Query 025857
Match_columns 247
No_of_seqs 130 out of 164
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 19:09:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025857.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025857hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qz6_A HPCH/HPAI aldolase; str 94.6 0.069 2.3E-06 47.1 6.9 92 109-204 15-111 (261)
2 3qja_A IGPS, indole-3-glycerol 94.0 0.5 1.7E-05 42.0 11.1 118 59-196 124-254 (272)
3 3q58_A N-acetylmannosamine-6-p 92.4 1.4 4.6E-05 38.0 11.2 112 60-188 39-155 (229)
4 2v5j_A 2,4-dihydroxyhept-2-ENE 91.9 0.96 3.3E-05 40.4 9.9 93 107-203 36-133 (287)
5 2vws_A YFAU, 2-keto-3-deoxy su 91.5 0.91 3.1E-05 39.8 9.1 93 108-204 16-113 (267)
6 1dxe_A 2-dehydro-3-deoxy-galac 91.5 1.3 4.5E-05 38.4 10.0 89 110-204 20-114 (256)
7 3igs_A N-acetylmannosamine-6-p 90.9 2.7 9.3E-05 36.1 11.4 112 60-188 39-155 (232)
8 3q58_A N-acetylmannosamine-6-p 90.5 1.4 4.7E-05 38.0 9.1 107 60-190 91-211 (229)
9 2v82_A 2-dehydro-3-deoxy-6-pho 90.2 0.62 2.1E-05 38.4 6.5 115 60-201 22-143 (212)
10 1izc_A Macrophomate synthase i 89.5 0.82 2.8E-05 42.0 7.3 91 110-204 43-140 (339)
11 3paj_A Nicotinate-nucleotide p 88.6 0.66 2.3E-05 42.8 6.0 43 159-204 231-273 (320)
12 3bo9_A Putative nitroalkan dio 88.1 2.2 7.6E-05 38.2 9.0 110 57-190 37-152 (326)
13 3tsm_A IGPS, indole-3-glycerol 87.8 3.4 0.00012 36.9 9.9 122 59-203 131-266 (272)
14 3igs_A N-acetylmannosamine-6-p 87.4 2.6 9E-05 36.2 8.7 107 60-190 91-211 (232)
15 1e0t_A Pyruvate kinase, PK; ph 86.4 1.5 5.1E-05 42.3 7.2 135 58-205 173-334 (470)
16 1sgj_A Citrate lyase, beta sub 86.1 2.7 9.1E-05 36.9 8.2 93 109-205 8-117 (284)
17 1wbh_A KHG/KDPG aldolase; lyas 86.0 2.9 9.9E-05 35.6 8.2 105 60-191 31-138 (214)
18 3tqv_A Nicotinate-nucleotide p 85.9 1.2 4.3E-05 40.4 6.1 44 158-204 197-240 (287)
19 3qz6_A HPCH/HPAI aldolase; str 85.7 0.59 2E-05 41.1 3.8 141 51-194 17-179 (261)
20 1vhc_A Putative KHG/KDPG aldol 85.5 2.7 9.4E-05 36.1 7.8 105 60-191 32-139 (224)
21 1a3w_A Pyruvate kinase; allost 85.4 0.4 1.4E-05 46.6 2.8 135 58-205 194-354 (500)
22 3l0g_A Nicotinate-nucleotide p 85.3 1.3 4.6E-05 40.5 6.0 43 159-204 207-249 (300)
23 1o4u_A Type II quinolic acid p 84.4 1.9 6.5E-05 38.9 6.5 42 160-204 194-235 (285)
24 1ujp_A Tryptophan synthase alp 84.1 4.6 0.00016 35.6 8.8 106 60-191 109-231 (271)
25 1izc_A Macrophomate synthase i 84.0 0.75 2.5E-05 42.3 3.7 140 51-194 96-278 (339)
26 3luf_A Two-component system re 84.0 4.7 0.00016 34.0 8.5 142 53-198 77-237 (259)
27 1xi3_A Thiamine phosphate pyro 83.9 4 0.00014 33.0 7.8 118 61-204 77-211 (215)
28 3c2e_A Nicotinate-nucleotide p 83.7 0.7 2.4E-05 41.6 3.4 71 160-236 200-278 (294)
29 1dxe_A 2-dehydro-3-deoxy-galac 83.6 5.2 0.00018 34.6 8.8 139 52-194 22-181 (256)
30 2gjl_A Hypothetical protein PA 83.4 4 0.00014 36.1 8.1 51 132-190 96-146 (328)
31 1qap_A Quinolinic acid phospho 83.3 2.1 7.3E-05 38.6 6.4 41 161-204 210-250 (296)
32 3qtg_A Pyruvate kinase, PK; TI 83.1 1.5 5.2E-05 42.3 5.6 135 58-205 182-344 (461)
33 4avf_A Inosine-5'-monophosphat 82.6 6 0.00021 37.6 9.5 115 56-191 227-363 (490)
34 1wa3_A 2-keto-3-deoxy-6-phosph 82.6 2.9 0.0001 34.0 6.5 118 60-203 25-145 (205)
35 3usb_A Inosine-5'-monophosphat 82.6 1.8 6.1E-05 41.5 5.9 115 56-191 254-390 (511)
36 3vnd_A TSA, tryptophan synthas 82.4 1 3.6E-05 40.0 3.9 116 60-191 113-237 (267)
37 1qop_A Tryptophan synthase alp 82.2 1.2 4.1E-05 38.7 4.2 115 60-191 112-236 (268)
38 2b7n_A Probable nicotinate-nuc 82.2 3.4 0.00011 36.6 7.1 42 160-204 183-224 (273)
39 4fxs_A Inosine-5'-monophosphat 81.8 3.8 0.00013 39.0 7.9 115 56-191 229-365 (496)
40 2ekc_A AQ_1548, tryptophan syn 81.7 1.1 3.8E-05 39.0 3.8 113 60-190 112-235 (262)
41 1yxy_A Putative N-acetylmannos 81.7 9.2 0.00032 31.7 9.4 112 60-186 39-157 (234)
42 3gnn_A Nicotinate-nucleotide p 81.6 1.6 5.5E-05 39.8 4.9 42 159-203 209-250 (298)
43 3ffs_A Inosine-5-monophosphate 81.6 5.9 0.0002 37.2 8.9 110 60-191 146-277 (400)
44 2f6u_A GGGPS, (S)-3-O-geranylg 81.3 1.6 5.5E-05 38.3 4.7 77 118-203 146-229 (234)
45 4e38_A Keto-hydroxyglutarate-a 80.7 5.1 0.00018 35.0 7.7 117 59-202 48-168 (232)
46 2qvg_A Two component response 80.4 8.5 0.00029 27.8 7.8 66 132-199 59-128 (143)
47 3o63_A Probable thiamine-phosp 80.0 5.3 0.00018 34.8 7.5 103 60-190 46-163 (243)
48 1k68_A Phytochrome response re 79.9 7.8 0.00027 27.6 7.3 66 132-199 55-124 (140)
49 1yad_A Regulatory protein TENI 78.7 17 0.00057 29.9 9.9 98 63-190 35-138 (221)
50 1y0e_A Putative N-acetylmannos 78.5 16 0.00053 29.9 9.6 114 60-189 26-146 (223)
51 2jbm_A Nicotinate-nucleotide p 78.4 3.5 0.00012 37.1 6.1 42 160-204 198-239 (299)
52 3kcn_A Adenylate cyclase homol 77.9 13 0.00044 27.5 8.2 65 133-199 49-116 (151)
53 3nav_A Tryptophan synthase alp 77.8 2.2 7.4E-05 38.0 4.4 116 60-191 115-239 (271)
54 2y88_A Phosphoribosyl isomeras 77.5 15 0.00052 30.3 9.4 127 53-190 77-226 (244)
55 3o63_A Probable thiamine-phosp 77.3 18 0.00062 31.3 10.1 90 107-203 134-239 (243)
56 4fo4_A Inosine 5'-monophosphat 76.7 9.6 0.00033 35.2 8.6 112 58-191 108-242 (366)
57 3gr4_A Pyruvate kinase isozyme 76.7 2.5 8.5E-05 41.7 4.8 134 58-204 243-402 (550)
58 2e28_A Pyruvate kinase, PK; al 76.6 2.5 8.7E-05 41.7 4.9 135 58-205 174-335 (587)
59 3lab_A Putative KDPG (2-keto-3 76.6 7.9 0.00027 33.7 7.6 118 58-202 26-156 (217)
60 2yw3_A 4-hydroxy-2-oxoglutarat 76.1 14 0.00049 30.9 8.9 105 59-192 27-134 (207)
61 1mxs_A KDPG aldolase; 2-keto-3 76.0 7.8 0.00027 33.2 7.3 105 59-190 40-147 (225)
62 3jte_A Response regulator rece 75.9 14 0.00047 26.8 7.7 68 131-200 48-117 (143)
63 2gkg_A Response regulator homo 75.8 9.7 0.00033 26.5 6.7 66 132-199 49-118 (127)
64 3hqn_D Pyruvate kinase, PK; TI 75.7 1.8 6.2E-05 42.1 3.6 134 58-204 193-352 (499)
65 1k66_A Phytochrome response re 75.5 20 0.00068 25.7 8.8 67 132-200 62-132 (149)
66 3khj_A Inosine-5-monophosphate 75.4 7.9 0.00027 35.5 7.6 109 60-191 107-238 (361)
67 3hdv_A Response regulator; PSI 75.2 11 0.00039 27.0 7.1 66 133-200 53-121 (136)
68 1qpo_A Quinolinate acid phosph 73.6 4.3 0.00015 36.5 5.2 41 161-204 196-236 (284)
69 3grc_A Sensor protein, kinase; 73.3 7.4 0.00025 28.2 5.7 43 158-200 79-121 (140)
70 2z6i_A Trans-2-enoyl-ACP reduc 73.0 10 0.00035 33.7 7.6 107 60-190 78-192 (332)
71 3mz2_A Glycerophosphoryl diest 72.7 4.3 0.00015 35.9 5.0 51 149-201 218-276 (292)
72 4drs_A Pyruvate kinase; glycol 72.5 1.9 6.7E-05 42.2 2.9 139 61-205 220-384 (526)
73 2tps_A Protein (thiamin phosph 72.4 13 0.00045 30.3 7.6 113 62-204 86-221 (227)
74 3lua_A Response regulator rece 72.3 16 0.00053 26.5 7.3 43 158-201 80-122 (140)
75 2zay_A Response regulator rece 72.1 17 0.00057 26.5 7.4 67 132-200 52-122 (147)
76 4e7p_A Response regulator; DNA 72.1 23 0.0008 26.0 8.3 68 132-201 66-135 (150)
77 1zgz_A Torcad operon transcrip 71.8 12 0.00041 26.2 6.4 66 132-199 46-112 (122)
78 3nhm_A Response regulator; pro 71.5 13 0.00044 26.5 6.6 66 132-200 47-116 (133)
79 1xi3_A Thiamine phosphate pyro 71.0 20 0.0007 28.7 8.3 103 59-190 28-136 (215)
80 3fwz_A Inner membrane protein 70.9 17 0.00058 27.6 7.5 104 60-191 20-127 (140)
81 2xz9_A Phosphoenolpyruvate-pro 70.6 12 0.00042 33.9 7.6 97 106-205 15-159 (324)
82 3hdg_A Uncharacterized protein 70.5 14 0.00048 26.5 6.6 70 132-203 51-122 (137)
83 1thf_D HISF protein; thermophI 70.3 42 0.0014 27.8 10.4 123 53-190 77-225 (253)
84 4dad_A Putative pilus assembly 70.3 11 0.00036 27.6 6.0 69 131-201 66-136 (146)
85 3bw2_A 2-nitropropane dioxygen 70.3 12 0.0004 33.8 7.4 107 60-190 112-238 (369)
86 3tha_A Tryptophan synthase alp 70.1 4.3 0.00015 36.0 4.3 113 59-191 105-229 (252)
87 2tps_A Protein (thiamin phosph 69.6 14 0.00048 30.1 7.2 49 132-188 94-142 (227)
88 1x1o_A Nicotinate-nucleotide p 69.3 12 0.00041 33.6 7.1 53 147-203 185-237 (286)
89 2qsj_A DNA-binding response re 69.2 13 0.00045 27.4 6.3 84 116-201 34-119 (154)
90 3qja_A IGPS, indole-3-glycerol 68.8 9.3 0.00032 33.7 6.3 70 118-192 123-192 (272)
91 3eul_A Possible nitrate/nitrit 68.8 24 0.00082 25.9 7.7 67 132-200 61-129 (152)
92 1jcn_A Inosine monophosphate d 68.7 19 0.00066 33.8 8.8 112 58-190 255-388 (514)
93 3cnb_A DNA-binding response re 68.7 29 0.00099 24.7 8.2 68 132-201 54-125 (143)
94 1eep_A Inosine 5'-monophosphat 68.5 31 0.001 31.5 9.9 111 58-190 153-286 (404)
95 3mm4_A Histidine kinase homolo 68.4 14 0.00048 29.6 6.8 72 132-205 119-196 (206)
96 1vzw_A Phosphoribosyl isomeras 68.2 12 0.0004 31.2 6.5 107 91-202 5-120 (244)
97 3llv_A Exopolyphosphatase-rela 68.1 17 0.00058 27.1 6.9 113 50-191 6-125 (141)
98 3qvq_A Phosphodiesterase OLEI0 67.9 6.6 0.00023 33.4 5.0 36 48-85 208-244 (252)
99 3cg0_A Response regulator rece 67.9 14 0.00049 26.4 6.2 68 132-200 54-122 (140)
100 3khd_A Pyruvate kinase; malari 67.6 3.1 0.00011 40.7 3.2 133 59-204 218-377 (520)
101 3kht_A Response regulator; PSI 67.5 31 0.0011 24.9 8.1 66 132-199 51-121 (144)
102 3gg8_A Pyruvate kinase; malari 67.4 2.8 9.7E-05 40.9 2.8 135 58-205 208-369 (511)
103 1s8n_A Putative antiterminator 67.4 42 0.0014 26.1 10.6 29 171-199 96-124 (205)
104 2gjl_A Hypothetical protein PA 67.4 22 0.00074 31.3 8.4 107 60-190 86-202 (328)
105 2w6r_A Imidazole glycerol phos 67.3 8.9 0.0003 32.3 5.6 114 59-190 32-177 (266)
106 3ks6_A Glycerophosphoryl diest 67.1 4 0.00014 34.9 3.4 53 143-201 189-242 (250)
107 3eqz_A Response regulator; str 67.0 30 0.001 24.3 8.4 70 133-203 47-122 (135)
108 2v82_A 2-dehydro-3-deoxy-6-pho 67.0 17 0.00056 29.7 7.1 106 59-190 69-177 (212)
109 1qo2_A Molecule: N-((5-phospho 66.8 21 0.00072 29.7 7.8 130 53-190 76-224 (241)
110 2y88_A Phosphoribosyl isomeras 66.4 8.6 0.00029 31.9 5.3 105 92-202 5-119 (244)
111 3no3_A Glycerophosphodiester p 66.3 7.5 0.00026 32.9 5.0 37 48-86 194-231 (238)
112 1rd5_A Tryptophan synthase alp 66.2 4.3 0.00015 34.7 3.4 109 64-190 112-231 (262)
113 2z6i_A Trans-2-enoyl-ACP reduc 66.0 20 0.00067 31.9 7.8 52 131-190 87-138 (332)
114 1vrd_A Inosine-5'-monophosphat 65.9 24 0.00082 32.9 8.8 111 58-190 237-370 (494)
115 1w8s_A FBP aldolase, fructose- 65.8 57 0.0019 28.2 10.6 82 119-204 157-252 (263)
116 3ks6_A Glycerophosphoryl diest 65.6 7.8 0.00027 33.0 5.0 37 48-86 202-239 (250)
117 2qzj_A Two-component response 65.2 5.9 0.0002 29.0 3.6 67 132-200 48-115 (136)
118 3t05_A Pyruvate kinase, PK; te 65.0 4.8 0.00016 40.1 4.0 135 58-205 194-354 (606)
119 3ffs_A Inosine-5-monophosphate 64.7 13 0.00043 35.0 6.6 74 111-189 137-212 (400)
120 1xx1_A Smase I, sphingomyelina 64.7 13 0.00044 31.9 6.2 47 149-200 212-261 (285)
121 1i3c_A Response regulator RCP1 64.7 39 0.0013 24.8 8.7 68 132-201 61-132 (149)
122 1qkk_A DCTD, C4-dicarboxylate 64.2 37 0.0013 25.0 8.0 66 132-199 47-114 (155)
123 1ka9_F Imidazole glycerol phos 63.8 32 0.0011 28.4 8.4 110 59-188 86-224 (252)
124 3cwo_X Beta/alpha-barrel prote 62.6 42 0.0014 26.4 8.5 20 59-78 64-83 (237)
125 3eod_A Protein HNR; response r 62.2 12 0.00041 26.6 4.8 68 132-201 51-121 (130)
126 3f4w_A Putative hexulose 6 pho 62.2 28 0.00095 28.1 7.5 71 132-203 77-157 (211)
127 1zh2_A KDP operon transcriptio 62.1 7.2 0.00025 27.2 3.5 40 159-199 72-111 (121)
128 1vzw_A Phosphoribosyl isomeras 62.1 19 0.00065 29.9 6.6 27 52-78 77-105 (244)
129 3ceu_A Thiamine phosphate pyro 61.9 8.1 0.00028 32.0 4.3 28 159-190 88-115 (210)
130 3h5i_A Response regulator/sens 61.8 3.4 0.00012 30.3 1.7 68 132-200 50-118 (140)
131 3qvq_A Phosphodiesterase OLEI0 61.6 6.1 0.00021 33.7 3.5 50 143-198 195-245 (252)
132 3f6p_A Transcriptional regulat 61.1 7.3 0.00025 27.8 3.4 38 160-198 74-111 (120)
133 1p6q_A CHEY2; chemotaxis, sign 61.1 32 0.0011 24.2 6.9 67 132-200 51-121 (129)
134 2qr3_A Two-component system re 60.9 27 0.00092 24.9 6.5 42 159-201 80-121 (140)
135 3snk_A Response regulator CHEY 60.8 22 0.00076 25.5 6.1 40 159-199 87-126 (135)
136 1xx1_A Smase I, sphingomyelina 60.6 9.9 0.00034 32.6 4.7 29 49-77 223-252 (285)
137 3h1g_A Chemotaxis protein CHEY 60.4 34 0.0012 24.4 7.0 40 159-199 81-120 (129)
138 1geq_A Tryptophan synthase alp 60.2 8.5 0.00029 32.1 4.1 19 60-78 98-116 (248)
139 3no3_A Glycerophosphodiester p 59.9 6.1 0.00021 33.5 3.2 46 149-199 186-232 (238)
140 3t8y_A CHEB, chemotaxis respon 59.9 39 0.0013 25.5 7.6 33 160-192 99-132 (164)
141 1zfj_A Inosine monophosphate d 59.9 18 0.0006 33.7 6.6 113 58-191 233-367 (491)
142 3lte_A Response regulator; str 59.4 25 0.00085 24.9 6.1 65 132-199 50-118 (132)
143 3heb_A Response regulator rece 59.3 27 0.00094 25.6 6.5 42 159-201 89-130 (152)
144 3l12_A Putative glycerophospho 59.1 11 0.00038 33.1 4.8 51 143-199 253-304 (313)
145 1tqj_A Ribulose-phosphate 3-ep 58.9 6.1 0.00021 33.6 3.1 122 60-201 75-219 (230)
146 2w6r_A Imidazole glycerol phos 58.6 70 0.0024 26.7 9.6 70 132-204 169-247 (266)
147 3bo9_A Putative nitroalkan dio 58.1 54 0.0019 29.1 9.3 108 59-190 91-206 (326)
148 3cz5_A Two-component response 58.0 29 0.001 25.5 6.4 68 132-201 51-120 (153)
149 2pln_A HP1043, response regula 57.8 49 0.0017 23.6 11.3 41 159-200 86-127 (137)
150 1p2f_A Response regulator; DRR 57.7 31 0.0011 27.1 6.9 69 131-201 42-112 (220)
151 1vd6_A Glycerophosphoryl diest 57.6 14 0.00049 30.7 5.1 37 48-86 184-221 (224)
152 1h1y_A D-ribulose-5-phosphate 57.6 22 0.00075 29.7 6.3 112 58-190 20-146 (228)
153 1y0e_A Putative N-acetylmannos 57.4 63 0.0021 26.2 8.9 110 59-191 77-206 (223)
154 3cfy_A Putative LUXO repressor 57.2 45 0.0015 24.1 7.3 67 132-200 48-116 (137)
155 3ovp_A Ribulose-phosphate 3-ep 57.0 33 0.0011 29.2 7.4 127 60-204 77-218 (228)
156 2rjn_A Response regulator rece 56.9 55 0.0019 23.9 8.4 66 132-199 51-119 (154)
157 1vd6_A Glycerophosphoryl diest 56.9 34 0.0012 28.4 7.3 59 144-203 77-142 (224)
158 3l12_A Putative glycerophospho 56.7 11 0.00038 33.0 4.5 36 48-85 266-302 (313)
159 3hv2_A Response regulator/HD d 56.1 57 0.0019 23.9 11.0 40 159-199 86-126 (153)
160 3hzh_A Chemotaxis response reg 55.9 24 0.00083 26.3 5.7 41 158-199 110-150 (157)
161 1dbw_A Transcriptional regulat 55.8 50 0.0017 23.2 8.0 67 132-200 47-115 (126)
162 3f6c_A Positive transcription 55.7 20 0.0007 25.4 5.1 68 132-201 46-115 (134)
163 1h1y_A D-ribulose-5-phosphate 55.4 16 0.00054 30.6 5.0 20 59-78 76-95 (228)
164 1sgj_A Citrate lyase, beta sub 55.1 1E+02 0.0035 26.6 11.2 134 50-194 7-157 (284)
165 3gt7_A Sensor protein; structu 55.0 38 0.0013 25.1 6.7 71 132-204 51-126 (154)
166 1xhf_A DYE resistance, aerobic 55.0 14 0.00049 25.8 4.1 66 132-199 47-113 (123)
167 2qxy_A Response regulator; reg 54.5 19 0.00066 25.9 4.8 67 132-201 48-116 (142)
168 1tmy_A CHEY protein, TMY; chem 54.4 15 0.00052 25.6 4.1 66 132-199 47-114 (120)
169 3i42_A Response regulator rece 54.3 12 0.00039 26.6 3.5 43 158-202 76-118 (127)
170 1kgs_A DRRD, DNA binding respo 54.1 28 0.00097 27.3 6.1 68 132-201 46-115 (225)
171 1jbe_A Chemotaxis protein CHEY 53.9 54 0.0018 22.9 9.2 66 132-199 49-118 (128)
172 1dcf_A ETR1 protein; beta-alph 53.8 17 0.00057 26.2 4.3 39 161-200 85-123 (136)
173 2fli_A Ribulose-phosphate 3-ep 53.7 31 0.0011 27.9 6.4 25 53-77 66-91 (220)
174 3q9s_A DNA-binding response re 53.3 19 0.00065 29.7 5.1 68 132-201 81-149 (249)
175 1a04_A Nitrate/nitrite respons 53.3 62 0.0021 25.3 8.0 68 132-201 51-120 (215)
176 3khj_A Inosine-5-monophosphate 53.1 32 0.0011 31.5 7.0 54 132-188 117-172 (361)
177 1zcc_A Glycerophosphodiester p 52.8 14 0.00049 31.3 4.4 37 48-86 192-230 (248)
178 3rlg_A Sphingomyelin phosphodi 52.6 15 0.00052 33.6 4.7 35 50-86 241-276 (302)
179 2pl1_A Transcriptional regulat 52.2 55 0.0019 22.5 7.0 67 132-200 44-112 (121)
180 2jba_A Phosphate regulon trans 51.7 13 0.00045 26.1 3.4 40 159-199 76-115 (127)
181 2vws_A YFAU, 2-keto-3-deoxy su 51.6 99 0.0034 26.7 9.7 48 157-204 90-166 (267)
182 3ilh_A Two component response 50.9 64 0.0022 22.9 8.0 69 131-201 59-134 (146)
183 2qv0_A Protein MRKE; structura 50.9 65 0.0022 23.0 8.8 65 132-200 55-121 (143)
184 4avf_A Inosine-5'-monophosphat 50.6 42 0.0014 31.8 7.6 65 121-188 229-297 (490)
185 3cu2_A Ribulose-5-phosphate 3- 50.6 33 0.0011 29.6 6.4 114 58-191 80-219 (237)
186 2r25_B Osmosensing histidine p 50.5 15 0.00053 26.6 3.7 41 160-201 82-122 (133)
187 3b2n_A Uncharacterized protein 50.1 67 0.0023 22.9 7.9 68 132-201 49-118 (133)
188 3kto_A Response regulator rece 49.9 14 0.00049 26.7 3.5 42 159-201 80-121 (136)
189 3crn_A Response regulator rece 49.6 16 0.00054 26.3 3.6 40 159-199 75-114 (132)
190 2nv1_A Pyridoxal biosynthesis 49.5 1.3E+02 0.0045 26.1 11.7 109 53-188 24-151 (305)
191 1u5h_A CITE; TIM barrel, struc 49.4 32 0.0011 30.0 6.2 85 110-199 8-102 (273)
192 2v5j_A 2,4-dihydroxyhept-2-ENE 49.2 98 0.0034 27.3 9.4 47 158-204 112-187 (287)
193 2pz0_A Glycerophosphoryl diest 48.9 12 0.00042 31.7 3.3 36 48-85 209-245 (252)
194 2oqr_A Sensory transduction pr 48.9 56 0.0019 25.7 7.1 68 132-201 48-116 (230)
195 2qjg_A Putative aldolase MJ040 48.8 79 0.0027 26.6 8.4 36 167-202 163-200 (273)
196 3bw2_A 2-nitropropane dioxygen 48.3 26 0.00089 31.5 5.6 51 132-189 122-172 (369)
197 3inp_A D-ribulose-phosphate 3- 46.8 27 0.00093 30.5 5.3 126 60-203 99-243 (246)
198 3n53_A Response regulator rece 46.8 33 0.0011 24.7 5.0 42 158-200 75-116 (140)
199 3r2g_A Inosine 5'-monophosphat 46.7 25 0.00085 32.5 5.3 110 58-189 54-169 (361)
200 1vc4_A Indole-3-glycerol phosp 46.6 51 0.0017 28.5 7.0 108 59-191 67-183 (254)
201 3glc_A Aldolase LSRF; TIM barr 46.6 1.2E+02 0.0042 27.1 9.7 81 118-204 186-278 (295)
202 3tsm_A IGPS, indole-3-glycerol 46.6 1.1E+02 0.0039 27.0 9.4 119 60-202 82-216 (272)
203 1srr_A SPO0F, sporulation resp 46.4 17 0.00058 25.6 3.3 67 132-200 47-115 (124)
204 3r0j_A Possible two component 46.4 74 0.0025 25.7 7.7 68 132-201 67-136 (250)
205 3gl9_A Response regulator; bet 46.1 20 0.00069 25.5 3.7 39 159-198 76-114 (122)
206 2a9o_A Response regulator; ess 45.8 19 0.00065 24.9 3.4 40 159-199 72-111 (120)
207 3usb_A Inosine-5'-monophosphat 45.1 30 0.001 33.0 5.7 55 131-188 267-324 (511)
208 1mb3_A Cell division response 44.9 23 0.00077 24.7 3.8 67 132-200 45-115 (124)
209 3eoo_A Methylisocitrate lyase; 44.6 1.2E+02 0.0041 27.3 9.4 73 132-204 111-207 (298)
210 2otd_A Glycerophosphodiester p 44.6 23 0.00078 29.7 4.3 30 48-77 205-235 (247)
211 2oog_A Glycerophosphoryl diest 44.2 16 0.00054 31.6 3.3 36 48-85 239-275 (287)
212 3r2g_A Inosine 5'-monophosphat 44.1 1.2E+02 0.0042 27.8 9.5 110 59-191 101-230 (361)
213 3t6k_A Response regulator rece 43.8 23 0.00079 25.7 3.8 39 160-199 79-117 (136)
214 3a10_A Response regulator; pho 43.7 50 0.0017 22.7 5.4 63 132-198 45-109 (116)
215 2pz0_A Glycerophosphoryl diest 43.5 15 0.00052 31.1 3.1 50 143-198 196-246 (252)
216 1geq_A Tryptophan synthase alp 42.9 77 0.0026 26.2 7.3 31 174-204 100-130 (248)
217 3qll_A Citrate lyase; beta bar 42.6 1.7E+02 0.0057 26.2 10.0 91 112-205 48-153 (316)
218 3ch0_A Glycerophosphodiester p 42.6 16 0.00056 31.0 3.1 30 48-77 234-264 (272)
219 2gwr_A DNA-binding response re 42.1 36 0.0012 27.4 5.0 69 132-202 49-118 (238)
220 2j48_A Two-component sensor ki 41.4 30 0.001 23.4 3.8 62 132-198 45-110 (119)
221 2zbt_A Pyridoxal biosynthesis 41.0 1.7E+02 0.0058 25.0 13.7 112 53-189 24-152 (297)
222 3rqi_A Response regulator prot 41.0 34 0.0011 26.5 4.5 41 158-199 78-118 (184)
223 3l9w_A Glutathione-regulated p 40.6 53 0.0018 30.3 6.5 101 60-188 17-121 (413)
224 1rpx_A Protein (ribulose-phosp 40.3 1.3E+02 0.0044 24.6 8.3 110 58-190 24-148 (230)
225 4fxs_A Inosine-5'-monophosphat 40.0 51 0.0017 31.3 6.4 55 132-189 243-300 (496)
226 1zcc_A Glycerophosphodiester p 39.7 13 0.00044 31.5 2.1 56 142-201 177-233 (248)
227 2oog_A Glycerophosphoryl diest 39.4 23 0.00078 30.5 3.6 44 149-197 231-275 (287)
228 3e61_A Putative transcriptiona 38.8 57 0.002 26.3 5.8 33 168-200 49-83 (277)
229 2h6r_A Triosephosphate isomera 37.8 73 0.0025 26.7 6.4 113 63-196 75-211 (219)
230 3cg4_A Response regulator rece 37.7 28 0.00095 25.0 3.3 66 132-199 51-120 (142)
231 1vhc_A Putative KHG/KDPG aldol 37.5 14 0.00047 31.6 1.9 33 166-201 76-108 (224)
232 1dz3_A Stage 0 sporulation pro 37.1 16 0.00054 26.1 1.9 66 132-199 48-116 (130)
233 4dbe_A Orotidine 5'-phosphate 37.0 32 0.0011 29.4 4.1 32 172-203 125-156 (222)
234 3qll_A Citrate lyase; beta bar 36.8 80 0.0027 28.3 6.9 130 50-194 44-194 (316)
235 1to3_A Putative aldolase YIHT; 36.4 96 0.0033 27.6 7.3 14 62-75 113-126 (304)
236 3l4b_C TRKA K+ channel protien 35.9 45 0.0016 26.9 4.7 105 60-191 13-121 (218)
237 1w8s_A FBP aldolase, fructose- 35.9 1.2E+02 0.0043 26.0 7.8 33 58-91 42-74 (263)
238 2o55_A Putative glycerophospho 35.4 49 0.0017 27.9 5.0 30 48-77 210-244 (258)
239 3cwo_X Beta/alpha-barrel prote 34.7 1.2E+02 0.0042 23.6 7.0 33 172-204 65-100 (237)
240 2o55_A Putative glycerophospho 33.7 53 0.0018 27.6 5.0 50 143-198 197-251 (258)
241 3m6m_D Sensory/regulatory prot 33.6 39 0.0013 24.8 3.6 40 161-201 92-131 (143)
242 1mvo_A PHOP response regulator 33.6 38 0.0013 24.0 3.5 68 132-201 47-116 (136)
243 2hqr_A Putative transcriptiona 32.4 30 0.001 27.3 3.0 42 159-201 68-110 (223)
244 2aam_A Hypothetical protein TM 31.9 97 0.0033 27.9 6.6 77 105-193 66-146 (309)
245 1a3w_A Pyruvate kinase; allost 31.8 48 0.0016 32.1 4.8 38 168-205 192-230 (500)
246 3gk0_A PNP synthase, pyridoxin 31.8 67 0.0023 29.2 5.4 38 167-204 51-94 (278)
247 1wbh_A KHG/KDPG aldolase; lyas 31.7 18 0.00062 30.6 1.7 30 166-198 75-104 (214)
248 3nl6_A Thiamine biosynthetic b 31.7 89 0.003 30.2 6.7 99 60-188 28-137 (540)
249 1qo0_D AMIR; binding protein, 31.6 73 0.0025 24.5 5.1 65 132-199 52-118 (196)
250 3lye_A Oxaloacetate acetyl hyd 31.5 2E+02 0.0068 26.0 8.6 73 132-204 116-214 (307)
251 1viz_A PCRB protein homolog; s 31.0 45 0.0015 29.1 4.1 76 119-200 140-225 (240)
252 3tdn_A FLR symmetric alpha-bet 30.5 29 0.00099 29.0 2.7 35 166-203 88-125 (247)
253 1ydn_A Hydroxymethylglutaryl-C 30.4 2.6E+02 0.0089 24.0 10.4 128 58-205 27-195 (295)
254 3ctl_A D-allulose-6-phosphate 30.2 59 0.002 27.8 4.7 126 60-204 70-218 (231)
255 3rlg_A Sphingomyelin phosphodi 29.9 46 0.0016 30.5 4.1 55 141-200 217-278 (302)
256 3klo_A Transcriptional regulat 29.9 92 0.0031 24.7 5.6 43 158-201 82-124 (225)
257 1ypf_A GMP reductase; GUAC, pu 29.8 65 0.0022 28.7 5.1 67 119-188 104-176 (336)
258 3ve9_A Orotidine-5'-phosphate 29.8 43 0.0015 28.5 3.7 31 173-203 119-149 (215)
259 3cu5_A Two component transcrip 29.7 76 0.0026 23.0 4.7 66 132-199 49-116 (141)
260 3t05_A Pyruvate kinase, PK; te 29.6 22 0.00077 35.3 2.1 62 131-194 205-268 (606)
261 2e28_A Pyruvate kinase, PK; al 29.5 53 0.0018 32.4 4.7 38 168-205 172-210 (587)
262 2yw3_A 4-hydroxy-2-oxoglutarat 29.5 35 0.0012 28.5 3.0 64 132-201 38-102 (207)
263 4adt_A Pyridoxine biosynthetic 29.2 3.1E+02 0.011 24.4 9.6 108 58-190 29-153 (297)
264 2i1o_A Nicotinate phosphoribos 29.1 74 0.0025 29.6 5.5 44 160-203 211-263 (398)
265 2g1u_A Hypothetical protein TM 29.1 1.7E+02 0.0057 22.2 6.7 56 131-192 83-139 (155)
266 1ys7_A Transcriptional regulat 28.9 42 0.0014 26.5 3.3 68 132-201 51-120 (233)
267 1yio_A Response regulatory pro 28.5 60 0.0021 25.1 4.1 66 132-199 48-115 (208)
268 2hjp_A Phosphonopyruvate hydro 28.3 1.1E+02 0.0039 27.2 6.4 73 132-204 103-203 (290)
269 2xz9_A Phosphoenolpyruvate-pro 28.0 62 0.0021 29.2 4.6 127 62-197 127-285 (324)
270 1m5w_A Pyridoxal phosphate bio 27.6 88 0.003 27.9 5.4 36 169-204 25-66 (243)
271 3to5_A CHEY homolog; alpha(5)b 27.5 1.4E+02 0.0047 23.0 6.0 25 174-198 101-125 (134)
272 8abp_A L-arabinose-binding pro 27.5 60 0.002 26.6 4.1 32 167-198 41-73 (306)
273 4a29_A Engineered retro-aldol 26.9 2.1E+02 0.0072 25.5 7.8 72 113-190 156-234 (258)
274 2aef_A Calcium-gated potassium 26.8 77 0.0026 25.7 4.7 66 115-189 56-125 (234)
275 2i14_A Nicotinate-nucleotide p 26.1 84 0.0029 29.2 5.3 37 160-196 208-253 (395)
276 3kyj_B CHEY6 protein, putative 26.1 70 0.0024 23.1 3.9 37 160-196 88-125 (145)
277 1id1_A Putative potassium chan 26.0 2.1E+02 0.0072 21.4 7.7 63 116-187 57-123 (153)
278 3gg8_A Pyruvate kinase; malari 25.9 36 0.0012 33.2 2.8 60 132-193 221-282 (511)
279 1thf_D HISF protein; thermophI 25.8 40 0.0014 27.9 2.8 41 159-202 74-119 (253)
280 3c85_A Putative glutathione-re 25.6 2.3E+02 0.0078 21.8 8.6 108 60-191 52-161 (183)
281 4djd_C C/Fe-SP, corrinoid/iron 25.4 1.6E+02 0.0055 28.2 7.1 77 113-192 158-235 (446)
282 3qtg_A Pyruvate kinase, PK; TI 25.3 44 0.0015 32.2 3.2 61 131-193 195-257 (461)
283 3m47_A Orotidine 5'-phosphate 25.2 67 0.0023 27.2 4.1 32 173-204 141-172 (228)
284 3l49_A ABC sugar (ribose) tran 25.0 85 0.0029 25.4 4.6 29 171-199 50-78 (291)
285 3gr4_A Pyruvate kinase isozyme 25.0 39 0.0013 33.3 2.9 61 132-194 255-317 (550)
286 1fvi_A Chlorella virus DNA lig 25.0 87 0.003 27.6 4.9 27 166-192 141-168 (297)
287 4e38_A Keto-hydroxyglutarate-a 24.7 85 0.0029 27.2 4.7 33 166-201 93-125 (232)
288 3hqn_D Pyruvate kinase, PK; TI 24.2 37 0.0012 33.0 2.5 61 132-194 205-267 (499)
289 3tb6_A Arabinose metabolism tr 24.2 1.6E+02 0.0053 23.7 6.0 25 168-192 56-81 (298)
290 1o1z_A GDPD, glycerophosphodie 24.1 96 0.0033 25.9 4.8 36 49-87 197-233 (234)
291 2czd_A Orotidine 5'-phosphate 24.1 58 0.002 26.6 3.4 31 173-203 123-153 (208)
292 3w01_A Heptaprenylglyceryl pho 24.0 42 0.0014 29.5 2.6 60 132-197 159-225 (235)
293 3dxi_A Putative aldolase; TIM 23.9 16 0.00055 33.1 -0.1 14 230-243 158-172 (320)
294 3i10_A Putative glycerophospho 23.9 56 0.0019 28.7 3.5 54 147-207 206-275 (278)
295 1a2o_A CHEB methylesterase; ba 23.7 3.6E+02 0.012 23.9 8.8 61 132-193 49-111 (349)
296 1e0t_A Pyruvate kinase, PK; ph 23.5 42 0.0014 32.3 2.7 73 119-194 174-248 (470)
297 3ih1_A Methylisocitrate lyase; 23.3 1.9E+02 0.0065 26.0 6.9 72 132-203 117-210 (305)
298 1s2w_A Phosphoenolpyruvate pho 23.2 1.9E+02 0.0063 25.8 6.8 73 132-204 107-207 (295)
299 3mz2_A Glycerophosphoryl diest 23.1 92 0.0031 27.3 4.7 30 48-77 226-266 (292)
300 3kke_A LACI family transcripti 23.0 1E+02 0.0035 25.5 4.8 24 171-194 60-83 (303)
301 2f7f_A Nicotinate phosphoribos 22.7 94 0.0032 29.9 5.0 43 162-204 228-280 (494)
302 4fo4_A Inosine 5'-monophosphat 22.6 94 0.0032 28.5 4.8 53 132-188 120-176 (366)
303 1eep_A Inosine 5'-monophosphat 22.4 90 0.0031 28.3 4.6 53 131-188 164-221 (404)
304 3d02_A Putative LACI-type tran 21.9 1.2E+02 0.0042 24.6 5.0 30 168-197 46-76 (303)
305 1ydy_A Glycerophosphoryl diest 21.7 36 0.0012 30.3 1.8 48 149-198 297-353 (356)
306 1ypf_A GMP reductase; GUAC, pu 21.7 3E+02 0.01 24.3 7.9 70 116-191 156-241 (336)
307 1mxs_A KDPG aldolase; 2-keto-3 21.7 29 0.001 29.6 1.1 29 165-196 84-112 (225)
308 2c6q_A GMP reductase 2; TIM ba 21.6 98 0.0034 28.0 4.7 55 132-189 132-189 (351)
309 3iwp_A Copper homeostasis prot 21.0 1.5E+02 0.0052 26.7 5.8 118 58-191 47-188 (287)
310 1jcn_A Inosine monophosphate d 20.8 1.1E+02 0.0037 28.7 4.9 54 131-188 266-323 (514)
311 3o74_A Fructose transport syst 20.7 1.4E+02 0.0048 23.7 5.0 25 168-192 43-68 (272)
312 3uug_A Multiple sugar-binding 20.6 71 0.0024 26.5 3.3 26 171-196 48-73 (330)
313 3m9w_A D-xylose-binding peripl 20.5 93 0.0032 25.7 4.0 28 168-195 43-71 (313)
314 2cu0_A Inosine-5'-monophosphat 20.5 2.2E+02 0.0075 26.5 7.0 30 159-191 328-359 (486)
315 3l6u_A ABC-type sugar transpor 20.1 72 0.0025 25.9 3.2 26 171-196 53-78 (293)
316 3k9c_A Transcriptional regulat 20.1 79 0.0027 26.0 3.4 25 171-195 55-79 (289)
No 1
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=94.65 E-value=0.069 Score=47.11 Aligned_cols=92 Identities=13% Similarity=0.212 Sum_probs=69.0
Q ss_pred CeEEEEEEe-cChhhHhhhccccCCCCeEEEecCCCeeechhhhhhccc---CCCceEEEEcCCHHHHHHHHHHhhcccC
Q 025857 109 RRVGSIIEV-STPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ---GSGKTVFAISKTPSEAQIFLEALEQGLG 184 (247)
Q Consensus 109 ~~va~~~~I-~~~e~le~a~~~~~~~~~vVv~~~DWtiIPlENlIA~~q---~~~~~lia~v~~~~EA~val~~LE~G~D 184 (247)
..+|.++.. .+++-.+.+... ..|+++++..| .+.|.+.+.+.++ ..+..++..++..+. .-...+|+.|+|
T Consensus 15 ~~~g~~~~~~~~p~~~e~a~~~--g~D~vilDlEh-av~~~~k~~~~l~a~~~~~~~~~VRVn~~~~-~di~~~ld~G~~ 90 (261)
T 3qz6_A 15 SVVGTMLNLVYNPDIVRIYAEA--GLDYFIVDCEH-AAYTFREINHLVSVAKNAGVSVLVRIPQVDR-AHVQRLLDIGAE 90 (261)
T ss_dssp CEEEEEESSCCCTTHHHHHHHT--TCSEEEEESSS-SCCCHHHHHHHHHHHHHHTCEEEEECSSCCH-HHHHHHHHHTCC
T ss_pred CEEEEEEecCCCHHHHHHHhcC--CcCEEEEeccC-CCCCHHHHHHHHHHHhhcCCeEEEEeCCCCH-HHHHHHHhcCCC
Confidence 567888888 888887777643 58999999887 5677666555443 245678888876544 345677889999
Q ss_pred eEEEe-cCCHHHHHHHHHhhc
Q 025857 185 GIVLK-VEDVKAVLALKEYFD 204 (247)
Q Consensus 185 GVll~-~~d~~ev~~l~~~~~ 204 (247)
||+++ .+++++++++.+.+.
T Consensus 91 gI~lP~v~saed~~~~~~~~~ 111 (261)
T 3qz6_A 91 GFMIPGVQSAETMRETVRLAK 111 (261)
T ss_dssp EEEETTCCSHHHHHHHHHHHS
T ss_pred EEEECCcCCHHHHHHHHHHhc
Confidence 99997 678999999888763
No 2
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=93.97 E-value=0.5 Score=41.98 Aligned_cols=118 Identities=16% Similarity=0.177 Sum_probs=70.8
Q ss_pred chhHHHHHHHhCCcEEEecCc--chHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeE
Q 025857 59 SKQVMTAAVERGWNTFVFLSE--NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~~~--~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~v 136 (247)
+...+..|++.|+|+|+.... ..+..+++-.... .-|.. .++++.+.++++.+... .++++
T Consensus 124 d~~qv~~A~~~GAD~VlLi~a~l~~~~l~~l~~~a~-------------~lGl~--~lvev~t~ee~~~A~~~--Gad~I 186 (272)
T 3qja_A 124 QPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTE-------------SLGMT--ALVEVHTEQEADRALKA--GAKVI 186 (272)
T ss_dssp SHHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHH-------------HTTCE--EEEEESSHHHHHHHHHH--TCSEE
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHHHHHHH-------------HCCCc--EEEEcCCHHHHHHHHHC--CCCEE
Confidence 455689999999999987311 0111222111100 11222 46788999998887654 58999
Q ss_pred EEecCCCee--echhhhhhcccCC--CceEEEEc--CCHHHHHHHHHHhhcccCeEEEec-----CCHHHH
Q 025857 137 VIDLPDWQV--IPAENIVASFQGS--GKTVFAIS--KTPSEAQIFLEALEQGLGGIVLKV-----EDVKAV 196 (247)
Q Consensus 137 Vv~~~DWti--IPlENlIA~~q~~--~~~lia~v--~~~~EA~val~~LE~G~DGVll~~-----~d~~ev 196 (247)
-+..+|-+- ..++.+..-.+.. +..++++- ++.++++.+ ++.|+|||++-. +||.+.
T Consensus 187 Gv~~r~l~~~~~dl~~~~~l~~~v~~~~pvVaegGI~t~edv~~l---~~~GadgvlVGsal~~a~dp~~~ 254 (272)
T 3qja_A 187 GVNARDLMTLDVDRDCFARIAPGLPSSVIRIAESGVRGTADLLAY---AGAGADAVLVGEGLVTSGDPRAA 254 (272)
T ss_dssp EEESBCTTTCCBCTTHHHHHGGGSCTTSEEEEESCCCSHHHHHHH---HHTTCSEEEECHHHHTCSCHHHH
T ss_pred EECCCcccccccCHHHHHHHHHhCcccCEEEEECCCCCHHHHHHH---HHcCCCEEEEcHHHhCCCCHHHH
Confidence 998765322 3445443222222 45667764 678887754 678999999854 677643
No 3
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=92.44 E-value=1.4 Score=38.03 Aligned_cols=112 Identities=14% Similarity=0.130 Sum_probs=73.3
Q ss_pred hhHHHHHHHhCCcEEEecC-cchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEec-ChhhHhhhccccCCCCeEE
Q 025857 60 KQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENIV 137 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~-~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~-~~e~le~a~~~~~~~~~vV 137 (247)
.++..++.+.|+.++-+.+ ++...+++.-++.++.-...+.+ |.. +.|. +.++++.+. ...+|.++
T Consensus 39 ~~~A~a~~~~Ga~~i~~~~~~~i~~ir~~v~~Pvig~~k~~~~------~~~----~~I~~~~~~i~~~~--~aGad~I~ 106 (229)
T 3q58_A 39 AAMAQAAASAGAVAVRIEGIENLRTVRPHLSVPIIGIIKRDLT------GSP----VRITPYLQDVDALA--QAGADIIA 106 (229)
T ss_dssp HHHHHHHHHTTCSEEEEESHHHHHHHGGGCCSCEEEECBCCCS------SCC----CCBSCSHHHHHHHH--HHTCSEEE
T ss_pred HHHHHHHHHCCCcEEEECCHHHHHHHHHhcCCCEEEEEeecCC------CCc----eEeCccHHHHHHHH--HcCCCEEE
Confidence 6788888899999988864 45666666666665532111111 100 0111 224444443 23678888
Q ss_pred EecC---CCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 025857 138 IDLP---DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (247)
Q Consensus 138 v~~~---DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll 188 (247)
+... ++ -.++.++..++..+..+++.+.+.+||+.+ ++.|+|.|..
T Consensus 107 l~~~~~~~p--~~l~~~i~~~~~~g~~v~~~v~t~eea~~a---~~~Gad~Ig~ 155 (229)
T 3q58_A 107 FDASFRSRP--VDIDSLLTRIRLHGLLAMADCSTVNEGISC---HQKGIEFIGT 155 (229)
T ss_dssp EECCSSCCS--SCHHHHHHHHHHTTCEEEEECSSHHHHHHH---HHTTCSEEEC
T ss_pred ECccccCCh--HHHHHHHHHHHHCCCEEEEecCCHHHHHHH---HhCCCCEEEe
Confidence 8764 34 367888998877778899999999999865 5789999963
No 4
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=91.94 E-value=0.96 Score=40.38 Aligned_cols=93 Identities=11% Similarity=0.097 Sum_probs=65.6
Q ss_pred CCC-eEEEEEEecChhhHhhhccccCCCCeEEEecCCCeeechhhh---hhcccCCCceEEEEcCCHHHHHHHHHHhhcc
Q 025857 107 GDR-RVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENI---VASFQGSGKTVFAISKTPSEAQIFLEALEQG 182 (247)
Q Consensus 107 ~g~-~va~~~~I~~~e~le~a~~~~~~~~~vVv~~~DWtiIPlENl---IA~~q~~~~~lia~v~~~~EA~val~~LE~G 182 (247)
+|+ .++.++.+.+++..+.+... ..|+++++..|-- .=.|++ +.+++..+..++..++..+.. ....+|+.|
T Consensus 36 ~G~~~~gl~~~~~~p~~~e~a~~~--GaD~v~lDlEh~~-~~~~~~~~~l~a~~~~~~~~~VRv~~~d~~-di~~~ld~g 111 (287)
T 2v5j_A 36 AGRPQIGLWLGLSSSYSAELLAGA--GFDWLLIDGEHAP-NNVQTVLTQLQAIAPYPSQPVVRPSWNDPV-QIKQLLDVG 111 (287)
T ss_dssp TTCCEEEEEECSCCHHHHHHHHTS--CCSEEEEESSSSS-CCHHHHHHHHHHHTTSSSEEEEECSSSCHH-HHHHHHHTT
T ss_pred CCCcEEEEEEECCCHHHHHHHHhC--CCCEEEEeCCCcc-chHHHHHHHHHHHHhcCCCEEEEECCCCHH-HHHHHHhCC
Confidence 355 68899999999998887643 5899999988762 223444 333344455678888754433 345677889
Q ss_pred cCeEEEe-cCCHHHHHHHHHhh
Q 025857 183 LGGIVLK-VEDVKAVLALKEYF 203 (247)
Q Consensus 183 ~DGVll~-~~d~~ev~~l~~~~ 203 (247)
++||+++ .+++++++++.+.+
T Consensus 112 a~~ImlP~V~saeea~~~~~~~ 133 (287)
T 2v5j_A 112 TQTLLVPMVQNADEAREAVRAT 133 (287)
T ss_dssp CCEEEESCCCSHHHHHHHHHHT
T ss_pred CCEEEeCCCCCHHHHHHHHHHh
Confidence 9999996 46789988887765
No 5
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=91.52 E-value=0.91 Score=39.81 Aligned_cols=93 Identities=9% Similarity=0.063 Sum_probs=65.3
Q ss_pred CC-eEEEEEEecChhhHhhhccccCCCCeEEEecCCCeeechhhhhhc---ccCCCceEEEEcCCHHHHHHHHHHhhccc
Q 025857 108 DR-RVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVAS---FQGSGKTVFAISKTPSEAQIFLEALEQGL 183 (247)
Q Consensus 108 g~-~va~~~~I~~~e~le~a~~~~~~~~~vVv~~~DWtiIPlENlIA~---~q~~~~~lia~v~~~~EA~val~~LE~G~ 183 (247)
|+ .++.+..+.+++..+.+... ..|+++++..|- ....|.+.+. ++..+..++..++..+... ...+|+.|+
T Consensus 16 g~~~~g~~~~~~~p~~~e~a~~~--GaD~v~lDlE~~-~~~~~~~~~~~~a~~~~~~~~~VRv~~~~~~~-i~~~l~~g~ 91 (267)
T 2vws_A 16 GEVQIGLWLSSTTAYMAEIAATS--GYDWLLIDGEHA-PNTIQDLYHQLQAVAPYASQPVIRPVEGSKPL-IKQVLDIGA 91 (267)
T ss_dssp TCCEEEEEECSCCHHHHHHHHTT--CCSEEEEETTTS-CCCHHHHHHHHHHHTTSSSEEEEECSSCCHHH-HHHHHHTTC
T ss_pred CCCEEEEEEeCCCHHHHHHHHhC--CCCEEEEcCCCC-CCCHHHHHHHHHHHHhCCCcEEEEeCCCCHHH-HHHHHHhCC
Confidence 44 57889999999988887643 589999999885 4455555433 3334556777776433322 356778999
Q ss_pred CeEEEe-cCCHHHHHHHHHhhc
Q 025857 184 GGIVLK-VEDVKAVLALKEYFD 204 (247)
Q Consensus 184 DGVll~-~~d~~ev~~l~~~~~ 204 (247)
|||+++ .+++++++++.+.+.
T Consensus 92 ~~I~~P~V~s~ee~~~~~~~~~ 113 (267)
T 2vws_A 92 QTLLIPMVDTAEQARQVVSATR 113 (267)
T ss_dssp CEEEECCCCSHHHHHHHHHHTS
T ss_pred CEEEeCCCCCHHHHHHHHHHHc
Confidence 999996 467899888877653
No 6
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=91.46 E-value=1.3 Score=38.39 Aligned_cols=89 Identities=17% Similarity=0.176 Sum_probs=65.1
Q ss_pred eEEEEEEecChhhHhhhccccCCCCeEEEecCCCeeechh-----hhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccC
Q 025857 110 RVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAE-----NIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLG 184 (247)
Q Consensus 110 ~va~~~~I~~~e~le~a~~~~~~~~~vVv~~~DWtiIPlE-----NlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~D 184 (247)
.++.+..+.+++.++.+... ..|+++++..|- |.| ..+.+++..+..++..++..+..- ...+|+.|++
T Consensus 20 ~~~~~l~v~~p~~~e~a~~~--gaD~v~lDlEd~---p~~~~~a~~~~~~~~~~~~~~~VRv~~~~~~~-i~~~l~~g~~ 93 (256)
T 1dxe_A 20 QIGCWSALSNPISTEVLGLA--GFDWLVLDGEHA---PNDISTFIPQLMALKGSASAPVVRVPTNEPVI-IKRLLDIGFY 93 (256)
T ss_dssp EEEEEECSCSHHHHHHHTTS--CCSEEEEESSSS---SCCHHHHHHHHHHTTTCSSEEEEECSSSCHHH-HHHHHHTTCC
T ss_pred eEEEEEeCCCHHHHHHHHhC--CCCEEEEcCCCC---CCCHHHHHHHHHHHHhCCCcEEEECCCCCHHH-HHHHHhcCCc
Confidence 47788888888888877643 589999999886 653 445445555556888887554433 5677889999
Q ss_pred eEEEe-cCCHHHHHHHHHhhc
Q 025857 185 GIVLK-VEDVKAVLALKEYFD 204 (247)
Q Consensus 185 GVll~-~~d~~ev~~l~~~~~ 204 (247)
||+++ .+++++++++.+.+.
T Consensus 94 gI~~P~V~s~~ev~~~~~~~~ 114 (256)
T 1dxe_A 94 NFLIPFVETKEEAELAVASTR 114 (256)
T ss_dssp EEEESCCCSHHHHHHHHHTTS
T ss_pred eeeecCcCCHHHHHHHHHHhc
Confidence 99885 467999988888764
No 7
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=90.85 E-value=2.7 Score=36.13 Aligned_cols=112 Identities=13% Similarity=0.109 Sum_probs=72.8
Q ss_pred hhHHHHHHHhCCcEEEecC-cchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEec-ChhhHhhhccccCCCCeEE
Q 025857 60 KQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENIV 137 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~-~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~-~~e~le~a~~~~~~~~~vV 137 (247)
.++..++.+.|+.++-+.+ ++...+++.-++.++.-...+-+. .. +.|. +.++++.+.. ..+|.++
T Consensus 39 ~~~A~a~~~~Ga~~i~~~~~~~i~~ir~~v~~Pvig~~k~d~~~----~~------~~I~~~~~~i~~~~~--~Gad~V~ 106 (232)
T 3igs_A 39 AAMALAAEQAGAVAVRIEGIDNLRMTRSLVSVPIIGIIKRDLDE----SP------VRITPFLDDVDALAQ--AGAAIIA 106 (232)
T ss_dssp HHHHHHHHHTTCSEEEEESHHHHHHHHTTCCSCEEEECBCCCSS----CC------CCBSCSHHHHHHHHH--HTCSEEE
T ss_pred HHHHHHHHHCCCeEEEECCHHHHHHHHHhcCCCEEEEEeecCCC----cc------eEeCccHHHHHHHHH--cCCCEEE
Confidence 6788888999999988864 556666766666654320111010 00 0111 2344444432 3678888
Q ss_pred EecC---CCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 025857 138 IDLP---DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (247)
Q Consensus 138 v~~~---DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll 188 (247)
+... ++ -.++.++..++..+..+++.+.+.+||+.+ ++.|+|.|..
