
T Consensus 240 SDGIMVARGDLGVEip~e~Vp~~QK~iI~~~~~~gkpVItATQMLeSMi~np~PTRAEvsDVanAvlDGtDAvMLS~ETA 319 (477)
T COG0469 240 SDGIMVARGDLGVEIPLEEVPIIQKRIIRKARRAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETA 319 (477)
T ss_pred cCceEEEecccccccCHHHhhHHHHHHHHHHHHcCCceEEeeccHHHHhhCCCCCchhhhHHHHHHHhCCceeeechhhh
Confidence 7877776666554 78887643 2223232233221 24456666777777899999999876
Q ss_pred -----HHHHHHHHHhhcc
Q 025857 193 -----VKAVLALKEYFDG 205 (247)
Q Consensus 193 -----~~ev~~l~~~~~~ 205 (247)
.+.|+-+.+++..
T Consensus 320 ~G~yPveaV~~M~~I~~~ 337 (477)
T COG0469 320 AGKYPVEAVATMARIAKE 337 (477)
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 5666666666543
No 133
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=55.54 E-value=1e+02 Score=24.41 Aligned_cols=16 Identities=19% Similarity=0.098 Sum_probs=13.1
Q ss_pred HHHHHhCCcEEEecCc
Q 025857 64 TAAVERGWNTFVFLSE 79 (247)
Q Consensus 64 T~ALEsG~d~~v~~~~ 79 (247)
..+.+.|+|.+.+...
T Consensus 78 ~~~~~~g~d~v~l~~~ 93 (200)
T cd04722 78 AAARAAGADGVEIHGA 93 (200)
T ss_pred HHHHHcCCCEEEEecc
Confidence 4889999999988643
No 134
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=55.24 E-value=1.1e+02 Score=26.24 Aligned_cols=104 Identities=14% Similarity=0.137 Sum_probs=52.8
Q ss_pred eeeecCCceecCC-CCeEEEEEEecChhhHhhhccccCCCCeEEEecCC-C-e--eechhhhhhccc---CCCceEEEEc
Q 025857 95 PLFIKEGEVYDSG-DRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPD-W-Q--VIPAENIVASFQ---GSGKTVFAIS 166 (247)
Q Consensus 95 pl~i~~g~~~~~~-g~~va~~~~I~~~e~le~a~~~~~~~~~vVv~~~D-W-t--iIPlENlIA~~q---~~~~~lia~v 166 (247)
.+.+.+|..++.. |.+--......++.++-..... ..++.+.|...+ + + -.-.+ +++++. +-+.-+-..+
T Consensus 5 ~idl~~g~~v~~~~G~~~~~~~~~~dp~~~a~~~~~-~g~d~l~v~dl~~~~~~~~~~~~-~i~~i~~~~~~pv~~~GgI 82 (234)
T cd04732 5 AIDLKDGKCVRLYQGDYDKKTVYSDDPVEVAKKWEE-AGAKWLHVVDLDGAKGGEPVNLE-LIEEIVKAVGIPVQVGGGI 82 (234)
T ss_pred EEEeECCEEEEeecccCCCCeEECCCHHHHHHHHHH-cCCCEEEEECCCccccCCCCCHH-HHHHHHHhcCCCEEEeCCc
Confidence 3556677766543 2221223445566655555433 245655555322 1 0 00111 222221 2233344467
Q ss_pred CCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 025857 167 KTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (247)
Q Consensus 167 ~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~ 203 (247)
+++++|+.+++ .|+|.|++.+.-..+...++++.
T Consensus 83 ~~~e~~~~~~~---~Gad~vvigs~~l~dp~~~~~i~ 116 (234)
T cd04732 83 RSLEDIERLLD---LGVSRVIIGTAAVKNPELVKELL 116 (234)
T ss_pred CCHHHHHHHHH---cCCCEEEECchHHhChHHHHHHH
Confidence 89888887774 79999999886444333333333
No 135
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=55.02 E-value=42 Score=27.32 Aligned_cols=20 Identities=10% Similarity=0.119 Sum_probs=16.9
Q ss_pred CchhHHHHHHHhCCcEEEec
Q 025857 58 ESKQVMTAAVERGWNTFVFL 77 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~ 77 (247)
+..+.+..|.+.|+|++++.
T Consensus 66 ~~~~~a~~a~~~Gad~i~v~ 85 (201)
T cd00945 66 VKVAEVEEAIDLGADEIDVV 85 (201)
T ss_pred HHHHHHHHHHHcCCCEEEEe
Confidence 46788899999999998863
No 136
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=54.71 E-value=90 Score=25.14 Aligned_cols=68 Identities=16% Similarity=0.160 Sum_probs=39.8
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~--~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
..+.++++..-...-.+ .++..++. ....++... ...+......+++.|+++++.+|-++.++....+
T Consensus 44 ~~dlvild~~l~~~~g~-~~~~~i~~~~~~~~ii~lt-~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~ 113 (219)
T PRK10336 44 PYDAVILDLTLPGMDGR-DILREWREKGQREPVLILT-ARDALAERVEGLRLGADDYLCKPFALIEVAARLE 113 (219)
T ss_pred CCCEEEEECCCCCCCHH-HHHHHHHhcCCCCcEEEEE-CCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHH
Confidence 45777776543222112 22222222 234455544 3444555678889999999999999887754443
No 137
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=54.50 E-value=96 Score=26.74 Aligned_cols=102 Identities=12% Similarity=0.073 Sum_probs=51.4
Q ss_pred eeecCCceecC-CCCeEEEEEEecChhhHhhhccccCCCCeEEEecCCC------eeec-hhhhhhcccCCCceEEEEcC
Q 025857 96 LFIKEGEVYDS-GDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDW------QVIP-AENIVASFQGSGKTVFAISK 167 (247)
Q Consensus 96 l~i~~g~~~~~-~g~~va~~~~I~~~e~le~a~~~~~~~~~vVv~~~DW------tiIP-lENlIA~~q~~~~~lia~v~ 167 (247)
+.+.+|..++. +|.+--......++.++-...... .++.+.+...|= ..++ ++.+.... .-+..+-..++
T Consensus 7 iD~~~g~~v~~~~G~~~~~~~~~~~~~~~a~~~~~~-g~~~i~v~dld~~~~g~~~~~~~i~~i~~~~-~~pv~~~GGI~ 84 (233)
T PRK00748 7 IDLKDGKCVRLYQGDYDQATVYSDDPVAQAKAWEDQ-GAKWLHLVDLDGAKAGKPVNLELIEAIVKAV-DIPVQVGGGIR 84 (233)
T ss_pred EEEECCeEEEccccccccceEecCCHHHHHHHHHHc-CCCEEEEEeCCccccCCcccHHHHHHHHHHC-CCCEEEcCCcC
Confidence 55567766642 222212222234665544443332 345544443221 1222 22222221 22223334678
Q ss_pred CHHHHHHHHHHhhcccCeEEEecC---CHHHHHHHHHh
Q 025857 168 TPSEAQIFLEALEQGLGGIVLKVE---DVKAVLALKEY 202 (247)
Q Consensus 168 ~~~EA~val~~LE~G~DGVll~~~---d~~ev~~l~~~ 202 (247)
+.++++.++. .|+|+|++.+. +++.+.++.+.
T Consensus 85 ~~ed~~~~~~---~Ga~~vilg~~~l~~~~~l~ei~~~ 119 (233)
T PRK00748 85 SLETVEALLD---AGVSRVIIGTAAVKNPELVKEACKK 119 (233)
T ss_pred CHHHHHHHHH---cCCCEEEECchHHhCHHHHHHHHHH
Confidence 9999987766 59999999985 45555555443
No 138
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=54.39 E-value=11 Score=36.56 Aligned_cols=39 Identities=28% Similarity=0.324 Sum_probs=29.9
Q ss_pred EEcCCHHHHHH-HHHHhhcccCeEEEecCCHHHHHHHHHh
Q 025857 164 AISKTPSEAQI-FLEALEQGLGGIVLKVEDVKAVLALKEY 202 (247)
Q Consensus 164 a~v~~~~EA~v-al~~LE~G~DGVll~~~d~~ev~~l~~~ 202 (247)
+.-.+-+|.+. .-.+||.|+|+||..|.|.+.+++|..+
T Consensus 9 a~~~~WeekK~~it~alEaG~d~vvv~~~dvervkeLGni 48 (376)
T COG1465 9 AEDESWEEKKKRITAALEAGVDVVVVRPADVERVKELGNI 48 (376)
T ss_pred cCCcchhHhhHHHHHHHhcCCCEEEECHHHHHHHHhhCce
Confidence 33346677744 4568999999999999999988877653
No 139
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=54.35 E-value=22 Score=31.24 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=28.6
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEecCcchHHHh
Q 025857 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSENQQLAI 85 (247)
Q Consensus 48 ~~~K~vWiW~-~~KevvT~ALEsG~d~~v~~~~~~e~~~ 85 (247)
+..+.+++|+ .+.+.+..+++.|+|+|+... .++..
T Consensus 210 ~~G~~v~vWTVN~~~~~~~l~~~gVdgIiTD~--p~~~~ 246 (249)
T cd08561 210 AAGLEVHVWTVNDPAEMRRLLDLGVDGIITDR--PDLLL 246 (249)
T ss_pred HCCCEEEEEecCCHHHHHHHHhcCCCEEEcCC--HHHHH
Confidence 3578899999 679999999999999988742 44443
No 140
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=54.26 E-value=16 Score=35.41 Aligned_cols=68 Identities=12% Similarity=0.083 Sum_probs=42.2
Q ss_pred ChhhHhhhccccCC---CCeEEEecCCCeeechhhhhhcccC--CCceEEEE-cCCHHHHHHHHHHhhcccCeEEEe
Q 025857 119 TPQELQQLQPADGQ---AENIVIDLPDWQVIPAENIVASFQG--SGKTVFAI-SKTPSEAQIFLEALEQGLGGIVLK 189 (247)
Q Consensus 119 ~~e~le~a~~~~~~---~~~vVv~~~DWtiIPlENlIA~~q~--~~~~lia~-v~~~~EA~val~~LE~G~DGVll~ 189 (247)
.+++.+++..+.+. .|+++|+...=--.=.-+.|+.+.. .+..|++. +-+++.|+-+ ++.|+|||.+.
T Consensus 105 ~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~L---i~aGAD~ikVg 178 (343)
T TIGR01305 105 SDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEEL---ILSGADIVKVG 178 (343)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHH---HHcCCCEEEEc
Confidence 45666666555543 7999999763222222233443332 23567777 7888888755 46799999866
No 141
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=53.94 E-value=1.2e+02 Score=26.98 Aligned_cols=121 Identities=12% Similarity=-0.019 Sum_probs=74.1
Q ss_pred chhHHHHHHHhCCcEEEec--Ccc-hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCe
Q 025857 59 SKQVMTAAVERGWNTFVFL--SEN-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~--~~~-~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~ 135 (247)
-.+++.+.++.|+..+=+. .++ .+..+++.+- .+ .+..-+-.-..|.++++.+.+... .+++
T Consensus 27 a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~---~~----------~~p~~~vGaGTV~~~~~~~~a~~a--GA~F 91 (213)
T PRK06552 27 ALKISLAVIKGGIKAIEVTYTNPFASEVIKELVEL---YK----------DDPEVLIGAGTVLDAVTARLAILA--GAQF 91 (213)
T ss_pred HHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHH---cC----------CCCCeEEeeeeCCCHHHHHHHHHc--CCCE
Confidence 3567778888888875443 221 2222232210 00 000112234567888988887654 4678
Q ss_pred EEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC---HHHHHHHHHhh
Q 025857 136 IVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED---VKAVLALKEYF 203 (247)
Q Consensus 136 vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d---~~ev~~l~~~~ 203 (247)
+|--..+ +.++...+..+.-.+-.+.|++|+..+ ++.|+|-|-+-|.+ ++.++.++..+
T Consensus 92 ivsP~~~------~~v~~~~~~~~i~~iPG~~T~~E~~~A---~~~Gad~vklFPa~~~G~~~ik~l~~~~ 153 (213)
T PRK06552 92 IVSPSFN------RETAKICNLYQIPYLPGCMTVTEIVTA---LEAGSEIVKLFPGSTLGPSFIKAIKGPL 153 (213)
T ss_pred EECCCCC------HHHHHHHHHcCCCEECCcCCHHHHHHH---HHcCCCEEEECCcccCCHHHHHHHhhhC
Confidence 6622222 456666667777889999999999776 57999999996655 55566555544
No 142
>PRK09206 pyruvate kinase; Provisional
Probab=53.91 E-value=28 Score=34.94 Aligned_cols=73 Identities=15% Similarity=0.170 Sum_probs=56.4
Q ss_pred ChhhHhhhccccCCCCeEEEecC-CC-eeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 025857 119 TPQELQQLQPADGQAENIVIDLP-DW-QVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (247)
Q Consensus 119 ~~e~le~a~~~~~~~~~vVv~~~-DW-tiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ 194 (247)
|.++++.+. ....||+-+.|= .- .|+.+-+++++..+.+..|++-..+.+--+-.=++++. +|||++.+.|.+
T Consensus 174 D~~di~f~~--~~~vD~ia~SFVr~~~Dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeIl~~-~DgImVaRGDLg 248 (470)
T PRK09206 174 DKQDLIFGC--EQGVDFVAASFIRKRSDVLEIREHLKAHGGENIQIISKIENQEGLNNFDEILEA-SDGIMVARGDLG 248 (470)
T ss_pred HHHHHHHHH--HcCCCEEEEcCCCCHHHHHHHHHHHHHcCCCCceEEEEECCHHHHHhHHHHHHh-CCEEEECcchhh
Confidence 444444444 335899888873 33 38888899987544567899999999999999999999 999999999843
No 143
>PLN02334 ribulose-phosphate 3-epimerase
Probab=53.11 E-value=58 Score=28.59 Aligned_cols=125 Identities=14% Similarity=0.169 Sum_probs=60.9
Q ss_pred hhHHHHHHHhCCcEEEecCcc--hHHH-hhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCC--CC
Q 025857 60 KQVMTAAVERGWNTFVFLSEN--QQLA-IDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ--AE 134 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~~~--~e~~-~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~--~~ 134 (247)
-+.+..|++.|+|++.|.-+. .+.. +.+ ..+.+.|..+|..+.-.++.+. +...... .|
T Consensus 78 ~d~~~~~~~~gad~v~vH~~q~~~d~~~~~~--------------~~i~~~g~~iGls~~~~t~~~~--~~~~~~~~~~D 141 (229)
T PLN02334 78 EDYVPDFAKAGASIFTFHIEQASTIHLHRLI--------------QQIKSAGMKAGVVLNPGTPVEA--VEPVVEKGLVD 141 (229)
T ss_pred HHHHHHHHHcCCCEEEEeeccccchhHHHHH--------------HHHHHCCCeEEEEECCCCCHHH--HHHHHhccCCC
Confidence 456788899999998664330 1111 110 1112345566666643333332 2222234 78
Q ss_pred eEEEe-----cCC--CeeechhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEe-----cCCHH-HHHHH
Q 025857 135 NIVID-----LPD--WQVIPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLK-----VEDVK-AVLAL 199 (247)
Q Consensus 135 ~vVv~-----~~D--WtiIPlENlIA~~q~~--~~~lia~v~~~~EA~val~~LE~G~DGVll~-----~~d~~-ev~~l 199 (247)
|+.+- +.. |....+|.+-. +... +..|.+ ..-. ..+.+-++++.|+|||++- .+|+. .++++
T Consensus 142 yi~~~~v~pg~~~~~~~~~~~~~i~~-~~~~~~~~~I~a-~GGI-~~e~i~~l~~aGad~vvvgsai~~~~d~~~~~~~l 218 (229)
T PLN02334 142 MVLVMSVEPGFGGQSFIPSMMDKVRA-LRKKYPELDIEV-DGGV-GPSTIDKAAEAGANVIVAGSAVFGAPDYAEVISGL 218 (229)
T ss_pred EEEEEEEecCCCccccCHHHHHHHHH-HHHhCCCCcEEE-eCCC-CHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHH
Confidence 87442 222 33334555432 2221 122322 2222 2345667889999999764 45553 34445
Q ss_pred HHhh
Q 025857 200 KEYF 203 (247)
Q Consensus 200 ~~~~ 203 (247)
++.+
T Consensus 219 ~~~~ 222 (229)
T PLN02334 219 RASV 222 (229)
T ss_pred HHHH
Confidence 5443
No 144
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=52.53 E-value=1e+02 Score=28.34 Aligned_cols=70 Identities=14% Similarity=0.152 Sum_probs=42.6
Q ss_pred ecChhhHhhhccccCCCCeEEEec-----CCCeeechhhhhhcccCC--CceEEEE--cCCHHHHHHHHHHhhcccCeEE
Q 025857 117 VSTPQELQQLQPADGQAENIVIDL-----PDWQVIPAENIVASFQGS--GKTVFAI--SKTPSEAQIFLEALEQGLGGIV 187 (247)
Q Consensus 117 I~~~e~le~a~~~~~~~~~vVv~~-----~DWtiIPlENlIA~~q~~--~~~lia~--v~~~~EA~val~~LE~G~DGVl 187 (247)
+.+.++...+.. ..++.+++.. .||.+.+++.|....+.. +..||+. +.+..++.. +|..|+|||.
T Consensus 180 v~s~~~a~~a~~--~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~k---al~lGAd~V~ 254 (299)
T cd02809 180 ILTPEDALRAVD--AGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLK---ALALGADAVL 254 (299)
T ss_pred cCCHHHHHHHHH--CCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHH---HHHcCCCEEE
Confidence 456666555543 3577887743 367777777665443322 3455543 346655554 4568999999
Q ss_pred EecC
Q 025857 188 LKVE 191 (247)
Q Consensus 188 l~~~ 191 (247)
+-+.
T Consensus 255 ig~~ 258 (299)
T cd02809 255 IGRP 258 (299)
T ss_pred EcHH
Confidence 9875
No 145
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=52.39 E-value=1.3e+02 Score=26.96 Aligned_cols=77 Identities=27% Similarity=0.240 Sum_probs=52.1
Q ss_pred EecChhhHhhhccccCCCCeEEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC---
Q 025857 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED--- 192 (247)
Q Consensus 116 ~I~~~e~le~a~~~~~~~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d--- 192 (247)
.|.++++.+.+... .+++++.-..+. .++...+..+.-++-.+.|+.| +..+++.|+|-|-+-|.+
T Consensus 73 TVl~~~~a~~a~~a--GA~FivsP~~~~------~vi~~a~~~~i~~iPG~~TptE---i~~a~~~Ga~~vKlFPa~~~g 141 (212)
T PRK05718 73 TVLNPEQLAQAIEA--GAQFIVSPGLTP------PLLKAAQEGPIPLIPGVSTPSE---LMLGMELGLRTFKFFPAEASG 141 (212)
T ss_pred eccCHHHHHHHHHc--CCCEEECCCCCH------HHHHHHHHcCCCEeCCCCCHHH---HHHHHHCCCCEEEEccchhcc
Confidence 45566776666543 577877554443 4555555666667778999999 456789999999998865
Q ss_pred -HHHHHHHHHhh
Q 025857 193 -VKAVLALKEYF 203 (247)
Q Consensus 193 -~~ev~~l~~~~ 203 (247)
++-++.|+..+
T Consensus 142 g~~~lk~l~~p~ 153 (212)
T PRK05718 142 GVKMLKALAGPF 153 (212)
T ss_pred CHHHHHHHhccC
Confidence 45555555543
No 146
>cd07896 Adenylation_kDNA_ligase_like Adenylation domain of kDNA ligases and similar proteins. The mitochondrial DNA of parasitic protozoans is highly unusual. It is termed the kinetoplast DNA (kDNA) and consists of circular DNA molecules (maxicircles) and several thousand smaller circular molecules (minicircles). This group is composed of kDNA ligase, Chlorella virus DNA ligase, and similar proteins. kDNA ligase and Chlorella virus DNA ligase are the smallest known ATP-dependent ligases. They are involved in DNA replication or repair. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. They have a highly modular architecture consisting of a unique arrangement of two or more discrete domains. The adenylation and the C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains comprise a catalytic core unit that is common to most me
Probab=52.38 E-value=38 Score=28.21 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=22.9
Q ss_pred EcCCHHHHHHHH-HHhhcccCeEEEecCC
Q 025857 165 ISKTPSEAQIFL-EALEQGLGGIVLKVED 192 (247)
Q Consensus 165 ~v~~~~EA~val-~~LE~G~DGVll~~~d 192 (247)
.+.+.++++.++ .+++.|-+|+|++..|
T Consensus 130 ~~~~~~~i~~~~~~~~~~g~EGlv~K~~d 158 (174)
T cd07896 130 PVKSNEALDQYLDEVVAAGGEGLMLRRPD 158 (174)
T ss_pred eeCCHHHHHHHHHHHHhcCCCeEEEecCC
Confidence 346888888777 7889999999999765
No 147
>PRK06247 pyruvate kinase; Provisional
Probab=52.30 E-value=93 Score=31.43 Aligned_cols=132 Identities=19% Similarity=0.251 Sum_probs=85.3
Q ss_pred CchhHHHHHHHhCCcEEEecC-cchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeE
Q 025857 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~-~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~v 136 (247)
.|++.+.-|++-|+|.|-..= .+++.++++.++- ++.+.++..|++++.++.+.+.....|-+
T Consensus 174 kD~~di~f~~~~~vD~ia~SFVr~a~Di~~~r~~l----------------~~~~~iiaKIEt~eav~nldeI~~~~DgI 237 (476)
T PRK06247 174 KDRADLEFALELGVDWVALSFVQRPEDVEEVRKII----------------GGRVPVMAKIEKPQAIDRLEAIVEASDAI 237 (476)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHh----------------hhcCeEEEEECCHHHHHhHHHHHHHcCEE
Confidence 478889999999999755320 1244444433331 12456888999999999887777678887
Q ss_pred EEecCC-Ceeechhhhhh-------cccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC-----
Q 025857 137 VIDLPD-WQVIPAENIVA-------SFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED----- 192 (247)
Q Consensus 137 Vv~~~D-WtiIPlENlIA-------~~q~~~~~lia~-----------v~~~~EA~val~~LE~G~DGVll~~~d----- 192 (247)
+|-..| .-=+|+|.+-+ .....+.-+|.. ..+-.|+--.+.+..-|+|||+|..+.
T Consensus 238 mVaRGDLgve~g~~~v~~~qk~ii~~~~~~gkpvI~ATQmLeSM~~np~PTRAEvtDVaNAV~dG~DavMLS~ETA~G~y 317 (476)
T PRK06247 238 MVARGDLGVEVPLEQVPLIQKRIIRAARRAGKPVVVATQMLESMIENPVPTRAEVSDVATAVLDGADAVMLSAETASGKY 317 (476)
T ss_pred EEccchhccccCHHHHHHHHHHHHHHHHHhCCCEEEECchHHHhhcCCCCCcchhHHHHHHHHhCCcEEEEcchhcCCCC
Confidence 776555 44577766544 222222223321 225567777888889999999999664
Q ss_pred -HHHHHHHHHhhcc
Q 025857 193 -VKAVLALKEYFDG 205 (247)
Q Consensus 193 -~~ev~~l~~~~~~ 205 (247)
.+.|+-+.+++.+
T Consensus 318 PveaV~~m~~I~~~ 331 (476)
T PRK06247 318 PVEAVRTMARIIRQ 331 (476)
T ss_pred HHHHHHHHHHHHHH
Confidence 5566667776654
No 148
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=51.95 E-value=1.8e+02 Score=26.26 Aligned_cols=101 Identities=15% Similarity=0.028 Sum_probs=60.1
Q ss_pred eeecCCceec-CCCCeEEEEEEecChhhHhhhccccCCCCeEEEecCCCe--eec-----hhhhhhcccCCCceEEEEcC
Q 025857 96 LFIKEGEVYD-SGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQ--VIP-----AENIVASFQGSGKTVFAISK 167 (247)
Q Consensus 96 l~i~~g~~~~-~~g~~va~~~~I~~~e~le~a~~~~~~~~~vVv~~~DWt--iIP-----lENlIA~~q~~~~~lia~v~ 167 (247)
+.+.+|.... -+|.+.-......||-++...... ..++++.|-..|=. --| ++.|.+.. .+..+=..++
T Consensus 7 IDl~~Gk~Vrl~~G~~~~~~~~~~dP~~~A~~~~~-~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~~--~~v~vGGGIr 83 (241)
T PRK14114 7 IDLFRGKVARMVKGKKENTIFYEKDPAELVEKLIE-EGFTLIHVVDLSKAIENSVENLPVLEKLSEFA--EHIQIGGGIR 83 (241)
T ss_pred EEEECCEEEEeeccccCcceEECCCHHHHHHHHHH-CCCCEEEEEECCCcccCCcchHHHHHHHHhhc--CcEEEecCCC
Confidence 4455555532 123332233455677766555444 34565554433321 111 23444432 2456677889
Q ss_pred CHHHHHHHHHHhhcccCeEEEec---CCHHHHHHHHHh
Q 025857 168 TPSEAQIFLEALEQGLGGIVLKV---EDVKAVLALKEY 202 (247)
Q Consensus 168 ~~~EA~val~~LE~G~DGVll~~---~d~~ev~~l~~~ 202 (247)
+.++++.+|. .|+|=|++.+ +||+-++++.++
T Consensus 84 s~e~~~~~l~---~Ga~rvvigT~a~~~p~~l~~~~~~ 118 (241)
T PRK14114 84 SLDYAEKLRK---LGYRRQIVSSKVLEDPSFLKFLKEI 118 (241)
T ss_pred CHHHHHHHHH---CCCCEEEECchhhCCHHHHHHHHHh
Confidence 9999998875 6999999999 789888888654
No 149
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=51.86 E-value=88 Score=25.60 Aligned_cols=68 Identities=10% Similarity=0.032 Sum_probs=39.6
Q ss_pred CCCeEEEecCCCee-echhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 025857 132 QAENIVIDLPDWQV-IPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (247)
Q Consensus 132 ~~~~vVv~~~DWti-IPlENlIA~~q~--~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~ 200 (247)
..+.++++..-..- -.--.++..++. .+..++.... ..+......+++.|+++++.+|.++.++.+..
T Consensus 44 ~~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~ls~-~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i 114 (227)
T TIGR03787 44 LPDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIFLTA-RDSDFDTVSGLRLGADDYLTKDISLPHLLARI 114 (227)
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEEEEC-CCCHHHHHHHHhcCCCEEEECCCCHHHHHHHH
Confidence 46777776432210 011223333332 2344555443 34455667889999999999999988776543
No 150
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=51.61 E-value=58 Score=30.56 Aligned_cols=107 Identities=16% Similarity=0.216 Sum_probs=59.0
Q ss_pred hhHHHHHHHhCCcEEEecC---cchHHHh------hccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhcccc
Q 025857 60 KQVMTAAVERGWNTFVFLS---ENQQLAI------DWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPAD 130 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~---~~~e~~~------~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~ 130 (247)
-..+..|-|+|+|++++++ |+.+... .+.-|-.++| -++++-++......
T Consensus 112 e~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaP---------------------tt~~~rl~~i~~~a 170 (265)
T COG0159 112 EKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAP---------------------TTPDERLKKIAEAA 170 (265)
T ss_pred HHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCC---------------------CCCHHHHHHHHHhC
Confidence 3468899999999999864 3322221 2222333333 12345555555544
Q ss_pred CCCCeEEEe--cCCCeee---chhhhhhcccC-CCceEE--EEcCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 131 GQAENIVID--LPDWQVI---PAENIVASFQG-SGKTVF--AISKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 131 ~~~~~vVv~--~~DWtiI---PlENlIA~~q~-~~~~li--a~v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
...=|.|-. .++=+.- ++..+|..+.+ ++..++ -.+++.++|+.+.++ +|||++-+.
T Consensus 171 ~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~----ADGVIVGSA 235 (265)
T COG0159 171 SGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA----ADGVIVGSA 235 (265)
T ss_pred CCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh----CCeEEEcHH
Confidence 443343322 1122222 46777777654 222233 235788888766655 999999876
No 151
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=51.50 E-value=22 Score=33.49 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=29.5
Q ss_pred CCcEEEEEe-CchhHHHHHHHhCCcEEEecCcchHHHhhc
Q 025857 49 KPKRVWIWT-ESKQVMTAAVERGWNTFVFLSENQQLAIDW 87 (247)
Q Consensus 49 ~~K~vWiW~-~~KevvT~ALEsG~d~~v~~~~~~e~~~~l 87 (247)
+.+.+++|| .+.+.+...++.|+|+|+.. +.++.+++
T Consensus 244 ~G~~v~vWTVNd~~~~~~l~~~GVDgIiTD--~P~~l~~~ 281 (315)
T cd08609 244 DNVSVNLWVVNEPWLFSLLWCSGVSSVTTN--ACQLLKDM 281 (315)
T ss_pred CCCEEEEECCCCHHHHHHHHhcCCCEEEcC--CHHHHHHh
Confidence 567899999 56899999999999999964 35555554
No 152
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=51.19 E-value=1e+02 Score=27.57 Aligned_cols=119 Identities=24% Similarity=0.216 Sum_probs=78.2
Q ss_pred chhHHHHHHHhCCcEEEec--Ccc-hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCe
Q 025857 59 SKQVMTAAVERGWNTFVFL--SEN-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~--~~~-~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~ 135 (247)
-.+++.+.++.|+..+=++ .++ .+..+++.+ -.| + -...-..|.++++.+.+... .+++
T Consensus 22 a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~---~~~------------~-~~vGAGTVl~~~~a~~a~~a--GA~F 83 (204)
T TIGR01182 22 ALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRK---EVP------------D-ALIGAGTVLNPEQLRQAVDA--GAQF 83 (204)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHH---HCC------------C-CEEEEEeCCCHHHHHHHHHc--CCCE
Confidence 3678899999999987654 222 222223211 001 1 11234567788988888754 5677
Q ss_pred EEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC----HHHHHHHHHhhc
Q 025857 136 IVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED----VKAVLALKEYFD 204 (247)
Q Consensus 136 vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d----~~ev~~l~~~~~ 204 (247)
+|--. + -+.++...+..+.-.+..+-++.|+.. +++.|+|-|=+-|-+ ++-++.|+..+-
T Consensus 84 ivsP~--~----~~~v~~~~~~~~i~~iPG~~TptEi~~---A~~~Ga~~vKlFPA~~~GG~~yikal~~plp 147 (204)
T TIGR01182 84 IVSPG--L----TPELAKHAQDHGIPIIPGVATPSEIML---ALELGITALKLFPAEVSGGVKMLKALAGPFP 147 (204)
T ss_pred EECCC--C----CHHHHHHHHHcCCcEECCCCCHHHHHH---HHHCCCCEEEECCchhcCCHHHHHHHhccCC
Confidence 65322 2 236777777778888999999999865 578999999998876 566776666553
No 153
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=51.19 E-value=35 Score=31.30 Aligned_cols=45 Identities=16% Similarity=0.279 Sum_probs=31.9
Q ss_pred hhhhhcccCCCceEEE-EcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHH
Q 025857 149 ENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (247)
Q Consensus 149 ENlIA~~q~~~~~lia-~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~ 198 (247)
+.+|+.++..+-.++. .|++.++++.+ ++.|+|||+ ||.|+.+.+
T Consensus 251 ~~~v~~~~~~G~~v~vWTVNd~~~~~~l---~~~GVdgIi--TD~P~~l~~ 296 (300)
T cd08612 251 PSLFRHLQKRGIQVYGWVLNDEEEFERA---FELGADGVM--TDYPTKLRE 296 (300)
T ss_pred HHHHHHHHHCCCEEEEeecCCHHHHHHH---HhcCCCEEE--eCCHHHHHH
Confidence 5677777776666555 46887777655 568999987 888885543
No 154
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=50.59 E-value=33 Score=32.12 Aligned_cols=46 Identities=17% Similarity=0.099 Sum_probs=34.0
Q ss_pred ceEEEEcCCHHH-HHHHHHHhhc---ccCeEEEecC------CHHHHHHHHHhhcc
Q 025857 160 KTVFAISKTPSE-AQIFLEALEQ---GLGGIVLKVE------DVKAVLALKEYFDG 205 (247)
Q Consensus 160 ~~lia~v~~~~E-A~val~~LE~---G~DGVll~~~------d~~ev~~l~~~~~~ 205 (247)
.++..++.+.++ +.-++++++. |+|+|+|+.- .+++++++++.++.