T Consensus 107 l~~~~~~~p--~~l~~~i~~~~~~g~~v~~~v~t~eea~~a---~~~Gad~Ig~ 155 (232)
T 3igs_A 107 VDGTARQRP--VAVEALLARIHHHHLLTMADCSSVDDGLAC---QRLGADIIGT 155 (232)
T ss_dssp EECCSSCCS--SCHHHHHHHHHHTTCEEEEECCSHHHHHHH---HHTTCSEEEC
T ss_pred ECccccCCH--HHHHHHHHHHHHCCCEEEEeCCCHHHHHHH---HhCCCCEEEE
Confidence 8764 34 367888888877778899999999999765 5789999963
No 8
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=90.46 E-value=1.4 Score=37.99 Aligned_cols=107 Identities=21% Similarity=0.171 Sum_probs=62.2
Q ss_pred hhHHHHHHHhCCcEEEecC------c-chHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCC
Q 025857 60 KQVMTAAVERGWNTFVFLS------E-NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 132 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~------~-~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~ 132 (247)
.+-+..+++.|+|.++... + ..+.++...+ .|.. +.+++.+.++.+.+... .
T Consensus 91 ~~~i~~~~~aGad~I~l~~~~~~~p~~l~~~i~~~~~-----------------~g~~--v~~~v~t~eea~~a~~~--G 149 (229)
T 3q58_A 91 LQDVDALAQAGADIIAFDASFRSRPVDIDSLLTRIRL-----------------HGLL--AMADCSTVNEGISCHQK--G 149 (229)
T ss_dssp HHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHH-----------------TTCE--EEEECSSHHHHHHHHHT--T
T ss_pred HHHHHHHHHcCCCEEEECccccCChHHHHHHHHHHHH-----------------CCCE--EEEecCCHHHHHHHHhC--C
Confidence 4457889999999887532 1 1233332222 1222 44577788777666533 5
Q ss_pred CCeEEEecCCCe-----eechhhhhhcccCCCceEEEEc--CCHHHHHHHHHHhhcccCeEEEec
Q 025857 133 AENIVIDLPDWQ-----VIPAENIVASFQGSGKTVFAIS--KTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 133 ~~~vVv~~~DWt-----iIPlENlIA~~q~~~~~lia~v--~~~~EA~val~~LE~G~DGVll~~ 190 (247)
++++.+...+-+ --|--+++.++...+..+++.- +++++++.++ +.|+|||++-+
T Consensus 150 ad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~~ipvIA~GGI~t~~d~~~~~---~~GadgV~VGs 211 (229)
T 3q58_A 150 IEFIGTTLSGYTGPITPVEPDLAMVTQLSHAGCRVIAEGRYNTPALAANAI---EHGAWAVTVGS 211 (229)
T ss_dssp CSEEECTTTTSSSSCCCSSCCHHHHHHHHTTTCCEEEESSCCSHHHHHHHH---HTTCSEEEECH
T ss_pred CCEEEecCccCCCCCcCCCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHH---HcCCCEEEEch
Confidence 777754322211 1232244444433356678774 6899887765 56999999864
No 9
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=90.25 E-value=0.62 Score=38.36 Aligned_cols=115 Identities=20% Similarity=0.204 Sum_probs=64.2
Q ss_pred hhHHHHHHHhCCcEEEecCcc---hHHHhhccceeEEe-eeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCe
Q 025857 60 KQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIALLD-PLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~~~---~e~~~~lg~i~~i~-pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~ 135 (247)
.+.+..+++.|++.+-+...+ .+.++++.+- .. |+.+ +. ..+.++++++.+... .++.
T Consensus 22 ~~~~~~~~~~G~~~i~l~~~~~~~~~~i~~i~~~--~~~~l~v-------------g~-g~~~~~~~i~~a~~~--Gad~ 83 (212)
T 2v82_A 22 LAHVGAVIDAGFDAVEIPLNSPQWEQSIPAIVDA--YGDKALI-------------GA-GTVLKPEQVDALARM--GCQL 83 (212)
T ss_dssp HHHHHHHHHHTCCEEEEETTSTTHHHHHHHHHHH--HTTTSEE-------------EE-ECCCSHHHHHHHHHT--TCCE
T ss_pred HHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHh--CCCCeEE-------------Ee-ccccCHHHHHHHHHc--CCCE
Confidence 677888999999998765322 2223332220 00 2222 11 123466776666543 4677
Q ss_pred EEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC---CHHHHHHHHH
Q 025857 136 IVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE---DVKAVLALKE 201 (247)
Q Consensus 136 vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~---d~~ev~~l~~ 201 (247)
+.+...+ ..++...+..+.+++..+.|++|++.+ .+.|+|.|.+.|. +++.++++++
T Consensus 84 V~~~~~~------~~~~~~~~~~g~~~~~g~~t~~e~~~a---~~~G~d~v~v~~t~~~g~~~~~~l~~ 143 (212)
T 2v82_A 84 IVTPNIH------SEVIRRAVGYGMTVCPGCATATEAFTA---LEAGAQALKIFPSSAFGPQYIKALKA 143 (212)
T ss_dssp EECSSCC------HHHHHHHHHTTCEEECEECSHHHHHHH---HHTTCSEEEETTHHHHCHHHHHHHHT
T ss_pred EEeCCCC------HHHHHHHHHcCCCEEeecCCHHHHHHH---HHCCCCEEEEecCCCCCHHHHHHHHH
Confidence 6544333 223343333345556668999998644 6789999998653 3444444443
No 10
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=89.50 E-value=0.82 Score=42.01 Aligned_cols=91 Identities=19% Similarity=0.224 Sum_probs=64.7
Q ss_pred eEEEEEEecChhhHhhhccccCCCCeEEEecCCCeeechhhhhhcc---cCCC---ceEEEEcCCHHHHHHHHHHhhccc
Q 025857 110 RVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASF---QGSG---KTVFAISKTPSEAQIFLEALEQGL 183 (247)
Q Consensus 110 ~va~~~~I~~~e~le~a~~~~~~~~~vVv~~~DWtiIPlENlIA~~---q~~~---~~lia~v~~~~EA~val~~LE~G~ 183 (247)
.++.+..+.+++.++.+... ..|+++++..|- ....|.+...+ +..+ ..++..+++.+... .-.+|+.|+
T Consensus 43 ~ig~~l~i~~p~~~e~a~~~--GaD~vilDlEha-~~~~e~~~~~l~a~~~~~~~~~~~~VRv~~~~~~d-i~~~LdaGa 118 (339)
T 1izc_A 43 LMGVAHGIPSTFVTKVLAAT--KPDFVWIDVEHG-MFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVS-LSTALDAGA 118 (339)
T ss_dssp EEEEEECSCCHHHHHHHHHT--CCSEEEEETTTS-CCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHH-HHHHHHHTC
T ss_pred EEEEEEECCCHHHHHHHHhC--CCCEEEEECCCC-CCcHHHHHHHHHHhhhcCCCCCeEEEEeCCCCHHH-HHHHHhCCC
Confidence 46788888888888877644 589999998883 44665554333 2112 56888888765543 455778999
Q ss_pred CeEEEe-cCCHHHHHHHHHhhc
Q 025857 184 GGIVLK-VEDVKAVLALKEYFD 204 (247)
Q Consensus 184 DGVll~-~~d~~ev~~l~~~~~ 204 (247)
+||+++ .+++++++++++.+.
T Consensus 119 ~gImlP~V~saee~~~~~~~~~ 140 (339)
T 1izc_A 119 AGIVIPHVETVEEVREFVKEMY 140 (339)
T ss_dssp SEEEETTCCCHHHHHHHHHHHS
T ss_pred CEEEeCCCCCHHHHHHHHHHhc
Confidence 999985 467999998888764
No 11
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=88.56 E-value=0.66 Score=42.80 Aligned_cols=43 Identities=19% Similarity=0.111 Sum_probs=36.5
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 025857 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (247)
Q Consensus 159 ~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~~ 204 (247)
..+|..+|.|.+||+.+ ++.|+|+|+|+.-+++++++..+.+.
T Consensus 231 ~~kIeVEVdtldea~eA---l~aGaD~I~LDn~~~~~l~~av~~l~ 273 (320)
T 3paj_A 231 GKPVEVETETLAELEEA---ISAGADIIMLDNFSLEMMREAVKINA 273 (320)
T ss_dssp TSCEEEEESSHHHHHHH---HHTTCSEEEEESCCHHHHHHHHHHHT
T ss_pred CCeEEEEECCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHhC
Confidence 35789999999998854 56799999999999999988888763
No 12
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=88.10 E-value=2.2 Score=38.19 Aligned_cols=110 Identities=12% Similarity=0.168 Sum_probs=67.9
Q ss_pred eCchhHHHHHHHhCCcEEEecCc-chHH----HhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhc-ccc
Q 025857 57 TESKQVMTAAVERGWNTFVFLSE-NQQL----AIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQ-PAD 130 (247)
Q Consensus 57 ~~~KevvT~ALEsG~d~~v~~~~-~~e~----~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~-~~~ 130 (247)
..+.+++.++-+.|.-+++.... +.+. ++++.+.. ++++++-+-+.++...+.+. ...
T Consensus 37 vs~~~la~av~~aGglG~i~~~~~~~~~l~~~i~~i~~~~----------------~~p~gVnl~~~~~~~~~~~~~~~~ 100 (326)
T 3bo9_A 37 AGTPTLAAAVSEAGGLGIIGSGAMKPDDLRKAISELRQKT----------------DKPFGVNIILVSPWADDLVKVCIE 100 (326)
T ss_dssp TSCHHHHHHHHHTTSBEEEECTTCCHHHHHHHHHHHHTTC----------------SSCEEEEEETTSTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHHHhc----------------CCCEEEEEeccCCCHHHHHHHHHH
Confidence 35688999999999988886531 1222 22221110 12333333332332222221 112
Q ss_pred CCCCeEEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 025857 131 GQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 131 ~~~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
..++.+.+.+.+ | ..++..++..+.+++..+.+.++|+.+ .+.|+|+|++..
T Consensus 101 ~g~d~V~l~~g~----p-~~~~~~l~~~g~~v~~~v~s~~~a~~a---~~~GaD~i~v~g 152 (326)
T 3bo9_A 101 EKVPVVTFGAGN----P-TKYIRELKENGTKVIPVVASDSLARMV---ERAGADAVIAEG 152 (326)
T ss_dssp TTCSEEEEESSC----C-HHHHHHHHHTTCEEEEEESSHHHHHHH---HHTTCSCEEEEC
T ss_pred CCCCEEEECCCC----c-HHHHHHHHHcCCcEEEEcCCHHHHHHH---HHcCCCEEEEEC
Confidence 367888888775 4 456777777778999999999999865 578999999964
No 13
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=87.81 E-value=3.4 Score=36.90 Aligned_cols=122 Identities=15% Similarity=0.223 Sum_probs=73.9
Q ss_pred chhHHHHHHHhCCcEEEecCcc--hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeE
Q 025857 59 SKQVMTAAVERGWNTFVFLSEN--QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~~~~--~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~v 136 (247)
+...+..|.+.|+|+++.-... .+..+++-.... .-| .-+++++.+.++++.+... ..+++
T Consensus 131 d~~qi~ea~~~GAD~VlLi~a~L~~~~l~~l~~~a~-------------~lG--l~~lvevh~~eEl~~A~~~--ga~iI 193 (272)
T 3tsm_A 131 DPYQVYEARSWGADCILIIMASVDDDLAKELEDTAF-------------ALG--MDALIEVHDEAEMERALKL--SSRLL 193 (272)
T ss_dssp STHHHHHHHHTTCSEEEEETTTSCHHHHHHHHHHHH-------------HTT--CEEEEEECSHHHHHHHTTS--CCSEE
T ss_pred CHHHHHHHHHcCCCEEEEcccccCHHHHHHHHHHHH-------------HcC--CeEEEEeCCHHHHHHHHhc--CCCEE
Confidence 4556888999999998864210 112222111111 112 1367889999999887754 46777
Q ss_pred EEecCCCee--ech---hhhhhcccCCCceEEEEc--CCHHHHHHHHHHhhcccCeEEE-----ecCCHHHHHHHHHhh
Q 025857 137 VIDLPDWQV--IPA---ENIVASFQGSGKTVFAIS--KTPSEAQIFLEALEQGLGGIVL-----KVEDVKAVLALKEYF 203 (247)
Q Consensus 137 Vv~~~DWti--IPl---ENlIA~~q~~~~~lia~v--~~~~EA~val~~LE~G~DGVll-----~~~d~~ev~~l~~~~ 203 (247)
=++.+|-+- +.+ +.|+..+.. +.-++++. +++++++.+ ++.|+|||++ +++||.+ .+++++
T Consensus 194 Ginnr~l~t~~~dl~~~~~L~~~ip~-~~~vIaesGI~t~edv~~l---~~~Ga~gvLVG~almr~~d~~~--~~~~l~ 266 (272)
T 3tsm_A 194 GVNNRNLRSFEVNLAVSERLAKMAPS-DRLLVGESGIFTHEDCLRL---EKSGIGTFLIGESLMRQHDVAA--ATRALL 266 (272)
T ss_dssp EEECBCTTTCCBCTHHHHHHHHHSCT-TSEEEEESSCCSHHHHHHH---HTTTCCEEEECHHHHTSSCHHH--HHHHHH
T ss_pred EECCCCCccCCCChHHHHHHHHhCCC-CCcEEEECCCCCHHHHHHH---HHcCCCEEEEcHHHcCCcCHHH--HHHHHH
Confidence 777554322 223 345554432 45677776 699998866 6899999998 4677763 344443
No 14
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=87.43 E-value=2.6 Score=36.23 Aligned_cols=107 Identities=14% Similarity=0.108 Sum_probs=60.0
Q ss_pred hhHHHHHHHhCCcEEEecC------c-chHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCC
Q 025857 60 KQVMTAAVERGWNTFVFLS------E-NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 132 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~------~-~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~ 132 (247)
.+-+..+++.|+|.++... + ..+.++...+ .|.. +.+++.+.++.+.+... .
T Consensus 91 ~~~i~~~~~~Gad~V~l~~~~~~~p~~l~~~i~~~~~-----------------~g~~--v~~~v~t~eea~~a~~~--G 149 (232)
T 3igs_A 91 LDDVDALAQAGAAIIAVDGTARQRPVAVEALLARIHH-----------------HHLL--TMADCSSVDDGLACQRL--G 149 (232)
T ss_dssp HHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHH-----------------TTCE--EEEECCSHHHHHHHHHT--T
T ss_pred HHHHHHHHHcCCCEEEECccccCCHHHHHHHHHHHHH-----------------CCCE--EEEeCCCHHHHHHHHhC--C
Confidence 4457889999999887532 1 1223322221 1222 44567777777666533 5
Q ss_pred CCeEEEecCCCe-----eechhhhhhcccCCCceEEEEc--CCHHHHHHHHHHhhcccCeEEEec
Q 025857 133 AENIVIDLPDWQ-----VIPAENIVASFQGSGKTVFAIS--KTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 133 ~~~vVv~~~DWt-----iIPlENlIA~~q~~~~~lia~v--~~~~EA~val~~LE~G~DGVll~~ 190 (247)
++++.+...+-+ --|--+++.++...+..+++.- ++.++++.++ +.|+|||++-+
T Consensus 150 ad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~~ipvIA~GGI~t~~d~~~~~---~~GadgV~VGs 211 (232)
T 3igs_A 150 ADIIGTTMSGYTTPDTPEEPDLPLVKALHDAGCRVIAEGRYNSPALAAEAI---RYGAWAVTVGS 211 (232)
T ss_dssp CSEEECTTTTSSSSSCCSSCCHHHHHHHHHTTCCEEEESCCCSHHHHHHHH---HTTCSEEEECH
T ss_pred CCEEEEcCccCCCCCCCCCCCHHHHHHHHhcCCcEEEECCCCCHHHHHHHH---HcCCCEEEEeh
Confidence 777654322111 1121123333322255677765 5888887765 56999999864
No 15
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A
Probab=86.36 E-value=1.5 Score=42.35 Aligned_cols=135 Identities=18% Similarity=0.226 Sum_probs=86.5
Q ss_pred CchhHHHHHHHhCCcEEEecC-cchHHHhhccceeEEeeeeecCCceecCC-CCeEEEEEEecChhhHhhhccccCCCCe
Q 025857 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSG-DRRVGSIIEVSTPQELQQLQPADGQAEN 135 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~-~~~e~~~~lg~i~~i~pl~i~~g~~~~~~-g~~va~~~~I~~~e~le~a~~~~~~~~~ 135 (247)
.+++-+..+++.|+|.|.+|. +.++.++++.++ +... |..+..+..|++++.++.+.+.....|-
T Consensus 173 kD~~Di~~~l~~gvD~I~lsfV~saeDv~~~~~~-------------l~~~~~~~i~IiakIEt~eav~nldeI~~~sDg 239 (470)
T 1e0t_A 173 KDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREH-------------LKAHGGENIHIISKIENQEGLNNFDEILEASDG 239 (470)
T ss_dssp HHHHHHHHHHHHTCSEEEESSCCSHHHHHHHHHH-------------HHTTTCTTCEEEEEECSHHHHHTHHHHHHHSSE
T ss_pred CCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHHhcCCCceEEEEECCHHHHHhHHHHHHHCCE
Confidence 367889999999999999874 335555544331 2233 4457789999999999888766666787
Q ss_pred EEEecCCCee-echhh-------hhhcccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC----
Q 025857 136 IVIDLPDWQV-IPAEN-------IVASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (247)
Q Consensus 136 vVv~~~DWti-IPlEN-------lIA~~q~~~~~lia~-----------v~~~~EA~val~~LE~G~DGVll~~~d---- 192 (247)
++|-..|--+ ||+|. +|.+....+.-++.. ..+-.|+--...+.--|+|+|+|+.+.
T Consensus 240 ImVargDLgveig~e~v~~~qk~ii~~araaGkpvI~ATQMLeSMi~~p~PTRAEvsDVanAV~dG~DavMLSgETA~G~ 319 (470)
T 1e0t_A 240 IMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATMMLDSMIKNPRPTDAEAGDVANAILDGTDAVMLSGESAKGK 319 (470)
T ss_dssp EEEEHHHHHHHSCHHHHHHHHHHHHHHHHHHTCEEEEECC---------CCCHHHHHHHHHHHHHTCSEEEECCC-----
T ss_pred EEECchHhhhhcCHHHHHHHHHHHHHHHHHcCCCEEEechhhHhhccCCCccHHHHhhhhHhhhcCccEEEecccccCCC
Confidence 7775433321 44444 444333333223331 124467777888888899999998775
Q ss_pred --HHHHHHHHHhhcc
Q 025857 193 --VKAVLALKEYFDG 205 (247)
Q Consensus 193 --~~ev~~l~~~~~~ 205 (247)
.+.|+-+.+++.+
T Consensus 320 yPveaV~~m~~I~~~ 334 (470)
T 1e0t_A 320 YPLEAVSIMATICER 334 (470)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 4556666666654
No 16
>1sgj_A Citrate lyase, beta subunit; trimer, TIM barrel, structural genomics, PSI, protein structure initiative; 1.84A {Deinococcus radiodurans} SCOP: c.1.12.5
Probab=86.11 E-value=2.7 Score=36.86 Aligned_cols=93 Identities=15% Similarity=0.106 Sum_probs=67.4
Q ss_pred CeEEEEEEecChhhHhhhccccCCCCeEEEecCCCeeec--------hhhhhhcccC-----CCceEEEEcCCHH---HH
Q 025857 109 RRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIP--------AENIVASFQG-----SGKTVFAISKTPS---EA 172 (247)
Q Consensus 109 ~~va~~~~I~~~e~le~a~~~~~~~~~vVv~~~DWtiIP--------lENlIA~~q~-----~~~~lia~v~~~~---EA 172 (247)
.+...|+...+++.++.+.. ..+|.++++..| -+.| .+|+.+.++. .+..++..++..+ ..
T Consensus 8 ~rs~L~~p~~~~~~~~~a~~--~gaD~vilDlEd-av~~~~~~k~~Ar~~v~~~l~~~~~~~~~~~~~VRv~~~~~~~~~ 84 (284)
T 1sgj_A 8 LRSVLFAPGNRADLIAKLPR--SAPDAVVIDLED-AVPGTAEAKAAARPVAHDAARDLIAAAPHLAVFVRVNALHSPYFE 84 (284)
T ss_dssp CSEEEEEETTCHHHHHHTTT--TCCSEEEEESST-TSCSSHHHHHHHHHHHHHHHHHHHHHSTTSEEEEECCCTTSTTHH
T ss_pred CceEEEccCCCHHHHHHHHh--CCCCEEEEECCC-CCCCchhhHHHHHHHHHHHHHhcccccCCCeEEEEeCCCCCHhHH
Confidence 45677888889988877763 358999999998 5677 6788776653 2356788887543 23
Q ss_pred HHHHHHhhcccCeEEEe-cCCHHHHHHHHHhhcc
Q 025857 173 QIFLEALEQGLGGIVLK-VEDVKAVLALKEYFDG 205 (247)
Q Consensus 173 ~val~~LE~G~DGVll~-~~d~~ev~~l~~~~~~ 205 (247)
.-...+|+ |.|||+|+ .++++++.++.+++..
T Consensus 85 ~dl~~~l~-g~~~i~lPkv~s~~~v~~~~~~l~~ 117 (284)
T 1sgj_A 85 DDLSVLTP-ELSGVVVPKLEMGAEARQVAQMLQE 117 (284)
T ss_dssp HHGGGCCT-TSSEEEECSCCSHHHHHHHHHHHHH
T ss_pred HHHHHHhc-cCCEEEeCCCCCHHHHHHHHHHHHh
Confidence 34455667 99999996 4568999888888754
No 17
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=86.01 E-value=2.9 Score=35.57 Aligned_cols=105 Identities=17% Similarity=0.089 Sum_probs=61.9
Q ss_pred hhHHHHHHHhCCcEEEecCcc---hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeE
Q 025857 60 KQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~~~---~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~v 136 (247)
.+++.++++.|++.|=++-.+ .+..+++.+- -| +..+++-. +-+.++.+.+... .++++
T Consensus 31 ~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~---~~------------~~~vgagt-vi~~d~~~~A~~a--GAd~v 92 (214)
T 1wbh_A 31 VPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKE---VP------------EAIVGAGT-VLNPQQLAEVTEA--GAQFA 92 (214)
T ss_dssp HHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHH---CT------------TSEEEEES-CCSHHHHHHHHHH--TCSCE
T ss_pred HHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHH---Cc------------CCEEeeCE-EEEHHHHHHHHHc--CCCEE
Confidence 568999999999987775211 2222222110 01 12223322 5577777777644 47787
Q ss_pred EEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 137 VIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 137 Vv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
+.-..| .|+...- +..+..++..+.|++|++.+ ++.|+|-|-+-|.
T Consensus 93 ~~p~~d---~~v~~~~---~~~g~~~i~G~~t~~e~~~A---~~~Gad~v~~Fpa 138 (214)
T 1wbh_A 93 ISPGLT---EPLLKAA---TEGTIPLIPGISTVSELMLG---MDYGLKEFKFFPA 138 (214)
T ss_dssp EESSCC---HHHHHHH---HHSSSCEEEEESSHHHHHHH---HHTTCCEEEETTT
T ss_pred EcCCCC---HHHHHHH---HHhCCCEEEecCCHHHHHHH---HHCCCCEEEEecC
Confidence 654433 2332222 23334556569999998655 6899999988884
No 18
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=85.86 E-value=1.2 Score=40.36 Aligned_cols=44 Identities=11% Similarity=-0.082 Sum_probs=36.9
Q ss_pred CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 025857 158 SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (247)
Q Consensus 158 ~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~~ 204 (247)
...+|..+|.|.+||+.++ +.|+|.|+|+.-+++++++..+.+.
T Consensus 197 ~~~~IeVEv~tl~ea~eAl---~aGaD~I~LDn~~~~~l~~av~~~~ 240 (287)
T 3tqv_A 197 SNKVVEVEVTNLDELNQAI---AAKADIVMLDNFSGEDIDIAVSIAR 240 (287)
T ss_dssp TTSCEEEEESSHHHHHHHH---HTTCSEEEEESCCHHHHHHHHHHHT
T ss_pred CCCcEEEEeCCHHHHHHHH---HcCCCEEEEcCCCHHHHHHHHHhhc
Confidence 3468999999999987654 5799999999999999988887663
No 19
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=85.75 E-value=0.59 Score=41.08 Aligned_cols=141 Identities=11% Similarity=0.043 Sum_probs=86.2
Q ss_pred cEEEEEe-CchhHHHHHHHhCCcEEEecCcc----hHHHhh------ccceeEEeeeeecCC---cee--cCCCCeEEEE
Q 025857 51 KRVWIWT-ESKQVMTAAVERGWNTFVFLSEN----QQLAID------WSTIALLDPLFIKEG---EVY--DSGDRRVGSI 114 (247)
Q Consensus 51 K~vWiW~-~~KevvT~ALEsG~d~~v~~~~~----~e~~~~------lg~i~~i~pl~i~~g---~~~--~~~g~~va~~ 114 (247)
--.|+.. .+.+.+..|..+|+|.+++.=|| .+++.. .+....+ +.+++. ++. -.-|..--.+
T Consensus 17 ~g~~~~~~~~p~~~e~a~~~g~D~vilDlEhav~~~~k~~~~l~a~~~~~~~~~--VRVn~~~~~di~~~ld~G~~gI~l 94 (261)
T 3qz6_A 17 VGTMLNLVYNPDIVRIYAEAGLDYFIVDCEHAAYTFREINHLVSVAKNAGVSVL--VRIPQVDRAHVQRLLDIGAEGFMI 94 (261)
T ss_dssp EEEEESSCCCTTHHHHHHHTTCSEEEEESSSSCCCHHHHHHHHHHHHHHTCEEE--EECSSCCHHHHHHHHHHTCCEEEE
T ss_pred EEEEEecCCCHHHHHHHhcCCcCEEEEeccCCCCCHHHHHHHHHHHhhcCCeEE--EEeCCCCHHHHHHHHhcCCCEEEE
Confidence 3478888 88999999999999999986555 222221 1111110 122221 110 0113222334
Q ss_pred EEecChhhHhhhccccCCCC-----eEEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhh-cccCeEEE
Q 025857 115 IEVSTPQELQQLQPADGQAE-----NIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALE-QGLGGIVL 188 (247)
Q Consensus 115 ~~I~~~e~le~a~~~~~~~~-----~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE-~G~DGVll 188 (247)
-.|.++++.+.+....+..+ +-......|-..|+.+-++... .+..+++-+.+++-...+-+++. .|+||+.+
T Consensus 95 P~v~saed~~~~~~~~~~~p~G~Rg~~~~r~~~~g~~~~~~y~~~~~-~~~~v~~mIEt~~av~~~~eIaa~~~vd~l~i 173 (261)
T 3qz6_A 95 PGVQSAETMRETVRLAKYPPLGERGVGGSIVTDFKPVNWAEWVQERN-DEIFIMAQIEHVKAVEDIDSILAVQGVDAVIF 173 (261)
T ss_dssp TTCCSHHHHHHHHHHHSCTTTCCCCCCCGGGGTTCCCCHHHHHHHHH-TTCEEEEEECCHHHHHTHHHHHTSTTCCEEEE
T ss_pred CCcCCHHHHHHHHHHhccCCCCCcCcccchhhhccccchhhHHhcCC-CCeEEEEEECCHHHHHHHHHHhCCCCCCEEEE
Confidence 46788888887754432110 0011233555556677666543 35789999999999999999997 49999999
Q ss_pred ecCCHH
Q 025857 189 KVEDVK 194 (247)
Q Consensus 189 ~~~d~~ 194 (247)
-+.|..
T Consensus 174 G~~DL~ 179 (261)
T 3qz6_A 174 GPRDLS 179 (261)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 887654
No 20
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=85.54 E-value=2.7 Score=36.09 Aligned_cols=105 Identities=15% Similarity=0.098 Sum_probs=60.9
Q ss_pred hhHHHHHHHhCCcEEEecCcc---hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeE
Q 025857 60 KQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~~~---~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~v 136 (247)
.+++.++++.|++.|=++-.+ .+..+++.+- -| +..+++-. +.++++.+.+... .++++
T Consensus 32 ~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~---~~------------~l~vgaGt-vl~~d~~~~A~~a--GAd~v 93 (224)
T 1vhc_A 32 LPLADTLAKNGLSVAEITFRSEAAADAIRLLRAN---RP------------DFLIAAGT-VLTAEQVVLAKSS--GADFV 93 (224)
T ss_dssp HHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHH---CT------------TCEEEEES-CCSHHHHHHHHHH--TCSEE
T ss_pred HHHHHHHHHcCCCEEEEeccCchHHHHHHHHHHh---Cc------------CcEEeeCc-EeeHHHHHHHHHC--CCCEE
Confidence 578999999999987775211 2222222210 01 12222322 4467777776544 47887
Q ss_pred EEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 137 VIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 137 Vv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
+.-..| .| ++......+..++..+.|++|++. +++.|+|-|-+-|.
T Consensus 94 ~~p~~d---~~---v~~~ar~~g~~~i~Gv~t~~e~~~---A~~~Gad~vk~Fpa 139 (224)
T 1vhc_A 94 VTPGLN---PK---IVKLCQDLNFPITPGVNNPMAIEI---ALEMGISAVKFFPA 139 (224)
T ss_dssp ECSSCC---HH---HHHHHHHTTCCEECEECSHHHHHH---HHHTTCCEEEETTT
T ss_pred EECCCC---HH---HHHHHHHhCCCEEeccCCHHHHHH---HHHCCCCEEEEeeC
Confidence 644434 22 222222334445556999999865 56899999988884
No 21
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A
Probab=85.41 E-value=0.4 Score=46.58 Aligned_cols=135 Identities=17% Similarity=0.220 Sum_probs=82.7
Q ss_pred CchhHHHHHHHhCCcEEEecC-cchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeE
Q 025857 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~-~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~v 136 (247)
.+++-+..|++.|+|+|++|. ++++.++++.++ +...|..+..+..|++++.++.+.+.....|-+
T Consensus 194 ~D~~DI~~~l~~g~d~I~lpfV~saeDv~~~~~~-------------l~~~~~~i~IiakIEt~eav~nldeI~~~~DgI 260 (500)
T 1a3w_A 194 KDKEDLRFGVKNGVHMVFASFIRTANDVLTIREV-------------LGEQGKDVKIIVKIENQQGVNNFDEILKVTDGV 260 (500)
T ss_dssp HHHHHHHHHHHHTCSEEEECSCCSHHHHHHHHHH-------------HHHHHTTSEEEEEECSSHHHHSHHHHHHHSSEE
T ss_pred hHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHhcCCCcEEEEEECChHHHHhHHHHHHhCCEE
Confidence 467889999999999999875 445555544321 111123567888999999888776555556766
Q ss_pred EEecCCCee-ech-------hhhhhcccCCCceEEE---------EcC--CHHHHHHHHHHhhcccCeEEEecCC-----
Q 025857 137 VIDLPDWQV-IPA-------ENIVASFQGSGKTVFA---------ISK--TPSEAQIFLEALEQGLGGIVLKVED----- 192 (247)
Q Consensus 137 Vv~~~DWti-IPl-------ENlIA~~q~~~~~lia---------~v~--~~~EA~val~~LE~G~DGVll~~~d----- 192 (247)
++-..|--+ ||. +.+|.+....+.-++. ... +-.|+--+..+...|+|.|+|..+.
T Consensus 261 mvgrgDLgvelg~~~v~~aqk~ii~aaraaGkpvi~ATQMLeSMi~~~~ptraEvsdva~av~~G~d~vmLs~eta~G~y 340 (500)
T 1a3w_A 261 MVARGDLGIEIPAPEVLAVQKKLIAKSNLAGKPVICATQMLESMTYNPRPTRAEVSDVGNAILDGADCVMLSGETAKGNY 340 (500)
T ss_dssp EECHHHHHHHTTGGGHHHHHHHHHHHHHHHTCCEEECSSTTGGGGSCSSCCHHHHHHHHHHHHHTCSEECBSTTTTTCSC
T ss_pred EECchHhhhhcCcHHHHHHHHHHHHHHHhcCCCEEEEeehhhhhccCCCchHHHHHHHHHHHHhCCCEEEecchhhcchh
Confidence 654322211 233 3344443333333342 222 3445556788888999999998775
Q ss_pred -HHHHHHHHHhhcc
Q 025857 193 -VKAVLALKEYFDG 205 (247)
Q Consensus 193 -~~ev~~l~~~~~~ 205 (247)
.+.|+-+.+++.+
T Consensus 341 PveaV~~m~~I~~~ 354 (500)
T 1a3w_A 341 PINAVTTMAETAVI 354 (500)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 4456666665543
No 22
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=85.25 E-value=1.3 Score=40.51 Aligned_cols=43 Identities=9% Similarity=0.089 Sum_probs=36.8
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 025857 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (247)
Q Consensus 159 ~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~~ 204 (247)
..+|..+|.|.+||+.++ +.|+|.|+|+.=+++++++..+.+.
T Consensus 207 ~~kIeVEv~tl~e~~eAl---~aGaDiImLDn~s~~~l~~av~~~~ 249 (300)
T 3l0g_A 207 NEYIAIECDNISQVEESL---SNNVDMILLDNMSISEIKKAVDIVN 249 (300)
T ss_dssp SCCEEEEESSHHHHHHHH---HTTCSEEEEESCCHHHHHHHHHHHT
T ss_pred CCCEEEEECCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHhhc
Confidence 468999999999988765 5699999999999999988887664
No 23
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=84.41 E-value=1.9 Score=38.88 Aligned_cols=42 Identities=12% Similarity=0.070 Sum_probs=36.6
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 025857 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (247)
Q Consensus 160 ~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~~ 204 (247)
.+|..+|.|.+||+.+ ++.|+|.|+|++=+++++++..+.+.
T Consensus 194 ~~I~VEV~tleea~eA---~~aGaD~I~LDn~~~e~l~~av~~l~ 235 (285)
T 1o4u_A 194 TKIEVEVENLEDALRA---VEAGADIVMLDNLSPEEVKDISRRIK 235 (285)
T ss_dssp SCEEEEESSHHHHHHH---HHTTCSEEEEESCCHHHHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHhh
Confidence 5789999999999876 56799999999999999988887764
No 24
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=84.13 E-value=4.6 Score=35.63 Aligned_cols=106 Identities=13% Similarity=0.092 Sum_probs=57.9
Q ss_pred hhHHHHHHHhCCcEEEecC---cc-hHHHh---hc--cceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhcccc
Q 025857 60 KQVMTAAVERGWNTFVFLS---EN-QQLAI---DW--STIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPAD 130 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~---~~-~e~~~---~l--g~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~ 130 (247)
...+..+.|.|+|++++++ ++ .+..+ +. ..|-+++| .++.+.++......
T Consensus 109 ~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~~~~gl~~i~liap---------------------~s~~eri~~ia~~~ 167 (271)
T 1ujp_A 109 ERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAP---------------------TSTDARIATVVRHA 167 (271)
T ss_dssp HHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECT---------------------TCCHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHHcCCceEEEeCC---------------------CCCHHHHHHHHHhC
Confidence 5667889999999999874 11 12211 11 12222222 13445556666555
Q ss_pred CCCCeEE----EecCCCe-eechhhhhhcccCC-CceEEEE--cCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 131 GQAENIV----IDLPDWQ-VIPAENIVASFQGS-GKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 131 ~~~~~vV----v~~~DWt-iIPlENlIA~~q~~-~~~lia~--v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
....|++ +.+.+-. --|++.+++++.+. +..|+.. ++++++|+.+ .|+|||++-+-
T Consensus 168 ~gfiy~vs~~G~TG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGI~t~e~a~~~-----~~ADgVIVGSA 231 (271)
T 1ujp_A 168 TGFVYAVSVTGVTGMRERLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQA-----AVADGVVVGSA 231 (271)
T ss_dssp CSCEEEECC------------CCHHHHHHHHTTCCSCEEEESCCCSHHHHHHH-----TTSSEEEECHH
T ss_pred CCCEEEEecCcccCCCCCCCccHHHHHHHHHhhcCCCEEEEcCCCCHHHHHHh-----cCCCEEEEChH
Confidence 5555544 2222211 24566677766543 3345444 4789999884 89999999764
No 25
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=83.97 E-value=0.75 Score=42.27 Aligned_cols=140 Identities=14% Similarity=0.216 Sum_probs=84.3
Q ss_pred cEEEEEeC--chhHHHHHHHhCCcEEEecC-cchHHHhhccceeEEeeeeecC--------C-----------ceecCCC
Q 025857 51 KRVWIWTE--SKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKE--------G-----------EVYDSGD 108 (247)
Q Consensus 51 K~vWiW~~--~KevvT~ALEsG~d~~v~~~-~~~e~~~~lg~i~~i~pl~i~~--------g-----------~~~~~~g 108 (247)
+.+||-.- +...+..+|+.|+++|++|. ++.+.++++.+.....|+-..+ | +.+...+
T Consensus 96 ~~~~VRv~~~~~~di~~~LdaGa~gImlP~V~saee~~~~~~~~~~~p~g~Rg~~~~a~~~G~~~~~~~~~~~~y~~~a~ 175 (339)
T 1izc_A 96 SLVIVRVPKHDEVSLSTALDAGAAGIVIPHVETVEEVREFVKEMYYGPIGRRSFSPWTFSPGIADASLFPNDPYNVATSN 175 (339)
T ss_dssp SEEEEECCTTCHHHHHHHHHHTCSEEEETTCCCHHHHHHHHHHHSCTTTCCCCCCSTTCBTTTBCCCSSTTCTTCHHHHH
T ss_pred CeEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHhccCccCcccccchhhcccccccccccchhhhhhhcC
Confidence 56888652 56788999999999999986 4456665554432222211110 0 0000002
Q ss_pred CeEEEEEEecChhhHhhhccccC--CCCeEEEecCCCe------------------ee-chhhhhhcccCCCceEEEEcC
Q 025857 109 RRVGSIIEVSTPQELQQLQPADG--QAENIVIDLPDWQ------------------VI-PAENIVASFQGSGKTVFAISK 167 (247)
Q Consensus 109 ~~va~~~~I~~~e~le~a~~~~~--~~~~vVv~~~DWt------------------iI-PlENlIA~~q~~~~~lia~v~ 167 (247)
..+.++..|++++-++.+..... +.+.+.+-..|-. +. -++.++.+....+..+.....
T Consensus 176 ~~i~vi~mIEt~~av~nldeIaa~~~vD~l~iG~~DLs~~~~~~~~~~lG~~~~p~v~~a~~~iv~aaraaGk~~g~~~~ 255 (339)
T 1izc_A 176 NHVCIIPQIESVKGVENVDAIAAMPEIHGLMFGPGDYMIDAGLDLNGALSGVPHPTFVEAMTKFSTAAQRNGVPIFGGAL 255 (339)
T ss_dssp HHCEEEEEECSHHHHHTHHHHHTCTTCCCEEECHHHHHHHTTCCTTCCTTSCCCHHHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred cCceEEEEEChHHHHHHHHHHhcCCCCCEEEECHHHHHhhhhcccchhhCCCCCHHHHHHHHHHHHHHHHhCCceeEecC
Confidence 35678999999999888865543 4777665432221 11 124455554454545566668
Q ss_pred CHHHHHHHHHHhhcccCeEEEecCCHH
Q 025857 168 TPSEAQIFLEALEQGLGGIVLKVEDVK 194 (247)
Q Consensus 168 ~~~EA~val~~LE~G~DGVll~~~d~~ 194 (247)
|+++++. .++.|.+++++.+ |..
T Consensus 256 d~~~a~~---~~~~Gf~~l~~~~-di~ 278 (339)
T 1izc_A 256 SVDMVPS---LIEQGYRAIAVQF-DVW 278 (339)
T ss_dssp SGGGHHH---HHHTTEEEEEEEE-HHH
T ss_pred CHHHHHH---HHHhCCCEEEecH-HHH
Confidence 8877765 5689999988877 443
No 26
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=83.96 E-value=4.7 Score=33.97 Aligned_cols=142 Identities=14% Similarity=0.118 Sum_probs=72.4
Q ss_pred EEEEe--CchhHHHHHHHhCCcEEEecCcchHHHhhccce------eEEeeeeecCCc--------eecCCCCeEEEEEE
Q 025857 53 VWIWT--ESKQVMTAAVERGWNTFVFLSENQQLAIDWSTI------ALLDPLFIKEGE--------VYDSGDRRVGSIIE 116 (247)
Q Consensus 53 vWiW~--~~KevvT~ALEsG~d~~v~~~~~~e~~~~lg~i------~~i~pl~i~~g~--------~~~~~g~~va~~~~ 116 (247)
+.+-+ .+.+....|++.|++.++..+...........+ ..+..+++||.. .+...|..+ ..
T Consensus 77 vi~lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~~~~~~~~~~~~~~~~~~~~ILivDD~~~~~~~l~~~L~~~~~~v---~~ 153 (259)
T 3luf_A 77 VVILTADISEDKREAWLEAGVLDYVMKDSRHSLQYAVGLVHRLYLNQQIEVLVVDDSRTSRHRTMAQLRKQLLQV---HE 153 (259)
T ss_dssp EEEEECC-CHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHTTTCEE---EE
T ss_pred EEEEEccCCHHHHHHHHHCCCcEEEeCCchhHHHHHHHhhhhHhhcCCCcEEEEeCCHHHHHHHHHHHHHcCcEE---EE
Confidence 55555 367888899999999999875322211111111 112235666642 234455432 34
Q ss_pred ecChhhHhhhccccCCCCeEEEecCCCeeechh---hhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 025857 117 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAE---NIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (247)
Q Consensus 117 I~~~e~le~a~~~~~~~~~vVv~~~DWtiIPlE---NlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~ 193 (247)
..+.++.-.........+-++++..=+..=-+| .|-+.....+..|+....+ ++......+++.|++|.+.+|-++
T Consensus 154 a~~~~eal~~l~~~~~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~ii~~s~~-~~~~~~~~a~~~Ga~~yl~KP~~~ 232 (259)
T 3luf_A 154 ASHAREALATLEQHPAIRLVLVDYYMPEIDGISLVRMLRERYSKQQLAIIGISVS-DKRGLSARYLKQGANDFLNQPFEP 232 (259)
T ss_dssp ESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSEEEEEECS-SSSSHHHHHHHTTCSEEEESSCCH
T ss_pred eCCHHHHHHHHhcCCCCCEEEEcCCCCCCCHHHHHHHHHhccCCCCCeEEEEEcc-CCHHHHHHHHhcChhheEcCCCCH
Confidence 555544322221111235555554322211111 2222211234455544433 223345678899999999999999
Q ss_pred HHHHH
Q 025857 194 KAVLA 198 (247)
Q Consensus 194 ~ev~~ 198 (247)
+++..
T Consensus 233 ~~L~~ 237 (259)
T 3luf_A 233 EELQC 237 (259)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98753
No 27
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=83.93 E-value=4 Score=32.98 Aligned_cols=118 Identities=20% Similarity=0.162 Sum_probs=60.8
Q ss_pred hHHHHHHHhCCcEEEecCc--chHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeEEE
Q 025857 61 QVMTAAVERGWNTFVFLSE--NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (247)
Q Consensus 61 evvT~ALEsG~d~~v~~~~--~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vVv 138 (247)
+.+..|++.|+|.+.++.. ..+.++++. + +.. ..+.+.++++...+. ...++++++
T Consensus 77 ~~~~~a~~~gad~v~l~~~~~~~~~~~~~~------~------------~~~--~~v~~~t~~e~~~~~--~~g~d~i~~ 134 (215)
T 1xi3_A 77 DRVDVALAVDADGVQLGPEDMPIEVAKEIA------P------------NLI--IGASVYSLEEALEAE--KKGADYLGA 134 (215)
T ss_dssp SCHHHHHHHTCSEEEECTTSCCHHHHHHHC------T------------TSE--EEEEESSHHHHHHHH--HHTCSEEEE
T ss_pred ChHHHHHHcCCCEEEECCccCCHHHHHHhC------C------------CCE--EEEecCCHHHHHHHH--hcCCCEEEE
Confidence 3456788889998887632 233333321 1 222 233456777765443 235899887
Q ss_pred ecCCC-------eeechhhhhhccc-CCCceEEEEcC-CHHHHHHHHHHhhcccCeEEEec-----CCH-HHHHHHHHhh
Q 025857 139 DLPDW-------QVIPAENIVASFQ-GSGKTVFAISK-TPSEAQIFLEALEQGLGGIVLKV-----EDV-KAVLALKEYF 203 (247)
Q Consensus 139 ~~~DW-------tiIPlENlIA~~q-~~~~~lia~v~-~~~EA~val~~LE~G~DGVll~~-----~d~-~ev~~l~~~~ 203 (247)
...-. ....++ .+.++. ..+..+++.-. +.+.++. +++.|+|||.+-+ +|+ ..++++++.+
T Consensus 135 ~~~~~~~~~~~~~~~~~~-~l~~l~~~~~~pvia~GGI~~~nv~~---~~~~Ga~gv~vgs~i~~~~d~~~~~~~~~~~~ 210 (215)
T 1xi3_A 135 GSVFPTKTKEDARVIGLE-GLRKIVESVKIPVVAIGGINKDNARE---VLKTGVDGIAVISAVMGAEDVRKATEELRKIV 210 (215)
T ss_dssp ECSSCC----CCCCCHHH-HHHHHHHHCSSCEEEESSCCTTTHHH---HHTTTCSEEEESHHHHTSSSHHHHHHHHHHHH
T ss_pred cCCccCCCCCCCCCcCHH-HHHHHHHhCCCCEEEECCcCHHHHHH---HHHcCCCEEEEhHHHhCCCCHHHHHHHHHHHH
Confidence 53111 111222 222221 11334554321 2555554 4578999998764 566 3666666554
Q ss_pred c
Q 025857 204 D 204 (247)
Q Consensus 204 ~ 204 (247)
.
T Consensus 211 ~ 211 (215)
T 1xi3_A 211 E 211 (215)
T ss_dssp H
T ss_pred h
Confidence 3
No 28
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=83.71 E-value=0.7 Score=41.59 Aligned_cols=71 Identities=14% Similarity=0.032 Sum_probs=36.3
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhccc-------c-cccceeeeEEEEEEEEEecCCcce
Q 025857 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGR-------N-EVSNLLSLMKATVTRVDVAGMGDR 231 (247)
Q Consensus 160 ~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~~~~-------~-~~~~~l~L~~AtVT~V~~vGmGDR 231 (247)
.+++..+.+++|++.++ +.|+|+|.|++-++++++++++.+... + ..++.+ .+-+|.++...|. |+
T Consensus 200 ~~i~vev~tlee~~~A~---~aGaD~I~ld~~~~~~l~~~v~~l~~~~~g~~~v~I~ASGGI--t~~ni~~~~~~Gv-D~ 273 (294)
T 3c2e_A 200 VKIEVECLSEDEATEAI---EAGADVIMLDNFKGDGLKMCAQSLKNKWNGKKHFLLECSGGL--NLDNLEEYLCDDI-DI 273 (294)
T ss_dssp SCEEEECSSSHHHHHHH---HHTCSEEECCC---------------------CCEEEEECCC--CC------CCCSC-SE
T ss_pred CeEEEecCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHhcccccCCCCeEEEEECCC--CHHHHHHHHHcCC-CE
Confidence 57899999999988665 579999999999999888877766421 1 234444 4567778888886 77
Q ss_pred eeeec
Q 025857 232 VCVDL 236 (247)
Q Consensus 232 VCVDT 236 (247)
+.|=+
T Consensus 274 i~vGs 278 (294)
T 3c2e_A 274 YSTSS 278 (294)
T ss_dssp EECGG
T ss_pred EEEec
Confidence 76643
No 29
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=83.60 E-value=5.2 Score=34.61 Aligned_cols=139 Identities=12% Similarity=0.022 Sum_probs=75.4
Q ss_pred EEEEEeCchhHHHHHHHhCCcEEEecCcc----hHHHhhccceeEE--ee--eeecCC------ceecCCCCeEEEEEEe
Q 025857 52 RVWIWTESKQVMTAAVERGWNTFVFLSEN----QQLAIDWSTIALL--DP--LFIKEG------EVYDSGDRRVGSIIEV 117 (247)
Q Consensus 52 ~vWiW~~~KevvT~ALEsG~d~~v~~~~~----~e~~~~lg~i~~i--~p--l~i~~g------~~~~~~g~~va~~~~I 117 (247)
..|....+.+.+..|..+|+|.+++.-|| ++.++..-+...- .| +.+++. ..++ -|..--.+-.|
T Consensus 22 ~~~l~v~~p~~~e~a~~~gaD~v~lDlEd~p~~~~~a~~~~~~~~~~~~~~~VRv~~~~~~~i~~~l~-~g~~gI~~P~V 100 (256)
T 1dxe_A 22 GCWSALSNPISTEVLGLAGFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLD-IGFYNFLIPFV 100 (256)
T ss_dssp EEEECSCSHHHHHHHTTSCCSEEEEESSSSSCCHHHHHHHHHHTTTCSSEEEEECSSSCHHHHHHHHH-TTCCEEEESCC
T ss_pred EEEEeCCCHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCCHHHHHHHHh-cCCceeeecCc
Confidence 46777788999999999999988875443 4433322110000 01 111111 1111 12222233456
Q ss_pred cChhhHhhhccccCCCCe---EE---EecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhc-ccCeEEEec
Q 025857 118 STPQELQQLQPADGQAEN---IV---IDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQ-GLGGIVLKV 190 (247)
Q Consensus 118 ~~~e~le~a~~~~~~~~~---vV---v~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~-G~DGVll~~ 190 (247)
.+.++++.+....+.... =+ .....|. +++..+... +.+..|++-+.+++-...+-+++.. |+||+.+-|
T Consensus 101 ~s~~ev~~~~~~~~~~p~g~Rg~~~~~~~~~~g--~~~~~~~~~-~~~~~v~~~IEt~~av~~~~eIa~~~~vd~l~iG~ 177 (256)
T 1dxe_A 101 ETKEEAELAVASTRYPPEGIRGVSVSHRANMFG--TVADYFAQS-NKNITILVQIESQQGVDNVDAIAATEGVDGIFVGP 177 (256)
T ss_dssp CSHHHHHHHHHTTSCTTTCCCCCCSSSGGGGGG--TSTTHHHHH-TTSCEEEEEECSHHHHHTHHHHHTSTTCCEEEECH
T ss_pred CCHHHHHHHHHHhcCCCCCccCCCcchhhhhcC--chHHHHHhc-CcccEEEEEECCHHHHHhHHHHhCCCCCCEEEECh
Confidence 666666655433321000 00 0011122 123333332 3356899999999999999999975 999999988
Q ss_pred CCHH
Q 025857 191 EDVK 194 (247)
Q Consensus 191 ~d~~ 194 (247)
.|..
T Consensus 178 ~DL~ 181 (256)
T 1dxe_A 178 SDLA 181 (256)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
No 30
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=83.38 E-value=4 Score=36.14 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=40.1
Q ss_pred CCCeEEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
..+.+.+.+.+ | ..++..+++.+.+++..+.+.++|+. ..+.|+|+|++..
T Consensus 96 g~d~V~~~~g~----p-~~~~~~l~~~gi~vi~~v~t~~~a~~---~~~~GaD~i~v~g 146 (328)
T 2gjl_A 96 GIRVVETAGND----P-GEHIAEFRRHGVKVIHKCTAVRHALK---AERLGVDAVSIDG 146 (328)
T ss_dssp TCCEEEEEESC----C-HHHHHHHHHTTCEEEEEESSHHHHHH---HHHTTCSEEEEEC
T ss_pred CCCEEEEcCCC----c-HHHHHHHHHcCCCEEeeCCCHHHHHH---HHHcCCCEEEEEC
Confidence 57888888765 4 46677777667889999999999875 5578999999954
No 31
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=83.28 E-value=2.1 Score=38.61 Aligned_cols=41 Identities=15% Similarity=0.033 Sum_probs=36.0
Q ss_pred eEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 025857 161 TVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (247)
Q Consensus 161 ~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~~ 204 (247)
+++.++.+++|++.+ ++.|+|+|.|++-++++++++++.+.
T Consensus 210 kI~vev~tlee~~eA---~~aGaD~I~ld~~~~e~l~~~v~~~~ 250 (296)
T 1qap_A 210 PVEVEVENLDELDDA---LKAGADIIMLDNFNTDQMREAVKRVN 250 (296)
T ss_dssp CEEEEESSHHHHHHH---HHTTCSEEEESSCCHHHHHHHHHTTC
T ss_pred cEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHhC
Confidence 799999999998776 57799999999999999988887663
No 32
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum}
Probab=83.12 E-value=1.5 Score=42.32 Aligned_cols=135 Identities=12% Similarity=0.099 Sum_probs=88.1
Q ss_pred CchhHHH--HHHHhCCcEEEecC-cchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCC
Q 025857 58 ESKQVMT--AAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAE 134 (247)
Q Consensus 58 ~~KevvT--~ALEsG~d~~v~~~-~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~ 134 (247)
.|++-+. .|+|.|+|.|.++- ..++.++++.+ ++...|..+..+..|++++.++.+.+.....|
T Consensus 182 kD~~dl~~~~~~~~~vD~Ia~SfVr~a~Dv~~~r~-------------~l~~~g~~~~iiaKIE~~eav~nldeIl~~sD 248 (461)
T 3qtg_A 182 EDVEALKAISPIRDNIDYVAISLAKSCKDVDSVRS-------------LLTELGFQSQVAVKIETKGAVNNLEELVQCSD 248 (461)
T ss_dssp HHHHHHHHHGGGGGGCCEEEECSCCSHHHHHHHHH-------------HHHHTTCCCEEEEEECSHHHHHTHHHHHHTCS
T ss_pred HHHHHHHHHHHhhcCCCEEEecCCCCHHHHHHHHH-------------HHHhcCCCceEEEEECCHHHHHhHHHHHHhcc
Confidence 4678888 89999999888652 23444444322 22333455778999999999988877666788
Q ss_pred eEEEecCCCe-eechhhh-------hhcccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC---
Q 025857 135 NIVIDLPDWQ-VIPAENI-------VASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED--- 192 (247)
Q Consensus 135 ~vVv~~~DWt-iIPlENl-------IA~~q~~~~~lia~-----------v~~~~EA~val~~LE~G~DGVll~~~d--- 192 (247)
-++|-..|-- =||+|.+ |.+....+.-++.. ..+-.|+--...+.--|+|+|+|..+.
T Consensus 249 gImVaRGDLgvei~~e~v~~~Qk~ii~~~~~~gkpvi~ATQMLeSMi~~p~PTRAEvsDVanAV~dGaDavMLSgETA~G 328 (461)
T 3qtg_A 249 YVVVARGDLGLHYGLDALPIVQRRIVHTSLKYGKPIAVATQLLDSMQSSPIPTRAEINDVFTTASMGVDSLWLTNETASG 328 (461)
T ss_dssp EEEEEHHHHTTTSCTTTHHHHHHHHHHHHHHTTCCEEEESSSSGGGGTCSSCCHHHHHHHHHHHHTTCSEEEECHHHHTS
T ss_pred cEEEccccccccCCHHHHHHHHHHHHHHHHHhCCCEEEeccchHhhccCCCccHHHHHHHHHHHHhCCcEEEEcccccCC
Confidence 8777543321 1355553 33333333333431 246778888899999999999998543
Q ss_pred ---HHHHHHHHHhhcc
Q 025857 193 ---VKAVLALKEYFDG 205 (247)
Q Consensus 193 ---~~ev~~l~~~~~~ 205 (247)
.+.|+-+.+++.+
T Consensus 329 ~yPveaV~~m~~I~~~ 344 (461)
T 3qtg_A 329 KYPLAAVSWLSRILMN 344 (461)
T ss_dssp SCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHH
Confidence 4667677777654
No 33
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=82.63 E-value=6 Score=37.58 Aligned_cols=115 Identities=15% Similarity=0.148 Sum_probs=69.5
Q ss_pred EeCchhHHHHHHHhCCcEEEecCcc------hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccc
Q 025857 56 WTESKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (247)
Q Consensus 56 W~~~KevvT~ALEsG~d~~v~~~~~------~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~ 129 (247)
+.+..+.+...+|.|+|.+.+...+ .+.++++.+. .| +.++. ...+.+.++.+.+..