T Consensus 185 ~~i~vevdt~~~~v~eal~~~~~~~~~~d~I~lDn~~~~~G~~~~~~~~~~~~l~~ 240 (302)
T cd01571 185 VPRIALIDTFNDEKEEALKAAKALGDKLDGVRLDTPSSRRGVFRYLIREVRWALDI 240 (302)
T ss_pred CCeEEEEeecCcchHHHHHHHHHhCCCCcEEEECCCCCCCCCHHHHHHHHHHHHHh
Confidence 478999998883 5555555555 6999999985 47777888887754
No 155
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=50.52 E-value=25 Score=33.22 Aligned_cols=37 Identities=8% Similarity=0.024 Sum_probs=29.0
Q ss_pred CCcEEEEEe-CchhHHHHHHHhCCcEEEecCcchHHHhhc
Q 025857 49 KPKRVWIWT-ESKQVMTAAVERGWNTFVFLSENQQLAIDW 87 (247)
Q Consensus 49 ~~K~vWiW~-~~KevvT~ALEsG~d~~v~~~~~~e~~~~l 87 (247)
+.+.|++|| .+.+.+...++.|+|+++... .+..+++
T Consensus 244 ~Gl~V~vWTVNd~~~~~~l~~~GVDgIiTD~--P~~l~~~ 281 (316)
T cd08610 244 ANIHTNVYVINEPWLFSLAWCSGIHSVTTNN--IHLLKQL 281 (316)
T ss_pred CCCEEEEECCCCHHHHHHHHhCCcCEEEeCC--HHHHHHh
Confidence 567899999 568999999999999999743 4455443
No 156
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=50.49 E-value=67 Score=30.99 Aligned_cols=101 Identities=17% Similarity=0.222 Sum_probs=56.5
Q ss_pred hhHHHHHHHhCCcEEEecCcc------hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCC
Q 025857 60 KQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQA 133 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~~~------~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~ 133 (247)
-+.+..||+.|++.|....-+ .+.++.+..+.- ..+..+-|.|.-++.... .+
T Consensus 160 l~~l~~al~~Gv~~VQLR~K~~~~~~~~~~a~~L~~l~~-----------------~~~~~lIIND~vdlAl~~----~a 218 (347)
T PRK02615 160 LEVVEAALKGGVTLVQYRDKTADDRQRLEEAKKLKELCH-----------------RYGALFIVNDRVDIALAV----DA 218 (347)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHH-----------------HhCCeEEEeChHHHHHHc----CC
Confidence 467999999999988875311 233444433321 111334455544444333 33
Q ss_pred CeEEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 025857 134 ENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (247)
Q Consensus 134 ~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll 188 (247)
+-|=+...| .|.+..-.. .+.+.-|-.-++|.+|++.+ .+.|+|-|.+
T Consensus 219 DGVHLgq~d---l~~~~aR~l-lg~~~iIG~S~Hs~~e~~~A---~~~GaDYI~l 266 (347)
T PRK02615 219 DGVHLGQED---LPLAVARQL-LGPEKIIGRSTTNPEEMAKA---IAEGADYIGV 266 (347)
T ss_pred CEEEeChhh---cCHHHHHHh-cCCCCEEEEecCCHHHHHHH---HHcCCCEEEE
Confidence 444443334 455544332 23343455667899887655 5789999987
No 157
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=50.26 E-value=64 Score=32.49 Aligned_cols=120 Identities=15% Similarity=0.099 Sum_probs=66.4
Q ss_pred EeCchhHHHHHHHhCCcEEEecCcchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCe
Q 025857 56 WTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (247)
Q Consensus 56 W~~~KevvT~ALEsG~d~~v~~~~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~ 135 (247)
-.+.++.+.+.+|.|+|-+++...|-+....|..|+.|...+. +. ..+...|.+.++-+.+... .+|.
T Consensus 246 ~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p---------~~-~vi~g~v~t~e~a~~a~~a--GaD~ 313 (505)
T PLN02274 246 RESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYP---------EL-DVIGGNVVTMYQAQNLIQA--GVDG 313 (505)
T ss_pred CccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCC---------CC-cEEEecCCCHHHHHHHHHc--CcCE
Confidence 3467999999999999998876433222222222222221000 10 0122357777776666543 5677
Q ss_pred EEEe--------cC------CCeeechhhhhhcccCCCceEEEEc--CCHHHHHHHHHHhhcccCeEEEec
Q 025857 136 IVID--------LP------DWQVIPAENIVASFQGSGKTVFAIS--KTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 136 vVv~--------~~------DWtiIPlENlIA~~q~~~~~lia~v--~~~~EA~val~~LE~G~DGVll~~ 190 (247)
|++. .+ ..+.=++.++-...+..+..|||.= ++..++.. +|..|+|+|++-+
T Consensus 314 i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~k---Ala~GA~~V~vGs 381 (505)
T PLN02274 314 LRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIVK---ALTLGASTVMMGS 381 (505)
T ss_pred EEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHH---HHHcCCCEEEEch
Confidence 6653 11 1222233443333334456777754 67777655 4567999999865
No 158
>PRK13856 two-component response regulator VirG; Provisional
Probab=50.24 E-value=1e+02 Score=25.98 Aligned_cols=68 Identities=26% Similarity=0.182 Sum_probs=38.7
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~-~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~ 200 (247)
..+.++++..-...=.++ ++..++. ....++.......+......+++.|+|+++.+|-++.++.+..
T Consensus 45 ~~dlvi~d~~l~~~~g~~-l~~~i~~~~~~pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i 113 (241)
T PRK13856 45 TVDVVVVDLNLGREDGLE-IVRSLATKSDVPIIIISGDRLEEADKVVALELGATDFIAKPFGTREFLARI 113 (241)
T ss_pred CCCEEEEeCCCCCCCHHH-HHHHHHhcCCCcEEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHH
Confidence 456666654333221122 2333322 2344555554333334456789999999999999998865433
No 159
>PRK06354 pyruvate kinase; Provisional
Probab=50.03 E-value=93 Score=32.18 Aligned_cols=135 Identities=16% Similarity=0.237 Sum_probs=87.0
Q ss_pred CchhHHHHHHHhCCcEEEecC-cchHHHhhccceeEEeeeeecCCcee-cCCCCeEEEEEEecChhhHhhhccccCCCCe
Q 025857 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVY-DSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~-~~~e~~~~lg~i~~i~pl~i~~g~~~-~~~g~~va~~~~I~~~e~le~a~~~~~~~~~ 135 (247)
.|++.+.-|++-|+|.|-..= .+++.++++.++ + ...+..+.++..|++++.++.+.+-....|-
T Consensus 179 kD~~di~f~~~~~vD~ia~SFVr~~~dv~~~r~~-------------l~~~~~~~~~iiaKIEt~eav~nldeI~~~~Dg 245 (590)
T PRK06354 179 KDREDLIFGLEQGVDWIALSFVRNPSDVLEIREL-------------IEEHNGKHIPIIAKIEKQEAIDNIDAILELCDG 245 (590)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHH-------------HHHhcCCCceEEEEECCHHHHHhHHHHHHhcCE
Confidence 478889999999999755320 124434333221 2 1124466789999999999998777777888
Q ss_pred EEEecCC-Ceeechhhhh-------hcccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC----
Q 025857 136 IVIDLPD-WQVIPAENIV-------ASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (247)
Q Consensus 136 vVv~~~D-WtiIPlENlI-------A~~q~~~~~lia~-----------v~~~~EA~val~~LE~G~DGVll~~~d---- 192 (247)
++|-..| .-=+|.|.+- +.....+.-+|.. ..+-.|+--.+.+..-|+|+|+|..+.
T Consensus 246 ImVaRGDLgve~g~e~v~~~qk~ii~~~~~~gkpvI~ATqmLeSM~~~p~PTRAEvsDVaNav~DG~DavMLS~ETA~G~ 325 (590)
T PRK06354 246 LMVARGDLGVEIPAEEVPLLQKRLIKKANRLGKPVITATQMLDSMQRNPRPTRAEASDVANAILDGTDAVMLSNETAAGD 325 (590)
T ss_pred EEEccchhhcccCcHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEecccccCCC
Confidence 7776554 3345666543 3333333333321 235677777888999999999999665
Q ss_pred --HHHHHHHHHhhcc
Q 025857 193 --VKAVLALKEYFDG 205 (247)
Q Consensus 193 --~~ev~~l~~~~~~ 205 (247)
.+.|+-+.+++.+
T Consensus 326 yPveaV~~m~~I~~~ 340 (590)
T PRK06354 326 YPVEAVQTMATIAVR 340 (590)
T ss_pred CHHHHHHHHHHHHHH
Confidence 5666667776654
No 160
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=49.93 E-value=96 Score=24.88 Aligned_cols=67 Identities=15% Similarity=0.160 Sum_probs=39.9
Q ss_pred CCCeEEEecCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q--~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~ 200 (247)
..+.++++..-...-. -.++..+. ..+..++... ...+......+++.|+++++.+|-+..++.+..
T Consensus 42 ~~dlvl~d~~~~~~~g-~~~~~~l~~~~~~~~iivls-~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i 110 (218)
T TIGR01387 42 DYDLIILDVMLPGMDG-WQILQTLRRSGKQTPVLFLT-ARDSVADKVKGLDLGADDYLVKPFSFSELLARV 110 (218)
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHccCCCCcEEEEE-cCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHH
Confidence 4566666543332211 13333333 2334455544 344556677889999999999999988765443
No 161
>CHL00148 orf27 Ycf27; Reviewed
Probab=49.87 E-value=76 Score=26.07 Aligned_cols=67 Identities=15% Similarity=0.138 Sum_probs=39.0
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~-~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~ 200 (247)
..+.++++..-+..-.+ .++..++. .+..++..... .+......+++.|+++++.+|-++.++.+..
T Consensus 50 ~~d~illd~~~~~~~g~-~~~~~l~~~~~~~ii~ls~~-~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i 117 (240)
T CHL00148 50 QPDLVILDVMMPKLDGY-GVCQEIRKESDVPIIMLTAL-GDVSDRITGLELGADDYVVKPFSPKELEARI 117 (240)
T ss_pred CCCEEEEeCCCCCCCHH-HHHHHHHhcCCCcEEEEECC-CCHHhHHHHHHCCCCEEEeCCCCHHHHHHHH
Confidence 45677776443322122 22222221 23455554433 3445567889999999999999998775543
No 162
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=49.35 E-value=97 Score=30.67 Aligned_cols=117 Identities=16% Similarity=0.151 Sum_probs=66.1
Q ss_pred chhHHHHHHHhCCcEEEecCcchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeEEE
Q 025857 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~~~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vVv 138 (247)
..+.+.+-+|.|++.+++...|.....-+..+..+.. .-.+..+ ....+.+.++...+... .++.+.+
T Consensus 229 ~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~---------~~p~~~v-i~g~v~t~e~a~~l~~a--Gad~i~v 296 (486)
T PRK05567 229 NEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKA---------KYPDVQI-IAGNVATAEAARALIEA--GADAVKV 296 (486)
T ss_pred hHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHh---------hCCCCCE-EEeccCCHHHHHHHHHc--CCCEEEE
Confidence 4688888899999977765432211111112222111 0001121 22567777776666643 4566544
Q ss_pred e-----------cCCCeeechhhh---hhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 025857 139 D-----------LPDWQVIPAENI---VASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 139 ~-----------~~DWtiIPlENl---IA~~q~~~~~lia--~v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
- ..+|-+=.++-| ..+++..+..||+ .+++..|+..|+ ..|+|.|++-+
T Consensus 297 g~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAl---a~GA~~v~~G~ 361 (486)
T PRK05567 297 GIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKAL---AAGASAVMLGS 361 (486)
T ss_pred CCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHH---HhCCCEEEECc
Confidence 1 135543334433 3334445678999 889999987665 56999999864
No 163
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=49.30 E-value=1.9e+02 Score=25.65 Aligned_cols=21 Identities=14% Similarity=0.053 Sum_probs=18.2
Q ss_pred CchhHHHHHHHhCCcEEEecC
Q 025857 58 ESKQVMTAAVERGWNTFVFLS 78 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~ 78 (247)
.+.+-+..+++.|++++++.+
T Consensus 84 ~s~~~~~~~l~~Ga~~Viigt 104 (253)
T PRK02083 84 RSVEDARRLLRAGADKVSINS 104 (253)
T ss_pred CCHHHHHHHHHcCCCEEEECh
Confidence 578889999999999999864
No 164
>PRK04302 triosephosphate isomerase; Provisional
Probab=49.26 E-value=1e+02 Score=26.97 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=23.6
Q ss_pred hhhhhcccC--CCceEEEE--cCCHHHHHHHHHHhhcccCeEEEec
Q 025857 149 ENIVASFQG--SGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 149 ENlIA~~q~--~~~~lia~--v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
+.+++.+.. .+..+++. +++.++++. +++.|+|||++-+
T Consensus 161 ~~~~~~ir~~~~~~pvi~GggI~~~e~~~~---~~~~gadGvlVGs 203 (223)
T PRK04302 161 EDAVEAVKKVNPDVKVLCGAGISTGEDVKA---ALELGADGVLLAS 203 (223)
T ss_pred HHHHHHHHhccCCCEEEEECCCCCHHHHHH---HHcCCCCEEEEeh
Confidence 344444432 23455544 356666665 5789999998754
No 165
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=49.16 E-value=1.3e+02 Score=23.83 Aligned_cols=67 Identities=13% Similarity=0.194 Sum_probs=39.5
Q ss_pred CCCeEEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
..+.++++..-...=-+ .++..+.. ...++..... ++......+++.|++|++.+|-++.++.+.-+
T Consensus 47 ~~dlvi~d~~~~~~~g~-~~~~~l~~-~~~vi~~s~~-~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~ 113 (196)
T PRK10360 47 GVQVCICDISMPDISGL-ELLSQLPK-GMATIMLSVH-DSPALVEQALNAGARGFLSKRCSPDELIAAVH 113 (196)
T ss_pred CCCEEEEeCCCCCCCHH-HHHHHHcc-CCCEEEEECC-CCHHHHHHHHHcCCcEEEECCCCHHHHHHHHH
Confidence 45677776432221111 23444432 3455555443 34456677889999999999999886654433
No 166
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=49.15 E-value=20 Score=33.45 Aligned_cols=40 Identities=25% Similarity=0.242 Sum_probs=25.0
Q ss_pred chhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 025857 147 PAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 147 PlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
.++.|+.++ +-..-+=|...++++|. .+||.|+||||+.+
T Consensus 166 ~l~~i~~~~-~vPvIvDAGiG~pSdaa---~AMElG~daVLvNT 205 (247)
T PF05690_consen 166 NLRIIIERA-DVPVIVDAGIGTPSDAA---QAMELGADAVLVNT 205 (247)
T ss_dssp HHHHHHHHG-SSSBEEES---SHHHHH---HHHHTT-SEEEESH
T ss_pred HHHHHHHhc-CCcEEEeCCCCCHHHHH---HHHHcCCceeehhh
Confidence 356667765 33444445567888875 56899999999976
No 167
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=48.79 E-value=23 Score=30.28 Aligned_cols=30 Identities=10% Similarity=0.143 Sum_probs=25.3
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEec
Q 025857 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (247)
Q Consensus 48 ~~~K~vWiW~-~~KevvT~ALEsG~d~~v~~ 77 (247)
+.-++||+|| .+++.+..++..|+|+|+..
T Consensus 197 ~~g~~v~~wTvn~~~~~~~~~~~gVdgiiTD 227 (229)
T cd08562 197 DAGYKLLVYTVNDPARAAELLEWGVDAIFTD 227 (229)
T ss_pred HCCCEEEEEeCCCHHHHHHHHHCCCCEEEcC
Confidence 3567899999 56999999999999998853
No 168
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=48.70 E-value=54 Score=27.41 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=16.3
Q ss_pred CchhHHHHHHHhCCcEEEecC
Q 025857 58 ESKQVMTAAVERGWNTFVFLS 78 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~ 78 (247)
...+.+..|.+.|+|++.++.
T Consensus 68 d~~~~~~~~~~~g~dgv~vh~ 88 (211)
T cd00429 68 NPERYIEAFAKAGADIITFHA 88 (211)
T ss_pred CHHHHHHHHHHcCCCEEEECc
Confidence 334578889999999988753
No 169
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=48.61 E-value=52 Score=28.79 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=29.3
Q ss_pred CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 025857 158 SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (247)
Q Consensus 158 ~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~ 200 (247)
.+.+++......+++...-..++.|++|.+.++.+++++.+.-
T Consensus 67 p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI 109 (207)
T PRK11475 67 PRMRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEILQQEL 109 (207)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHHH
Confidence 4567776655444444444445899999999999998776543
No 170
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=48.56 E-value=73 Score=28.57 Aligned_cols=82 Identities=15% Similarity=0.150 Sum_probs=44.4
Q ss_pred ChhhHhhhccc--cCCCCeEEEecCCCeeechhhhhhcccCCCceEEE--EcC--CHHHHHH-HHHHhhcccCeEEEe--
Q 025857 119 TPQELQQLQPA--DGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFA--ISK--TPSEAQI-FLEALEQGLGGIVLK-- 189 (247)
Q Consensus 119 ~~e~le~a~~~--~~~~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia--~v~--~~~EA~v-al~~LE~G~DGVll~-- 189 (247)
+.+.+.+++.. ...+||+-+.+. ..+|.+-...+..+..+++ ..+ |.+++.- +-++++.|++|+.+-
T Consensus 154 ~~~~~~~~~~~a~~~GADyikt~~~----~~~~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~ 229 (258)
T TIGR01949 154 DPELVAHAARLGAELGADIVKTPYT----GDIDSFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRN 229 (258)
T ss_pred cHHHHHHHHHHHHHHCCCEEeccCC----CCHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhH
Confidence 34455443222 246888776543 2445443332233344444 455 5666644 447889999999754
Q ss_pred ---cCCHH-HHHHHHHhhc
Q 025857 190 ---VEDVK-AVLALKEYFD 204 (247)
Q Consensus 190 ---~~d~~-ev~~l~~~~~ 204 (247)
.+||. .++++++++.
T Consensus 230 i~~~~dp~~~~~~l~~~i~ 248 (258)
T TIGR01949 230 IFQHDDPVGITKAVCKIVH 248 (258)
T ss_pred hhcCCCHHHHHHHHHHHHh
Confidence 44544 3445555554
No 171
>PRK09483 response regulator; Provisional
Probab=48.35 E-value=1.4e+02 Score=24.12 Aligned_cols=42 Identities=12% Similarity=0.211 Sum_probs=28.9
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 159 ~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
+..++..... .+......+++.|++|.+.+|.++.++.+.-+
T Consensus 75 ~~~ii~ls~~-~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~ 116 (217)
T PRK09483 75 DVKIIMLTVH-TENPLPAKVMQAGAAGYLSKGAAPQEVVSAIR 116 (217)
T ss_pred CCeEEEEeCC-CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Confidence 3455555433 44445567899999999999998886655443
No 172
>PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional
Probab=48.12 E-value=26 Score=33.46 Aligned_cols=50 Identities=12% Similarity=0.144 Sum_probs=33.4
Q ss_pred eechhhhhhcccCCCceEEEE-cCC---------HHHHHHHHHHhhcccCeEEEecCCHHHHH
Q 025857 145 VIPAENIVASFQGSGKTVFAI-SKT---------PSEAQIFLEALEQGLGGIVLKVEDVKAVL 197 (247)
Q Consensus 145 iIPlENlIA~~q~~~~~lia~-v~~---------~~EA~val~~LE~G~DGVll~~~d~~ev~ 197 (247)
+++.-+++++++..+-.|+.- +++ +++++..+-+ +.|+|||+ ||.|+.+.
T Consensus 289 ~~~~~~~v~~ah~~Gl~V~~WTVn~~~~~~~~~d~~~~~~~~~~-~~GVDGIi--TD~P~~~~ 348 (355)
T PRK11143 289 NIKLTGMVKEAHQAKLVVHPYTVRADQLPEYATDVNQLYDILYN-QAGVDGVF--TDFPDKAV 348 (355)
T ss_pred ccChHHHHHHHHHcCCEEEEEEeccccchhhhcChHHHHHHHHH-ccCCCEEE--cCChHHHH
Confidence 344568999998888776554 343 4454433211 88999999 88898554
No 173
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=48.08 E-value=1.2e+02 Score=25.98 Aligned_cols=67 Identities=15% Similarity=0.164 Sum_probs=39.5
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~--~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~ 200 (247)
..+.++++..-+..=-+| ++..++. .+..++..... .+.....++++.|++|.+.+|-+++++.+.-
T Consensus 49 ~~DlvilD~~~p~~~G~e-li~~l~~~~~~~~vI~ls~~-~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i 117 (239)
T PRK10430 49 PIDLILLDIYMQQENGLD-LLPVLHEAGCKSDVIVISSA-ADAATIKDSLHYGVVDYLIKPFQASRFEEAL 117 (239)
T ss_pred CCCEEEEecCCCCCCcHH-HHHHHHhhCCCCCEEEEECC-CcHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 457777765432221122 3333332 23455555443 3334567889999999999999988775543
No 174
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=47.93 E-value=33 Score=30.27 Aligned_cols=37 Identities=16% Similarity=0.066 Sum_probs=28.9
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEecCcchHHHhh
Q 025857 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSENQQLAID 86 (247)
Q Consensus 48 ~~~K~vWiW~-~~KevvT~ALEsG~d~~v~~~~~~e~~~~ 86 (247)
.+-+.+++|+ .+.+.+...++.|+|+++... .+++.+
T Consensus 216 ~~g~~v~~wTvn~~~~~~~l~~~Gvd~IiTD~--p~~~~~ 253 (256)
T cd08601 216 KKGLLVHPYTVNEKADMIRLINWGVDGMFTNY--PDRLKE 253 (256)
T ss_pred HCCCEEEEEecCCHHHHHHHHhcCCCEEEeCC--HHHHHH
Confidence 4567899999 569999999999999998743 445443
No 175
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=47.61 E-value=1.6e+02 Score=26.09 Aligned_cols=127 Identities=16% Similarity=0.202 Sum_probs=61.8
Q ss_pred EEEE--eCchhHHHHHHHhCCcEEEecCc---ch----HHHhhccceeEEeeeeecCC-ceecCCCCeEEEEEEecChhh
Q 025857 53 VWIW--TESKQVMTAAVERGWNTFVFLSE---NQ----QLAIDWSTIALLDPLFIKEG-EVYDSGDRRVGSIIEVSTPQE 122 (247)
Q Consensus 53 vWiW--~~~KevvT~ALEsG~d~~v~~~~---~~----e~~~~lg~i~~i~pl~i~~g-~~~~~~g~~va~~~~I~~~e~ 122 (247)
+|+= -++.+-+...|+.|++.+++.+. +. +.++..|+=.++--+-+.+| .++....+.. ..+ +..+
T Consensus 76 i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~---~~~-~~~~ 151 (229)
T PF00977_consen 76 IQVGGGIRSIEDAERLLDAGADRVVIGTEALEDPELLEELAERYGSQRIVVSLDARDGYKVATNGWQES---SGI-DLEE 151 (229)
T ss_dssp EEEESSE-SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEE---EEE-EHHH
T ss_pred EEEeCccCcHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEecCcccc---CCc-CHHH
Confidence 5552 25899999999999999998642 33 33444454233333333344 3332222221 111 2222
Q ss_pred HhhhccccCCCCeEEEecCCC----eeechh---hhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEec
Q 025857 123 LQQLQPADGQAENIVIDLPDW----QVIPAE---NIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 123 le~a~~~~~~~~~vVv~~~DW----tiIPlE---NlIA~~q~~~~~lia~--v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
.-...... ....+|+..-|. +=+.+| .+.+.. +..+++. +++.+|-+.+. +.|+|||++..
T Consensus 152 ~~~~~~~~-g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~---~~~viasGGv~~~~Dl~~l~---~~G~~gvivg~ 221 (229)
T PF00977_consen 152 FAKRLEEL-GAGEIILTDIDRDGTMQGPDLELLKQLAEAV---NIPVIASGGVRSLEDLRELK---KAGIDGVIVGS 221 (229)
T ss_dssp HHHHHHHT-T-SEEEEEETTTTTTSSS--HHHHHHHHHHH---SSEEEEESS--SHHHHHHHH---HTTECEEEESH
T ss_pred HHHHHHhc-CCcEEEEeeccccCCcCCCCHHHHHHHHHHc---CCCEEEecCCCCHHHHHHHH---HCCCcEEEEeh
Confidence 22222222 244445542111 113333 333332 4455554 68999988877 99999999753
No 176
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=47.34 E-value=51 Score=29.84 Aligned_cols=70 Identities=17% Similarity=0.186 Sum_probs=40.9
Q ss_pred CCCeEEEecCCCeeechhhhhhccc--CCCceEEEEcC--CHHHHHHHH-HHhhcccCeEEEe-----cCCHH-HHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISK--TPSEAQIFL-EALEQGLGGIVLK-----VEDVK-AVLALK 200 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q--~~~~~lia~v~--~~~EA~val-~~LE~G~DGVll~-----~~d~~-ev~~l~ 200 (247)
.+||+=.. |. -+++.+=...+ .-+...+...+ |.+++..++ .+++.|++|+..- .+||. .+++|+
T Consensus 173 GAD~vKt~---~~-~~~~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~p~~~~~~l~ 248 (267)
T PRK07226 173 GADIVKTN---YT-GDPESFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHEDPEAITRAIS 248 (267)
T ss_pred CCCEEeeC---CC-CCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCCHHHHHHHHH
Confidence 57876444 32 13443322222 23455555667 888887775 7899999999754 34544 445556
Q ss_pred Hhhcc
Q 025857 201 EYFDG 205 (247)
Q Consensus 201 ~~~~~ 205 (247)
.++..
T Consensus 249 ~~v~~ 253 (267)
T PRK07226 249 AVVHE 253 (267)
T ss_pred HHHhC
Confidence 65543
No 177
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=47.06 E-value=13 Score=36.18 Aligned_cols=34 Identities=32% Similarity=0.506 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHh
Q 025857 169 PSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEY 202 (247)
Q Consensus 169 ~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~ 202 (247)
...-+++-.+||.|+|+|++.++|.+.+++|.++
T Consensus 13 ~~~k~~vt~AlEsGv~~vvv~~~~~~~v~~lg~i 46 (344)
T PRK02290 13 EERKEVVTTALESGVDGVVVDEEDVERVRELGRI 46 (344)
T ss_pred hhHHHHHHHHHHcCCCEEEECHHHhHHHHhhCCe
Confidence 3455677889999999999999988888777664
No 178
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=46.96 E-value=31 Score=31.64 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=25.3
Q ss_pred CCcEEEEEe-CchhHHHHHHHhCCcEEEec
Q 025857 49 KPKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (247)
Q Consensus 49 ~~K~vWiW~-~~KevvT~ALEsG~d~~v~~ 77 (247)
....|++|| .+++.|...++-|+|+|+..
T Consensus 260 ~G~~v~vWTVNd~~~~~~l~~~GVdgIiTD 289 (300)
T cd08612 260 RGIQVYGWVLNDEEEFERAFELGADGVMTD 289 (300)
T ss_pred CCCEEEEeecCCHHHHHHHHhcCCCEEEeC
Confidence 566799999 57999999999999999964
No 179
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=46.80 E-value=36 Score=32.16 Aligned_cols=54 Identities=7% Similarity=0.157 Sum_probs=37.5
Q ss_pred CCeeechhhhhhcccCCCceEEEE-cCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 142 DWQVIPAENIVASFQGSGKTVFAI-SKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 142 DWtiIPlENlIA~~q~~~~~lia~-v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
+|+.+- +.++++++..+-++++- |++.++++.++ +.|+|||+ ||.|+.+.++.+
T Consensus 229 ~~~~l~-~~~v~~a~~~Gl~V~vWTVNd~~~~~~l~---~~GVDgIi--TD~P~~l~~~~~ 283 (316)
T cd08610 229 AYKKLF-SNDIRDYKAANIHTNVYVINEPWLFSLAW---CSGIHSVT--TNNIHLLKQLDH 283 (316)
T ss_pred chhhCC-HHHHHHHHHCCCEEEEECCCCHHHHHHHH---hCCcCEEE--eCCHHHHHHhhc
Confidence 445444 57778887777776665 68888877554 57999976 788886655443
No 180
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=46.58 E-value=86 Score=25.23 Aligned_cols=67 Identities=13% Similarity=0.120 Sum_probs=40.2
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~----~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~ 200 (247)
..+.++++..-...-.+ .++..++. ....++.... ..+......+++.|++|++.+|-++.++.+..
T Consensus 46 ~~d~vi~d~~~~~~~g~-~~~~~l~~~~~~~~~~ii~ls~-~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i 116 (226)
T TIGR02154 46 GPDLILLDWMLPGTSGI-ELCRRLRRRPETRAIPIIMLTA-RGEEEDRVRGLETGADDYITKPFSPRELLARI 116 (226)
T ss_pred CCCEEEEECCCCCCcHH-HHHHHHHccccCCCCCEEEEec-CCCHHHHHHHHhcCcceEEeCCCCHHHHHHHH
Confidence 46777776543332222 23333332 2345555443 33456677889999999999999988765433
No 181
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=45.61 E-value=2.3e+02 Score=25.61 Aligned_cols=126 Identities=15% Similarity=0.066 Sum_probs=65.2
Q ss_pred CchhHHHHHHHhCCcEEEecC---cchHHHhhcccee-EEeeeee--cCCceecCCCCeEEEEEEecChhhHhhhccccC
Q 025857 58 ESKQVMTAAVERGWNTFVFLS---ENQQLAIDWSTIA-LLDPLFI--KEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG 131 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~---~~~e~~~~lg~i~-~i~pl~i--~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~ 131 (247)
++.+-+...|+.|++.+++.+ ++.+..+++.+.. .+ .+.+ .+|.++. +| +.+-++-.-++.+.....
T Consensus 83 rs~e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~~~~~~~i-vvslD~k~g~v~~-~g-----w~~~~~~~~~e~~~~~~~ 155 (241)
T PRK14114 83 RSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKFLKEIDVEP-VFSLDTRGGKVAF-KG-----WLAEEEIDPVSLLKRLKE 155 (241)
T ss_pred CCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHhCCCE-EEEEEccCCEEee-CC-----CeecCCCCHHHHHHHHHh
Confidence 578999999999999999875 4566666653221 01 1222 2332221 11 112222222333332222
Q ss_pred -CCCeEEEec--CC--CeeechhhhhhcccCCCceEEE--EcCCHHHHHHHHHH--hhcc-cCeEEEec
Q 025857 132 -QAENIVIDL--PD--WQVIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEA--LEQG-LGGIVLKV 190 (247)
Q Consensus 132 -~~~~vVv~~--~D--WtiIPlENlIA~~q~~~~~lia--~v~~~~EA~val~~--LE~G-~DGVll~~ 190 (247)
.+..+|+.. +| -+=+.+|.+-.-.+..+..++| .+++.+|-+.++.. +..| ++|+++..
T Consensus 156 ~g~~~ii~tdI~rdGt~~G~d~el~~~l~~~~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~ 224 (241)
T PRK14114 156 YGLEEIVHTEIEKDGTLQEHDFSLTRKIAIEAEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGR 224 (241)
T ss_pred cCCCEEEEEeechhhcCCCcCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEeh
Confidence 344555542 11 1223344332222223445665 46899998877653 2457 99999864
No 182
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=45.43 E-value=85 Score=29.09 Aligned_cols=109 Identities=18% Similarity=0.218 Sum_probs=67.3
Q ss_pred HHHHHHhCCcEEEe---cCcchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeEEEe
Q 025857 63 MTAAVERGWNTFVF---LSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (247)
Q Consensus 63 vT~ALEsG~d~~v~---~~~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vVv~ 139 (247)
++..-+.|+|++++ .+.-.+++++..++.+|.- ....+..+...+ -.+-|+.
T Consensus 62 i~~~~~~GvdaiiIaCf~DPgl~~~Re~~~~PviGi-----------------------~eAsv~~A~~vg--rrfsViT 116 (230)
T COG4126 62 IADGEEQGVDAIIIACFSDPGLAAARERAAIPVIGI-----------------------CEASVLAALFVG--RRFSVIT 116 (230)
T ss_pred hhcccccCCcEEEEEecCChHHHHHHHHhCCCceeh-----------------------hHHHHHHHHHhc--ceEEEEe
Confidence 34455789999885 2233788899888888754 113333333222 2355666
Q ss_pred cCCCeeechhhhhhcccCCC---------ceEEEEcCCHHHHHHHH------HHhhcccCeEEEecCCHHHH
Q 025857 140 LPDWQVIPAENIVASFQGSG---------KTVFAISKTPSEAQIFL------EALEQGLGGIVLKVEDVKAV 196 (247)
Q Consensus 140 ~~DWtiIPlENlIA~~q~~~---------~~lia~v~~~~EA~val------~~LE~G~DGVll~~~d~~ev 196 (247)
..-=...++|+++-.+.-++ ..+++--.+.++|+..+ -+-|.|+|-|+|----++.+
T Consensus 117 tt~rs~~il~~lv~~~g~s~~~~~vrstdl~vL~l~~~~~~~~~~l~~~~~~a~~edgAeaIiLGCAGms~l 188 (230)
T COG4126 117 TTERSRPILEELVRSYGLSRHCRSVRSTDLPVLALEGPPEEAEALLVIEAAEALKEDGAEAIILGCAGMSDL 188 (230)
T ss_pred cCcccHHHHHHHHHhcCccccccceeeCCCCcccccCChHHHHHHHHHHHHHHhhhcCCCEEEEcCccHHHH
Confidence 66555677888887653332 23344445566666544 34589999999988766644
No 183
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=45.29 E-value=33 Score=30.39 Aligned_cols=30 Identities=10% Similarity=0.129 Sum_probs=26.1
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEec
Q 025857 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (247)
Q Consensus 48 ~~~K~vWiW~-~~KevvT~ALEsG~d~~v~~ 77 (247)
.+-++|++|+ .+.+.+...++.|+|+|+..
T Consensus 207 ~~g~~v~~WTvn~~~~~~~l~~~GVdgIiTD 237 (249)
T PRK09454 207 AAGLRILVYTVNDPARARELLRWGVDCICTD 237 (249)
T ss_pred HCCCEEEEEeCCCHHHHHHHHHcCCCEEEeC
Confidence 4677899999 56899999999999999875
No 184
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=45.27 E-value=26 Score=35.00 Aligned_cols=73 Identities=15% Similarity=0.213 Sum_probs=48.9
Q ss_pred EEEEEEecChhhHhhhccc-cCCCCeEEEecCCCeeechhhhhhcccCC--CceEEEE-cCCHHHHHHHHHHhhcccCeE
Q 025857 111 VGSIIEVSTPQELQQLQPA-DGQAENIVIDLPDWQVIPAENIVASFQGS--GKTVFAI-SKTPSEAQIFLEALEQGLGGI 186 (247)
Q Consensus 111 va~~~~I~~~e~le~a~~~-~~~~~~vVv~~~DWtiIPlENlIA~~q~~--~~~lia~-v~~~~EA~val~~LE~G~DGV 186 (247)
++..+.+.. +..+++..+ ...++.++++..+-.-..+.++|+.+... +.-|++. +.+.++|+ ...+.|+|+|
T Consensus 216 Vgaav~~~~-~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~---~l~~~G~d~i 291 (475)
T TIGR01303 216 IGAAVGING-DVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVR---DLLEAGANII 291 (475)
T ss_pred ehheeeeCc-cHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHH---HHHHhCCCEE
Confidence 555655543 333444333 34689999999876668899999998775 4455664 55555555 4557899999
Q ss_pred E
Q 025857 187 V 187 (247)
Q Consensus 187 l 187 (247)
-
T Consensus 292 ~ 292 (475)
T TIGR01303 292 K 292 (475)
T ss_pred E
Confidence 7
No 185
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=45.20 E-value=2.3e+02 Score=26.23 Aligned_cols=105 Identities=15% Similarity=0.155 Sum_probs=0.0
Q ss_pred chhHHHHHHHhCCcEEEe------cCcchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCC
Q 025857 59 SKQVMTAAVERGWNTFVF------LSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 132 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~------~~~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~ 132 (247)
++..+-.|...|+|+++. +..-.++.+.-.++.. -.+++|.+.++++.+... .
T Consensus 113 d~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGl-------------------e~LVEVh~~~El~~a~~~--g 171 (247)
T PRK13957 113 DEIQIREARAFGASAILLIVRILTPSQIKSFLKHASSLGM-------------------DVLVEVHTEDEAKLALDC--G 171 (247)
T ss_pred CHHHHHHHHHcCCCEEEeEHhhCCHHHHHHHHHHHHHcCC-------------------ceEEEECCHHHHHHHHhC--C
Q ss_pred CCeEEEecCCCe--eechhhhhhcccCCCceEEEEcC----CHHHHHHHHHHhhcccCeEEE
Q 025857 133 AENIVIDLPDWQ--VIPAENIVASFQGSGKTVFAISK----TPSEAQIFLEALEQGLGGIVL 188 (247)
Q Consensus 133 ~~~vVv~~~DWt--iIPlENlIA~~q~~~~~lia~v~----~~~EA~val~~LE~G~DGVll 188 (247)
++.+=|+-+|-+ .+.+++-..-+..-+...+.++. +.+|++.+... +||||+
T Consensus 172 a~iiGINnRdL~t~~vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~~----~davLv 229 (247)
T PRK13957 172 AEIIGINTRDLDTFQIHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKFRKL----VDAALI 229 (247)
T ss_pred CCEEEEeCCCCccceECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHh----CCEEEE
No 186
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=45.07 E-value=1.1e+02 Score=24.71 Aligned_cols=67 Identities=16% Similarity=0.107 Sum_probs=39.0
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~--~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~ 200 (247)
..+.++++..-...-. -+++..++. ....++.... ..+......+++.|++|++.+|-++.++.+..
T Consensus 47 ~~dlvl~d~~~~~~~g-~~~~~~l~~~~~~~~ii~ls~-~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i 115 (228)
T PRK11083 47 PPDLVILDVGLPDISG-FELCRQLLAFHPALPVIFLTA-RSDEVDRLVGLEIGADDYVAKPFSPREVAARV 115 (228)
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhhCCCCCEEEEEc-CCcHHHHHHHhhcCCCeEEECCCCHHHHHHHH
Confidence 3566666543332222 233333332 2345555443 33344566789999999999999988775533
No 187
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=44.98 E-value=30 Score=30.21 Aligned_cols=30 Identities=10% Similarity=-0.010 Sum_probs=25.2
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEec
Q 025857 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (247)
Q Consensus 48 ~~~K~vWiW~-~~KevvT~ALEsG~d~~v~~ 77 (247)
++-+.+|+|| .+.+.+...++-|+|+++..
T Consensus 203 ~~Gl~v~vwTVn~~~~~~~l~~~GVdgiiTD 233 (237)
T cd08583 203 KAGIYVYVYTINDLKDAQEYKKLGVYGIYTD 233 (237)
T ss_pred HCCCEEEEEeCCCHHHHHHHHHcCCCEEEeC
Confidence 3567899999 45889999999999998853
No 188
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=44.81 E-value=64 Score=27.46 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=19.6
Q ss_pred cEEEEEeC-chhHHHHHHHhCCcEEEecC
Q 025857 51 KRVWIWTE-SKQVMTAAVERGWNTFVFLS 78 (247)
Q Consensus 51 K~vWiW~~-~KevvT~ALEsG~d~~v~~~ 78 (247)
..+.+-.. ..+.+..+.+.|+|++.++.
T Consensus 64 ~~v~l~v~d~~~~i~~~~~~g~d~v~vh~ 92 (220)
T PRK05581 64 LDVHLMVENPDRYVPDFAKAGADIITFHV 92 (220)
T ss_pred EEEEeeeCCHHHHHHHHHHcCCCEEEEee
Confidence 34655553 34567888899999988764
No 189
>cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=44.64 E-value=28 Score=30.83 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=24.9
Q ss_pred CcEEEEEe-CchhHHHHHHHhCCcEEEec
Q 025857 50 PKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (247)
Q Consensus 50 ~K~vWiW~-~~KevvT~ALEsG~d~~v~~ 77 (247)
.+.|++|| .+++.+..+++.|+|+++..
T Consensus 201 g~~v~~WTVn~~~~~~~l~~~GVdgIiTD 229 (235)
T cd08565 201 GLRLGVWTVNDDSLIRYWLACGVRQLTTD 229 (235)
T ss_pred CCEEEEEccCCHHHHHHHHHcCCCEEEeC
Confidence 67899999 57999999999999999864
No 190
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=44.23 E-value=56 Score=31.02 Aligned_cols=53 Identities=21% Similarity=0.194 Sum_probs=40.4
Q ss_pred hhhhhhcccCCC---ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 025857 148 AENIVASFQGSG---KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (247)
Q Consensus 148 lENlIA~~q~~~---~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~ 203 (247)
+++-|.++.... .+|=.+|.|++||+ ++||.|+|=|+|+.=+|+++++..+++
T Consensus 174 i~~Av~~aR~~~~~~~kIEVEvesle~~~---eAl~agaDiImLDNm~~e~~~~av~~l 229 (280)
T COG0157 174 ITEAVRRARAAAPFTKKIEVEVESLEEAE---EALEAGADIIMLDNMSPEELKEAVKLL 229 (280)
T ss_pred HHHHHHHHHHhCCCCceEEEEcCCHHHHH---HHHHcCCCEEEecCCCHHHHHHHHHHh
Confidence 444554433322 45888999999987 457889999999999999998888874
No 191
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=44.21 E-value=89 Score=29.22 Aligned_cols=75 Identities=20% Similarity=0.217 Sum_probs=44.7
Q ss_pred EEEEEecChhhHhhhccccCCCCeEEEecC------CC---eeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcc
Q 025857 112 GSIIEVSTPQELQQLQPADGQAENIVIDLP------DW---QVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQG 182 (247)
Q Consensus 112 a~~~~I~~~e~le~a~~~~~~~~~vVv~~~------DW---tiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G 182 (247)
.++..+.+.++...+... .+|.+|+.+. +. ....|...+.+... .-||+ +.-.-+.+-+..+|..|
T Consensus 138 ~v~~~v~s~~~A~~a~~~--G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~--iPVia-AGGI~dg~~iaaal~lG 212 (330)
T PF03060_consen 138 KVIPQVTSVREARKAAKA--GADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVD--IPVIA-AGGIADGRGIAAALALG 212 (330)
T ss_dssp EEEEEESSHHHHHHHHHT--T-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-S--S-EEE-ESS--SHHHHHHHHHCT
T ss_pred ccccccCCHHHHHHhhhc--CCCEEEEeccccCCCCCccccceeeHHHHHhhhcC--CcEEE-ecCcCCHHHHHHHHHcC
Confidence 367788888887766543 5888888853 21 24455555555333 34454 56666677777889999
Q ss_pred cCeEEEecC
Q 025857 183 LGGIVLKVE 191 (247)
Q Consensus 183 ~DGVll~~~ 191 (247)
+|||.+-|.
T Consensus 213 A~gV~~GTr 221 (330)
T PF03060_consen 213 ADGVQMGTR 221 (330)
T ss_dssp -SEEEESHH
T ss_pred CCEeecCCe
Confidence 999998653
No 192
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=44.18 E-value=30 Score=29.99 Aligned_cols=30 Identities=17% Similarity=0.291 Sum_probs=25.6
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEec
Q 025857 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (247)
Q Consensus 48 ~~~K~vWiW~-~~KevvT~ALEsG~d~~v~~ 77 (247)
.+.+.+.+|+ .+++.+..+++.|+|+|+..
T Consensus 198 ~~g~~v~~Wtvn~~~~~~~~~~~GVdgi~TD 228 (230)
T cd08563 198 KRGIPVRLWTVNEEEDMKRLKDLGVDGIITN 228 (230)
T ss_pred HCCCEEEEEecCCHHHHHHHHHCCCCEEeCC
Confidence 3567899999 57999999999999998853
No 193
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=43.86 E-value=14 Score=35.93 Aligned_cols=31 Identities=35% Similarity=0.546 Sum_probs=25.4
Q ss_pred HHHHHHHhhcccCeEEEecCCHHHHHHHHHh
Q 025857 172 AQIFLEALEQGLGGIVLKVEDVKAVLALKEY 202 (247)
Q Consensus 172 A~val~~LE~G~DGVll~~~d~~ev~~l~~~ 202 (247)
-+++-.+||.|+|||++.++|.+.+++|.++
T Consensus 15 k~~vt~AlEsGvd~vv~~~~~~~~~~~lg~~ 45 (354)
T PF01959_consen 15 KEVVTAALESGVDGVVVDDEDVEKVRELGRI 45 (354)
T ss_pred HHHHHHHHHcCCCEEEECHhHhhhhhccceE
Confidence 4567789999999999999988877766553
No 194
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=43.69 E-value=50 Score=29.01 Aligned_cols=50 Identities=20% Similarity=0.403 Sum_probs=34.4
Q ss_pred CCeeechhhhhhcccCCCceEEE-EcCCHHHHHHHHHHhhcccCeEEEecCCHHHHH
Q 025857 142 DWQVIPAENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVL 197 (247)
Q Consensus 142 DWtiIPlENlIA~~q~~~~~lia-~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~ 197 (247)
+|+.+. +.++..++..+..+++ .|++.++++.+ ++.|+|||+ ||.|+.+.
T Consensus 196 ~~~~~~-~~~v~~~~~~G~~v~vWTVN~~~~~~~l---~~~gVdgIi--TD~p~~~~ 246 (249)
T cd08561 196 GVPLVT-PRFVRAAHAAGLEVHVWTVNDPAEMRRL---LDLGVDGII--TDRPDLLL 246 (249)
T ss_pred CeecCC-HHHHHHHHHCCCEEEEEecCCHHHHHHH---HhcCCCEEE--cCCHHHHH
Confidence 344443 5777777777777664 45888888775 477999976 67777543
No 195
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=43.33 E-value=2.3e+02 Score=24.95 Aligned_cols=106 Identities=15% Similarity=0.120 Sum_probs=53.5
Q ss_pred hhHHHHHHHhCCcEEEecCcc---hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeE
Q 025857 60 KQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~~~---~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~v 136 (247)
.+.+..+++.|++.|..+..+ .+..+...++..+.. +.+..+-|.|.-++-... .++-|
T Consensus 22 ~~~l~~~l~~G~~~vqLR~k~~~~~~~~~la~~l~~~~~--------------~~~~~liInd~~~lA~~~----~adGV 83 (211)
T PRK03512 22 VQWIERLLDAGVRTLQLRIKDRRDEEVEADVVAAIALGR--------------RYQARLFINDYWRLAIKH----QAYGV 83 (211)
T ss_pred HHHHHHHHhCCCCEEEEcCCCCCHHHHHHHHHHHHHHHH--------------HhCCeEEEeCHHHHHHHc----CCCEE
Confidence 467999999999998886422 222222222222211 011223333333322222 22333
Q ss_pred EEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 025857 137 VIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 137 Vv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
=+...| .|++..-..+ +.+.-|-.-+++.+|++.+ .+.|+|-+.+.|
T Consensus 84 Hlg~~d---~~~~~~r~~~-~~~~~iG~S~H~~~e~~~A---~~~gaDYi~lgp 130 (211)
T PRK03512 84 HLGQED---LETADLNAIR-AAGLRLGVSTHDDMEIDVA---LAARPSYIALGH 130 (211)
T ss_pred EcChHh---CCHHHHHHhc-CCCCEEEEeCCCHHHHHHH---hhcCCCEEEECC
Confidence 333334 2444332221 2233455667899887555 478999999875
No 196
>cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=43.29 E-value=33 Score=30.23 Aligned_cols=30 Identities=13% Similarity=0.000 Sum_probs=25.1
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEec
Q 025857 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (247)
Q Consensus 48 ~~~K~vWiW~-~~KevvT~ALEsG~d~~v~~ 77 (247)
.+-++|++|| .+.+.+...++.|+|+++..
T Consensus 197 ~~G~~v~vWTVn~~~~~~~l~~~GVdgiiTD 227 (229)
T cd08581 197 AGTWKWVIYEVNEPAEALALAARGVALIETD 227 (229)
T ss_pred hCCceEEEEEcCCHHHHHHHHHhCCcEEEcC
Confidence 3556799999 57888999999999998853
No 197
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=43.23 E-value=1.3e+02 Score=26.95 Aligned_cols=76 Identities=16% Similarity=0.169 Sum_probs=43.2
Q ss_pred cChhhHhhhccccCCCCeEEEecCCCe------eec-hhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEE
Q 025857 118 STPQELQQLQPADGQAENIVIDLPDWQ------VIP-AENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVL 188 (247)
Q Consensus 118 ~~~e~le~a~~~~~~~~~vVv~~~DWt------iIP-lENlIA~~q~~~~~lia--~v~~~~EA~val~~LE~G~DGVll 188 (247)
.+|.++-...... ++.+++-..|=+ ..+ ++.+... ....+.+ .+++.++++.++. .|+|+|++
T Consensus 30 ~dp~~~a~~~~~~--~~~l~ivDldga~~g~~~n~~~i~~i~~~---~~~pv~~gGGIrs~edv~~l~~---~G~~~viv 101 (228)
T PRK04128 30 GDPVEIALRFSEY--VDKIHVVDLDGAFEGKPKNLDVVKNIIRE---TGLKVQVGGGLRTYESIKDAYE---IGVENVII 101 (228)
T ss_pred CCHHHHHHHHHHh--CCEEEEEECcchhcCCcchHHHHHHHHhh---CCCCEEEcCCCCCHHHHHHHHH---CCCCEEEE
Confidence 3666654443332 565555444422 222 2444332 2333444 5899999998865 59999999
Q ss_pred ecC--CHHHHHHHHH
Q 025857 189 KVE--DVKAVLALKE 201 (247)
Q Consensus 189 ~~~--d~~ev~~l~~ 201 (247)
.+. ||+-++++.+
T Consensus 102 Gtaa~~~~~l~~~~~ 116 (228)
T PRK04128 102 GTKAFDLEFLEKVTS 116 (228)
T ss_pred CchhcCHHHHHHHHH
Confidence 766 4555555443
No 198
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=43.23 E-value=2.4e+02 Score=25.12 Aligned_cols=102 Identities=10% Similarity=0.069 Sum_probs=56.1
Q ss_pred hhHHHHHHHhC-CcEEEecCcc------hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCC
Q 025857 60 KQVMTAAVERG-WNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 132 (247)
Q Consensus 60 KevvT~ALEsG-~d~~v~~~~~------~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~ 132 (247)
-+.+..||++| ++.|..+.-+ .++++++..+.. ..| +.+-|.|.-++-... .
T Consensus 29 ~~~l~~al~~G~v~~vQlR~K~l~~~~~~~~a~~l~~l~~-------------~~g----v~liINd~~dlA~~~----~ 87 (221)
T PRK06512 29 AKLLRAALQGGDVASVILPQYGLDEATFQKQAEKLVPVIQ-------------EAG----AAALIAGDSRIAGRV----K 87 (221)
T ss_pred HHHHHHHHcCCCccEEEEeCCCCCHHHHHHHHHHHHHHHH-------------HhC----CEEEEeCHHHHHHHh----C
Confidence 46899999999 7988885311 233334333221 111 233344443333222 2
Q ss_pred CCeEEEecCCCeeechhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEec
Q 025857 133 AENIVIDLPDWQVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 133 ~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~--v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
++-|=+-..| .|++..-..+. ...+|.. .++.++|+. +.+.|+|-|.+.|
T Consensus 88 adGVHLg~~d---~~~~~~r~~~~--~~~iiG~s~~~s~~~a~~---A~~~gaDYv~~Gp 139 (221)
T PRK06512 88 ADGLHIEGNL---AALAEAIEKHA--PKMIVGFGNLRDRHGAME---IGELRPDYLFFGK 139 (221)
T ss_pred CCEEEECccc---cCHHHHHHhcC--CCCEEEecCCCCHHHHHH---hhhcCCCEEEECC
Confidence 3333232223 46676665543 2356766 467887765 5579999999954
No 199
>PRK05826 pyruvate kinase; Provisional
Probab=42.93 E-value=38 Score=33.89 Aligned_cols=38 Identities=21% Similarity=0.196 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHhhcccCeEEEe-cCCHHHHHHHHHhhcc
Q 025857 168 TPSEAQIFLEALEQGLGGIVLK-VEDVKAVLALKEYFDG 205 (247)
Q Consensus 168 ~~~EA~val~~LE~G~DGVll~-~~d~~ev~~l~~~~~~ 205 (247)
+..|.+...-+|+.|+|||.++ .++++++++++++++.
T Consensus 172 te~D~~~i~~ald~g~d~I~~sfV~saedv~~l~~~l~~ 210 (465)
T PRK05826 172 TEKDKADIKFAAEQGVDYIAVSFVRSAEDVEEARRLLRE 210 (465)
T ss_pred ChhhHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH
Confidence 4566777778999999999998 8899999999999875
No 200
>PRK10537 voltage-gated potassium channel; Provisional
Probab=42.61 E-value=2.2e+02 Score=27.75 Aligned_cols=71 Identities=13% Similarity=-0.041 Sum_probs=47.2
Q ss_pred EEEEEecChhhHhhhccccCCCCeEEEecCCCeeechhhhhhc----ccCCCceEEEEcCCHHHHHHHHHHhhcccCeEE
Q 025857 112 GSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVAS----FQGSGKTVFAISKTPSEAQIFLEALEQGLGGIV 187 (247)
Q Consensus 112 a~~~~I~~~e~le~a~~~~~~~~~vVv~~~DWtiIPlENlIA~----~q~~~~~lia~v~~~~EA~val~~LE~G~DGVl 187 (247)
.++.+.++++.++++-. .+++.+|+...| .-+|+.+. -.+.+.++++.+++.+.++.. .+.|+|-|+
T Consensus 284 vI~GD~td~e~L~~AgI--~~A~aVI~~t~d----D~~Nl~ivL~ar~l~p~~kIIa~v~~~~~~~~L---~~~GaD~VI 354 (393)
T PRK10537 284 LIPGDSSDSAVLKKAGA--ARARAILALRDN----DADNAFVVLAAKEMSSDVKTVAAVNDSKNLEKI---KRVHPDMIF 354 (393)
T ss_pred EEEeCCCCHHHHHhcCc--ccCCEEEEcCCC----hHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHH---HhcCCCEEE
Confidence 45566677777776653 356777776654 34555432 223457899999999987766 458999977
Q ss_pred EecC
Q 025857 188 LKVE 191 (247)
Q Consensus 188 l~~~ 191 (247)
-+.+
T Consensus 355 sp~~ 358 (393)
T PRK10537 355 SPQL 358 (393)
T ss_pred CHHH
Confidence 5544
No 201
>PRK06354 pyruvate kinase; Provisional
Probab=42.47 E-value=49 Score=34.12 Aligned_cols=73 Identities=12% Similarity=0.166 Sum_probs=54.6
Q ss_pred ChhhHhhhccccCCCCeEEEec-CCCe-eechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 025857 119 TPQELQQLQPADGQAENIVIDL-PDWQ-VIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (247)
Q Consensus 119 ~~e~le~a~~~~~~~~~vVv~~-~DWt-iIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ 194 (247)
|.++++.+. ....||+-+.| ++-+ |+-+-+++.+..+.+..+++-..+.+--+-.-++++. +|||++.+-|.+
T Consensus 180 D~~di~f~~--~~~vD~ia~SFVr~~~dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeI~~~-~DgImVaRGDLg 254 (590)
T PRK06354 180 DREDLIFGL--EQGVDWIALSFVRNPSDVLEIRELIEEHNGKHIPIIAKIEKQEAIDNIDAILEL-CDGLMVARGDLG 254 (590)
T ss_pred HHHHHHHHH--HcCCCEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHh-cCEEEEccchhh
Confidence 344444433 34689988887 3333 6667788854345678899999999999999999999 999999999843
No 202
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=42.06 E-value=1.3e+02 Score=24.74 Aligned_cols=68 Identities=18% Similarity=0.192 Sum_probs=40.0
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~--~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
..+.++++..-+..-- -+++..++. .+..++... ...+......+++.|+|+++.+|-++.++.+...
T Consensus 44 ~~dlvild~~~~~~~g-~~~~~~lr~~~~~~pii~ls-~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~ 113 (227)
T PRK09836 44 DYDLIILDIMLPDVNG-WDIVRMLRSANKGMPILLLT-ALGTIEHRVKGLELGADDYLVKPFAFAELLARVR 113 (227)
T ss_pred CCCEEEEECCCCCCCH-HHHHHHHHhcCCCCCEEEEE-cCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHH
Confidence 4567777644332211 223333332 234455444 3344556678899999999999999887765433
No 203
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=41.78 E-value=1e+02 Score=26.73 Aligned_cols=92 Identities=13% Similarity=0.147 Sum_probs=51.9
Q ss_pred hhhhhhcccCCC--ceEEEEcCC-HHHHHHHHHHhhcccCeEEEecCCH-------------HHHHHHHHhhcccccccc
Q 025857 148 AENIVASFQGSG--KTVFAISKT-PSEAQIFLEALEQGLGGIVLKVEDV-------------KAVLALKEYFDGRNEVSN 211 (247)
Q Consensus 148 lENlIA~~q~~~--~~lia~v~~-~~EA~val~~LE~G~DGVll~~~d~-------------~ev~~l~~~~~~~~~~~~ 211 (247)
.++++..+.... .++.+-+++ .++++.+ .|.|+|.|-+.-.-. +.+..+.+.++..+...-
T Consensus 53 ~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a---~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~ 129 (265)
T cd03174 53 DWEVLRAIRKLVPNVKLQALVRNREKGIERA---LEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGL 129 (265)
T ss_pred HHHHHHHHHhccCCcEEEEEccCchhhHHHH---HhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC
Confidence 355555554443 567677777 5555555 466899887664322 123333444433333444
Q ss_pred eeeeEEEEEEE--------------EEecCCcceeee-eccCCCCCC
Q 025857 212 LLSLMKATVTR--------------VDVAGMGDRVCV-DLCSLMRPG 243 (247)
Q Consensus 212 ~l~L~~AtVT~--------------V~~vGmGDRVCV-DTcSlm~~G 243 (247)
.+.+....+++ +...| -|++|+ ||...+.|-
T Consensus 130 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g-~~~i~l~Dt~G~~~P~ 175 (265)
T cd03174 130 EVEGSLEDAFGCKTDPEYVLEVAKALEEAG-ADEISLKDTVGLATPE 175 (265)
T ss_pred eEEEEEEeecCCCCCHHHHHHHHHHHHHcC-CCEEEechhcCCcCHH
Confidence 56666556666 44566 456665 887777653
No 204
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=41.51 E-value=33 Score=30.79 Aligned_cols=29 Identities=14% Similarity=0.352 Sum_probs=25.1
Q ss_pred CCcEEEEEe-CchhHHHHHHHhCCcEEEec
Q 025857 49 KPKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (247)
Q Consensus 49 ~~K~vWiW~-~~KevvT~ALEsG~d~~v~~ 77 (247)
+-..|++|| .+.+.+...++.|+|+|+..
T Consensus 230 ~G~~v~vWTVNd~~~~~~l~~~GVdgIiTD 259 (264)
T cd08575 230 RGIQVYLWVLNDEEDFEEAFDLGADGVMTD 259 (264)
T ss_pred cCCcEEEEEECCHHHHHHHHhcCCCEEEeC
Confidence 466799999 56999999999999999964
No 205
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=41.34 E-value=3e+02 Score=25.71 Aligned_cols=140 Identities=16% Similarity=0.248 Sum_probs=80.7
Q ss_pred eCchhHHHHHHHhCCcEEEec-Ccc---------hHHHhhccceeEEe---------e----ee----ecC---------
Q 025857 57 TESKQVMTAAVERGWNTFVFL-SEN---------QQLAIDWSTIALLD---------P----LF----IKE--------- 100 (247)
Q Consensus 57 ~~~KevvT~ALEsG~d~~v~~-~~~---------~e~~~~lg~i~~i~---------p----l~----i~~--------- 100 (247)
++..++...+.|+|-|+|++. +.+ .+.+++-.++.+|- | +| +|.
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~~is~~aDavff~svLNS~n~~~i~ga 107 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVILFPGSPSGISPYADAVFFPSVLNSDNPYWIVGA 107 (240)
T ss_pred cccHHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHHHhhcCCCEEEecCChhccCccCCeEEEEEEecCCCcccccch
Confidence 567899999999999999984 211 23344333444432 2 11 121
Q ss_pred ------------------CceecCCCCeEEEEEEec----ChhhHhhhccccC---CCCeEEEec--CCCeeechhhhhh
Q 025857 101 ------------------GEVYDSGDRRVGSIIEVS----TPQELQQLQPADG---QAENIVIDL--PDWQVIPAENIVA 153 (247)
Q Consensus 101 ------------------g~~~~~~g~~va~~~~I~----~~e~le~a~~~~~---~~~~vVv~~--~DWtiIPlENlIA 153 (247)
|.++-+.|..+|.+.... +++++..+..+.. +.+.+-++. .-..-+|.|-+=.
T Consensus 108 q~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~~~iaa~y~la~~~~g~~~~YlEagsga~~Pv~~e~v~~ 187 (240)
T COG1646 108 QVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDKEDIAAYYALAEKYLGMPVVYLEAGSGAGDPVPVEMVSR 187 (240)
T ss_pred hhhhhHHHHhhhheecceEEEEECCCCceeeecccccCCCCcHHHHHHHHHHHHHhCCeEEEEEecCCCCCCcCHHHHHH
Confidence 344445555667766555 5666665554443 345555554 3566777776633
Q ss_pred cccCCCceEE--EEcCCHHHHHHHHHHhhcccCeEEEec---CCHHHHHHHHH
Q 025857 154 SFQGSGKTVF--AISKTPSEAQIFLEALEQGLGGIVLKV---EDVKAVLALKE 201 (247)
Q Consensus 154 ~~q~~~~~li--a~v~~~~EA~val~~LE~G~DGVll~~---~d~~ev~~l~~ 201 (247)
-+.. +.+| ...++.|.|+. ..+.|+|-||.-+ +|++.+.++.+
T Consensus 188 v~~~--~~LivGGGIrs~E~A~~---~a~agAD~IVtG~iiee~~~~~~~~v~ 235 (240)
T COG1646 188 VLSD--TPLIVGGGIRSPEQARE---MAEAGADTIVTGTIIEEDPDKALETVE 235 (240)
T ss_pred hhcc--ceEEEcCCcCCHHHHHH---HHHcCCCEEEECceeecCHHHHHHHHH
Confidence 3332 2433 34578887765 4567999999654 56654444443
No 206
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=41.30 E-value=22 Score=34.34 Aligned_cols=123 Identities=15% Similarity=0.176 Sum_probs=67.4
Q ss_pred hHHHHHHHhCCcEEEecCcchHHHhhc------cceeEEe-eeeecC----CceecCCCCeEEEEEEecChhhHhhhccc
Q 025857 61 QVMTAAVERGWNTFVFLSENQQLAIDW------STIALLD-PLFIKE----GEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (247)
Q Consensus 61 evvT~ALEsG~d~~v~~~~~~e~~~~l------g~i~~i~-pl~i~~----g~~~~~~g~~va~~~~I~~~e~le~a~~~ 129 (247)
|-.-++||.|-++++++++-++....+ |.--++. .++-.- ...++.-|.. ..+++..+.++++.+...