T Consensus 227 ~~~~~~~a~~l~~aG~d~I~id~a~g~~~~~~~~v~~i~~~---~p------------~~~Vi-~g~v~t~e~a~~l~~- 289 (490)
T 4avf_A 227 GADTGERVAALVAAGVDVVVVDTAHGHSKGVIERVRWVKQT---FP------------DVQVI-GGNIATAEAAKALAE- 289 (490)
T ss_dssp STTHHHHHHHHHHTTCSEEEEECSCCSBHHHHHHHHHHHHH---CT------------TSEEE-EEEECSHHHHHHHHH-
T ss_pred ccchHHHHHHHhhcccceEEecccCCcchhHHHHHHHHHHH---CC------------CceEE-EeeeCcHHHHHHHHH-
Confidence 3356889999999999988874321 1233332211 01 11211 235677777666554
Q ss_pred cCCCCeEEEecC-----------CC---eeechhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 130 DGQAENIVIDLP-----------DW---QVIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 130 ~~~~~~vVv~~~-----------DW---tiIPlENlIA~~q~~~~~lia--~v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
..+|.+++-.. +| ++--+.++..+++..+..||+ .+.+.+++..++. .|+|||++-+-
T Consensus 290 -aGaD~I~vg~g~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~---~GAd~V~vGs~ 363 (490)
T 4avf_A 290 -AGADAVKVGIGPGSICTTRIVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMV---AGAYCVMMGSM 363 (490)
T ss_dssp -TTCSEEEECSSCSTTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHH---HTCSEEEECTT
T ss_pred -cCCCEEEECCCCCcCCCccccCCCCccHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHH---cCCCeeeecHH
Confidence 35888887311 22 222234555544455677898 6889999888764 59999999754
No 34
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=82.62 E-value=2.9 Score=33.98 Aligned_cols=118 Identities=19% Similarity=0.158 Sum_probs=70.3
Q ss_pred hhHHHHHHHhCCcEEEec--Ccch-HHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeE
Q 025857 60 KQVMTAAVERGWNTFVFL--SENQ-QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~--~~~~-e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~v 136 (247)
.+++..+.+.|++.+-+. ..+. +.++++.+. .| ++..+++ ..+.++++.+.+.. ..+|++
T Consensus 25 ~~~~~~~~~~G~~~iev~~~~~~~~~~i~~ir~~---~~-----------~~~~ig~-~~v~~~~~~~~a~~--~Gad~i 87 (205)
T 1wa3_A 25 KEKALAVFEGGVHLIEITFTVPDADTVIKELSFL---KE-----------KGAIIGA-GTVTSVEQCRKAVE--SGAEFI 87 (205)
T ss_dssp HHHHHHHHHTTCCEEEEETTSTTHHHHHHHTHHH---HH-----------TTCEEEE-ESCCSHHHHHHHHH--HTCSEE
T ss_pred HHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHH---CC-----------CCcEEEe-cccCCHHHHHHHHH--cCCCEE
Confidence 567788888899987653 2111 112222111 11 1233332 13457777666554 368887
Q ss_pred EEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 025857 137 VIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (247)
Q Consensus 137 Vv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~ 203 (247)
+. ..+. .+++...+..+..++..+.+.+|++. +++.|+|.|-+.|..+..+..++++.
T Consensus 88 -v~-~~~~----~~~~~~~~~~g~~vi~g~~t~~e~~~---a~~~Gad~vk~~~~~~~g~~~~~~l~ 145 (205)
T 1wa3_A 88 -VS-PHLD----EEISQFCKEKGVFYMPGVMTPTELVK---AMKLGHTILKLFPGEVVGPQFVKAMK 145 (205)
T ss_dssp -EC-SSCC----HHHHHHHHHHTCEEECEECSHHHHHH---HHHTTCCEEEETTHHHHHHHHHHHHH
T ss_pred -Ec-CCCC----HHHHHHHHHcCCcEECCcCCHHHHHH---HHHcCCCEEEEcCccccCHHHHHHHH
Confidence 33 2332 46777666777888999999998775 47899999998875444444444443
No 35
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=82.55 E-value=1.8 Score=41.50 Aligned_cols=115 Identities=15% Similarity=0.089 Sum_probs=69.1
Q ss_pred EeCchhHHHHHHHhCCcEEEecCcch------HHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccc
Q 025857 56 WTESKQVMTAAVERGWNTFVFLSENQ------QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (247)
Q Consensus 56 W~~~KevvT~ALEsG~d~~v~~~~~~------e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~ 129 (247)
+.+..+.+.+.+|.|+|.+++...+. +.++++.+. .| +.+ .+...|.+.++.+.+...
T Consensus 254 ~~d~~era~aLveaGvd~I~Id~a~g~~~~v~~~i~~i~~~---~~------------~~~-vi~g~v~t~e~a~~~~~a 317 (511)
T 3usb_A 254 TADAMTRIDALVKASVDAIVLDTAHGHSQGVIDKVKEVRAK---YP------------SLN-IIAGNVATAEATKALIEA 317 (511)
T ss_dssp STTHHHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHH---CT------------TSE-EEEEEECSHHHHHHHHHH
T ss_pred ccchHHHHHHHHhhccceEEecccccchhhhhhHHHHHHHh---CC------------Cce-EEeeeeccHHHHHHHHHh
Confidence 45668889999999999988754321 233322111 01 111 122356677776665543
Q ss_pred cCCCCeEEEec-----------CCC---eeechhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 130 DGQAENIVIDL-----------PDW---QVIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 130 ~~~~~~vVv~~-----------~DW---tiIPlENlIA~~q~~~~~lia--~v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
.++.+++.. .+| ++-.+.++.+.++..+..||| .+.+..++..++ +.|+|||++-+-
T Consensus 318 --Gad~i~vg~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal---a~GA~~V~vGs~ 390 (511)
T 3usb_A 318 --GANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKAL---AAGAHVVMLGSM 390 (511)
T ss_dssp --TCSEEEECSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHH---HTTCSEEEESTT
T ss_pred --CCCEEEECCCCccccccccccCCCCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHH---HhCchhheecHH
Confidence 577877621 123 333344444444554567887 788999987764 579999999764
No 36
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=82.45 E-value=1 Score=39.99 Aligned_cols=116 Identities=12% Similarity=0.117 Sum_probs=57.0
Q ss_pred hhHHHHHHHhCCcEEEecCcchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEe-cChhhHhhhccccCCCCeEE-
Q 025857 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV-STPQELQQLQPADGQAENIV- 137 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I-~~~e~le~a~~~~~~~~~vV- 137 (247)
...+..+.|.|+|++++++-..+...++.+ .++..|.....++.- ++.+.++.+.......=|++
T Consensus 113 e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~-------------~~~~~gl~~i~liaP~t~~eri~~i~~~~~gfvY~vS 179 (267)
T 3vnd_A 113 DEFYTKAQAAGVDSVLIADVPVEESAPFSK-------------AAKAHGIAPIFIAPPNADADTLKMVSEQGEGYTYLLS 179 (267)
T ss_dssp HHHHHHHHHHTCCEEEETTSCGGGCHHHHH-------------HHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEEESC
T ss_pred HHHHHHHHHcCCCEEEeCCCCHhhHHHHHH-------------HHHHcCCeEEEEECCCCCHHHHHHHHHhCCCcEEEEe
Confidence 568999999999999987421111111110 011122222222222 23455555554433222321
Q ss_pred Ee-cCCCe--ee-chhhhhhcccCC-CceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 138 ID-LPDWQ--VI-PAENIVASFQGS-GKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 138 v~-~~DWt--iI-PlENlIA~~q~~-~~~lia--~v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
+. .++=+ +. +++.+|+.+.+. +..++. .++++++|+. .++.|+|||++-+.
T Consensus 180 ~~GvTG~~~~~~~~~~~~v~~vr~~~~~pv~vGfGI~~~e~~~~---~~~~gADgvVVGSa 237 (267)
T 3vnd_A 180 RAGVTGTESKAGEPIENILTQLAEFNAPPPLLGFGIAEPEQVRA---AIKAGAAGAISGSA 237 (267)
T ss_dssp CCCCC--------CHHHHHHHHHTTTCCCEEECSSCCSHHHHHH---HHHTTCSEEEECHH
T ss_pred cCCCCCCccCCcHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHH---HHHcCCCEEEECHH
Confidence 01 11111 22 367778876553 222332 2357777753 56789999999763
No 37
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=82.25 E-value=1.2 Score=38.75 Aligned_cols=115 Identities=8% Similarity=0.097 Sum_probs=56.8
Q ss_pred hhHHHHHHHhCCcEEEecCcchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEe-cChhhHhhhccccCCCCeEEE
Q 025857 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV-STPQELQQLQPADGQAENIVI 138 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I-~~~e~le~a~~~~~~~~~vVv 138 (247)
.+.+..+.+.|+|++++++...+...++-+ .++..|.....++.- ++.+.++.+.......-|++
T Consensus 112 ~~~~~~~~~aGadgii~~d~~~e~~~~~~~-------------~~~~~g~~~i~l~~p~t~~~~i~~i~~~~~g~v~~~- 177 (268)
T 1qop_A 112 DAFYARCEQVGVDSVLVADVPVEESAPFRQ-------------AALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLL- 177 (268)
T ss_dssp HHHHHHHHHHTCCEEEETTCCGGGCHHHHH-------------HHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEEEE-
T ss_pred HHHHHHHHHcCCCEEEEcCCCHHHHHHHHH-------------HHHHcCCcEEEEECCCCCHHHHHHHHhhCCCcEEEE-
Confidence 578889999999999987532221111100 011122222222222 33455555554443332222
Q ss_pred e---cCC---CeeechhhhhhcccCC-CceEEEE--cCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 139 D---LPD---WQVIPAENIVASFQGS-GKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 139 ~---~~D---WtiIPlENlIA~~q~~-~~~lia~--v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
. +++ -..-++..+|+.+.+. +..|+.. +++++.++. +++.|+|||++-+.
T Consensus 178 s~~G~tG~~~~~~~~~~~~i~~lr~~~~~pi~vggGI~t~e~~~~---~~~agAD~vVVGSa 236 (268)
T 1qop_A 178 SRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSA---AVRAGAAGAISGSA 236 (268)
T ss_dssp SSSSCCCSSSCC--CCHHHHHHHHHTTCCCEEEESSCCSHHHHHH---HHHTTCSEEEECHH
T ss_pred ecCCcCCCccCCCchHHHHHHHHHhccCCcEEEECCCCCHHHHHH---HHHcCCCEEEEChH
Confidence 2 111 1123455666665442 2233332 356776665 46789999998653
No 38
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=82.19 E-value=3.4 Score=36.58 Aligned_cols=42 Identities=14% Similarity=0.094 Sum_probs=36.2
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 025857 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (247)
Q Consensus 160 ~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~~ 204 (247)
.++...+.+++|++.++ +.|+|+|.+++-++++++++++.+.
T Consensus 183 ~~i~vev~tlee~~~A~---~aGaD~I~ld~~~~~~l~~~v~~l~ 224 (273)
T 2b7n_A 183 AKIEIECESFEEAKNAM---NAGADIVMCDNLSVLETKEIAAYRD 224 (273)
T ss_dssp CCEEEEESSHHHHHHHH---HHTCSEEEEETCCHHHHHHHHHHHH
T ss_pred ceEEEEcCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHhh
Confidence 47899999999988765 5799999999999999988877664
No 39
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=81.85 E-value=3.8 Score=39.05 Aligned_cols=115 Identities=14% Similarity=0.087 Sum_probs=69.8
Q ss_pred EeCchhHHHHHHHhCCcEEEecCcc------hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccc
Q 025857 56 WTESKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (247)
Q Consensus 56 W~~~KevvT~ALEsG~d~~v~~~~~------~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~ 129 (247)
+.+..+.+...+|.|+|.+.+...+ .+.++++.+- .| +..+. ...+.+.++.+.+...
T Consensus 229 ~~d~~~~a~~l~~aG~d~I~id~a~g~~~~~~~~i~~ir~~---~p------------~~~Vi-~g~v~t~e~a~~l~~a 292 (496)
T 4fxs_A 229 APGNEERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAA---YP------------HLEII-GGNVATAEGARALIEA 292 (496)
T ss_dssp SSCCHHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHH---CT------------TCCEE-EEEECSHHHHHHHHHH
T ss_pred ccchHHHHHHHHhccCceEEeccccccchHHHHHHHHHHHH---CC------------CceEE-EcccCcHHHHHHHHHh
Confidence 5567899999999999998875322 1222222111 01 11211 1456677776665533
Q ss_pred cCCCCeEEEecC--------------CCeeechhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 130 DGQAENIVIDLP--------------DWQVIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 130 ~~~~~~vVv~~~--------------DWtiIPlENlIA~~q~~~~~lia--~v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
.+|.+++... -++.-.+.++..+++..+..||+ .+.+.+|+..++ +.|+|||++-+-
T Consensus 293 --GaD~I~Vg~g~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kal---a~GAd~V~iGs~ 365 (496)
T 4fxs_A 293 --GVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAI---AAGASCVMVGSM 365 (496)
T ss_dssp --TCSEEEECSSCCTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHH---HTTCSEEEESTT
T ss_pred --CCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHH---HcCCCeEEecHH
Confidence 5788777411 12333344555544444567888 689999988775 469999999764
No 40
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=81.73 E-value=1.1 Score=39.02 Aligned_cols=113 Identities=12% Similarity=0.103 Sum_probs=56.2
Q ss_pred hhHHHHHHHhCCcEEEecCcchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEe-cChhhHhhhccccCCCCeEE-
Q 025857 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV-STPQELQQLQPADGQAENIV- 137 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I-~~~e~le~a~~~~~~~~~vV- 137 (247)
...+..|.+.|+|++++++-..+...++-+.. +..|..+..++.- ++.+.++.........-|.+
T Consensus 112 ~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~-------------~~~gl~~i~l~~p~t~~~rl~~ia~~a~gfiy~vs 178 (262)
T 2ekc_A 112 EKFCRLSREKGIDGFIVPDLPPEEAEELKAVM-------------KKYVLSFVPLGAPTSTRKRIKLICEAADEMTYFVS 178 (262)
T ss_dssp HHHHHHHHHTTCCEEECTTCCHHHHHHHHHHH-------------HHTTCEECCEECTTCCHHHHHHHHHHCSSCEEEES
T ss_pred HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH-------------HHcCCcEEEEeCCCCCHHHHHHHHHhCCCCEEEEe
Confidence 56778899999999998753223333221111 0111111111111 34455666655554433322
Q ss_pred ---EecCCCeee---chhhhhhcccCC-CceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 025857 138 ---IDLPDWQVI---PAENIVASFQGS-GKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 138 ---v~~~DWtiI---PlENlIA~~q~~-~~~lia--~v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
+.+.. +-. ++.++|+.+.+. +..|+. .+++++.++. +..|+|||++-+
T Consensus 179 ~~g~TG~~-~~~~~~~~~~~v~~vr~~~~~pv~vG~GI~t~e~~~~----~~~gADgvIVGS 235 (262)
T 2ekc_A 179 VTGTTGAR-EKLPYERIKKKVEEYRELCDKPVVVGFGVSKKEHARE----IGSFADGVVVGS 235 (262)
T ss_dssp SCC----------CHHHHHHHHHHHHHCCSCEEEESSCCSHHHHHH----HHTTSSEEEECH
T ss_pred cCCccCCC-CCcCcccHHHHHHHHHhhcCCCEEEeCCCCCHHHHHH----HHcCCCEEEECH
Confidence 11111 122 355777776542 233433 3467777765 567899999854
No 41
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=81.72 E-value=9.2 Score=31.70 Aligned_cols=112 Identities=15% Similarity=0.143 Sum_probs=64.4
Q ss_pred hhHHHHHHHhCCcEEEec-CcchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEec-ChhhHhhhccccCCCCeEE
Q 025857 60 KQVMTAAVERGWNTFVFL-SENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENIV 137 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~-~~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~-~~e~le~a~~~~~~~~~vV 137 (247)
.+++.++.+.|++++-+. +++.+.+++..++.++..+. .+ ++..+ +.+. ..++++.+.. ..++.+.
T Consensus 39 ~~~a~~~~~~G~~~i~~~~~~~i~~i~~~~~~p~i~~~~-~~---~~~~~------~~i~~~~~~i~~~~~--~Gad~V~ 106 (234)
T 1yxy_A 39 PLMAKAAQEAGAVGIRANSVRDIKEIQAITDLPIIGIIK-KD---YPPQE------PFITATMTEVDQLAA--LNIAVIA 106 (234)
T ss_dssp HHHHHHHHHHTCSEEEEESHHHHHHHHTTCCSCEEEECB-CC---CTTSC------CCBSCSHHHHHHHHT--TTCSEEE
T ss_pred HHHHHHHHHCCCcEeecCCHHHHHHHHHhCCCCEEeeEc-CC---CCccc------cccCChHHHHHHHHH--cCCCEEE
Confidence 688999999999998775 34455555555554432210 00 00000 1111 2344444432 3567777
Q ss_pred EecC---CCeeechhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeE
Q 025857 138 IDLP---DWQVIPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGI 186 (247)
Q Consensus 138 v~~~---DWtiIPlENlIA~~q~~--~~~lia~v~~~~EA~val~~LE~G~DGV 186 (247)
+... ++.--.+..+|..+... +..++..+.+.+||+. +++.|+|.|
T Consensus 107 l~~~~~~~~~~~~~~~~i~~i~~~~~~~~v~~~~~t~~ea~~---a~~~Gad~i 157 (234)
T 1yxy_A 107 MDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADISTFDEGLV---AHQAGIDFV 157 (234)
T ss_dssp EECCSSCCTTCCCHHHHHHHHHHHCTTCEEEEECSSHHHHHH---HHHTTCSEE
T ss_pred EcccccCCCCCccHHHHHHHHHHhCCCCeEEEeCCCHHHHHH---HHHcCCCEE
Confidence 7654 23112446666665543 5678888999999654 567899998
No 42
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=81.65 E-value=1.6 Score=39.84 Aligned_cols=42 Identities=12% Similarity=0.027 Sum_probs=34.8
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 025857 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (247)
Q Consensus 159 ~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~ 203 (247)
..+|..+|.|.+|++.+ ++.|+|+|+|+.-+++++++..+.+
T Consensus 209 ~~~ieVEvdtlde~~eA---l~aGaD~I~LDn~~~~~l~~av~~i 250 (298)
T 3gnn_A 209 EVPVQIEVETLDQLRTA---LAHGARSVLLDNFTLDMMRDAVRVT 250 (298)
T ss_dssp -CCCEEEESSHHHHHHH---HHTTCEEEEEESCCHHHHHHHHHHH
T ss_pred CCCEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHh
Confidence 45788999999997665 4579999999999999988877765
No 43
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=81.62 E-value=5.9 Score=37.23 Aligned_cols=110 Identities=15% Similarity=0.120 Sum_probs=64.5
Q ss_pred hhHHHHHHHhCCcEEEecC--cc----hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCC
Q 025857 60 KQVMTAAVERGWNTFVFLS--EN----QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQA 133 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~--~~----~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~ 133 (247)
.+.+.+++|.|+|.|++.. .+ .+.++++.+-. +.++. ...+.+.++.+.+... .+
T Consensus 146 ~e~~~~lveaGvdvIvldta~G~~~~~~e~I~~ik~~~----------------~i~Vi-~g~V~t~e~A~~a~~a--GA 206 (400)
T 3ffs_A 146 IERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSKM----------------NIDVI-VGNVVTEEATKELIEN--GA 206 (400)
T ss_dssp CHHHHHHHHHTCSEEEECCSCCSBHHHHHHHHHHHTTC----------------CCEEE-EEEECSHHHHHHHHHT--TC
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCcccHHHHHHHHHhcC----------------CCeEE-EeecCCHHHHHHHHHc--CC
Confidence 7899999999999988632 11 23333322110 11111 1256777776665533 57
Q ss_pred CeEEEec--------C---CC---eeechhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 134 ENIVIDL--------P---DW---QVIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 134 ~~vVv~~--------~---DW---tiIPlENlIA~~q~~~~~lia--~v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
|.|++-. + +| ++--+.++...++..+..||| .+.+.+++..++ +.|+|||.+-+.
T Consensus 207 D~I~vG~g~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kal---alGAd~V~vGt~ 277 (400)
T 3ffs_A 207 DGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKAL---AVGASSVMIGSI 277 (400)
T ss_dssp SEEEECC---------CCSCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHH---TTTCSEEEECGG
T ss_pred CEEEEeCCCCcCcccccccccchhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHH---HcCCCEEEEChH
Confidence 8888721 1 12 222234444444445677888 578888877655 569999998654
No 44
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=81.31 E-value=1.6 Score=38.26 Aligned_cols=77 Identities=12% Similarity=0.022 Sum_probs=46.3
Q ss_pred cChhhHhhhccccC-CC--CeEEEecCCCeeechhhhhhcccC-C-CceEE--EEcCCHHHHHHHHHHhhcccCeEEEec
Q 025857 118 STPQELQQLQPADG-QA--ENIVIDLPDWQVIPAENIVASFQG-S-GKTVF--AISKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 118 ~~~e~le~a~~~~~-~~--~~vVv~~~DWtiIPlENlIA~~q~-~-~~~li--a~v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
.+++.+...+..+. .. .++-++..+ .-+...+|+++.+ . +..++ ..+++.++|+.+ ++ |+|||++-+
T Consensus 146 ~~~e~~~~~a~~g~~~l~~~~Vyl~~~G--~~~~~~~i~~i~~~~~~~Pv~vGgGI~s~e~a~~~---~~-gAd~VIVGS 219 (234)
T 2f6u_A 146 IDKELAASYALVGEKLFNLPIIYIEYSG--TYGNPELVAEVKKVLDKARLFYGGGIDSREKAREM---LR-YADTIIVGN 219 (234)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEEECTT--SCCCHHHHHHHHHHCSSSEEEEESCCCSHHHHHHH---HH-HSSEEEECH
T ss_pred CCHHHHHHHHHhhhhhcCCCEEEEeCCC--CcchHHHHHHHHHhCCCCCEEEEecCCCHHHHHHH---Hh-CCCEEEECh
Confidence 36665666665554 12 566666543 3455666666533 2 22333 447899999884 56 999999988
Q ss_pred CCHHHHHHHHHhh
Q 025857 191 EDVKAVLALKEYF 203 (247)
Q Consensus 191 ~d~~ev~~l~~~~ 203 (247)
- -++...+.+
T Consensus 220 a---~v~~~~~~~ 229 (234)
T 2f6u_A 220 V---IYEKGIDAF 229 (234)
T ss_dssp H---HHHHCHHHH
T ss_pred H---HHhCHHHHH
Confidence 6 444444444
No 45
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=80.67 E-value=5.1 Score=35.01 Aligned_cols=117 Identities=15% Similarity=0.106 Sum_probs=70.9
Q ss_pred chhHHHHHHHhCCcEEEecC---cchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCe
Q 025857 59 SKQVMTAAVERGWNTFVFLS---ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~~---~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~ 135 (247)
-.++..++++.|+..+=++- +-.+.++++.+-- | +..+|+ ..|.+.++.+.+... .+++
T Consensus 48 a~~~a~al~~gGi~~iEvt~~t~~a~e~I~~l~~~~---~------------~~~iGa-GTVlt~~~a~~Ai~A--GA~f 109 (232)
T 4e38_A 48 IIPLGKVLAENGLPAAEITFRSDAAVEAIRLLRQAQ---P------------EMLIGA-GTILNGEQALAAKEA--GATF 109 (232)
T ss_dssp HHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHC---T------------TCEEEE-ECCCSHHHHHHHHHH--TCSE
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhC---C------------CCEEeE-CCcCCHHHHHHHHHc--CCCE
Confidence 46778888888888776641 1123333322100 1 122222 235678887777654 5678
Q ss_pred EEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH-HHHHHHHh
Q 025857 136 IVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK-AVLALKEY 202 (247)
Q Consensus 136 vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~-ev~~l~~~ 202 (247)
++.-..| +.++...+..+..++..+.|++|+..| ++.|+|-|=+-|-..- -..-||++
T Consensus 110 IvsP~~~------~~vi~~~~~~gi~~ipGv~TptEi~~A---~~~Gad~vK~FPa~~~gG~~~lkal 168 (232)
T 4e38_A 110 VVSPGFN------PNTVRACQEIGIDIVPGVNNPSTVEAA---LEMGLTTLKFFPAEASGGISMVKSL 168 (232)
T ss_dssp EECSSCC------HHHHHHHHHHTCEEECEECSHHHHHHH---HHTTCCEEEECSTTTTTHHHHHHHH
T ss_pred EEeCCCC------HHHHHHHHHcCCCEEcCCCCHHHHHHH---HHcCCCEEEECcCccccCHHHHHHH
Confidence 6644333 334444455567888999999998876 7899999999886432 33344443
No 46
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=80.40 E-value=8.5 Score=27.84 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=42.1
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~----~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l 199 (247)
..+.+|++..-.. ..--.++..+.. .+..++...... +......+++.|+++++.+|-+++++.+.
T Consensus 59 ~~dlii~D~~l~~-~~g~~~~~~l~~~~~~~~~~ii~ls~~~-~~~~~~~~~~~g~~~~l~kP~~~~~L~~~ 128 (143)
T 2qvg_A 59 HPKLILLDINIPK-MNGIEFLKELRDDSSFTDIEVFVLTAAY-TSKDKLAFESLNIRGHLIKPLDYGEAIKL 128 (143)
T ss_dssp CCSEEEEETTCTT-SCHHHHHHHHTTSGGGTTCEEEEEESCC-CHHHHHHHTTTTCCEEEESSCCHHHHHHH
T ss_pred CCCEEEEecCCCC-CCHHHHHHHHHcCccccCCcEEEEeCCC-CHHHHHHHHhcCCCeEEECCCCHHHHHHH
Confidence 4677777754322 222234444443 345666665543 34566788999999999999999977654
No 47
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=79.99 E-value=5.3 Score=34.76 Aligned_cols=103 Identities=10% Similarity=0.072 Sum_probs=60.1
Q ss_pred hhHHHHHHHhCCcEEEecCcc------------h---HHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHh
Q 025857 60 KQVMTAAVERGWNTFVFLSEN------------Q---QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQ 124 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~~~------------~---e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le 124 (247)
.+.+..||+.|++.|.++..+ . ++++++..+.. ..| +.+-|.|.-++-
T Consensus 46 ~~~~~~al~~Gv~~vqlR~K~~~~~~~~~~l~~~~~~~~a~~l~~l~~-------------~~~----~~liInd~~~lA 108 (243)
T 3o63_A 46 AQFAEAALAGGVDIIQLRDKGSPGELRFGPLQARDELAACEILADAAH-------------RYG----ALFAVNDRADIA 108 (243)
T ss_dssp HHHHHHHHHTTCSEEEECCTTCHHHHHHCSCCHHHHHHHHHHHHHHHH-------------HTT----CEEEEESCHHHH
T ss_pred HHHHHHHHHCCCCEEEEccCCCCccccccCCCHHHHHHHHHHHHHHHH-------------hhC----CEEEEeCHHHHH
Confidence 678999999999999886422 1 12222222211 112 234444555543
Q ss_pred hhccccCCCCeEEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 025857 125 QLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 125 ~a~~~~~~~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
... .++-|-+...|- |.+.+-.. .+.+..|-..+.|.+|++.+ .+.|+|-|.+.|
T Consensus 109 ~~~----gAdGVHLg~~dl---~~~~~r~~-~~~~~~iG~S~ht~~Ea~~A---~~~GaDyI~vgp 163 (243)
T 3o63_A 109 RAA----GADVLHLGQRDL---PVNVARQI-LAPDTLIGRSTHDPDQVAAA---AAGDADYFCVGP 163 (243)
T ss_dssp HHH----TCSEEEECTTSS---CHHHHHHH-SCTTCEEEEEECSHHHHHHH---HHSSCSEEEECC
T ss_pred HHh----CCCEEEecCCcC---CHHHHHHh-hCCCCEEEEeCCCHHHHHHH---hhCCCCEEEEcC
Confidence 322 456666655554 44444332 34455667778999998765 458999999954
No 48
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=79.85 E-value=7.8 Score=27.57 Aligned_cols=66 Identities=9% Similarity=0.185 Sum_probs=39.8
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~----~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l 199 (247)
..+.++++..-.. ..--.++..++. .+..++......+ ......+++.|++|++.+|-+++++.+.
T Consensus 55 ~~dlvi~d~~~~~-~~g~~~~~~l~~~~~~~~~pii~ls~~~~-~~~~~~~~~~g~~~~l~kP~~~~~l~~~ 124 (140)
T 1k68_A 55 RPDLILLXLNLPK-KDGREVLAEIKSDPTLKRIPVVVLSTSIN-EDDIFHSYDLHVNCYITKSANLSQLFQI 124 (140)
T ss_dssp CCSEEEECSSCSS-SCHHHHHHHHHHSTTGGGSCEEEEESCCC-HHHHHHHHHTTCSEEEECCSSHHHHHHH
T ss_pred CCcEEEEecCCCc-ccHHHHHHHHHcCcccccccEEEEecCCc-HHHHHHHHHhchhheecCCCCHHHHHHH
Confidence 4677777654222 222234444333 3345666554433 3345677899999999999999877654
No 49
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=78.70 E-value=17 Score=29.89 Aligned_cols=98 Identities=6% Similarity=-0.023 Sum_probs=55.7
Q ss_pred HHHHHHhCCcEEEecCcc------hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeE
Q 025857 63 MTAAVERGWNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (247)
Q Consensus 63 vT~ALEsG~d~~v~~~~~------~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~v 136 (247)
+..+++.|++.|.++..+ .+.++++.+... + ....++. ++++.+.. ..++.+
T Consensus 35 ~~~~~~~G~~~v~lr~~~~~~~~~~~~~~~l~~~~~--~--------------~~~l~v~----~~~~~a~~--~gad~v 92 (221)
T 1yad_A 35 IIITIQNEVDFIHIRERSKSAADILKLLDLIFEGGI--D--------------KRKLVMN----GRVDIALF--STIHRV 92 (221)
T ss_dssp HHHHHGGGCSEEEECCTTSCHHHHHHHHHHHHHTTC--C--------------GGGEEEE----SCHHHHHT--TTCCEE
T ss_pred HHHHHHCCCCEEEEccCCCCHHHHHHHHHHHHHhcC--c--------------CCeEEEe----ChHHHHHH--cCCCEE
Confidence 788999999987765311 334444433211 1 0012221 22333332 256776
Q ss_pred EEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 025857 137 VIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 137 Vv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
-+...+ .|.+.+-..+ . +..+...+.|.+|++.+ .+.|+|.|++.+
T Consensus 93 ~l~~~~---~~~~~~~~~~-~-~~~ig~sv~t~~~~~~a---~~~gaD~i~~~~ 138 (221)
T 1yad_A 93 QLPSGS---FSPKQIRARF-P-HLHIGRSVHSLEEAVQA---EKEDADYVLFGH 138 (221)
T ss_dssp EECTTS---CCHHHHHHHC-T-TCEEEEEECSHHHHHHH---HHTTCSEEEEEC
T ss_pred EeCCCc---cCHHHHHHHC-C-CCEEEEEcCCHHHHHHH---HhCCCCEEEECC
Confidence 666554 3555554433 2 45667778899987654 578999999965
No 50
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=78.47 E-value=16 Score=29.90 Aligned_cols=114 Identities=20% Similarity=0.169 Sum_probs=65.6
Q ss_pred hhHHHHHHHhCCcEEEecC-cchHHHhhccceeEEeeeeec--CCceecCCCCeEEEEEEecChhhHhhhccccCCCCeE
Q 025857 60 KQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIK--EGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~-~~~e~~~~lg~i~~i~pl~i~--~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~v 136 (247)
.+++..+.+.|++.+.+.. +..+.+++..++.++..+..+ ++.++ + -.+.++++.+.. ..++.+
T Consensus 26 ~~~a~~~~~~Ga~~i~~~~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~----------i-~~~~~~i~~~~~--~Gad~v 92 (223)
T 1y0e_A 26 SKMALAAYEGGAVGIRANTKEDILAIKETVDLPVIGIVKRDYDHSDVF----------I-TATSKEVDELIE--SQCEVI 92 (223)
T ss_dssp HHHHHHHHHHTCSEEEEESHHHHHHHHHHCCSCEEEECBCCCTTCCCC----------B-SCSHHHHHHHHH--HTCSEE
T ss_pred HHHHHHHHHCCCeeeccCCHHHHHHHHHhcCCCEEeeeccCCCccccc----------c-CCcHHHHHHHHh--CCCCEE
Confidence 6788888999999987643 223334443444443210000 11111 0 013345554433 256888
Q ss_pred EEecCCCee--echhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 025857 137 VIDLPDWQV--IPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (247)
Q Consensus 137 Vv~~~DWti--IPlENlIA~~q~~--~~~lia~v~~~~EA~val~~LE~G~DGVll~ 189 (247)
++....=.- -+++.++..+... +..++..+.+.+|++. +.+.|+|.|.+.
T Consensus 93 ~l~~~~~~~p~~~~~~~i~~~~~~~~~~~v~~~~~t~~e~~~---~~~~G~d~i~~~ 146 (223)
T 1y0e_A 93 ALDATLQQRPKETLDELVSYIRTHAPNVEIMADIATVEEAKN---AARLGFDYIGTT 146 (223)
T ss_dssp EEECSCSCCSSSCHHHHHHHHHHHCTTSEEEEECSSHHHHHH---HHHTTCSEEECT
T ss_pred EEeeecccCcccCHHHHHHHHHHhCCCceEEecCCCHHHHHH---HHHcCCCEEEeC
Confidence 877654211 3456676665543 5567788899999875 578999999874
No 51
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=78.43 E-value=3.5 Score=37.06 Aligned_cols=42 Identities=14% Similarity=0.011 Sum_probs=36.3
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 025857 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (247)
Q Consensus 160 ~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~~ 204 (247)
.+++..+.+++|++.++ +.|+|+|.|++-++++++++++.+.
T Consensus 198 ~~i~vev~tlee~~~A~---~aGaD~I~ld~~~~~~l~~~v~~l~ 239 (299)
T 2jbm_A 198 LKVEVECSSLQEAVQAA---EAGADLVLLDNFKPEELHPTATVLK 239 (299)
T ss_dssp SCEEEEESSHHHHHHHH---HTTCSEEEEESCCHHHHHHHHHHHH
T ss_pred CeEEEecCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHhh
Confidence 57899999999987665 6799999999999999988877664
No 52
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=77.87 E-value=13 Score=27.52 Aligned_cols=65 Identities=11% Similarity=0.139 Sum_probs=39.7
Q ss_pred CCeEEEecCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcc-cCeEEEecCCHHHHHHH
Q 025857 133 AENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQG-LGGIVLKVEDVKAVLAL 199 (247)
Q Consensus 133 ~~~vVv~~~DWtiIPlENlIA~~q--~~~~~lia~v~~~~EA~val~~LE~G-~DGVll~~~d~~ev~~l 199 (247)
.+.++++..-...=.+ .++..+. ..+..++.... ..+......+++.| +++++.+|-+++++.+.
T Consensus 49 ~dlvi~D~~l~~~~g~-~~~~~l~~~~~~~~ii~~s~-~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~ 116 (151)
T 3kcn_A 49 FSVIMVDMRMPGMEGT-EVIQKARLISPNSVYLMLTG-NQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAA 116 (151)
T ss_dssp CSEEEEESCCSSSCHH-HHHHHHHHHCSSCEEEEEEC-GGGHHHHHHHHHHTCCSEEEESSCCHHHHHHH
T ss_pred CCEEEEeCCCCCCcHH-HHHHHHHhcCCCcEEEEEEC-CCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHH
Confidence 4777777543222122 2222222 23445555444 44556677889999 99999999999877654
No 53
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=77.76 E-value=2.2 Score=38.03 Aligned_cols=116 Identities=9% Similarity=0.103 Sum_probs=57.0
Q ss_pred hhHHHHHHHhCCcEEEecCcchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEe-cChhhHhhhccccCCCCeEEE
Q 025857 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV-STPQELQQLQPADGQAENIVI 138 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I-~~~e~le~a~~~~~~~~~vVv 138 (247)
...+..|.|.|+|++++++-..|...++.+. .+..|.....++.- ++++.++.+.......=|.|-
T Consensus 115 ~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~-------------~~~~gl~~I~lvap~t~~eri~~i~~~~~gfiY~vs 181 (271)
T 3nav_A 115 DDFYQRCQKAGVDSVLIADVPTNESQPFVAA-------------AEKFGIQPIFIAPPTASDETLRAVAQLGKGYTYLLS 181 (271)
T ss_dssp HHHHHHHHHHTCCEEEETTSCGGGCHHHHHH-------------HHHTTCEEEEEECTTCCHHHHHHHHHHCCSCEEECC
T ss_pred HHHHHHHHHCCCCEEEECCCCHHHHHHHHHH-------------HHHcCCeEEEEECCCCCHHHHHHHHHHCCCeEEEEe
Confidence 5689999999999999874111111111110 11122222222222 234555555554433323211
Q ss_pred ----ecCCCee-echhhhhhcccCC-CceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 139 ----DLPDWQV-IPAENIVASFQGS-GKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 139 ----~~~DWti-IPlENlIA~~q~~-~~~lia--~v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
.+..-.+ -+++.+++.+.+. +..++. .++++++|+. .++.|+|||++-+.
T Consensus 182 ~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~~~~---~~~~gADgvIVGSA 239 (271)
T 3nav_A 182 RAGVTGAETKANMPVHALLERLQQFDAPPALLGFGISEPAQVKQ---AIEAGAAGAISGSA 239 (271)
T ss_dssp CC--------CCHHHHHHHHHHHHTTCCCEEECSSCCSHHHHHH---HHHTTCSEEEESHH
T ss_pred ccCCCCcccCCchhHHHHHHHHHHhcCCCEEEECCCCCHHHHHH---HHHcCCCEEEECHH
Confidence 1221111 2366677765432 223332 3568888763 56789999998663
No 54
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=77.48 E-value=15 Score=30.33 Aligned_cols=127 Identities=12% Similarity=0.084 Sum_probs=61.7
Q ss_pred EEEEe--CchhHHHHHHHhCCcEEEecCc---ch----HHHhhccc-eeE-EeeeeecCCceecCCCCeEEEEEEecCh-
Q 025857 53 VWIWT--ESKQVMTAAVERGWNTFVFLSE---NQ----QLAIDWST-IAL-LDPLFIKEGEVYDSGDRRVGSIIEVSTP- 120 (247)
Q Consensus 53 vWiW~--~~KevvT~ALEsG~d~~v~~~~---~~----e~~~~lg~-i~~-i~pl~i~~g~~~~~~g~~va~~~~I~~~- 120 (247)
+++=- .+.+.+..+++.|+|.+++..+ +. +..+.+|. +.+ +++. ++. | ...+.+.+-
T Consensus 77 v~v~ggi~~~~~~~~~l~~Gad~V~lg~~~l~~p~~~~~~~~~~g~~~~~~ld~~-~~~-------~---~~~v~~~g~~ 145 (244)
T 2y88_A 77 VELSGGIRDDESLAAALATGCARVNVGTAALENPQWCARVIGEHGDQVAVGLDVQ-IID-------G---EHRLRGRGWE 145 (244)
T ss_dssp EEEESSCCSHHHHHHHHHTTCSEEEECHHHHHCHHHHHHHHHHHGGGEEEEEEEE-EET-------T---EEEEEEGGGT
T ss_pred EEEECCCCCHHHHHHHHHcCCCEEEECchHhhChHHHHHHHHHcCCCEEEEEecc-ccC-------C---CCEEEECCcc
Confidence 55522 4567799999999999998542 22 23334442 111 2220 000 0 012222211
Q ss_pred ----hhHhhhccc-cCCCCeEEEecCCC----eeechhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEe
Q 025857 121 ----QELQQLQPA-DGQAENIVIDLPDW----QVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLK 189 (247)
Q Consensus 121 ----e~le~a~~~-~~~~~~vVv~~~DW----tiIPlENlIA~~q~~~~~lia~--v~~~~EA~val~~LE~G~DGVll~ 189 (247)
..++.+... ...++.+++...+- +-+-+|.+-.-.+..+..|++. +++.++++.+++.--.|+|||++-
T Consensus 146 ~~~~~~~e~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG 225 (244)
T 2y88_A 146 TDGGDLWDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVG 225 (244)
T ss_dssp EEEEEHHHHHHHHHHTTCCCEEEEETTTTTTTSCCCHHHHHHHHTTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEEC
T ss_pred CCCCCHHHHHHHHHhCCCCEEEEEecCCccccCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEc
Confidence 112222111 12477777765432 2233443322223334556663 567788776543311199999986
Q ss_pred c
Q 025857 190 V 190 (247)
Q Consensus 190 ~ 190 (247)
.
T Consensus 226 ~ 226 (244)
T 2y88_A 226 K 226 (244)
T ss_dssp H
T ss_pred H
Confidence 4
No 55
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=77.32 E-value=18 Score=31.34 Aligned_cols=90 Identities=18% Similarity=0.244 Sum_probs=51.4
Q ss_pred CCCeEEEEEEecChhhHhhhccccCCCCeEEEec---CC----CeeechhhhhhcccC--CCceEEEEcC-CHHHHHHHH
Q 025857 107 GDRRVGSIIEVSTPQELQQLQPADGQAENIVIDL---PD----WQVIPAENIVASFQG--SGKTVFAISK-TPSEAQIFL 176 (247)
Q Consensus 107 ~g~~va~~~~I~~~e~le~a~~~~~~~~~vVv~~---~D----WtiIPlENlIA~~q~--~~~~lia~v~-~~~EA~val 176 (247)
.++.+++ .+.+.++++.+.. ..+||+.+.. ++ -....+|.+-.-.+. .+..++|.-. +.+.+ -
T Consensus 134 ~~~~iG~--S~ht~~Ea~~A~~--~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI~~~ni---~ 206 (243)
T 3o63_A 134 PDTLIGR--STHDPDQVAAAAA--GDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGINAQRL---P 206 (243)
T ss_dssp TTCEEEE--EECSHHHHHHHHH--SSCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSCCTTTH---H
T ss_pred CCCEEEE--eCCCHHHHHHHhh--CCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCCCHHHH---H
Confidence 3455554 5688887766654 3689988853 11 113456554432222 2456777643 55544 4
Q ss_pred HHhhcccCeEEE-----ecCCHHH-HHHHHHhh
Q 025857 177 EALEQGLGGIVL-----KVEDVKA-VLALKEYF 203 (247)
Q Consensus 177 ~~LE~G~DGVll-----~~~d~~e-v~~l~~~~ 203 (247)
++++.|+|||.+ ..+||.+ +++|++.+
T Consensus 207 ~~~~aGa~gvav~sai~~a~dp~~a~~~l~~~~ 239 (243)
T 3o63_A 207 AVLDAGARRIVVVRAITSADDPRAAAEQLRSAL 239 (243)
T ss_dssp HHHHTTCCCEEESHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHH
Confidence 567899999997 4567654 44555443
No 56
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=76.68 E-value=9.6 Score=35.22 Aligned_cols=112 Identities=14% Similarity=0.117 Sum_probs=64.7
Q ss_pred CchhHHHHHHHhCCcEEEecC--cc----hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccC
Q 025857 58 ESKQVMTAAVERGWNTFVFLS--EN----QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG 131 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~--~~----~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~ 131 (247)
+..+.+..++|.|+|.|++.. .+ .+.++++.+- .| +.++ ....+.+.++.+.+...
T Consensus 108 ~~~~~~~~lieaGvd~I~idta~G~~~~~~~~I~~ik~~---~p------------~v~V-i~G~v~t~e~A~~a~~a-- 169 (366)
T 4fo4_A 108 GNEERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAA---YP------------HLEI-IGGNVATAEGARALIEA-- 169 (366)
T ss_dssp TCHHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHH---CT------------TCEE-EEEEECSHHHHHHHHHH--
T ss_pred hHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHh---cC------------CCce-EeeeeCCHHHHHHHHHc--
Confidence 457889999999999887632 11 1222222110 01 1111 12356788876666543
Q ss_pred CCCeEEEe---c--------CCCeeec----hhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 132 QAENIVID---L--------PDWQVIP----AENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 132 ~~~~vVv~---~--------~DWtiIP----lENlIA~~q~~~~~lia--~v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
.+|++++- + .+|- +| +.++.+.++..+..||+ .+.+..++..+ |..|+|||++-+.
T Consensus 170 GAD~I~vG~gpGs~~~tr~~~g~g-~p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~ka---la~GAd~V~vGs~ 242 (366)
T 4fo4_A 170 GVSAVKVGIGPGSICTTRIVTGVG-VPQITAIADAAGVANEYGIPVIADGGIRFSGDISKA---IAAGASCVMVGSM 242 (366)
T ss_dssp TCSEEEECSSCSTTBCHHHHHCCC-CCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHH---HHTTCSEEEESTT
T ss_pred CCCEEEEecCCCCCCCcccccCcc-cchHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHH---HHcCCCEEEEChH
Confidence 58898882 0 0222 23 23333333344567888 77888886654 5669999998765
No 57
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 3srh_A 3srd_A 1zjh_A 4b2d_A* 4b2d_D* 3u2z_A* 3g2g_A 1t5a_A* 3bjt_A 4g1n_A* 3bjf_A* 3srf_C 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* ...
Probab=76.65 E-value=2.5 Score=41.71 Aligned_cols=134 Identities=16% Similarity=0.191 Sum_probs=85.3
Q ss_pred CchhHHHHHHHhCCcEEEecC-cchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeE
Q 025857 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~-~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~v 136 (247)
.|++-+.-|+|.|+|.+.++- ..++.++++.++ +...|..+.++..|++++.++.+.+.....|-+
T Consensus 243 kD~~dl~f~~~~~vD~ia~SfVr~a~Dv~~~r~~-------------L~~~g~~i~IIAKIE~~eav~nldeIl~~sDgI 309 (550)
T 3gr4_A 243 KDIQDLKFGVEQDVDMVFASFIRKASDVHEVRKV-------------LGEKGKNIKIISKIENHEGVRRFDEILEASDGI 309 (550)
T ss_dssp HHHHHHHHHHHTTCSEEEETTCCSHHHHHHHHHH-------------HTTTTTTSEEEEEECSHHHHHTHHHHHHHSSEE
T ss_pred HHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHH-------------HHhcCCCceEEEEeCCHHHHHHHHHHHHhCCEE
Confidence 468889999999999887652 224444433221 233455677899999999988886666667877
Q ss_pred EEecCCCe-eechhhh-------hhcccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC-----
Q 025857 137 VIDLPDWQ-VIPAENI-------VASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED----- 192 (247)
Q Consensus 137 Vv~~~DWt-iIPlENl-------IA~~q~~~~~lia~-----------v~~~~EA~val~~LE~G~DGVll~~~d----- 192 (247)
+|-..|-- =||+|.+ |.+....+.-+|.. ..+-.|+--...+.--|+|+|+|..+.
T Consensus 310 mVaRGDLgvei~~e~vp~~Qk~iI~~c~~agkpVi~ATQMLeSMi~~p~PTRAEvsDVanAvldG~DavMLSgETA~G~y 389 (550)
T 3gr4_A 310 MVARGDLGIEIPAEKVFLAQKMMIGRCNRAGKPVICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKGDY 389 (550)
T ss_dssp EEEHHHHHHHSCGGGHHHHHHHHHHHHHHHTCCEEEESSTTGGGGTCSSCCHHHHHHHHHHHHHTCSEEEESHHHHTCSC
T ss_pred EEccchhcccCCHHHHHHHHHHHHHHHHHhCCCEEEEehhhHHhhcCCCccHHHHHHHHHHHHcCCcEEEEecCccCCCC
Confidence 77543322 1355553 33332223233421 236778888899999999999996653
Q ss_pred -HHHHHHHHHhhc
Q 025857 193 -VKAVLALKEYFD 204 (247)
Q Consensus 193 -~~ev~~l~~~~~ 204 (247)
.+.|+-+.+++.
T Consensus 390 PveaV~~M~~I~~ 402 (550)
T 3gr4_A 390 PLEAVRMQHLIAR 402 (550)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 455655665554
No 58
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus}
Probab=76.59 E-value=2.5 Score=41.74 Aligned_cols=135 Identities=14% Similarity=0.199 Sum_probs=84.4
Q ss_pred CchhHHHHHHHhCCcEEEecC-cchHHHhhccceeEEeeeeecCCceecCCC-CeEEEEEEecChhhHhhhccccCCCCe
Q 025857 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGD-RRVGSIIEVSTPQELQQLQPADGQAEN 135 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~-~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g-~~va~~~~I~~~e~le~a~~~~~~~~~ 135 (247)
.|++.+.-||+.|+|.+.++- .+++.++++.++ +...| ..+.++.+|++++.++.+.+.....|-
T Consensus 174 kD~~di~~~l~~g~d~v~~sfV~~a~dv~~~~~~-------------l~~~~~~~~~iiakIE~~eav~nldeIl~~~Dg 240 (587)
T 2e28_A 174 KDRADILFGIRQGIDFIAASFVRRASDVLEIREL-------------LEAHDALHIQIIAKIENEEGVANIDEILEAADG 240 (587)
T ss_dssp HHHHHHHHHHHHTCSEEEESSCCSHHHHHHHHHH-------------HHHTTCTTSEEEEEECSHHHHHTHHHHHHHSSE
T ss_pred ccHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHHcCCCCceEEEEECCHHHHHhHHHHHHhCCE
Confidence 368889999999999998762 234444443332 12223 256789999999998887665556687
Q ss_pred EEEecCC------Ceeech--hhhhhcccCCCceEEEEc-----------CCHHHHHHHHHHhhcccCeEEEecCC----
Q 025857 136 IVIDLPD------WQVIPA--ENIVASFQGSGKTVFAIS-----------KTPSEAQIFLEALEQGLGGIVLKVED---- 192 (247)
Q Consensus 136 vVv~~~D------WtiIPl--ENlIA~~q~~~~~lia~v-----------~~~~EA~val~~LE~G~DGVll~~~d---- 192 (247)
++|-..| ..-.|. +.+|++....+.-++..- .+-.|+--...+.--|+|+|+|+.+.
T Consensus 241 ImVargDLgvei~~~~v~~~qk~ii~~~~~~gkpvi~ATQmLeSMi~~p~PTRAE~sDvanav~dG~DavMLSgETA~G~ 320 (587)
T 2e28_A 241 LMVARGDLGVEIPAEEVPLIQKLLIKKSNMLGKPVITATQMLDSMQRNPRPTRAEASDVANAIFDGTDAVMLSGETAAGQ 320 (587)
T ss_dssp EEEEHHHHHHHSCGGGHHHHHHHHHHHHHHHTCCEEEESSSSGGGGTCSSCCHHHHHHHHHHHHHTCSEEEESHHHHTCS
T ss_pred EEEcCchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEechhhHhhccCCCccHHHHhccchhhhhCcceeeecccccCCC
Confidence 7765433 222232 445555444333333321 24567777888888999999996554
Q ss_pred --HHHHHHHHHhhcc
Q 025857 193 --VKAVLALKEYFDG 205 (247)
Q Consensus 193 --~~ev~~l~~~~~~ 205 (247)
.+.|+-+.+++.+
T Consensus 321 yPveaV~~m~~I~~~ 335 (587)
T 2e28_A 321 YPVEAVKTMHQIALR 335 (587)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 3455555555543
No 59
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=76.57 E-value=7.9 Score=33.70 Aligned_cols=118 Identities=18% Similarity=0.082 Sum_probs=74.4
Q ss_pred CchhHHHHHHHhCCcEEEecC--cc-hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCC
Q 025857 58 ESKQVMTAAVERGWNTFVFLS--EN-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAE 134 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~--~~-~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~ 134 (247)
+-.++..+.++.|++.+=++- ++ .+.++++.+- -| +..+|+ ..|.+.++.+.+... .++
T Consensus 26 ~a~~~a~al~~gGi~~iEvt~~t~~a~~~I~~l~~~---~p------------~~~IGA-GTVlt~~~a~~ai~A--GA~ 87 (217)
T 3lab_A 26 HAIPMAKALVAGGVHLLEVTLRTEAGLAAISAIKKA---VP------------EAIVGA-GTVCTADDFQKAIDA--GAQ 87 (217)
T ss_dssp GHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHH---CT------------TSEEEE-ECCCSHHHHHHHHHH--TCS
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHH---CC------------CCeEee-ccccCHHHHHHHHHc--CCC
Confidence 357788999999999877741 11 2333332210 01 122333 356688888877654 567
Q ss_pred eEEEecCCCeeechhhhhhcccCCCc------eEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH----HHHHHHHHh
Q 025857 135 NIVIDLPDWQVIPAENIVASFQGSGK------TVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV----KAVLALKEY 202 (247)
Q Consensus 135 ~vVv~~~DWtiIPlENlIA~~q~~~~------~lia~v~~~~EA~val~~LE~G~DGVll~~~d~----~ev~~l~~~ 202 (247)
++|.-..+.+ ++...+..+. -++..+.+++|+..+ +|.|+|.|=+-|... +-+++++..
T Consensus 88 fivsP~~~~e------vi~~~~~~~v~~~~~~~~~PG~~TptE~~~A---~~~Gad~vK~FPa~~~gG~~~lkal~~p 156 (217)
T 3lab_A 88 FIVSPGLTPE------LIEKAKQVKLDGQWQGVFLPGVATASEVMIA---AQAGITQLKCFPASAIGGAKLLKAWSGP 156 (217)
T ss_dssp EEEESSCCHH------HHHHHHHHHHHCSCCCEEEEEECSHHHHHHH---HHTTCCEEEETTTTTTTHHHHHHHHHTT
T ss_pred EEEeCCCcHH------HHHHHHHcCCCccCCCeEeCCCCCHHHHHHH---HHcCCCEEEECccccccCHHHHHHHHhh
Confidence 8776554443 4444444455 789999999998775 899999999999763 444444443
No 60
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=76.15 E-value=14 Score=30.86 Aligned_cols=105 Identities=15% Similarity=0.094 Sum_probs=62.6
Q ss_pred chhHHHHHHHhCCcEEEecCc---chHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCe
Q 025857 59 SKQVMTAAVERGWNTFVFLSE---NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~~~---~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~ 135 (247)
-.+++.++++.|++.|=++-. ..+..+++.+ | +..+++-. +.+.++.+.+... .+++
T Consensus 27 ~~~~~~~l~~gGv~~iel~~k~~~~~~~i~~~~~-----~------------~~~~gag~-vl~~d~~~~A~~~--GAd~ 86 (207)
T 2yw3_A 27 LLGLARVLEEEGVGALEITLRTEKGLEALKALRK-----S------------GLLLGAGT-VRSPKEAEAALEA--GAAF 86 (207)
T ss_dssp HHHHHHHHHHTTCCEEEEECSSTHHHHHHHHHTT-----S------------SCEEEEES-CCSHHHHHHHHHH--TCSE
T ss_pred HHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHhC-----C------------CCEEEeCe-EeeHHHHHHHHHc--CCCE
Confidence 367899999999998766521 1333333333 1 12223322 4466777777544 5778
Q ss_pred EEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 025857 136 IVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (247)
Q Consensus 136 vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d 192 (247)
++.-..| .|+-..... .+..++-.+.|++|++.+ ++.|+|.|-+-|..
T Consensus 87 v~~~~~d---~~v~~~~~~---~g~~~i~G~~t~~e~~~A---~~~Gad~v~~fpa~ 134 (207)
T 2yw3_A 87 LVSPGLL---EEVAALAQA---RGVPYLPGVLTPTEVERA---LALGLSALKFFPAE 134 (207)
T ss_dssp EEESSCC---HHHHHHHHH---HTCCEEEEECSHHHHHHH---HHTTCCEEEETTTT
T ss_pred EEcCCCC---HHHHHHHHH---hCCCEEecCCCHHHHHHH---HHCCCCEEEEecCc
Confidence 6644333 333333332 233456668999998665 56799999998854
No 61
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=75.96 E-value=7.8 Score=33.23 Aligned_cols=105 Identities=16% Similarity=0.045 Sum_probs=60.3
Q ss_pred chhHHHHHHHhCCcEEEecCcc---hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCe
Q 025857 59 SKQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~~~~---~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~ 135 (247)
-.+++.++++.|++.|=++-.+ .+..+++.+- -| +..+++-. +.+.++.+.+... .+++
T Consensus 40 ~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~---~~------------~~~igagt-vl~~d~~~~A~~a--GAd~ 101 (225)
T 1mxs_A 40 ILPLADALAAGGIRTLEVTLRSQHGLKAIQVLREQ---RP------------ELCVGAGT-VLDRSMFAAVEAA--GAQF 101 (225)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSTHHHHHHHHHHHH---CT------------TSEEEEEC-CCSHHHHHHHHHH--TCSS
T ss_pred HHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHh---Cc------------ccEEeeCe-EeeHHHHHHHHHC--CCCE
Confidence 3578999999999987775311 2222222110 01 12223322 4567777776544 4778
Q ss_pred EEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 025857 136 IVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 136 vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
++.-..| .|+-..- +..+..++..+.|++|+.. +++.|+|-|-+-|
T Consensus 102 v~~p~~d---~~v~~~~---~~~g~~~i~G~~t~~e~~~---A~~~Gad~vk~FP 147 (225)
T 1mxs_A 102 VVTPGIT---EDILEAG---VDSEIPLLPGISTPSEIMM---GYALGYRRFKLFP 147 (225)
T ss_dssp EECSSCC---HHHHHHH---HHCSSCEECEECSHHHHHH---HHTTTCCEEEETT
T ss_pred EEeCCCC---HHHHHHH---HHhCCCEEEeeCCHHHHHH---HHHCCCCEEEEcc
Confidence 7644333 2222222 2233455656999999855 5689999998877
No 62
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=75.88 E-value=14 Score=26.80 Aligned_cols=68 Identities=9% Similarity=0.111 Sum_probs=41.4
Q ss_pred CCCCeEEEecCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 025857 131 GQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (247)
Q Consensus 131 ~~~~~vVv~~~DWtiIPlENlIA~~q--~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~ 200 (247)
...+.++++..-.. ..--.++..+. ..+..++..... .+......+++.|+++++.+|-+++++.+.-
T Consensus 48 ~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~ii~ls~~-~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l 117 (143)
T 3jte_A 48 NSIDVVITDMKMPK-LSGMDILREIKKITPHMAVIILTGH-GDLDNAILAMKEGAFEYLRKPVTAQDLSIAI 117 (143)
T ss_dssp TTCCEEEEESCCSS-SCHHHHHHHHHHHCTTCEEEEEECT-TCHHHHHHHHHTTCSEEEESSCCHHHHHHHH
T ss_pred CCCCEEEEeCCCCC-CcHHHHHHHHHHhCCCCeEEEEECC-CCHHHHHHHHHhCcceeEeCCCCHHHHHHHH
Confidence 45677777754322 11222333332 234566655543 3345566788999999999999998776543
No 63
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=75.81 E-value=9.7 Score=26.54 Aligned_cols=66 Identities=11% Similarity=0.033 Sum_probs=39.7
Q ss_pred CCCeEEEecCCCeeechhhhhhccc----CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQ----GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q----~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l 199 (247)
..+.++++..-..-..--.++..+. ..+..++.. .. .+......+++.|+++++.+|-++.++.+.