T Consensus 61 e~~la~Le~g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~-v~~~d~~d~~~l~~~l~~ 139 (386)
T PF01053_consen 61 EQRLAALEGGEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVE-VTFVDPTDLEALEAALRP 139 (386)
T ss_dssp HHHHHHHHT-SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSE-EEEESTTSHHHHHHHHCT
T ss_pred HHHHHHhhcccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCcE-EEEeCchhHHHHHhhccc
Confidence 444589999999999998644432222 2111111 111100 1233445544 355566666766655432
Q ss_pred cCCCCeEEEecC---CCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEE
Q 025857 130 DGQAENIVIDLP---DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIV 187 (247)
Q Consensus 130 ~~~~~~vVv~~~---DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVl 187 (247)
+.+.|.++.. -.+++.++.|.+.++..+ .++.+|.|.=-.=..+..|+.|+|=|+
T Consensus 140 --~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g-~~~~vVDnT~atp~~~~pL~~GaDivv 197 (386)
T PF01053_consen 140 --NTKLVFLESPSNPTLEVPDLEAIAKLAKEHG-DILVVVDNTFATPYNQNPLELGADIVV 197 (386)
T ss_dssp --TEEEEEEESSBTTTTB---HHHHHHHHHHTT-T-EEEEECTTTHTTTC-GGGGT-SEEE
T ss_pred --cceEEEEEcCCCcccccccHHHHHHHHHHhC-CceEEeeccccceeeeccCcCCceEEE
Confidence 5677788864 568999999988776654 456666554333477788999999444
No 207
>PRK09206 pyruvate kinase; Provisional
Probab=41.00 E-value=1e+02 Score=31.05 Aligned_cols=135 Identities=16% Similarity=0.205 Sum_probs=85.8
Q ss_pred CchhHHHHHHHhCCcEEEecC-cchHHHhhccceeEEeeeeecCCceecCC-CCeEEEEEEecChhhHhhhccccCCCCe
Q 025857 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSG-DRRVGSIIEVSTPQELQQLQPADGQAEN 135 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~-~~~e~~~~lg~i~~i~pl~i~~g~~~~~~-g~~va~~~~I~~~e~le~a~~~~~~~~~ 135 (247)
.|++-+.-|++-|+|.|-..= .+++.++++.+. +... +..+.++..|++++.++.+.+.....|-
T Consensus 173 kD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~-------------l~~~~~~~~~iiaKIEt~eav~nldeIl~~~Dg 239 (470)
T PRK09206 173 KDKQDLIFGCEQGVDFVAASFIRKRSDVLEIREH-------------LKAHGGENIQIISKIENQEGLNNFDEILEASDG 239 (470)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHH-------------HHHcCCCCceEEEEECCHHHHHhHHHHHHhCCE
Confidence 468889999999999654320 123333332221 1122 2456789999999999988777777888
Q ss_pred EEEecCC-Ceeechhhhhhc-------ccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC----
Q 025857 136 IVIDLPD-WQVIPAENIVAS-------FQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (247)
Q Consensus 136 vVv~~~D-WtiIPlENlIA~-------~q~~~~~lia~-----------v~~~~EA~val~~LE~G~DGVll~~~d---- 192 (247)
++|-..| .-=+|.|.+.+. ....+.-+|.. ..+-.|+--.+.+..-|+|+|+|..+.
T Consensus 240 ImVaRGDLgvelg~e~vp~~qk~ii~~~~~~gkpvI~ATqmLeSM~~np~PTRAEvsDVanav~dG~DavMLS~ETA~G~ 319 (470)
T PRK09206 240 IMVARGDLGVEIPVEEVIFAQKMMIEKCNRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGK 319 (470)
T ss_pred EEECcchhhhhcCHHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEEechhcCCC
Confidence 7776554 334667666542 22222223331 236677888888999999999997665
Q ss_pred --HHHHHHHHHhhcc
Q 025857 193 --VKAVLALKEYFDG 205 (247)
Q Consensus 193 --~~ev~~l~~~~~~ 205 (247)
.+.|+-+.+++.+
T Consensus 320 yPveaV~~m~~I~~~ 334 (470)
T PRK09206 320 YPLEAVSIMATICER 334 (470)
T ss_pred CHHHHHHHHHHHHHH
Confidence 4566666666653
No 208
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=40.92 E-value=37 Score=32.07 Aligned_cols=44 Identities=30% Similarity=0.395 Sum_probs=29.5
Q ss_pred hhhhhhcccCCCceEE--EEcCCHHHHHHHHHHhhcccCeEEEec-----CCHHHHH
Q 025857 148 AENIVASFQGSGKTVF--AISKTPSEAQIFLEALEQGLGGIVLKV-----EDVKAVL 197 (247)
Q Consensus 148 lENlIA~~q~~~~~li--a~v~~~~EA~val~~LE~G~DGVll~~-----~d~~ev~ 197 (247)
++.|+.. .+..|+ |.+.+++||.. ++|.|+|||++.+ +||.+..
T Consensus 181 l~~i~e~---~~vpVivdAGIgt~sDa~~---AmElGaDgVL~nSaIakA~dP~~mA 231 (267)
T CHL00162 181 LQIIIEN---AKIPVIIDAGIGTPSEASQ---AMELGASGVLLNTAVAQAKNPEQMA 231 (267)
T ss_pred HHHHHHc---CCCcEEEeCCcCCHHHHHH---HHHcCCCEEeecceeecCCCHHHHH
Confidence 4555654 334444 45579998865 5789999999865 6775443
No 209
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=40.80 E-value=1.2e+02 Score=27.66 Aligned_cols=76 Identities=16% Similarity=0.117 Sum_probs=49.8
Q ss_pred ecChhhHhhhccccCCCCeEEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHH
Q 025857 117 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAV 196 (247)
Q Consensus 117 I~~~e~le~a~~~~~~~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev 196 (247)
..++.+...+.. .+.- |+-..|+ ++-.++..--.+..++-+..+..+......+|..|+..++..|.+.+++
T Consensus 7 ~~~~~~~~~~~~---~~~~-v~~~~~~----~~~~~~~~~p~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~~P~~~~~l 78 (322)
T TIGR03815 7 APDPEAARRAWA---RAPL-VLVDADM----AEACAAAGLPRRRRVVLVGGGEPGGALWRAAAAVGAEHVAVLPEAEGWL 78 (322)
T ss_pred ccCchhhhhccc---cCCe-EEECchh----hhHHHhccCCCCCCEEEEeCCCCCHHHHHHHHHhChhheeeCCCCHHHH
Confidence 344555544442 2334 5455555 4555554333344577777777788899999999999999999998875
Q ss_pred HHHH
Q 025857 197 LALK 200 (247)
Q Consensus 197 ~~l~ 200 (247)
.++-
T Consensus 79 ~~~l 82 (322)
T TIGR03815 79 VELL 82 (322)
T ss_pred HHHH
Confidence 5443
No 210
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=40.70 E-value=1.2e+02 Score=24.76 Aligned_cols=64 Identities=14% Similarity=0.219 Sum_probs=37.2
Q ss_pred CCCeEEEecC--CCeeechhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 025857 132 QAENIVIDLP--DWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (247)
Q Consensus 132 ~~~~vVv~~~--DWtiIPlENlIA~~q~-~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l 199 (247)
..+.++++.. +..-+. ++..++. .+..++..... .+......+++.|+|+++.+|-++.++...
T Consensus 46 ~~dlvild~~l~~~~g~~---~~~~lr~~~~~~ii~l~~~-~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~ 112 (221)
T PRK10766 46 HVDLILLDINLPGEDGLM---LTRELRSRSTVGIILVTGR-TDSIDRIVGLEMGADDYVTKPLELRELLVR 112 (221)
T ss_pred CCCEEEEeCCCCCCCHHH---HHHHHHhCCCCCEEEEECC-CcHHHHHHHHHcCCCcEEeCCCCHHHHHHH
Confidence 4677776643 222222 2333222 23344444432 344456688999999999999998876543
No 211
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=40.62 E-value=66 Score=29.85 Aligned_cols=140 Identities=14% Similarity=0.127 Sum_probs=75.4
Q ss_pred chhHHHHHHHhCCcEEEecC------cchHHHhhccceeE------EeeeeecCCceecCCCCeEEEEEEecChhhHhhh
Q 025857 59 SKQVMTAAVERGWNTFVFLS------ENQQLAIDWSTIAL------LDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQL 126 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~~------~~~e~~~~lg~i~~------i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a 126 (247)
+.+.+..|++.|++.++++. ++.++.+++-.+.. -.-+-..+| .++...+.-...+++|+....
T Consensus 86 ~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg----~ed~~~g~~~~~t~~eea~~f 161 (282)
T TIGR01859 86 SYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGG----IEDGVDEKEAELADPDEAEQF 161 (282)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcC----ccccccccccccCCHHHHHHH
Confidence 68999999999999999853 12333333322211 111111111 111111101235688877666
Q ss_pred ccccCCCCeEEEe-------cCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC-HHHHHH
Q 025857 127 QPADGQAENIVID-------LPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED-VKAVLA 198 (247)
Q Consensus 127 ~~~~~~~~~vVv~-------~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d-~~ev~~ 198 (247)
.... .+||+.+. ++....+.+|.|-.--+..+.-|++.=.|--...-+-.+.+.|+++|=+.|+= ..-...
T Consensus 162 ~~~t-gvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~kiNv~T~l~~a~~~~ 240 (282)
T TIGR01859 162 VKET-GVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKINIDTDCRIAFTAA 240 (282)
T ss_pred HHHH-CcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEEEECcHHHHHHHHH
Confidence 6422 57887753 33345567776633322334456665533333334666788899999999984 233334
Q ss_pred HHHhh
Q 025857 199 LKEYF 203 (247)
Q Consensus 199 l~~~~ 203 (247)
+++++
T Consensus 241 ~~~~~ 245 (282)
T TIGR01859 241 IRKVL 245 (282)
T ss_pred HHHHH
Confidence 45544
No 212
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=40.58 E-value=53 Score=31.93 Aligned_cols=56 Identities=16% Similarity=0.090 Sum_probs=32.3
Q ss_pred CCCCeEEEecCCCe------eechhhhhhcccCCCceEEE-EcCCHHHHHHHHHHhhcccCeEEEe
Q 025857 131 GQAENIVIDLPDWQ------VIPAENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLK 189 (247)
Q Consensus 131 ~~~~~vVv~~~DWt------iIPlENlIA~~q~~~~~lia-~v~~~~EA~val~~LE~G~DGVll~ 189 (247)
..++.++++.+-.. --+.+||....+..+..||+ .+.+.++|+-+ ++.|+|||+.-
T Consensus 154 AGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~G~V~t~e~A~~~---~~aGaDgV~~G 216 (369)
T TIGR01304 154 AGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIAGGVNDYTTALHL---MRTGAAGVIVG 216 (369)
T ss_pred CCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHH---HHcCCCEEEEC
Confidence 45788887632100 01223444444444567776 56676666555 46899999844
No 213
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=40.40 E-value=38 Score=29.40 Aligned_cols=30 Identities=13% Similarity=0.272 Sum_probs=25.6
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEec
Q 025857 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (247)
Q Consensus 48 ~~~K~vWiW~-~~KevvT~ALEsG~d~~v~~ 77 (247)
.+-+.|++|| .+++.+...++.|+|+|+..
T Consensus 199 ~~G~~v~~wTvn~~~~~~~l~~~GVdgi~TD 229 (233)
T cd08582 199 DAGLKLNVWTVDDAEDAKRLIELGVDSITTN 229 (233)
T ss_pred HCCCEEEEEeCCCHHHHHHHHHCCCCEEEcC
Confidence 3577899999 56999999999999998864
No 214
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=40.40 E-value=93 Score=26.89 Aligned_cols=78 Identities=13% Similarity=0.044 Sum_probs=44.3
Q ss_pred EEEEecChhhHhhhccc--cCCCCeEEEecCCCeeechhhhhhcccCC--CceEE-EEcCCHHHHHHHHHHhhcccCeEE
Q 025857 113 SIIEVSTPQELQQLQPA--DGQAENIVIDLPDWQVIPAENIVASFQGS--GKTVF-AISKTPSEAQIFLEALEQGLGGIV 187 (247)
Q Consensus 113 ~~~~I~~~e~le~a~~~--~~~~~~vVv~~~DWtiIPlENlIA~~q~~--~~~li-a~v~~~~EA~val~~LE~G~DGVl 187 (247)
.++...++++.....+. ......+-+..++..- +.+++.+... ...+- ..+-+.++++.| ++.|+|||+
T Consensus 16 ~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~---~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A---~~~gAdgv~ 89 (187)
T PRK07455 16 AVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQP---AELISQLREKLPECIIGTGTILTLEDLEEA---IAAGAQFCF 89 (187)
T ss_pred EEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCH---HHHHHHHHHhCCCcEEeEEEEEcHHHHHHH---HHcCCCEEE
Confidence 34445555655544332 2346666666666643 3344333221 22222 244566888887 457999999
Q ss_pred EecCCHHHH
Q 025857 188 LKVEDVKAV 196 (247)
Q Consensus 188 l~~~d~~ev 196 (247)
+.-.|++.+
T Consensus 90 ~p~~~~~~~ 98 (187)
T PRK07455 90 TPHVDPELI 98 (187)
T ss_pred CCCCCHHHH
Confidence 888887654
No 215
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=40.37 E-value=1.5e+02 Score=25.27 Aligned_cols=66 Identities=14% Similarity=0.020 Sum_probs=39.2
Q ss_pred CCCeEEEecCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q--~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l 199 (247)
..+.+|++..-+..=-+ .++..+. ..+..++.... .++......+++.|++|.+.+|-++.++.+.
T Consensus 50 ~pdlvllD~~mp~~~gl-e~~~~l~~~~~~~~iivls~-~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~ 117 (225)
T PRK10046 50 KPGLILLDNYLPDGRGI-NLLHELVQAHYPGDVVFTTA-ASDMETVSEAVRCGVFDYLIKPIAYERLGQT 117 (225)
T ss_pred CCCEEEEeCCCCCCcHH-HHHHHHHhcCCCCCEEEEEc-CCCHHHHHHHHHcCccEEEECCcCHHHHHHH
Confidence 45777776543322122 2233222 22344555443 3445567788999999999999998877543
No 216
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=39.69 E-value=1.5e+02 Score=24.20 Aligned_cols=68 Identities=19% Similarity=0.156 Sum_probs=38.4
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~-~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
..+.++++..-...=.+ .++..+.. .+..++..... .+......+++.|+|+.+.+|-++.++.+..+
T Consensus 45 ~~dlvild~~l~~~~g~-~~~~~lr~~~~~pvi~lt~~-~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~ 113 (225)
T PRK10529 45 KPDLIILDLGLPDGDGI-EFIRDLRQWSAIPVIVLSAR-SEESDKIAALDAGADDYLSKPFGIGELQARLR 113 (225)
T ss_pred CCCEEEEeCCCCCCCHH-HHHHHHHcCCCCCEEEEECC-CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Confidence 45777776443222111 22222221 23344444432 33455678899999999999999887755443
No 217
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=39.51 E-value=37 Score=29.17 Aligned_cols=29 Identities=21% Similarity=0.461 Sum_probs=24.7
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEe
Q 025857 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVF 76 (247)
Q Consensus 48 ~~~K~vWiW~-~~KevvT~ALEsG~d~~v~ 76 (247)
.+-+.|++|+ .+++.+..+++.|+|+|+.
T Consensus 188 ~~G~~v~~wtvn~~~~~~~~~~~Gvd~i~T 217 (220)
T cd08579 188 QNGKKVYVWTVNDPDDMQRYLAMGVDGIIT 217 (220)
T ss_pred HCCCEEEEEcCCCHHHHHHHHHcCCCEEeC
Confidence 4567899999 5799999999999999875
No 218
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=39.44 E-value=1e+02 Score=26.67 Aligned_cols=59 Identities=17% Similarity=0.226 Sum_probs=46.7
Q ss_pred eec-hhhhhhcccCCCceEEEEcCCHHHHHHHHHHhh-cc-cCeEEEecCCHHHHHHHHHhhc
Q 025857 145 VIP-AENIVASFQGSGKTVFAISKTPSEAQIFLEALE-QG-LGGIVLKVEDVKAVLALKEYFD 204 (247)
Q Consensus 145 iIP-lENlIA~~q~~~~~lia~v~~~~EA~val~~LE-~G-~DGVll~~~d~~ev~~l~~~~~ 204 (247)
.|| ||.+++.+.+ +..+.-+.++.+.++..+..++ .| .+-|++.+-|+..++.+++...
T Consensus 78 ~iPtL~evl~~~~~-~~~l~iEiK~~~~~~~~~~~l~~~~~~~~v~i~SF~~~~l~~~~~~~p 139 (226)
T cd08568 78 LIPTLEEVFRALPN-DAIINVEIKDIDAVEPVLEIVEKFNALDRVIFSSFNHDALRELRKLDP 139 (226)
T ss_pred cCCCHHHHHHhcCC-CcEEEEEECCccHHHHHHHHHHHcCCCCcEEEEECCHHHHHHHHHhCC
Confidence 466 8999998855 4578999998777777777776 35 5789999999999988888643
No 219
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=38.66 E-value=1.5e+02 Score=23.83 Aligned_cols=68 Identities=12% Similarity=0.055 Sum_probs=38.9
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~--~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
..+.++++..-...-.+ .++..++. .+..++... +..+......+++.|+++++.+|.+..++.+...
T Consensus 44 ~~d~vild~~~~~~~~~-~~~~~i~~~~~~~~ii~lt-~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~ 113 (221)
T PRK15479 44 MYALAVLDINMPGMDGL-EVLQRLRKRGQTLPVLLLT-ARSAVADRVKGLNVGADDYLPKPFELEELDARLR 113 (221)
T ss_pred CCCEEEEeCCCCCCcHH-HHHHHHHhcCCCCCEEEEE-CCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHH
Confidence 45677766432222222 22333222 233445443 3344455677889999999999999987765443
No 220
>PRK07695 transcriptional regulator TenI; Provisional
Probab=38.59 E-value=2e+02 Score=24.55 Aligned_cols=40 Identities=18% Similarity=0.089 Sum_probs=27.5
Q ss_pred echhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 025857 146 IPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 146 IPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
.|++.+...+ .+..|.+.+.+.++|+ .+.+.|+|-+++.+
T Consensus 84 ~~~~~~r~~~--~~~~ig~s~~s~e~a~---~a~~~Gadyi~~g~ 123 (201)
T PRK07695 84 FSVRSVREKF--PYLHVGYSVHSLEEAI---QAEKNGADYVVYGH 123 (201)
T ss_pred CCHHHHHHhC--CCCEEEEeCCCHHHHH---HHHHcCCCEEEECC
Confidence 4566555543 2446777788988865 45688999998754
No 221
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=38.54 E-value=2.7e+02 Score=24.34 Aligned_cols=128 Identities=13% Similarity=0.039 Sum_probs=61.6
Q ss_pred CchhHHHHHHHhCCcEEEecCc---chHHH----hhccceeEEeeeeecCCceecCCCCeEEE--EEEecChhhHhhhcc
Q 025857 58 ESKQVMTAAVERGWNTFVFLSE---NQQLA----IDWSTIALLDPLFIKEGEVYDSGDRRVGS--IIEVSTPQELQQLQP 128 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~~---~~e~~----~~lg~i~~i~pl~i~~g~~~~~~g~~va~--~~~I~~~e~le~a~~ 128 (247)
.+-+-+...++.|++++++... +.+.. +++++=+++-++-+..+... +.++.+ ..+-++.+..+.+..
T Consensus 81 ~s~~d~~~~l~~G~~~v~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~---~~~v~~~~~~~~~~~~~~~~~~~ 157 (243)
T cd04731 81 RSLEDARRLLRAGADKVSINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDG---GYEVYTHGGRKPTGLDAVEWAKE 157 (243)
T ss_pred CCHHHHHHHHHcCCceEEECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCC---ceEEEEcCCceecCCCHHHHHHH
Confidence 4678888899999999998542 23343 34432122222221111000 011111 111122233333322
Q ss_pred c-cCCCCeEEEecCCC----eeechhhhhhccc-CCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 129 A-DGQAENIVIDLPDW----QVIPAENIVASFQ-GSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 129 ~-~~~~~~vVv~~~DW----tiIPlENlIA~~q-~~~~~lia~--v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
+ ...++++++...+- +-+.+|- ++++. ..+..+++. ++++++++-+++. .|+|||++..-
T Consensus 158 l~~~G~d~i~v~~i~~~g~~~g~~~~~-i~~i~~~~~~pvia~GGi~~~~di~~~l~~--~g~dgv~vg~a 225 (243)
T cd04731 158 VEELGAGEILLTSMDRDGTKKGYDLEL-IRAVSSAVNIPVIASGGAGKPEHFVEAFEE--GGADAALAASI 225 (243)
T ss_pred HHHCCCCEEEEeccCCCCCCCCCCHHH-HHHHHhhCCCCEEEeCCCCCHHHHHHHHHh--CCCCEEEEeHH
Confidence 2 23578888855431 1223332 33322 234455554 4788887765442 49999999543
No 222
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=38.30 E-value=96 Score=31.10 Aligned_cols=73 Identities=15% Similarity=0.336 Sum_probs=41.7
Q ss_pred EEEEEEecChhhHhhhcccc-CCCCeEEEecC-CCeeechhhhhhcccCC--CceEEE-EcCCHHHHHHHHHHhhcccCe
Q 025857 111 VGSIIEVSTPQELQQLQPAD-GQAENIVIDLP-DWQVIPAENIVASFQGS--GKTVFA-ISKTPSEAQIFLEALEQGLGG 185 (247)
Q Consensus 111 va~~~~I~~~e~le~a~~~~-~~~~~vVv~~~-DWtiIPlENlIA~~q~~--~~~lia-~v~~~~EA~val~~LE~G~DG 185 (247)
||+.+.+ ++++++.+..+. ..++.++|+.. +-+.-.+| .|..+... +..|++ .+.|.++|+. ..+.|+|+
T Consensus 232 Vgaavg~-~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~-~i~~ik~~~~~~~v~aG~V~t~~~a~~---~~~aGad~ 306 (495)
T PTZ00314 232 VGAAIST-RPEDIERAAALIEAGVDVLVVDSSQGNSIYQID-MIKKLKSNYPHVDIIAGNVVTADQAKN---LIDAGADG 306 (495)
T ss_pred EEEEECC-CHHHHHHHHHHHHCCCCEEEEecCCCCchHHHH-HHHHHHhhCCCceEEECCcCCHHHHHH---HHHcCCCE
Confidence 4444444 455566664444 36888888863 32332233 34444332 345555 4566666665 45789999
Q ss_pred EEE
Q 025857 186 IVL 188 (247)
Q Consensus 186 Vll 188 (247)
|.+
T Consensus 307 I~v 309 (495)
T PTZ00314 307 LRI 309 (495)
T ss_pred EEE
Confidence 975
No 223
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=38.16 E-value=1.1e+02 Score=29.39 Aligned_cols=33 Identities=30% Similarity=0.253 Sum_probs=23.4
Q ss_pred ceEEEEcCCH----HHHHHHHHHhhcccCeEEEecCC
Q 025857 160 KTVFAISKTP----SEAQIFLEALEQGLGGIVLKVED 192 (247)
Q Consensus 160 ~~lia~v~~~----~EA~val~~LE~G~DGVll~~~d 192 (247)
.+++.++.+. +||..++..+-+|+|||.|+.-+
T Consensus 201 ~~i~vevdt~~~~~~~Al~~~~~~~~~~d~I~LDn~~ 237 (343)
T PRK08662 201 VPRIALVDTFKDEREEALRAAEALGDRLDGVRLDTPS 237 (343)
T ss_pred CCEEEEEEeCCccHHHHHHHHHHhCCcCCEEEcCCCC
Confidence 3688888887 55555544444499999999944
No 224
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=37.82 E-value=73 Score=30.02 Aligned_cols=49 Identities=6% Similarity=0.088 Sum_probs=32.6
Q ss_pred hhhhcccCCCceEEEE-cCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 025857 150 NIVASFQGSGKTVFAI-SKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (247)
Q Consensus 150 NlIA~~q~~~~~lia~-v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~ 203 (247)
.+++++++.+.++++- |++.++++.+ ++.|+|||+ ||+|+.+.++.+-.
T Consensus 236 ~~v~~~~~~G~~v~vWTVNd~~~~~~l---~~~GVDgIi--TD~P~~l~~~~~~~ 285 (315)
T cd08609 236 LEIKELRKDNVSVNLWVVNEPWLFSLL---WCSGVSSVT--TNACQLLKDMSKPI 285 (315)
T ss_pred HHHHHHHHCCCEEEEECCCCHHHHHHH---HhcCCCEEE--cCCHHHHHHhhhhh
Confidence 3566666666666554 4667666654 568999988 88898666555433
No 225
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=37.64 E-value=46 Score=29.96 Aligned_cols=46 Identities=17% Similarity=0.333 Sum_probs=32.0
Q ss_pred hhhhhcccCCCceEEEE-c--CCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 025857 149 ENIVASFQGSGKTVFAI-S--KTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (247)
Q Consensus 149 ENlIA~~q~~~~~lia~-v--~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l 199 (247)
+-+|..++..+-.+++- + ++.++++.+ ++.|+|||+ ||.|+.+.++
T Consensus 235 ~~~v~~~~~~Gl~v~~WTv~~n~~~~~~~l---~~~GVdgIi--TD~p~~~~~~ 283 (286)
T cd08606 235 PRLIQVVKRSGLVCVSYGVLNNDPENAKTQ---VKAGVDAVI--VDSVLAIRRG 283 (286)
T ss_pred hHHHHHHHHCCcEEEEECCccCCHHHHHHH---HHcCCCEEE--ECCHHHHHHH
Confidence 35677777767676664 4 777777654 467999977 8888866543
No 226
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=37.53 E-value=29 Score=33.60 Aligned_cols=76 Identities=13% Similarity=0.149 Sum_probs=43.1
Q ss_pred CeEEEEEEecChhhHhhhcccc-CCCCeEEEecC-CCe---eechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhccc
Q 025857 109 RRVGSIIEVSTPQELQQLQPAD-GQAENIVIDLP-DWQ---VIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGL 183 (247)
Q Consensus 109 ~~va~~~~I~~~e~le~a~~~~-~~~~~vVv~~~-DWt---iIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~ 183 (247)
..+++-+-+.+. +.+++..+. ..+|.++|+.. +.. +=-+++|-..+- ++.-.+.|..-++.+..-++.|+
T Consensus 97 l~V~aavg~~~~-~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~----~~~viaGNV~T~e~a~~L~~aGa 171 (352)
T PF00478_consen 97 LLVAAAVGTRDD-DFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFP----DVPVIAGNVVTYEGAKDLIDAGA 171 (352)
T ss_dssp BCEEEEEESSTC-HHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHST----TSEEEEEEE-SHHHHHHHHHTT-
T ss_pred ceEEEEecCCHH-HHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCC----CceEEecccCCHHHHHHHHHcCC
Confidence 456666666542 345554333 57899999865 333 333444444432 33444556666667777888999
Q ss_pred CeEEEe
Q 025857 184 GGIVLK 189 (247)
Q Consensus 184 DGVll~ 189 (247)
|+|-+-
T Consensus 172 d~vkVG 177 (352)
T PF00478_consen 172 DAVKVG 177 (352)
T ss_dssp SEEEES
T ss_pred CEEEEe
Confidence 999876
No 227
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=37.47 E-value=1.2e+02 Score=27.31 Aligned_cols=59 Identities=24% Similarity=0.253 Sum_probs=39.1
Q ss_pred eeechhhhhhc-------ccC-CCceEEEE-----c--CCHHHH-HHHHHHhhcccCeEEEecC-CHHHHHHHHHh
Q 025857 144 QVIPAENIVAS-------FQG-SGKTVFAI-----S--KTPSEA-QIFLEALEQGLGGIVLKVE-DVKAVLALKEY 202 (247)
Q Consensus 144 tiIPlENlIA~-------~q~-~~~~lia~-----v--~~~~EA-~val~~LE~G~DGVll~~~-d~~ev~~l~~~ 202 (247)
..+|.|..++. .++ .+.-|+|. + ...+|| +-+-...|.|+|+|.+.+- ++++++++.+.
T Consensus 119 ~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~~~~~~~~~~~~ 194 (243)
T cd00377 119 VLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGLKDPEEIRAFAEA 194 (243)
T ss_pred eecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHhc
Confidence 56777765543 233 35567777 5 466666 4566678999999999765 77777666553
No 228
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=37.43 E-value=2.2e+02 Score=25.42 Aligned_cols=102 Identities=15% Similarity=0.140 Sum_probs=54.9
Q ss_pred eeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeEEEecCCCe---eechhhhhhcc-cCCCceEEE--EcCCH
Q 025857 96 LFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQ---VIPAENIVASF-QGSGKTVFA--ISKTP 169 (247)
Q Consensus 96 l~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vVv~~~DWt---iIPlENlIA~~-q~~~~~lia--~v~~~ 169 (247)
+.+.+|..+++..... .....++.++...... ..++.+.+...+=. -=+--.+|.++ +..+..+++ .+++.
T Consensus 10 iD~~~G~~V~~~~~~~--~~~~~dp~~~a~~~~~-~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~ 86 (254)
T TIGR00735 10 LDVRDGRVVKGVQFLN--LRDAGDPVELAQRYDE-EGADELVFLDITASSEGRTTMIDVVERTAETVFIPLTVGGGIKSI 86 (254)
T ss_pred EEeECCEEEEeEeecC--ceECCCHHHHHHHHHH-cCCCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEEECCCCCH
Confidence 4555666654432111 2233467665555544 34565555543211 00111122222 122233444 78999
Q ss_pred HHHHHHHHHhhcccCeEEEecC---CHHHHHHHHHhh
Q 025857 170 SEAQIFLEALEQGLGGIVLKVE---DVKAVLALKEYF 203 (247)
Q Consensus 170 ~EA~val~~LE~G~DGVll~~~---d~~ev~~l~~~~ 203 (247)
++++.++. .|+++|++.+. ||+.++++.+.+
T Consensus 87 ~d~~~~~~---~Ga~~vivgt~~~~~p~~~~~~~~~~ 120 (254)
T TIGR00735 87 EDVDKLLR---AGADKVSINTAAVKNPELIYELADRF 120 (254)
T ss_pred HHHHHHHH---cCCCEEEEChhHhhChHHHHHHHHHc
Confidence 99998877 49999999884 677666666554
No 229
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=37.25 E-value=3e+02 Score=24.47 Aligned_cols=107 Identities=13% Similarity=0.066 Sum_probs=60.7
Q ss_pred eEEeeeeecCCceecC-CCCeEEEEEEecChhhHhhhccccCCCCeEEEecCC-----Ceeec-hhhhhhcccCCCceEE
Q 025857 91 ALLDPLFIKEGEVYDS-GDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPD-----WQVIP-AENIVASFQGSGKTVF 163 (247)
Q Consensus 91 ~~i~pl~i~~g~~~~~-~g~~va~~~~I~~~e~le~a~~~~~~~~~vVv~~~D-----WtiIP-lENlIA~~q~~~~~li 163 (247)
.+|..+.+.+|..++. +|+ ..-+....||.++-..... ..++.+.+-..| ...++ ++.|.... .-+..+=
T Consensus 5 ~iIP~idl~~G~~V~~~~g~-~~~~~~~~dp~~~a~~~~~-~g~~~l~ivDLd~~~g~~~n~~~i~~i~~~~-~~pv~vg 81 (241)
T PRK14024 5 TLLPAVDVVDGQAVRLVQGE-AGSETSYGSPLDAALAWQR-DGAEWIHLVDLDAAFGRGSNRELLAEVVGKL-DVKVELS 81 (241)
T ss_pred EEEEEEEeECCEEEEeeccc-ccCceECCCHHHHHHHHHH-CCCCEEEEEeccccCCCCccHHHHHHHHHHc-CCCEEEc
Confidence 3444466677776644 232 2233334477766555444 345554444332 11122 22333332 2344566
Q ss_pred EEcCCHHHHHHHHHHhhcccCeEEEec---CCHHHHHHHHHhh
Q 025857 164 AISKTPSEAQIFLEALEQGLGGIVLKV---EDVKAVLALKEYF 203 (247)
Q Consensus 164 a~v~~~~EA~val~~LE~G~DGVll~~---~d~~ev~~l~~~~ 203 (247)
..++|.|+++.+|. .|+|-|++.+ +||+-+.++.+.+
T Consensus 82 GGirs~edv~~~l~---~Ga~kvviGs~~l~~p~l~~~i~~~~ 121 (241)
T PRK14024 82 GGIRDDESLEAALA---TGCARVNIGTAALENPEWCARVIAEH 121 (241)
T ss_pred CCCCCHHHHHHHHH---CCCCEEEECchHhCCHHHHHHHHHHh
Confidence 68899999998865 6999999988 4677666665543
No 230
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=37.14 E-value=1.1e+02 Score=26.15 Aligned_cols=81 Identities=20% Similarity=0.192 Sum_probs=46.1
Q ss_pred EEEEecChhhHhhhccc--cCCCCeEEEecCCCeeechhhhhhcccCCCceEEE---EcCCHHHHHHHHHHhhcccCeEE
Q 025857 113 SIIEVSTPQELQQLQPA--DGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFA---ISKTPSEAQIFLEALEQGLGGIV 187 (247)
Q Consensus 113 ~~~~I~~~e~le~a~~~--~~~~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia---~v~~~~EA~val~~LE~G~DGVl 187 (247)
..+...++++.....+. ....+.+-+..++..-+| .+..+...-..+.. .+-+.++++. +++.|+|||+
T Consensus 8 ~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~---~i~~l~~~~~~~~iGag~v~~~~~~~~---a~~~Ga~~i~ 81 (190)
T cd00452 8 AVLRGDDAEDALALAEALIEGGIRAIEITLRTPGALE---AIRALRKEFPEALIGAGTVLTPEQADA---AIAAGAQFIV 81 (190)
T ss_pred EEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHH---HHHHHHHHCCCCEEEEEeCCCHHHHHH---HHHcCCCEEE
Confidence 44555566665544332 245777788777665444 44443332212222 3456666655 4568999999
Q ss_pred EecCCHHHHHHH
Q 025857 188 LKVEDVKAVLAL 199 (247)
Q Consensus 188 l~~~d~~ev~~l 199 (247)
+...|++-+...