T Consensus 49 ~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~~-~~-~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~ 118 (127)
T 2gkg_A 49 RPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVII-GN-PDGFAQHRKLKAHADEYVAKPVDADQLVER 118 (127)
T ss_dssp CCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEEE-EC-GGGHHHHHHSTTCCSEEEESSCCHHHHHHH
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEEE-ec-CCchhHHHHHHhCcchheeCCCCHHHHHHH
Confidence 3566666543220112223444433 235566666 33 334556688999999999999999876544
No 64
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3srk_A* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A*
Probab=75.71 E-value=1.8 Score=42.14 Aligned_cols=134 Identities=18% Similarity=0.205 Sum_probs=84.7
Q ss_pred CchhHHHHHHHhCCcEEEecC-cchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeE
Q 025857 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~-~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~v 136 (247)
.|++-+..|+|.|+|.+.++- ..++.++++.++ +...|..+.++..|++++.++.+.+.....|-+
T Consensus 193 kD~~dl~~~~~~~vD~i~~sfVr~a~dv~~~r~~-------------l~~~~~~i~IiaKIE~~eav~nldeIl~~sDgI 259 (499)
T 3hqn_D 193 KDRVDLQFGVEQGVDMIFASFIRSAEQVGDVRKA-------------LGPKGRDIMIICKIENHQGVQNIDSIIEESDGI 259 (499)
T ss_dssp HHHHHHHHHHHTTCSEEEETTCCSHHHHHHHHHH-------------HCGGGTTSEEEEEECSHHHHHTHHHHHHHSSEE
T ss_pred HHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHH-------------HHhcCCCCeEEEEECCHHHHHhHHHHHHhCCcE
Confidence 468888999999999888652 224444433221 122344667899999999988886666567887
Q ss_pred EEecCCCe-eechhhh-------hhcccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC-----
Q 025857 137 VIDLPDWQ-VIPAENI-------VASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED----- 192 (247)
Q Consensus 137 Vv~~~DWt-iIPlENl-------IA~~q~~~~~lia~-----------v~~~~EA~val~~LE~G~DGVll~~~d----- 192 (247)
+|-..|-- =||+|.+ |.+....+.-+|.. ..+-.|+--...+.--|+|+|+|..+.
T Consensus 260 mVaRGDLgvEi~~e~vp~~Qk~iI~~c~~agkpVi~ATQmLeSMi~~p~PTRAEvsDVanaV~dG~DavMLSgETA~G~y 339 (499)
T 3hqn_D 260 MVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKY 339 (499)
T ss_dssp EEEHHHHHHHSCHHHHHHHHHHHHHHHHHHTCCEEEESSSSGGGGTSSSCCHHHHHHHHHHHHHTCSEEEESHHHHTCSC
T ss_pred EEccccccCcCCHHHHHHHHHHHHHHHHHcCCCeEEeehhHHHhccCCCccHHHHHHHHHHHHcCCcEEEEeccccCCCC
Confidence 77644432 2466654 33322222223331 236778888889999999999996543
Q ss_pred -HHHHHHHHHhhc
Q 025857 193 -VKAVLALKEYFD 204 (247)
Q Consensus 193 -~~ev~~l~~~~~ 204 (247)
.+.|+-+.+++.
T Consensus 340 PveaV~~m~~I~~ 352 (499)
T 3hqn_D 340 PNEVVQYMARICL 352 (499)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 455555555553
No 65
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=75.54 E-value=20 Score=25.75 Aligned_cols=67 Identities=7% Similarity=0.112 Sum_probs=41.1
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~----~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~ 200 (247)
..+.++++..-.. ..--.++..+.. .+..++......+ ......+++.|++|++.+|-+++++.+.-
T Consensus 62 ~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~~~ii~~t~~~~-~~~~~~~~~~g~~~~l~kP~~~~~l~~~i 132 (149)
T 1k66_A 62 RPAVILLDLNLPG-TDGREVLQEIKQDEVLKKIPVVIMTTSSN-PKDIEICYSYSISSYIVKPLEIDRLTETV 132 (149)
T ss_dssp CCSEEEECSCCSS-SCHHHHHHHHTTSTTGGGSCEEEEESCCC-HHHHHHHHHTTCSEEEECCSSHHHHHHHH
T ss_pred CCcEEEEECCCCC-CCHHHHHHHHHhCcccCCCeEEEEeCCCC-HHHHHHHHHCCCCEEEeCCCCHHHHHHHH
Confidence 4566676654332 222344454443 2345666554432 34566788999999999999998776543
No 66
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=75.41 E-value=7.9 Score=35.52 Aligned_cols=109 Identities=16% Similarity=0.146 Sum_probs=61.0
Q ss_pred hhHHHHHHHhCCcEEEecC--cch----HHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCC
Q 025857 60 KQVMTAAVERGWNTFVFLS--ENQ----QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQA 133 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~--~~~----e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~ 133 (247)
.+.+..++|.|+|.|++.. .+. +.++++.+-. +.++. ...+.+.++.+.+.. ..+
T Consensus 107 ~e~a~~l~eaGad~I~ld~a~G~~~~~~~~i~~i~~~~----------------~~~Vi-vg~v~t~e~A~~l~~--aGa 167 (361)
T 3khj_A 107 IERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSKM----------------NIDVI-VGNVVTEEATKELIE--NGA 167 (361)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCSBHHHHHHHHHHHHHC----------------CCEEE-EEEECSHHHHHHHHH--TTC
T ss_pred HHHHHHHHHcCcCeEEEeCCCCCcHHHHHHHHHHHHhc----------------CCcEE-EccCCCHHHHHHHHH--cCc
Confidence 7889999999999887632 121 2222211100 11111 125667777666553 357
Q ss_pred CeEEEec-----------CCCeeec----hhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 134 ENIVIDL-----------PDWQVIP----AENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 134 ~~vVv~~-----------~DWtiIP----lENlIA~~q~~~~~lia--~v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
|++++-. .+|. .| +..+...++..+..|++ .+.+.+++..++ ..|+|||++-+-
T Consensus 168 D~I~VG~~~Gs~~~tr~~~g~g-~p~~~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kal---a~GAd~V~vGs~ 238 (361)
T 3khj_A 168 DGIKVGIGPGSICTTRIVAGVG-VPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKAL---AVGASSVMIGSI 238 (361)
T ss_dssp SEEEECSSCCTTCCHHHHTCBC-CCHHHHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHH---HHTCSEEEESTT
T ss_pred CEEEEecCCCcCCCcccccCCC-CCcHHHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHH---HcCCCEEEEChh
Confidence 8888721 1221 23 23332222233456788 578898877665 459999998754
No 67
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=75.25 E-value=11 Score=27.00 Aligned_cols=66 Identities=14% Similarity=0.256 Sum_probs=38.8
Q ss_pred CCeEEEecCCCeeechhhhhhcccC---CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 025857 133 AENIVIDLPDWQVIPAENIVASFQG---SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (247)
Q Consensus 133 ~~~vVv~~~DWtiIPlENlIA~~q~---~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~ 200 (247)
.+.+|++..-... .--.++..+.. .+..++...... +......+++.|+++++.+|-+++++.+.-
T Consensus 53 ~dlvi~D~~l~~~-~g~~~~~~l~~~~~~~~~ii~~s~~~-~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i 121 (136)
T 3hdv_A 53 IGLMITDLRMQPE-SGLDLIRTIRASERAALSIIVVSGDT-DVEEAVDVMHLGVVDFLLKPVDLGKLLELV 121 (136)
T ss_dssp EEEEEECSCCSSS-CHHHHHHHHHTSTTTTCEEEEEESSC-CHHHHHHHHHTTCSEEEESSCCHHHHHHHH
T ss_pred CcEEEEeccCCCC-CHHHHHHHHHhcCCCCCCEEEEeCCC-ChHHHHHHHhCCcceEEeCCCCHHHHHHHH
Confidence 4556665432221 22233433332 345566655443 334567788999999999999998765443
No 68
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=73.57 E-value=4.3 Score=36.48 Aligned_cols=41 Identities=12% Similarity=-0.071 Sum_probs=35.7
Q ss_pred eEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 025857 161 TVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (247)
Q Consensus 161 ~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~~ 204 (247)
+|..++.|.+||+.+ ++.|+|.|+|+.-+++++++..+.+.
T Consensus 196 ~I~Vev~t~eea~ea---l~aGaD~I~LDn~~~~~~~~~v~~l~ 236 (284)
T 1qpo_A 196 PCEVEVDSLEQLDAV---LPEKPELILLDNFAVWQTQTAVQRRD 236 (284)
T ss_dssp CEEEEESSHHHHHHH---GGGCCSEEEEETCCHHHHHHHHHHHH
T ss_pred CEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHhh
Confidence 899999999988765 55799999999999999988877764
No 69
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=73.26 E-value=7.4 Score=28.16 Aligned_cols=43 Identities=9% Similarity=0.090 Sum_probs=34.6
Q ss_pred CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 025857 158 SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (247)
Q Consensus 158 ~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~ 200 (247)
.+..++......+.......+++.|+++++.+|-+++++.+.-
T Consensus 79 ~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i 121 (140)
T 3grc_A 79 RDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSL 121 (140)
T ss_dssp TTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHH
T ss_pred CCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHH
Confidence 4567888888777777666899999999999999998776543
No 70
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=73.04 E-value=10 Score=33.68 Aligned_cols=107 Identities=10% Similarity=0.071 Sum_probs=59.6
Q ss_pred hhHHHHHHHhCCcEEEecCcc-hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeEEE
Q 025857 60 KQVMTAAVERGWNTFVFLSEN-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~~~-~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vVv 138 (247)
.+.+..|++.|+|.|.+..++ .+.++.+. ..|.+ +++.+.+.++.+.+.. ..+|++++
T Consensus 78 ~~~~~~a~~~g~d~V~~~~g~p~~~i~~l~-----------------~~g~~--v~~~v~~~~~a~~~~~--~GaD~i~v 136 (332)
T 2z6i_A 78 EDIVDLVIEEGVKVVTTGAGNPSKYMERFH-----------------EAGII--VIPVVPSVALAKRMEK--IGADAVIA 136 (332)
T ss_dssp HHHHHHHHHTTCSEEEECSSCGGGTHHHHH-----------------HTTCE--EEEEESSHHHHHHHHH--TTCSCEEE
T ss_pred HHHHHHHHHCCCCEEEECCCChHHHHHHHH-----------------HcCCe--EEEEeCCHHHHHHHHH--cCCCEEEE
Confidence 678999999999998875322 12222111 11222 3355677776555543 35899998
Q ss_pred ecC--CCe--eechhhhhhccc-CCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEec
Q 025857 139 DLP--DWQ--VIPAENIVASFQ-GSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 139 ~~~--DWt--iIPlENlIA~~q-~~~~~lia~--v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
.+. +.. -.|.-.++.++. ..+..+++. ++|.+++..++. .|+|||.+-+
T Consensus 137 ~g~~~GG~~g~~~~~~ll~~i~~~~~iPViaaGGI~~~~~~~~al~---~GAdgV~vGs 192 (332)
T 2z6i_A 137 EGMEAGGHIGKLTTMTLVRQVATAISIPVIAAGGIADGEGAAAGFM---LGAEAVQVGT 192 (332)
T ss_dssp ECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHH---TTCSEEEECH
T ss_pred ECCCCCCCCCCccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH---cCCCEEEecH
Confidence 753 111 122223444332 123345543 457777765554 7999999854
No 71
>3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis}
Probab=72.67 E-value=4.3 Score=35.94 Aligned_cols=51 Identities=12% Similarity=0.169 Sum_probs=38.6
Q ss_pred hhhhhcccCCCceEEEE-cCCHH-------HHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 149 ENIVASFQGSGKTVFAI-SKTPS-------EAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 149 ENlIA~~q~~~~~lia~-v~~~~-------EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
..+|++++..+-++++- +++.+ +++.+-..++.|||||. ||+|..+.++.+
T Consensus 218 ~~~V~~ah~~G~~V~vWTv~t~d~~~~~~~~~~~~~~L~~~GVDgIi--TD~P~~l~~~L~ 276 (292)
T 3mz2_A 218 REVIDMLHERGVMCMISTAPSDDKLSTPESRAEAYRMIIRQGVDIIE--SDRPIEVAEAIS 276 (292)
T ss_dssp HHHHHHHHHTTBCEEEECTTTGGGSSSHHHHHHHHHHHHHTTCCEEE--ESCHHHHHHHHG
T ss_pred HHHHHHHHHCCCEEEEEeCCCcchhhhccccHHHHHHHHHcCCCEEE--eCCHHHHHHHHH
Confidence 56888888888888875 56654 25677788999999987 889996655443
No 72
>4drs_A Pyruvate kinase; glycolysis, allosteric EN transferase; 2.50A {Cryptosporidium parvum} PDB: 3ma8_A*
Probab=72.53 E-value=1.9 Score=42.15 Aligned_cols=139 Identities=14% Similarity=0.169 Sum_probs=85.9
Q ss_pred hHHHHHHHhCCcEEEecC-cchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeEEEe
Q 025857 61 QVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (247)
Q Consensus 61 evvT~ALEsG~d~~v~~~-~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vVv~ 139 (247)
+++.-|+|-|+|.|-..= .+++.++++.++-- +.|....+.+.++.++..|+.++.++.+.+.....|-++|.
T Consensus 220 D~l~fa~~~~vD~ialSFVr~~~Dv~~~r~~l~------~~g~~~~~~~~~i~IiaKIE~~~av~NldeIi~~sDgIMVA 293 (526)
T 4drs_A 220 DIVDFALKYNLDFIALSFVQNGADVQLCRQIIS------ENTQYSNGIPSSIKIISKIENLEGVINFDSICSESDGIMVA 293 (526)
T ss_dssp HHHHTTTTTTCSEEEETTCCSHHHHHHHHHHHH------TCCTTTTTCCCCCEEEEEECSHHHHHTHHHHHHHSSEEEEE
T ss_pred HHHHHHHHhccCeeeecccCchhhHHHHHHHHH------hhCcccccccccceeeeehhccHHHHHHHHHHhhccEEEEE
Confidence 467889999999766420 12333333322110 11111112234677899999999999887777788998887
Q ss_pred cCCCee-echhh-------hhhcccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC------HH
Q 025857 140 LPDWQV-IPAEN-------IVASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED------VK 194 (247)
Q Consensus 140 ~~DWti-IPlEN-------lIA~~q~~~~~lia~-----------v~~~~EA~val~~LE~G~DGVll~~~d------~~ 194 (247)
-.|--+ ||+|. ||......+.-+|.. ..+-.|+--...+..-|+|+|+|..+. .+
T Consensus 294 RGDLgvEip~e~vp~~QK~II~~c~~~gKPVI~ATQmLeSMi~np~PTRAEvsDVAnAV~DGaDavMLSgETA~G~yPve 373 (526)
T 4drs_A 294 RGDLGMEIPPEKIFVAQKCMISKCNVAGKPVVTATQMLESMIKSNRPTRAEMTDVANAVLDGSDCVMLSGETANGAFPFD 373 (526)
T ss_dssp CTTHHHHSCGGGHHHHHHHHHHHHHHHTCCEEEESCTTGGGGSSSSCCHHHHHHHHHHHHHTCSEEEESHHHHSCSCHHH
T ss_pred CCcccccCCHHHHHHHHHHHHHHHHHcCCeEEEhhhhhHHHhhCCCCCCchHHHHHHHHHhCCceEEEcchhhcccCHHH
Confidence 766433 55554 444443333334432 346778888899999999999998543 34
Q ss_pred HHHHHHHhhcc
Q 025857 195 AVLALKEYFDG 205 (247)
Q Consensus 195 ev~~l~~~~~~ 205 (247)
.|+-+.+++.+
T Consensus 374 aV~~m~~I~~~ 384 (526)
T 4drs_A 374 AVNVMSRVCAQ 384 (526)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555543
No 73
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=72.39 E-value=13 Score=30.27 Aligned_cols=113 Identities=15% Similarity=0.111 Sum_probs=58.2
Q ss_pred HHHHHHHhCCcEEEecCcch--HHHhh-ccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeEEE
Q 025857 62 VMTAAVERGWNTFVFLSENQ--QLAID-WSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (247)
Q Consensus 62 vvT~ALEsG~d~~v~~~~~~--e~~~~-lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vVv 138 (247)
.+..|++.|+|.+.++..+. ..+++ ++. .. ..+.+.+.+++..+.. ..++++++
T Consensus 86 ~~~~a~~~gad~v~l~~~~~~~~~~~~~~g~-------------------~~--~~~s~~t~~e~~~a~~--~g~d~v~~ 142 (227)
T 2tps_A 86 DVELALNLKADGIHIGQEDANAKEVRAAIGD-------------------MI--LGVSAHTMSEVKQAEE--DGADYVGL 142 (227)
T ss_dssp CHHHHHHHTCSEEEECTTSSCHHHHHHHHTT-------------------SE--EEEEECSHHHHHHHHH--HTCSEEEE
T ss_pred HHHHHHHcCCCEEEECCCccCHHHHHHhcCC-------------------cE--EEEecCCHHHHHHHHh--CCCCEEEE
Confidence 45678888888888764321 11111 221 11 1223456666544432 35788876
Q ss_pred e--c-----------CCCeeechhhhhhcccCCCceEEEEcC-CHHHHHHHHHHhhcccCeEEEec-----CCH-HHHHH
Q 025857 139 D--L-----------PDWQVIPAENIVASFQGSGKTVFAISK-TPSEAQIFLEALEQGLGGIVLKV-----EDV-KAVLA 198 (247)
Q Consensus 139 ~--~-----------~DWtiIPlENlIA~~q~~~~~lia~v~-~~~EA~val~~LE~G~DGVll~~-----~d~-~ev~~ 198 (247)
. + .+|..+ ..+...+ . +..+++.=. +++.++. +++.|+|||.+-+ .|+ ..+++
T Consensus 143 ~~v~~t~~~~~~~~~~~~~~l--~~~~~~~-~-~~pvia~GGI~~~nv~~---~~~~Ga~gv~vgs~i~~~~d~~~~~~~ 215 (227)
T 2tps_A 143 GPIYPTETKKDTRAVQGVSLI--EAVRRQG-I-SIPIVGIGGITIDNAAP---VIQAGADGVSMISAISQAEDPESAARK 215 (227)
T ss_dssp CCSSCCCSSSSCCCCCTTHHH--HHHHHTT-C-CCCEEEESSCCTTTSHH---HHHTTCSEEEESHHHHTSSCHHHHHHH
T ss_pred CCCcCCCCCCCCCCccCHHHH--HHHHHhC-C-CCCEEEEcCCCHHHHHH---HHHcCCCEEEEhHHhhcCCCHHHHHHH
Confidence 1 1 133332 2222222 1 134554321 3555544 4568999998765 577 66666
Q ss_pred HHHhhc
Q 025857 199 LKEYFD 204 (247)
Q Consensus 199 l~~~~~ 204 (247)
+++.+.
T Consensus 216 ~~~~~~ 221 (227)
T 2tps_A 216 FREEIQ 221 (227)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666553
No 74
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=72.30 E-value=16 Score=26.48 Aligned_cols=43 Identities=16% Similarity=0.102 Sum_probs=29.6
Q ss_pred CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 158 SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 158 ~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
.+..++......+ ......+++.|+++++.+|-++.++.+.-+
T Consensus 80 ~~~~ii~ls~~~~-~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~ 122 (140)
T 3lua_A 80 ANTPVIIATKSDN-PGYRHAALKFKVSDYILKPYPTKRLENSVR 122 (140)
T ss_dssp TTCCEEEEESCCC-HHHHHHHHHSCCSEEEESSCCTTHHHHHHH
T ss_pred CCCCEEEEeCCCC-HHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Confidence 3455666554332 244567789999999999999887765443
No 75
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=72.12 E-value=17 Score=26.47 Aligned_cols=67 Identities=16% Similarity=0.143 Sum_probs=42.4
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~----~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~ 200 (247)
..+.+|++..-.. ..--.++..++. .+..++...... +......+++.|+++++.+|-+++++.+.-
T Consensus 52 ~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~~~pii~ls~~~-~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i 122 (147)
T 2zay_A 52 HPHLIITEANMPK-ISGMDLFNSLKKNPQTASIPVIALSGRA-TAKEEAQLLDMGFIDFIAKPVNAIRLSARI 122 (147)
T ss_dssp CCSEEEEESCCSS-SCHHHHHHHHHTSTTTTTSCEEEEESSC-CHHHHHHHHHHTCSEEEESSCCHHHHHHHH
T ss_pred CCCEEEEcCCCCC-CCHHHHHHHHHcCcccCCCCEEEEeCCC-CHHHHHHHHhCCCCEEEeCCCCHHHHHHHH
Confidence 4677777754322 222334444443 345666665543 344566788999999999999998776543
No 76
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=72.06 E-value=23 Score=26.00 Aligned_cols=68 Identities=13% Similarity=0.182 Sum_probs=40.1
Q ss_pred CCCeEEEecCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q--~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
..+.+|++..-.. ..--.++..+. ..+..++...... +......+++.|+++++.+|-+++++.+.-+
T Consensus 66 ~~dlii~D~~l~~-~~g~~~~~~l~~~~~~~~ii~ls~~~-~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~ 135 (150)
T 4e7p_A 66 SVDIAILDVEMPV-KTGLEVLEWIRSEKLETKVVVVTTFK-RAGYFERAVKAGVDAYVLKERSIADLMQTLH 135 (150)
T ss_dssp CCSEEEECSSCSS-SCHHHHHHHHHHTTCSCEEEEEESCC-CHHHHHHHHHTTCSEEEETTSCHHHHHHHHH
T ss_pred CCCEEEEeCCCCC-CcHHHHHHHHHHhCCCCeEEEEeCCC-CHHHHHHHHHCCCcEEEecCCCHHHHHHHHH
Confidence 3566666644222 12222333332 2345666665543 3345667889999999999999987765433
No 77
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=71.80 E-value=12 Score=26.21 Aligned_cols=66 Identities=12% Similarity=0.123 Sum_probs=39.8
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~-~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l 199 (247)
..+.++++..-... .--.++..++. .+..++......+ ......+++.|+++.+.+|-+++++.+.
T Consensus 46 ~~dlvi~d~~l~~~-~g~~~~~~l~~~~~~~ii~~s~~~~-~~~~~~~~~~ga~~~l~Kp~~~~~l~~~ 112 (122)
T 1zgz_A 46 SVDLILLDINLPDE-NGLMLTRALRERSTVGIILVTGRSD-RIDRIVGLEMGADDYVTKPLELRELVVR 112 (122)
T ss_dssp CCSEEEEESCCSSS-CHHHHHHHHHTTCCCEEEEEESSCC-HHHHHHHHHHTCSEEEESSCCHHHHHHH
T ss_pred CCCEEEEeCCCCCC-ChHHHHHHHHhcCCCCEEEEECCCC-hhhHHHHHHhCHHHHccCCCCHHHHHHH
Confidence 46777776543221 22234444433 3455665554333 3345678899999999999998876543
No 78
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=71.54 E-value=13 Score=26.50 Aligned_cols=66 Identities=11% Similarity=0.057 Sum_probs=38.7
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~----~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~ 200 (247)
..+.++++..-.. ..--.++..++. .+..++......++.. ..+++.|+++++.+|-+++++.+.-
T Consensus 47 ~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~--~~~~~~g~~~~l~KP~~~~~l~~~i 116 (133)
T 3nhm_A 47 PPDVLISDVNMDG-MDGYALCGHFRSEPTLKHIPVIFVSGYAPRTE--GPADQPVPDAYLVKPVKPPVLIAQL 116 (133)
T ss_dssp CCSEEEECSSCSS-SCHHHHHHHHHHSTTTTTCCEEEEESCCC-------TTSCCCSEEEESSCCHHHHHHHH
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhCCccCCCCEEEEeCCCcHhH--HHHhhcCCceEEeccCCHHHHHHHH
Confidence 4667776654222 122234444333 2456777766554443 6899999999999999998776543
No 79
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=71.01 E-value=20 Score=28.71 Aligned_cols=103 Identities=13% Similarity=0.081 Sum_probs=56.3
Q ss_pred chhHHHHHHHhCCcEEEecC--cc----hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCC
Q 025857 59 SKQVMTAAVERGWNTFVFLS--EN----QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 132 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~~--~~----~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~ 132 (247)
-.+.+..+++.|++.+-+.. .. .+.++++.++.. .-+ +.+++. ++.+.+... .
T Consensus 28 ~~~~~~~~~~~G~~~i~l~~~~~~~~~~~~~~~~l~~~~~-------------~~~--v~v~v~----~~~~~a~~~--g 86 (215)
T 1xi3_A 28 EVESVREALEGGATAIQMRIKNAPTREMYEIGKTLRQLTR-------------EYD--ALFFVD----DRVDVALAV--D 86 (215)
T ss_dssp HHHHHHHHHHTTCSEEEECCCSCCHHHHHHHHHHHHHHHH-------------HTT--CEEEEE----SCHHHHHHH--T
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHH-------------HcC--CeEEEc----ChHHHHHHc--C
Confidence 36889999999999987631 11 223333322111 011 122221 333333322 5
Q ss_pred CCeEEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 025857 133 AENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 133 ~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
++.+++...|. |.+.+ .++. .+..+...+.+.+|++. +.+.|+|.|++.+
T Consensus 87 ad~v~l~~~~~---~~~~~-~~~~-~~~~~~v~~~t~~e~~~---~~~~g~d~i~~~~ 136 (215)
T 1xi3_A 87 ADGVQLGPEDM---PIEVA-KEIA-PNLIIGASVYSLEEALE---AEKKGADYLGAGS 136 (215)
T ss_dssp CSEEEECTTSC---CHHHH-HHHC-TTSEEEEEESSHHHHHH---HHHHTCSEEEEEC
T ss_pred CCEEEECCccC---CHHHH-HHhC-CCCEEEEecCCHHHHHH---HHhcCCCEEEEcC
Confidence 67877765554 34433 3333 33445555789998764 4678999999854
No 80
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=70.86 E-value=17 Score=27.57 Aligned_cols=104 Identities=12% Similarity=0.086 Sum_probs=61.7
Q ss_pred hhHHHHHHHhCCcEEEecCcchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeEEEe
Q 025857 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vVv~ 139 (247)
..+.....+.|.+-+++.. +.+.++++.+. |.. .++...++++.++.+. ...++.+|+-
T Consensus 20 ~~la~~L~~~g~~v~vid~-~~~~~~~~~~~-----------------g~~-~i~gd~~~~~~l~~a~--i~~ad~vi~~ 78 (140)
T 3fwz_A 20 SLLGEKLLASDIPLVVIET-SRTRVDELRER-----------------GVR-AVLGNAANEEIMQLAH--LECAKWLILT 78 (140)
T ss_dssp HHHHHHHHHTTCCEEEEES-CHHHHHHHHHT-----------------TCE-EEESCTTSHHHHHHTT--GGGCSEEEEC
T ss_pred HHHHHHHHHCCCCEEEEEC-CHHHHHHHHHc-----------------CCC-EEECCCCCHHHHHhcC--cccCCEEEEE
Confidence 5666666678998777763 35555443321 111 1223334555555442 2357787766
Q ss_pred cCCCeeechhhh----hhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 140 LPDWQVIPAENI----VASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 140 ~~DWtiIPlENl----IA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
..+- .+|+ .|+....+.++++.+++.+.++.+. +.|+|-|+....
T Consensus 79 ~~~~----~~n~~~~~~a~~~~~~~~iiar~~~~~~~~~l~---~~G~d~vi~p~~ 127 (140)
T 3fwz_A 79 IPNG----YEAGEIVASARAKNPDIEIIARAHYDDEVAYIT---ERGANQVVMGER 127 (140)
T ss_dssp CSCH----HHHHHHHHHHHHHCSSSEEEEEESSHHHHHHHH---HTTCSEEEEHHH
T ss_pred CCCh----HHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHH---HCCCCEEECchH
Confidence 6653 3453 1222244679999999999988664 589998885444
No 81
>2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); thermophilic, PEP-utilising enzyme, transferase; 1.68A {Thermoanaerobacter tengcongensis} PDB: 2bg5_A 2xz7_A*
Probab=70.57 E-value=12 Score=33.90 Aligned_cols=97 Identities=15% Similarity=0.245 Sum_probs=64.7
Q ss_pred CCCCeEEEEEEecChhhHhhhccccCC------CCeEEEecCCCeeechhh-----hhhcccC-CCceEEEEcCCH----
Q 025857 106 SGDRRVGSIIEVSTPQELQQLQPADGQ------AENIVIDLPDWQVIPAEN-----IVASFQG-SGKTVFAISKTP---- 169 (247)
Q Consensus 106 ~~g~~va~~~~I~~~e~le~a~~~~~~------~~~vVv~~~DWtiIPlEN-----lIA~~q~-~~~~lia~v~~~---- 169 (247)
.+|.++..+..+.++++.+.+...+.. .++++++..+ .|-|. +...++. .+..++..+.|.
T Consensus 15 ~dg~~~~l~~n~~~p~~~~~a~~~GadgVGL~RtE~l~ld~e~---~p~~~~q~~~~~~~~~~~~~~~v~VR~~d~g~dk 91 (324)
T 2xz9_A 15 PDGKKVMLAANIGTPKDVASALANGAEGVGLFRTEFLYMDRNS---LPSEEEQFEAYKEVVEKMGGRPVTIRTLDIGGDK 91 (324)
T ss_dssp TTSCEEEEEEEESSGGGHHHHHHTTCSSEEEECCGGGTSSSSS---CCCHHHHHHHHHHHHHHTTTSCEEEECCCCBGGG
T ss_pred cCCCEEEEEEECCCHHHHHHHHhCCCCeEeehhhhhhhccCCC---CCCHHHHHHHHHHHHHHhCCCceEEEeCCCCcch
Confidence 457889999999999999888755421 2344555544 56553 2222221 233467776653
Q ss_pred -------------------------------HHHHHHHHHhhcccCeEEEe-cCCHHHHHHHHHhhcc
Q 025857 170 -------------------------------SEAQIFLEALEQGLGGIVLK-VEDVKAVLALKEYFDG 205 (247)
Q Consensus 170 -------------------------------~EA~val~~LE~G~DGVll~-~~d~~ev~~l~~~~~~ 205 (247)
.+.+..+.++..|.+||+++ .++++|+++.+++++.
T Consensus 92 ~~~~~~~~~E~nP~LG~RgiR~~l~~p~~~~~ql~Ai~ra~~~G~~~ImvPmV~s~~E~~~a~~~v~~ 159 (324)
T 2xz9_A 92 ELPYLDMPKEMNPFLGYRAIRLCLDRPDIFKTQLRAILRASAYGNVQIMYPMISSVEEVRKANSILEE 159 (324)
T ss_dssp CCTTTCCCCCSCGGGSSBTHHHHHHCHHHHHHHHHHHHHHGGGSCEEEEECSCCCHHHHHHHHHHHHH
T ss_pred hhhhhccccccCcccccceeeeeccchhhHHHHHHHHHHHHhCCCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 34577888999999999885 5679998778877754
No 82
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=70.52 E-value=14 Score=26.51 Aligned_cols=70 Identities=20% Similarity=0.256 Sum_probs=41.4
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~--~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~ 203 (247)
..+.+|++..-.. ..--.++..+.. .+..++..... .+......+++.|+++++.+|-++.++.+.-+.+
T Consensus 51 ~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~ii~~s~~-~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~ 122 (137)
T 3hdg_A 51 APDVIITDIRMPK-LGGLEMLDRIKAGGAKPYVIVISAF-SEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDF 122 (137)
T ss_dssp CCSEEEECSSCSS-SCHHHHHHHHHHTTCCCEEEECCCC-CCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCcEEEEecC-cChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHH
Confidence 4567777654222 122233333322 34455555443 3344567789999999999999999776544433
No 83
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=70.34 E-value=42 Score=27.76 Aligned_cols=123 Identities=11% Similarity=0.028 Sum_probs=61.6
Q ss_pred EEEEe--CchhHHHHHHHhCCcEEEecCc---chH----HHhhccc--e-eEEeeeeecCCceecCCCCeEEEEEEecCh
Q 025857 53 VWIWT--ESKQVMTAAVERGWNTFVFLSE---NQQ----LAIDWST--I-ALLDPLFIKEGEVYDSGDRRVGSIIEVSTP 120 (247)
Q Consensus 53 vWiW~--~~KevvT~ALEsG~d~~v~~~~---~~e----~~~~lg~--i-~~i~pl~i~~g~~~~~~g~~va~~~~I~~~ 120 (247)
+++-. .+.+.+..+++.|+|.+++... +.+ ..+.++. + --+++.. ++| .+.+.+.+.
T Consensus 77 vi~~ggI~~~~~~~~~~~~Gad~V~lg~~~l~~p~~~~~~~~~~g~~~i~~~~~~~~-~~g----------~~~v~~~g~ 145 (253)
T 1thf_D 77 FTVGGGIHDFETASELILRGADKVSINTAAVENPSLITQIAQTFGSQAVVVAIDAKR-VDG----------EFMVFTYSG 145 (253)
T ss_dssp EEEESSCCSHHHHHHHHHTTCSEEEESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEE-ETT----------EEEEEETTT
T ss_pred EEEeCCCCCHHHHHHHHHcCCCEEEEChHHHhChHHHHHHHHHcCCCcEEEEEEEEc-cCC----------cEEEEECCC
Confidence 66632 4567799999999999998642 222 2233332 2 1223310 011 022222221
Q ss_pred ------hhHhhhccc-cCCCCeEEEecCCC----eeechhhhhhcc-cCCCceEEE--EcCCHHHHHHHHHHhhcccCeE
Q 025857 121 ------QELQQLQPA-DGQAENIVIDLPDW----QVIPAENIVASF-QGSGKTVFA--ISKTPSEAQIFLEALEQGLGGI 186 (247)
Q Consensus 121 ------e~le~a~~~-~~~~~~vVv~~~DW----tiIPlENlIA~~-q~~~~~lia--~v~~~~EA~val~~LE~G~DGV 186 (247)
..++.+... ...++.+++...+- +-..+|.+ +++ +..+..+++ .++++++++.++ +.|+|||
T Consensus 146 ~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~~-~~l~~~~~ipvia~GGI~~~~d~~~~~---~~Gadgv 221 (253)
T 1thf_D 146 KKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMI-RFVRPLTTLPIIASGGAGKMEHFLEAF---LAGADAA 221 (253)
T ss_dssp TEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTSCSCCCHHHH-HHHGGGCCSCEEEESCCCSHHHHHHHH---HTTCSEE
T ss_pred ccccCCCHHHHHHHHHHCCCCEEEEEeccCCCCCCCCCHHHH-HHHHHhcCCCEEEECCCCCHHHHHHHH---HcCChHH
Confidence 112222111 12467777763221 11223332 322 222445666 357888888766 5899999
Q ss_pred EEec
Q 025857 187 VLKV 190 (247)
Q Consensus 187 ll~~ 190 (247)
++-.
T Consensus 222 ~vGs 225 (253)
T 1thf_D 222 LAAS 225 (253)
T ss_dssp EESH
T ss_pred HHHH
Confidence 9864
No 84
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=70.33 E-value=11 Score=27.61 Aligned_cols=69 Identities=13% Similarity=0.200 Sum_probs=40.3
Q ss_pred CCCCeEEEecCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 131 GQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 131 ~~~~~vVv~~~DWtiIPlENlIA~~q--~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
...+-+|++..-... .--.++..+. .....+|...... +......+++.|++|++.+|-+++++.+..+
T Consensus 66 ~~~dlvi~D~~l~~~-~g~~~~~~l~~~~~~~~ii~lt~~~-~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~ 136 (146)
T 4dad_A 66 DAFDILMIDGAALDT-AELAAIEKLSRLHPGLTCLLVTTDA-SSQTLLDAMRAGVRDVLRWPLEPRALDDALK 136 (146)
T ss_dssp TTCSEEEEECTTCCH-HHHHHHHHHHHHCTTCEEEEEESCC-CHHHHHHHHTTTEEEEEESSCCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCc-cHHHHHHHHHHhCCCCcEEEEeCCC-CHHHHHHHHHhCCceeEcCCCCHHHHHHHHH
Confidence 356777776542221 1112222222 2345566555433 3355677889999999999999997765443
No 85
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=70.30 E-value=12 Score=33.81 Aligned_cols=107 Identities=11% Similarity=0.150 Sum_probs=60.0
Q ss_pred hhHHHHHHHhCCcEEEecCc--chHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeEE
Q 025857 60 KQVMTAAVERGWNTFVFLSE--NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 137 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~~--~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vV 137 (247)
.+.+..+++.|++.+.+.-+ ..+.++.+.. .|.+ ++..+.+.++...+.. ..+|+++
T Consensus 112 ~~~~~~~~~~g~~~V~~~~g~~~~~~i~~~~~-----------------~g~~--v~~~v~t~~~a~~a~~--~GaD~i~ 170 (369)
T 3bw2_A 112 DAKLAVLLDDPVPVVSFHFGVPDREVIARLRR-----------------AGTL--TLVTATTPEEARAVEA--AGADAVI 170 (369)
T ss_dssp HHHHHHHHHSCCSEEEEESSCCCHHHHHHHHH-----------------TTCE--EEEEESSHHHHHHHHH--TTCSEEE
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHH-----------------CCCe--EEEECCCHHHHHHHHH--cCCCEEE
Confidence 67788899999998776421 1334433221 1222 3345677776554443 3589999
Q ss_pred EecCC-----Cee----------echhhhhhcccC-CCceEEEE--cCCHHHHHHHHHHhhcccCeEEEec
Q 025857 138 IDLPD-----WQV----------IPAENIVASFQG-SGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 138 v~~~D-----Wti----------IPlENlIA~~q~-~~~~lia~--v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
+.... .+. ++.-.++.++.. .+..|++. +.|.+++.-+ |+.|+|||.+-+
T Consensus 171 v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI~~~~~~~~~---l~~GAd~V~vGs 238 (369)
T 3bw2_A 171 AQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGIMRGGQIAAV---LAAGADAAQLGT 238 (369)
T ss_dssp EECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHH---HHTTCSEEEESH
T ss_pred EeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCCCCHHHHHHH---HHcCCCEEEECh
Confidence 86531 111 342344444321 23445554 3577776655 458999999753
No 86
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=70.08 E-value=4.3 Score=36.00 Aligned_cols=113 Identities=9% Similarity=0.110 Sum_probs=60.6
Q ss_pred chhHHHHHHHhCCcEEEecC---cchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEec-ChhhHhhhccccCCCC
Q 025857 59 SKQVMTAAVERGWNTFVFLS---ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAE 134 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~~---~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~-~~e~le~a~~~~~~~~ 134 (247)
-...+..|-|.|+|++++|+ ++.+..++ . .+..|.....++.-+ +++.++.++......=
T Consensus 105 ~e~F~~~~~~aGvdG~IipDLP~eE~~~~~~---~-------------~~~~Gl~~I~lvaP~t~~eRi~~ia~~a~gFi 168 (252)
T 3tha_A 105 LEKFVKKAKSLGICALIVPELSFEESDDLIK---E-------------CERYNIALITLVSVTTPKERVKKLVKHAKGFI 168 (252)
T ss_dssp HHHHHHHHHHTTEEEEECTTCCGGGCHHHHH---H-------------HHHTTCEECEEEETTSCHHHHHHHHTTCCSCE
T ss_pred HHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH---H-------------HHHcCCeEEEEeCCCCcHHHHHHHHHhCCCeE
Confidence 46789999999999999864 22211111 0 011122222222222 3566666665544444
Q ss_pred eEEEe--cCCC-eee--chhhhhhcccCC-CceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 135 NIVID--LPDW-QVI--PAENIVASFQGS-GKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 135 ~vVv~--~~DW-tiI--PlENlIA~~q~~-~~~lia--~v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
|.|-. .++= +-+ +++++++++.+. +..++. .+++.++|+.+ .+ ++|||++-+.
T Consensus 169 Y~Vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~a~~~---~~-~ADGVIVGSA 229 (252)
T 3tha_A 169 YLLASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRM---RK-VADGVIVGTS 229 (252)
T ss_dssp EEECCSCSSSCSHHHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHH---TT-TSSEEEECHH
T ss_pred EEEecCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEcCcCCHHHHHHH---Hh-cCCEEEECHH
Confidence 44321 1222 222 266778876543 223333 35799998854 34 6999998764
No 87
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=69.57 E-value=14 Score=30.10 Aligned_cols=49 Identities=29% Similarity=0.260 Sum_probs=29.0
Q ss_pred CCCeEEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll 188 (247)
.++.+.+...+. +++.+...+ +. ..+...+.+.+|++. +.+.|+|.|++
T Consensus 94 gad~v~l~~~~~---~~~~~~~~~-g~-~~~~~s~~t~~e~~~---a~~~g~d~v~~ 142 (227)
T 2tps_A 94 KADGIHIGQEDA---NAKEVRAAI-GD-MILGVSAHTMSEVKQ---AEEDGADYVGL 142 (227)
T ss_dssp TCSEEEECTTSS---CHHHHHHHH-TT-SEEEEEECSHHHHHH---HHHHTCSEEEE
T ss_pred CCCEEEECCCcc---CHHHHHHhc-CC-cEEEEecCCHHHHHH---HHhCCCCEEEE
Confidence 467777754443 344444333 22 223333588988655 45789999996
No 88
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=69.29 E-value=12 Score=33.59 Aligned_cols=53 Identities=17% Similarity=0.006 Sum_probs=39.4
Q ss_pred chhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 025857 147 PAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (247)
Q Consensus 147 PlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~ 203 (247)
|++..-+.+ +...+|...+.|.+||+.++ +.|+|.|+|.+=++.++++..+.+
T Consensus 185 av~~ar~~~-~~~~~IgVev~t~eea~eA~---~aGaD~I~ld~~~~~~~k~av~~v 237 (286)
T 1x1o_A 185 AVRRAKARA-PHYLKVEVEVRSLEELEEAL---EAGADLILLDNFPLEALREAVRRV 237 (286)
T ss_dssp HHHHHHHHS-CTTSCEEEEESSHHHHHHHH---HHTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCCEEEEEeCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHh
Confidence 444444433 23347888999999987654 679999999999999888777665
No 89
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=69.21 E-value=13 Score=27.37 Aligned_cols=84 Identities=19% Similarity=0.240 Sum_probs=43.0
Q ss_pred EecChhhHhhhccccCCCCeEEEecCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 025857 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (247)
Q Consensus 116 ~I~~~e~le~a~~~~~~~~~vVv~~~DWtiIPlENlIA~~q--~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~ 193 (247)
...+.++...........+.+|++..-.. ..--.++..+. ..+..++..... .+......+++.|++|++.+|-++
T Consensus 34 ~~~~~~~a~~~l~~~~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~ii~ls~~-~~~~~~~~~~~~g~~~~l~kp~~~ 111 (154)
T 2qsj_A 34 GAETVSDALAFLEADNTVDLILLDVNLPD-AEAIDGLVRLKRFDPSNAVALISGE-TDHELIRAALEAGADGFIPKSADP 111 (154)
T ss_dssp EESSHHHHHHHHHTTCCCSEEEECC-------CHHHHHHHHHHCTTSEEEEC------CHHHHHHHHTTCCBBCCTTSCH
T ss_pred EecCHHHHHHHHhccCCCCEEEEeCCCCC-CchHHHHHHHHHhCCCCeEEEEeCC-CCHHHHHHHHHccCCEEEeCCCCH
Confidence 34444443333322134566666543211 11122333332 234556655443 445677788999999999999999
Q ss_pred HHHHHHHH
Q 025857 194 KAVLALKE 201 (247)
Q Consensus 194 ~ev~~l~~ 201 (247)
+++.+.-+
T Consensus 112 ~~L~~~l~ 119 (154)
T 2qsj_A 112 QVLIHAVS 119 (154)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 97765433
No 90
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=68.83 E-value=9.3 Score=33.74 Aligned_cols=70 Identities=16% Similarity=0.191 Sum_probs=47.9
Q ss_pred cChhhHhhhccccCCCCeEEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 025857 118 STPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (247)
Q Consensus 118 ~~~e~le~a~~~~~~~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d 192 (247)
-++.+++.+.. .++|.|++-..+-..--++.++..++.-+..++..++|.+|++.++ +.|+|-|-+.+.|
T Consensus 123 id~~qv~~A~~--~GAD~VlLi~a~l~~~~l~~l~~~a~~lGl~~lvev~t~ee~~~A~---~~Gad~IGv~~r~ 192 (272)
T 3qja_A 123 VQPYQIHEARA--HGADMLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEADRAL---KAGAKVIGVNARD 192 (272)
T ss_dssp CSHHHHHHHHH--TTCSEEEEEGGGSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH---HHTCSEEEEESBC
T ss_pred cCHHHHHHHHH--cCCCEEEEecccCCHHHHHHHHHHHHHCCCcEEEEcCCHHHHHHHH---HCCCCEEEECCCc
Confidence 35556666653 3578777643332222356667766666778899999999998776 5699999998755
No 91
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=68.78 E-value=24 Score=25.91 Aligned_cols=67 Identities=21% Similarity=0.267 Sum_probs=39.4
Q ss_pred CCCeEEEecCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q--~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~ 200 (247)
..+-+|++..-.. ..--.++..+. .....++...... +......+++.|++|++.+|-+++++.+.-
T Consensus 61 ~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~~ii~~s~~~-~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i 129 (152)
T 3eul_A 61 LPDVALLDYRMPG-MDGAQVAAAVRSYELPTRVLLISAHD-EPAIVYQALQQGAAGFLLKDSTRTEIVKAV 129 (152)
T ss_dssp CCSEEEEETTCSS-SCHHHHHHHHHHTTCSCEEEEEESCC-CHHHHHHHHHTTCSEEEETTCCHHHHHHHH
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCeEEEEEccC-CHHHHHHHHHcCCCEEEecCCCHHHHHHHH
Confidence 3566666644222 11122333332 2344566555443 334567888999999999999998776543
No 92
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=68.74 E-value=19 Score=33.84 Aligned_cols=112 Identities=14% Similarity=0.089 Sum_probs=64.6
Q ss_pred CchhHHHHHHHhCCcEEEecC--cc----hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccC
Q 025857 58 ESKQVMTAAVERGWNTFVFLS--EN----QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG 131 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~--~~----~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~ 131 (247)
+..+.+..++|.|+|.+.+.. .+ .+.++++.+-. | +.++. ...+.+.++.+.+...
T Consensus 255 ~~~~~a~~~~~aG~d~v~i~~~~G~~~~~~~~i~~i~~~~---~------------~~pvi-~~~v~t~~~a~~l~~a-- 316 (514)
T 1jcn_A 255 DDKYRLDLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQKY---P------------HLQVI-GGNVVTAAQAKNLIDA-- 316 (514)
T ss_dssp THHHHHHHHHHTTCSEEEECCSCCCSHHHHHHHHHHHHHC---T------------TCEEE-EEEECSHHHHHHHHHH--
T ss_pred hhHHHHHHHHHcCCCEEEeeccCCcchhHHHHHHHHHHhC---C------------CCceE-ecccchHHHHHHHHHc--
Confidence 346788889999999988732 11 12233222110 1 11211 1256777776665543
Q ss_pred CCCeEEEecC-C----------Ce---eechhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 025857 132 QAENIVIDLP-D----------WQ---VIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 132 ~~~~vVv~~~-D----------Wt---iIPlENlIA~~q~~~~~lia--~v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
.++++++... + |- ...++.+-+..+..+..||+ .+++.+++..++. .|+|+|.+-.
T Consensus 317 Gad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~~ipVia~GGI~~~~di~kala---~GAd~V~iG~ 388 (514)
T 1jcn_A 317 GVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALA---LGASTVMMGS 388 (514)
T ss_dssp TCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHH---TTCSEEEEST
T ss_pred CCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHH---cCCCeeeECH
Confidence 4788887320 1 22 22233333333333567888 7789988877664 6999999976
No 93
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=68.68 E-value=29 Score=24.73 Aligned_cols=68 Identities=10% Similarity=0.066 Sum_probs=41.9
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~----~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
..+.++++..-.. ..--.++..++. .+..++......+ ......+++.|+++++.+|-+++++.+.-+
T Consensus 54 ~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~~~~ii~~s~~~~-~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~ 125 (143)
T 3cnb_A 54 KPDVVMLDLMMVG-MDGFSICHRIKSTPATANIIVIAMTGALT-DDNVSRIVALGAETCFGKPLNFTLLEKTIK 125 (143)
T ss_dssp CCSEEEEETTCTT-SCHHHHHHHHHTSTTTTTSEEEEEESSCC-HHHHHHHHHTTCSEEEESSCCHHHHHHHHH
T ss_pred CCCEEEEecccCC-CcHHHHHHHHHhCccccCCcEEEEeCCCC-HHHHHHHHhcCCcEEEeCCCCHHHHHHHHH
Confidence 4577777654322 222234444433 4456666655433 345567889999999999999987765443
No 94
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=68.51 E-value=31 Score=31.47 Aligned_cols=111 Identities=11% Similarity=0.123 Sum_probs=62.4
Q ss_pred CchhHHHHHHHhCCcEEEecC--cc----hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccC
Q 025857 58 ESKQVMTAAVERGWNTFVFLS--EN----QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG 131 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~--~~----~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~ 131 (247)
+..+.+..++|.|+|.+.+.. .+ .+.++.+.+. .| +.++.+ ..+.+.++.+.+.. .
T Consensus 153 ~~~~~a~~~~~~G~d~i~i~~~~g~~~~~~e~i~~ir~~---~~------------~~pviv-~~v~~~~~a~~a~~--~ 214 (404)
T 1eep_A 153 DTIERVEELVKAHVDILVIDSAHGHSTRIIELIKKIKTK---YP------------NLDLIA-GNIVTKEAALDLIS--V 214 (404)
T ss_dssp THHHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHH---CT------------TCEEEE-EEECSHHHHHHHHT--T
T ss_pred hHHHHHHHHHHCCCCEEEEeCCCCChHHHHHHHHHHHHH---CC------------CCeEEE-cCCCcHHHHHHHHh--c
Confidence 346778889999999987621 22 1222211111 00 122221 34567776666553 3
Q ss_pred CCCeEEEec-----------CCCeeec----hhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 025857 132 QAENIVIDL-----------PDWQVIP----AENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 132 ~~~~vVv~~-----------~DWtiIP----lENlIA~~q~~~~~lia--~v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
.+|++++.. .+|. .| +..+...++..+..||+ .+.+.+++..++. .|+|+|.+-+
T Consensus 215 Gad~I~vg~~~G~~~~~~~~~~~g-~p~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala---~GAd~V~iG~ 286 (404)
T 1eep_A 215 GADCLKVGIGPGSICTTRIVAGVG-VPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIA---AGADSVMIGN 286 (404)
T ss_dssp TCSEEEECSSCSTTSHHHHHHCCC-CCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHH---HTCSEEEECH
T ss_pred CCCEEEECCCCCcCcCccccCCCC-cchHHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHH---cCCCHHhhCH
Confidence 588988821 2331 22 23333333334667888 6788888877665 5999999843
No 95
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=68.41 E-value=14 Score=29.56 Aligned_cols=72 Identities=13% Similarity=0.155 Sum_probs=42.1
Q ss_pred CCCeEEEecCCCeeechhhhhhccc------CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhcc
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQ------GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDG 205 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q------~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~~~ 205 (247)
..+.+|++..-+.. .--.++..+. +.+..+|.......+......+++.|++++|.+|-+ .-...++.++..
T Consensus 119 ~~dlillD~~lp~~-~G~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~-~L~~~i~~~l~~ 196 (206)
T 3mm4_A 119 PFDYIFMDCQMPEM-DGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN-QLANVIREIESK 196 (206)
T ss_dssp SCSEEEEESCCSSS-CHHHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT-THHHHHHHHC--
T ss_pred CCCEEEEcCCCCCC-CHHHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH-HHHHHHHHHHhh
Confidence 46777776543221 1122333332 345667777765534455667889999999999988 444445555443
No 96
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=68.17 E-value=12 Score=31.21 Aligned_cols=107 Identities=14% Similarity=0.040 Sum_probs=55.9
Q ss_pred eEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeEEEecCCCe---eechhhhhhcccC-CCceEEEE-
Q 025857 91 ALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQ---VIPAENIVASFQG-SGKTVFAI- 165 (247)
Q Consensus 91 ~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vVv~~~DWt---iIPlENlIA~~q~-~~~~lia~- 165 (247)
.+|..+.+.+|..+....-...-+....|+.++..... ...++++-+...|.. ..+. .+|.++.+ .+..++..
T Consensus 5 ~iip~idl~~g~~V~~~~g~~~~~~~~~d~~~~a~~~~-~~Gad~i~v~~~d~~~~~~~~~-~~i~~i~~~~~ipv~v~g 82 (244)
T 1vzw_A 5 ELLPAVDVRDGQAVRLVHGESGTETSYGSPLEAALAWQ-RSGAEWLHLVDLDAAFGTGDNR-ALIAEVAQAMDIKVELSG 82 (244)
T ss_dssp EEEEEEEEETTEEBC--------CCBCCCHHHHHHHHH-HTTCSEEEEEEHHHHHTSCCCH-HHHHHHHHHCSSEEEEES
T ss_pred EEEEEEEEECCEEEEeeccccccceecCCHHHHHHHHH-HcCCCEEEEecCchhhcCCChH-HHHHHHHHhcCCcEEEEC
Confidence 34544666788777633211112222235444333332 245788777654332 3444 55555432 34455553
Q ss_pred -cCCHHHHHHHHHHhhcccCeEEEecC---CHHHHHHHHHh
Q 025857 166 -SKTPSEAQIFLEALEQGLGGIVLKVE---DVKAVLALKEY 202 (247)
Q Consensus 166 -v~~~~EA~val~~LE~G~DGVll~~~---d~~ev~~l~~~ 202 (247)
++++++++.+ ++.|+|+|++.+. +|..+.++.+.
T Consensus 83 gI~~~~~~~~~---l~~Gad~V~lg~~~l~~p~~~~~~~~~ 120 (244)
T 1vzw_A 83 GIRDDDTLAAA---LATGCTRVNLGTAALETPEWVAKVIAE 120 (244)
T ss_dssp SCCSHHHHHHH---HHTTCSEEEECHHHHHCHHHHHHHHHH
T ss_pred CcCCHHHHHHH---HHcCCCEEEECchHhhCHHHHHHHHHH
Confidence 4788876655 5579999999985 45555555443
No 97
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=68.07 E-value=17 Score=27.14 Aligned_cols=113 Identities=11% Similarity=0.030 Sum_probs=64.3
Q ss_pred CcEEEEEeC---chhHHHHHHHhCCcEEEecCcchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhh
Q 025857 50 PKRVWIWTE---SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQL 126 (247)
Q Consensus 50 ~K~vWiW~~---~KevvT~ALEsG~d~~v~~~~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a 126 (247)
++.+.|-=- -..+.....+.|++-+++.. +.+.++++..- | ....+...++++.++.+
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~-~~~~~~~~~~~-----------------~-~~~~~gd~~~~~~l~~~ 66 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDK-SKEKIELLEDE-----------------G-FDAVIADPTDESFYRSL 66 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEES-CHHHHHHHHHT-----------------T-CEEEECCTTCHHHHHHS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEC-CHHHHHHHHHC-----------------C-CcEEECCCCCHHHHHhC
Confidence 344555321 35667777788998777653 34444433211 1 11233445566666554
Q ss_pred ccccCCCCeEEEecCCCeeechhhhhh----cccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 127 QPADGQAENIVIDLPDWQVIPAENIVA----SFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 127 ~~~~~~~~~vVv~~~DWtiIPlENlIA----~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
. ...++.+|+...+.. .|+.+ .-.+ ..++++.+++.+.++.+ .+.|+|-|+....
T Consensus 67 ~--~~~~d~vi~~~~~~~----~n~~~~~~a~~~~-~~~iia~~~~~~~~~~l---~~~G~~~vi~p~~ 125 (141)
T 3llv_A 67 D--LEGVSAVLITGSDDE----FNLKILKALRSVS-DVYAIVRVSSPKKKEEF---EEAGANLVVLVAD 125 (141)
T ss_dssp C--CTTCSEEEECCSCHH----HHHHHHHHHHHHC-CCCEEEEESCGGGHHHH---HHTTCSEEEEHHH
T ss_pred C--cccCCEEEEecCCHH----HHHHHHHHHHHhC-CceEEEEEcChhHHHHH---HHcCCCEEECHHH
Confidence 2 235788776655432 23222 2224 56899999999988765 4679998775544
No 98
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=67.93 E-value=6.6 Score=33.42 Aligned_cols=36 Identities=11% Similarity=0.075 Sum_probs=28.8
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEecCcchHHHh
Q 025857 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSENQQLAI 85 (247)
Q Consensus 48 ~~~K~vWiW~-~~KevvT~ALEsG~d~~v~~~~~~e~~~ 85 (247)
.+-+.|++|| .+++.+...++.|+|+|+... .++++
T Consensus 208 ~~G~~v~~WTvn~~~~~~~l~~~GVdgIiTD~--P~~~~ 244 (252)
T 3qvq_A 208 AAGYKVLAFTINDESLALKLYNQGLDAVFSDY--PQKIQ 244 (252)
T ss_dssp HTTCEEEEECCCCHHHHHHHHHTTCCEEEESS--HHHHH
T ss_pred HCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCC--HHHHH
Confidence 4667899999 679999999999999999743 44443
No 99
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=67.86 E-value=14 Score=26.40 Aligned_cols=68 Identities=10% Similarity=0.097 Sum_probs=39.3
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~-~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~ 200 (247)
..+.+|++..-..-..-..++..++. .+..++......+ ......+++.|+++++.+|-++.++.+.-
T Consensus 54 ~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ii~ls~~~~-~~~~~~~~~~g~~~~l~kp~~~~~l~~~i 122 (140)
T 3cg0_A 54 RPDIALVDIMLCGALDGVETAARLAAGCNLPIIFITSSQD-VETFQRAKRVNPFGYLAKPVAADTLHRSI 122 (140)
T ss_dssp CCSEEEEESSCCSSSCHHHHHHHHHHHSCCCEEEEECCCC-HHHHHHHHTTCCSEEEEESCCHHHHHHHH
T ss_pred CCCEEEEecCCCCCCCHHHHHHHHHhCCCCCEEEEecCCC-HHHHHHHHhcCCCEEEeCCCCHHHHHHHH
Confidence 35666666432211122223333322 3455665554433 34556788999999999999998775443
No 100
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE consortium, SGC, transferase; 2.70A {Plasmodium falciparum 3D7}
Probab=67.61 E-value=3.1 Score=40.73 Aligned_cols=133 Identities=17% Similarity=0.174 Sum_probs=82.7
Q ss_pred chhHH-HHHHHhCCcEEEecC-cchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeE
Q 025857 59 SKQVM-TAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (247)
Q Consensus 59 ~Kevv-T~ALEsG~d~~v~~~-~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~v 136 (247)
|++-+ .-|+|.|+|.|.++- ..++.++++.+ ++...|..+.++..|++++.++.+.+.....|-+
T Consensus 218 D~~dl~~f~~~~~vD~Ia~SFVr~a~Dv~~~r~-------------~l~~~g~~i~IIAKIE~~eav~nldeIl~~sDGI 284 (520)
T 3khd_A 218 DKNDILNFAIPMGCNFIAASFIQSADDVRLIRN-------------LLGPRGRHIKIIPKIENIEGIIHFDKILAESDGI 284 (520)
T ss_dssp HHHHHHHTHHHHTCCEEEETTCCSHHHHHHHHH-------------HHTTTTTTSEEEEEECSHHHHHTHHHHHHHSSCE
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHH-------------HHHhcCCCCcEEEEECCHHHHHhHHHHHHhCCcE
Confidence 56666 999999999877541 22344433322 2223355677899999999988886666566777
Q ss_pred EEecCCCe-eechhhhh-------hcccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC-----
Q 025857 137 VIDLPDWQ-VIPAENIV-------ASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED----- 192 (247)
Q Consensus 137 Vv~~~DWt-iIPlENlI-------A~~q~~~~~lia~-----------v~~~~EA~val~~LE~G~DGVll~~~d----- 192 (247)
+|-..|-- =||+|.+- .+....+.-+|.. ..+-.|+--...+.--|+|+|+|..+.
T Consensus 285 MVARGDLgvEi~~e~vp~~Qk~iI~~c~~aGKPVi~ATQMLeSMi~~p~PTRAEvsDVanAVldGaDavMLSgETA~G~y 364 (520)
T 3khd_A 285 MIARGDLGMEISPEKVFLAQKLMISKCNLQGKPIITATQMLESMTKNPRPTRAEVTDVANAVLDGTDCVMLSGETAGGKF 364 (520)
T ss_dssp EECHHHHTTTSCGGGHHHHHHHHHHHHHHHTCCEEECCCCCGGGGTCSSCCHHHHHHHHHHHHHTCSEEEESHHHHSCSC
T ss_pred EEccccccccCCHHHHHHHHHHHHHHHHHcCCCeEEeehhhHHHhcCCCccHHHHHHHHHHHHhCCCEEEecccccCCcC
Confidence 76533321 14666643 3322222223321 236778888889999999999997543
Q ss_pred -HHHHHHHHHhhc
Q 025857 193 -VKAVLALKEYFD 204 (247)
Q Consensus 193 -~~ev~~l~~~~~ 204 (247)
.+.|+-+.+++.
T Consensus 365 PveaV~~M~~I~~ 377 (520)
T 3khd_A 365 PVEAVTIMSKICL 377 (520)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 455666666554
No 101
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=67.50 E-value=31 Score=24.92 Aligned_cols=66 Identities=9% Similarity=0.132 Sum_probs=39.6
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC-CHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE-DVKAVLAL 199 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~----~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~-d~~ev~~l 199 (247)
..+.+|++..-.. ..--.++..+.. .+..++...... +......+++.|+++++.+|- +++++.+.
T Consensus 51 ~~dlii~D~~l~~-~~g~~~~~~lr~~~~~~~~pii~~s~~~-~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~ 121 (144)
T 3kht_A 51 KYDLIILDIGLPI-ANGFEVMSAVRKPGANQHTPIVILTDNV-SDDRAKQCMAAGASSVVDKSSNNVTDFYGR 121 (144)
T ss_dssp CCSEEEECTTCGG-GCHHHHHHHHHSSSTTTTCCEEEEETTC-CHHHHHHHHHTTCSEEEECCTTSHHHHHHH
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhcccccCCCEEEEeCCC-CHHHHHHHHHcCCCEEEECCCCcHHHHHHH
Confidence 4566666544222 122234444433 345566655432 334466778999999999999 99877554
No 102
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, STRU genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A
Probab=67.42 E-value=2.8 Score=40.92 Aligned_cols=135 Identities=19% Similarity=0.197 Sum_probs=82.9
Q ss_pred CchhHH-HHHHHhCCcEEEecC-cchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCe
Q 025857 58 ESKQVM-TAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (247)
Q Consensus 58 ~~Kevv-T~ALEsG~d~~v~~~-~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~ 135 (247)
.|++-+ .-|+|.|+|.|.++- ..++.++++.+ ++...|..+.++..|.+++.++.+.+.....|-
T Consensus 208 kD~~Dl~~f~~~~~vD~Ia~SFVr~a~Dv~~~r~-------------~l~~~~~~~~iiaKIE~~eav~nldeIl~~sDg 274 (511)
T 3gg8_A 208 KDKHDILNFGIPMGCNFIAASFVQSADDVRYIRG-------------LLGPRGRHIRIIPKIENVEGLVNFDEILAEADG 274 (511)
T ss_dssp HHHHHHHHTTTTTTCCEEEETTCCSHHHHHHHHH-------------HHTGGGTTCEEEEEECSHHHHHTHHHHHHHCSC
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHH-------------HHHhcCCCCeEEEEECCHHHHHhHHHHHHhCCe
Confidence 356666 899999999877541 22343333322 122233456788899999998887666666788
Q ss_pred EEEecCCCe-eechhhh-------hhcccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC----
Q 025857 136 IVIDLPDWQ-VIPAENI-------VASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (247)
Q Consensus 136 vVv~~~DWt-iIPlENl-------IA~~q~~~~~lia~-----------v~~~~EA~val~~LE~G~DGVll~~~d---- 192 (247)
++|-..|-- =||+|.+ |.+....+.-+|.. ..+-.|+--...+.--|+|+|+|..+.
T Consensus 275 imVaRGDLgvei~~e~v~~~qk~ii~~~~~~gkpvi~ATQmLeSMi~~p~PTRAEvsDVAnAV~dGaDavMLSgETA~G~ 354 (511)
T 3gg8_A 275 IMIARGDLGMEIPPEKVFLAQKMMIAKCNVVGKPVITATQMLESMIKNPRPTRAEAADVANAVLDGTDCVMLSGETANGE 354 (511)
T ss_dssp EEEEHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCEEEESSSSGGGGTCSSCCHHHHHHHHHHHHHTCSEEEESHHHHTCS
T ss_pred EEEecchhcCcCCHHHHHHHHHHHHHHHHHcCCCeEEehHHHHHhhcCCCccHHHHHHHHHHHHhCCCEEEecccccCCC
Confidence 777543322 1466664 33333333233431 236677777888999999999996543
Q ss_pred --HHHHHHHHHhhcc
Q 025857 193 --VKAVLALKEYFDG 205 (247)
Q Consensus 193 --~~ev~~l~~~~~~ 205 (247)
.+.|+-+.+++.+
T Consensus 355 yPveaV~~M~~I~~~ 369 (511)
T 3gg8_A 355 FPVITVETMARICYE 369 (511)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 3555555655543
No 103
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=67.40 E-value=42 Score=26.13 Aligned_cols=29 Identities=10% Similarity=0.175 Sum_probs=23.3
Q ss_pred HHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 025857 171 EAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (247)
Q Consensus 171 EA~val~~LE~G~DGVll~~~d~~ev~~l 199 (247)
+......+++.|+++++.+|-++.++...
T Consensus 96 ~~~~~~~~~~~ga~~~l~KP~~~~~L~~~ 124 (205)
T 1s8n_A 96 QRDLVERARDAGAMAYLVKPFSISDLIPA 124 (205)
T ss_dssp GHHHHHTTGGGSCEEEEEESCCHHHHHHH
T ss_pred CHHHHHHHHhcCCcEEEeCCCCHHHHHHH
Confidence 34556788999999999999998876543
No 104
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=67.36 E-value=22 Score=31.33 Aligned_cols=107 Identities=11% Similarity=0.075 Sum_probs=60.7
Q ss_pred hhHHHHHHHhCCcEEEecCcc-hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeEEE
Q 025857 60 KQVMTAAVERGWNTFVFLSEN-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~~~-~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vVv 138 (247)
.+.+..++|.|++.+.+.-++ .+.++.+. +.|.+ ++..+.+.++...+. ...+|++++
T Consensus 86 ~~~~~~~~~~g~d~V~~~~g~p~~~~~~l~-----------------~~gi~--vi~~v~t~~~a~~~~--~~GaD~i~v 144 (328)
T 2gjl_A 86 AEYRAAIIEAGIRVVETAGNDPGEHIAEFR-----------------RHGVK--VIHKCTAVRHALKAE--RLGVDAVSI 144 (328)
T ss_dssp HHHHHHHHHTTCCEEEEEESCCHHHHHHHH-----------------HTTCE--EEEEESSHHHHHHHH--HTTCSEEEE
T ss_pred HHHHHHHHhcCCCEEEEcCCCcHHHHHHHH-----------------HcCCC--EEeeCCCHHHHHHHH--HcCCCEEEE
Confidence 578999999999998864221 22222221 11222 224466766655443 235788888
Q ss_pred ecCC------CeeechhhhhhcccC-CCceEEEE--cCCHHHHHHHHHHhhcccCeEEEec
Q 025857 139 DLPD------WQVIPAENIVASFQG-SGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 139 ~~~D------WtiIPlENlIA~~q~-~~~~lia~--v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
.+.. ...+|.-.++.++.. .+..|++. +++.+++..++. .|+|||.+-+
T Consensus 145 ~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPviaaGGI~~~~~v~~al~---~GAdgV~vGs 202 (328)
T 2gjl_A 145 DGFECAGHPGEDDIPGLVLLPAAANRLRVPIIASGGFADGRGLVAALA---LGADAINMGT 202 (328)
T ss_dssp ECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHH---HTCSEEEESH
T ss_pred ECCCCCcCCCCccccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH---cCCCEEEECH
Confidence 6531 112344455555432 23445543 467777766554 6999999864
No 105
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=67.25 E-value=8.9 Score=32.28 Aligned_cols=114 Identities=12% Similarity=0.125 Sum_probs=58.4
Q ss_pred chhHHHHHHHhCCcEEEecCcc---------hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccc
Q 025857 59 SKQVMTAAVERGWNTFVFLSEN---------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~~~~---------~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~ 129 (247)
-.+++..+.+.|++.+.+.+-+ .+.++++.+-. --|+.+.+ -+.+.++++.+...
T Consensus 32 ~~~~a~~~~~~Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~~-~iPvi~~g---------------gi~~~~~i~~~~~~ 95 (266)
T 2w6r_A 32 LRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLT-TLPIIASG---------------GAGKMEHFLEAFLA 95 (266)
T ss_dssp HHHHHHHHHHHTCSEEEEEETTTSSCSSCCCHHHHHHHGGGC-CSCEEEES---------------CCCSTHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEEecCcccCCCcccHHHHHHHHHhc-CCCEEEEC---------------CCCCHHHHHHHHHc
Confidence 4678889999999998874211 23333333211 11333322 24566777766543
Q ss_pred cCCCCeEEEecCCC-eeechhhhhhcccCCC---ceEEEEcC-------------C------HHHHHHHHHHhhcccCeE
Q 025857 130 DGQAENIVIDLPDW-QVIPAENIVASFQGSG---KTVFAISK-------------T------PSEAQIFLEALEQGLGGI 186 (247)
Q Consensus 130 ~~~~~~vVv~~~DW-tiIPlENlIA~~q~~~---~~lia~v~-------------~------~~EA~val~~LE~G~DGV 186 (247)
.++.+++-...- ..|+++.+...++..+ .+++..+. + ....+.+..+.+.|++.|
T Consensus 96 --Gad~v~lg~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~d~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i 173 (266)
T 2w6r_A 96 --GADKALAASVFHFREIDMRELKEYLKKHGGSGQAVVVAIDAKRVDGEFMVFTHSGKKNTGILLRDWVVEVEKRGAGEI 173 (266)
T ss_dssp --TCSEEECCCCC------CHHHHHHCC----CCCEEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEE
T ss_pred --CCcHhhhhHHHHhCCCCHHHHHHHHHHcCCCCCEEEEEEEEEecCCCEEEEECCCceecchhHHHHHHHHHHcCCCEE
Confidence 477777766666 4556565555433322 13322221 1 122344455668899999
Q ss_pred EEec
Q 025857 187 VLKV 190 (247)
Q Consensus 187 ll~~ 190 (247)
++..
T Consensus 174 ~~t~ 177 (266)
T 2w6r_A 174 LLTS 177 (266)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9854
No 106
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Probab=67.08 E-value=4 Score=34.85 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=37.2
Q ss_pred CeeechhhhhhcccCCCceEEE-EcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 143 WQVIPAENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 143 WtiIPlENlIA~~q~~~~~lia-~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
+..+. +.+|++++..+.++++ .+++.++++.+ ++.|+|||+ ||+|..+.++.+
T Consensus 189 ~~~~~-~~~v~~~~~~G~~V~~WTvn~~~~~~~l---~~~GVDgIi--TD~P~~~~~~~~ 242 (250)
T 3ks6_A 189 IDTAD-AGLMAQVQAAGLDFGCWAAHTPSQITKA---LDLGVKVFT--TDRPTLAIALRT 242 (250)
T ss_dssp GGGCC-HHHHHHHHHTTCEEEEECCCSHHHHHHH---HHHTCSEEE--ESCHHHHHHHHH
T ss_pred hhhCC-HHHHHHHHHCCCEEEEEeCCCHHHHHHH---HHcCCCEEE--cCCHHHHHHHHH
Confidence 33343 4567777777767665 45777777665 578999998 889997766654
No 107
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=67.02 E-value=30 Score=24.35 Aligned_cols=70 Identities=13% Similarity=0.101 Sum_probs=43.0
Q ss_pred CCeEEEecCCCeeechhhhhhccc--CCCceEEEEcCCHHH----HHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 025857 133 AENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSE----AQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (247)
Q Consensus 133 ~~~vVv~~~DWtiIPlENlIA~~q--~~~~~lia~v~~~~E----A~val~~LE~G~DGVll~~~d~~ev~~l~~~~ 203 (247)
.+-+|++..-.. ..--.++..+. .....++......++ ++.....++.|+++.+.+|-++.++.+.-+.+
T Consensus 47 ~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~ 122 (135)
T 3eqz_A 47 QDIIILDLMMPD-MDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSL 122 (135)
T ss_dssp TEEEEEECCTTT-THHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCC-CCHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHH
Confidence 566666543221 11222333322 234567766665553 57788899999999999999999776544433
No 108
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=66.96 E-value=17 Score=29.66 Aligned_cols=106 Identities=16% Similarity=0.095 Sum_probs=56.3
Q ss_pred chhHHHHHHHhCCcEEEecCcchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeEEE
Q 025857 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~~~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vVv 138 (247)
+.+.+..|++.|+|++.++..+.+..+...+. |.. .++.+.++++...+.. ..++++.+
T Consensus 69 ~~~~i~~a~~~Gad~V~~~~~~~~~~~~~~~~-----------------g~~--~~~g~~t~~e~~~a~~--~G~d~v~v 127 (212)
T 2v82_A 69 KPEQVDALARMGCQLIVTPNIHSEVIRRAVGY-----------------GMT--VCPGCATATEAFTALE--AGAQALKI 127 (212)
T ss_dssp SHHHHHHHHHTTCCEEECSSCCHHHHHHHHHT-----------------TCE--EECEECSHHHHHHHHH--TTCSEEEE
T ss_pred CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHc-----------------CCC--EEeecCCHHHHHHHHH--CCCCEEEE
Confidence 46789999999999998765433333221111 111 0112567777655533 35788776
Q ss_pred ecCCCeeechhhhhhcccCC--CceEEEEcC-CHHHHHHHHHHhhcccCeEEEec
Q 025857 139 DLPDWQVIPAENIVASFQGS--GKTVFAISK-TPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 139 ~~~DWtiIPlENlIA~~q~~--~~~lia~v~-~~~EA~val~~LE~G~DGVll~~ 190 (247)
..++ ...++.+-.-.+.. +..+++.-. +.++++.+ ++.|+|||++-+
T Consensus 128 ~~t~--~~g~~~~~~l~~~~~~~ipvia~GGI~~~~i~~~---~~~Ga~gv~vGs 177 (212)
T 2v82_A 128 FPSS--AFGPQYIKALKAVLPSDIAVFAVGGVTPENLAQW---IDAGCAGAGLGS 177 (212)
T ss_dssp TTHH--HHCHHHHHHHHTTSCTTCEEEEESSCCTTTHHHH---HHHTCSEEEECT
T ss_pred ecCC--CCCHHHHHHHHHhccCCCeEEEeCCCCHHHHHHH---HHcCCCEEEECh
Confidence 3221 12233222111112 245666432 35555544 557999999764
No 109
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=66.82 E-value=21 Score=29.71 Aligned_cols=130 Identities=14% Similarity=0.034 Sum_probs=62.2
Q ss_pred EEEEe--CchhHHHHHHHhCCcEEEecCc---chHHHhh---ccceeEEeeeeecCCceecCCCCeEEEEEEe--cChhh
Q 025857 53 VWIWT--ESKQVMTAAVERGWNTFVFLSE---NQQLAID---WSTIALLDPLFIKEGEVYDSGDRRVGSIIEV--STPQE 122 (247)
Q Consensus 53 vWiW~--~~KevvT~ALEsG~d~~v~~~~---~~e~~~~---lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I--~~~e~ 122 (247)
+++-. .+.+.+..+++.|+|++++... +.+..++ .+. .++-.+-+.+|.+. -.|-. +. .+..+
T Consensus 76 vi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~~p~~~~~~~~~g~-~i~~~~d~~~~~v~-~~g~~-----~~~~~~~~e 148 (241)
T 1qo2_A 76 IQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKSLREIDV-EPVFSLDTRGGRVA-FKGWL-----AEEEIDPVS 148 (241)
T ss_dssp EEEESSCCSHHHHHHHHHTTCCEEEECHHHHHCTTHHHHHHTTTC-EEEEEEEEETTEEC-CTTCS-----SCSCCCHHH
T ss_pred EEEECCCCCHHHHHHHHHCCCCEEEECchHhhChHHHHHHHHcCC-cEEEEEEecCCEEE-ECCce-----ecCCCCHHH
Confidence 66633 4567788899999999998642 2233333 331 11111111111111 01100 00 02222
Q ss_pred HhhhccccCCCCeEEEecCCC----eeechhhhhhcccCCCceEEEE--cCCHHHHHHHHHHh--hcc-cCeEEEec
Q 025857 123 LQQLQPADGQAENIVIDLPDW----QVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEAL--EQG-LGGIVLKV 190 (247)
Q Consensus 123 le~a~~~~~~~~~vVv~~~DW----tiIPlENlIA~~q~~~~~lia~--v~~~~EA~val~~L--E~G-~DGVll~~ 190 (247)
+.... ....++++++...+- +-+.+|.+-.-.+..+..+++. ++++++++.+++.- -.| +|||++-.
T Consensus 149 ~~~~~-~~~G~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~vgs 224 (241)
T 1qo2_A 149 LLKRL-KEYGLEEIVHTEIEKDGTLQEHDFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGR 224 (241)
T ss_dssp HHHHH-HTTTCCEEEEEETTHHHHTCCCCHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECH
T ss_pred HHHHH-HhCCCCEEEEEeecccccCCcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEeeH
Confidence 21111 123567777765321 1123444322222224566764 57899998876540 119 99999864
No 110
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=66.43 E-value=8.6 Score=31.87 Aligned_cols=105 Identities=15% Similarity=0.044 Sum_probs=57.9
Q ss_pred EEeeeeecCCceecCC-CCeEEEEEEecChhhHhhhccccCCCCeEEEecCCC---eeechhhhhhcccC-CCceEEEE-
Q 025857 92 LLDPLFIKEGEVYDSG-DRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDW---QVIPAENIVASFQG-SGKTVFAI- 165 (247)
Q Consensus 92 ~i~pl~i~~g~~~~~~-g~~va~~~~I~~~e~le~a~~~~~~~~~vVv~~~DW---tiIPlENlIA~~q~-~~~~lia~- 165 (247)
+|..+.+.+|..++.. |.+ .-+....++.++...... ..++++-+...|. ...+. .+|.++.+ .+..++..
T Consensus 5 iip~id~~~g~~V~~~~g~~-~~~~~~~d~~~~a~~~~~-~Gad~i~v~~~d~~~~~~~~~-~~i~~i~~~~~ipv~v~g 81 (244)
T 2y88_A 5 LLPAVNVVEGRAVRLVQGKA-GSQTEYGSAVDAALGWQR-DGAEWIHLVDLDAAFGRGSNH-ELLAEVVGKLDVQVELSG 81 (244)
T ss_dssp EEEEEEEETTEEEEEETTEE-EEEEEEEEHHHHHHHHHH-TTCSEEEEEEHHHHTTSCCCH-HHHHHHHHHCSSEEEEES
T ss_pred EEEEEEeECCEEEEeecccc-ccceecCCHHHHHHHHHH-cCCCEEEEEcCcccccCCChH-HHHHHHHHhcCCcEEEEC
Confidence 4444666788777643 322 233333355544443332 3578877764322 23344 55555432 34445443
Q ss_pred -cCCHHHHHHHHHHhhcccCeEEEecC---CHHHHHHHHHh
Q 025857 166 -SKTPSEAQIFLEALEQGLGGIVLKVE---DVKAVLALKEY 202 (247)
Q Consensus 166 -v~~~~EA~val~~LE~G~DGVll~~~---d~~ev~~l~~~ 202 (247)
+.++++++.+ ++.|+|+|++.+. +|..+.++.+.
T Consensus 82 gi~~~~~~~~~---l~~Gad~V~lg~~~l~~p~~~~~~~~~ 119 (244)
T 2y88_A 82 GIRDDESLAAA---LATGCARVNVGTAALENPQWCARVIGE 119 (244)
T ss_dssp SCCSHHHHHHH---HHTTCSEEEECHHHHHCHHHHHHHHHH
T ss_pred CCCCHHHHHHH---HHcCCCEEEECchHhhChHHHHHHHHH
Confidence 4788876655 4579999999985 45555555443
No 111
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0
Probab=66.26 E-value=7.5 Score=32.93 Aligned_cols=37 Identities=11% Similarity=0.155 Sum_probs=29.0
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEecCcchHHHhh
Q 025857 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSENQQLAID 86 (247)
Q Consensus 48 ~~~K~vWiW~-~~KevvT~ALEsG~d~~v~~~~~~e~~~~ 86 (247)
.+-+.|++|| .+++.+...++.|+|+|+... .+++++
T Consensus 194 ~~G~~v~~WTVn~~~~~~~l~~~GVdgIiTD~--P~~~~~ 231 (238)
T 3no3_A 194 VLGMTSNVWTVDDPKLMEEMIDMGVDFITTDL--PEETQK 231 (238)
T ss_dssp HTTCEEEEECCCSHHHHHHHHHHTCSEEEESC--HHHHHH
T ss_pred HCCCEEEEECCCCHHHHHHHHHcCCCEEECCC--HHHHHH
Confidence 4567899999 578999999999999999743 444443
No 112
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=66.21 E-value=4.3 Score=34.67 Aligned_cols=109 Identities=11% Similarity=0.117 Sum_probs=53.0
Q ss_pred HHHHHhCCcEEEecCcchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEec-ChhhHhhhccccCCCCeEEEec--
Q 025857 64 TAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENIVIDL-- 140 (247)
Q Consensus 64 T~ALEsG~d~~v~~~~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~-~~e~le~a~~~~~~~~~vVv~~-- 140 (247)
..|.+.|+|++++++...+..+++-+. .+..|.....++... +.+.++.+..... +++.+..
T Consensus 112 ~~a~~aGadgv~v~d~~~~~~~~~~~~-------------~~~~g~~~i~~~a~~t~~e~~~~~~~~~~--g~v~~~s~~ 176 (262)
T 1rd5_A 112 AKMKEAGVHGLIVPDLPYVAAHSLWSE-------------AKNNNLELVLLTTPAIPEDRMKEITKASE--GFVYLVSVN 176 (262)
T ss_dssp HHHHHTTCCEEECTTCBTTTHHHHHHH-------------HHHTTCEECEEECTTSCHHHHHHHHHHCC--SCEEEECSS
T ss_pred HHHHHcCCCEEEEcCCChhhHHHHHHH-------------HHHcCCceEEEECCCCCHHHHHHHHhcCC--CeEEEecCC
Confidence 349999999999875322222221100 111222222233322 2344444443332 4554432
Q ss_pred --CCC--eeec-hhhhhhcccC-CCceEE--EEcCCHHHHHHHHHHhhcccCeEEEec
Q 025857 141 --PDW--QVIP-AENIVASFQG-SGKTVF--AISKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 141 --~DW--tiIP-lENlIA~~q~-~~~~li--a~v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
++- ...| ...+|+++.+ .+..|+ ..+++.+.++. +++.|+|||++-+
T Consensus 177 G~tG~~~~~~~~~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~---~~~~GAdgvvVGS 231 (262)
T 1rd5_A 177 GVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQ---IAQWGADGVIIGS 231 (262)
T ss_dssp CCBCTTSCBCTHHHHHHHHHHHHCSSCEEEESCCCSHHHHHH---HHHTTCSEEEECH
T ss_pred CCCCCCcCCCchHHHHHHHHHhhcCCeEEEECCcCCHHHHHH---HHHcCCCEEEECh
Confidence 121 2222 4456666542 123333 33467777766 5668999999875
No 113
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=65.96 E-value=20 Score=31.87 Aligned_cols=52 Identities=12% Similarity=0.224 Sum_probs=38.8
Q ss_pred CCCCeEEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 025857 131 GQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 131 ~~~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
...+.|.+.+.. |. .++.+++..+..++..+.+.++|+.+ .+.|+|+|++..
T Consensus 87 ~g~d~V~~~~g~----p~-~~i~~l~~~g~~v~~~v~~~~~a~~~---~~~GaD~i~v~g 138 (332)
T 2z6i_A 87 EGVKVVTTGAGN----PS-KYMERFHEAGIIVIPVVPSVALAKRM---EKIGADAVIAEG 138 (332)
T ss_dssp TTCSEEEECSSC----GG-GTHHHHHHTTCEEEEEESSHHHHHHH---HHTTCSCEEEEC
T ss_pred CCCCEEEECCCC----hH-HHHHHHHHcCCeEEEEeCCHHHHHHH---HHcCCCEEEEEC
Confidence 357887777753 54 35666666677899999999998764 468999999964
No 114
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=65.90 E-value=24 Score=32.88 Aligned_cols=111 Identities=14% Similarity=0.122 Sum_probs=64.3
Q ss_pred CchhHHHHHHHhCCcEEEecCc------chHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccC
Q 025857 58 ESKQVMTAAVERGWNTFVFLSE------NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG 131 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~~------~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~ 131 (247)
...+.+..+++.|++.+.+... ..+.++++.+. .| +.++. ...+.+.++.+.+.. .
T Consensus 237 ~~~~~a~~l~~aGvd~v~i~~~~G~~~~~~e~i~~i~~~---~p------------~~pvi-~g~~~t~e~a~~l~~--~ 298 (494)
T 1vrd_A 237 ETMERVEKLVKAGVDVIVIDTAHGHSRRVIETLEMIKAD---YP------------DLPVV-AGNVATPEGTEALIK--A 298 (494)
T ss_dssp THHHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHH---CT------------TSCEE-EEEECSHHHHHHHHH--T
T ss_pred hHHHHHHHHHHhCCCEEEEEecCCchHHHHHHHHHHHHH---CC------------CceEE-eCCcCCHHHHHHHHH--c
Confidence 3477888999999999886321 12222222111 01 11211 134667777655553 3
Q ss_pred CCCeEEEec-----------CCCeeec----hhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 025857 132 QAENIVIDL-----------PDWQVIP----AENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 132 ~~~~vVv~~-----------~DWtiIP----lENlIA~~q~~~~~lia--~v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
.++.+++.. .+|. +| +..+.+.++..+..||+ .+.+.+++..++ ..|+|+|.+-.
T Consensus 299 G~d~I~v~~~~G~~~~~~~~~~~g-~p~~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kal---a~GAd~V~iGr 370 (494)
T 1vrd_A 299 GADAVKVGVGPGSICTTRVVAGVG-VPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKAL---AAGAESVMVGS 370 (494)
T ss_dssp TCSEEEECSSCSTTCHHHHHHCCC-CCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHH---HTTCSEEEESH
T ss_pred CCCEEEEcCCCCccccccccCCCC-ccHHHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHH---HcCCCEEEECH
Confidence 588888732 1232 33 23333333344667888 778999887766 46999999764
No 115
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A
Probab=65.79 E-value=57 Score=28.24 Aligned_cols=82 Identities=18% Similarity=0.077 Sum_probs=50.2
Q ss_pred ChhhHhhhcccc--CCCCeEEEecCCCeeechhh---hhhcccCCCceEEEEcC--CHHHHHHHH-HHhhcccCeEEE--
Q 025857 119 TPQELQQLQPAD--GQAENIVIDLPDWQVIPAEN---IVASFQGSGKTVFAISK--TPSEAQIFL-EALEQGLGGIVL-- 188 (247)
Q Consensus 119 ~~e~le~a~~~~--~~~~~vVv~~~DWtiIPlEN---lIA~~q~~~~~lia~v~--~~~EA~val-~~LE~G~DGVll-- 188 (247)
+++.+..++... ..+||+-+.+. ..+|. +.+.....+.+.+..++ +.+++...+ .+++.|++|+..
T Consensus 157 s~~~i~~a~~~a~~~GAD~vkt~~~----~~~e~~~~~~~~~~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~Gvsvgr 232 (263)
T 1w8s_A 157 APEIVAYAARIALELGADAMKIKYT----GDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGR 232 (263)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECC----SSHHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCC----CCHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEeh
Confidence 566666654333 35899888863 13344 33333222566666677 899988555 788999999965
Q ss_pred ---ecCCHH-HHHHHHHhhc
Q 025857 189 ---KVEDVK-AVLALKEYFD 204 (247)
Q Consensus 189 ---~~~d~~-ev~~l~~~~~ 204 (247)
..+||. .+++|++++.
T Consensus 233 aI~~~~dp~~~~~~l~~~v~ 252 (263)
T 1w8s_A 233 NVWQRRDALKFARALAELVY 252 (263)
T ss_dssp HHHTSTTHHHHHHHHHHHHC
T ss_pred hhcCCcCHHHHHHHHHHHHh
Confidence 456654 3445555543
No 116
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Probab=65.62 E-value=7.8 Score=33.00 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=29.0
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEecCcchHHHhh
Q 025857 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSENQQLAID 86 (247)
Q Consensus 48 ~~~K~vWiW~-~~KevvT~ALEsG~d~~v~~~~~~e~~~~ 86 (247)
.+-+.|++|| .+++.+...++.|+|+|+... .+++++
T Consensus 202 ~~G~~V~~WTvn~~~~~~~l~~~GVDgIiTD~--P~~~~~ 239 (250)
T 3ks6_A 202 AAGLDFGCWAAHTPSQITKALDLGVKVFTTDR--PTLAIA 239 (250)
T ss_dssp HTTCEEEEECCCSHHHHHHHHHHTCSEEEESC--HHHHHH
T ss_pred HCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCC--HHHHHH
Confidence 4567899999 578999999999999999743 444443
No 117
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=65.16 E-value=5.9 Score=29.03 Aligned_cols=67 Identities=13% Similarity=0.118 Sum_probs=38.4
Q ss_pred CCCeEEEecCCCeeechhhhhhcccCC-CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQGS-GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~~-~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~ 200 (247)
..+.++++..-.. ..--.++..++.. ...++...... +...+..+++.|++|++.+|-+++++.+.-
T Consensus 48 ~~dlvllD~~l~~-~~g~~l~~~l~~~~~~~ii~ls~~~-~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l 115 (136)
T 2qzj_A 48 KYDLIFLEIILSD-GDGWTLCKKIRNVTTCPIVYMTYIN-EDQSILNALNSGGDDYLIKPLNLEILYAKV 115 (136)
T ss_dssp CCSEEEEESEETT-EEHHHHHHHHHTTCCCCEEEEESCC-CHHHHHHHHHTTCCEEEESSCCHHHHHHHH
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHccCCCCCEEEEEcCC-CHHHHHHHHHcCCcEEEECCCCHHHHHHHH
Confidence 3566666543211 1112234443322 34555554432 334567888999999999999998776543
No 118
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A*
Probab=65.03 E-value=4.8 Score=40.07 Aligned_cols=135 Identities=12% Similarity=0.196 Sum_probs=84.8
Q ss_pred CchhHHHHHHHhCCcEEEecC-cchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeE
Q 025857 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~-~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~v 136 (247)
.|++-+.-|+|.|+|.|.++- ..++.++++.+ ++...|..+..+..|++++.++.+.+.....|-+
T Consensus 194 kD~~dl~f~~~~~vD~Ia~SFVr~a~Dv~~~r~-------------~l~~~~~~i~IiaKIE~~eav~nldeIl~~sDGI 260 (606)
T 3t05_A 194 KDAEDIRFGIKENVDFIAASFVRRPSDVLEIRE-------------ILEEQKANISVFPKIENQEGIDNIEEILEVSDGL 260 (606)
T ss_dssp HHHHHHHHHHHTTCSEEEETTCCSHHHHHHHHH-------------HHHHTTCCCEEEECCCSHHHHHTHHHHHHHCSCE
T ss_pred hHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHH-------------HHHhcCCCCeEEEEeCCHHHHHhHHHHHHhCCEE
Confidence 468889999999999776531 22444444322 2233345677899999999988886666667887
Q ss_pred EEecCCCe-eechhhh-------hhcccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC-----
Q 025857 137 VIDLPDWQ-VIPAENI-------VASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED----- 192 (247)
Q Consensus 137 Vv~~~DWt-iIPlENl-------IA~~q~~~~~lia~-----------v~~~~EA~val~~LE~G~DGVll~~~d----- 192 (247)
+|-..|-- =||+|.+ |.+....+.-++.. ..+-.|+--...+.--|+|+|+|..+.
T Consensus 261 mVARGDLgvei~~e~vp~~Qk~ii~~~~~~gkpvi~ATQMLeSMi~~p~PTRAEvsDVanAv~dGaDavMLSgETA~G~y 340 (606)
T 3t05_A 261 MVARGDMGVEIPPEKVPMVQKDLIRQCNKLGKPVITATQMLDSMQRNPRATRAEASDVANAIYDGTDAVMLSGETAAGLY 340 (606)
T ss_dssp EEEHHHHHHHSCGGGHHHHHHHHHHHHHHHTCCEEEESSSSGGGTTCSSCCHHHHHHHHHHHHHTCSEEEECHHHHSCSC
T ss_pred EEccccccCcCCHHHHHHHHHHHHHHHHHcCCCeEEehHHHHHhhcCCCccHHHHHHHHHHHHcCCCEEEecccccCCCC
Confidence 77533322 1455553 33332323233431 236677777888899999999999543
Q ss_pred -HHHHHHHHHhhcc
Q 025857 193 -VKAVLALKEYFDG 205 (247)
Q Consensus 193 -~~ev~~l~~~~~~ 205 (247)
.+.|+-+.+++.+
T Consensus 341 PveaV~~m~~I~~~ 354 (606)
T 3t05_A 341 PEEAVKTMRNIAVS 354 (606)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 4566666665543
No 119
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=64.75 E-value=13 Score=34.98 Aligned_cols=74 Identities=19% Similarity=0.243 Sum_probs=43.3
Q ss_pred EEEEEEecChhhHhhhccccCCCCeEEEecCCCeeechhhhhhcccCC-CceEEE-EcCCHHHHHHHHHHhhcccCeEEE
Q 025857 111 VGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGS-GKTVFA-ISKTPSEAQIFLEALEQGLGGIVL 188 (247)
Q Consensus 111 va~~~~I~~~e~le~a~~~~~~~~~vVv~~~DWtiIPlENlIA~~q~~-~~~lia-~v~~~~EA~val~~LE~G~DGVll 188 (247)
++.-+-+.+.+.++.+.. ..++.++++...-.--.+.++|..+... +..|++ .+.+.++|+.+. +.|+|+|++
T Consensus 137 v~~~v~~~~~e~~~~lve--aGvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~---~aGAD~I~v 211 (400)
T 3ffs_A 137 VGAAIGVNEIERAKLLVE--AGVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELI---ENGADGIKV 211 (400)
T ss_dssp CEEEECCC-CHHHHHHHH--HTCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHH---HTTCSEEEE
T ss_pred EEeecCCCHHHHHHHHHH--cCCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHH---HcCCCEEEE
Confidence 445444544333333332 3578887754421111224555555443 667775 899999998765 679999999
Q ss_pred e
Q 025857 189 K 189 (247)
Q Consensus 189 ~ 189 (247)
.
T Consensus 212 G 212 (400)
T 3ffs_A 212 G 212 (400)
T ss_dssp C
T ss_pred e
Confidence 3
No 120
>1xx1_A Smase I, sphingomyelinase I; structure, quick cryo-soaking, activity, smase D, hydrolase; HET: EPE; 1.75A {Loxosceles laeta} PDB: 2f9r_A*
Probab=64.73 E-value=13 Score=31.85 Aligned_cols=47 Identities=17% Similarity=0.271 Sum_probs=32.8
Q ss_pred hhhhhcccCCCc--eEEEE-cCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 025857 149 ENIVASFQGSGK--TVFAI-SKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (247)
Q Consensus 149 ENlIA~~q~~~~--~lia~-v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~ 200 (247)
+.++.+++..+- ++++- +++.++++.+ ++.|+|||+ |+.|+.+.++.
T Consensus 212 ~~~v~~~~~~Glg~~V~~WTvn~~~~~~~l---~~~GVDgIi--TD~P~~~~~~l 261 (285)
T 1xx1_A 212 EAIKSRDSANGFINKIYYWSVDKVSTTKAA---LDVGVDGIM--TNYPNVLIGVL 261 (285)
T ss_dssp HHHHHHTSTTCCCCEEEEECCCSHHHHHHH---HHHTCSEEE--ESCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEeeCCCHHHHHHH---HhcCCCEEE--eCCHHHHHHHH
Confidence 456666665554 66554 6888887766 578999998 78898665443
No 121
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=64.73 E-value=39 Score=24.79 Aligned_cols=68 Identities=12% Similarity=0.200 Sum_probs=39.3
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~----~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
..+.++++..-.. +.--.++..++. .+..++......+ ...+..+++.|++|.+.+|-+++++.+.-+
T Consensus 61 ~~dlillD~~lp~-~~g~~l~~~l~~~~~~~~~piiils~~~~-~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~ 132 (149)
T 1i3c_A 61 RPNLILLDLNLPK-KDGREVLAEIKQNPDLKRIPVVVLTTSHN-EDDVIASYELHVNCYLTKSRNLKDLFKMVQ 132 (149)
T ss_dssp CCSEEEECSCCSS-SCHHHHHHHHHHCTTTTTSCEEEEESCCC-HHHHHHHHHTTCSEEEECCSSHHHHHHHHH
T ss_pred CCCEEEEeCCCCC-CcHHHHHHHHHhCcCcCCCeEEEEECCCC-hHHHHHHHHcCCcEEEECCCCHHHHHHHHH
Confidence 4566666543221 122233333332 2345665554332 234567889999999999999987765433
No 122
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=64.18 E-value=37 Score=24.96 Aligned_cols=66 Identities=8% Similarity=0.098 Sum_probs=40.2
Q ss_pred CCCeEEEecCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q--~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l 199 (247)
..+.+|++..-.. ..--.++..+. ..+..++..... .+......+++.|+++++.+|-++.++...
T Consensus 47 ~~dliild~~l~~-~~g~~~~~~l~~~~~~~pii~ls~~-~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~ 114 (155)
T 1qkk_A 47 FAGIVISDIRMPG-MDGLALFRKILALDPDLPMILVTGH-GDIPMAVQAIQDGAYDFIAKPFAADRLVQS 114 (155)
T ss_dssp CCSEEEEESCCSS-SCHHHHHHHHHHHCTTSCEEEEECG-GGHHHHHHHHHTTCCEEEESSCCHHHHHHH
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCCEEEEECC-CChHHHHHHHhcCCCeEEeCCCCHHHHHHH
Confidence 4577777654322 22222333322 234556665544 334566788999999999999998876544
No 123
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=63.78 E-value=32 Score=28.44 Aligned_cols=110 Identities=12% Similarity=0.014 Sum_probs=0.0
Q ss_pred chhHHHHHHHhCCcEEEecC---cchHHHhhc------cceeEEeeeeecCCceecCCCCeEEE-------EEEecChhh
Q 025857 59 SKQVMTAAVERGWNTFVFLS---ENQQLAIDW------STIALLDPLFIKEGEVYDSGDRRVGS-------IIEVSTPQE 122 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~~---~~~e~~~~l------g~i~~i~pl~i~~g~~~~~~g~~va~-------~~~I~~~e~ 122 (247)
+.+.+..|++.|+|++++.. ++.+..+++ .++.+--. . .+.+.+..+
T Consensus 86 ~~~~~~~~~~~Gad~V~lg~~~l~~p~~~~~~~~~~~~~~i~~~~~-----------------~~~~~g~~~v~~~g~~~ 148 (252)
T 1ka9_F 86 SLEDARKLLLSGADKVSVNSAAVRRPELIRELADHFGAQAVVLAID-----------------ARWRGDFPEVHVAGGRV 148 (252)
T ss_dssp SHHHHHHHHHHTCSEEEECHHHHHCTHHHHHHHHHHCGGGEEEEEE-----------------EEEETTEEEEEETTTTE
T ss_pred CHHHHHHHHHcCCCEEEEChHHHhCcHHHHHHHHHcCCCcEEEEEE-----------------EecCCCCEEEEECCCcc
Q ss_pred ------HhhhccccCC-CCeEEEecCCCeeec----hhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEE
Q 025857 123 ------LQQLQPADGQ-AENIVIDLPDWQVIP----AENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVL 188 (247)
Q Consensus 123 ------le~a~~~~~~-~~~vVv~~~DWtiIP----lENlIA~~q~~~~~lia--~v~~~~EA~val~~LE~G~DGVll 188 (247)
++.+...... ++.+++...+-+--+ +|.+-.-.+..+..+++ .++++++++.++ +.|+|||++
T Consensus 149 ~~~~~~~e~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~---~~Gadgv~v 224 (252)
T 1ka9_F 149 PTGLHAVEWAVKGVELGAGEILLTSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAF---QAGAEAALA 224 (252)
T ss_dssp EEEEEHHHHHHHHHHHTCCEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHH---HTTCSEEEE
T ss_pred ccCCcHHHHHHHHHHcCCCEEEEecccCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHH---HCCCHHHHH
No 124
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=62.60 E-value=42 Score=26.36 Aligned_cols=20 Identities=15% Similarity=0.380 Sum_probs=17.3
Q ss_pred chhHHHHHHHhCCcEEEecC
Q 025857 59 SKQVMTAAVERGWNTFVFLS 78 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~~ 78 (247)
..+.+..|++.|++.++..+
T Consensus 64 ~~~~~~~~~~~Ga~~~l~kp 83 (237)
T 3cwo_X 64 QQAMVIEAIKAGAKDFIVNT 83 (237)
T ss_dssp THHHHHHHHHTTCCEEEESH
T ss_pred CHHHHHHHHHCCHHheEeCC
Confidence 47888999999999999764
No 125
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=62.24 E-value=12 Score=26.64 Aligned_cols=68 Identities=18% Similarity=0.264 Sum_probs=36.1
Q ss_pred CCCeEEEecCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC-CHHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE-DVKAVLALKE 201 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q--~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~-d~~ev~~l~~ 201 (247)
..+-++++..-... .--.++..+. ..+..++...... +......+++.|+++++.+|- +++++.+.-+
T Consensus 51 ~~dlvi~d~~l~~~-~g~~~~~~l~~~~~~~~ii~~t~~~-~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~ 121 (130)
T 3eod_A 51 TPDLMICDIAMPRM-NGLKLLEHIRNRGDQTPVLVISATE-NMADIAKALRLGVEDVLLKPVKDLNRLREMVF 121 (130)
T ss_dssp CCSEEEECCC------CHHHHHHHHHTTCCCCEEEEECCC-CHHHHHHHHHHCCSEEEESCC---CHHHHHHH
T ss_pred CCCEEEEecCCCCC-CHHHHHHHHHhcCCCCCEEEEEcCC-CHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHH
Confidence 45676766432211 1112233222 2345566555443 334456788999999999998 8886655443
No 126
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=62.19 E-value=28 Score=28.11 Aligned_cols=71 Identities=8% Similarity=0.048 Sum_probs=42.1
Q ss_pred CCCeEEEecCCCeeechhhhhhcccCCCceEEEEcCCHHH-HHHHHHHhhcccCeEEEecC---------CHHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSE-AQIFLEALEQGLGGIVLKVE---------DVKAVLALKE 201 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~E-A~val~~LE~G~DGVll~~~---------d~~ev~~l~~ 201 (247)
.++.+++...... =-++.++..++..+.+++..+.++.+ .+.+..+++.|+|.|.+.+. +++.++++++
T Consensus 77 Gad~v~v~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~~g~d~i~v~~g~~g~~~~~~~~~~i~~l~~ 155 (211)
T 3f4w_A 77 GADYVTVLGVTDV-LTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAGADMLAVHTGTDQQAAGRKPIDDLITMLK 155 (211)
T ss_dssp TCSEEEEETTSCH-HHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHHTCCEEEEECCHHHHHTTCCSHHHHHHHHH
T ss_pred CCCEEEEeCCCCh-hHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHcCCCEEEEcCCCcccccCCCCHHHHHHHHH
Confidence 5788888765310 01355666665555666654322222 23456677899999887653 5666666666
Q ss_pred hh
Q 025857 202 YF 203 (247)
Q Consensus 202 ~~ 203 (247)
.+
T Consensus 156 ~~ 157 (211)
T 3f4w_A 156 VR 157 (211)
T ss_dssp HC
T ss_pred Hc
Confidence 53
No 127
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=62.12 E-value=7.2 Score=27.20 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=27.9
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 025857 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (247)
Q Consensus 159 ~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l 199 (247)
...++......+ ......+++.|+++.+.+|-+++++.+.
T Consensus 72 ~~~ii~~s~~~~-~~~~~~~~~~g~~~~l~Kp~~~~~l~~~ 111 (121)
T 1zh2_A 72 AVPVIVLSARSE-ESDKIAALDAGADDYLSKPFGIGELQAR 111 (121)
T ss_dssp CCCEEEEESCCS-HHHHHHHHHHTCSEEEESSCCHHHHHHH
T ss_pred CCcEEEEECCCC-HHHHHHHHhcCCCeEEeCCcCHHHHHHH
Confidence 345555554333 3345678899999999999999977543
No 128
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=62.06 E-value=19 Score=29.88 Aligned_cols=27 Identities=15% Similarity=0.190 Sum_probs=20.1
Q ss_pred EEEEEe--CchhHHHHHHHhCCcEEEecC
Q 025857 52 RVWIWT--ESKQVMTAAVERGWNTFVFLS 78 (247)
Q Consensus 52 ~vWiW~--~~KevvT~ALEsG~d~~v~~~ 78 (247)
.+++=- .+.+.+..+++.|+|.+++..
T Consensus 77 pv~v~ggI~~~~~~~~~l~~Gad~V~lg~ 105 (244)
T 1vzw_A 77 KVELSGGIRDDDTLAAALATGCTRVNLGT 105 (244)
T ss_dssp EEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred cEEEECCcCCHHHHHHHHHcCCCEEEECc
Confidence 366532 356779999999999999854
No 129
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=61.93 E-value=8.1 Score=32.04 Aligned_cols=28 Identities=7% Similarity=-0.086 Sum_probs=21.1
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 025857 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 159 ~~~lia~v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
+.-+...+.|.+|++.+ . .|+|.|.+.|
T Consensus 88 ~~~ig~s~~t~~e~~~A---~-~GaDyv~~g~ 115 (210)
T 3ceu_A 88 AGHVSCSCHSVEEVKNR---K-HFYDYVFMSP 115 (210)
T ss_dssp CSEEEEEECSHHHHHTT---G-GGSSEEEECC
T ss_pred CCEEEEecCCHHHHHHH---h-hCCCEEEECC
Confidence 44567778999998776 3 6999998643
No 130
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=61.75 E-value=3.4 Score=30.33 Aligned_cols=68 Identities=12% Similarity=0.111 Sum_probs=39.4
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~-~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~ 200 (247)
..+.+|++..-..-..--.++..++. .+..+|......+. .....+++.|+++++.+|-+++++.+.-
T Consensus 50 ~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~-~~~~~~~~~g~~~~l~KP~~~~~l~~~i 118 (140)
T 3h5i_A 50 YPDLILMDIELGEGMDGVQTALAIQQISELPVVFLTAHTEP-AVVEKIRSVTAYGYVMKSATEQVLITIV 118 (140)
T ss_dssp CCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEEESSSSC-CCCGGGGGSCEEEEEETTCCHHHHHHHH
T ss_pred CCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEEECCCCH-HHHHHHHhCCCcEEEeCCCCHHHHHHHH
Confidence 46777776542211111223332221 34556665554332 3456788999999999999998776543
No 131
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=61.59 E-value=6.1 Score=33.65 Aligned_cols=50 Identities=18% Similarity=0.212 Sum_probs=33.6
Q ss_pred CeeechhhhhhcccCCCceEEEE-cCCHHHHHHHHHHhhcccCeEEEecCCHHHHHH
Q 025857 143 WQVIPAENIVASFQGSGKTVFAI-SKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (247)
Q Consensus 143 WtiIPlENlIA~~q~~~~~lia~-v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~ 198 (247)
+..+. +.+|+.++..+.++++- +++.++++. .++.|+|||+ ||+|+.+.+
T Consensus 195 ~~~~~-~~~v~~~~~~G~~v~~WTvn~~~~~~~---l~~~GVdgIi--TD~P~~~~~ 245 (252)
T 3qvq_A 195 QSFFD-VQQVSDIKAAGYKVLAFTINDESLALK---LYNQGLDAVF--SDYPQKIQS 245 (252)
T ss_dssp GGGCC-HHHHHHHHHTTCEEEEECCCCHHHHHH---HHHTTCCEEE--ESSHHHHHH
T ss_pred hhhCC-HHHHHHHHHCCCEEEEEcCCCHHHHHH---HHHcCCCEEE--eCCHHHHHH
Confidence 33443 35677777666666654 577776655 4578999998 888985543
No 132
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=61.13 E-value=7.3 Score=27.79 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=25.6
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHH
Q 025857 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (247)
Q Consensus 160 ~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~ 198 (247)
..++......+ ......+++.|+++.+.+|-+++++.+
T Consensus 74 ~~ii~~t~~~~-~~~~~~~~~~ga~~~l~KP~~~~~l~~ 111 (120)
T 3f6p_A 74 MPIIMLTAKDS-EIDKVIGLEIGADDYVTKPFSTRELLA 111 (120)
T ss_dssp SCEEEEEESSC-HHHHHHHHHTTCCEEEEESCCHHHHHH
T ss_pred CCEEEEECCCC-hHHHHHHHhCCcceeEcCCCCHHHHHH
Confidence 44454443222 233456789999999999999987654
No 133
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=61.11 E-value=32 Score=24.19 Aligned_cols=67 Identities=7% Similarity=0.128 Sum_probs=40.2
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~----~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~ 200 (247)
..+.++++..-+. ..-..++..++. .+..++..... .+......+++.|+++.+.+|-+++++.+.-
T Consensus 51 ~~dlvl~D~~l~~-~~g~~~~~~l~~~~~~~~~~ii~~s~~-~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i 121 (129)
T 1p6q_A 51 PHHLVISDFNMPK-MDGLGLLQAVRANPATKKAAFIILTAQ-GDRALVQKAAALGANNVLAKPFTIEKMKAAI 121 (129)
T ss_dssp CCSEEEECSSSCS-SCHHHHHHHHTTCTTSTTCEEEECCSC-CCHHHHHHHHHHTCSCEECCCSSHHHHHHHH
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHhcCccccCCCEEEEeCC-CCHHHHHHHHHcCCCEEEECCCCHHHHHHHH
Confidence 4566666543222 122234555543 24456655443 3344566788999999999999999775443
No 134
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=60.87 E-value=27 Score=24.90 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=30.0
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 159 ~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
+..++..... .+......+++.|+++++.+|-++.++.+.-+
T Consensus 80 ~~~ii~ls~~-~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~ 121 (140)
T 2qr3_A 80 DLPVVLFTAY-ADIDLAVRGIKEGASDFVVKPWDNQKLLETLL 121 (140)
T ss_dssp TCCEEEEEEG-GGHHHHHHHHHTTCCEEEEESCCHHHHHHHHH
T ss_pred CCCEEEEECC-CCHHHHHHHHHcCchheeeCCCCHHHHHHHHH
Confidence 4556655543 33556678889999999999999987754433
No 135
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=60.80 E-value=22 Score=25.53 Aligned_cols=40 Identities=15% Similarity=0.050 Sum_probs=28.2
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 025857 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (247)
Q Consensus 159 ~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l 199 (247)
+..++...... +......+++.|+++++.+|-+++++...