T Consensus 82 ~p~~~~~~~~~~ 93 (190)
T cd00452 82 SPGLDPEVVKAA 93 (190)
T ss_pred cCCCCHHHHHHH
Confidence 887777644433
No 231
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=37.06 E-value=55 Score=32.90 Aligned_cols=72 Identities=17% Similarity=0.189 Sum_probs=56.5
Q ss_pred ChhhHhhhccccCCCCeEEEecC--CCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 025857 119 TPQELQQLQPADGQAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (247)
Q Consensus 119 ~~e~le~a~~~~~~~~~vVv~~~--DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ 194 (247)
|.++++.+.. ...||+-+.|- -=.|+-+-++++.. +.+..+++-..+.+--+-.=++++. +|||++.+.|.+
T Consensus 176 D~~di~f~~~--~~vD~ia~SFV~~~~di~~~r~~l~~~-~~~~~iiakIEt~~av~nldeI~~~-~DgImIargDLg 249 (480)
T cd00288 176 DKADLRFGVE--QGVDMIFASFVRKASDVLEIREVLGEK-GKDIKIIAKIENQEGVNNFDEILEA-SDGIMVARGDLG 249 (480)
T ss_pred HHHHHHHHHH--cCCCEEEECCCCCHHHHHHHHHHHHhc-CCCceEEEEECCHHHHHhHHHHHHh-cCEEEECcchhh
Confidence 4455555543 35899888873 44578888888874 5577899999999999999999999 999999999843
No 232
>cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti
Probab=36.76 E-value=56 Score=31.42 Aligned_cols=45 Identities=11% Similarity=0.043 Sum_probs=31.9
Q ss_pred CCcEEEEEe-CchhHHHHHHHhCCcEEEecCcchHHHhhc-cceeEEee
Q 025857 49 KPKRVWIWT-ESKQVMTAAVERGWNTFVFLSENQQLAIDW-STIALLDP 95 (247)
Q Consensus 49 ~~K~vWiW~-~~KevvT~ALEsG~d~~v~~~~~~e~~~~l-g~i~~i~p 95 (247)
....|++|| .+++.+...++.|+|+++... .+++.++ ..+-.++|
T Consensus 222 ~Gl~V~vWTVN~~~~~~~l~~~GVdgIiTD~--P~~l~~l~~~~~~~~~ 268 (351)
T cd08608 222 SNLSVNLYTVNEPWLYSLLWCSGVPSVTSDA--SHVLRKVPFPLWLMPP 268 (351)
T ss_pred CCCEEEEEecCCHHHHHHHHHCCCCEEEECC--HHHHHHhhhhhhhCCh
Confidence 466799999 568899999999999999742 4455443 33344444
No 233
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=36.41 E-value=62 Score=30.47 Aligned_cols=65 Identities=15% Similarity=0.182 Sum_probs=36.3
Q ss_pred hhhHhhhcccc-CCCCeEEEecC-CCeeechhhhhhcccCCC--ceEEE-EcCCHHHHHHHHHHhhcccCeEEE
Q 025857 120 PQELQQLQPAD-GQAENIVIDLP-DWQVIPAENIVASFQGSG--KTVFA-ISKTPSEAQIFLEALEQGLGGIVL 188 (247)
Q Consensus 120 ~e~le~a~~~~-~~~~~vVv~~~-DWtiIPlENlIA~~q~~~--~~lia-~v~~~~EA~val~~LE~G~DGVll 188 (247)
+++.+.+.... ...+.+++++. +.. -.+.++|..+.... ..|++ .+.+.++|+. +++.|+|+|++
T Consensus 93 ~~~~~~~~~l~eagv~~I~vd~~~G~~-~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~---l~~aGaD~I~v 162 (325)
T cd00381 93 EDDKERAEALVEAGVDVIVIDSAHGHS-VYVIEMIKFIKKKYPNVDVIAGNVVTAEAARD---LIDAGADGVKV 162 (325)
T ss_pred hhHHHHHHHHHhcCCCEEEEECCCCCc-HHHHHHHHHHHHHCCCceEEECCCCCHHHHHH---HHhcCCCEEEE
Confidence 34444443332 35778777764 222 22344555554432 45554 5566666655 45789999997
No 234
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=36.24 E-value=62 Score=31.64 Aligned_cols=116 Identities=18% Similarity=0.211 Sum_probs=59.0
Q ss_pred chhHHHHHHHhCCcEEEecCcchHHHhhccceeE--EeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeE
Q 025857 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIAL--LDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~~~~~e~~~~lg~i~~--i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~v 136 (247)
.+++|.-|=..|+-++++.=+..-+.+..+.+.- ..| .+-.+.+-++.. ...+.-.+...+... ..+..+.
T Consensus 136 t~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D~~n~f~lp---~~l~lknfe~~~-~~~v~~~~~sg~~~~--~~~~id~- 208 (363)
T KOG0538|consen 136 TEQLVKRAEKAGFKALVLTVDTPRLGRRESDIKNKFSLP---KNLTLKNFEGLK-LTEVEEAGDSGLAAY--VSSQIDP- 208 (363)
T ss_pred HHHHHHHHHHcCceEEEEEeccccccCchhhhhhcccCC---cccccccccccc-cccCCcccchhhhhh--hhcCCCC-
Confidence 6899999999999998864332334444444332 222 111111111110 000000001111111 1112222
Q ss_pred EEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 137 VIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 137 Vv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
..+|+=|+.=.=+-.+ --|+..+-+.|||+.| .|+|++||+++.-
T Consensus 209 ---Sl~W~Di~wLr~~T~L----PIvvKGilt~eDA~~A---ve~G~~GIIVSNH 253 (363)
T KOG0538|consen 209 ---SLSWKDIKWLRSITKL----PIVVKGVLTGEDARKA---VEAGVAGIIVSNH 253 (363)
T ss_pred ---CCChhhhHHHHhcCcC----CeEEEeecccHHHHHH---HHhCCceEEEeCC
Confidence 3489887753322221 2467788899999876 5899999999754
No 235
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=36.04 E-value=45 Score=29.80 Aligned_cols=28 Identities=7% Similarity=0.001 Sum_probs=23.8
Q ss_pred CCcEEEEEe-CchhHHHHHHHhCCcEEEe
Q 025857 49 KPKRVWIWT-ESKQVMTAAVERGWNTFVF 76 (247)
Q Consensus 49 ~~K~vWiW~-~~KevvT~ALEsG~d~~v~ 76 (247)
..+.|++|| .+++.+...++.|+|+|+.
T Consensus 222 ~g~~v~~WTVn~~~~~~~l~~~GVdgIiT 250 (252)
T cd08574 222 ANISVNLYVVNEPWLYSLLWCSGVQSVTT 250 (252)
T ss_pred CCCEEEEEccCCHHHHHHHHHcCCCEEec
Confidence 567799999 5688999999999999875
No 236
>PRK13435 response regulator; Provisional
Probab=36.01 E-value=2e+02 Score=22.07 Aligned_cols=66 Identities=15% Similarity=0.211 Sum_probs=38.5
Q ss_pred CCCeEEEecC---CCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 025857 132 QAENIVIDLP---DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (247)
Q Consensus 132 ~~~~vVv~~~---DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~ 203 (247)
..+.+|++.. +..-+.+-..+.. .....++....+.+. ...++.|+++.+.+|-+..++.+.-..+
T Consensus 50 ~~dliivd~~~~~~~~~~~~~~~l~~--~~~~pii~ls~~~~~----~~~~~~ga~~~l~kp~~~~~l~~~i~~~ 118 (145)
T PRK13435 50 QPDVALVDVHLADGPTGVEVARRLSA--DGGVEVVFMTGNPER----VPHDFAGALGVIAKPYSPRGVARALSYL 118 (145)
T ss_pred CCCEEEEeeecCCCCcHHHHHHHHHh--CCCCCEEEEeCCHHH----HHHHhcCcceeEeCCCCHHHHHHHHHHH
Confidence 4566676542 2333333333332 224456666655442 3467789999999999988776644333
No 237
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=34.33 E-value=3.5e+02 Score=24.32 Aligned_cols=106 Identities=12% Similarity=0.051 Sum_probs=59.4
Q ss_pred EeeeeecCCceecCC-CCeEEEEEEecChhhHhhhccccCCCCeEEEecCCC--eeechhhhhhcccC---CCceEEEEc
Q 025857 93 LDPLFIKEGEVYDSG-DRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDW--QVIPAENIVASFQG---SGKTVFAIS 166 (247)
Q Consensus 93 i~pl~i~~g~~~~~~-g~~va~~~~I~~~e~le~a~~~~~~~~~vVv~~~DW--tiIPlENlIA~~q~---~~~~lia~v 166 (247)
|..+.+.+|..++.. |.+ .......||.++...... ..++++.|-..|= ..=|-..+|.++-. .+..+=..+
T Consensus 5 IP~iDl~~G~~Vr~~~G~~-~~~~~~~dP~~~a~~~~~-~ga~~lhivDLd~a~~~~~n~~~i~~i~~~~~~~v~vGGGI 82 (232)
T PRK13586 5 IPSIDISLGKAVKRIRGVK-GTGLILGNPIEIASKLYN-EGYTRIHVVDLDAAEGVGNNEMYIKEISKIGFDWIQVGGGI 82 (232)
T ss_pred EEEEEEECCEEEEeeecCC-CCceEcCCHHHHHHHHHH-CCCCEEEEEECCCcCCCcchHHHHHHHHhhCCCCEEEeCCc
Confidence 333556677766533 221 111123577766555444 3455544443321 01111234443322 256677788
Q ss_pred CCHHHHHHHHHHhhcccCeEEEec---CCHHHHHHHHHhh
Q 025857 167 KTPSEAQIFLEALEQGLGGIVLKV---EDVKAVLALKEYF 203 (247)
Q Consensus 167 ~~~~EA~val~~LE~G~DGVll~~---~d~~ev~~l~~~~ 203 (247)
++.++|+.+|. .|+|=|++.+ +||+-++++.+.+
T Consensus 83 rs~e~~~~~l~---~Ga~kvvigt~a~~~p~~~~~~~~~~ 119 (232)
T PRK13586 83 RDIEKAKRLLS---LDVNALVFSTIVFTNFNLFHDIVREI 119 (232)
T ss_pred CCHHHHHHHHH---CCCCEEEECchhhCCHHHHHHHHHHh
Confidence 99999988775 6999999988 5777777665554
No 238
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=34.26 E-value=56 Score=28.96 Aligned_cols=46 Identities=20% Similarity=0.389 Sum_probs=32.1
Q ss_pred CeeechhhhhhcccCCCceEEE-EcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 025857 143 WQVIPAENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (247)
Q Consensus 143 WtiIPlENlIA~~q~~~~~lia-~v~~~~EA~val~~LE~G~DGVll~~~d~~ 194 (247)
|..+. ..+++.++..+-++++ .+++.++++. .++.|+|||+ +|.|+
T Consensus 194 ~~~~~-~~~v~~~~~~g~~v~~WTvn~~~~~~~---l~~~GVdgIi--TD~p~ 240 (249)
T PRK09454 194 HKLLD-EARVAALKAAGLRILVYTVNDPARARE---LLRWGVDCIC--TDRID 240 (249)
T ss_pred cccCC-HHHHHHHHHCCCEEEEEeCCCHHHHHH---HHHcCCCEEE--eCChH
Confidence 34443 4777888887777765 4588887764 4778999977 56665
No 239
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=34.14 E-value=86 Score=27.66 Aligned_cols=44 Identities=11% Similarity=0.159 Sum_probs=31.5
Q ss_pred hhhhhcccCCCceEEEE-cCCHHHHHHHHHHhhcccCeEEEecCCHHHHH
Q 025857 149 ENIVASFQGSGKTVFAI-SKTPSEAQIFLEALEQGLGGIVLKVEDVKAVL 197 (247)
Q Consensus 149 ENlIA~~q~~~~~lia~-v~~~~EA~val~~LE~G~DGVll~~~d~~ev~ 197 (247)
..++..++..+.++++- +++.++++.++ +.|+|||+ ||.|+.+.
T Consensus 208 ~~~v~~~~~~g~~v~~wTvn~~~~~~~l~---~~Gvd~Ii--TD~p~~~~ 252 (256)
T cd08601 208 PWMVHLIHKKGLLVHPYTVNEKADMIRLI---NWGVDGMF--TNYPDRLK 252 (256)
T ss_pred HHHHHHHHHCCCEEEEEecCCHHHHHHHH---hcCCCEEE--eCCHHHHH
Confidence 57788888877776664 57777776554 67999977 66676554
No 240
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=34.12 E-value=40 Score=32.85 Aligned_cols=69 Identities=10% Similarity=0.023 Sum_probs=41.2
Q ss_pred ChhhHhhhccccC---CCCeEEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEE
Q 025857 119 TPQELQQLQPADG---QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIV 187 (247)
Q Consensus 119 ~~e~le~a~~~~~---~~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVl 187 (247)
.+++.+.+..+.+ ..|+++|+...=--.=.-+.|..+.+.-.++.-.+.|..-++.+...++.|+|+|-
T Consensus 106 ~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vK 177 (346)
T PRK05096 106 SDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVK 177 (346)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEE
Confidence 4566677765554 68999999764332333344444433222334445555555566667788999984
No 241
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=33.96 E-value=2.4e+02 Score=22.39 Aligned_cols=68 Identities=19% Similarity=0.212 Sum_probs=40.3
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~--~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
..|.++++..-... .--.++..++. ....++..... .+.......++.|++|.+.+|.+..++.+.-.
T Consensus 49 ~~dlvild~~l~~~-~g~~~~~~l~~~~~~~~ii~ls~~-~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 118 (210)
T PRK09935 49 PVDLIIMDIDLPGT-DGFTFLKRIKQIQSTVKVLFLSSK-SECFYAGRAIQAGANGFVSKCNDQNDIFHAVQ 118 (210)
T ss_pred CCCEEEEeCCCCCC-CHHHHHHHHHHhCCCCcEEEEECC-CcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Confidence 45666665432221 12234444432 23445544433 45556678899999999999999887765443
No 242
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=33.93 E-value=3.5e+02 Score=24.32 Aligned_cols=120 Identities=9% Similarity=0.101 Sum_probs=60.3
Q ss_pred chhHHHHHHHhCCcEEEecC---cchHHHhhc----cceeEEeeeeecCCceecCCCCeEEEEE----EecChhhHhhhc
Q 025857 59 SKQVMTAAVERGWNTFVFLS---ENQQLAIDW----STIALLDPLFIKEGEVYDSGDRRVGSII----EVSTPQELQQLQ 127 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~~---~~~e~~~~l----g~i~~i~pl~i~~g~~~~~~g~~va~~~----~I~~~e~le~a~ 127 (247)
+-+-+...++.|++.+++.+ ++.+.++++ ++-.++-.+-+.+|. .|. .-++. +..+...++.+.
T Consensus 85 s~~d~~~l~~~G~~~vvigs~~~~~~~~~~~~~~~~~~~~i~vsiD~k~g~----~~~-~~v~~~gw~~~~~~~~~e~~~ 159 (258)
T PRK01033 85 TLEQAKKIFSLGVEKVSINTAALEDPDLITEAAERFGSQSVVVSIDVKKNL----GGK-FDVYTHNGTKKLKKDPLELAK 159 (258)
T ss_pred CHHHHHHHHHCCCCEEEEChHHhcCHHHHHHHHHHhCCCcEEEEEEEecCC----CCc-EEEEEcCCeecCCCCHHHHHH
Confidence 55667778899999999865 334455544 321222222222220 111 01111 112222223332
Q ss_pred cc-cCCCCeEEEecC---------CCeeechhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEec
Q 025857 128 PA-DGQAENIVIDLP---------DWQVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 128 ~~-~~~~~~vVv~~~---------DWtiIPlENlIA~~q~~~~~lia~--v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
.. ...++.+++... ||..| +.+ + +..+..|++. +.+.++++.+++ +.|+|||++..
T Consensus 160 ~~~~~g~~~ii~~~i~~~G~~~G~d~~~i--~~~-~--~~~~ipvIasGGv~s~eD~~~l~~--~~GvdgVivg~ 227 (258)
T PRK01033 160 EYEALGAGEILLNSIDRDGTMKGYDLELL--KSF-R--NALKIPLIALGGAGSLDDIVEAIL--NLGADAAAAGS 227 (258)
T ss_pred HHHHcCCCEEEEEccCCCCCcCCCCHHHH--HHH-H--hhCCCCEEEeCCCCCHHHHHHHHH--HCCCCEEEEcc
Confidence 22 224567777633 34433 222 2 2234456654 689999887764 45999999754
No 243
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=33.71 E-value=61 Score=24.87 Aligned_cols=45 Identities=22% Similarity=0.347 Sum_probs=32.1
Q ss_pred CCcEEEEE-eCchhHHHHHHHhCCcEEEecCc------chHHHhhccceeEEe
Q 025857 49 KPKRVWIW-TESKQVMTAAVERGWNTFVFLSE------NQQLAIDWSTIALLD 94 (247)
Q Consensus 49 ~~K~vWiW-~~~KevvT~ALEsG~d~~v~~~~------~~e~~~~lg~i~~i~ 94 (247)
++..+||= -++.+++..|+++|+.++|+..+ -.+++++.+ +.++.
T Consensus 39 ~~~~lvIt~gdR~di~~~a~~~~i~~iIltg~~~~~~~v~~la~~~~-i~vi~ 90 (105)
T PF07085_consen 39 KPGDLVITPGDREDIQLAAIEAGIACIILTGGLEPSEEVLELAKELG-IPVIS 90 (105)
T ss_dssp HTTEEEEEETT-HHHHHHHCCTTECEEEEETT----HHHHHHHHHHT--EEEE
T ss_pred CCCeEEEEeCCcHHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHCC-CEEEE
Confidence 34789998 57899999999999999887421 256777766 55543
No 244
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=33.62 E-value=2e+02 Score=23.21 Aligned_cols=59 Identities=25% Similarity=0.254 Sum_probs=46.8
Q ss_pred eechhhhhhcccCCCceEEEEcCCH----HHHHHHHHHhhc-c-cCeEEEecCCHHHHHHHHHhhc
Q 025857 145 VIPAENIVASFQGSGKTVFAISKTP----SEAQIFLEALEQ-G-LGGIVLKVEDVKAVLALKEYFD 204 (247)
Q Consensus 145 iIPlENlIA~~q~~~~~lia~v~~~----~EA~val~~LE~-G-~DGVll~~~d~~ev~~l~~~~~ 204 (247)
+..|+.++..+.+ +..++-..++. +-++..+..+.+ | .+-|++.+-++..++.+++...
T Consensus 48 i~tL~e~l~~~~~-~~~i~leiK~~~~~~~~~~~l~~~i~~~~~~~~v~i~s~~~~~l~~~~~~~p 112 (189)
T cd08556 48 IPTLEEVLELVKG-GVGLNIELKEPTRYPGLEAKVAELLREYGLEERVVVSSFDHEALRALKELDP 112 (189)
T ss_pred CCCHHHHHHhccc-CcEEEEEECCCCCchhHHHHHHHHHHHcCCcCCEEEEeCCHHHHHHHHHhCC
Confidence 8889999999887 67899999986 345555555555 4 7999999999999988887643
No 245
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=33.59 E-value=57 Score=27.36 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=23.5
Q ss_pred CCcEEEEEe-Cc-hhHHHHHHHhCCcEEEe
Q 025857 49 KPKRVWIWT-ES-KQVMTAAVERGWNTFVF 76 (247)
Q Consensus 49 ~~K~vWiW~-~~-KevvT~ALEsG~d~~v~ 76 (247)
....+++|+ .+ .+.+...++.|+|+++.
T Consensus 148 ~g~~v~~wtvn~~~~~~~~l~~~Gvd~i~T 177 (179)
T cd08555 148 LGLLSRIWTVNDNNEIINKFLNLGVDGLIT 177 (179)
T ss_pred CCCEEEEEeeCChHHHHHHHHHcCCCEEeC
Confidence 456799999 45 89999999999999874
No 246
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=32.87 E-value=3.3e+02 Score=23.63 Aligned_cols=134 Identities=15% Similarity=0.078 Sum_probs=64.2
Q ss_pred EEEEe--CchhHHHHHHHhCCcEEEecC---cchHHHhhccce----eEEeeeeecCCceecCCCCeEEEE--EEecChh
Q 025857 53 VWIWT--ESKQVMTAAVERGWNTFVFLS---ENQQLAIDWSTI----ALLDPLFIKEGEVYDSGDRRVGSI--IEVSTPQ 121 (247)
Q Consensus 53 vWiW~--~~KevvT~ALEsG~d~~v~~~---~~~e~~~~lg~i----~~i~pl~i~~g~~~~~~g~~va~~--~~I~~~e 121 (247)
+|+=- ++.+-+..+++.|++.+++.+ ++.+.++++.+- .++-.+-+.++.+ ...-+++.. .+....+
T Consensus 77 v~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~--~~~~~v~~~~~~~~~~~~ 154 (232)
T TIGR03572 77 LTVGGGIRSLEDAKKLLSLGADKVSINTAALENPDLIEEAARRFGSQCVVVSIDVKKELD--GSDYKVYSDNGRRATGRD 154 (232)
T ss_pred EEEECCCCCHHHHHHHHHcCCCEEEEChhHhcCHHHHHHHHHHcCCceEEEEEEeccCCC--CCcEEEEECCCcccCCCC
Confidence 55522 466777778999999999864 234555554331 1222222222210 000011110 0111112
Q ss_pred hHhhhccc-cCCCCeEEEecCCC----eeechhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEec
Q 025857 122 ELQQLQPA-DGQAENIVIDLPDW----QVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 122 ~le~a~~~-~~~~~~vVv~~~DW----tiIPlENlIA~~q~~~~~lia~--v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
.++.+... ...++.+++...+- +=..+|.+-+-.+..+..|++. +++.++++.++ .+.|+|||++.+
T Consensus 155 ~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l--~~~gadgV~vg~ 228 (232)
T TIGR03572 155 PVEWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVA--LEAGASAVAAAS 228 (232)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHH--HHcCCCEEEEeh
Confidence 23333222 22467777776211 1123333333222334455554 47888888744 345999999865
No 247
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=32.26 E-value=60 Score=26.34 Aligned_cols=29 Identities=14% Similarity=0.352 Sum_probs=24.0
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEe
Q 025857 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVF 76 (247)
Q Consensus 48 ~~~K~vWiW~-~~KevvT~ALEsG~d~~v~ 76 (247)
+..+.+++|+ .+++.+..++..|+|+++.
T Consensus 158 ~~g~~v~~wtvn~~~~~~~~~~~GVdgI~T 187 (189)
T cd08556 158 AAGLKVYVWTVNDPEDARRLLALGVDGIIT 187 (189)
T ss_pred HcCCEEEEEcCCCHHHHHHHHHCCCCEEec
Confidence 4567788899 5789999999999998875
No 248
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=32.13 E-value=2.6e+02 Score=27.65 Aligned_cols=120 Identities=12% Similarity=0.087 Sum_probs=66.4
Q ss_pred EEEEeCchhHHHHHHHhCCcEEEecCcc---hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccc
Q 025857 53 VWIWTESKQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (247)
Q Consensus 53 vWiW~~~KevvT~ALEsG~d~~v~~~~~---~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~ 129 (247)
+++-.+..+.+.+.+|.|+|-|++...| ....+-+..|..--| +. .-+...|.+.++-..+...
T Consensus 148 vg~~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p------------~~-~vi~g~V~T~e~a~~l~~a 214 (404)
T PRK06843 148 VSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYP------------NL-DLIAGNIVTKEAALDLISV 214 (404)
T ss_pred EeCCHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCC------------CC-cEEEEecCCHHHHHHHHHc
Confidence 3333346789999999999988864322 111122222222112 10 0123467777776666544
Q ss_pred cCCCCeEEEec-----------CCCeeec----hhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 130 DGQAENIVIDL-----------PDWQVIP----AENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 130 ~~~~~~vVv~~-----------~DWtiIP----lENlIA~~q~~~~~lia~--v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
.+|.|.+-- .+|- .| +..+-..++..+..|||. +++..++.. +|..|+|+|++-.-
T Consensus 215 --GaD~I~vG~g~Gs~c~tr~~~g~g-~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~K---ALalGA~aVmvGs~ 287 (404)
T PRK06843 215 --GADCLKVGIGPGSICTTRIVAGVG-VPQITAICDVYEVCKNTNICIIADGGIRFSGDVVK---AIAAGADSVMIGNL 287 (404)
T ss_pred --CCCEEEECCCCCcCCcceeecCCC-CChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHH---HHHcCCCEEEEcce
Confidence 466665431 1231 23 223323334556778886 468887765 46699999998653
No 249
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=32.12 E-value=51 Score=32.98 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=39.8
Q ss_pred CCCCeEEEecCCCeeechhhhhhcccCC--CceEEE-EcCCHHHHHHHHHHhhcccCeEE
Q 025857 131 GQAENIVIDLPDWQVIPAENIVASFQGS--GKTVFA-ISKTPSEAQIFLEALEQGLGGIV 187 (247)
Q Consensus 131 ~~~~~vVv~~~DWtiIPlENlIA~~q~~--~~~lia-~v~~~~EA~val~~LE~G~DGVl 187 (247)
..++.++++...=.-.-+.++|..+.+. +..|+| -+.+.++|+-+. +.|+|+|-
T Consensus 238 aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~---~aGad~v~ 294 (479)
T PRK07807 238 AGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLV---EAGADIVK 294 (479)
T ss_pred hCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHH---HcCCCEEE
Confidence 4688899997755566677777776654 456777 778888887665 57999986
No 250
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=31.84 E-value=2.9e+02 Score=22.65 Aligned_cols=68 Identities=15% Similarity=0.097 Sum_probs=40.0
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~----~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
..+.++++..-...=.++ ++..++. ....++.... ..+......+++.|+++.+.+|-+..++.+...
T Consensus 46 ~~dlvild~~l~~~~g~~-~~~~l~~~~~~~~~pvi~ls~-~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~ 117 (229)
T PRK10161 46 WPDLILLDWMLPGGSGIQ-FIKHLKRESMTRDIPVVMLTA-RGEEEDRVRGLETGADDYITKPFSPKELVARIK 117 (229)
T ss_pred CCCEEEEeCCCCCCCHHH-HHHHHHhccccCCCCEEEEEC-CCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Confidence 457777765433222222 2222222 2334555443 345566778899999999999999887654433
No 251
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=31.78 E-value=1.1e+02 Score=25.97 Aligned_cols=29 Identities=3% Similarity=0.130 Sum_probs=19.7
Q ss_pred CHHHHHHHHH-HhhcccCeEEEecCCHHHH
Q 025857 168 TPSEAQIFLE-ALEQGLGGIVLKVEDVKAV 196 (247)
Q Consensus 168 ~~~EA~val~-~LE~G~DGVll~~~d~~ev 196 (247)
+.++....++ ...+|+||+++.|.|++.+
T Consensus 45 ~~~~~~~~~~~l~~~~vDgiii~~~~~~~~ 74 (274)
T cd06311 45 DTEQQNAQQDLLINRKIDALVILPFESAPL 74 (274)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCchhh
Confidence 4555555555 5567899999988776544
No 252
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=31.24 E-value=1.6e+02 Score=27.37 Aligned_cols=131 Identities=13% Similarity=0.165 Sum_probs=70.5
Q ss_pred CchhHHHHHHHhCCcEEEecC------cchHHHhhccceeEEe--eeeecCCceecCCCCeEEEEEEecChhhHhhhccc
Q 025857 58 ESKQVMTAAVERGWNTFVFLS------ENQQLAIDWSTIALLD--PLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~------~~~e~~~~lg~i~~i~--pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~ 129 (247)
.+.+.+..||+.|++.|.++. ++.+.++++-.+..-. |+-.+.|.+=..++.....-...+++++...+...
T Consensus 85 ~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~ 164 (281)
T PRK06806 85 MTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEE 164 (281)
T ss_pred CCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHh
Confidence 478999999999999999863 2234444443332211 11112221110111110111335788887666543
Q ss_pred cCCCCeEEEec-------CCCeeechhhhhhcccCCCceEEEEcC---CHHHHHHHHHHhhcccCeEEEecCC
Q 025857 130 DGQAENIVIDL-------PDWQVIPAENIVASFQGSGKTVFAISK---TPSEAQIFLEALEQGLGGIVLKVED 192 (247)
Q Consensus 130 ~~~~~~vVv~~-------~DWtiIPlENlIA~~q~~~~~lia~v~---~~~EA~val~~LE~G~DGVll~~~d 192 (247)
..+||+-+.. .+...|.+|-|=.--+..+.-+++.=. +.++ +-.+.+.|+++|=+.++=
T Consensus 165 -tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~---~~~~i~~G~~kinv~T~i 233 (281)
T PRK06806 165 -TDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPED---FKKCIQHGIRKINVATAT 233 (281)
T ss_pred -hCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHH---HHHHHHcCCcEEEEhHHH
Confidence 2478877721 244556666443322233444555552 3444 445789999999998873
No 253
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=31.22 E-value=2.4e+02 Score=23.33 Aligned_cols=68 Identities=16% Similarity=0.093 Sum_probs=39.5
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~--~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
..+.++++..-+..-.+ .++..++. .+..++..... .+.......++.|+|+++.+|-+..++.+...
T Consensus 49 ~~dlvild~~l~~~~g~-~~~~~lr~~~~~~pii~ls~~-~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~ 118 (239)
T PRK09468 49 SFHLMVLDLMLPGEDGL-SICRRLRSQNNPTPIIMLTAK-GEEVDRIVGLEIGADDYLPKPFNPRELLARIR 118 (239)
T ss_pred CCCEEEEeCCCCCCCHH-HHHHHHHhcCCCCCEEEEECC-CcHHHHHHHHhcCCCeEEECCCCHHHHHHHHH
Confidence 45677776543332222 22222222 23455555543 33344567799999999999999887655433
No 254
>PF11303 DUF3105: Protein of unknown function (DUF3105); InterPro: IPR021454 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=31.07 E-value=72 Score=26.68 Aligned_cols=33 Identities=21% Similarity=0.112 Sum_probs=26.2
Q ss_pred HHHHHHhhcccCeEEEecC-CHHHHHHHHHhhcc
Q 025857 173 QIFLEALEQGLGGIVLKVE-DVKAVLALKEYFDG 205 (247)
Q Consensus 173 ~val~~LE~G~DGVll~~~-d~~ev~~l~~~~~~ 205 (247)
+.+.-.||||+==|.-+|+ +++++.+|+++++.