T Consensus 87 ~~~ii~~s~~~-~~~~~~~~~~~g~~~~l~KP~~~~~L~~~ 126 (135)
T 3snk_A 87 TVPLIAVSDEL-TSEQTRVLVRMNASDWLHKPLDGKELLNA 126 (135)
T ss_dssp TCCEEEEESCC-CHHHHHHHHHTTCSEEEESSCCHHHHHHH
T ss_pred CCcEEEEeCCC-CHHHHHHHHHcCcHhhccCCCCHHHHHHH
Confidence 45566555433 33455678899999999999999976543
No 136
>1xx1_A Smase I, sphingomyelinase I; structure, quick cryo-soaking, activity, smase D, hydrolase; HET: EPE; 1.75A {Loxosceles laeta} PDB: 2f9r_A*
Probab=60.62 E-value=9.9 Score=32.56 Aligned_cols=29 Identities=14% Similarity=0.351 Sum_probs=25.0
Q ss_pred CCcEEEEEe-CchhHHHHHHHhCCcEEEec
Q 025857 49 KPKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (247)
Q Consensus 49 ~~K~vWiW~-~~KevvT~ALEsG~d~~v~~ 77 (247)
..|.|.+|| .+++.+...++.|+|+|+..
T Consensus 223 lg~~V~~WTvn~~~~~~~l~~~GVDgIiTD 252 (285)
T 1xx1_A 223 FINKIYYWSVDKVSTTKAALDVGVDGIMTN 252 (285)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHTCSEEEES
T ss_pred CCCeEEEeeCCCHHHHHHHHhcCCCEEEeC
Confidence 345899999 67889999999999999974
No 137
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=60.38 E-value=34 Score=24.35 Aligned_cols=40 Identities=13% Similarity=0.165 Sum_probs=28.6
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 025857 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (247)
Q Consensus 159 ~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l 199 (247)
+..++......+ ......+++.|+++.+.+|-+++++.+.
T Consensus 81 ~~pii~~s~~~~-~~~~~~~~~~g~~~~l~KP~~~~~L~~~ 120 (129)
T 3h1g_A 81 EIPIIMITAEGG-KAEVITALKAGVNNYIVKPFTPQVLKEK 120 (129)
T ss_dssp TCCEEEEESCCS-HHHHHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred CCeEEEEeCCCC-hHHHHHHHHcCccEEEeCCCCHHHHHHH
Confidence 445666554433 3445678899999999999999977644
No 138
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=60.21 E-value=8.5 Score=32.13 Aligned_cols=19 Identities=11% Similarity=0.312 Sum_probs=17.2
Q ss_pred hhHHHHHHHhCCcEEEecC
Q 025857 60 KQVMTAAVERGWNTFVFLS 78 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~ 78 (247)
.+.+..+++.|+|.++++.
T Consensus 98 ~~~~~~~~~~Gad~v~~~~ 116 (248)
T 1geq_A 98 RNFLAEAKASGVDGILVVD 116 (248)
T ss_dssp HHHHHHHHHHTCCEEEETT
T ss_pred HHHHHHHHHCCCCEEEECC
Confidence 5899999999999999975
No 139
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0
Probab=59.93 E-value=6.1 Score=33.50 Aligned_cols=46 Identities=13% Similarity=0.115 Sum_probs=31.9
Q ss_pred hhhhhcccCCCceEEEE-cCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 025857 149 ENIVASFQGSGKTVFAI-SKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (247)
Q Consensus 149 ENlIA~~q~~~~~lia~-v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l 199 (247)
..+|++++..+.++++- +++.++++.+ ++.|+|||+ ||+|..+.++
T Consensus 186 ~~~v~~~~~~G~~v~~WTVn~~~~~~~l---~~~GVdgIi--TD~P~~~~~~ 232 (238)
T 3no3_A 186 PDWVKDCKVLGMTSNVWTVDDPKLMEEM---IDMGVDFIT--TDLPEETQKI 232 (238)
T ss_dssp TTHHHHHHHTTCEEEEECCCSHHHHHHH---HHHTCSEEE--ESCHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEECCCCHHHHHHH---HHcCCCEEE--CCCHHHHHHH
Confidence 35677777666666554 5777766654 578999988 7899965443
No 140
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=59.90 E-value=39 Score=25.48 Aligned_cols=33 Identities=27% Similarity=0.319 Sum_probs=24.7
Q ss_pred ceEEEEcCC-HHHHHHHHHHhhcccCeEEEecCC
Q 025857 160 KTVFAISKT-PSEAQIFLEALEQGLGGIVLKVED 192 (247)
Q Consensus 160 ~~lia~v~~-~~EA~val~~LE~G~DGVll~~~d 192 (247)
..++..... .++.+....+++.|+++++.+|-+
T Consensus 99 ~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~ 132 (164)
T 3t8y_A 99 TRVIMVSSLTEEGAAITIEALRNGAVDFITKPHG 132 (164)
T ss_dssp CEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSS
T ss_pred ceEEEEecCCccchHHHHHHHHcCcCEEEeCCCC
Confidence 455555543 333567778999999999999998
No 141
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=59.89 E-value=18 Score=33.66 Aligned_cols=113 Identities=16% Similarity=0.148 Sum_probs=63.2
Q ss_pred CchhHHHHHHHhCCcEEEecCc--ch----HHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccC
Q 025857 58 ESKQVMTAAVERGWNTFVFLSE--NQ----QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG 131 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~~--~~----e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~ 131 (247)
..++.+..+++.|+|.+++... |. +.++++.+.- | +..+. -..+.+.+....+.. .
T Consensus 233 ~~~~~a~~l~~~G~d~ivi~~a~g~~~~~~~~i~~l~~~~---p------------~~pvi-~G~v~t~~~a~~~~~--~ 294 (491)
T 1zfj_A 233 DTFERAEALFEAGADAIVIDTAHGHSAGVLRKIAEIRAHF---P------------NRTLI-AGNIATAEGARALYD--A 294 (491)
T ss_dssp THHHHHHHHHHHTCSEEEECCSCTTCHHHHHHHHHHHHHC---S------------SSCEE-EEEECSHHHHHHHHH--T
T ss_pred hHHHHHHHHHHcCCCeEEEeeecCcchhHHHHHHHHHHHC---C------------CCcEe-CCCccCHHHHHHHHH--c
Confidence 3478899999999999987531 11 1222221100 1 11111 334556666555543 3
Q ss_pred CCCeEEEec-----------CCCeeech---hhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 132 QAENIVIDL-----------PDWQVIPA---ENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 132 ~~~~vVv~~-----------~DWtiIPl---ENlIA~~q~~~~~lia--~v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
.++.+.+.. .+|..-.+ ..+.++.+..+..||+ .+++.+++..++ +.|+|+|++-.-
T Consensus 295 Gad~I~vg~g~g~~~~tr~~~~~~~p~~~~l~~~~~~~~~~~ipvia~GGi~~~~di~kal---~~GA~~v~vG~~ 367 (491)
T 1zfj_A 295 GVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKAL---AAGGNAVMLGSM 367 (491)
T ss_dssp TCSEEEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHH---HTTCSEEEESTT
T ss_pred CCCEEEECccCCcceEEeeecCCCCCcHHHHHHHHHHHhhcCCCEEeeCCCCCHHHHHHHH---HcCCcceeeCHH
Confidence 467766631 24433223 3333332334567888 678999988776 459999998543
No 142
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=59.44 E-value=25 Score=24.88 Aligned_cols=65 Identities=15% Similarity=0.218 Sum_probs=38.2
Q ss_pred CCCeEEEecCCCeeechhhhhhcccCC----CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQGS----GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~~----~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l 199 (247)
..+.++++..-.. ..--.++..+... ...|+.......+ ....+++.|+++++.+|-++.++.+.
T Consensus 50 ~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~~~~ii~~~~~~~~--~~~~~~~~g~~~~l~kP~~~~~l~~~ 118 (132)
T 3lte_A 50 EPAIMTLDLSMPK-LDGLDVIRSLRQNKVANQPKILVVSGLDKA--KLQQAVTEGADDYLEKPFDNDALLDR 118 (132)
T ss_dssp CCSEEEEESCBTT-BCHHHHHHHHHTTTCSSCCEEEEECCSCSH--HHHHHHHHTCCEEECSSCCHHHHHHH
T ss_pred CCCEEEEecCCCC-CCHHHHHHHHHhcCccCCCeEEEEeCCChH--HHHHHHHhChHHHhhCCCCHHHHHHH
Confidence 4677777654222 1222344444332 2344444433333 56688999999999999999876543
No 143
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=59.26 E-value=27 Score=25.58 Aligned_cols=42 Identities=10% Similarity=0.077 Sum_probs=28.8
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 159 ~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
+..++......+ ......+++.|+++++.+|-+++++.+.-+
T Consensus 89 ~~pii~~t~~~~-~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~ 130 (152)
T 3heb_A 89 RSPVVILTTTDD-QREIQRCYDLGANVYITKPVNYENFANAIR 130 (152)
T ss_dssp TSCEEEEESCCC-HHHHHHHHHTTCSEEEECCSSHHHHHHHHH
T ss_pred CCCEEEEecCCC-HHHHHHHHHCCCcEEEeCCCCHHHHHHHHH
Confidence 445665554433 234567889999999999999887654433
No 144
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=59.07 E-value=11 Score=33.08 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=34.9
Q ss_pred CeeechhhhhhcccCCCceEEEE-cCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 025857 143 WQVIPAENIVASFQGSGKTVFAI-SKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (247)
Q Consensus 143 WtiIPlENlIA~~q~~~~~lia~-v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l 199 (247)
|..+. +.+|++++..+-+|++- |++.++++.+ ++.|+|||+ ||.|+.+.++
T Consensus 253 ~~~~~-~~~v~~~~~~Gl~V~~WTVn~~~~~~~l---~~~GVDgIi--TD~P~~~~~~ 304 (313)
T 3l12_A 253 FLDVT-PELVAEAHDLGLIVLTWTVNEPEDIRRM---ATTGVDGIV--TDYPGRTQRI 304 (313)
T ss_dssp GGGCC-HHHHHHHHHTTCEEEEBCCCSHHHHHHH---HHHTCSEEE--ESCHHHHHHH
T ss_pred hhcCC-HHHHHHHHHCCCEEEEEcCCCHHHHHHH---HHcCCCEEE--eCCHHHHHHH
Confidence 33443 45677777766666654 5788777765 578999998 7889865443
No 145
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=58.88 E-value=6.1 Score=33.60 Aligned_cols=122 Identities=16% Similarity=0.138 Sum_probs=62.4
Q ss_pred hhHHHHHHHhCCcEEEecCc--chHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeEE
Q 025857 60 KQVMTAAVERGWNTFVFLSE--NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 137 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~~--~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vV 137 (247)
.+.+..|++.|+|++.+..+ --+...+.- ..+++.|++++..+...++.+ .+.......||+.
T Consensus 75 ~~~i~~~~~aGadgv~vh~e~~~~~~~~~~~-------------~~i~~~g~~~gv~~~p~t~~e--~~~~~~~~~D~v~ 139 (230)
T 1tqj_A 75 EKYVEDFAKAGADIISVHVEHNASPHLHRTL-------------CQIRELGKKAGAVLNPSTPLD--FLEYVLPVCDLIL 139 (230)
T ss_dssp GGTHHHHHHHTCSEEEEECSTTTCTTHHHHH-------------HHHHHTTCEEEEEECTTCCGG--GGTTTGGGCSEEE
T ss_pred HHHHHHHHHcCCCEEEECcccccchhHHHHH-------------HHHHHcCCcEEEEEeCCCcHH--HHHHHHhcCCEEE
Confidence 44789999999999988754 111111100 112345667677665555543 3333334678876
Q ss_pred EecC-----CCeeec--hhhhhhcccCC------CceEE--EEcCCHHHHHHHHHHhhcccCeEEEe-----cCCHH-HH
Q 025857 138 IDLP-----DWQVIP--AENIVASFQGS------GKTVF--AISKTPSEAQIFLEALEQGLGGIVLK-----VEDVK-AV 196 (247)
Q Consensus 138 v~~~-----DWtiIP--lENlIA~~q~~------~~~li--a~v~~~~EA~val~~LE~G~DGVll~-----~~d~~-ev 196 (247)
+-.- .-+.+| +|.| +++.+. +..|. ..++. +. +-.+.+.|+||+++- .+|+. .+
T Consensus 140 ~msv~pg~ggq~~~~~~~~~i-~~lr~~~~~~~~~~~I~v~GGI~~-~~---~~~~~~aGad~vvvGSai~~a~d~~~~~ 214 (230)
T 1tqj_A 140 IMSVNPGFGGQSFIPEVLPKI-RALRQMCDERGLDPWIEVDGGLKP-NN---TWQVLEAGANAIVAGSAVFNAPNYAEAI 214 (230)
T ss_dssp EESSCC----CCCCGGGHHHH-HHHHHHHHHHTCCCEEEEESSCCT-TT---THHHHHHTCCEEEESHHHHTSSCHHHHH
T ss_pred EEEeccccCCccCcHHHHHHH-HHHHHHHHhcCCCCcEEEECCcCH-HH---HHHHHHcCCCEEEECHHHHCCCCHHHHH
Confidence 6533 222344 4433 222211 22222 22332 33 445577899999985 34664 34
Q ss_pred HHHHH
Q 025857 197 LALKE 201 (247)
Q Consensus 197 ~~l~~ 201 (247)
++|++
T Consensus 215 ~~l~~ 219 (230)
T 1tqj_A 215 AGVRN 219 (230)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 44544
No 146
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=58.60 E-value=70 Score=26.67 Aligned_cols=70 Identities=16% Similarity=0.026 Sum_probs=33.3
Q ss_pred CCCeEEEecCC----CeeechhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEecC---CHHHHHHHHHh
Q 025857 132 QAENIVIDLPD----WQVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKVE---DVKAVLALKEY 202 (247)
Q Consensus 132 ~~~~vVv~~~D----WtiIPlENlIA~~q~~~~~lia~--v~~~~EA~val~~LE~G~DGVll~~~---d~~ev~~l~~~ 202 (247)
.++++++...+ -+-+++|.+-.-.+..+..+++. ++++++++.++ +.|+|||++-+. .+..+.+++++
T Consensus 169 G~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~---~~Gadgv~vgsal~~~~~~~~~~~~~ 245 (266)
T 2w6r_A 169 GAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAF---LAGADAALAASVFHFREIDMRELKEY 245 (266)
T ss_dssp TCSEEEEEETTTTTTCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHH---HHTCSEEEESTTTC------------
T ss_pred CCCEEEEEeecCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHH---HcCCHHHHccHHHHcCCCCHHHHHHH
Confidence 46777775321 11234444322222234456664 57889988876 469999999753 33344555665
Q ss_pred hc
Q 025857 203 FD 204 (247)
Q Consensus 203 ~~ 204 (247)
+.
T Consensus 246 l~ 247 (266)
T 2w6r_A 246 LK 247 (266)
T ss_dssp --
T ss_pred HH
Confidence 54
No 147
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=58.07 E-value=54 Score=29.05 Aligned_cols=108 Identities=9% Similarity=0.099 Sum_probs=61.6
Q ss_pred chhHHHHHHHhCCcEEEecCcc-hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeEE
Q 025857 59 SKQVMTAAVERGWNTFVFLSEN-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 137 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~~~~-~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vV 137 (247)
..+.+..++|.|++.+.+.-++ .+.++.+. ..|.+ ++..+.+.++...+.. ..+|+++
T Consensus 91 ~~~~~~~~~~~g~d~V~l~~g~p~~~~~~l~-----------------~~g~~--v~~~v~s~~~a~~a~~--~GaD~i~ 149 (326)
T 3bo9_A 91 ADDLVKVCIEEKVPVVTFGAGNPTKYIRELK-----------------ENGTK--VIPVVASDSLARMVER--AGADAVI 149 (326)
T ss_dssp HHHHHHHHHHTTCSEEEEESSCCHHHHHHHH-----------------HTTCE--EEEEESSHHHHHHHHH--TTCSCEE
T ss_pred HHHHHHHHHHCCCCEEEECCCCcHHHHHHHH-----------------HcCCc--EEEEcCCHHHHHHHHH--cCCCEEE
Confidence 3688999999999998875322 22222221 11222 3346677777666543 3588999
Q ss_pred EecC--CCe--eechhhhhhccc-CCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEec
Q 025857 138 IDLP--DWQ--VIPAENIVASFQ-GSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 138 v~~~--DWt--iIPlENlIA~~q-~~~~~lia~--v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
+... +-. -+|--+++.++. ..+..+++. ++|.+++..++. .|+|||.+-+
T Consensus 150 v~g~~~GG~~G~~~~~~ll~~i~~~~~iPviaaGGI~~~~dv~~al~---~GA~gV~vGs 206 (326)
T 3bo9_A 150 AEGMESGGHIGEVTTFVLVNKVSRSVNIPVIAAGGIADGRGMAAAFA---LGAEAVQMGT 206 (326)
T ss_dssp EECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHH---HTCSEEEESH
T ss_pred EECCCCCccCCCccHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHH---hCCCEEEech
Confidence 8652 111 122223333322 123445553 467888766654 6999999754
No 148
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=57.98 E-value=29 Score=25.45 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=39.9
Q ss_pred CCCeEEEecCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q--~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
..+.+|++..-.. ..--.++..+. .....++......+ ......+++.|++|++.+|-+++++.+.-+
T Consensus 51 ~~dlii~D~~l~~-~~g~~~~~~l~~~~~~~~ii~ls~~~~-~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~ 120 (153)
T 3cz5_A 51 TPDIVVMDLTLPG-PGGIEATRHIRQWDGAARILIFTMHQG-SAFALKAFEAGASGYVTKSSDPAELVQAIE 120 (153)
T ss_dssp CCSEEEECSCCSS-SCHHHHHHHHHHHCTTCCEEEEESCCS-HHHHHHHHHTTCSEEEETTSCTTHHHHHHH
T ss_pred CCCEEEEecCCCC-CCHHHHHHHHHHhCCCCeEEEEECCCC-HHHHHHHHHCCCcEEEecCCCHHHHHHHHH
Confidence 3566666544222 12223333332 23445666554433 445678889999999999999887655433
No 149
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=57.81 E-value=49 Score=23.63 Aligned_cols=41 Identities=27% Similarity=0.325 Sum_probs=28.9
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecC-CHHHHHHHH
Q 025857 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE-DVKAVLALK 200 (247)
Q Consensus 159 ~~~lia~v~~~~EA~val~~LE~G~DGVll~~~-d~~ev~~l~ 200 (247)
+..++......+ ......+++.|+++++.+|- ++.++.+.-
T Consensus 86 ~~~ii~ls~~~~-~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i 127 (137)
T 2pln_A 86 SIVVLVSSDNPT-SEEEVHAFEQGADDYIAKPYRSIKALVARI 127 (137)
T ss_dssp TSEEEEEESSCC-HHHHHHHHHTTCSEEEESSCSCHHHHHHHH
T ss_pred CccEEEEeCCCC-HHHHHHHHHcCCceeeeCCCCCHHHHHHHH
Confidence 455565554332 44566788999999999999 998775543
No 150
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=57.65 E-value=31 Score=27.14 Aligned_cols=69 Identities=16% Similarity=0.102 Sum_probs=41.7
Q ss_pred CCCCeEEEecCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 131 GQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 131 ~~~~~vVv~~~DWtiIPlENlIA~~q--~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
...+.++++..-+..=-+ .++..+. ..+..++......+ ......+++.|++|++.+|-+++++.+.-+
T Consensus 42 ~~~dlvllD~~lp~~~g~-~~~~~lr~~~~~~~ii~lt~~~~-~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~ 112 (220)
T 1p2f_A 42 EAFHVVVLDVMLPDYSGY-EICRMIKETRPETWVILLTLLSD-DESVLKGFEAGADDYVTKPFNPEILLARVK 112 (220)
T ss_dssp SCCSEEEEESBCSSSBHH-HHHHHHHHHCTTSEEEEEESCCS-HHHHHHHHHHTCSEEEESSCCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHH-HHHHHHHhcCCCCcEEEEEcCCC-HHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Confidence 456777776543321112 2333332 23556666654433 345567889999999999999997765443
No 151
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A
Probab=57.56 E-value=14 Score=30.68 Aligned_cols=37 Identities=11% Similarity=0.149 Sum_probs=29.0
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEecCcchHHHhh
Q 025857 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSENQQLAID 86 (247)
Q Consensus 48 ~~~K~vWiW~-~~KevvT~ALEsG~d~~v~~~~~~e~~~~ 86 (247)
.+-+.|++|+ .+++.+...++.|+|+|+.. +.+.+.+
T Consensus 184 ~~G~~v~~wtvn~~~~~~~l~~~GvdgI~TD--~p~~~~~ 221 (224)
T 1vd6_A 184 KRGLFVVAWTVNEEGEARRLLALGLDGLIGD--RPEVLLP 221 (224)
T ss_dssp HTTCEEEEECCCCHHHHHHHHHTTCSEEEES--CHHHHTT
T ss_pred HCCCEEEEEeCCCHHHHHHHHhcCCCEEEcC--CHHHHHH
Confidence 4567899999 67899999999999999874 2555443
No 152
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=57.56 E-value=22 Score=29.66 Aligned_cols=112 Identities=11% Similarity=0.094 Sum_probs=60.8
Q ss_pred CchhHHHHHHHhCCcEEEec--Cc--------chHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhH-hhh
Q 025857 58 ESKQVMTAAVERGWNTFVFL--SE--------NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQEL-QQL 126 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~--~~--------~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~l-e~a 126 (247)
.-.+.+..+++.|+|.+=+. +. ..+.++++.+.. +.+..+.+-+.+++.. +.+
T Consensus 20 ~l~~~i~~~~~~Gad~i~l~i~Dg~fv~~~~~~~~~~~~lr~~~----------------~~~~~v~lmv~d~~~~i~~~ 83 (228)
T 1h1y_A 20 NLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHT----------------KAYLDCHLMVTNPSDYVEPL 83 (228)
T ss_dssp GHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHHTTC----------------CSEEEEEEESSCGGGGHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEEEecCCcCcchhhCHHHHHHHHhhc----------------CCcEEEEEEecCHHHHHHHH
Confidence 34678899999999975222 11 134455444332 1223344445555432 223
Q ss_pred ccccCCCCeEEEecCCCeeechhhhhhcccCCCceEEEEc--CCHHHHHHHHHHhhc--ccCeEEEec
Q 025857 127 QPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAIS--KTPSEAQIFLEALEQ--GLGGIVLKV 190 (247)
Q Consensus 127 ~~~~~~~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v--~~~~EA~val~~LE~--G~DGVll~~ 190 (247)
.. ..++.+.+....-. -|++..+.++.+.+.+++..+ ++..|+ ....++. |+|-|++.+
T Consensus 84 ~~--agad~v~vH~~~~~-~~~~~~~~~i~~~g~~igv~~~p~t~~e~--~~~~~~~~~~~d~vl~~s 146 (228)
T 1h1y_A 84 AK--AGASGFTFHIEVSR-DNWQELIQSIKAKGMRPGVSLRPGTPVEE--VFPLVEAENPVELVLVMT 146 (228)
T ss_dssp HH--HTCSEEEEEGGGCT-TTHHHHHHHHHHTTCEEEEEECTTSCGGG--GHHHHHSSSCCSEEEEES
T ss_pred HH--cCCCEEEECCCCcc-cHHHHHHHHHHHcCCCEEEEEeCCCCHHH--HHHHHhcCCCCCEEEEEe
Confidence 22 36788887765322 243556666655566666666 343333 2334444 999999844
No 153
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=57.36 E-value=63 Score=26.20 Aligned_cols=110 Identities=13% Similarity=0.121 Sum_probs=58.2
Q ss_pred chhHHHHHHHhCCcEEEecCcc--------hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhcccc
Q 025857 59 SKQVMTAAVERGWNTFVFLSEN--------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPAD 130 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~~~~--------~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~ 130 (247)
..+-+..+++.|+|.+.+..+. .+.++.+.+. + | |..+ .+.+.+.++...+..
T Consensus 77 ~~~~i~~~~~~Gad~v~l~~~~~~~p~~~~~~~i~~~~~~--~-~------------~~~v--~~~~~t~~e~~~~~~-- 137 (223)
T 1y0e_A 77 TSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTH--A-P------------NVEI--MADIATVEEAKNAAR-- 137 (223)
T ss_dssp SHHHHHHHHHHTCSEEEEECSCSCCSSSCHHHHHHHHHHH--C-T------------TSEE--EEECSSHHHHHHHHH--
T ss_pred cHHHHHHHHhCCCCEEEEeeecccCcccCHHHHHHHHHHh--C-C------------CceE--EecCCCHHHHHHHHH--
Confidence 4567888999999998864321 1222222111 0 1 2222 345667776555433
Q ss_pred CCCCeEEEecCCC---e-----eec-hhhhhhccc-CCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 131 GQAENIVIDLPDW---Q-----VIP-AENIVASFQ-GSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 131 ~~~~~vVv~~~DW---t-----iIP-lENlIA~~q-~~~~~lia~--v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
..++++.+..... + --| ++ ++.++. ..+..+++. ++|.++++.++ +.|+|||++-+.
T Consensus 138 ~G~d~i~~~~~g~t~~~~~~~~~~~~~~-~~~~~~~~~~ipvia~GGI~~~~~~~~~~---~~Gad~v~vG~a 206 (223)
T 1y0e_A 138 LGFDYIGTTLHGYTSYTQGQLLYQNDFQ-FLKDVLQSVDAKVIAEGNVITPDMYKRVM---DLGVHCSVVGGA 206 (223)
T ss_dssp TTCSEEECTTTTSSTTSTTCCTTHHHHH-HHHHHHHHCCSEEEEESSCCSHHHHHHHH---HTTCSEEEECHH
T ss_pred cCCCEEEeCCCcCcCCCCCCCCCcccHH-HHHHHHhhCCCCEEEecCCCCHHHHHHHH---HcCCCEEEEChH
Confidence 2467765432111 1 111 22 233322 123556663 46888887765 469999998754
No 154
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=57.19 E-value=45 Score=24.15 Aligned_cols=67 Identities=10% Similarity=0.172 Sum_probs=39.1
Q ss_pred CCCeEEEecCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q--~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~ 200 (247)
..+.++++..-.. ..--.++..+. .....++...... +......+++.|++|.+.+|-+++++...-
T Consensus 48 ~~dlvllD~~l~~-~~g~~l~~~l~~~~~~~~ii~ls~~~-~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i 116 (137)
T 3cfy_A 48 KPQLIILDLKLPD-MSGEDVLDWINQNDIPTSVIIATAHG-SVDLAVNLIQKGAEDFLEKPINADRLKTSV 116 (137)
T ss_dssp CCSEEEECSBCSS-SBHHHHHHHHHHTTCCCEEEEEESSC-CHHHHHHHHHTTCSEEEESSCCHHHHHHHH
T ss_pred CCCEEEEecCCCC-CCHHHHHHHHHhcCCCCCEEEEEecC-cHHHHHHHHHCCccEEEeCCCCHHHHHHHH
Confidence 4577676643221 11122333332 2344555554432 344566788999999999999998776543
No 155
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=56.98 E-value=33 Score=29.21 Aligned_cols=127 Identities=16% Similarity=0.138 Sum_probs=64.0
Q ss_pred hhHHHHHHHhCCcEEEecCcch-HHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeEEE
Q 025857 60 KQVMTAAVERGWNTFVFLSENQ-QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~~~~-e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vVv 138 (247)
.+.+..+.+.|+|.+.+..+.- +..+.+ +.++..|.+.++-+...++. +.+.......|++.+
T Consensus 77 ~~~i~~~~~aGad~itvH~Ea~~~~~~~i--------------~~i~~~G~k~gval~p~t~~--e~l~~~l~~~D~Vl~ 140 (228)
T 3ovp_A 77 EQWVKPMAVAGANQYTFHLEATENPGALI--------------KDIRENGMKVGLAIKPGTSV--EYLAPWANQIDMALV 140 (228)
T ss_dssp GGGHHHHHHHTCSEEEEEGGGCSCHHHHH--------------HHHHHTTCEEEEEECTTSCG--GGTGGGGGGCSEEEE
T ss_pred HHHHHHHHHcCCCEEEEccCCchhHHHHH--------------HHHHHcCCCEEEEEcCCCCH--HHHHHHhccCCeEEE
Confidence 4578899999999988864310 000000 11123345555544433332 333333345788766
Q ss_pred ec-----CCCeeec--hhhhhhcccCC-CceEEEEcCCHHHHHHHHHHhhcccCeEEEe-----cCCHHH-HHHHHHhhc
Q 025857 139 DL-----PDWQVIP--AENIVASFQGS-GKTVFAISKTPSEAQIFLEALEQGLGGIVLK-----VEDVKA-VLALKEYFD 204 (247)
Q Consensus 139 ~~-----~DWtiIP--lENlIA~~q~~-~~~lia~v~~~~EA~val~~LE~G~DGVll~-----~~d~~e-v~~l~~~~~ 204 (247)
-. .+=+.|| ++. |..+... ....+.+..-.. .+.+-.+.+.|+|++|.- .+||.+ ++++++.+.
T Consensus 141 msv~pGf~Gq~f~~~~l~k-i~~lr~~~~~~~I~VdGGI~-~~t~~~~~~aGAd~~VvGsaIf~a~dp~~~~~~l~~~~~ 218 (228)
T 3ovp_A 141 MTVEPGFGGQKFMEDMMPK-VHWLRTQFPSLDIEVDGGVG-PDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCS 218 (228)
T ss_dssp ESSCTTTCSCCCCGGGHHH-HHHHHHHCTTCEEEEESSCS-TTTHHHHHHHTCCEEEESHHHHTCSCHHHHHHHHHHHHH
T ss_pred eeecCCCCCcccCHHHHHH-HHHHHHhcCCCCEEEeCCcC-HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHHH
Confidence 43 2334566 222 2222111 112233333222 345556789999999874 456654 566665543
No 156
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=56.93 E-value=55 Score=23.95 Aligned_cols=66 Identities=17% Similarity=0.217 Sum_probs=40.3
Q ss_pred CCCeEEEecCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcc-cCeEEEecCCHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQG-LGGIVLKVEDVKAVLAL 199 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q--~~~~~lia~v~~~~EA~val~~LE~G-~DGVll~~~d~~ev~~l 199 (247)
..+.+|++..-.. ..-..++..+. .....++...... +......+++.| ++|++.+|-++.++.+.
T Consensus 51 ~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~ii~ls~~~-~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~ 119 (154)
T 2rjn_A 51 SVQLVISDMRMPE-MGGEVFLEQVAKSYPDIERVVISGYA-DAQATIDAVNRGKISRFLLKPWEDEDVFKV 119 (154)
T ss_dssp CCSEEEEESSCSS-SCHHHHHHHHHHHCTTSEEEEEECGG-GHHHHHHHHHTTCCSEEEESSCCHHHHHHH
T ss_pred CCCEEEEecCCCC-CCHHHHHHHHHHhCCCCcEEEEecCC-CHHHHHHHHhccchheeeeCCCCHHHHHHH
Confidence 3677777654222 12223333332 2345666655443 355677888888 99999999998877543
No 157
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A
Probab=56.89 E-value=34 Score=28.36 Aligned_cols=59 Identities=20% Similarity=0.126 Sum_probs=46.5
Q ss_pred eeec-hhhhhhccc-CCCceEEEEcCCHH-----HHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 025857 144 QVIP-AENIVASFQ-GSGKTVFAISKTPS-----EAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (247)
Q Consensus 144 tiIP-lENlIA~~q-~~~~~lia~v~~~~-----EA~val~~LE~G~DGVll~~~d~~ev~~l~~~~ 203 (247)
+-|| ||.+++.+. +.+..+.-+.++.. -++..+..+++ .+-|++.+-|+..+..+++..
T Consensus 77 ~~iptL~evl~~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~-~~~v~i~Sf~~~~l~~~~~~~ 142 (224)
T 1vd6_A 77 PDLPRLEEVLALKEAFPQAVFNVELKSFPGLGEEAARRLAALLRG-REGVWVSSFDPLALLALRKAA 142 (224)
T ss_dssp TTCCBHHHHHGGGGTCTTCEEEEEECCCTTSHHHHHHHHHHHTTT-CSSEEEEESCHHHHHHHHHHC
T ss_pred CCCCCHHHHHHhhhccCCceEEEEECCCCCccHHHHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHC
Confidence 3455 999999987 55677888888643 25667888888 889999999999988888754
No 158
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=56.74 E-value=11 Score=33.03 Aligned_cols=36 Identities=14% Similarity=0.075 Sum_probs=28.7
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEecCcchHHHh
Q 025857 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSENQQLAI 85 (247)
Q Consensus 48 ~~~K~vWiW~-~~KevvT~ALEsG~d~~v~~~~~~e~~~ 85 (247)
.+-+.|++|| .+++.+...++.|+|+|+... .++++
T Consensus 266 ~~Gl~V~~WTVn~~~~~~~l~~~GVDgIiTD~--P~~~~ 302 (313)
T 3l12_A 266 DLGLIVLTWTVNEPEDIRRMATTGVDGIVTDY--PGRTQ 302 (313)
T ss_dssp HTTCEEEEBCCCSHHHHHHHHHHTCSEEEESC--HHHHH
T ss_pred HCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCC--HHHHH
Confidence 4567899999 679999999999999999743 44444
No 159
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=56.15 E-value=57 Score=23.90 Aligned_cols=40 Identities=15% Similarity=0.220 Sum_probs=29.0
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcc-cCeEEEecCCHHHHHHH
Q 025857 159 GKTVFAISKTPSEAQIFLEALEQG-LGGIVLKVEDVKAVLAL 199 (247)
Q Consensus 159 ~~~lia~v~~~~EA~val~~LE~G-~DGVll~~~d~~ev~~l 199 (247)
+..+|..... .+......+++.| +++++.+|-+++++.+.
T Consensus 86 ~~~ii~~s~~-~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~ 126 (153)
T 3hv2_A 86 STTRILLTGD-PDLKLIAKAINEGEIYRYLSKPWDDQELLLA 126 (153)
T ss_dssp TSEEEEECCC-CCHHHHHHHHHTTCCSEEECSSCCHHHHHHH
T ss_pred CCeEEEEECC-CCHHHHHHHHhCCCcceEEeCCCCHHHHHHH
Confidence 4556655543 3344567889999 99999999999877654
No 160
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=55.94 E-value=24 Score=26.27 Aligned_cols=41 Identities=24% Similarity=0.251 Sum_probs=28.8
Q ss_pred CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 025857 158 SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (247)
Q Consensus 158 ~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l 199 (247)
....+|......+ ......+++.|+++++.+|-++.++.+.
T Consensus 110 ~~~~ii~ls~~~~-~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 150 (157)
T 3hzh_A 110 KNARVIMISALGK-EQLVKDCLIKGAKTFIVKPLDRAKVLQR 150 (157)
T ss_dssp TTCCEEEEESCCC-HHHHHHHHHTTCSEEEESSCCHHHHHHH
T ss_pred CCCcEEEEeccCc-HHHHHHHHHcCCCEEEeCCCCHHHHHHH
Confidence 3456666655432 3445678899999999999999866543
No 161
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=55.81 E-value=50 Score=23.18 Aligned_cols=67 Identities=12% Similarity=0.146 Sum_probs=39.7
Q ss_pred CCCeEEEecCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q--~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~ 200 (247)
..+.++++..-+. ..--.++..++ ..+..++...... +......+++.|++|.+.+|-++.++.+.-
T Consensus 47 ~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~ii~~s~~~-~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i 115 (126)
T 1dbw_A 47 RNGVLVTDLRMPD-MSGVELLRNLGDLKINIPSIVITGHG-DVPMAVEAMKAGAVDFIEKPFEDTVIIEAI 115 (126)
T ss_dssp CSEEEEEECCSTT-SCHHHHHHHHHHTTCCCCEEEEECTT-CHHHHHHHHHTTCSEEEESSCCHHHHHHHH
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHhcCCCCCEEEEECCC-CHHHHHHHHHhCHHHheeCCCCHHHHHHHH
Confidence 3566666643222 12222333332 2345566555433 345667889999999999999999775543
No 162
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=55.68 E-value=20 Score=25.43 Aligned_cols=68 Identities=15% Similarity=0.226 Sum_probs=39.2
Q ss_pred CCCeEEEecCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q--~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
..+-++++..-.. ..--.++..+. ..+..++...... +......+++.|++|++.+|-+++++.+.-+
T Consensus 46 ~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~~ii~~s~~~-~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 115 (134)
T 3f6c_A 46 KPDIVIIDVDIPG-VNGIQVLETLRKRQYSGIIIIVSAKN-DHFYGKHCADAGANGFVSKKEGMNNIIAAIE 115 (134)
T ss_dssp CCSEEEEETTCSS-SCHHHHHHHHHHTTCCSEEEEEECC----CTHHHHHHTTCSEEEEGGGCTHHHHHHHH
T ss_pred CCCEEEEecCCCC-CChHHHHHHHHhcCCCCeEEEEeCCC-ChHHHHHHHHhCCCEEEeCCCCHHHHHHHHH
Confidence 4567777654322 11122333322 2345566555443 3345677889999999999999887765433
No 163
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=55.40 E-value=16 Score=30.56 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=16.3
Q ss_pred chhHHHHHHHhCCcEEEecC
Q 025857 59 SKQVMTAAVERGWNTFVFLS 78 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~~ 78 (247)
..+.+..+++.|+|++.+..
T Consensus 76 ~~~~i~~~~~agad~v~vH~ 95 (228)
T 1h1y_A 76 PSDYVEPLAKAGASGFTFHI 95 (228)
T ss_dssp GGGGHHHHHHHTCSEEEEEG
T ss_pred HHHHHHHHHHcCCCEEEECC
Confidence 34579999999999998763
No 164
>1sgj_A Citrate lyase, beta subunit; trimer, TIM barrel, structural genomics, PSI, protein structure initiative; 1.84A {Deinococcus radiodurans} SCOP: c.1.12.5
Probab=55.10 E-value=1e+02 Score=26.59 Aligned_cols=134 Identities=13% Similarity=0.093 Sum_probs=73.0
Q ss_pred CcEEEEEe--CchhHHHHHHHhCCcEEEecCcch--H--HHhhccceeEEeeeeecCCceec--CCCCeEEEEEEecC--
Q 025857 50 PKRVWIWT--ESKQVMTAAVERGWNTFVFLSENQ--Q--LAIDWSTIALLDPLFIKEGEVYD--SGDRRVGSIIEVST-- 119 (247)
Q Consensus 50 ~K~vWiW~--~~KevvT~ALEsG~d~~v~~~~~~--e--~~~~lg~i~~i~pl~i~~g~~~~--~~g~~va~~~~I~~-- 119 (247)
....|+|. .+.+.+..|+.+|+|.+++.-||. + .-+.-++-.+..- +.+ ++ ..+.. .++.|.+
T Consensus 7 ~~rs~L~~p~~~~~~~~~a~~~gaD~vilDlEdav~~~~~~k~~Ar~~v~~~--l~~---~~~~~~~~~--~~VRv~~~~ 79 (284)
T 1sgj_A 7 LLRSVLFAPGNRADLIAKLPRSAPDAVVIDLEDAVPGTAEAKAAARPVAHDA--ARD---LIAAAPHLA--VFVRVNALH 79 (284)
T ss_dssp CCSEEEEEETTCHHHHHHTTTTCCSEEEEESSTTSCSSHHHHHHHHHHHHHH--HHH---HHHHSTTSE--EEEECCCTT
T ss_pred CCceEEEccCCCHHHHHHHHhCCCCEEEEECCCCCCCchhhHHHHHHHHHHH--HHh---cccccCCCe--EEEEeCCCC
Confidence 44567776 788999999999999988753331 1 1011111111100 000 01 11233 3444443
Q ss_pred -hh---hHhhhccccCCCCeEEEecCC--CeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhc-ccCeEEEecCC
Q 025857 120 -PQ---ELQQLQPADGQAENIVIDLPD--WQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQ-GLGGIVLKVED 192 (247)
Q Consensus 120 -~e---~le~a~~~~~~~~~vVv~~~D--WtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~-G~DGVll~~~d 192 (247)
+. ++..+.. ..+.+++-.-. -++--+..++... +.+..+++.+.+++-...+-+++.. |+||+.+-+.|
T Consensus 80 ~~~~~~dl~~~l~---g~~~i~lPkv~s~~~v~~~~~~l~~~-g~~~~i~~~IEt~~av~~~~eIa~~~~vd~l~iG~~D 155 (284)
T 1sgj_A 80 SPYFEDDLSVLTP---ELSGVVVPKLEMGAEARQVAQMLQER-SLPLPILAGLETGAGVWNAREIMEVPEVAWAYFGAED 155 (284)
T ss_dssp STTHHHHGGGCCT---TSSEEEECSCCSHHHHHHHHHHHHHT-TCCCCEEEEECSHHHHHTHHHHHTSTTEEEEEECHHH
T ss_pred CHhHHHHHHHHhc---cCCEEEeCCCCCHHHHHHHHHHHHhc-CCCeEEEEEecCHHHHHHHHHHHcCCCCcEEEECHHH
Confidence 33 4433333 45665553221 1122222233222 2356789999999988888888854 89999999886
Q ss_pred HH
Q 025857 193 VK 194 (247)
Q Consensus 193 ~~ 194 (247)
..
T Consensus 156 L~ 157 (284)
T 1sgj_A 156 YT 157 (284)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 165
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=54.96 E-value=38 Score=25.10 Aligned_cols=71 Identities=13% Similarity=0.153 Sum_probs=40.9
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH-HHhhc
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL-KEYFD 204 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~----~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l-~~~~~ 204 (247)
..+.+|++..-.. ..--.++..+.. .+..++...... +......+++.|+++++.+|-++.++.+. +.++.
T Consensus 51 ~~dlii~D~~l~~-~~g~~~~~~lr~~~~~~~~pii~~s~~~-~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 126 (154)
T 3gt7_A 51 RPDLIISDVLMPE-MDGYALCRWLKGQPDLRTIPVILLTILS-DPRDVVRSLECGADDFITKPCKDVVLASHVKRLLS 126 (154)
T ss_dssp CCSEEEEESCCSS-SCHHHHHHHHHHSTTTTTSCEEEEECCC-SHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhCCCcCCCCEEEEECCC-ChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 4677777754222 111223333322 344566655432 33455677899999999999999877653 33433
No 166
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=54.95 E-value=14 Score=25.83 Aligned_cols=66 Identities=8% Similarity=0.041 Sum_probs=37.5
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~-~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l 199 (247)
..+.++++..-... .--.++..+.. .+..++......+ ......+++.|+++.+.+|-+++++...
T Consensus 47 ~~dlvi~D~~l~~~-~g~~~~~~l~~~~~~~ii~~s~~~~-~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 113 (123)
T 1xhf_A 47 DINLVIMDINLPGK-NGLLLARELREQANVALMFLTGRDN-EVDKILGLEIGADDYITKPFNPRELTIR 113 (123)
T ss_dssp CCSEEEECSSCSSS-CHHHHHHHHHHHCCCEEEEEESCCS-HHHHHHHHHHTCSEEEESSCCHHHHHHH
T ss_pred CCCEEEEcCCCCCC-CHHHHHHHHHhCCCCcEEEEECCCC-hHHHHHHHhcCcceEEeCCCCHHHHHHH
Confidence 45666665432211 11123333321 3455555554332 3345678899999999999999877543
No 167
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=54.49 E-value=19 Score=25.94 Aligned_cols=67 Identities=12% Similarity=0.150 Sum_probs=40.6
Q ss_pred CCCeEEEecCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q--~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
..+.+|++. -... .--.++..+. ..+..++......+ ......+++.|+++++.+|-+++++.+.-+
T Consensus 48 ~~dlvi~d~-~~~~-~g~~~~~~l~~~~~~~pii~ls~~~~-~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~ 116 (142)
T 2qxy_A 48 KIDLVFVDV-FEGE-ESLNLIRRIREEFPDTKVAVLSAYVD-KDLIINSVKAGAVDYILKPFRLDYLLERVK 116 (142)
T ss_dssp CCSEEEEEC-TTTH-HHHHHHHHHHHHCTTCEEEEEESCCC-HHHHHHHHHHTCSCEEESSCCHHHHHHHHH
T ss_pred CCCEEEEeC-CCCC-cHHHHHHHHHHHCCCCCEEEEECCCC-HHHHHHHHHCCcceeEeCCCCHHHHHHHHH
Confidence 467777765 2221 1112333332 23456666655433 455667889999999999999987765433
No 168
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=54.43 E-value=15 Score=25.57 Aligned_cols=66 Identities=11% Similarity=0.209 Sum_probs=37.5
Q ss_pred CCCeEEEecCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q--~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l 199 (247)
..+.++++..-+. ..--.++..++ ..+..++......+ ......+++.|+++.+.+|-+++++.+.
T Consensus 47 ~~dlil~D~~l~~-~~g~~~~~~l~~~~~~~~ii~~s~~~~-~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 114 (120)
T 1tmy_A 47 KPDIVTMDITMPE-MNGIDAIKEIMKIDPNAKIIVCSAMGQ-QAMVIEAIKAGAKDFIVKPFQPSRVVEA 114 (120)
T ss_dssp CCSEEEEECSCGG-GCHHHHHHHHHHHCTTCCEEEEECTTC-HHHHHHHHHTTCCEEEESSCCHHHHHHH
T ss_pred CCCEEEEeCCCCC-CcHHHHHHHHHhhCCCCeEEEEeCCCC-HHHHHHHHHhCcceeEeCCCCHHHHHHH
Confidence 3566666543221 11122333332 23445555554332 3345678899999999999999866543
No 169
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=54.34 E-value=12 Score=26.62 Aligned_cols=43 Identities=9% Similarity=-0.034 Sum_probs=31.0
Q ss_pred CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHh
Q 025857 158 SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEY 202 (247)
Q Consensus 158 ~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~ 202 (247)
.+..++......++.. ...++.|+++++.+|-+++++.+....
T Consensus 76 ~~~~ii~~s~~~~~~~--~~~~~~g~~~~l~KP~~~~~L~~~i~~ 118 (127)
T 3i42_A 76 KTSKFVAVSGFAKNDL--GKEACELFDFYLEKPIDIASLEPILQS 118 (127)
T ss_dssp SCCEEEEEECC-CTTC--CHHHHHHCSEEEESSCCHHHHHHHHHH
T ss_pred CCCCEEEEECCcchhH--HHHHHHhhHHheeCCCCHHHHHHHHHH
Confidence 4456777666655544 678899999999999999977655443
No 170
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=54.10 E-value=28 Score=27.33 Aligned_cols=68 Identities=16% Similarity=0.200 Sum_probs=42.6
Q ss_pred CCCeEEEecCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q--~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
..+.++++..-+..=.+ .++..+. ..+..++..... .+......+++.|++|++.+|-+++++.+.-+
T Consensus 46 ~~dlvllD~~l~~~~g~-~~~~~lr~~~~~~~ii~ls~~-~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~ 115 (225)
T 1kgs_A 46 PFDVVILDIMLPVHDGW-EILKSMRESGVNTPVLMLTAL-SDVEYRVKGLNMGADDYLPKPFDLRELIARVR 115 (225)
T ss_dssp CCSEEEEESCCSSSCHH-HHHHHHHHTTCCCCEEEEESS-CHHHHHHHTCCCCCSEEEESSCCHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHH-HHHHHHHhcCCCCCEEEEeCC-CCHHHHHHHHhCCccEEEeCCCCHHHHHHHHH
Confidence 46777777653332222 3333332 234556665543 34556778999999999999999998765433
No 171
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=53.91 E-value=54 Score=22.93 Aligned_cols=66 Identities=12% Similarity=0.153 Sum_probs=39.8
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~----~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l 199 (247)
..+.++++..-.. ..--.++..++. .+..++...... +......+++.|+++.+.+|-+++++.+.
T Consensus 49 ~~dlvi~D~~l~~-~~g~~l~~~l~~~~~~~~~~ii~~s~~~-~~~~~~~~~~~ga~~~l~KP~~~~~l~~~ 118 (128)
T 1jbe_A 49 GYGFVISDWNMPN-MDGLELLKTIRAXXAMSALPVLMVTAEA-KKENIIAAAQAGASGYVVKPFTAATLEEK 118 (128)
T ss_dssp CCCEEEEESCCSS-SCHHHHHHHHHC--CCTTCCEEEEESSC-CHHHHHHHHHTTCSEEEESSCCHHHHHHH
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhhcccCCCcEEEEecCc-cHHHHHHHHHhCcCceeecCCCHHHHHHH
Confidence 4567776654322 222234454443 234555554432 23455678899999999999999876543
No 172
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=53.77 E-value=17 Score=26.18 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=26.6
Q ss_pred eEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 025857 161 TVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (247)
Q Consensus 161 ~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~ 200 (247)
.++...... +......+++.|++|.+.+|-+++++.+.-
T Consensus 85 ~ii~~s~~~-~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l 123 (136)
T 1dcf_A 85 LLVALSGNT-DKSTKEKCMSFGLDGVLLKPVSLDNIRDVL 123 (136)
T ss_dssp EEEEEESCC-SHHHHHHHHHTTCCEEEESSCCHHHHHHHH
T ss_pred eEEEEeCCC-CHHHHHHHHHcCCCeEEECCCCHHHHHHHH
Confidence 344444332 233456788999999999999999776543
No 173
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=53.65 E-value=31 Score=27.92 Aligned_cols=25 Identities=8% Similarity=0.126 Sum_probs=17.4
Q ss_pred EEEEeCc-hhHHHHHHHhCCcEEEec
Q 025857 53 VWIWTES-KQVMTAAVERGWNTFVFL 77 (247)
Q Consensus 53 vWiW~~~-KevvT~ALEsG~d~~v~~ 77 (247)
+-+...+ .+.+..+++.|+|.+.+.
T Consensus 66 v~l~v~d~~~~i~~~~~~gad~v~vh 91 (220)
T 2fli_A 66 CHLMVVDPERYVEAFAQAGADIMTIH 91 (220)
T ss_dssp EEEESSSGGGGHHHHHHHTCSEEEEE
T ss_pred EEEeecCHHHHHHHHHHcCCCEEEEc
Confidence 3344333 335699999999999884
No 174
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=53.28 E-value=19 Score=29.75 Aligned_cols=68 Identities=15% Similarity=0.167 Sum_probs=40.4
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~-~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
..|.+|++..-+..=-+ .++..+.. .+..++..... .+......+++.|++|.+.+|-+++++.+.-+
T Consensus 81 ~~DlvllD~~lp~~~G~-~l~~~lr~~~~~~iI~lt~~-~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~ 149 (249)
T 3q9s_A 81 HPDLILLDLGLPDFDGG-DVVQRLRKNSALPIIVLTAR-DTVEEKVRLLGLGADDYLIKPFHPDELLARVK 149 (249)
T ss_dssp CCSEEEEECCSCHHHHH-HHHHHHHTTCCCCEEEEESC-CSHHHHHHHHHHTCSEEEESSCCHHHHHHHHH
T ss_pred CCCEEEEcCCCCCCCHH-HHHHHHHcCCCCCEEEEECC-CCHHHHHHHHHCCCcEEEECCCCHHHHHHHHH
Confidence 46777776543322112 23333322 33455555443 34455678889999999999999997765433
No 175
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=53.26 E-value=62 Score=25.28 Aligned_cols=68 Identities=16% Similarity=0.205 Sum_probs=39.2
Q ss_pred CCCeEEEecCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q--~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
..|.++++..-+..=-+ .++..+. .....++...... +......+++.|++|++.+|-++.++.+.-+
T Consensus 51 ~~dlvllD~~lp~~~g~-~~~~~lr~~~~~~~ii~ls~~~-~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~ 120 (215)
T 1a04_A 51 DPDLILLDLNMPGMNGL-ETLDKLREKSLSGRIVVFSVSN-HEEDVVTALKRGADGYLLKDMEPEDLLKALH 120 (215)
T ss_dssp CCSEEEEETTSTTSCHH-HHHHHHHHSCCCSEEEEEECCC-CHHHHHHHHHTTCSEEEETTCCHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCcHH-HHHHHHHHhCCCCcEEEEECCC-CHHHHHHHHHcCCcEEEeCCCCHHHHHHHHH
Confidence 45777776543221112 2233222 2344555554332 2345567889999999999999997765433
No 176
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=53.11 E-value=32 Score=31.47 Aligned_cols=54 Identities=17% Similarity=0.216 Sum_probs=32.6
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC-CCceEEE-EcCCHHHHHHHHHHhhcccCeEEE
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG-SGKTVFA-ISKTPSEAQIFLEALEQGLGGIVL 188 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~-~~~~lia-~v~~~~EA~val~~LE~G~DGVll 188 (247)
.++.++++...=.--.+.+.|.++.. .+..+++ .+.+.++|+.+ .+.|+|+|.+
T Consensus 117 Gad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l---~~aGaD~I~V 172 (361)
T 3khj_A 117 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKEL---IENGADGIKV 172 (361)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHH---HHTTCSEEEE
T ss_pred CcCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHH---HHcCcCEEEE
Confidence 57888876542110112233332222 1456775 88999998765 4789999998
No 177
>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3
Probab=52.84 E-value=14 Score=31.26 Aligned_cols=37 Identities=3% Similarity=-0.011 Sum_probs=28.2
Q ss_pred CCCcEEEEEe-CchhHHHH-HHHhCCcEEEecCcchHHHhh
Q 025857 48 SKPKRVWIWT-ESKQVMTA-AVERGWNTFVFLSENQQLAID 86 (247)
Q Consensus 48 ~~~K~vWiW~-~~KevvT~-ALEsG~d~~v~~~~~~e~~~~ 86 (247)
++-+.||+|+ .+++.+.. .++.|+|+|+... .+.+++
T Consensus 192 ~~G~~v~~wTvn~~~~~~~~l~~~GvdgIiTD~--p~~~~~ 230 (248)
T 1zcc_A 192 KAGLEIMVYYGGDDMAVHREIATSDVDYINLDR--PDLFAA 230 (248)
T ss_dssp HHTCEEEEECCCCCHHHHHHHHHSSCSEEEESC--HHHHHH
T ss_pred HCCCEEEEECCCCHHHHHHHHHHcCCCEEEECC--HHHHHH
Confidence 3567899999 57888888 9999999998743 444443
No 178
>3rlg_A Sphingomyelin phosphodiesterase D lisictox-alphai; TIM beta/alpha-barrel, PLC-like phosphodiesterase, inactive H12A phospholipase D; HET: PGE; 1.60A {Loxosceles intermedia} PDB: 3rlh_A*
Probab=52.59 E-value=15 Score=33.65 Aligned_cols=35 Identities=17% Similarity=0.398 Sum_probs=28.0
Q ss_pred CcEEEEEe-CchhHHHHHHHhCCcEEEecCcchHHHhh
Q 025857 50 PKRVWIWT-ESKQVMTAAVERGWNTFVFLSENQQLAID 86 (247)
Q Consensus 50 ~K~vWiW~-~~KevvT~ALEsG~d~~v~~~~~~e~~~~ 86 (247)
-++|++|| .+.+.|...++.|+|+|+... .+.+++
T Consensus 241 i~~V~vWTVNd~~~m~~l~~~GVDGIITD~--Pd~l~~ 276 (302)
T 3rlg_A 241 INKVYYWTVDKRSTTRDALDAGVDGIMTNY--PDVITD 276 (302)
T ss_dssp CSEEEEECCCSHHHHHHHHHTTCSEEEESC--HHHHHH
T ss_pred eEEEEEEeCCCHHHHHHHHHcCCCEEECCC--HHHHHH
Confidence 47899999 678999999999999999742 444443
No 179
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=52.15 E-value=55 Score=22.54 Aligned_cols=67 Identities=16% Similarity=0.161 Sum_probs=39.3
Q ss_pred CCCeEEEecCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q--~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~ 200 (247)
..+.++++..-.. ..--.++..++ ..+..++......+ ......+++.|++|.+.+|-+++++...-
T Consensus 44 ~~dlil~D~~l~~-~~g~~~~~~l~~~~~~~~ii~~s~~~~-~~~~~~~~~~g~~~~l~kp~~~~~l~~~i 112 (121)
T 2pl1_A 44 IPDIAIVDLGLPD-EDGLSLIRRWRSNDVSLPILVLTARES-WQDKVEVLSAGADDYVTKPFHIEEVMARM 112 (121)
T ss_dssp CCSEEEECSCCSS-SCHHHHHHHHHHTTCCSCEEEEESCCC-HHHHHHHHHTTCSEEEESSCCHHHHHHHH
T ss_pred CCCEEEEecCCCC-CCHHHHHHHHHhcCCCCCEEEEecCCC-HHHHHHHHHcCccceEECCCCHHHHHHHH
Confidence 4566666543222 12223344333 23445666554433 33456888999999999999998765443
No 180
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=51.69 E-value=13 Score=26.11 Aligned_cols=40 Identities=20% Similarity=0.178 Sum_probs=29.1
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 025857 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (247)
Q Consensus 159 ~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l 199 (247)
+..++...... +......+++.|++|.+.+|-+++++.+.