T Consensus 41 e~~VH~LEHGaV~i~Y~p~~~~~~v~~L~~l~~~ 74 (130)
T PF11303_consen 41 ERAVHNLEHGAVWITYDPCLPPDQVAKLKALAKS 74 (130)
T ss_pred HHHHHhhhcCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 4455678999888888888 88888888888765
No 255
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=31.03 E-value=1.7e+02 Score=22.78 Aligned_cols=40 Identities=23% Similarity=0.324 Sum_probs=27.7
Q ss_pred eEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 161 TVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 161 ~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
.++... ...+.......++.|+++++..|.+..++.+...
T Consensus 79 ~ii~ls-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 118 (211)
T PRK15369 79 NILVLT-ARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQ 118 (211)
T ss_pred cEEEEe-CCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHH
Confidence 444443 3344455667899999999999999886654443
No 256
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=30.91 E-value=2.3e+02 Score=23.11 Aligned_cols=69 Identities=14% Similarity=0.134 Sum_probs=39.5
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHh
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEY 202 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~--~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~ 202 (247)
..+.++++..-...=.+ .++..++. .+..++.... ..+......+++.|+|+.+.+|-++.++.+....
T Consensus 44 ~~dlvild~~l~~~~g~-~l~~~lr~~~~~~pii~ls~-~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~ 114 (223)
T PRK10816 44 LPDIAIVDLGLPDEDGL-SLIRRWRSNDVSLPILVLTA-RESWQDKVEVLSAGADDYVTKPFHIEEVMARMQA 114 (223)
T ss_pred CCCEEEEECCCCCCCHH-HHHHHHHhcCCCCCEEEEEc-CCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHH
Confidence 45666766443222112 23333322 2344554443 3344455788999999999999998876554433
No 257
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=30.82 E-value=4e+02 Score=24.02 Aligned_cols=128 Identities=13% Similarity=-0.049 Sum_probs=62.6
Q ss_pred CchhHHHHHHHhCCcEEEecC---cchHHHhhccce---eEEeeeeecCCceecCCCCeEEEEEEe-cChhhHhhhcccc
Q 025857 58 ESKQVMTAAVERGWNTFVFLS---ENQQLAIDWSTI---ALLDPLFIKEGEVYDSGDRRVGSIIEV-STPQELQQLQPAD 130 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~---~~~e~~~~lg~i---~~i~pl~i~~g~~~~~~g~~va~~~~I-~~~e~le~a~~~~ 130 (247)
++.+-+...|+.|++.+++.+ .+.+..+++.+. .++ +.+|- .. ++++..++.-.-. ++..-++.+....
T Consensus 84 rs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g~~iv--vslD~-k~-~g~~~~v~~~Gw~~~~~~~~~~~~~~~ 159 (243)
T TIGR01919 84 RDDSSLRAALTGGRARVNGGTAALENPWWAAAVIRYGGDIVA--VGLDV-LE-DGEWHTLGNRGWSDGGGDLEVLERLLD 159 (243)
T ss_pred CCHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHccccEE--EEEEE-ec-CCceEEEECCCeecCCCcHHHHHHHHH
Confidence 689999999999999999864 245555555321 111 12221 00 1111222221111 2211122222211
Q ss_pred -CCCCeEEEecC--C-C-eeechhhhhhcc-cCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 025857 131 -GQAENIVIDLP--D-W-QVIPAENIVASF-QGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 131 -~~~~~vVv~~~--D-W-tiIPlENlIA~~-q~~~~~lia--~v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
..+..+|+..- | = +=+.+|. +.++ +..+..+++ .+++.+|-+..-..-+.|++||++..
T Consensus 160 ~~g~~~ii~tdI~~dGt~~G~d~~l-~~~l~~~~~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~ 226 (243)
T TIGR01919 160 SGGCSRVVVTDSKKDGLSGGPNELL-LEVVAARTDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGK 226 (243)
T ss_pred hCCCCEEEEEecCCcccCCCcCHHH-HHHHHhhCCCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhH
Confidence 12344454421 1 1 1223332 2222 123456665 46899998876555578999999854
No 258
>PRK15447 putative protease; Provisional
Probab=30.73 E-value=1.9e+02 Score=26.77 Aligned_cols=80 Identities=20% Similarity=0.173 Sum_probs=54.4
Q ss_pred ChhhHhhhccccCCCCeEEEecCC------CeeechhhhhhcccCCCceEEEEcCC----HHHHHHHHHHhhcccCeEEE
Q 025857 119 TPQELQQLQPADGQAENIVIDLPD------WQVIPAENIVASFQGSGKTVFAISKT----PSEAQIFLEALEQGLGGIVL 188 (247)
Q Consensus 119 ~~e~le~a~~~~~~~~~vVv~~~D------WtiIPlENlIA~~q~~~~~lia~v~~----~~EA~val~~LE~G~DGVll 188 (247)
+.+++-.+.... .+|-|.+.... |+.=-+..++..++..+.+|+..... .+|-+.+...++.|.|||++
T Consensus 16 ~~~~~~~~~~~~-gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v~v 94 (301)
T PRK15447 16 TVRDFYQRAADS-PVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGEFLVEA 94 (301)
T ss_pred CHHHHHHHHHcC-CCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCCCEEEE
Confidence 445544443332 36766665433 77777788888887877788776643 45777888899999998774
Q ss_pred ecCCHHHHHHHHH
Q 025857 189 KVEDVKAVLALKE 201 (247)
Q Consensus 189 ~~~d~~ev~~l~~ 201 (247)
.|++.+.-+++
T Consensus 95 --~d~g~l~~~~e 105 (301)
T PRK15447 95 --NDLGAVRLLAE 105 (301)
T ss_pred --eCHHHHHHHHh
Confidence 77887766665
No 259
>KOG4615 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.67 E-value=10 Score=30.92 Aligned_cols=19 Identities=42% Similarity=0.842 Sum_probs=15.3
Q ss_pred ecCCcceeeeeccCCCCCC
Q 025857 225 VAGMGDRVCVDLCSLMRPG 243 (247)
Q Consensus 225 ~vGmGDRVCVDTcSlm~~G 243 (247)
..|-=+|||+-||=++..|
T Consensus 81 aagtvhrvcittcflfsag 99 (122)
T KOG4615|consen 81 AAGTVHRVCITTCFLFSAG 99 (122)
T ss_pred hcCceeehhhHHHHHhcch
Confidence 3466689999999988765
No 260
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=30.63 E-value=3.2e+02 Score=24.64 Aligned_cols=121 Identities=19% Similarity=0.300 Sum_probs=0.0
Q ss_pred CchhHHHHHHHhCCcE--EEecCcc-----hHHHhhccceeE-Eee--eeecC---------------------------
Q 025857 58 ESKQVMTAAVERGWNT--FVFLSEN-----QQLAIDWSTIAL-LDP--LFIKE--------------------------- 100 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~--~v~~~~~-----~e~~~~lg~i~~-i~p--l~i~~--------------------------- 100 (247)
.+.+-+.+|.+.|+|+ |||.+.. .+.++++.+-.- +.. +|.+.
T Consensus 10 t~~eda~~a~~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~e~~~~ 89 (208)
T COG0135 10 TRLEDAKAAAKAGADYIGFIFVPKSPRYVSPEQAREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGDEDPEY 89 (208)
T ss_pred CCHHHHHHHHHcCCCEEEEEEcCCCCCcCCHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCCCCHHH
Q ss_pred -CceecCCCCeEEEEEEecChhhHhhhccccCCCCeEEEecC------------CCeeechhhhhhcccCCCceEEEEcC
Q 025857 101 -GEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLP------------DWQVIPAENIVASFQGSGKTVFAISK 167 (247)
Q Consensus 101 -g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vVv~~~------------DWtiIPlENlIA~~q~~~~~lia~v~ 167 (247)
..+...-+.++--.+.+....+++.+......++.++++.. ||+.+|-= ....--++|.==
T Consensus 90 ~~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~------~~~~~~~LAGGL 163 (208)
T COG0135 90 IDQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL------RLSKPVMLAGGL 163 (208)
T ss_pred HHHHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCCCcEECHHHhccc------cccCCEEEECCC
Q ss_pred CHHHHHHHHHHhh-cccC
Q 025857 168 TPSEAQIFLEALE-QGLG 184 (247)
Q Consensus 168 ~~~EA~val~~LE-~G~D 184 (247)
|++-.+.|+...- .|+|
T Consensus 164 ~p~NV~~ai~~~~p~gvD 181 (208)
T COG0135 164 NPDNVAEAIALGPPYGVD 181 (208)
T ss_pred CHHHHHHHHHhcCCceEE
No 261
>PRK10403 transcriptional regulator NarP; Provisional
Probab=30.58 E-value=2e+02 Score=22.74 Aligned_cols=40 Identities=15% Similarity=0.305 Sum_probs=26.5
Q ss_pred eEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 161 TVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 161 ~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
.++..... .+.......++.|++|++.+|.++.++.+..+
T Consensus 82 ~ii~l~~~-~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~ 121 (215)
T PRK10403 82 QIIILTVS-DASSDVFALIDAGADGYLLKDSDPEVLLEAIR 121 (215)
T ss_pred eEEEEeCC-CChHHHHHHHHcCCCeEEecCCCHHHHHHHHH
Confidence 44444322 33445556789999999999999886654433
No 262
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=30.52 E-value=1.3e+02 Score=27.93 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHhhcccCeEEEecCC------HHHHHHHHHhhcc
Q 025857 167 KTPSEAQIFLEALEQGLGGIVLKVED------VKAVLALKEYFDG 205 (247)
Q Consensus 167 ~~~~EA~val~~LE~G~DGVll~~~d------~~ev~~l~~~~~~ 205 (247)
+.++=.+.|.-+++.|+|||.+++.. -.++..|++.+..
T Consensus 20 ~~Pdpv~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~ 64 (239)
T PF03740_consen 20 NYPDPVEAARIAEEAGADGITVHLREDRRHIQDRDVRRLRELVKT 64 (239)
T ss_dssp S-S-HHHHHHHHHHTT-SEEEEEB-TT-SSS-HHHHHHHHHH-SS
T ss_pred CCCCHHHHHHHHHHcCCCEEEeccCCCcCcCCHHHHHHHHHHccc
Confidence 34555677888899999999999874 6788888887753
No 263
>PRK08187 pyruvate kinase; Validated
Probab=30.15 E-value=2.5e+02 Score=28.49 Aligned_cols=136 Identities=14% Similarity=0.137 Sum_probs=73.0
Q ss_pred CchhHHHHHHHhCCcEEEecC-cchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCC--
Q 025857 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAE-- 134 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~-~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~-- 134 (247)
.+++-+..+++ ++|.|.++. ++++.++.+..+-- - .++. .+..++++..|++++.++.+.+.....+
T Consensus 313 kD~~DL~f~~~-~vD~I~lSfV~saeDV~~l~~~L~--~---~~~~----~~~~~~IIaKIET~~gv~Nl~eI~~~ad~~ 382 (493)
T PRK08187 313 KDRADLDFVAR-HADLVGYSFVQSPGDVEALQAALA--A---RRPD----DWRKLGLVLKIETPRAVANLPELIVQAAGR 382 (493)
T ss_pred hHHHHHHHHHh-cCCEEEECCCCCHHHHHHHHHHHH--H---hCCC----CCCCCeEEEEECCHHHHHHHHHHHHHhCcC
Confidence 45777888888 799888764 33444443322210 0 0000 0135678889999998888865553332
Q ss_pred ---eEEEecCC------Ceeech--hhhhhcccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC
Q 025857 135 ---NIVIDLPD------WQVIPA--ENIVASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED 192 (247)
Q Consensus 135 ---~vVv~~~D------WtiIPl--ENlIA~~q~~~~~lia~-----------v~~~~EA~val~~LE~G~DGVll~~~d 192 (247)
-+++-..| ++-.|. +.||.+....+.-+|.. ..+-.|+--++.+ .|+|+|+|..-.
T Consensus 383 ~v~GImiARGDLgvEig~e~~p~~Qk~II~~craagkpvI~ATQmLESM~~~p~PTRAEvtDvAna--dgaDavMLs~G~ 460 (493)
T PRK08187 383 QPFGVMIARGDLAVEIGFERLAEMQEEILWLCEAAHVPVIWATQVLEGLVKKGLPSRAEMTDAAMA--ARAECVMLNKGP 460 (493)
T ss_pred CCcEEEEEchHhhhhcCcccChHHHHHHHHHHHHhCCCeEEEchhhHhhccCCCCchHHHHHHHhh--cCCCEEeecCCC
Confidence 55655444 333332 22333333333333321 1133333333333 899999998443
Q ss_pred --HHHHHHHHHhhcc
Q 025857 193 --VKAVLALKEYFDG 205 (247)
Q Consensus 193 --~~ev~~l~~~~~~ 205 (247)
.+.|+-+.+++.+
T Consensus 461 ypveaV~~l~~I~~~ 475 (493)
T PRK08187 461 YLVEAVTFLDDLLAR 475 (493)
T ss_pred CHHHHHHHHHHHHHH
Confidence 5666667776654
No 264
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=30.14 E-value=4.1e+02 Score=27.28 Aligned_cols=116 Identities=11% Similarity=-0.005 Sum_probs=66.5
Q ss_pred cEEEE--EeCc-hhHHHHHHHhCCcEEEecCcchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhc
Q 025857 51 KRVWI--WTES-KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQ 127 (247)
Q Consensus 51 K~vWi--W~~~-KevvT~ALEsG~d~~v~~~~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~ 127 (247)
+.+.| .-+- +.+...-.+.|.+.++++. |.+.++++.+- |. ..+|.+.++++-++.+-
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~-d~~~v~~~~~~-----------------g~-~v~~GDat~~~~L~~ag 461 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDH-DPDHIETLRKF-----------------GM-KVFYGDATRMDLLESAG 461 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEEC-CHHHHHHHHhc-----------------CC-eEEEEeCCCHHHHHhcC
Confidence 44555 3332 3343444445888877763 45556554331 21 24677777777766653
Q ss_pred cccCCCCeEEEecCCCe-eechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 128 PADGQAENIVIDLPDWQ-VIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 128 ~~~~~~~~vVv~~~DWt-iIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
. .+++.+|+...|.+ .+=+= ..|+-...+.++++.++|.+++... .+.|+|-|+-.+-
T Consensus 462 i--~~A~~vvv~~~d~~~n~~i~-~~ar~~~p~~~iiaRa~d~~~~~~L---~~~Gad~v~~e~~ 520 (621)
T PRK03562 462 A--AKAEVLINAIDDPQTSLQLV-ELVKEHFPHLQIIARARDVDHYIRL---RQAGVEKPERETF 520 (621)
T ss_pred C--CcCCEEEEEeCCHHHHHHHH-HHHHHhCCCCeEEEEECCHHHHHHH---HHCCCCEEehhhH
Confidence 2 35677777777643 22111 1222224566899999999886644 4679998865444
No 265
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=29.64 E-value=4e+02 Score=23.60 Aligned_cols=106 Identities=13% Similarity=0.063 Sum_probs=59.5
Q ss_pred EeeeeecCCceecCC-CCeEEE------EEEecChhhHhhhccccCCCCeEEEecCCCe-eec-hhhhhhccc-CCCceE
Q 025857 93 LDPLFIKEGEVYDSG-DRRVGS------IIEVSTPQELQQLQPADGQAENIVIDLPDWQ-VIP-AENIVASFQ-GSGKTV 162 (247)
Q Consensus 93 i~pl~i~~g~~~~~~-g~~va~------~~~I~~~e~le~a~~~~~~~~~vVv~~~DWt-iIP-lENlIA~~q-~~~~~l 162 (247)
|..+.+.+|..++.. |.+--+ +....||.++....... .++++.+-..|=. --| -..+|.++- ..+..+
T Consensus 4 IP~iDl~~g~~Vr~~~G~~~~~~~~~~~~~~~~dP~~~a~~~~~~-g~~~l~ivDLd~~~~~~~n~~~i~~i~~~~~v~v 82 (221)
T TIGR00734 4 IPVIDLKDGIAVAGKSGERESYPPLESVSRLSSSPDDAAKVIEEI-GARFIYIADLDRIVGLGDNFSLLSKLSKRVELIA 82 (221)
T ss_pred EEEEEeeCCEEEEccccCcccccccccceecCCCHHHHHHHHHHc-CCCEEEEEEcccccCCcchHHHHHHHHhhCcEEE
Confidence 334556677777654 222111 34456776655554322 3555444332211 111 112233321 224567
Q ss_pred EEEcCCHHHHHHHHHHhhcccCeEEEecC---CHHHHHHHH
Q 025857 163 FAISKTPSEAQIFLEALEQGLGGIVLKVE---DVKAVLALK 200 (247)
Q Consensus 163 ia~v~~~~EA~val~~LE~G~DGVll~~~---d~~ev~~l~ 200 (247)
-..+++.++++.++..|+. +|=|++.|. ||+.+.++.
T Consensus 83 gGGirs~e~~~~~~~~l~~-a~rvvigT~a~~~p~~l~~~~ 122 (221)
T TIGR00734 83 DCGVRSPEDLETLPFTLEF-ASRVVVATETLDITELLRECY 122 (221)
T ss_pred cCccCCHHHHHHHHhhhcc-ceEEeecChhhCCHHHHHHhh
Confidence 7788999999999888887 999999985 666665554
No 266
>PRK09581 pleD response regulator PleD; Reviewed
Probab=29.02 E-value=3.3e+02 Score=24.81 Aligned_cols=66 Identities=15% Similarity=0.168 Sum_probs=42.7
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~----~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l 199 (247)
..+.++++..-+. .....++..++. ....++...... +......+++.|+++.+.+|-+++++.+.
T Consensus 46 ~~dlvi~d~~~~~-~~g~~l~~~i~~~~~~~~~~ii~~s~~~-~~~~~~~~~~~ga~~~l~kp~~~~~l~~~ 115 (457)
T PRK09581 46 QPDIILLDVMMPG-MDGFEVCRRLKSDPATTHIPVVMVTALD-DPEDRVRGLEAGADDFLTKPINDVALFAR 115 (457)
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHcCcccCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECCCCHHHHHHH
Confidence 4677777765332 344455555443 134566655443 44557789999999999999998877543
No 267
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=28.82 E-value=96 Score=24.12 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=20.9
Q ss_pred EEEEcCCHHHH--HHHHHHhhcccCeEE
Q 025857 162 VFAISKTPSEA--QIFLEALEQGLGGIV 187 (247)
Q Consensus 162 lia~v~~~~EA--~val~~LE~G~DGVl 187 (247)
+.....|++|| |..-.+-+.|+|+|+
T Consensus 20 v~~~~~d~d~Al~eM~e~A~~lGAnAVV 47 (74)
T TIGR03884 20 VSTESDNVDEIVENLREKVKAKGGMGLI 47 (74)
T ss_pred EEEecCCHHHHHHHHHHHHHHcCCCEEE
Confidence 45666799998 566678999999998
No 268
>PRK11173 two-component response regulator; Provisional
Probab=28.53 E-value=2.7e+02 Score=23.17 Aligned_cols=69 Identities=7% Similarity=0.091 Sum_probs=38.5
Q ss_pred CCCeEEEecC--CCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHH-HHHhh
Q 025857 132 QAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA-LKEYF 203 (247)
Q Consensus 132 ~~~~vVv~~~--DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~-l~~~~ 203 (247)
..+.++++.. +..-+.+-..+.. .....++......+ .......++.|+|+.+.+|-++.++.. +..++
T Consensus 47 ~~dlvild~~l~~~~g~~~~~~lr~--~~~~pii~lt~~~~-~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l 118 (237)
T PRK11173 47 DINLVIMDINLPGKNGLLLARELRE--QANVALMFLTGRDN-EVDKILGLEIGADDYITKPFNPRELTIRARNLL 118 (237)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHhc--CCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 4566666543 2222222222322 12334555544333 334567899999999999999987753 34433
No 269
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=27.89 E-value=1.1e+02 Score=27.96 Aligned_cols=33 Identities=21% Similarity=0.132 Sum_probs=24.3
Q ss_pred CceEEEEc--CCHHHH-HHHHHHhhcccCeEEEecC
Q 025857 159 GKTVFAIS--KTPSEA-QIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 159 ~~~lia~v--~~~~EA-~val~~LE~G~DGVll~~~ 191 (247)
+..|++.+ .+.+|| +.+-.+-+.|+|||++.|.
T Consensus 73 ~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P 108 (293)
T PRK04147 73 KVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTP 108 (293)
T ss_pred CCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 34567766 357777 4556678999999999886
No 270
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=27.53 E-value=1e+02 Score=27.66 Aligned_cols=35 Identities=9% Similarity=-0.017 Sum_probs=27.1
Q ss_pred CCcEEEEEe---CchhHHHHHHHhCCcEEEecCcchHHHh
Q 025857 49 KPKRVWIWT---ESKQVMTAAVERGWNTFVFLSENQQLAI 85 (247)
Q Consensus 49 ~~K~vWiW~---~~KevvT~ALEsG~d~~v~~~~~~e~~~ 85 (247)
+.+.|++|| .+.+.+...++-|+|+++... .+..+
T Consensus 244 ~Gl~v~~WTv~~n~~~~~~~l~~~GVdgIiTD~--p~~~~ 281 (286)
T cd08606 244 SGLVCVSYGVLNNDPENAKTQVKAGVDAVIVDS--VLAIR 281 (286)
T ss_pred CCcEEEEECCccCCHHHHHHHHHcCCCEEEECC--HHHHH
Confidence 567899997 358899999999999999743 44444
No 271
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=27.31 E-value=1.9e+02 Score=24.59 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=11.5
Q ss_pred HHHHHHHhh-cccCeEEEecC
Q 025857 172 AQIFLEALE-QGLGGIVLKVE 191 (247)
Q Consensus 172 A~val~~LE-~G~DGVll~~~ 191 (247)
.+.+.+.|. .++|||++.+.
T Consensus 53 ~~~~~~~l~~~~~dgiii~~~ 73 (275)
T cd06295 53 RDWLARYLASGRADGVILIGQ 73 (275)
T ss_pred HHHHHHHHHhCCCCEEEEeCC
Confidence 344445443 57777777554
No 272
>cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline
Probab=27.27 E-value=1e+02 Score=28.85 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=24.6
Q ss_pred CCcEEEEEe-CchhHHHHHHHhCCcEEEec
Q 025857 49 KPKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (247)
Q Consensus 49 ~~K~vWiW~-~~KevvT~ALEsG~d~~v~~ 77 (247)
.-++|.+|| .+.+.+..+++.|+|+|+..
T Consensus 208 ~i~kV~vWTVn~~~~~~~ll~~GVDGIITD 237 (265)
T cd08576 208 YLGKVYGWTSDKGSSVRKLLRLGVDGIITN 237 (265)
T ss_pred cCCeEEEEeCCCHHHHHHHHhcCCCEEEEC
Confidence 344899999 56899999999999999964
No 273
>PRK08999 hypothetical protein; Provisional
Probab=27.18 E-value=2.5e+02 Score=25.49 Aligned_cols=29 Identities=24% Similarity=0.135 Sum_probs=21.1
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 025857 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 159 ~~~lia~v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
+-.|-.-++|.+|++.| .+.|+|-|.+.|
T Consensus 226 ~~~ig~S~h~~~~~~~a---~~~~~dyi~~gp 254 (312)
T PRK08999 226 GRWVAASCHDAEELARA---QRLGVDFAVLSP 254 (312)
T ss_pred CCEEEEecCCHHHHHHH---HhcCCCEEEECC
Confidence 33455667899987655 467999998865
No 274
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=27.12 E-value=4.6e+02 Score=23.45 Aligned_cols=83 Identities=11% Similarity=0.096 Sum_probs=45.3
Q ss_pred CCeEEEEEEecChhhHhhhccccC--CCCeEEEecCCCeee----------chhhhhhcccCC-CceEEEEcC---CHHH
Q 025857 108 DRRVGSIIEVSTPQELQQLQPADG--QAENIVIDLPDWQVI----------PAENIVASFQGS-GKTVFAISK---TPSE 171 (247)
Q Consensus 108 g~~va~~~~I~~~e~le~a~~~~~--~~~~vVv~~~DWtiI----------PlENlIA~~q~~-~~~lia~v~---~~~E 171 (247)
++++.+-+--.++++...++.... .++.+-+++.-+..- .+..++.++... +.-|+...+ +.+|
T Consensus 98 ~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~ 177 (289)
T cd02810 98 GQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLED 177 (289)
T ss_pred CCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHH
Confidence 555555444456777655544433 367777876544322 234566655432 223444332 4445
Q ss_pred HHHHHH-HhhcccCeEEEec
Q 025857 172 AQIFLE-ALEQGLGGIVLKV 190 (247)
Q Consensus 172 A~val~-~LE~G~DGVll~~ 190 (247)
..-.+. +.+.|+|+|.+..
T Consensus 178 ~~~~a~~l~~~Gad~i~~~~ 197 (289)
T cd02810 178 IVELAKAAERAGADGLTAIN 197 (289)
T ss_pred HHHHHHHHHHcCCCEEEEEc
Confidence 544444 4567999999863
No 275
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=26.82 E-value=4.7e+02 Score=23.48 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=22.5
Q ss_pred CchhHHHHHHHhCCcEEEecC---cchHHHhhc
Q 025857 58 ESKQVMTAAVERGWNTFVFLS---ENQQLAIDW 87 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~---~~~e~~~~l 87 (247)
++.+-+..+|+.|++.+++.+ .+.+..+++
T Consensus 83 rs~e~~~~~l~~Ga~kvvigt~a~~~p~~~~~~ 115 (232)
T PRK13586 83 RDIEKAKRLLSLDVNALVFSTIVFTNFNLFHDI 115 (232)
T ss_pred CCHHHHHHHHHCCCCEEEECchhhCCHHHHHHH
Confidence 578889999999999999865 234444443
No 276
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=26.58 E-value=99 Score=30.87 Aligned_cols=73 Identities=11% Similarity=0.124 Sum_probs=52.5
Q ss_pred ChhhHhhhccccCCCCeEEEecC--CCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 025857 119 TPQELQQLQPADGQAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (247)
Q Consensus 119 ~~e~le~a~~~~~~~~~vVv~~~--DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ 194 (247)
|.+|++.+. ....+++.+.+- -=.+.-+..+++.+...+..|++-..+++-.+-+-++++. +||+++.+.|..
T Consensus 173 D~~Dl~~~~--~~~~d~I~lskV~sa~dv~~l~~~l~~~~~~~~~Iia~IEt~~av~nl~eI~~~-~dgi~iG~gDL~ 247 (473)
T TIGR01064 173 DKKDLKFGV--EQGVDMVAASFVRTAEDVLEVREVLGEKGAKDVKIIAKIENQEGVDNIDEIAEA-SDGIMVARGDLG 247 (473)
T ss_pred HHHHHHHHH--HCCCCEEEECCCCCHHHHHHHHHHHHhcCCCCceEEEEECCHHHHHhHHHHHhh-CCcEEEchHHHH
Confidence 444444443 335788887763 2246666777766442367899999999999999999977 899999998854
No 277
>cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti
Probab=26.41 E-value=1.2e+02 Score=29.19 Aligned_cols=53 Identities=8% Similarity=0.115 Sum_probs=35.9
Q ss_pred CeeechhhhhhcccCCCceEEE-EcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 143 WQVIPAENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 143 WtiIPlENlIA~~q~~~~~lia-~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
++.+. +.+|++++..+-++.. .|++.++++.++ +.|||||+ ||.|+.+.++-.
T Consensus 208 ~~~lt-~~~v~~~~~~Gl~V~vWTVN~~~~~~~l~---~~GVdgIi--TD~P~~l~~l~~ 261 (351)
T cd08608 208 YTQAS-AQEIRDYSASNLSVNLYTVNEPWLYSLLW---CSGVPSVT--SDASHVLRKVPF 261 (351)
T ss_pred hhhcC-HHHHHHHHHCCCEEEEEecCCHHHHHHHH---HCCCCEEE--ECCHHHHHHhhh
Confidence 34444 4677777776666554 457777776554 67999987 888997765543
No 278
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=26.39 E-value=4.8e+02 Score=23.47 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=28.4
Q ss_pred EEEcCCHHHHHHHHHHhhcccCeEEEec---CCHHHHHHHHHhh
Q 025857 163 FAISKTPSEAQIFLEALEQGLGGIVLKV---EDVKAVLALKEYF 203 (247)
Q Consensus 163 ia~v~~~~EA~val~~LE~G~DGVll~~---~d~~ev~~l~~~~ 203 (247)
-..+++.++|+.++ +.|+++|++.+ +++..++++.+.+
T Consensus 80 gGGi~s~~d~~~l~---~~G~~~vvigs~~~~~~~~~~~~~~~~ 120 (258)
T PRK01033 80 GGGIKTLEQAKKIF---SLGVEKVSINTAALEDPDLITEAAERF 120 (258)
T ss_pred CCCCCCHHHHHHHH---HCCCCEEEEChHHhcCHHHHHHHHHHh
Confidence 34578999988776 56999999988 5676666665544
No 279
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=26.39 E-value=1.2e+02 Score=24.49 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=22.1
Q ss_pred CceEEEEcCC-------HHHHHHHHHHhhcccCeEEEecC
Q 025857 159 GKTVFAISKT-------PSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 159 ~~~lia~v~~-------~~EA~val~~LE~G~DGVll~~~ 191 (247)
+..+++.+.. .+-.+.+-.+.+.|+|+|++.+.