T Consensus 76 ~~~ii~~s~~~-~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~ 115 (127)
T 2jba_A 76 DIPVVMLTARG-EEEDRVRGLETGADDCITKPFSPKELVAR 115 (127)
T ss_dssp TSCEEEEEETT-HHHHHHTTCCCSCSEEEEESCCHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHhcCCCeEEeCCCCHHHHHHH
Confidence 45556555433 34566788999999999999999977543
No 181
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=51.59 E-value=99 Score=26.69 Aligned_cols=48 Identities=23% Similarity=0.342 Sum_probs=35.5
Q ss_pred CCCceEEEEcCCHHHHHHHHHHhhc------cc-----------------------CeEEEecCCHHHHHHHHHhhc
Q 025857 157 GSGKTVFAISKTPSEAQIFLEALEQ------GL-----------------------GGIVLKVEDVKAVLALKEYFD 204 (247)
Q Consensus 157 ~~~~~lia~v~~~~EA~val~~LE~------G~-----------------------DGVll~~~d~~ev~~l~~~~~ 204 (247)
+.++-++--|++++|++.+...+.. |. -.|+..-+++..+..+.+++.
T Consensus 90 g~~~I~~P~V~s~ee~~~~~~~~~~~p~G~Rg~~~~~~~~~~~g~~~~y~~~~~~~~~v~~~IEt~~av~~~~eIa~ 166 (267)
T 2vws_A 90 GAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEILD 166 (267)
T ss_dssp TCCEEEECCCCSHHHHHHHHHHTSCTTTSCCCSCGGGSGGGGGGTSTTHHHHHHHHCEEEEECCSHHHHHTHHHHHT
T ss_pred CCCEEEeCCCCCHHHHHHHHHHHcCCCCCccccccchhhhhhcCcchhhhhhcccccEEEEEECCHHHHHHHHHHhC
Confidence 3445577788999999998888742 22 137778899999988888874
No 182
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=50.92 E-value=64 Score=22.93 Aligned_cols=69 Identities=17% Similarity=0.078 Sum_probs=40.9
Q ss_pred CCCCeEEEecCCCeeechhhhhhccc------CCCceEEEEcCCHHHHHHHHHHhhcc-cCeEEEecCCHHHHHHHHH
Q 025857 131 GQAENIVIDLPDWQVIPAENIVASFQ------GSGKTVFAISKTPSEAQIFLEALEQG-LGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 131 ~~~~~vVv~~~DWtiIPlENlIA~~q------~~~~~lia~v~~~~EA~val~~LE~G-~DGVll~~~d~~ev~~l~~ 201 (247)
...+.+|++..-.. ..--.++..++ ..+..++..... .+......+++.| +++++.+|-+++++.+.-+
T Consensus 59 ~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~~~~~ii~~t~~-~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~ 134 (146)
T 3ilh_A 59 RWPSIICIDINMPG-INGWELIDLFKQHFQPMKNKSIVCLLSSS-LDPRDQAKAEASDWVDYYVSKPLTANALNNLYN 134 (146)
T ss_dssp CCCSEEEEESSCSS-SCHHHHHHHHHHHCGGGTTTCEEEEECSS-CCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHH
T ss_pred CCCCEEEEcCCCCC-CCHHHHHHHHHHhhhhccCCCeEEEEeCC-CChHHHHHHHhcCCcceeeeCCCCHHHHHHHHH
Confidence 45677777754322 12222333332 244555555543 3334556788999 9999999999997654433
No 183
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=50.89 E-value=65 Score=23.03 Aligned_cols=65 Identities=12% Similarity=0.097 Sum_probs=38.7
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~--~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~ 200 (247)
..+.+|++..-.. ..--.++..+.. ....++......+ ....+++.|+++++.+|-+++++.+.-
T Consensus 55 ~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~ii~~s~~~~---~~~~~~~~g~~~~l~KP~~~~~l~~~i 121 (143)
T 2qv0_A 55 KVDAIFLDINIPS-LDGVLLAQNISQFAHKPFIVFITAWKE---HAVEAFELEAFDYILKPYQESRIINML 121 (143)
T ss_dssp CCSEEEECSSCSS-SCHHHHHHHHTTSTTCCEEEEEESCCT---THHHHHHTTCSEEEESSCCHHHHHHHH
T ss_pred CCCEEEEecCCCC-CCHHHHHHHHHccCCCceEEEEeCCHH---HHHHHHhCCcceEEeCCCCHHHHHHHH
Confidence 3566666643222 222234444433 2334565555533 356778999999999999998775543
No 184
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=50.64 E-value=42 Score=31.75 Aligned_cols=65 Identities=12% Similarity=0.104 Sum_probs=41.1
Q ss_pred hhHhhhccc-cCCCCeEEEecCCCeeechhhhhhcccCC--CceEEEE-cCCHHHHHHHHHHhhcccCeEEE
Q 025857 121 QELQQLQPA-DGQAENIVIDLPDWQVIPAENIVASFQGS--GKTVFAI-SKTPSEAQIFLEALEQGLGGIVL 188 (247)
Q Consensus 121 e~le~a~~~-~~~~~~vVv~~~DWtiIPlENlIA~~q~~--~~~lia~-v~~~~EA~val~~LE~G~DGVll 188 (247)
+.++.+..+ ...++.++++...-.--.+.++|.++... +..|++. +.+.++|+.+ .+.|+|+|.+
T Consensus 229 ~~~~~a~~l~~aG~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l---~~aGaD~I~v 297 (490)
T 4avf_A 229 DTGERVAALVAAGVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKAL---AEAGADAVKV 297 (490)
T ss_dssp THHHHHHHHHHTTCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHH---HHTTCSEEEE
T ss_pred chHHHHHHHhhcccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHH---HHcCCCEEEE
Confidence 444444322 23588988887654444445566555432 3455654 8899888664 5689999998
No 185
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=50.57 E-value=33 Score=29.64 Aligned_cols=114 Identities=14% Similarity=0.084 Sum_probs=59.8
Q ss_pred CchhHHHHHHHhCCcEEEecCc---ch-HHHhhccceeEEeeeeecCCceecCC---------CCeEEEEEEecChhhHh
Q 025857 58 ESKQVMTAAVERGWNTFVFLSE---NQ-QLAIDWSTIALLDPLFIKEGEVYDSG---------DRRVGSIIEVSTPQELQ 124 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~~---~~-e~~~~lg~i~~i~pl~i~~g~~~~~~---------g~~va~~~~I~~~e~le 124 (247)
.....+..+.+.|+|.+.|..+ +. +.++. +++. |+++++.....++. +
T Consensus 80 ~p~~~i~~~~~aGAd~itvH~ea~~~~~~~i~~-----------------i~~~~~~~~~~~~g~~~gv~l~p~Tp~--~ 140 (237)
T 3cu2_A 80 NQLEVAKAVVANGANLVTLQLEQYHDFALTIEW-----------------LAKQKTTYANQVYPVLIGACLCPETPI--S 140 (237)
T ss_dssp CHHHHHHHHHHTTCSEEEEETTCTTSHHHHHHH-----------------HTTCEEEETTEEEECEEEEEECTTSCG--G
T ss_pred CHHHHHHHHHHcCCCEEEEecCCcccHHHHHHH-----------------HHhcccccccccCCceEEEEEeCCChH--H
Confidence 4567899999999999877532 21 11111 1223 45666665545543 3
Q ss_pred hhccccCCCCeEEE---e--cCCCeeec--hhhh---hhcccCCC-ceEEEEcCCHHHHHHHHHHhh--cccCeEEEecC
Q 025857 125 QLQPADGQAENIVI---D--LPDWQVIP--AENI---VASFQGSG-KTVFAISKTPSEAQIFLEALE--QGLGGIVLKVE 191 (247)
Q Consensus 125 ~a~~~~~~~~~vVv---~--~~DWtiIP--lENl---IA~~q~~~-~~lia~v~~~~EA~val~~LE--~G~DGVll~~~ 191 (247)
.+.......|++.+ + |..-+.+| +|.| -+..+..+ ...|.+-.-.. .+.+-.+.+ .|+|+++.-+.
T Consensus 141 ~l~~~l~~~D~vlvMsv~pgfggq~f~~~~l~ki~~lr~~~~~~~~~~~I~vdGGI~-~~~~~~~~~~~aGad~~VvGSa 219 (237)
T 3cu2_A 141 ELEPYLDQIDVIQLLTLDPRNGTKYPSELILDRVIQVEKRLGNRRVEKLINIDGSMT-LELAKYFKQGTHQIDWLVSGSA 219 (237)
T ss_dssp GGTTTTTTCSEEEEESEETTTTEECCHHHHHHHHHHHHHHHGGGGGGCEEEEESSCC-HHHHHHHHHSSSCCCCEEECGG
T ss_pred HHHHHhhcCceeeeeeeccCcCCeecChhHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHhCCCCcEEEEeeH
Confidence 33444446888776 2 33334454 4433 11111111 12343333222 233445678 89999998643
No 186
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=50.52 E-value=15 Score=26.60 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=28.1
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 160 ~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
..++...... +......+++.|++|.+.+|-+++++.+.-+
T Consensus 82 ~~ii~lt~~~-~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~ 122 (133)
T 2r25_B 82 SPIVALTAFA-DDSNIKECLESGMNGFLSKPIKRPKLKTILT 122 (133)
T ss_dssp SCEEEEESCC-SHHHHHHHHHTTCSEEEESSCCHHHHHHHHH
T ss_pred CCEEEEECCC-CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Confidence 4455544332 2345567889999999999999997765443
No 187
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=50.07 E-value=67 Score=22.90 Aligned_cols=68 Identities=12% Similarity=0.207 Sum_probs=40.7
Q ss_pred CCCeEEEecCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q--~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
..+.++++..-+. +.--.++..++ ..+..++......+ ......+++.|++|.+.+|-+++++.+.-+
T Consensus 49 ~~dlvilD~~lp~-~~g~~~~~~l~~~~~~~~ii~ls~~~~-~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~ 118 (133)
T 3b2n_A 49 NPNVVILDIEMPG-MTGLEVLAEIRKKHLNIKVIIVTTFKR-PGYFEKAVVNDVDAYVLKERSIEELVETIN 118 (133)
T ss_dssp CCSEEEECSSCSS-SCHHHHHHHHHHTTCSCEEEEEESCCC-HHHHHHHHHTTCSEEEETTSCHHHHHHHHH
T ss_pred CCCEEEEecCCCC-CCHHHHHHHHHHHCCCCcEEEEecCCC-HHHHHHHHHcCCcEEEECCCCHHHHHHHHH
Confidence 4577676654222 22223333332 23456666654433 345567889999999999999997765433
No 188
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=49.87 E-value=14 Score=26.70 Aligned_cols=42 Identities=5% Similarity=0.019 Sum_probs=28.3
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 159 ~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
+..++...... +......+++.|+++++.+|-+++++.+.-+
T Consensus 80 ~~~ii~~s~~~-~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~ 121 (136)
T 3kto_A 80 HLPTIVMASSS-DIPTAVRAMRASAADFIEKPFIEHVLVHDVQ 121 (136)
T ss_dssp CCCEEEEESSC-CHHHHHHHHHTTCSEEEESSBCHHHHHHHHH
T ss_pred CCCEEEEEcCC-CHHHHHHHHHcChHHheeCCCCHHHHHHHHH
Confidence 34455444332 3345567789999999999999987765433
No 189
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=49.58 E-value=16 Score=26.31 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=28.4
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 025857 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (247)
Q Consensus 159 ~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l 199 (247)
+..++...... +......+++.|++|.+.+|-++.++.+.
T Consensus 75 ~~~ii~~s~~~-~~~~~~~~~~~ga~~~l~KP~~~~~L~~~ 114 (132)
T 3crn_A 75 GMKKIMVTGYA-SLENSVFSLNAGADAYIMKPVNPRDLLEK 114 (132)
T ss_dssp TSEEEEEESCC-CHHHHHHHHHTTCSEEEESSCCHHHHHHH
T ss_pred CCcEEEEeccc-cHHHHHHHHhccchhhccCCCCHHHHHHH
Confidence 45666555433 23455678899999999999999876543
No 190
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=49.46 E-value=1.3e+02 Score=26.11 Aligned_cols=109 Identities=9% Similarity=-0.018 Sum_probs=59.1
Q ss_pred EEEEeCchhHHHHHHHhCCcEE-EecC---------c-----chHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEe
Q 025857 53 VWIWTESKQVMTAAVERGWNTF-VFLS---------E-----NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV 117 (247)
Q Consensus 53 vWiW~~~KevvT~ALEsG~d~~-v~~~---------~-----~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I 117 (247)
+.++....+++..+.+.|++.+ ++.+ . +.+.++++.+. -+.+ +.+.+
T Consensus 24 ~i~~~~~~~~a~~~~~~Ga~~I~~l~p~~~~~~~~~G~~~~~~~~~i~~I~~~----------------~~iP--v~~k~ 85 (305)
T 2nv1_A 24 VIMDVINAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNA----------------VSIP--VMAKA 85 (305)
T ss_dssp EEEEESSHHHHHHHHHTTCSEEEECCC-------CCCCCCCCCHHHHHHHHHH----------------CSSC--EEEEE
T ss_pred eeecCCHHHHHHHHHHcCCCEEEEcCCCcchhhhccCcccCCCHHHHHHHHHh----------------CCCC--EEecc
Confidence 4446677899999999999999 4421 0 22333332111 0111 11122
Q ss_pred cC--hhhHhhhccccCCCCeEEEecCCCeeechhhhhhcc--cCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 025857 118 ST--PQELQQLQPADGQAENIVIDLPDWQVIPAENIVASF--QGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (247)
Q Consensus 118 ~~--~e~le~a~~~~~~~~~vVv~~~DWtiIPlENlIA~~--q~~~~~lia~v~~~~EA~val~~LE~G~DGVll 188 (247)
.. .++.+.+.. ..++.++ ...+ .|.+.+...+ +..+..++..+.+++||..++ +.|+|-|.+
T Consensus 86 r~g~~~~~~~~~a--~GAd~V~-~~~~---l~~~~~~~~i~~~~~g~~v~~~~~~~~e~~~a~---~~Gad~V~~ 151 (305)
T 2nv1_A 86 RIGHIVEARVLEA--MGVDYID-ESEV---LTPADEEFHLNKNEYTVPFVCGCRDLGEATRRI---AEGASMLRT 151 (305)
T ss_dssp CTTCHHHHHHHHH--HTCSEEE-ECTT---SCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHH---HTTCSEEEE
T ss_pred cccchHHHHHHHH--CCCCEEE-Eecc---CCHHHHHHHHHHhccCCcEEEEeCCHHHHHHHH---HCCCCEEEe
Confidence 21 233333332 3577765 2222 2333322211 233467889999999987764 889999888
No 191
>1u5h_A CITE; TIM barrel, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC, lyase; 1.65A {Mycobacterium tuberculosis} SCOP: c.1.12.5 PDB: 1u5v_A* 1z6k_A
Probab=49.41 E-value=32 Score=30.02 Aligned_cols=85 Identities=14% Similarity=0.142 Sum_probs=56.1
Q ss_pred eEEEEEEecChhhHhhhccccCCCCeEEEecCCCeeech------hhhhhcccCCCceEEEEcCCHHHH---HHHHHHhh
Q 025857 110 RVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPA------ENIVASFQGSGKTVFAISKTPSEA---QIFLEALE 180 (247)
Q Consensus 110 ~va~~~~I~~~e~le~a~~~~~~~~~vVv~~~DWtiIPl------ENlIA~~q~~~~~lia~v~~~~EA---~val~~LE 180 (247)
+.-.|+.-.+++-++.+.. ..|+++++..|= +.|- +||.+. ...+..++..+++.+.. +-.-.+++
T Consensus 8 rs~L~vP~~~~~~~~ka~~---gaD~vilDlEDa-v~~~~k~~Ar~~l~~~-~~~~~~~~VRVn~~~~~~~~~dl~~~~~ 82 (273)
T 1u5h_A 8 PGWLFCPADAPEAFAAAAA---AADVVILDLEDG-VAEAQKPAARNALRDT-PLDPERTVVRINAGGTADQARDLEALAG 82 (273)
T ss_dssp SEEEEEETTCGGGHHHHHH---HCSEEEEESSTT-SCGGGHHHHHHHHHHS-CCCTTSEEEECCCTTCHHHHHHHHHHHT
T ss_pred CeEEEeeCCCHHHHHHHHh---CCCEEEEECCCC-CCcCCHHHHHHHHHhc-CcCCCeEEEEECCCCchHHHHHHHHHHh
Confidence 3445666666776666654 689999999873 3333 455554 43445789999876621 33445678
Q ss_pred cccCeEEEe-cCCHHHHHHH
Q 025857 181 QGLGGIVLK-VEDVKAVLAL 199 (247)
Q Consensus 181 ~G~DGVll~-~~d~~ev~~l 199 (247)
.|+|||+|+ .++++++..+
T Consensus 83 ~g~~gi~lPKv~s~~~v~~~ 102 (273)
T 1u5h_A 83 TAYTTVMLPKAESAAQVIEL 102 (273)
T ss_dssp SCCCEEEETTCCCHHHHHTT
T ss_pred cCCCEEEeCCCCCHHHHHHH
Confidence 899999996 5667877644
No 192
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=49.18 E-value=98 Score=27.26 Aligned_cols=47 Identities=17% Similarity=0.308 Sum_probs=35.0
Q ss_pred CCceEEEEcCCHHHHHHHHHHhh------ccc-----------------------CeEEEecCCHHHHHHHHHhhc
Q 025857 158 SGKTVFAISKTPSEAQIFLEALE------QGL-----------------------GGIVLKVEDVKAVLALKEYFD 204 (247)
Q Consensus 158 ~~~~lia~v~~~~EA~val~~LE------~G~-----------------------DGVll~~~d~~ev~~l~~~~~ 204 (247)
..+-++--|++++||+.+...+. +|. -.|+..-+++..+..+.+++.
T Consensus 112 a~~ImlP~V~saeea~~~~~~~~~~p~G~Rg~g~~~~ra~~~g~~~~y~~~~~~~~~vi~mIEt~~av~n~deIaa 187 (287)
T 2v5j_A 112 TQTLLVPMVQNADEAREAVRATRYPPAGIRGVGSALARASRWNRIPDYLQKANDQMCVLVQIETREAMKNLPQILD 187 (287)
T ss_dssp CCEEEESCCCSHHHHHHHHHHTSCTTTSCCCGGGTTTGGGTTTTSTTHHHHHHHHCEEEEEECSHHHHHTHHHHHT
T ss_pred CCEEEeCCCCCHHHHHHHHHHhccCccCccccccchhhhhhccchhhhHhhcCCCcEEEEEECcHHHHHHHHHHhC
Confidence 44556777899999999888763 332 237778899999988888874
No 193
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}
Probab=48.92 E-value=12 Score=31.67 Aligned_cols=36 Identities=17% Similarity=0.348 Sum_probs=28.4
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEecCcchHHHh
Q 025857 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSENQQLAI 85 (247)
Q Consensus 48 ~~~K~vWiW~-~~KevvT~ALEsG~d~~v~~~~~~e~~~ 85 (247)
++-+.|++|+ .+++.+...++.|+|+|+... .+.+.
T Consensus 209 ~~G~~v~~wTvn~~~~~~~l~~~GvdgIiTD~--P~~~~ 245 (252)
T 2pz0_A 209 KNGVKLFPWTVDRKEDMERMIKAGVDGIITDD--PETLI 245 (252)
T ss_dssp HTTCEECCBCCCSHHHHHHHHHHTCSEEEESC--HHHHH
T ss_pred HCCCEEEEECCCCHHHHHHHHHcCCCEEEcCC--HHHHH
Confidence 4567899999 678899999999999998743 44444
No 194
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=48.91 E-value=56 Score=25.74 Aligned_cols=68 Identities=18% Similarity=0.163 Sum_probs=42.1
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~-~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
..+.++++..-+..=-+ .++..+.. .+..++......+ ......+++.|++|++.+|-+++++.+.-+
T Consensus 48 ~~dlvllD~~l~~~~g~-~~~~~l~~~~~~~ii~lt~~~~-~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~ 116 (230)
T 2oqr_A 48 GADIVLLDLMLPGMSGT-DVCKQLRARSSVPVIMVTARDS-EIDKVVGLELGADDYVTKPYSARELIARIR 116 (230)
T ss_dssp CCSEEEEESSCSSSCHH-HHHHHHHHHCSCSEEEEECCHH-HHHHHHHHHHCCSCCCCSSCCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHH-HHHHHHHcCCCCCEEEEeCCCc-HHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Confidence 46777777543321112 22332221 3456666665544 456778899999999999999997765443
No 195
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=48.78 E-value=79 Score=26.57 Aligned_cols=36 Identities=11% Similarity=0.030 Sum_probs=24.2
Q ss_pred CCHHHHHHH-HHHhhcccCeEEEec-CCHHHHHHHHHh
Q 025857 167 KTPSEAQIF-LEALEQGLGGIVLKV-EDVKAVLALKEY 202 (247)
Q Consensus 167 ~~~~EA~va-l~~LE~G~DGVll~~-~d~~ev~~l~~~ 202 (247)
.+.++...+ ..+.|.|+|.|.+.+ -|++.++++++.
T Consensus 163 ~~~~~~~~~a~~a~~~Gad~i~~~~~~~~~~l~~i~~~ 200 (273)
T 2qjg_A 163 RDPELVAHAARLGAELGADIVKTSYTGDIDSFRDVVKG 200 (273)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEECCCSSHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHh
Confidence 345554433 677899999998885 467766666553
No 196
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=48.27 E-value=26 Score=31.48 Aligned_cols=51 Identities=16% Similarity=0.351 Sum_probs=38.2
Q ss_pred CCCeEEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~ 189 (247)
..+.+.+.+.. |...++..+.+.+..++..+.+.++|+. +.+.|+|+|++.
T Consensus 122 g~~~V~~~~g~----~~~~~i~~~~~~g~~v~~~v~t~~~a~~---a~~~GaD~i~v~ 172 (369)
T 3bw2_A 122 PVPVVSFHFGV----PDREVIARLRRAGTLTLVTATTPEEARA---VEAAGADAVIAQ 172 (369)
T ss_dssp CCSEEEEESSC----CCHHHHHHHHHTTCEEEEEESSHHHHHH---HHHTTCSEEEEE
T ss_pred CCCEEEEeCCC----CcHHHHHHHHHCCCeEEEECCCHHHHHH---HHHcCCCEEEEe
Confidence 57777777654 3345666666667788999999999875 457899999993
No 197
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=46.77 E-value=27 Score=30.51 Aligned_cols=126 Identities=13% Similarity=0.185 Sum_probs=65.2
Q ss_pred hhHHHHHHHhCCcEEEecCcch-HHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeEEE
Q 025857 60 KQVMTAAVERGWNTFVFLSENQ-QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~~~~-e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vVv 138 (247)
...+..+.+.|+|.+-|..+.- +..+.+ +.+++.|.+.|+-+.-.++- +.+.......|+|++
T Consensus 99 ~~~i~~~~~aGAd~itvH~Ea~~~~~~~i--------------~~ir~~G~k~Gvalnp~Tp~--e~l~~~l~~vD~Vlv 162 (246)
T 3inp_A 99 DALIESFAKAGATSIVFHPEASEHIDRSL--------------QLIKSFGIQAGLALNPATGI--DCLKYVESNIDRVLI 162 (246)
T ss_dssp HHHHHHHHHHTCSEEEECGGGCSCHHHHH--------------HHHHTTTSEEEEEECTTCCS--GGGTTTGGGCSEEEE
T ss_pred HHHHHHHHHcCCCEEEEccccchhHHHHH--------------HHHHHcCCeEEEEecCCCCH--HHHHHHHhcCCEEEE
Confidence 4578899999999988864310 000000 11234466666654433333 333333345788766
Q ss_pred e-----cCCCeeec--hhhh---hhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEe-----cCCHH-HHHHHH
Q 025857 139 D-----LPDWQVIP--AENI---VASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK-----VEDVK-AVLALK 200 (247)
Q Consensus 139 ~-----~~DWtiIP--lENl---IA~~q--~~~~~lia~v~~~~EA~val~~LE~G~DGVll~-----~~d~~-ev~~l~ 200 (247)
- |.+-+.|| +|.| -+.+. +.+. .|.+-.-.. .+.+-++.+.|+|.++.- .+||. .+++++
T Consensus 163 MsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~-~I~VDGGI~-~~ti~~~~~aGAD~~V~GSaIf~a~dp~~~i~~l~ 240 (246)
T 3inp_A 163 MSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDI-LLEIDGGVN-PYNIAEIAVCGVNAFVAGSAIFNSDSYKQTIDKMR 240 (246)
T ss_dssp ECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSCC-EEEEESSCC-TTTHHHHHTTTCCEEEESHHHHTSSCHHHHHHHHH
T ss_pred eeecCCCCCcccchHHHHHHHHHHHHHHhcCCCe-eEEEECCcC-HHHHHHHHHcCCCEEEEehHHhCCCCHHHHHHHHH
Confidence 3 23445566 3432 11111 1121 233333222 235667899999999974 45764 466666
Q ss_pred Hhh
Q 025857 201 EYF 203 (247)
Q Consensus 201 ~~~ 203 (247)
+.+
T Consensus 241 ~~i 243 (246)
T 3inp_A 241 DEL 243 (246)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 198
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=46.76 E-value=33 Score=24.70 Aligned_cols=42 Identities=10% Similarity=0.141 Sum_probs=28.6
Q ss_pred CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 025857 158 SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (247)
Q Consensus 158 ~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~ 200 (247)
.+..++...... +......+++.|+++++.+|-+++++.+.-
T Consensus 75 ~~~~ii~~s~~~-~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i 116 (140)
T 3n53_A 75 KNVPLILLFSSE-HKEAIVNGLHSGADDYLTKPFNRNDLLSRI 116 (140)
T ss_dssp TTCCEEEEECC-----CTTTTTTCCCSEEEESSCCHHHHHHHH
T ss_pred CCCCEEEEecCC-CHHHHHHHHhcCCCeeeeCCCCHHHHHHHH
Confidence 345566655543 334567789999999999999998776543
No 199
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=46.68 E-value=25 Score=32.54 Aligned_cols=110 Identities=14% Similarity=0.074 Sum_probs=58.5
Q ss_pred CchhHHHHHHHhCCcEEEecCcc-hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccc-cCCCCe
Q 025857 58 ESKQVMTAAVERGWNTFVFLSEN-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA-DGQAEN 135 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~~~-~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~-~~~~~~ 135 (247)
-+.++..++-+.|.-+++-..-. .+.+++..+... .+++.+- ..+...+.+... ...++.
T Consensus 54 te~~lA~A~a~~Gg~gvi~~~~s~ee~~~~i~~~~~-----------------~~~~~~g-~~~~~~e~~~~a~~aGvdv 115 (361)
T 3r2g_A 54 TESNMANFMHSKGAMGALHRFMTIEENIQEFKKCKG-----------------PVFVSVG-CTENELQRAEALRDAGADF 115 (361)
T ss_dssp CSHHHHHHHHHTTCEEBCCSCSCHHHHHHHHHTCCS-----------------CCBEEEC-SSHHHHHHHHHHHHTTCCE
T ss_pred hHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHhhcce-----------------EEEEEcC-CCHHHHHHHHHHHHcCCCE
Confidence 45788888888887666632111 233333322221 1111111 122333333222 235788
Q ss_pred EEEecC-CCeeechhhhhhcccCC--CceEEE-EcCCHHHHHHHHHHhhcccCeEEEe
Q 025857 136 IVIDLP-DWQVIPAENIVASFQGS--GKTVFA-ISKTPSEAQIFLEALEQGLGGIVLK 189 (247)
Q Consensus 136 vVv~~~-DWtiIPlENlIA~~q~~--~~~lia-~v~~~~EA~val~~LE~G~DGVll~ 189 (247)
+.++.. +.. -.+.++|+.+... +..|++ .+.++++|+.+ .+.|+|+|.+.
T Consensus 116 I~id~a~G~~-~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a---~~aGaD~I~Vg 169 (361)
T 3r2g_A 116 FCVDVAHAHA-KYVGKTLKSLRQLLGSRCIMAGNVATYAGADYL---ASCGADIIKAG 169 (361)
T ss_dssp EEEECSCCSS-HHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHH---HHTTCSEEEEC
T ss_pred EEEeCCCCCc-HhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHH---HHcCCCEEEEc
Confidence 777643 221 1223345554432 567888 59999998765 47799999983
No 200
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=46.60 E-value=51 Score=28.51 Aligned_cols=108 Identities=17% Similarity=0.123 Sum_probs=65.6
Q ss_pred chhHHHHHHHhCCcEEEecCc---------chHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccc
Q 025857 59 SKQVMTAAVERGWNTFVFLSE---------NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~~~---------~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~ 129 (247)
--++...+.+.|++++=+..+ +...+++--++ |+...| -|.|+.++..+..
T Consensus 67 p~~~A~~~~~~GA~~isvlt~~~~f~G~~~~l~~i~~~v~l----Pvl~kd---------------fI~d~~qi~~a~~- 126 (254)
T 1vc4_A 67 PVEAALAYARGGARAVSVLTEPHRFGGSLLDLKRVREAVDL----PLLRKD---------------FVVDPFMLEEARA- 126 (254)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCSSSCCCHHHHHHHHHHCCS----CEEEES---------------CCCSHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCCEEEEecchhhhccCHHHHHHHHHhcCC----CEEECC---------------cCCCHHHHHHHHH-
Confidence 367888999999999766321 12233332222 322211 1345666655432
Q ss_pred cCCCCeEEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 130 DGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 130 ~~~~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
..+|.|++-..+-+ =-++.++...+.-+...+.++++.+|++ .+++.|+|=|=+.+.
T Consensus 127 -~GAD~VlL~~~~l~-~~l~~l~~~a~~lGl~~lvev~~~~E~~---~a~~~gad~IGvn~~ 183 (254)
T 1vc4_A 127 -FGASAALLIVALLG-ELTGAYLEEARRLGLEALVEVHTERELE---IALEAGAEVLGINNR 183 (254)
T ss_dssp -TTCSEEEEEHHHHG-GGHHHHHHHHHHHTCEEEEEECSHHHHH---HHHHHTCSEEEEESB
T ss_pred -cCCCEEEECccchH-HHHHHHHHHHHHCCCeEEEEECCHHHHH---HHHHcCCCEEEEccc
Confidence 36788887766444 3566666633333566789999999987 566778898877654
No 201
>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O
Probab=46.59 E-value=1.2e+02 Score=27.08 Aligned_cols=81 Identities=19% Similarity=0.147 Sum_probs=45.1
Q ss_pred cChhhHhhhcccc--CCCCeEEEecCCCeeechhhhhhcccCCCceEEEEc--C-CHHHHHHHH-HHhhcccCeEEEe--
Q 025857 118 STPQELQQLQPAD--GQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAIS--K-TPSEAQIFL-EALEQGLGGIVLK-- 189 (247)
Q Consensus 118 ~~~e~le~a~~~~--~~~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v--~-~~~EA~val-~~LE~G~DGVll~-- 189 (247)
.|++.+..++..+ -.+|+|-..... =-++.+++.. +..|++.= + +.+|+-... ++++.|++|+++-
T Consensus 186 ~d~e~i~~aariA~elGAD~VKt~~t~---e~~~~vv~~~---~vPVv~~GG~~~~~~~~l~~v~~ai~aGA~Gv~vGRn 259 (295)
T 3glc_A 186 RDQRYFSLATRIAAEMGAQIIKTYYVE---KGFERIVAGC---PVPIVIAGGKKLPEREALEMCWQAIDQGASGVDMGRN 259 (295)
T ss_dssp CSHHHHHHHHHHHHHTTCSEEEEECCT---TTHHHHHHTC---SSCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEESHH
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCCCH---HHHHHHHHhC---CCcEEEEECCCCCHHHHHHHHHHHHHhCCeEEEeHHH
Confidence 4555445444333 257887766441 1256666643 33444433 2 555554444 7889999999875
Q ss_pred ---cCCHHH-HHHHHHhhc
Q 025857 190 ---VEDVKA-VLALKEYFD 204 (247)
Q Consensus 190 ---~~d~~e-v~~l~~~~~ 204 (247)
.+||.+ +++|.+++.
T Consensus 260 I~q~~dp~~~~~al~~ivh 278 (295)
T 3glc_A 260 IFQSDHPVAMMKAVQAVVH 278 (295)
T ss_dssp HHTSSSHHHHHHHHHHHHH
T ss_pred HhcCcCHHHHHHHHHHHHh
Confidence 346654 444555543
No 202
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=46.59 E-value=1.1e+02 Score=26.98 Aligned_cols=119 Identities=13% Similarity=0.061 Sum_probs=74.7
Q ss_pred hhHHHHHHHhCCcEEEecCc---------chHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhcccc
Q 025857 60 KQVMTAAVERGWNTFVFLSE---------NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPAD 130 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~~---------~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~ 130 (247)
-++.....+.|++++=+..+ +...+++--++.++ .+|. |.|+.++..+. .
T Consensus 82 ~~~A~~y~~~GA~~IsVltd~~~f~Gs~~~L~~ir~~v~lPVl----~Kdf---------------i~d~~qi~ea~--~ 140 (272)
T 3tsm_A 82 PALAKAYEEGGAACLSVLTDTPSFQGAPEFLTAARQACSLPAL----RKDF---------------LFDPYQVYEAR--S 140 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCSTTTCCCHHHHHHHHHTSSSCEE----EESC---------------CCSTHHHHHHH--H
T ss_pred HHHHHHHHHCCCCEEEEeccccccCCCHHHHHHHHHhcCCCEE----ECCc---------------cCCHHHHHHHH--H
Confidence 56677777889999755221 23334333333332 2121 34666666654 3
Q ss_pred CCCCeEEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC-------HHHHHHHHHh
Q 025857 131 GQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED-------VKAVLALKEY 202 (247)
Q Consensus 131 ~~~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d-------~~ev~~l~~~ 202 (247)
.+++.|++....-+-=-|+.++...+.-+-.++.+++|.+|++.+ ++.|+|=|=+...| ++...+|...
T Consensus 141 ~GAD~VlLi~a~L~~~~l~~l~~~a~~lGl~~lvevh~~eEl~~A---~~~ga~iIGinnr~l~t~~~dl~~~~~L~~~ 216 (272)
T 3tsm_A 141 WGADCILIIMASVDDDLAKELEDTAFALGMDALIEVHDEAEMERA---LKLSSRLLGVNNRNLRSFEVNLAVSERLAKM 216 (272)
T ss_dssp TTCSEEEEETTTSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHH---TTSCCSEEEEECBCTTTCCBCTHHHHHHHHH
T ss_pred cCCCEEEEcccccCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH---HhcCCCEEEECCCCCccCCCChHHHHHHHHh
Confidence 367888888776543347788877777778899999999998765 57899966666443 4444455443
No 203
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=46.43 E-value=17 Score=25.60 Aligned_cols=67 Identities=13% Similarity=0.137 Sum_probs=38.5
Q ss_pred CCCeEEEecCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q--~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~ 200 (247)
..+.++++..-+. ..--.++..++ ..+..++...... +......+++.|++|.+.+|-+++++.+.-
T Consensus 47 ~~dlvl~D~~l~~-~~g~~~~~~l~~~~~~~~ii~~s~~~-~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i 115 (124)
T 1srr_A 47 RPDLVLLDMKIPG-MDGIEILKRMKVIDENIRVIIMTAYG-ELDMIQESKELGALTHFAKPFDIDEIRDAV 115 (124)
T ss_dssp CCSEEEEESCCTT-CCHHHHHHHHHHHCTTCEEEEEESSC-CHHHHHHHHHHTCCCEEESSCCHHHHHHHH
T ss_pred CCCEEEEecCCCC-CCHHHHHHHHHHhCCCCCEEEEEccC-chHHHHHHHhcChHhhccCCCCHHHHHHHH
Confidence 3566666543221 11122333332 2345566555432 334566788999999999999999775543
No 204
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=46.43 E-value=74 Score=25.74 Aligned_cols=68 Identities=12% Similarity=0.140 Sum_probs=40.3
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~--~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
..|.++++..-+. ..--.++..+.. .+..++...... +......+++.|+||.+.+|-+++++.+.-+
T Consensus 67 ~~dlvllD~~lp~-~~g~~~~~~lr~~~~~~~ii~lt~~~-~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~ 136 (250)
T 3r0j_A 67 RPDAVILDVXMPG-MDGFGVLRRLRADGIDAPALFLTARD-SLQDKIAGLTLGGDDYVTKPFSLEEVVARLR 136 (250)
T ss_dssp CCSEEEEESCCSS-SCHHHHHHHHHHTTCCCCEEEEECST-THHHHHHHHTSTTCEEEESSCCHHHHHHHHH
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCCEEEEECCC-CHHHHHHHHHcCCcEEEeCCCCHHHHHHHHH
Confidence 4577777654222 112233333322 234555554433 3445677899999999999999987764433
No 205
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=46.07 E-value=20 Score=25.52 Aligned_cols=39 Identities=13% Similarity=0.020 Sum_probs=27.1
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHH
Q 025857 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (247)
Q Consensus 159 ~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~ 198 (247)
+..++...... +......+++.|+++.+.+|-+++++.+
T Consensus 76 ~~pii~~s~~~-~~~~~~~~~~~Ga~~~l~KP~~~~~L~~ 114 (122)
T 3gl9_A 76 RIPVIVLTAKG-GEEDESLALSLGARKVMRKPFSPSQFIE 114 (122)
T ss_dssp TSCEEEEESCC-SHHHHHHHHHTTCSEEEESSCCHHHHHH
T ss_pred CCCEEEEecCC-chHHHHHHHhcChhhhccCCCCHHHHHH
Confidence 34556555432 2334567889999999999999986654
No 206
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=45.84 E-value=19 Score=24.89 Aligned_cols=40 Identities=20% Similarity=0.096 Sum_probs=27.2
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 025857 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (247)
Q Consensus 159 ~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l 199 (247)
+..++......+ ......+++.|++|.+.+|-+++++.+.
T Consensus 72 ~~~ii~~s~~~~-~~~~~~~~~~g~~~~l~Kp~~~~~l~~~ 111 (120)
T 2a9o_A 72 SVPILMLSAKDS-EFDKVIGLELGADDYVTKPFSNRELQAR 111 (120)
T ss_dssp CCCEEEEESCCS-HHHHHHHHHHTCSEEEESSCCHHHHHHH
T ss_pred CCCEEEEecCCc-hHHHHHHHhCCHhheEeCCCCHHHHHHH
Confidence 344555544332 2345567899999999999999976543
No 207
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=45.13 E-value=30 Score=32.97 Aligned_cols=55 Identities=15% Similarity=0.198 Sum_probs=38.8
Q ss_pred CCCCeEEEecCCCeeechhhhhhcccCC--CceEEE-EcCCHHHHHHHHHHhhcccCeEEE
Q 025857 131 GQAENIVIDLPDWQVIPAENIVASFQGS--GKTVFA-ISKTPSEAQIFLEALEQGLGGIVL 188 (247)
Q Consensus 131 ~~~~~vVv~~~DWtiIPlENlIA~~q~~--~~~lia-~v~~~~EA~val~~LE~G~DGVll 188 (247)
..++.++++..+..-..+.++|.++... +..+++ .+.+.++|+.+. +.|+|+|++
T Consensus 267 aGvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~---~aGad~i~v 324 (511)
T 3usb_A 267 ASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALI---EAGANVVKV 324 (511)
T ss_dssp TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHH---HHTCSEEEE
T ss_pred hccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHH---HhCCCEEEE
Confidence 4688999988766555566677665432 234554 788998887765 579999997
No 208
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=44.93 E-value=23 Score=24.74 Aligned_cols=67 Identities=15% Similarity=0.070 Sum_probs=36.4
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~----~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~ 200 (247)
..+.++++..-.. ..--.++..++. .+..++..... .+......+++.|+++.+.+|-++.++.+.-
T Consensus 45 ~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~~~ii~~s~~-~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i 115 (124)
T 1mb3_A 45 KPDLILMDIQLPE-ISGLEVTKWLKEDDDLAHIPVVAVTAF-AMKGDEERIREGGCEAYISKPISVVHFLETI 115 (124)
T ss_dssp CCSEEEEESBCSS-SBHHHHHHHHHHSTTTTTSCEEEEC-------CHHHHHHHTCSEEECSSCCHHHHHHHH
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHcCccccCCcEEEEECC-CCHHHHHHHHhCCCCEEEeCCCCHHHHHHHH
Confidence 3566666543222 112233443332 23455555443 3344556778999999999999998775443
No 209
>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7
Probab=44.65 E-value=1.2e+02 Score=27.26 Aligned_cols=73 Identities=14% Similarity=0.171 Sum_probs=49.6
Q ss_pred CCCeEEEecCCC----------eeechhhhhhcc-------cCCCceEEEEcCCH-----HHH-HHHHHHhhcccCeEEE
Q 025857 132 QAENIVIDLPDW----------QVIPAENIVASF-------QGSGKTVFAISKTP-----SEA-QIFLEALEQGLGGIVL 188 (247)
Q Consensus 132 ~~~~vVv~~~DW----------tiIPlENlIA~~-------q~~~~~lia~v~~~-----~EA-~val~~LE~G~DGVll 188 (247)
.+.-+-|+...| +++|.|..++.+ .+.+.-|+|..... +|| +-+.--.|.|+|+|.+
T Consensus 111 Gaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~~~~gldeai~Ra~ay~~AGAD~if~ 190 (298)
T 3eoo_A 111 GVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMARTDAAAAEGIDAAIERAIAYVEAGADMIFP 190 (298)
T ss_dssp TCSEEEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTHHHHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCeEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEeehhhhhcCHHHHHHHHHhhHhcCCCEEEe
Confidence 455667777666 489999766554 33556788877654 222 3344456789999999
Q ss_pred e-cCCHHHHHHHHHhhc
Q 025857 189 K-VEDVKAVLALKEYFD 204 (247)
Q Consensus 189 ~-~~d~~ev~~l~~~~~ 204 (247)
. +.|+++++++.+.+.
T Consensus 191 ~~~~~~ee~~~~~~~~~ 207 (298)
T 3eoo_A 191 EAMKTLDDYRRFKEAVK 207 (298)
T ss_dssp CCCCSHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHcC
Confidence 6 457998888877653
No 210
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri}
Probab=44.61 E-value=23 Score=29.74 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=26.0
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEec
Q 025857 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (247)
Q Consensus 48 ~~~K~vWiW~-~~KevvT~ALEsG~d~~v~~ 77 (247)
++-+.||+|+ .+++.+...++.|+|+|+..
T Consensus 205 ~~G~~v~~wTvn~~~~~~~l~~~GvdgI~TD 235 (247)
T 2otd_A 205 DAGLRILVYTVNKPQHAAELLRWGVDCICTD 235 (247)
T ss_dssp HTTCEEEEECCCCHHHHHHHHHHTCSEEEES
T ss_pred HCCCEEEEEccCCHHHHHHHHHcCCCEEEeC
Confidence 4567899999 67899999999999999974
No 211
>2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A
Probab=44.19 E-value=16 Score=31.60 Aligned_cols=36 Identities=14% Similarity=-0.100 Sum_probs=28.4
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEecCcchHHHh
Q 025857 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSENQQLAI 85 (247)
Q Consensus 48 ~~~K~vWiW~-~~KevvT~ALEsG~d~~v~~~~~~e~~~ 85 (247)
.+-+.|++|+ .+++.+...++.|+|+|+... .+++.
T Consensus 239 ~~G~~v~~wTvn~~~~~~~l~~~GVdgIiTD~--P~~~~ 275 (287)
T 2oog_A 239 DLGFIVHPYTVNEKADMLRLNKYGVDGVFTNF--ADKYK 275 (287)
T ss_dssp HTTCEECCBCCCSHHHHHHHHHHTCSEEEESC--HHHHH
T ss_pred HCCCeEEEEeCCCHHHHHHHHHcCCCEEEeCC--HHHHH
Confidence 4567899999 678999999999999998742 44443
No 212
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=44.09 E-value=1.2e+02 Score=27.85 Aligned_cols=110 Identities=15% Similarity=0.056 Sum_probs=60.0
Q ss_pred chhHHHHHHHhCCcEEEecC--cch----HHHhhccceeEEeeeeecCCceecCCCCeEEEEE-EecChhhHhhhccccC
Q 025857 59 SKQVMTAAVERGWNTFVFLS--ENQ----QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSII-EVSTPQELQQLQPADG 131 (247)
Q Consensus 59 ~KevvT~ALEsG~d~~v~~~--~~~----e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~-~I~~~e~le~a~~~~~ 131 (247)
..+.+..++|.|+|.+.+.. .+. +.++.+.+. .| +.+ ++. .+.++++...+.. .
T Consensus 101 ~~e~~~~a~~aGvdvI~id~a~G~~~~~~e~I~~ir~~---~~------------~~~--Vi~G~V~T~e~A~~a~~--a 161 (361)
T 3r2g_A 101 ELQRAEALRDAGADFFCVDVAHAHAKYVGKTLKSLRQL---LG------------SRC--IMAGNVATYAGADYLAS--C 161 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEECSCCSSHHHHHHHHHHHHH---HT------------TCE--EEEEEECSHHHHHHHHH--T
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCcHhHHHHHHHHHHh---cC------------CCe--EEEcCcCCHHHHHHHHH--c
Confidence 57889999999999776632 121 122211110 01 111 222 5678877665543 3
Q ss_pred CCCeEEEecC---CCe-------eec-hhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 132 QAENIVIDLP---DWQ-------VIP-AENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 132 ~~~~vVv~~~---DWt-------iIP-lENlIA~~q~~~~~lia--~v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
.+|.|+|... -++ -+| ++-|....+... .||+ .+.+..++..++ +.|+|+|++-+.
T Consensus 162 GaD~I~Vg~g~G~~~~tr~~~g~g~p~l~aI~~~~~~~~-PVIAdGGI~~~~di~kAL---a~GAd~V~iGr~ 230 (361)
T 3r2g_A 162 GADIIKAGIGGGSVCSTRIKTGFGVPMLTCIQDCSRADR-SIVADGGIKTSGDIVKAL---AFGADFVMIGGM 230 (361)
T ss_dssp TCSEEEECCSSSSCHHHHHHHCCCCCHHHHHHHHTTSSS-EEEEESCCCSHHHHHHHH---HTTCSEEEESGG
T ss_pred CCCEEEEcCCCCcCccccccCCccHHHHHHHHHHHHhCC-CEEEECCCCCHHHHHHHH---HcCCCEEEEChH
Confidence 5888887422 111 134 333333222222 5676 457777776655 579999998654
No 213
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=43.82 E-value=23 Score=25.72 Aligned_cols=39 Identities=8% Similarity=0.158 Sum_probs=27.5
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 025857 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (247)
Q Consensus 160 ~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l 199 (247)
..++..... .+......+++.|+++.+.+|-++.++.+.
T Consensus 79 ~pii~~t~~-~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~ 117 (136)
T 3t6k_A 79 LPILMLTAQ-GDISAKIAGFEAGANDYLAKPFEPQELVYR 117 (136)
T ss_dssp CCEEEEECT-TCHHHHHHHHHHTCSEEEETTCCHHHHHHH
T ss_pred ccEEEEecC-CCHHHHHHHHhcCcceEEeCCCCHHHHHHH
Confidence 345554443 233455678899999999999999977643
No 214
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=43.65 E-value=50 Score=22.67 Aligned_cols=63 Identities=6% Similarity=0.079 Sum_probs=38.0
Q ss_pred CCCeEEEecCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q--~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~ 198 (247)
..+.++++..-.. ..--.++..++ ..+..++......+.. ..+++.|++|.+.+|-+++++.+
T Consensus 45 ~~dlvl~D~~l~~-~~g~~~~~~l~~~~~~~~ii~~s~~~~~~---~~~~~~g~~~~l~Kp~~~~~l~~ 109 (116)
T 3a10_A 45 NYDLVILDIEMPG-ISGLEVAGEIRKKKKDAKIILLTAYSHYR---SDMSSWAADEYVVKSFNFDELKE 109 (116)
T ss_dssp CCSEEEECSCCSS-SCHHHHHHHHHHHCTTCCEEEEESCGGGG---GCGGGGGSSEEEECCSSTHHHHH
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHccCCCCeEEEEECCcchH---HHHHhccccceEECCCCHHHHHH
Confidence 4567676654222 12223333332 2345666666554433 67889999999999999886643
No 215
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}
Probab=43.49 E-value=15 Score=31.05 Aligned_cols=50 Identities=16% Similarity=0.401 Sum_probs=34.1
Q ss_pred CeeechhhhhhcccCCCceEEEE-cCCHHHHHHHHHHhhcccCeEEEecCCHHHHHH
Q 025857 143 WQVIPAENIVASFQGSGKTVFAI-SKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (247)
Q Consensus 143 WtiIPlENlIA~~q~~~~~lia~-v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~ 198 (247)
+..+. +.+|++++..+.++++- +++.++++.+ ++.|+|||+ ||+|..+.+
T Consensus 196 ~~~~~-~~~v~~~~~~G~~v~~wTvn~~~~~~~l---~~~GvdgIi--TD~P~~~~~ 246 (252)
T 2pz0_A 196 YFNII-PELVEGCKKNGVKLFPWTVDRKEDMERM---IKAGVDGII--TDDPETLIN 246 (252)
T ss_dssp GGGCC-HHHHHHHHHTTCEECCBCCCSHHHHHHH---HHHTCSEEE--ESCHHHHHH
T ss_pred hhcCC-HHHHHHHHHCCCEEEEECCCCHHHHHHH---HHcCCCEEE--cCCHHHHHH
Confidence 44444 56777777777666553 5777777655 678999976 788986543
No 216
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=42.92 E-value=77 Score=26.18 Aligned_cols=31 Identities=23% Similarity=0.219 Sum_probs=22.2
Q ss_pred HHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 025857 174 IFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (247)
Q Consensus 174 val~~LE~G~DGVll~~~d~~ev~~l~~~~~ 204 (247)
.+-.+++.|+|||++....+.+..++.+.+.
T Consensus 100 ~~~~~~~~Gad~v~~~~~~~~~~~~~~~~~~ 130 (248)
T 1geq_A 100 FLAEAKASGVDGILVVDLPVFHAKEFTEIAR 130 (248)
T ss_dssp HHHHHHHHTCCEEEETTCCGGGHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEECCCChhhHHHHHHHHH
Confidence 3344567799999999877776666666554
No 217
>3qll_A Citrate lyase; beta barrel; 2.45A {Yersinia pestis}
Probab=42.63 E-value=1.7e+02 Score=26.16 Aligned_cols=91 Identities=14% Similarity=0.094 Sum_probs=50.1
Q ss_pred EEEEEecChhhHhhhccccCCCCeEEEecCCCeeec------hhhhhhcccCC---CceEEEEcCCHHH---HHHHHHHh
Q 025857 112 GSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIP------AENIVASFQGS---GKTVFAISKTPSE---AQIFLEAL 179 (247)
Q Consensus 112 a~~~~I~~~e~le~a~~~~~~~~~vVv~~~DWtiIP------lENlIA~~q~~---~~~lia~v~~~~E---A~val~~L 179 (247)
-.|+.-.+++-++.+.. ..+|++|++..|= +.| .+|+.+.++.. +..++..+++.+- ..-...+|
T Consensus 48 ~L~vP~~~p~~~eka~~--~gaD~vilDLEDa-V~~~~k~~Ar~~l~~~l~~~~~~~~~~~VRVn~~~t~~~~~Dl~~~l 124 (316)
T 3qll_A 48 WLFTPATRSDRFAKAAE--NGADVAIIDLEDS-VSQADKEQARQKAISYLSSRPATSLPLALRINGLDTRAGIEDIHALL 124 (316)
T ss_dssp EEEEESCC------------CCSEEEEECSTT-SCGGGHHHHHHHHHC---------CCEEEECCCTTSHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHhh--CCCCEEEEeCCCC-CCCcCHHHHHHHHHHHHhcccccCCeEEEEECCCCCchhHHHHHHHH
Confidence 34444445555554432 3689999998873 333 34555555432 3578889987641 12233566
Q ss_pred hccc--CeEEEe-cCCHHHHHHHHHhhcc
Q 025857 180 EQGL--GGIVLK-VEDVKAVLALKEYFDG 205 (247)
Q Consensus 180 E~G~--DGVll~-~~d~~ev~~l~~~~~~ 205 (247)
..|. |||+|+ .++++++..+.+.+..
T Consensus 125 ~~g~~~~gIvlPKvesa~~v~~~~~~l~~ 153 (316)
T 3qll_A 125 ECGSLPDYLVLPKTESAAHLQILDRLMMF 153 (316)
T ss_dssp HSCCCCSEEEETTCCSHHHHHHHHHHTSC
T ss_pred hCCCCCCEEEeCCCCCHHHHHHHHHHHHh
Confidence 7775 999997 5778999888887754
No 218
>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=42.56 E-value=16 Score=30.96 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=25.1
Q ss_pred CCCcEEEEEe-CchhHHHHHHHhCCcEEEec
Q 025857 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (247)
Q Consensus 48 ~~~K~vWiW~-~~KevvT~ALEsG~d~~v~~ 77 (247)
.+-..|++|+ .+++.+...++.|+|+|+..
T Consensus 234 ~~Gl~v~~wTvn~~~~~~~l~~~GvdgIiTD 264 (272)
T 3ch0_A 234 KLGMRVIPWTVNTKEEIETLISLGVDGIITD 264 (272)
T ss_dssp HTTCEECCBCCCSHHHHHHHHHHTCSEEEES
T ss_pred HcCCEEEEeccCCHHHHHHHHHcCCCEEEeC
Confidence 4567799999 57888999999999999874
No 219
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=42.13 E-value=36 Score=27.38 Aligned_cols=69 Identities=14% Similarity=0.181 Sum_probs=39.3
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHh
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEY 202 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~-~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~~ 202 (247)
..+.++++..-...=.+ .++..+.. .+..++......+ ......+++.|++|++.+|-+++++.+.-+.
T Consensus 49 ~~dlvilD~~l~~~~g~-~~~~~lr~~~~~~ii~lt~~~~-~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~ 118 (238)
T 2gwr_A 49 RPDLVLLDLMLPGMNGI-DVCRVLRADSGVPIVMLTAKTD-TVDVVLGLESGADDYIMKPFKPKELVARVRA 118 (238)
T ss_dssp CCSEEEEESSCSSSCHH-HHHHHHHTTCCCCEEEEEETTC-CSCHHHHHHTTCCEEEEESCCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHH-HHHHHHHhCCCCcEEEEeCCCC-HHHHHHHHHCCCCEEEeCCCCHHHHHHHHHH
Confidence 45677776543221112 23333322 2345555443322 2345567899999999999999977654443
No 220
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=41.43 E-value=30 Score=23.36 Aligned_cols=62 Identities=15% Similarity=0.129 Sum_probs=37.5
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~----~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~ 198 (247)
..+.++++..-.. ..-..++..++. .+..++......+.. ..++.|+++++.+|-+++++.+
T Consensus 45 ~~dlii~d~~~~~-~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~----~~~~~g~~~~l~kp~~~~~l~~ 110 (119)
T 2j48_A 45 QPIVILMAWPPPD-QSCLLLLQHLREHQADPHPPLVLFLGEPPVD----PLLTAQASAILSKPLDPQLLLT 110 (119)
T ss_dssp CCSEEEEECSTTC-CTHHHHHHHHHHTCCCSSCCCEEEESSCCSS----HHHHHHCSEECSSCSTTHHHHH
T ss_pred CCCEEEEecCCCC-CCHHHHHHHHHhccccCCCCEEEEeCCCCch----hhhhcCHHHhccCCCCHHHHHH
Confidence 4577777654322 222334444332 345566665543332 8889999999999998886543
No 221
>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*
Probab=41.03 E-value=1.7e+02 Score=25.03 Aligned_cols=112 Identities=13% Similarity=0.019 Sum_probs=63.2
Q ss_pred EEEEeCchhHHHHHHHhCCcEEEec----Cc-----------chHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEe
Q 025857 53 VWIWTESKQVMTAAVERGWNTFVFL----SE-----------NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV 117 (247)
Q Consensus 53 vWiW~~~KevvT~ALEsG~d~~v~~----~~-----------~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I 117 (247)
+..+-...+++..+.+.|++.+.+. .+ +.+.++++.+. -+.++-....+
T Consensus 24 ~i~~~~~~~~a~~~~~~Ga~~i~~~e~v~~~~~~~~G~~~~~~~~~i~~i~~~----------------~~~Pvi~~~~~ 87 (297)
T 2zbt_A 24 VIMDVTTPEQAVIAEEAGAVAVMALERVPADIRAQGGVARMSDPKIIKEIMAA----------------VSIPVMAKVRI 87 (297)
T ss_dssp EEEEESSHHHHHHHHHHTCSEEEECSSCHHHHHHTTCCCCCCCHHHHHHHHTT----------------CSSCEEEEEET
T ss_pred eeeeechHHHHHHHHHCCCcEEEeccccchHHHhhcCCccCCCHHHHHHHHHh----------------cCCCeEEEecc
Confidence 4456667899999999999998652 11 12222222211 12222222233
Q ss_pred cChhhHhhhccccCCCCeEEEecCCCeeechhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 025857 118 STPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (247)
Q Consensus 118 ~~~e~le~a~~~~~~~~~vVv~~~DWtiIPlENlIA~~q~~--~~~lia~v~~~~EA~val~~LE~G~DGVll~ 189 (247)
.+.++.+.+.. ..++.+...+ + .++..++..+.+. +.-+.+.+.+++|++. +.+.|+|-|.++
T Consensus 88 ~~~~~~~~~~~--aGad~v~~~~-~---~~~~~~~~~~~~~~~~i~l~~~v~~~~~~~~---a~~~Gad~I~v~ 152 (297)
T 2zbt_A 88 GHFVEAMILEA--IGVDFIDESE-V---LTPADEEHHIDKWKFKVPFVCGARNLGEALR---RIAEGAAMIRTK 152 (297)
T ss_dssp TCHHHHHHHHH--TTCSEEEEET-T---SCCSCSSCCCCGGGCSSCEEEEESSHHHHHH---HHHTTCSEEEEC
T ss_pred CCHHHHHHHHH--CCCCEEeeeC-C---CChHHHHHHHHHhCCCceEEeecCCHHHHHH---HHHcCCCEEEEc
Confidence 34555555543 3567762222 1 2334555554432 4456677899999876 478999998765
No 222
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=41.01 E-value=34 Score=26.46 Aligned_cols=41 Identities=15% Similarity=0.296 Sum_probs=28.7
Q ss_pred CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 025857 158 SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (247)
Q Consensus 158 ~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l 199 (247)
.+..++...... +......+++.|++|.+.+|-++.++.+.