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~ 87 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVIN 87 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEecc
Confidence 3556666543 33445567778889999998754
No 280
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=26.12 E-value=4.8e+02 Score=25.60 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=19.5
Q ss_pred EeCchhHHHHHHHhCCcEEEecC
Q 025857 56 WTESKQVMTAAVERGWNTFVFLS 78 (247)
Q Consensus 56 W~~~KevvT~ALEsG~d~~v~~~ 78 (247)
++...+.+..+.+.||-+||..+
T Consensus 31 ~t~~~e~~~~~~~~g~GAVV~KT 53 (385)
T PLN02495 31 PGTNYTVMKRAFDEGWGGVIAKT 53 (385)
T ss_pred CCCCHHHHHHHHhcCCeEEEecc
Confidence 56778999999999999988764
No 281
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=25.96 E-value=2.2e+02 Score=23.70 Aligned_cols=68 Identities=18% Similarity=0.207 Sum_probs=38.6
Q ss_pred CCCeEEEecCCCeeechh----hhhhcccCC---CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAE----NIVASFQGS---GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlE----NlIA~~q~~---~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
.++++-+...|-..+|.. .+++++... ...+--.++|+.+ .+-.+.+.|+|||.++-...++..+..+
T Consensus 25 G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~d~~~--~~~~~~~~g~dgv~vh~~~~~~~~~~~~ 99 (211)
T cd00429 25 GADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVENPER--YIEAFAKAGADIITFHAEATDHLHRTIQ 99 (211)
T ss_pred CCCEEEEecccCCCCCccccCHHHHHHHHhhCCCcEEEEeeeCCHHH--HHHHHHHcCCCEEEECccchhhHHHHHH
Confidence 467777777776655544 456665532 1122244456533 3445569999999887654433333333
No 282
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=25.86 E-value=4.8e+02 Score=23.30 Aligned_cols=108 Identities=9% Similarity=-0.040 Sum_probs=58.1
Q ss_pred EEeeeeecCCceecC-CCCeEEEEEEecChhhHhhhccccCCCCeEEEecCC---C---eeec-hhhhhhcccCCCceEE
Q 025857 92 LLDPLFIKEGEVYDS-GDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPD---W---QVIP-AENIVASFQGSGKTVF 163 (247)
Q Consensus 92 ~i~pl~i~~g~~~~~-~g~~va~~~~I~~~e~le~a~~~~~~~~~vVv~~~D---W---tiIP-lENlIA~~q~~~~~li 163 (247)
+|..+.+.+|.-+.. +|.+-.....-.||.++.........++.+.|-..| . ..++ +++|.+.. .-+..+-
T Consensus 4 iiPaIDl~~G~~Vr~~~G~~~~~~~~~~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~-~~pi~vG 82 (234)
T PRK13587 4 LWPAIDLIGSTSVRLTEGKYDSEEKMSRSAEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLT-TKDIEVG 82 (234)
T ss_pred EEEEEEccCCEEEEcCcccCCCceEeCCCHHHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhhc-CCeEEEc
Confidence 333455556665543 232222222224665544444432345555443222 1 2222 22333321 1234555
Q ss_pred EEcCCHHHHHHHHHHhhcccCeEEEecC---CHHHHHHHHHhh
Q 025857 164 AISKTPSEAQIFLEALEQGLGGIVLKVE---DVKAVLALKEYF 203 (247)
Q Consensus 164 a~v~~~~EA~val~~LE~G~DGVll~~~---d~~ev~~l~~~~ 203 (247)
..+++.++++.+|. .|++=|++.+. ||+-++++.+.+
T Consensus 83 GGIrs~e~v~~~l~---~Ga~kvvigt~a~~~~~~l~~~~~~f 122 (234)
T PRK13587 83 GGIRTKSQIMDYFA---AGINYCIVGTKGIQDTDWLKEMAHTF 122 (234)
T ss_pred CCcCCHHHHHHHHH---CCCCEEEECchHhcCHHHHHHHHHHc
Confidence 57899999998875 69999999995 677777776655
No 283
>PF12696 TraG-D_C: TraM recognition site of TraD and TraG
Probab=25.68 E-value=3.1e+02 Score=21.59 Aligned_cols=67 Identities=10% Similarity=0.157 Sum_probs=49.1
Q ss_pred ecCCCeeec-hhhhhhcccCCCceEEEEcCCHHHHHHHHH-----Hhhccc-CeEEEecCCHHHHHHHHHhhcc
Q 025857 139 DLPDWQVIP-AENIVASFQGSGKTVFAISKTPSEAQIFLE-----ALEQGL-GGIVLKVEDVKAVLALKEYFDG 205 (247)
Q Consensus 139 ~~~DWtiIP-lENlIA~~q~~~~~lia~v~~~~EA~val~-----~LE~G~-DGVll~~~d~~ev~~l~~~~~~ 205 (247)
++..+-.|| ++++++...+.+..++....+..+-+..++ ++.-.+ -=+++.+.|++..+.+.+.+.+
T Consensus 8 E~~~~~~~~~l~~~~~~~r~~gi~~~~~~Qs~~ql~~~yG~~~~~~i~~n~~~~~~~~~~d~~t~e~~s~~~G~ 81 (128)
T PF12696_consen 8 EFGNLGPIPGLEDLLATGRSYGISFILAFQSLAQLEAKYGKEGAESILGNCNNKIFFGSNDPETAEYISKLLGE 81 (128)
T ss_pred ChhhcCCcHhHHHHHHHHhcCCCEEEEEEccHHHHHHHHCHHHHHHHHHhcCceEeccCCCHHHHHHHHHHhCC
Confidence 355666677 999999999999999999999888755443 333333 3456778899988888777654
No 284
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=25.65 E-value=1.7e+02 Score=27.46 Aligned_cols=129 Identities=15% Similarity=0.244 Sum_probs=68.3
Q ss_pred chhHHHHHHHhCCcEEEecC------cchHHHhhccceeEEe--eeeecCCceecCCCCeEEEEEEecChhhHhhhcccc
Q 025857 59 SKQVMTAAVERGWNTFVFLS------ENQQLAIDWSTIALLD--PLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPAD 130 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~~------~~~e~~~~lg~i~~i~--pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~ 130 (247)
+-+.+..||+.|++.|+++. ++.+..+++-.++.-. ++-.+=|.+...++...+.- ..+++++..++..
T Consensus 88 ~~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s-~~t~peea~~f~~-- 164 (293)
T PRK07315 88 HYEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKG-ELAPIEDAKAMVE-- 164 (293)
T ss_pred CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCcc-CCCCHHHHHHHHH--
Confidence 56799999999999999852 2344444433322211 11111122221122211111 1378888777773
Q ss_pred CCCCeEEEe-------cCC-CeeechhhhhhcccC-C-CceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 131 GQAENIVID-------LPD-WQVIPAENIVASFQG-S-GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 131 ~~~~~vVv~-------~~D-WtiIPlENlIA~~q~-~-~~~lia~v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
..+||+-+. +.. -+.|-+|-|= +++. . +.-|++.=.|----.-+-.+.+.|+++|=+.++
T Consensus 165 tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~-~i~~~~~~iPlVlhGGSGi~~e~~~~~i~~Gi~KiNv~T~ 234 (293)
T PRK07315 165 TGIDFLAAGIGNIHGPYPENWEGLDLDHLE-KLTEAVPGFPIVLHGGSGIPDDQIQEAIKLGVAKVNVNTE 234 (293)
T ss_pred cCCCEEeeccccccccCCCCCCcCCHHHHH-HHHHhccCCCEEEECCCCCCHHHHHHHHHcCCCEEEEccH
Confidence 367888777 333 2346666432 2222 2 233444443111122355668999999999887
No 285
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=25.58 E-value=60 Score=30.59 Aligned_cols=61 Identities=15% Similarity=0.139 Sum_probs=35.1
Q ss_pred eeeecCCceecCCCCe-EEEEEEecChhhHhhhccccCCCCeEEEecCCCeeechhhhhhcccCC
Q 025857 95 PLFIKEGEVYDSGDRR-VGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGS 158 (247)
Q Consensus 95 pl~i~~g~~~~~~g~~-va~~~~I~~~e~le~a~~~~~~~~~vVv~~~DWtiIPlENlIA~~q~~ 158 (247)
|||.-+.-.++.+|++ +-.|+ ++++++......++..+=+-...+=+++|||+||..++.+
T Consensus 181 PlF~~~~Lti~~~n~~~iP~FF---~Kedlq~~L~~~kkq~p~l~~~~~I~V~~Le~vi~~m~~~ 242 (270)
T TIGR00995 181 PVFQSGLLVVQKKNERYCPVYF---SKEDIEQELSKFKRESPGMADSQVIMVGSMEDVLSKMETS 242 (270)
T ss_pred cEEeecceEEEeCCeEEEeeEe---eHHHHHHHHHHHhHhCcCcCCCccEEEEeHHHHHHHHhcc
Confidence 4555433333444443 22333 6688877755444333322234466899999999999874
No 286
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=25.57 E-value=63 Score=26.41 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=16.6
Q ss_pred chhHHHHHHHhCCcEEEe
Q 025857 59 SKQVMTAAVERGWNTFVF 76 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~ 76 (247)
+...+..|++.|+|+|++
T Consensus 41 ~~~~il~Af~~GADGV~V 58 (124)
T PF02662_consen 41 DPEFILRAFEKGADGVLV 58 (124)
T ss_pred CHHHHHHHHHcCCCEEEE
Confidence 578999999999999997
No 287
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=25.38 E-value=86 Score=27.37 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=23.4
Q ss_pred CCCcEEEEEeC-chhHHHHHHHhCCcEEEec
Q 025857 48 SKPKRVWIWTE-SKQVMTAAVERGWNTFVFL 77 (247)
Q Consensus 48 ~~~K~vWiW~~-~KevvT~ALEsG~d~~v~~ 77 (247)
++-+.+++|+- +.+.+..+++.|+|+|+..
T Consensus 229 ~~G~~v~vwtvn~~~~~~~~~~~Gvdgi~TD 259 (263)
T cd08567 229 ALGLKVVPWTVNDPEDMARLIDLGVDGIITD 259 (263)
T ss_pred HCCCEEEEecCCCHHHHHHHHHcCCCEEEcC
Confidence 34577899994 5778888999999998853
No 288
>PTZ00300 pyruvate kinase; Provisional
Probab=25.34 E-value=1.3e+02 Score=30.22 Aligned_cols=93 Identities=12% Similarity=0.094 Sum_probs=60.5
Q ss_pred ecCCceecCCCCeEE----EE--EEecChhhHhhhccccCCCCeEEEecC-CC-eeechhhhhhcccCCCceEEEEcCCH
Q 025857 98 IKEGEVYDSGDRRVG----SI--IEVSTPQELQQLQPADGQAENIVIDLP-DW-QVIPAENIVASFQGSGKTVFAISKTP 169 (247)
Q Consensus 98 i~~g~~~~~~g~~va----~~--~~I~~~e~le~a~~~~~~~~~vVv~~~-DW-tiIPlENlIA~~q~~~~~lia~v~~~ 169 (247)
+++|.+.+.+|.-+- -+ +.-.|+++++.+.. ..++++.+.|= +- .+..+-+++... +.+..|++-..+.
T Consensus 122 ~~gG~l~~~kgvnlp~~~~~l~~ltekD~~dI~~ald--~gvd~I~~SfVrsaeDv~~vr~~l~~~-~~~~~IiaKIEt~ 198 (454)
T PTZ00300 122 TNAHTISDRRGVNLPGCDVDLPAVSAKDCADLQFGVE--QGVDMIFASFIRSAEQVGEVRKALGAK-GGDIMIICKIENH 198 (454)
T ss_pred ecCcEecCCCccccCCCccCCCCCChhhHHHHHHHHH--CCCCEEEECCCCCHHHHHHHHHHHHhc-CCCceEEEEECCH
Confidence 456666655542211 11 22235555555443 36888888873 22 355555565442 3466899999999
Q ss_pred HHHHHHHHHhhcccCeEEEecCCHH
Q 025857 170 SEAQIFLEALEQGLGGIVLKVEDVK 194 (247)
Q Consensus 170 ~EA~val~~LE~G~DGVll~~~d~~ 194 (247)
+--+-.=+++ .|+|||++.+-|.+
T Consensus 199 eav~nldeI~-~~~DgImVaRGDLg 222 (454)
T PTZ00300 199 QGVQNIDSII-EESDGIMVARGDLG 222 (454)
T ss_pred HHHHhHHHHH-HhCCEEEEecchhh
Confidence 9999999999 89999999999854
No 289
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=24.98 E-value=1.8e+02 Score=24.79 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhcccCeEEEecCCHH
Q 025857 170 SEAQIFLEALEQGLGGIVLKVEDVK 194 (247)
Q Consensus 170 ~EA~val~~LE~G~DGVll~~~d~~ 194 (247)
.+.+..-..+.+++||+++.+.+.+
T Consensus 43 ~~~~~i~~l~~~~vdgiIi~~~~~~ 67 (273)
T cd06309 43 NQISAIRSFIAQGVDVIILAPVVET 67 (273)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCccc
Confidence 3444555667889999999987654
No 290
>PRK10651 transcriptional regulator NarL; Provisional
Probab=24.76 E-value=3.5e+02 Score=21.37 Aligned_cols=68 Identities=16% Similarity=0.201 Sum_probs=37.4
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~--~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
..+.++++..-...-. -.++..++. ....++.... ..+.......++.|+++++.+|-+..++.+...
T Consensus 52 ~~dlvl~d~~l~~~~~-~~~~~~l~~~~~~~~vi~l~~-~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~ 121 (216)
T PRK10651 52 DPDLILLDLNMPGMNG-LETLDKLREKSLSGRIVVFSV-SNHEEDVVTALKRGADGYLLKDMEPEDLLKALQ 121 (216)
T ss_pred CCCEEEEeCCCCCCcH-HHHHHHHHHhCCCCcEEEEeC-CCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Confidence 3566666643222211 122333222 2334454443 233445567889999999999998887654433
No 291
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=24.68 E-value=3.7e+02 Score=26.12 Aligned_cols=80 Identities=20% Similarity=0.319 Sum_probs=49.9
Q ss_pred EEEEEecChhhHhhhccccCCCCeEEEecCCCe--eechhh---hhh-----cccCCCceEEEEc--CCHHHHHHHHHHh
Q 025857 112 GSIIEVSTPQELQQLQPADGQAENIVIDLPDWQ--VIPAEN---IVA-----SFQGSGKTVFAIS--KTPSEAQIFLEAL 179 (247)
Q Consensus 112 a~~~~I~~~e~le~a~~~~~~~~~vVv~~~DWt--iIPlEN---lIA-----~~q~~~~~lia~v--~~~~EA~val~~L 179 (247)
-++++|.+.++++.+.... .++.+=|+-+|-+ -+=+++ |.. .+...+.-++++. ++.+|++.+.
T Consensus 232 e~LVEVH~~~ElerAl~~~-ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~--- 307 (338)
T PLN02460 232 AALIEVHDEREMDRVLGIE-GVELIGINNRSLETFEVDISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQ--- 307 (338)
T ss_pred eEEEEeCCHHHHHHHHhcC-CCCEEEEeCCCCCcceECHHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHH---
Confidence 4899999999999987542 3556667766543 222333 333 1111233345443 6888887665
Q ss_pred hcccCeEEE-----ecCCHHH
Q 025857 180 EQGLGGIVL-----KVEDVKA 195 (247)
Q Consensus 180 E~G~DGVll-----~~~d~~e 195 (247)
+.|+||||+ +.+||.+
T Consensus 308 ~~GadAvLVGEsLMr~~dp~~ 328 (338)
T PLN02460 308 NAGVKAVLVGESLVKQDDPGK 328 (338)
T ss_pred HCCCCEEEECHHHhCCCCHHH
Confidence 699999997 4566663
No 292
>PRK14725 pyruvate kinase; Provisional
Probab=24.51 E-value=1.2e+02 Score=31.79 Aligned_cols=72 Identities=11% Similarity=0.084 Sum_probs=53.2
Q ss_pred ChhhHhhhccccCCCCeEEEecC--CCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcc----cCeEEEecCC
Q 025857 119 TPQELQQLQPADGQAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQG----LGGIVLKVED 192 (247)
Q Consensus 119 ~~e~le~a~~~~~~~~~vVv~~~--DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G----~DGVll~~~d 192 (247)
|.+++..+.. .+|+|-+.|- -=.|..+-+++.+..+.+..||+-..+.+--+-.-++++.+ .|||++.-.|
T Consensus 434 D~~dl~f~~~---~vD~ValSFVrs~~DV~~lr~~L~~~g~~~~~IiaKIEt~~av~nL~eIl~~am~~~~DGIMIARGD 510 (608)
T PRK14725 434 DLEDLAFVAK---HADIVALSFVRSPEDVRLLLDALEKLGADDLGVVLKIETRRAFENLPRILLEAMRHPRFGVMIARGD 510 (608)
T ss_pred HHHHHHHHHH---hCCEEEECCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhhccCCCcEEEEECCc
Confidence 4444444442 3788888873 34477888888876555678999999998888888888876 8999999887
Q ss_pred H
Q 025857 193 V 193 (247)
Q Consensus 193 ~ 193 (247)
.
T Consensus 511 L 511 (608)
T PRK14725 511 L 511 (608)
T ss_pred c
Confidence 4
No 293
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=24.33 E-value=1e+02 Score=28.28 Aligned_cols=41 Identities=15% Similarity=0.141 Sum_probs=28.1
Q ss_pred hhhhhcccCC-CceEEE-EcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 025857 149 ENIVASFQGS-GKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (247)
Q Consensus 149 ENlIA~~q~~-~~~lia-~v~~~~EA~val~~LE~G~DGVll~~~d~~ 194 (247)
..+|++++.. +-+|.. .|++.++++ ..++.|||||+ ||.|+
T Consensus 219 ~~~V~~~h~~~gl~V~~WTVN~~~~~~---~l~~~GVDgIi--TD~P~ 261 (263)
T cd08580 219 PAAVDCFRRNSKVKIVLFGINTADDYR---LAKCLGADAVM--VDSPA 261 (263)
T ss_pred HHHHHHHHhcCCcEEEEEEeCCHHHHH---HHHHcCCCEEE--eCCcc
Confidence 3567777776 666554 457777766 56788999998 55443
No 294
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=24.11 E-value=5.7e+02 Score=24.15 Aligned_cols=135 Identities=12% Similarity=0.165 Sum_probs=81.8
Q ss_pred EEe--CchhHHHHHHHhCCcEEEecCcc-----hHHHhhc------cceeEEeeeeecCC----ceecCCCCeEEEEEEe
Q 025857 55 IWT--ESKQVMTAAVERGWNTFVFLSEN-----QQLAIDW------STIALLDPLFIKEG----EVYDSGDRRVGSIIEV 117 (247)
Q Consensus 55 iW~--~~KevvT~ALEsG~d~~v~~~~~-----~e~~~~l------g~i~~i~pl~i~~g----~~~~~~g~~va~~~~I 117 (247)
.|. -+.=.+.-+--+|+|-++..-|| .-....| ++..++.|.. .+. +++ .-|.++-..--|
T Consensus 21 lw~~l~~p~~~Ei~A~aGfDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvVR~p~-g~~~~Ikq~L-D~GAqtlliPmV 98 (255)
T COG3836 21 LWLSLPDPYMAEILATAGFDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVVRPPV-GDPVMIKQLL-DIGAQTLLIPMV 98 (255)
T ss_pred eeecCCcHHHHHHHHhcCCCEEEecccccCccHHHHHHHHHHhhccCCCCeeeCCC-CCHHHHHHHH-ccccceeeeecc
Confidence 355 34445555667899998876555 2222222 4555555411 111 222 235566667788
Q ss_pred cChhhHhhhccccCC-------CCeEEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhh-cccCeEEEe
Q 025857 118 STPQELQQLQPADGQ-------AENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALE-QGLGGIVLK 189 (247)
Q Consensus 118 ~~~e~le~a~~~~~~-------~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE-~G~DGVll~ 189 (247)
.+.|+-+.+....+. .....-...-|. ++.+-++.. +.++-+++.+.|.+--.-.=.|+. -|+|||.+-
T Consensus 99 ~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~--~i~dyl~~A-n~~~~~lvqiEtr~gl~nLDaIaaveGVDgvFiG 175 (255)
T COG3836 99 DTAEQARQAVAATRYPPLGERGVGSALARASRFG--RIADYLAQA-NDEICLLVQIETRAGLDNLDAIAAVEGVDGVFIG 175 (255)
T ss_pred CCHHHHHHHHHhccCCCCCccccchhhhhhhhcC--CHHHHHHhc-ccceEEEEEEccHHHHHHHHHHHccCCCCeEEEC
Confidence 899988887665542 111233345788 888888874 556678888887654444334444 499999999
Q ss_pred cCCHH
Q 025857 190 VEDVK 194 (247)
Q Consensus 190 ~~d~~ 194 (247)
|.|.+
T Consensus 176 PaDLa 180 (255)
T COG3836 176 PADLA 180 (255)
T ss_pred HHHHH
Confidence 98744
No 295
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=24.04 E-value=2.4e+02 Score=26.52 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=25.8
Q ss_pred HHH-HHHHHHhhcccCeEEEe-c-CCHHHHHHHHHhhc
Q 025857 170 SEA-QIFLEALEQGLGGIVLK-V-EDVKAVLALKEYFD 204 (247)
Q Consensus 170 ~EA-~val~~LE~G~DGVll~-~-~d~~ev~~l~~~~~ 204 (247)
+|| +-+---.|.|+|+|.+. + .|++++.++.+.+.
T Consensus 166 deAI~Ra~aY~eAGAD~ifv~~~~~~~~ei~~~~~~~~ 203 (290)
T TIGR02321 166 QEAVRRGQAYEEAGADAILIHSRQKTPDEILAFVKSWP 203 (290)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhcC
Confidence 444 33445578999999998 3 89999888877653
No 296
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=24.00 E-value=1e+02 Score=28.21 Aligned_cols=30 Identities=7% Similarity=0.050 Sum_probs=25.7
Q ss_pred CC-CcEEEEEe-CchhHHHHHHHhCCcEEEec
Q 025857 48 SK-PKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (247)
Q Consensus 48 ~~-~K~vWiW~-~~KevvT~ALEsG~d~~v~~ 77 (247)
.+ ..+|++|| .+++.|..-++-|+|+|+..
T Consensus 227 ~~~gl~V~~WTVN~~~~~~~l~~~GVDgIiTD 258 (263)
T cd08580 227 RNSKVKIVLFGINTADDYRLAKCLGADAVMVD 258 (263)
T ss_pred hcCCcEEEEEEeCCHHHHHHHHHcCCCEEEeC
Confidence 34 67899999 67899999999999999964
No 297
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=23.86 E-value=2.3e+02 Score=24.16 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=18.4
Q ss_pred HHHHHHHHhhcccCeEEEecCCHH
Q 025857 171 EAQIFLEALEQGLGGIVLKVEDVK 194 (247)
Q Consensus 171 EA~val~~LE~G~DGVll~~~d~~ 194 (247)
+.+..-..+++++||+++.|.+++
T Consensus 44 ~~~~i~~l~~~~vDgiIi~~~~~~ 67 (271)
T cd06314 44 QLRMLEDLIAEGVDGIAISPIDPK 67 (271)
T ss_pred HHHHHHHHHhcCCCEEEEecCChh
Confidence 555555677899999999987765
No 298
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=23.82 E-value=4e+02 Score=21.64 Aligned_cols=66 Identities=12% Similarity=0.053 Sum_probs=37.1
Q ss_pred CCCeEEEecCCCe--eechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 025857 132 QAENIVIDLPDWQ--VIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (247)
Q Consensus 132 ~~~~vVv~~~DWt--iIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~ 200 (247)
..+.++++..-+. -+.+-..+.... ...++..... .+......+++.|+++++.+|-+..++.+..
T Consensus 44 ~~d~vl~d~~~~~~~g~~~~~~l~~~~--~~~ii~lt~~-~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i 111 (232)
T PRK10955 44 SIDLLLLDVMMPKKNGIDTLKELRQTH--QTPVIMLTAR-GSELDRVLGLELGADDYLPKPFNDRELVARI 111 (232)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHhcC--CCcEEEEECC-CCHHHHHHHHHcCCCEEEcCCCCHHHHHHHH
Confidence 4677777643222 222222222211 2445554432 2334556788999999999999988765443
No 299
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=23.64 E-value=4.8e+02 Score=24.23 Aligned_cols=56 Identities=18% Similarity=0.252 Sum_probs=39.8
Q ss_pred echhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEE--EecCCHHH-HHHHHHh
Q 025857 146 IPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIV--LKVEDVKA-VLALKEY 202 (247)
Q Consensus 146 IPlENlIA~~q--~~~~~lia~v~~~~EA~val~~LE~G~DGVl--l~~~d~~e-v~~l~~~ 202 (247)
..+++++...- +.+.-++.++++. ||..++.++..|-.|++ ++.+|+.+ +.+|..+
T Consensus 191 ~~~~~~l~~aLR~~pD~iivGEiR~~-ea~~~l~a~~tGh~G~~tTiHa~~~~~ai~Rl~~l 251 (299)
T TIGR02782 191 ISMTRLLKATLRLRPDRIIVGEVRGG-EALDLLKAWNTGHPGGIATIHANNAKAALDRLEQL 251 (299)
T ss_pred CCHHHHHHHHhcCCCCEEEEeccCCH-HHHHHHHHHHcCCCCeEEeeccCCHHHHHHHHHHH
Confidence 37777776532 3344478899997 57788999999999887 78888665 4444443
No 300
>PHA02587 30 DNA ligase; Provisional
Probab=23.58 E-value=1.7e+02 Score=29.26 Aligned_cols=28 Identities=36% Similarity=0.544 Sum_probs=23.2
Q ss_pred EcCCHHHHHHHH-HHhhcccCeEEEecCC
Q 025857 165 ISKTPSEAQIFL-EALEQGLGGIVLKVED 192 (247)
Q Consensus 165 ~v~~~~EA~val-~~LE~G~DGVll~~~d 192 (247)
.++|.+|++.++ .+.+.|..|||++..|
T Consensus 318 ~~~~~ee~~~~~~~a~~~G~EGimlK~~d 346 (488)
T PHA02587 318 VVNNLEEAKEIYKRYVDQGLEGIILKNTD 346 (488)
T ss_pred EcCCHHHHHHHHHHHHhCCCCeEEEECCC
Confidence 468899987765 6889999999999765
No 301
>TIGR03586 PseI pseudaminic acid synthase.
Probab=23.52 E-value=5e+02 Score=24.86 Aligned_cols=125 Identities=16% Similarity=0.090 Sum_probs=77.8
Q ss_pred chhHHHHHHHhCCcEEEecCcchHHHh-------------hccc---eeEEeeeee--cC-Cce---ecCCCCeEEEEEE
Q 025857 59 SKQVMTAAVERGWNTFVFLSENQQLAI-------------DWST---IALLDPLFI--KE-GEV---YDSGDRRVGSIIE 116 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~~~~~e~~~-------------~lg~---i~~i~pl~i--~~-g~~---~~~~g~~va~~~~ 116 (247)
-|+++.+|-|+|+|+|=|.....+..- .|.. ...+.-+.+ +. ..+ .+..| +-++..
T Consensus 19 A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~G--i~~~st 96 (327)
T TIGR03586 19 ALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELG--LTIFSS 96 (327)
T ss_pred HHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhC--CcEEEc
Confidence 489999999999998777643222210 0100 000000000 00 011 12233 346778
Q ss_pred ecChhhHhhhccccCCCCeEEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhh-cccCeEEE
Q 025857 117 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALE-QGLGGIVL 188 (247)
Q Consensus 117 I~~~e~le~a~~~~~~~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE-~G~DGVll 188 (247)
+.|.++++.+... ..+.+=|-..|=+.+||=.-+|+. +...-|=....+.+|-+-|++.++ .|..-|+|
T Consensus 97 pfd~~svd~l~~~--~v~~~KI~S~~~~n~~LL~~va~~-gkPvilstG~~t~~Ei~~Av~~i~~~g~~~i~L 166 (327)
T TIGR03586 97 PFDETAVDFLESL--DVPAYKIASFEITDLPLIRYVAKT-GKPIIMSTGIATLEEIQEAVEACREAGCKDLVL 166 (327)
T ss_pred cCCHHHHHHHHHc--CCCEEEECCccccCHHHHHHHHhc-CCcEEEECCCCCHHHHHHHHHHHHHCCCCcEEE
Confidence 8899998888654 356777788899999998888874 333333334579999999999986 68866776
No 302
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=23.49 E-value=1.8e+02 Score=26.11 Aligned_cols=42 Identities=21% Similarity=0.131 Sum_probs=31.3
Q ss_pred eEEEEcCCHHHHHHHHHHhhcc-cCeEEEecCCHHHHHHHHHhhcc
Q 025857 161 TVFAISKTPSEAQIFLEALEQG-LGGIVLKVEDVKAVLALKEYFDG 205 (247)
Q Consensus 161 ~lia~v~~~~EA~val~~LE~G-~DGVll~~~d~~ev~~l~~~~~~ 205 (247)
.+-..+.+.++|. ++++.| +|||.+++-+++++.....+...
T Consensus 186 ~idve~~~~~~~~---~~~~~~~~d~irlDs~~~~~~~~~~~~~~~ 228 (281)
T cd00516 186 LIDVEVDTLEEAL---EAAKAGGADGIRLDSGSPEELDPAVLILKA 228 (281)
T ss_pred EEEEEeCCHHHHH---HHHhcCCCCEEEeCCCChHHHHHHHHHHHH
Confidence 4566677777775 555666 99999999999888777666543
No 303
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=22.96 E-value=2.9e+02 Score=23.18 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=16.8
Q ss_pred HHHHHHHHhhcccCeEEEecCCHH
Q 025857 171 EAQIFLEALEQGLGGIVLKVEDVK 194 (247)
Q Consensus 171 EA~val~~LE~G~DGVll~~~d~~ 194 (247)
+.+..-..+++|+|||++.+.+..
T Consensus 44 ~~~~~~~l~~~~vdgiIi~~~~~~ 67 (265)
T cd06299 44 ENRYLDNLLSQRVDGIIVVPHEQS 67 (265)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCC
Confidence 445555667889999999876533
No 304
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=22.73 E-value=1.1e+02 Score=27.56 Aligned_cols=36 Identities=17% Similarity=0.398 Sum_probs=25.6
Q ss_pred hhhhhcccCCCceEEE-EcCCHHHHHHHHHHhhcccCeEE
Q 025857 149 ENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIV 187 (247)
Q Consensus 149 ENlIA~~q~~~~~lia-~v~~~~EA~val~~LE~G~DGVl 187 (247)
+.+|+.++..+-++++ .|++.++++. .++.|+|||+
T Consensus 221 ~~~v~~~~~~G~~v~vWTVNd~~~~~~---l~~~GVdgIi 257 (264)
T cd08575 221 PNLFDHLRKRGIQVYLWVLNDEEDFEE---AFDLGADGVM 257 (264)
T ss_pred HHHHHHHHhcCCcEEEEEECCHHHHHH---HHhcCCCEEE
Confidence 4677777766666555 4677777774 5678999987
No 305
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=22.64 E-value=2.7e+02 Score=19.21 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhcccCeEEEecCCHHHHHH
Q 025857 170 SEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (247)
Q Consensus 170 ~EA~val~~LE~G~DGVll~~~d~~ev~~ 198 (247)
.........++.|+++++.+|-+..++.+
T Consensus 90 ~~~~~~~~~~~~g~~~~i~~p~~~~~l~~ 118 (129)
T PRK10610 90 AKKENIIAAAQAGASGYVVKPFTAATLEE 118 (129)
T ss_pred CCHHHHHHHHHhCCCeEEECCCCHHHHHH
Confidence 33445668889999999999998876643
No 306
>PLN02334 ribulose-phosphate 3-epimerase
Probab=22.63 E-value=5.2e+02 Score=22.58 Aligned_cols=109 Identities=12% Similarity=0.132 Sum_probs=58.6
Q ss_pred hhHHHHHHHhCCcEEEecCcch----------HHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccc
Q 025857 60 KQVMTAAVERGWNTFVFLSENQ----------QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~~~~----------e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~ 129 (247)
.+.++.+++.|++.|=++-.|. +.++++.++. ++.+.+..-|.++++....+ .
T Consensus 23 ~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~~----------------~~~~~vhlmv~~p~d~~~~~-~ 85 (229)
T PLN02334 23 AEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKHT----------------DAPLDCHLMVTNPEDYVPDF-A 85 (229)
T ss_pred HHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhcC----------------CCcEEEEeccCCHHHHHHHH-H
Confidence 5688999999999876642111 2333333331 22345667777777644444 2
Q ss_pred cCCCCeEEEecC-CCeeechhhhhhcccCCCceEEEEcC--CHHHHHHHHHHhhcc-cCeEEE
Q 025857 130 DGQAENIVIDLP-DWQVIPAENIVASFQGSGKTVFAISK--TPSEAQIFLEALEQG-LGGIVL 188 (247)
Q Consensus 130 ~~~~~~vVv~~~-DWtiIPlENlIA~~q~~~~~lia~v~--~~~EA~val~~LE~G-~DGVll 188 (247)
...++.+.+... +-.--|.+.+=. +.+.+.++-..++ ++.| .+...++.| +|-|++
T Consensus 86 ~~gad~v~vH~~q~~~d~~~~~~~~-i~~~g~~iGls~~~~t~~~--~~~~~~~~~~~Dyi~~ 145 (229)
T PLN02334 86 KAGASIFTFHIEQASTIHLHRLIQQ-IKSAGMKAGVVLNPGTPVE--AVEPVVEKGLVDMVLV 145 (229)
T ss_pred HcCCCEEEEeeccccchhHHHHHHH-HHHCCCeEEEEECCCCCHH--HHHHHHhccCCCEEEE
Confidence 235788766665 223345444433 3344444444444 3333 333455664 998855
No 307
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=22.58 E-value=3.5e+02 Score=26.34 Aligned_cols=106 Identities=12% Similarity=0.128 Sum_probs=63.9
Q ss_pred CchhHHHHHHHhCCcEEEecCcc------hHHHhhccceeEEee--e--eec-C----CceecCCCCeEEEEEEecChhh
Q 025857 58 ESKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLDP--L--FIK-E----GEVYDSGDRRVGSIIEVSTPQE 122 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~~~------~e~~~~lg~i~~i~p--l--~i~-~----g~~~~~~g~~va~~~~I~~~e~ 122 (247)
+..+++..|-+-++|.+++.+|+ ++..+++| |..+.| . .+. + .+++...|-+++-|..+.+.++
T Consensus 56 d~~~l~~~a~~~~iD~Vv~g~E~~l~~glad~~~~~G-ip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~~e 134 (426)
T PRK13789 56 DKSSVQSFLKSNPFDLIVVGPEDPLVAGFADWAAELG-IPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKTFTEYSS 134 (426)
T ss_pred CHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHHHcC-CCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCeEeeCCHHH
Confidence 34667777888899999987654 23334454 555555 1 111 2 2344666778887888888776
Q ss_pred HhhhccccCCCCeEEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhh
Q 025857 123 LQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALE 180 (247)
Q Consensus 123 le~a~~~~~~~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE 180 (247)
....... ..-++||...+ + + ++.+ +..+.|.+|++-++.-+-
T Consensus 135 a~~~~~~--~~~PvVVKp~~--------~-~---~gkG--V~vv~~~eel~~a~~~~~ 176 (426)
T PRK13789 135 SLSYLES--EMLPIVIKADG--------L-A---AGKG--VTVATEKKMAKRALKEIF 176 (426)
T ss_pred HHHHHHh--cCCCEEEEeCC--------C-C---CCCc--EEEECCHHHHHHHHHHHH
Confidence 5444321 12255655544 1 2 2233 678899999999888753
No 308
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=22.21 E-value=1.9e+02 Score=25.30 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=20.7
Q ss_pred HHHHHHhhcccCeEEEecCCHHHHH
Q 025857 173 QIFLEALEQGLGGIVLKVEDVKAVL 197 (247)
Q Consensus 173 ~val~~LE~G~DGVll~~~d~~ev~ 197 (247)
+++-.+.+.|++|++..+..++.++
T Consensus 133 ~~~~~a~~~g~~G~V~~~~~~~~i~ 157 (216)
T cd04725 133 RLAKLAREAGVDGVVCGATEPEALR 157 (216)
T ss_pred HHHHHHHHHCCCEEEECCcchHHHH
Confidence 4456778899999999999988773
No 309
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=22.12 E-value=94 Score=26.23 Aligned_cols=31 Identities=19% Similarity=0.391 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 025857 169 PSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (247)
Q Consensus 169 ~~EA~val~~LE~G~DGVll~~~d~~ev~~l 199 (247)
.++.+.+=..+.+|+|||++.|-|+.....+
T Consensus 42 ~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~ 72 (257)
T PF13407_consen 42 EEQIEQIEQAISQGVDGIIVSPVDPDSLAPF 72 (257)
T ss_dssp HHHHHHHHHHHHTTESEEEEESSSTTTTHHH
T ss_pred HHHHHHHHHHHHhcCCEEEecCCCHHHHHHH
Confidence 4455555667799999999999988654433
No 310
>cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline
Probab=21.96 E-value=1.8e+02 Score=27.22 Aligned_cols=47 Identities=17% Similarity=0.341 Sum_probs=32.9
Q ss_pred hhhhhhcccCCCc-----eEEEE-cCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 025857 148 AENIVASFQGSGK-----TVFAI-SKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (247)
Q Consensus 148 lENlIA~~q~~~~-----~lia~-v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l 199 (247)
.+.++.+++..+. +++.- +++.++++ ..++.|+|||+ ++.|+.+.++
T Consensus 193 ~~~lv~~~~~rd~~g~i~kV~vWTVn~~~~~~---~ll~~GVDGII--TD~P~~i~~~ 245 (265)
T cd08576 193 CARLREAIKKRDTPGYLGKVYGWTSDKGSSVR---KLLRLGVDGII--TNYPKRIIDV 245 (265)
T ss_pred cHHHHHHHHHcCCCCcCCeEEEEeCCCHHHHH---HHHhcCCCEEE--ECCHHHHHHH
Confidence 4778887776666 55554 56666555 56788999988 8888866544
No 311
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=21.90 E-value=4.8e+02 Score=21.89 Aligned_cols=125 Identities=10% Similarity=0.077 Sum_probs=59.1
Q ss_pred chhHHHHH-HHhCCcEEEecCcchHHHhhccceeEEeeeeecCC------ceecCCCCeEEEEEEecChhhHhhhccccC
Q 025857 59 SKQVMTAA-VERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEG------EVYDSGDRRVGSIIEVSTPQELQQLQPADG 131 (247)
Q Consensus 59 ~KevvT~A-LEsG~d~~v~~~~~~e~~~~lg~i~~i~pl~i~~g------~~~~~~g~~va~~~~I~~~e~le~a~~~~~ 131 (247)
-.+.+... .+.|+|-||-.-..++..++.-++.++.- -+.+- ..++..+.++|++..-.--.+++......
T Consensus 22 ~v~~a~~~~~~~g~dViIsRG~ta~~lr~~~~iPVV~I-~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll- 99 (176)
T PF06506_consen 22 AVEEARQLLESEGADVIISRGGTAELLRKHVSIPVVEI-PISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELL- 99 (176)
T ss_dssp HHHHHHHHHTTTT-SEEEEEHHHHHHHHCC-SS-EEEE----HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHH-
T ss_pred HHHHHHHhhHhcCCeEEEECCHHHHHHHHhCCCCEEEE-CCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHh-
Confidence 45566666 67899988877566888888778888763 11111 11234456666655433222233333222
Q ss_pred CCCeEEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d 192 (247)
+.+..+..+.++.= +++.|-++...+..++..-... .+. +-+.|..+|++.+..
T Consensus 100 ~~~i~~~~~~~~~e--~~~~i~~~~~~G~~viVGg~~~--~~~---A~~~gl~~v~i~sg~ 153 (176)
T PF06506_consen 100 GVDIKIYPYDSEEE--IEAAIKQAKAEGVDVIVGGGVV--CRL---ARKLGLPGVLIESGE 153 (176)
T ss_dssp T-EEEEEEESSHHH--HHHHHHHHHHTT--EEEESHHH--HHH---HHHTTSEEEESS--H
T ss_pred CCceEEEEECCHHH--HHHHHHHHHHcCCcEEECCHHH--HHH---HHHcCCcEEEEEecH
Confidence 22333334444442 4455555444444433333221 122 245677777777743
No 312
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=21.83 E-value=5.3e+02 Score=22.33 Aligned_cols=27 Identities=11% Similarity=0.159 Sum_probs=21.7
Q ss_pred CchhHHHHHHHhCCcEEEecCcchHHH
Q 025857 58 ESKQVMTAAVERGWNTFVFLSENQQLA 84 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~~~~e~~ 84 (247)
+-.+++..+.|.|++++.+++.....+
T Consensus 22 d~~~~~~~~~~~g~~av~v~~~~~~~~ 48 (235)
T cd00958 22 DPEETVKLAAEGGADAVALTKGIARAY 48 (235)
T ss_pred CHHHHHHHHHhcCCCEEEeChHHHHhc
Confidence 447899999999999999986655553
No 313
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=21.78 E-value=2.9e+02 Score=24.37 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=18.7
Q ss_pred HHHHHHHHhhcccCeEEEecCCHHHH
Q 025857 171 EAQIFLEALEQGLGGIVLKVEDVKAV 196 (247)
Q Consensus 171 EA~val~~LE~G~DGVll~~~d~~ev 196 (247)
+.+..-..+.+|+||+++.|.|+..+
T Consensus 46 q~~~i~~l~~~~vdgiii~~~~~~~~ 71 (303)
T cd01539 46 QNEQIDTALAKGVDLLAVNLVDPTAA 71 (303)
T ss_pred HHHHHHHHHHcCCCEEEEecCchhhH
Confidence 33444557899999999988776533
No 314
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=21.70 E-value=1.9e+02 Score=26.99 Aligned_cols=70 Identities=14% Similarity=0.083 Sum_probs=42.4
Q ss_pred EEEEecChhhHhhhccccCCCCeEEEecCCCeeechhhhhhcccCCCceEE-EEcCCHHHHHHHHHHhhcccCeEEEec
Q 025857 113 SIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVF-AISKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 113 ~~~~I~~~e~le~a~~~~~~~~~vVv~~~DWtiIPlENlIA~~q~~~~~li-a~v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
+-+++.+.++.+.+. ...+||+.++ .+++|.+-...+..+..+. ...... ..+-+-+.++.|+|||.+..
T Consensus 191 Igvsv~tleea~~A~--~~gaDyI~lD-----~~~~e~l~~~~~~~~~~i~i~AiGGI-t~~ni~~~a~~Gvd~IAvg~ 261 (277)
T PRK08072 191 IEVETETEEQVREAV--AAGADIIMFD-----NRTPDEIREFVKLVPSAIVTEASGGI-TLENLPAYGGTGVDYISLGF 261 (277)
T ss_pred EEEEeCCHHHHHHHH--HcCCCEEEEC-----CCCHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHHcCCCEEEECh
Confidence 456677887777665 3468998874 3777877665443322222 222322 22334567789999998754
No 315
>TIGR03275 methan_mark_8 putative methanogenesis marker protein 8. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=21.58 E-value=5.4e+02 Score=24.37 Aligned_cols=130 Identities=17% Similarity=0.294 Sum_probs=78.4
Q ss_pred chhHHHHHHHhC-CcEEEecCcchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEec-ChhhHhhhccccCCCCeE
Q 025857 59 SKQVMTAAVERG-WNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENI 136 (247)
Q Consensus 59 ~KevvT~ALEsG-~d~~v~~~~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~-~~e~le~a~~~~~~~~~v 136 (247)
.-|++.+||.+| .|+.|.-.|-+ |. +..++.+++.+-|-+.-.+++-+ =||-++.+- ...-+
T Consensus 77 ~SEi~~t~l~~g~iDaaVivcDga------GT------VI~~nP~lVQGigGR~SGLv~TtPIpevi~~Ie----~~gGi 140 (259)
T TIGR03275 77 ASEILMTALKSGFIDAAVIVCDGA------GT------VITTNPALVQGLGGRISGLIETSPIPEVIEKIE----DEGGI 140 (259)
T ss_pred HHHHHHHHHhcCCcceEEEEecCc------Ce------EEeCCHHHHhhccceeeeeeeccccHHHHHHHH----hcCCE
Confidence 478999999999 78766432211 22 22234456666665655555443 233333333 23346
Q ss_pred EEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHh-hcccCeEEEec--C--CHHHHHHHHHhhc
Q 025857 137 VIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEAL-EQGLGGIVLKV--E--DVKAVLALKEYFD 204 (247)
Q Consensus 137 Vv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~L-E~G~DGVll~~--~--d~~ev~~l~~~~~ 204 (247)
|++..+-+|=|.+-+--++.---.+|...+.++++|+..-+.= |+|++=+++.. . +.++..++.++.+
T Consensus 141 VLd~~tA~IDq~~Gv~~Aie~Gyk~IaVTv~~~~~a~~iRe~e~~~~~~~~if~VHtTGis~eea~~~~~~aD 213 (259)
T TIGR03275 141 VLDPDTATIDQIKGVEKAIELGYKKIAVTVADAEDAKAIRELESESGIDIIIFAVHTTGIDREDAEEVVQYAD 213 (259)
T ss_pred EeCCccccccHHHHHHHHHHcCCceEEEEecCHHHHHHHHHhccccCCcEEEEEEECCCCCHHHHHHHHHhhh
Confidence 7888888888998887776654557777788999998755432 23777666543 2 3455555555544
No 316
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=21.46 E-value=3.7e+02 Score=20.35 Aligned_cols=108 Identities=19% Similarity=0.138 Sum_probs=64.5
Q ss_pred cEEEEEeCchhHHHHHHHhCCcEEEecCc--chHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecC-hhhHhhhc
Q 025857 51 KRVWIWTESKQVMTAAVERGWNTFVFLSE--NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST-PQELQQLQ 127 (247)
Q Consensus 51 K~vWiW~~~KevvT~ALEsG~d~~v~~~~--~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~-~e~le~a~ 127 (247)
.++++=+.+.+-...|.+-|++.++..++ ..+.++++. .|..+-+.++..+ ++.++.+.
T Consensus 15 ~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~------------------~~~~~d~vid~~g~~~~~~~~~ 76 (130)
T PF00107_consen 15 AKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELT------------------GGRGVDVVIDCVGSGDTLQEAI 76 (130)
T ss_dssp SEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHT------------------TTSSEEEEEESSSSHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHhhccccccccccccccccccccc------------------ccccceEEEEecCcHHHHHHHH
Confidence 34556565666666677777777766532 122222211 1123446667776 88888886
Q ss_pred cccCCCC-eEEEecC--CCeeechhhhhhcccCCCceEEEEc-CCHHHHHHHHHHhh
Q 025857 128 PADGQAE-NIVIDLP--DWQVIPAENIVASFQGSGKTVFAIS-KTPSEAQIFLEALE 180 (247)
Q Consensus 128 ~~~~~~~-~vVv~~~--DWtiIPlENlIA~~q~~~~~lia~v-~~~~EA~val~~LE 180 (247)
...+... .+++-.. ++..+|.-+++.. +.++.... .+.+|.+.+++-|.
T Consensus 77 ~~l~~~G~~v~vg~~~~~~~~~~~~~~~~~----~~~i~g~~~~~~~~~~~~~~~la 129 (130)
T PF00107_consen 77 KLLRPGGRIVVVGVYGGDPISFNLMNLMFK----EITIRGSWGGSPEDFQEALQLLA 129 (130)
T ss_dssp HHEEEEEEEEEESSTSTSEEEEEHHHHHHT----TEEEEEESSGGHHHHHHHHHHHH
T ss_pred HHhccCCEEEEEEccCCCCCCCCHHHHHhC----CcEEEEEccCCHHHHHHHHHHhc
Confidence 6665544 4444444 5778888888874 34555554 45688888887664
No 317
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=21.32 E-value=3.5e+02 Score=27.27 Aligned_cols=117 Identities=17% Similarity=0.239 Sum_probs=74.3
Q ss_pred CchhHHHHHHHhCCcEEEecCcc---hHHHhhc--cceeEEee----eeecC-----CceecCCCCeEEEEEEecChhhH
Q 025857 58 ESKQVMTAAVERGWNTFVFLSEN---QQLAIDW--STIALLDP----LFIKE-----GEVYDSGDRRVGSIIEVSTPQEL 123 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~~~---~e~~~~l--g~i~~i~p----l~i~~-----g~~~~~~g~~va~~~~I~~~e~l 123 (247)
+-..++.-|.+.++|=+++.||. ...+..+ .-|.++.| -.+++ .+++...|-+++.|-..++.++.
T Consensus 51 ~~~~lv~fA~~~~idl~vVGPE~pL~~GvvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IPta~y~~f~~~e~a 130 (428)
T COG0151 51 DHEALVAFAKEKNVDLVVVGPEAPLVAGVVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPTAEYEVFTDPEEA 130 (428)
T ss_pred CHHHHHHHHHHcCCCEEEECCcHHHhhhhHHHHHHCCCceeCcCHHHHHHHhhHHHHHHHHHHcCCCcccccccCCHHHH
Confidence 46889999999999998887663 2333343 34677777 11222 36677888888999888877654
Q ss_pred hhhccccCCCCeEEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHH-Hhhc---ccCe--EEEec
Q 025857 124 QQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLE-ALEQ---GLGG--IVLKV 190 (247)
Q Consensus 124 e~a~~~~~~~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~-~LE~---G~DG--Vll~~ 190 (247)
..-.. +...++||...+ +|+ + |=+.++.+.+||+.++. +|+. |.-| ||+..
T Consensus 131 ~ayi~--~~g~piVVKadG---------Laa--G---KGV~V~~~~eeA~~a~~~~l~~~~fg~~g~~VVIEE 187 (428)
T COG0151 131 KAYID--EKGAPIVVKADG---------LAA--G---KGVIVAMTLEEAEAAVDEMLEGNAFGSAGARVVIEE 187 (428)
T ss_pred HHHHH--HcCCCEEEeccc---------ccC--C---CCeEEcCCHHHHHHHHHHHHhhccccCCCCcEEEEe
Confidence 33322 233446766654 232 3 22677888999998765 5665 5233 66543
No 318
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=20.82 E-value=1.6e+02 Score=26.32 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 025857 170 SEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (247)
Q Consensus 170 ~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~~ 204 (247)
.+.+..-..+.+|+|||++.|.|+..+....+.+.
T Consensus 79 ~Q~~~i~~~ia~~~daIiv~~~d~~~~~~~v~~a~ 113 (322)
T COG1879 79 KQIAQIEDLIAQGVDAIIINPVDPDALTPAVKKAK 113 (322)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCChhhhHHHHHHHH
Confidence 35555556679999999999999997766555443
No 319
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=20.78 E-value=1.3e+02 Score=26.87 Aligned_cols=42 Identities=7% Similarity=0.195 Sum_probs=29.5
Q ss_pred CCeeechhhhhhcccCCCceEEEE-cCCHHHHHHHHHHhhcccCeEE
Q 025857 142 DWQVIPAENIVASFQGSGKTVFAI-SKTPSEAQIFLEALEQGLGGIV 187 (247)
Q Consensus 142 DWtiIPlENlIA~~q~~~~~lia~-v~~~~EA~val~~LE~G~DGVl 187 (247)
.+..+- +.+|.+++..+-.+++- |++.++++.++ +.|+|||+
T Consensus 207 ~~~~~~-~~~v~~~~~~g~~v~~WTVn~~~~~~~l~---~~GVdgIi 249 (252)
T cd08574 207 EYSQLS-AQEIREYSKANISVNLYVVNEPWLYSLLW---CSGVQSVT 249 (252)
T ss_pred CcccCC-HHHHHHHHHCCCEEEEEccCCHHHHHHHH---HcCCCEEe
Confidence 344444 45777777777776665 68888877655 56999987
No 320
>PF09872 DUF2099: Uncharacterized protein conserved in archaea (DUF2099); InterPro: IPR009181 The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=20.74 E-value=6.8e+02 Score=23.72 Aligned_cols=129 Identities=16% Similarity=0.243 Sum_probs=73.1
Q ss_pred chhHHHHHHHhC-CcEEEecCcchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeEE
Q 025857 59 SKQVMTAAVERG-WNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 137 (247)
Q Consensus 59 ~KevvT~ALEsG-~d~~v~~~~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vV 137 (247)
--|++.+||.+| .|+.|.-.|-+ |. +..++.+++.+-|-+.-.+++-+=-+ .....-....-+|
T Consensus 77 aSEil~t~l~~g~iDaaV~vcdGA------GT------VI~~~P~lVQGiGGrmSGLv~T~PI~---evi~~Ie~~ggiV 141 (258)
T PF09872_consen 77 ASEILMTALRRGLIDAAVIVCDGA------GT------VITTNPELVQGIGGRMSGLVSTTPIP---EVIERIEEKGGIV 141 (258)
T ss_pred HHHHHHHHHhcCCcceEEEEecCC------Ce------EEeCCHHHHhhccceeeeeeeccchH---HHHHHHHhcCCEE
Confidence 479999999999 78866432211 11 22234466666665555554443211 1211112334457
Q ss_pred EecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhh--cccCeEEEecC----CHHHHHHHHHhh
Q 025857 138 IDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALE--QGLGGIVLKVE----DVKAVLALKEYF 203 (247)
Q Consensus 138 v~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE--~G~DGVll~~~----d~~ev~~l~~~~ 203 (247)
++..+-+|=|++-+--++..--.+|...+.++++|+..-+ || .|++=+++..- +.++...|.++.
T Consensus 142 Ld~~tA~IDq~~Gv~kAie~Gyk~IaVTV~~~~~A~~iRe-le~~~~~~~~if~VHtTGis~eeA~~l~~~~ 212 (258)
T PF09872_consen 142 LDPETARIDQVEGVKKAIEMGYKRIAVTVADAEDAKKIRE-LEKEEGVNIYIFGVHTTGISEEEAERLFEYA 212 (258)
T ss_pred eCCccccccHHHHHHHHHHcCCceEEEEecCHHHHHHHHH-hhccCCCceEEEEEEccCCCHHHHHHHHHHh
Confidence 7777788888888777665544567777788888776544 44 57776665432 234444444443
No 321
>cd07895 Adenylation_mRNA_capping Adenylation domain of GTP-dependent mRNA capping enzymes. RNA capping enzymes transfer GMP from GTP to the 5'-diphosphate end of nascent mRNAs to form a G(5')ppp(5')RNA cap structure. The RNA cap is found only in eukarya. RNA capping is chemically analogous to the first two steps of polynucleotide ligation. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. Structural studies reveal a shared structure for DNA ligases and capping enzymes, with a common catalytic core composed of an adenylation or nucleotidyltransferase domain and a C-terminal OB-fold domain containing conserved sequence motifs. The adenylation domain binds ATP and contains many active site residues.
Probab=20.71 E-value=89 Score=27.04 Aligned_cols=26 Identities=12% Similarity=0.241 Sum_probs=18.8
Q ss_pred HHHHHHHHHHh----hcccCeEEEecCCHH
Q 025857 169 PSEAQIFLEAL----EQGLGGIVLKVEDVK 194 (247)
Q Consensus 169 ~~EA~val~~L----E~G~DGVll~~~d~~ 194 (247)
.++.+..++.+ ++|.||+|+++.+.-
T Consensus 172 ~~~~~~~~~~~~~~~~~~~EGlIfk~~~~~ 201 (215)
T cd07895 172 LYKIEKLFEKIIPKLPHENDGLIFTPNDEP 201 (215)
T ss_pred HHhHHHHHHhccccCCCCCCCEEEccCCCC
Confidence 44555555544 999999999998644
No 322
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.62 E-value=1.7e+02 Score=24.82 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhcccCeEEEecCCHHH
Q 025857 170 SEAQIFLEALEQGLGGIVLKVEDVKA 195 (247)
Q Consensus 170 ~EA~val~~LE~G~DGVll~~~d~~e 195 (247)
.+.+..-..+++|+||+++.+.+.+.
T Consensus 45 ~~~~~i~~~~~~~~dgiIi~~~~~~~ 70 (271)
T cd06321 45 KQVSQIDNFIAAKVDLILLNAVDSKG 70 (271)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCChhH
Confidence 34444456678999999998877553
No 323
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=20.51 E-value=2.7e+02 Score=24.44 Aligned_cols=63 Identities=14% Similarity=0.285 Sum_probs=36.6
Q ss_pred CCeEEEecC--CCeeech-hhhhhcccCCCceEEEEcCCHHHHHHHHHHhhc--ccCeEEEecCCHHHHHHH
Q 025857 133 AENIVIDLP--DWQVIPA-ENIVASFQGSGKTVFAISKTPSEAQIFLEALEQ--GLGGIVLKVEDVKAVLAL 199 (247)
Q Consensus 133 ~~~vVv~~~--DWtiIPl-ENlIA~~q~~~~~lia~v~~~~EA~val~~LE~--G~DGVll~~~d~~ev~~l 199 (247)
.|.++++.. |..=+-+ ...+.+ +..+.+++......+. .+..++. |++|++.+..+++++.+.
T Consensus 53 ~DvvllDi~~p~~~G~~~~~~~i~~-~~p~~~vvvlt~~~~~---~~~~~~~~~Ga~G~l~K~~~~~~L~~a 120 (216)
T PRK10100 53 GSIILLDMMEADKKLIHYWQDTLSR-KNNNIKILLLNTPEDY---PYREIENWPHINGVFYAMEDQERVVNG 120 (216)
T ss_pred CCEEEEECCCCCccHHHHHHHHHHH-hCCCCcEEEEECCchh---HHHHHHHhcCCeEEEECCCCHHHHHHH
Confidence 566777654 4343322 111222 2334566666554442 3455554 999999999999987653
No 324
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=20.45 E-value=3.1e+02 Score=26.49 Aligned_cols=70 Identities=19% Similarity=0.133 Sum_probs=42.8
Q ss_pred ChhhHhhhccccCCCCeEEEecCC-------------CeeechhhhhhcccC--------CCceEEEEcCCHHHHHHHHH
Q 025857 119 TPQELQQLQPADGQAENIVIDLPD-------------WQVIPAENIVASFQG--------SGKTVFAISKTPSEAQIFLE 177 (247)
Q Consensus 119 ~~e~le~a~~~~~~~~~vVv~~~D-------------WtiIPlENlIA~~q~--------~~~~lia~v~~~~EA~val~ 177 (247)
+.++...+...+ .+|.++|++.+ |- +|....++.... .+..|++ +.-.....-++.
T Consensus 226 ~~~~~a~~~~~~-g~D~I~VsG~~Ggtg~~~~~~~~~~g-~pt~~~L~~v~~~~~~~~~~~~i~via-sGGI~~g~Dv~k 302 (392)
T cd02808 226 GEGDIAAGVAAA-GADFITIDGAEGGTGAAPLTFIDHVG-LPTELGLARAHQALVKNGLRDRVSLIA-SGGLRTGADVAK 302 (392)
T ss_pred CHHHHHHHHHHc-CCCEEEEeCCCCCCCCCcccccccCC-ccHHHHHHHHHHHHHHcCCCCCCeEEE-ECCCCCHHHHHH
Confidence 456655555433 38999988652 44 576666654431 2456665 344444445667
Q ss_pred HhhcccCeEEEecC
Q 025857 178 ALEQGLGGIVLKVE 191 (247)
Q Consensus 178 ~LE~G~DGVll~~~ 191 (247)
+|..|+|+|-+.+.
T Consensus 303 alaLGAd~V~ig~~ 316 (392)
T cd02808 303 ALALGADAVGIGTA 316 (392)
T ss_pred HHHcCCCeeeechH
Confidence 78889999987655
No 325
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=20.30 E-value=2.1e+02 Score=25.03 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=19.3
Q ss_pred CHHHHHHHHH-HhhcccCeEEEecCCHHHH
Q 025857 168 TPSEAQIFLE-ALEQGLGGIVLKVEDVKAV 196 (247)
Q Consensus 168 ~~~EA~val~-~LE~G~DGVll~~~d~~ev 196 (247)
+.++..-.++ .+++|+|||++.+.|...+
T Consensus 41 d~~~q~~~i~~l~~~~vdgiIi~~~~~~~~ 70 (302)
T TIGR02637 41 TAEGQIEVVNSLIAQKVDAIAISANDPDAL 70 (302)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCChHHH
Confidence 4444434444 4578999999998876654
No 326
>cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=20.22 E-value=4.5e+02 Score=24.29 Aligned_cols=45 Identities=20% Similarity=0.240 Sum_probs=27.6
Q ss_pred hhhhhhcccCCCceEEEE-cCCHH-----------HHHHHHHHhhcccCeEEEecCCHH
Q 025857 148 AENIVASFQGSGKTVFAI-SKTPS-----------EAQIFLEALEQGLGGIVLKVEDVK 194 (247)
Q Consensus 148 lENlIA~~q~~~~~lia~-v~~~~-----------EA~val~~LE~G~DGVll~~~d~~ 194 (247)
-+.++.+++..+-+|+.- +++.. +...+.-..+.|+|||+ ||.|+
T Consensus 239 ~~~~v~~a~~~Gl~v~vwTvn~~~~~~~~~~~~~~~~~~~~~~~~~GVdgIi--TD~P~ 295 (300)
T cd08604 239 QTNVVEKLQSANLTVYVEVLRNEFVSLAFDFFADPTVEINSYVQGAGVDGFI--TEFPA 295 (300)
T ss_pred chHHHHHHHHCCCEEEEEEecCCccccchhccCCHHHHHHHHHHHcCCCEEE--ecCch
Confidence 347888888877776665 45541 12222333467999987 45555
No 327
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=20.15 E-value=3.5e+02 Score=22.79 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=17.6
Q ss_pred CHHHH-HHHHHHhhcccCeEEEecCCHH
Q 025857 168 TPSEA-QIFLEALEQGLGGIVLKVEDVK 194 (247)
Q Consensus 168 ~~~EA-~val~~LE~G~DGVll~~~d~~ 194 (247)
+.++. +..-..+..++||+++.+.+.+
T Consensus 41 ~~~~~~~~i~~l~~~~vdgiii~~~~~~ 68 (272)
T cd06301 41 DVATQLSQVENFIAQGVDAIIVVPVDTA 68 (272)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCchh
Confidence 34433 4444556889999999886644
No 328
>cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. FcuR acts as an inducer of fucRRIAK and as a corepressor of another locus that regulates production of fucosylated glycans. FcuR and its close homologs in this group are a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes t
Probab=20.12 E-value=2.1e+02 Score=24.63 Aligned_cols=38 Identities=5% Similarity=-0.002 Sum_probs=22.5
Q ss_pred ccCCC-ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 025857 155 FQGSG-KTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (247)
Q Consensus 155 ~q~~~-~~lia~v~~~~EA~val~~LE~G~DGVll~~~d 192 (247)
++..+ -.++....+.++-+.++..+++.+|||++.+..
T Consensus 24 l~~~g~~~l~~~~~~~~~~~~~~~~~~~~vdGvIi~~~~ 62 (247)
T cd06276 24 LGKNAQVDLYFHHYNEDLFKNIISNTKGKYSGYVVMPHF 62 (247)
T ss_pred HHhcCcEEEEEEcCchHHHHHHHHHHhcCCCEEEEecCC
Confidence 33444 344443333244445566679999999997654
No 329
>PRK06739 pyruvate kinase; Validated
Probab=20.07 E-value=1.9e+02 Score=28.01 Aligned_cols=72 Identities=13% Similarity=0.248 Sum_probs=54.8
Q ss_pred ChhhHhhhccccCCCCeEEEecC--CCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 025857 119 TPQELQQLQPADGQAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (247)
Q Consensus 119 ~~e~le~a~~~~~~~~~vVv~~~--DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~ 193 (247)
|.++++.+. ....||+-+.|- .=.|..+-+++.+..+.+..|||-..+.+--+-.-++++. +|||++.--|.
T Consensus 167 D~~di~f~~--~~~vD~ia~SFVr~~~Dv~~~r~~l~~~g~~~~~IiaKIE~~~av~nl~eI~~~-sDgimVARGDL 240 (352)
T PRK06739 167 DKKDIQFLL--EEDVDFIACSFVRKPSHIKEIRDFIQQYKETSPNLIAKIETMEAIENFQDICKE-ADGIMIARGDL 240 (352)
T ss_pred HHHHHHHHH--HcCCCEEEECCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHh-cCEEEEECccc
Confidence 444544443 336888888873 4458888899987655577899999999999988899987 59999998874
No 330
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=20.04 E-value=2.2e+02 Score=26.29 Aligned_cols=71 Identities=13% Similarity=0.052 Sum_probs=43.5
Q ss_pred EEEEecChhhHhhhccccCCCCeEEEecCCCeeechhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 025857 113 SIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (247)
Q Consensus 113 ~~~~I~~~e~le~a~~~~~~~~~vVv~~~DWtiIPlENlIA~~q~~--~~~lia~v~~~~EA~val~~LE~G~DGVll~ 189 (247)
..+++.+.++...+.. ..+||+.++.-.++ .+..++..+.+. +..++|. .... .+.+.+.++.|+|||++.
T Consensus 186 IgVev~t~eea~~A~~--~gaD~I~ld~~~p~--~l~~~~~~~~~~~~~i~i~As-GGI~-~~ni~~~~~~Gvd~I~vs 258 (272)
T cd01573 186 IVVEVDSLEEALAAAE--AGADILQLDKFSPE--ELAELVPKLRSLAPPVLLAAA-GGIN-IENAAAYAAAGADILVTS 258 (272)
T ss_pred EEEEcCCHHHHHHHHH--cCCCEEEECCCCHH--HHHHHHHHHhccCCCceEEEE-CCCC-HHHHHHHHHcCCcEEEEC
Confidence 5677888887766653 46789888765555 345666654432 3334433 3332 244556688999999654
No 331
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=20.03 E-value=89 Score=29.75 Aligned_cols=62 Identities=19% Similarity=0.217 Sum_probs=48.0
Q ss_pred CCCCeEEEecC--CCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 025857 131 GQAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (247)
Q Consensus 131 ~~~~~vVv~~~--DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ 194 (247)
...||+-+.|- -=.|.-+.+++.+. +.+.+|||-..+.+--+-.-++|+. +|||++.-.|.+
T Consensus 188 ~~vD~IalSFVrsa~dV~~lr~~l~~~-~~~~~iiaKIE~~~~v~nl~eI~~~-sDgimiaRGDLg 251 (348)
T PF00224_consen 188 NGVDFIALSFVRSAEDVKELRKILGEK-GKDIKIIAKIETKEAVENLDEILEA-SDGIMIARGDLG 251 (348)
T ss_dssp TT-SEEEETTE-SHHHHHHHHHHHTCT-TTTSEEEEEE-SHHHHHTHHHHHHH-SSEEEEEHHHHH
T ss_pred cCCCEEEecCCCchHHHHHHHHHhhhc-CcccceeeccccHHHHhhHHHHhhh-cCeEEEecCCcc
Confidence 36899988873 34477888888874 4677999999999999999999987 899999976643
Done!