T Consensus 78 ~~~~ii~lt~~~-~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~ 118 (184)
T 3rqi_A 78 PDARILVLTGYA-SIATAVQAVKDGADNYLAKPANVESILAA 118 (184)
T ss_dssp TTCEEEEEESSC-CHHHHHHHHHHTCSEEEESSCCHHHHHHH
T ss_pred CCCCEEEEeCCC-CHHHHHHHHHhCHHHheeCCCCHHHHHHH
Confidence 345666555432 33456678899999999999999866543
No 223
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=40.63 E-value=53 Score=30.31 Aligned_cols=101 Identities=10% Similarity=0.038 Sum_probs=62.5
Q ss_pred hhHHHHHHHhCCcEEEecCcchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeEEEe
Q 025857 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vVv~ 139 (247)
..+.....+.|.+-+++.. +.+.++++.+... ..++.+.++++-++.+- ...++.+|+-
T Consensus 17 ~~va~~L~~~g~~vvvId~-d~~~v~~~~~~g~------------------~vi~GDat~~~~L~~ag--i~~A~~viv~ 75 (413)
T 3l9w_A 17 QITGRLLLSSGVKMVVLDH-DPDHIETLRKFGM------------------KVFYGDATRMDLLESAG--AAKAEVLINA 75 (413)
T ss_dssp HHHHHHHHHTTCCEEEEEC-CHHHHHHHHHTTC------------------CCEESCTTCHHHHHHTT--TTTCSEEEEC
T ss_pred HHHHHHHHHCCCCEEEEEC-CHHHHHHHHhCCC------------------eEEEcCCCCHHHHHhcC--CCccCEEEEC
Confidence 4556666678988777763 3555555432111 12344455666665552 2367887777
Q ss_pred cCCCeeechhhhhhc----ccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 025857 140 LPDWQVIPAENIVAS----FQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (247)
Q Consensus 140 ~~DWtiIPlENlIA~----~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll 188 (247)
..| +-.|+.+. -.+.+.+||+.+++.+.+... .+.|+|-|+-
T Consensus 76 ~~~----~~~n~~i~~~ar~~~p~~~Iiara~~~~~~~~L---~~~Gad~Vi~ 121 (413)
T 3l9w_A 76 IDD----PQTNLQLTEMVKEHFPHLQIIARARDVDHYIRL---RQAGVEKPER 121 (413)
T ss_dssp CSS----HHHHHHHHHHHHHHCTTCEEEEEESSHHHHHHH---HHTTCSSCEE
T ss_pred CCC----hHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHH---HHCCCCEEEC
Confidence 766 44554332 224456899999999998876 4689998874
No 224
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=40.26 E-value=1.3e+02 Score=24.59 Aligned_cols=110 Identities=10% Similarity=0.116 Sum_probs=59.8
Q ss_pred CchhHHHHHHHhCCcEEEec-------Cc---chHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChh-hHhhh
Q 025857 58 ESKQVMTAAVERGWNTFVFL-------SE---NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQ-ELQQL 126 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~-------~~---~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e-~le~a 126 (247)
.-.+.+..+.+.|++.+=+. +. ..+.++++.+.. +.++.+.+.+.+++ .++.+
T Consensus 24 ~~~~~i~~~~~~G~d~i~l~~~dg~f~~~~~~~~~~i~~l~~~~----------------~~~~~v~l~vnd~~~~v~~~ 87 (230)
T 1rpx_A 24 KLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPIT----------------DLPLDVHLMIVEPDQRVPDF 87 (230)
T ss_dssp GHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHGGGC----------------CSCEEEEEESSSHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEeeccCCcccccccCHHHHHHHHhcc----------------CCcEEEEEEecCHHHHHHHH
Confidence 45788999999999975442 11 134444443321 12333455666665 33444
Q ss_pred ccccCCCCeEEEecC--CCeeechhhhhhcccCCCceEEEEc--CCHHHHHHHHHHhhcccCeEEEec
Q 025857 127 QPADGQAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAIS--KTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 127 ~~~~~~~~~vVv~~~--DWtiIPlENlIA~~q~~~~~lia~v--~~~~EA~val~~LE~G~DGVll~~ 190 (247)
. ...++.+.+... .-.- ++.++.++.+.+.++...+ .+..|+ +..+..|+|-|++.+
T Consensus 88 ~--~~Gad~v~vh~~~~~~~~--~~~~~~~~~~~g~~ig~~~~p~t~~e~---~~~~~~~~d~vl~~~ 148 (230)
T 1rpx_A 88 I--KAGADIVSVHCEQSSTIH--LHRTINQIKSLGAKAGVVLNPGTPLTA---IEYVLDAVDLVLIMS 148 (230)
T ss_dssp H--HTTCSEEEEECSTTTCSC--HHHHHHHHHHTTSEEEEEECTTCCGGG---GTTTTTTCSEEEEES
T ss_pred H--HcCCCEEEEEecCccchh--HHHHHHHHHHcCCcEEEEeCCCCCHHH---HHHHHhhCCEEEEEE
Confidence 2 246788888876 4322 3456666655455555555 344443 233446778775543
No 225
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=40.00 E-value=51 Score=31.29 Aligned_cols=55 Identities=11% Similarity=0.150 Sum_probs=35.3
Q ss_pred CCCeEEEecCCCeeechhhhhhcccCC--CceEEE-EcCCHHHHHHHHHHhhcccCeEEEe
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQGS--GKTVFA-ISKTPSEAQIFLEALEQGLGGIVLK 189 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~~--~~~lia-~v~~~~EA~val~~LE~G~DGVll~ 189 (247)
.++.++++.....--.+.++|.++... +..|++ .+.+.++|+.+. +.|+|+|.+.
T Consensus 243 G~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~---~aGaD~I~Vg 300 (496)
T 4fxs_A 243 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALI---EAGVSAVKVG 300 (496)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHH---HHTCSEEEEC
T ss_pred cCceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHH---HhCCCEEEEC
Confidence 588888887754322233445544332 334545 588998887765 6799999984
No 226
>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3
Probab=39.68 E-value=13 Score=31.50 Aligned_cols=56 Identities=7% Similarity=0.046 Sum_probs=38.2
Q ss_pred CCeeechhhhhhcccCCCceEEEE-cCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 142 DWQVIPAENIVASFQGSGKTVFAI-SKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 142 DWtiIPlENlIA~~q~~~~~lia~-v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
++..++-+.+|+.++..+.+++.- +++.++++.. .++.|+|||+ ||+|..+.++.+
T Consensus 177 ~~~~~~~~~~v~~~~~~G~~v~~wTvn~~~~~~~~--l~~~GvdgIi--TD~p~~~~~~~~ 233 (248)
T 1zcc_A 177 TPAQMRRPGIIEASRKAGLEIMVYYGGDDMAVHRE--IATSDVDYIN--LDRPDLFAAVRS 233 (248)
T ss_dssp CHHHHHSHHHHHHHHHHTCEEEEECCCCCHHHHHH--HHHSSCSEEE--ESCHHHHHHHHH
T ss_pred cHHHhCCHHHHHHHHHCCCEEEEECCCCHHHHHHH--HHHcCCCEEE--ECCHHHHHHHHH
Confidence 455553356777777666666654 5777776651 4689999977 889997766654
No 227
>2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A
Probab=39.41 E-value=23 Score=30.55 Aligned_cols=44 Identities=11% Similarity=0.123 Sum_probs=30.8
Q ss_pred hhhhhcccCCCceEEEE-cCCHHHHHHHHHHhhcccCeEEEecCCHHHHH
Q 025857 149 ENIVASFQGSGKTVFAI-SKTPSEAQIFLEALEQGLGGIVLKVEDVKAVL 197 (247)
Q Consensus 149 ENlIA~~q~~~~~lia~-v~~~~EA~val~~LE~G~DGVll~~~d~~ev~ 197 (247)
+.+|+.++..+..+++- +++.++++.+ ++.|+|||+ ||+|+.+.
T Consensus 231 ~~~v~~~~~~G~~v~~wTvn~~~~~~~l---~~~GVdgIi--TD~P~~~~ 275 (287)
T 2oog_A 231 EQNTHHLKDLGFIVHPYTVNEKADMLRL---NKYGVDGVF--TNFADKYK 275 (287)
T ss_dssp HHHHHHHHHTTCEECCBCCCSHHHHHHH---HHHTCSEEE--ESCHHHHH
T ss_pred HHHHHHHHHCCCeEEEEeCCCHHHHHHH---HHcCCCEEE--eCCHHHHH
Confidence 45667777766665543 5777776654 678999997 88898554
No 228
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=38.77 E-value=57 Score=26.34 Aligned_cols=33 Identities=9% Similarity=0.108 Sum_probs=21.0
Q ss_pred CHHHH-HHHHHHhhcccCeEEEecCCHHHHH-HHH
Q 025857 168 TPSEA-QIFLEALEQGLGGIVLKVEDVKAVL-ALK 200 (247)
Q Consensus 168 ~~~EA-~val~~LE~G~DGVll~~~d~~ev~-~l~ 200 (247)
+.+.. +..-..+++++|||++.+.+...+. .++
T Consensus 49 ~~~~~~~~~~~l~~~~~dgiIi~~~~~~~~~~~l~ 83 (277)
T 3e61_A 49 DIKKAQGYLATFVSHNCTGMISTAFNENIIENTLT 83 (277)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCEEEEecCChHHHHHHHH
Confidence 44433 3344456899999999997666554 444
No 229
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=37.81 E-value=73 Score=26.67 Aligned_cols=113 Identities=13% Similarity=0.124 Sum_probs=55.5
Q ss_pred HHHHHHhCCcEEEecC-c---chHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeEEE
Q 025857 63 MTAAVERGWNTFVFLS-E---NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (247)
Q Consensus 63 vT~ALEsG~d~~v~~~-~---~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vVv 138 (247)
+..+.+.|+|+++++. | ..+..+++-+.. ...|. -.++.+.+.++++.+... ..+++=+
T Consensus 75 ~~~~~~~Gad~Vll~~ser~l~~~e~~~~~~~a-------------~~~Gl--~~iv~v~~~~e~~~~~~~--~~~~i~~ 137 (219)
T 2h6r_A 75 AEAIKDCGCKGTLINHSEKRMLLADIEAVINKC-------------KNLGL--ETIVCTNNINTSKAVAAL--SPDCIAV 137 (219)
T ss_dssp HHHHHHHTCCEEEESBTTBCCBHHHHHHHHHHH-------------HHHTC--EEEEEESSSHHHHHHTTT--CCSEEEE
T ss_pred HHHHHHcCCCEEEECCccccCCHHHHHHHHHHH-------------HHCCC--eEEEEeCCchHHHHHHhC--CCCEEEE
Confidence 6889999999999853 1 011121111000 01122 134455555555555433 2244334
Q ss_pred ecCCC---------eeec--hhhhhhcccC--CCceEEEE--cCCHHHHHHHHHHhhcccCeEEEe-----cCCHHHH
Q 025857 139 DLPDW---------QVIP--AENIVASFQG--SGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLK-----VEDVKAV 196 (247)
Q Consensus 139 ~~~DW---------tiIP--lENlIA~~q~--~~~~lia~--v~~~~EA~val~~LE~G~DGVll~-----~~d~~ev 196 (247)
+. -| +-.| ++..++.+.. .+..+++. +++.++++. ..+.|+|||++- ++|+.++
T Consensus 138 ~~-~~~iGtG~~~~t~~~~~~~~~~~~ir~~~~~~~ii~ggGI~~~~~~~~---~~~~gaDgvlVGsAi~~~~d~~~~ 211 (219)
T 2h6r_A 138 EP-PELIGTGIPVSKANPEVVEGTVRAVKEINKDVKVLCGAGISKGEDVKA---ALDLGAEGVLLASGVVKAKNVEEA 211 (219)
T ss_dssp CC-CC--------------CSHHHHHHHHHHCTTCEEEECSSCCSHHHHHH---HHTTTCCCEEESHHHHTCSSHHHH
T ss_pred Ee-ccccccCCCCccCCHHHHHHHHHHHHhccCCCeEEEEeCcCcHHHHHH---HhhCCCCEEEEcHHHhCcccHHHH
Confidence 33 34 1112 3444443322 13445544 356777766 467899999974 5666543
No 230
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=37.66 E-value=28 Score=24.97 Aligned_cols=66 Identities=8% Similarity=0.084 Sum_probs=39.1
Q ss_pred CCCeEEEecCCCeeechhhhhhccc----CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQ----GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q----~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l 199 (247)
..+.+|++..-.. ..--.++..+. ..+..++...... +......+++.|+++++.+|-++.++.+.
T Consensus 51 ~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~~~pii~~s~~~-~~~~~~~~~~~g~~~~l~kp~~~~~l~~~ 120 (142)
T 3cg4_A 51 FSGVVLLDIMMPG-MDGWDTIRAILDNSLEQGIAIVMLTAKN-APDAKMIGLQEYVVDYITKPFDNEDLIEK 120 (142)
T ss_dssp CCEEEEEESCCSS-SCHHHHHHHHHHTTCCTTEEEEEEECTT-CCCCSSTTGGGGEEEEEESSCCHHHHHHH
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhhcccCCCCEEEEECCC-CHHHHHHHHhcCccEEEeCCCCHHHHHHH
Confidence 3566666644222 22223333332 2345666655443 23455677899999999999999877554
No 231
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=37.52 E-value=14 Score=31.65 Aligned_cols=33 Identities=15% Similarity=0.037 Sum_probs=24.0
Q ss_pred cCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 166 SKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 166 v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
+-+.++++.++ +.|+|||++...|+.-++..++
T Consensus 76 vl~~d~~~~A~---~aGAd~v~~p~~d~~v~~~ar~ 108 (224)
T 1vhc_A 76 VLTAEQVVLAK---SSGADFVVTPGLNPKIVKLCQD 108 (224)
T ss_dssp CCSHHHHHHHH---HHTCSEEECSSCCHHHHHHHHH
T ss_pred EeeHHHHHHHH---HCCCCEEEECCCCHHHHHHHHH
Confidence 34678888765 5599999998888775555554
No 232
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=37.06 E-value=16 Score=26.09 Aligned_cols=66 Identities=12% Similarity=0.188 Sum_probs=37.3
Q ss_pred CCCeEEEecCCCeeechhhhhhccc---CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQ---GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q---~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l 199 (247)
..+.++++..-.. ..--.++..++ .....++...... +......+++.|++|.+.+|-+++++.+.
T Consensus 48 ~~dlvllD~~l~~-~~g~~~~~~l~~~~~~~~~ii~ls~~~-~~~~~~~~~~~ga~~~l~KP~~~~~l~~~ 116 (130)
T 1dz3_A 48 RPDILLLDIIMPH-LDGLAVLERIRAGFEHQPNVIMLTAFG-QEDVTKKAVELGASYFILKPFDMENLAHH 116 (130)
T ss_dssp CCSEEEEESCCSS-SCHHHHHHHHHHHCSSCCEEEEEEETT-CHHHHHHHHHTTCEEEEECSSCCTTHHHH
T ss_pred CCCEEEEecCCCC-CCHHHHHHHHHhcCCCCCcEEEEecCC-CHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Confidence 3566676654221 11122333332 2233455444332 23456678899999999999998876543
No 233
>4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus}
Probab=37.04 E-value=32 Score=29.36 Aligned_cols=32 Identities=19% Similarity=0.124 Sum_probs=26.4
Q ss_pred HHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 025857 172 AQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (247)
Q Consensus 172 A~val~~LE~G~DGVll~~~d~~ev~~l~~~~ 203 (247)
-+.+-.+-|.|+||+|..+..|.+++.+++.+
T Consensus 125 ~~~a~~a~~~g~~GvV~sat~p~e~~~ir~~~ 156 (222)
T 4dbe_A 125 DYIKNVIREISPKGIVVGGTKLDHITQYRRDF 156 (222)
T ss_dssp HHHHHHHHHHCCSEEEECTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCEEEECCCCHHHHHHHHHhC
Confidence 45666677889999999998899998888764
No 234
>3qll_A Citrate lyase; beta barrel; 2.45A {Yersinia pestis}
Probab=36.78 E-value=80 Score=28.28 Aligned_cols=130 Identities=13% Similarity=0.189 Sum_probs=61.2
Q ss_pred CcEEEEEe--CchhHHHHHHHhCCcEEEecCcc------hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChh
Q 025857 50 PKRVWIWT--ESKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQ 121 (247)
Q Consensus 50 ~K~vWiW~--~~KevvT~ALEsG~d~~v~~~~~------~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e 121 (247)
...-|++. .+.+.+..|..+|+|.+++.=|| ++.+++.-.- .+. .. +..+. ..++.|.+.+
T Consensus 44 ~~Rs~L~vP~~~p~~~eka~~~gaD~vilDLEDaV~~~~k~~Ar~~l~~-~l~-----~~---~~~~~--~~~VRVn~~~ 112 (316)
T 3qll_A 44 QTRSWLFTPATRSDRFAKAAENGADVAIIDLEDSVSQADKEQARQKAIS-YLS-----SR---PATSL--PLALRINGLD 112 (316)
T ss_dssp GCCEEEEEESCC----------CCSEEEEECSTTSCGGGHHHHHHHHHC------------------C--CEEEECCCTT
T ss_pred cccEEEECCCCCHHHHHHHhhCCCCEEEEeCCCCCCCcCHHHHHHHHHH-HHh-----cc---cccCC--eEEEEECCCC
Confidence 34568877 46889999999999999975444 3334321000 000 00 00112 2455555432
Q ss_pred ------hHhhhccccCCCCeEEEecCCCeeechh---hhhhcccC--CCceEEEEcCCHHHHHHHHHHhh--cccCeEEE
Q 025857 122 ------ELQQLQPADGQAENIVIDLPDWQVIPAE---NIVASFQG--SGKTVFAISKTPSEAQIFLEALE--QGLGGIVL 188 (247)
Q Consensus 122 ------~le~a~~~~~~~~~vVv~~~DWtiIPlE---NlIA~~q~--~~~~lia~v~~~~EA~val~~LE--~G~DGVll 188 (247)
++..+...+...+.+++- ++=-.| .+.+.+.. .+..+++.+.+++-..-+-+++. -|+||+.+
T Consensus 113 t~~~~~Dl~~~l~~g~~~~gIvlP----Kvesa~~v~~~~~~l~~~~~~~~l~~~IET~~gv~~~~eIa~a~~~v~~l~~ 188 (316)
T 3qll_A 113 TRAGIEDIHALLECGSLPDYLVLP----KTESAAHLQILDRLMMFAGSDTRLIGIIESVRGLNAVESIAAATPKLAGLIF 188 (316)
T ss_dssp SHHHHHHHHHHHHSCCCCSEEEET----TCCSHHHHHHHHHHTSCC--CCEEEEEECSHHHHHTHHHHHTSCTTEEEEEE
T ss_pred CchhHHHHHHHHhCCCCCCEEEeC----CCCCHHHHHHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHHHhcCCCceEEEE
Confidence 334333222112443321 111122 22333221 24678999999999988888887 39999999
Q ss_pred ecCCHH
Q 025857 189 KVEDVK 194 (247)
Q Consensus 189 ~~~d~~ 194 (247)
-+.|..
T Consensus 189 G~~DL~ 194 (316)
T 3qll_A 189 GAADMA 194 (316)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 888654
No 235
>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1
Probab=36.42 E-value=96 Score=27.57 Aligned_cols=14 Identities=14% Similarity=0.067 Sum_probs=11.8
Q ss_pred HHHHHHHhCCcEEE
Q 025857 62 VMTAAVERGWNTFV 75 (247)
Q Consensus 62 vvT~ALEsG~d~~v 75 (247)
.+..|++.|+|++=
T Consensus 113 ~ve~a~~~GAdaV~ 126 (304)
T 1to3_A 113 NAQAVKRDGAKALK 126 (304)
T ss_dssp CHHHHHHTTCCEEE
T ss_pred hHHHHHHcCCCEEE
Confidence 37889999999864
No 236
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=35.93 E-value=45 Score=26.89 Aligned_cols=105 Identities=13% Similarity=0.166 Sum_probs=59.9
Q ss_pred hhHHHHHHHhCCcEEEecCcchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeEEEe
Q 025857 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vVv~ 139 (247)
..+.....+.|.+-+++.. +.+.++++.+-. |. ..++....+++.++.+. ...++.+|+-
T Consensus 13 ~~la~~L~~~g~~v~vid~-~~~~~~~l~~~~----------------~~-~~i~gd~~~~~~l~~a~--i~~ad~vi~~ 72 (218)
T 3l4b_C 13 YYLARSMLSRKYGVVIINK-DRELCEEFAKKL----------------KA-TIIHGDGSHKEILRDAE--VSKNDVVVIL 72 (218)
T ss_dssp HHHHHHHHHTTCCEEEEES-CHHHHHHHHHHS----------------SS-EEEESCTTSHHHHHHHT--CCTTCEEEEC
T ss_pred HHHHHHHHhCCCeEEEEEC-CHHHHHHHHHHc----------------CC-eEEEcCCCCHHHHHhcC--cccCCEEEEe
Confidence 3455556678888777653 355555432100 00 01222334555555542 2367887776
Q ss_pred cCCCeeechhhhhhcc----cCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 140 LPDWQVIPAENIVASF----QGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 140 ~~DWtiIPlENlIA~~----q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
..+- .+|+++.. .....++++.+++.+.++.+ .+.|+|-|+....
T Consensus 73 ~~~d----~~n~~~~~~a~~~~~~~~iia~~~~~~~~~~l---~~~G~d~vi~p~~ 121 (218)
T 3l4b_C 73 TPRD----EVNLFIAQLVMKDFGVKRVVSLVNDPGNMEIF---KKMGITTVLNLTT 121 (218)
T ss_dssp CSCH----HHHHHHHHHHHHTSCCCEEEECCCSGGGHHHH---HHHTCEECCCHHH
T ss_pred cCCc----HHHHHHHHHHHHHcCCCeEEEEEeCcchHHHH---HHCCCCEEECHHH
Confidence 6653 34544332 13456899999999998876 4569998775444
No 237
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A
Probab=35.93 E-value=1.2e+02 Score=26.04 Aligned_cols=33 Identities=12% Similarity=0.230 Sum_probs=25.9
Q ss_pred CchhHHHHHHHhCCcEEEecCcchHHHhhcccee
Q 025857 58 ESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIA 91 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~~~~e~~~~lg~i~ 91 (247)
+-+.++..|+|-|+++|++++...+.+. +..+.
T Consensus 42 di~~~~~~a~~~~~~av~v~~~~v~~~~-~~~~~ 74 (263)
T 1w8s_A 42 DPEYILRLARDAGFDGVVFQRGIAEKYY-DGSVP 74 (263)
T ss_dssp CHHHHHHHHHHHTCSEEEECHHHHHHHC-CSSSC
T ss_pred hHHHHHHHHHhhCCCEEEECHHHHHHhh-cCCCc
Confidence 4589999999999999999877666665 54444
No 238
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria}
Probab=35.37 E-value=49 Score=27.86 Aligned_cols=30 Identities=17% Similarity=0.143 Sum_probs=25.7
Q ss_pred CCCcEEEEEeC-----chhHHHHHHHhCCcEEEec
Q 025857 48 SKPKRVWIWTE-----SKQVMTAAVERGWNTFVFL 77 (247)
Q Consensus 48 ~~~K~vWiW~~-----~KevvT~ALEsG~d~~v~~ 77 (247)
.+-+.||+|+- +++.+...++.|+|+|+..
T Consensus 210 ~~G~~v~~wTv~~~~n~~~~~~~l~~~GvdgI~TD 244 (258)
T 2o55_A 210 EKGLSVTVWMPWIFDDSEEDWKKCLELQVDLICSN 244 (258)
T ss_dssp HTTCEEEEECCTTCCCCHHHHHHHHHHTCSEEEES
T ss_pred HCCCEEEEeeCCCCCCCHHHHHHHHHcCCCEEEeC
Confidence 45678999996 6889999999999999874
No 239
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=34.75 E-value=1.2e+02 Score=23.57 Aligned_cols=33 Identities=15% Similarity=0.402 Sum_probs=24.6
Q ss_pred HHHHHHHhhcccCeEEEec---CCHHHHHHHHHhhc
Q 025857 172 AQIFLEALEQGLGGIVLKV---EDVKAVLALKEYFD 204 (247)
Q Consensus 172 A~val~~LE~G~DGVll~~---~d~~ev~~l~~~~~ 204 (247)
......+++.|+++++.+| +...-+..+.+.+.
T Consensus 65 ~~~~~~~~~~Ga~~~l~kp~~~~~~~l~~~i~~~~~ 100 (237)
T 3cwo_X 65 QAMVIEAIKAGAKDFIVNTAAVENPSLITQIAQTFG 100 (237)
T ss_dssp HHHHHHHHHTTCCEEEESHHHHHCTHHHHHHHHHHT
T ss_pred HHHHHHHHHCCHHheEeCCcccChHHHHHHHHHHhC
Confidence 4556788899999999998 66666666666554
No 240
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria}
Probab=33.71 E-value=53 Score=27.60 Aligned_cols=50 Identities=12% Similarity=0.129 Sum_probs=33.7
Q ss_pred CeeechhhhhhcccCCCceEEEE-c----CCHHHHHHHHHHhhcccCeEEEecCCHHHHHH
Q 025857 143 WQVIPAENIVASFQGSGKTVFAI-S----KTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (247)
Q Consensus 143 WtiIPlENlIA~~q~~~~~lia~-v----~~~~EA~val~~LE~G~DGVll~~~d~~ev~~ 198 (247)
+..++ +.+|+.++..+.++++- + ++.++++.+ ++.|+|||+ ||+|..+.+
T Consensus 197 ~~~~~-~~~v~~~~~~G~~v~~wTv~~~~n~~~~~~~l---~~~GvdgI~--TD~p~~~~~ 251 (258)
T 2o55_A 197 FHYLT-KEQVCTAHEKGLSVTVWMPWIFDDSEEDWKKC---LELQVDLIC--SNYPFGLMN 251 (258)
T ss_dssp GGGCC-HHHHHHHHHTTCEEEEECCTTCCCCHHHHHHH---HHHTCSEEE--ESCHHHHHH
T ss_pred hhhcC-HHHHHHHHHCCCEEEEeeCCCCCCCHHHHHHH---HHcCCCEEE--eCCHHHHHH
Confidence 44444 45677777777666654 4 677776654 679999977 788885543
No 241
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=33.64 E-value=39 Score=24.77 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=26.7
Q ss_pred eEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 161 TVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 161 ~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
.++....+. +......+++.|+++.+.+|-+++++.+.-.
T Consensus 92 pii~~s~~~-~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~ 131 (143)
T 3m6m_D 92 PVVVLSADV-TPEAIRACEQAGARAFLAKPVVAAKLLDTLA 131 (143)
T ss_dssp CEEEEESCC-CHHHHHHHHHTTCSEEEESSCCHHHHHHHHH
T ss_pred eEEEEeCCC-CHHHHHHHHHcChhheeeCCCCHHHHHHHHH
Confidence 444444332 2234567789999999999999997654433
No 242
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=33.62 E-value=38 Score=24.00 Aligned_cols=68 Identities=13% Similarity=0.069 Sum_probs=37.5
Q ss_pred CCCeEEEecCCCeeechhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~--~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
..+.++++..-.. ..--.++..++. ....++......+ ......+++.|++|++.+|-++.++...-+
T Consensus 47 ~~dlvl~D~~l~~-~~g~~~~~~l~~~~~~~~ii~~s~~~~-~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~ 116 (136)
T 1mvo_A 47 KPDLIVLDVMLPK-LDGIEVCKQLRQQKLMFPILMLTAKDE-EFDKVLGLELGADDYMTKPFSPREVNARVK 116 (136)
T ss_dssp CCSEEEEESSCSS-SCHHHHHHHHHHTTCCCCEEEEECTTC-CCCHHHHHHTTCCEEEESSCCHHHHHHHHH
T ss_pred CCCEEEEecCCCC-CCHHHHHHHHHcCCCCCCEEEEECCCC-HHHHHHHHhCCCCEEEECCCCHHHHHHHHH
Confidence 3466666543222 111223333322 2344555544322 234456789999999999999987755433
No 243
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=32.39 E-value=30 Score=27.27 Aligned_cols=42 Identities=29% Similarity=0.333 Sum_probs=29.4
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecC-CHHHHHHHHH
Q 025857 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE-DVKAVLALKE 201 (247)
Q Consensus 159 ~~~lia~v~~~~EA~val~~LE~G~DGVll~~~-d~~ev~~l~~ 201 (247)
+..++...... +......+++.|++|.+.+|- +++++.+.-+
T Consensus 68 ~~~ii~lt~~~-~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~ 110 (223)
T 2hqr_A 68 SIVVLVSSDNP-TSEEEVHAFEQGADDYIAKPYRSIKALVARIE 110 (223)
T ss_dssp TSEEEEEESSC-CHHHHHHHHHHTCSEEEETTCSCTHHHHHHHH
T ss_pred CCcEEEEECCC-CHHHHHHHHHcCCCEEEECCCCCHHHHHHHHH
Confidence 45566555432 334566788999999999999 9987755443
No 244
>2aam_A Hypothetical protein TM1410; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE UNL; 2.20A {Thermotoga maritima} SCOP: c.1.8.15
Probab=31.85 E-value=97 Score=27.88 Aligned_cols=77 Identities=13% Similarity=0.073 Sum_probs=40.4
Q ss_pred cCCCCeEEEEEEecChhhHhhhccccCCCCeEEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHH----HHHHhh
Q 025857 105 DSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQI----FLEALE 180 (247)
Q Consensus 105 ~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~v----al~~LE 180 (247)
+..|+++-.|+.+-.-|+-.. ++ ...|+.+|-.-|.....+=++.-+.-+.+++==.+ +=.+++
T Consensus 66 ~~~G~~viaYlSvGe~E~~R~--------y~----~~~w~~~~~~~lg~~n~~W~ge~~vDi~~~~w~~i~~~rl~~~~~ 133 (309)
T 2aam_A 66 VDAGVVPVAYVNIGQAEDYRF--------YW----KESWYTNTPEWLGEEDPAWPGNYFVKYWYNEWKEIVFSYLDRVID 133 (309)
T ss_dssp HHTTCEEEEEEESSEEETTST--------TC----CTHHHHSCCTTEEEEETTEEEEEEECTTSHHHHHHHHHHHHHHHH
T ss_pred HhCCCEEEEEEecccccccch--------hh----hhccccCCHHHhCccCCCCCCceEEecCCHHHHHHHHHHHHHHHH
Confidence 345777777877755443110 00 11222255555554433323344445555431111 126778
Q ss_pred cccCeEEEecCCH
Q 025857 181 QGLGGIVLKVEDV 193 (247)
Q Consensus 181 ~G~DGVll~~~d~ 193 (247)
+|.|||-|++=|.
T Consensus 134 kG~DGvflDnvD~ 146 (309)
T 2aam_A 134 QGFKGIYLDRIDS 146 (309)
T ss_dssp TTCSEEEEECTTH
T ss_pred cCCCeEeecccch
Confidence 9999999998763
No 245
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A
Probab=31.80 E-value=48 Score=32.13 Aligned_cols=38 Identities=11% Similarity=0.251 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHhhcccCeEEEe-cCCHHHHHHHHHhhcc
Q 025857 168 TPSEAQIFLEALEQGLGGIVLK-VEDVKAVLALKEYFDG 205 (247)
Q Consensus 168 ~~~EA~val~~LE~G~DGVll~-~~d~~ev~~l~~~~~~ 205 (247)
+..|..-...+|+.|+|||+++ .++++++.++++++..
T Consensus 192 t~~D~~DI~~~l~~g~d~I~lpfV~saeDv~~~~~~l~~ 230 (500)
T 1a3w_A 192 SEKDKEDLRFGVKNGVHMVFASFIRTANDVLTIREVLGE 230 (500)
T ss_dssp CHHHHHHHHHHHHHTCSEEEECSCCSHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHh
Confidence 4456666677899999999998 5889999999999865
No 246
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Probab=31.78 E-value=67 Score=29.22 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHhhcccCeEEEecCC------HHHHHHHHHhhc
Q 025857 167 KTPSEAQIFLEALEQGLGGIVLKVED------VKAVLALKEYFD 204 (247)
Q Consensus 167 ~~~~EA~val~~LE~G~DGVll~~~d------~~ev~~l~~~~~ 204 (247)
..++=.+.|+-+.+.|+|||.++++. -.++..|++.+.
T Consensus 51 ~~PDpv~aA~~ae~aGAdGITvHlReDrRHI~d~Dv~~L~~~i~ 94 (278)
T 3gk0_A 51 AYPDPVRAALAAEDAGADAITLHLREDRRHIVDADVRTLRPRVK 94 (278)
T ss_dssp SCSCHHHHHHHHHHTTCSEEEEECCTTCSSSCHHHHHHHHHHCS
T ss_pred CCCCHHHHHHHHHHcCCCEEEeccCCCcccCCHHHHHHHHHHcC
Confidence 34555667788889999999998764 678888888765
No 247
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=31.72 E-value=18 Score=30.57 Aligned_cols=30 Identities=13% Similarity=-0.041 Sum_probs=22.0
Q ss_pred cCCHHHHHHHHHHhhcccCeEEEecCCHHHHHH
Q 025857 166 SKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (247)
Q Consensus 166 v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~ 198 (247)
+-+.++++.++ +.|+|||++...|++-+..
T Consensus 75 vi~~d~~~~A~---~aGAd~v~~p~~d~~v~~~ 104 (214)
T 1wbh_A 75 VLNPQQLAEVT---EAGAQFAISPGLTEPLLKA 104 (214)
T ss_dssp CCSHHHHHHHH---HHTCSCEEESSCCHHHHHH
T ss_pred EEEHHHHHHHH---HcCCCEEEcCCCCHHHHHH
Confidence 45678888765 5599999988777764433
No 248
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=31.66 E-value=89 Score=30.22 Aligned_cols=99 Identities=16% Similarity=0.159 Sum_probs=56.7
Q ss_pred hhHHHHHHHhCCcEEEecCcc------hHHHhhccceeEE--eeeeecCCceecCCCCeEEEEEEecChhhHhhhccccC
Q 025857 60 KQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALL--DPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG 131 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~~~------~e~~~~lg~i~~i--~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~ 131 (247)
.+.+..|++.|++.|-++.-+ .++++++..+..- .|+++| |.-++-...
T Consensus 28 ~~~ve~al~~Gv~~vQlR~K~~~~~~~~~~a~~l~~l~~~~~v~liIN-------------------D~~dlA~~~---- 84 (540)
T 3nl6_A 28 YGQVEAGLQNGVTLVQIREKDADTKFFIEEALQIKELCHAHNVPLIIN-------------------DRIDVAMAI---- 84 (540)
T ss_dssp HHHHHHHHHTTCSEEEECCSSSCTTHHHHHHHHHHHHHHHTTCCEEEC-------------------SCSHHHHHT----
T ss_pred HHHHHHHHHCCCCEEEEecCCCCHHHHHHHHHHHHHHHHhcCCEEEEe-------------------CcHHHHHHc----
Confidence 588999999999998885311 3344443333220 123333 322222222
Q ss_pred CCCeEEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcc---cCeEEE
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQG---LGGIVL 188 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G---~DGVll 188 (247)
.++-|=+...|- |+..+-..+ +.+..|-.-+++.+||+.+ .+.| +|-|.+
T Consensus 85 gAdGVHLgq~dl---~~~~ar~~l-g~~~iiG~S~ht~eea~~A---~~~G~~~aDYv~~ 137 (540)
T 3nl6_A 85 GADGIHVGQDDM---PIPMIRKLV-GPDMVIGWSVGFPEEVDEL---SKMGPDMVDYIGV 137 (540)
T ss_dssp TCSEEEECTTSS---CHHHHHHHH-CTTSEEEEEECSHHHHHHH---HHTCC--CCEEEE
T ss_pred CCCEEEEChhhc---CHHHHHHHh-CCCCEEEEECCCHHHHHHH---HHcCCCCCCEEEE
Confidence 345555555554 444433322 3455677778999998765 4678 999998
No 249
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=31.62 E-value=73 Score=24.51 Aligned_cols=65 Identities=14% Similarity=0.178 Sum_probs=37.8
Q ss_pred CCCeEEEecCCCe--eechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 025857 132 QAENIVIDLPDWQ--VIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (247)
Q Consensus 132 ~~~~vVv~~~DWt--iIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l 199 (247)
..+.++++..-+. -+ +...+.... .+..++......+ ...+..+++.|++|.+.+|-++.++...
T Consensus 52 ~~dlvl~D~~mp~~~g~-l~~~~~~~~-~~~~ii~lt~~~~-~~~~~~a~~~ga~~~l~KP~~~~~L~~~ 118 (196)
T 1qo0_D 52 PVDVVFTSIFQNRHHDE-IAALLAAGT-PRTTLVALVEYES-PAVLSQIIELECHGVITQPLDAHRVLPV 118 (196)
T ss_dssp CCSEEEEECCSSTHHHH-HHHHHHHSC-TTCEEEEEECCCS-HHHHHHHHHHTCSEEEESSCCGGGHHHH
T ss_pred CCCEEEEeCCCCccchH-HHHHHhccC-CCCCEEEEEcCCC-hHHHHHHHHcCCCeeEecCcCHHHHHHH
Confidence 3456666543221 12 333333321 3455665554322 3366778899999999999998766443
No 250
>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A
Probab=31.51 E-value=2e+02 Score=25.96 Aligned_cols=73 Identities=11% Similarity=0.065 Sum_probs=49.5
Q ss_pred CCCeEEEecCCC----------eeechhhhhhcc---------cCCCceEEEEcCCH-----HHHH-HHHHHhhcccCeE
Q 025857 132 QAENIVIDLPDW----------QVIPAENIVASF---------QGSGKTVFAISKTP-----SEAQ-IFLEALEQGLGGI 186 (247)
Q Consensus 132 ~~~~vVv~~~DW----------tiIPlENlIA~~---------q~~~~~lia~v~~~-----~EA~-val~~LE~G~DGV 186 (247)
.+.-+-|+...| +++|.|..++.+ .+.+.-|+|..... +||- -+.--.|.|+|+|
T Consensus 116 Gaagv~iEDq~~~k~cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~~gldeAi~Ra~ay~eAGAD~i 195 (307)
T 3lye_A 116 GVAGAHLEDQILTKRCGHLSGKKVVSRDEYLVRIRAAVATKRRLRSDFVLIARTDALQSLGYEECIERLRAARDEGADVG 195 (307)
T ss_dssp TCCEEEECCBCCCC--------CBCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEE
T ss_pred CCeEEEEcCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEEechhhhccCHHHHHHHHHHHHHCCCCEE
Confidence 455566776655 489998866554 14566788887653 3443 3334478999999
Q ss_pred EEe-cCCHHHHHHHHHhhc
Q 025857 187 VLK-VEDVKAVLALKEYFD 204 (247)
Q Consensus 187 ll~-~~d~~ev~~l~~~~~ 204 (247)
.+. ..++++++++.+.+.
T Consensus 196 fi~~~~~~~~~~~i~~~~~ 214 (307)
T 3lye_A 196 LLEGFRSKEQAAAAVAALA 214 (307)
T ss_dssp EECCCSCHHHHHHHHHHHT
T ss_pred EecCCCCHHHHHHHHHHcc
Confidence 986 367888888877664
No 251
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=31.04 E-value=45 Score=29.06 Aligned_cols=76 Identities=17% Similarity=0.145 Sum_probs=43.2
Q ss_pred ChhhHhhhccccC--CCCeEEEecCCCeeechhhhhhcccCC--CceEE--EEcCCHHHHHHHHHHhhcccCeEEEec--
Q 025857 119 TPQELQQLQPADG--QAENIVIDLPDWQVIPAENIVASFQGS--GKTVF--AISKTPSEAQIFLEALEQGLGGIVLKV-- 190 (247)
Q Consensus 119 ~~e~le~a~~~~~--~~~~vVv~~~DWtiIPlENlIA~~q~~--~~~li--a~v~~~~EA~val~~LE~G~DGVll~~-- 190 (247)
+++.+...+..+. ...++-++..+ +-+...+|+++.+. +..++ ..++|+++|+. +++ |+|||++-+
T Consensus 140 ~~~~~~~~a~~g~~~~~~~VYl~s~G--~~~~~~~i~~i~~~~~~~Pv~vGgGI~t~e~a~~---~~~-gAd~VIVGSa~ 213 (240)
T 1viz_A 140 NMDDIVAYARVSELLQLPIFYLEYSG--VLGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQ---YAE-HADVIVVGNAV 213 (240)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECTT--SCCCHHHHHHHHHTCSSSEEEEESSCCSHHHHHH---HHT-TCSEEEECTHH
T ss_pred CHHHHHHHHHhCcccCCCEEEEeCCC--ccChHHHHHHHHHhcCCCCEEEEeccCCHHHHHH---HHh-CCCEEEEChHH
Confidence 4454444443331 22444444433 34566676665432 23333 34689999987 467 999999988
Q ss_pred -CCHH-HHHHHH
Q 025857 191 -EDVK-AVLALK 200 (247)
Q Consensus 191 -~d~~-ev~~l~ 200 (247)
++++ -+++++
T Consensus 214 v~~~~~~~~~v~ 225 (240)
T 1viz_A 214 YEDFDRALKTVA 225 (240)
T ss_dssp HHCHHHHHTHHH
T ss_pred HhCHHHHHHHHH
Confidence 5565 455533
No 252
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=30.53 E-value=29 Score=29.02 Aligned_cols=35 Identities=6% Similarity=0.100 Sum_probs=25.9
Q ss_pred cCCHHHHHHHHHHhhcccCeEEEecC---CHHHHHHHHHhh
Q 025857 166 SKTPSEAQIFLEALEQGLGGIVLKVE---DVKAVLALKEYF 203 (247)
Q Consensus 166 v~~~~EA~val~~LE~G~DGVll~~~---d~~ev~~l~~~~ 203 (247)
++++++++.++ +.|+|+|++-+. ||+.+.++.+.+
T Consensus 88 i~~~~~~~~~l---~~Gad~V~ig~~~l~dp~~~~~~~~~~ 125 (247)
T 3tdn_A 88 AGKMEHFLEAF---LRGADKVSINTAAVENPSLITQIAQTF 125 (247)
T ss_dssp CCSHHHHHHHH---HTTCSEECCSHHHHHCTHHHHHHHHHH
T ss_pred CCCHHHHHHHH---HcCCCeeehhhHHhhChHHHHHHHHHh
Confidence 57888887765 679999999884 666666665544
No 253
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=30.43 E-value=2.6e+02 Score=23.99 Aligned_cols=128 Identities=12% Similarity=0.139 Sum_probs=73.4
Q ss_pred CchhHHHHHHHhCCcEEEecC-----------cchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhh
Q 025857 58 ESKQVMTAAVERGWNTFVFLS-----------ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQL 126 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~-----------~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a 126 (247)
+.++++..+-+.|++.|.+.. +..+.++.+.+ ..+.+++++. .+.++++.+
T Consensus 27 ~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~~~~e~~~~i~~----------------~~~~~v~~l~--~n~~~i~~a 88 (295)
T 1ydn_A 27 DKIALINRLSDCGYARIEATSFVSPKWVPQLADSREVMAGIRR----------------ADGVRYSVLV--PNMKGYEAA 88 (295)
T ss_dssp HHHHHHHHHTTTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCC----------------CSSSEEEEEC--SSHHHHHHH
T ss_pred HHHHHHHHHHHcCcCEEEEccCcCccccccccCHHHHHHHHHh----------------CCCCEEEEEe--CCHHHHHHH
Confidence 357788888889999988632 11233333221 1244555554 567777776
Q ss_pred ccccCCCCeEEEecCCC-------eeechh-hh------hhcccCCCceEEE-----------EcCCHHHHHHHHH-Hhh
Q 025857 127 QPADGQAENIVIDLPDW-------QVIPAE-NI------VASFQGSGKTVFA-----------ISKTPSEAQIFLE-ALE 180 (247)
Q Consensus 127 ~~~~~~~~~vVv~~~DW-------tiIPlE-Nl------IA~~q~~~~~lia-----------~v~~~~EA~val~-~LE 180 (247)
... ..+.+-+...-+ ..-+.| |+ |..+...+.++-+ .-.+++++.-+++ +.|
T Consensus 89 ~~~--G~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~ 166 (295)
T 1ydn_A 89 AAA--HADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFS 166 (295)
T ss_dssp HHT--TCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHH
T ss_pred HHC--CCCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHh
Confidence 543 345555553333 012333 22 4444444444431 1347888776665 568
Q ss_pred cccCeEEEe----cCCHHHHHHHHHhhcc
Q 025857 181 QGLGGIVLK----VEDVKAVLALKEYFDG 205 (247)
Q Consensus 181 ~G~DGVll~----~~d~~ev~~l~~~~~~ 205 (247)
.|+|-+-|. .-.|.++.++-+.+.+
T Consensus 167 ~G~d~i~l~Dt~G~~~P~~~~~lv~~l~~ 195 (295)
T 1ydn_A 167 LGCHEVSLGDTIGRGTPDTVAAMLDAVLA 195 (295)
T ss_dssp HTCSEEEEEETTSCCCHHHHHHHHHHHHT
T ss_pred cCCCEEEecCCCCCcCHHHHHHHHHHHHH
Confidence 999999887 2358888777666643
No 254
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=30.18 E-value=59 Score=27.78 Aligned_cols=126 Identities=14% Similarity=0.209 Sum_probs=65.2
Q ss_pred hhHHHHHHHhCCcEEEecCcc-hHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeEEE
Q 025857 60 KQVMTAAVERGWNTFVFLSEN-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (247)
Q Consensus 60 KevvT~ALEsG~d~~v~~~~~-~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vVv 138 (247)
...+..+.+.|+|.+.|..|. -....+ -+ +..++.|.++++.....++. +.+.......|++.+
T Consensus 70 ~~~i~~~~~aGAd~itvh~Ea~~~~~~~--~i-----------~~i~~~G~k~gv~lnp~tp~--~~~~~~l~~~D~Vlv 134 (231)
T 3ctl_A 70 QDYIAQLARAGADFITLHPETINGQAFR--LI-----------DEIRRHDMKVGLILNPETPV--EAMKYYIHKADKITV 134 (231)
T ss_dssp GGTHHHHHHHTCSEEEECGGGCTTTHHH--HH-----------HHHHHTTCEEEEEECTTCCG--GGGTTTGGGCSEEEE
T ss_pred HHHHHHHHHcCCCEEEECcccCCccHHH--HH-----------HHHHHcCCeEEEEEECCCcH--HHHHHHHhcCCEEEE
Confidence 345899999999999886432 000000 00 11234566766666555542 333333346788765
Q ss_pred e-----cCCCeeec--hhhh---hhccc--CCCceEEEEcC--CHHHHHHHHHHhhcccCeEEEe-c-----CC-H-HHH
Q 025857 139 D-----LPDWQVIP--AENI---VASFQ--GSGKTVFAISK--TPSEAQIFLEALEQGLGGIVLK-V-----ED-V-KAV 196 (247)
Q Consensus 139 ~-----~~DWtiIP--lENl---IA~~q--~~~~~lia~v~--~~~EA~val~~LE~G~DGVll~-~-----~d-~-~ev 196 (247)
- |.+-+.|| ++.| -+... +.+. .|.+-. +.+. +-.+.+.|+|+++.- + +| + +.+
T Consensus 135 msV~pGfggQ~f~~~~l~kI~~lr~~~~~~~~~~-~I~VdGGI~~~~---~~~~~~aGAd~~V~G~saif~~~d~~~~~~ 210 (231)
T 3ctl_A 135 MTVDPGFAGQPFIPEMLDKLAELKAWREREGLEY-EIEVDGSCNQAT---YEKLMAAGADVFIVGTSGLFNHAENIDEAW 210 (231)
T ss_dssp ESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCC-EEEEESCCSTTT---HHHHHHHTCCEEEECTTTTGGGCSSHHHHH
T ss_pred eeeccCcCCccccHHHHHHHHHHHHHHhccCCCc-eEEEECCcCHHH---HHHHHHcCCCEEEEccHHHhCCCCcHHHHH
Confidence 3 22334554 3322 11111 1122 233333 3333 334578899999998 3 35 5 446
Q ss_pred HHHHHhhc
Q 025857 197 LALKEYFD 204 (247)
Q Consensus 197 ~~l~~~~~ 204 (247)
++|++.++
T Consensus 211 ~~l~~~~~ 218 (231)
T 3ctl_A 211 RIMTAQIL 218 (231)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66766554
No 255
>3rlg_A Sphingomyelin phosphodiesterase D lisictox-alphai; TIM beta/alpha-barrel, PLC-like phosphodiesterase, inactive H12A phospholipase D; HET: PGE; 1.60A {Loxosceles intermedia} PDB: 3rlh_A*
Probab=29.95 E-value=46 Score=30.48 Aligned_cols=55 Identities=15% Similarity=0.192 Sum_probs=33.6
Q ss_pred CCCeeechhhh---hhcccCCC---ceEEE-EcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 025857 141 PDWQVIPAENI---VASFQGSG---KTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (247)
Q Consensus 141 ~DWtiIPlENl---IA~~q~~~---~~lia-~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~ 200 (247)
..|...|.+-+ |..-+... .+|++ .|++.++++.+ ++.|||||+ |+.|+.+.++.
T Consensus 217 tnC~~r~~~rl~~ai~~RDs~~~~i~~V~vWTVNd~~~m~~l---~~~GVDGII--TD~Pd~l~~~l 278 (302)
T 3rlg_A 217 TNCLPRGLSRVNAAVANRDSANGFINKVYYWTVDKRSTTRDA---LDAGVDGIM--TNYPDVITDVL 278 (302)
T ss_dssp CTTSCCCSHHHHHHHHHHTSTTCCCSEEEEECCCSHHHHHHH---HHTTCSEEE--ESCHHHHHHHH
T ss_pred ccceeccHHHHHHHHHhccCCCCceEEEEEEeCCCHHHHHHH---HHcCCCEEE--CCCHHHHHHHH
Confidence 35667777444 33322222 13333 35787777665 579999999 88898665443
No 256
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=29.90 E-value=92 Score=24.65 Aligned_cols=43 Identities=12% Similarity=0.057 Sum_probs=28.8
Q ss_pred CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 158 SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 158 ~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
.+..++......+ ......+++.|++|.+.+|-++.++.+.-+
T Consensus 82 ~~~~ii~lt~~~~-~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~ 124 (225)
T 3klo_A 82 PDAKEVIINCPQD-IEHKLLFKWNNLAGVFYIDDDMDTLIKGMS 124 (225)
T ss_dssp TTCEEEEEEECTT-CCHHHHTTSTTEEEEEETTCCHHHHHHHHH
T ss_pred CCCcEEEEECCcc-hhHHHHHHHhCCCEEEecCCCHHHHHHHHH
Confidence 3455555443322 224567789999999999999997765433
No 257
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=29.78 E-value=65 Score=28.66 Aligned_cols=67 Identities=18% Similarity=0.169 Sum_probs=37.2
Q ss_pred ChhhHhhhcccc---CCCCeEEEecCCCeeechhhhhhcccCC--CceEEEE-cCCHHHHHHHHHHhhcccCeEEE
Q 025857 119 TPQELQQLQPAD---GQAENIVIDLPDWQVIPAENIVASFQGS--GKTVFAI-SKTPSEAQIFLEALEQGLGGIVL 188 (247)
Q Consensus 119 ~~e~le~a~~~~---~~~~~vVv~~~DWtiIPlENlIA~~q~~--~~~lia~-v~~~~EA~val~~LE~G~DGVll 188 (247)
++++++.+.... ...+++.++...=.--+...+|+.+.+. ..-++.. +.+.++|+.+. +.|+|+|++
T Consensus 104 ~~~~~~~a~~~~~~g~~~~~i~i~~~~G~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~---~aGad~Ivv 176 (336)
T 1ypf_A 104 KEDEYEFVQQLAAEHLTPEYITIDIAHGHSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELE---NAGADATKV 176 (336)
T ss_dssp SHHHHHHHHHHHHTTCCCSEEEEECSSCCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHH---HHTCSEEEE
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCCcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHH---HcCCCEEEE
Confidence 345555543222 2267766654210112334455554332 2456666 78888887654 789999999
No 258
>3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A
Probab=29.76 E-value=43 Score=28.50 Aligned_cols=31 Identities=16% Similarity=0.052 Sum_probs=25.2
Q ss_pred HHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 025857 173 QIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (247)
Q Consensus 173 ~val~~LE~G~DGVll~~~d~~ev~~l~~~~ 203 (247)
+++-.+.|.|+||+|..+..|.+++.+++.+
T Consensus 119 ~~a~~a~~~G~~GvV~sat~~~e~~~ir~~~ 149 (215)
T 3ve9_A 119 YLREVARRVNPKGFVAPATRPSMISRVKGDF 149 (215)
T ss_dssp HHHHHHHHHCCSEEECCTTSHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCceeeCCCCHHHHHHHHHhC
Confidence 4555667889999999988888888888764
No 259
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=29.68 E-value=76 Score=23.00 Aligned_cols=66 Identities=12% Similarity=0.070 Sum_probs=34.6
Q ss_pred CCCeEEEecCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q--~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l 199 (247)
..+.++++..-+. +.--.++..++ .....++...... +...+..+++.|+++.+.+|-+++++.+.
T Consensus 49 ~~dlvllD~~lp~-~~g~~l~~~l~~~~~~~~ii~ls~~~-~~~~~~~~~~~ga~~~l~KP~~~~~L~~~ 116 (141)
T 3cu5_A 49 PPNVLLTDVRMPR-MDGIELVDNILKLYPDCSVIFMSGYS-DKEYLKAAIKFRAIRYVEKPIDPSEIMDA 116 (141)
T ss_dssp CCSEEEEESCCSS-SCHHHHHHHHHHHCTTCEEEEECCST-TTCCC------CCCEEECSSCCHHHHHHH
T ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCcEEEEeCCC-cHHHHHHHHhCCccEEEeCCCCHHHHHHH
Confidence 4577776654222 22223343332 2345666655433 33455678899999999999999876543
No 260
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A*
Probab=29.61 E-value=22 Score=35.31 Aligned_cols=62 Identities=16% Similarity=0.203 Sum_probs=48.1
Q ss_pred CCCCeEEEecC--CCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 025857 131 GQAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (247)
Q Consensus 131 ~~~~~vVv~~~--DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ 194 (247)
...||+.+.|- -=.+.-+.+++.+.. .+..|++-..+.+--+-+=++++. +|||++.+.|.+
T Consensus 205 ~~vD~Ia~SFVr~a~Dv~~~r~~l~~~~-~~i~IiaKIE~~eav~nldeIl~~-sDGImVARGDLg 268 (606)
T 3t05_A 205 ENVDFIAASFVRRPSDVLEIREILEEQK-ANISVFPKIENQEGIDNIEEILEV-SDGLMVARGDMG 268 (606)
T ss_dssp TTCSEEEETTCCSHHHHHHHHHHHHHTT-CCCEEEECCCSHHHHHTHHHHHHH-CSCEEEEHHHHH
T ss_pred cCCCEEEECCCCCHHHHHHHHHHHHhcC-CCCeEEEEeCCHHHHHhHHHHHHh-CCEEEEcccccc
Confidence 36788888873 234666777887754 478899999999998888899998 999999877643
No 261
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus}
Probab=29.54 E-value=53 Score=32.39 Aligned_cols=38 Identities=24% Similarity=0.353 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHhhcccCeEEEe-cCCHHHHHHHHHhhcc
Q 025857 168 TPSEAQIFLEALEQGLGGIVLK-VEDVKAVLALKEYFDG 205 (247)
Q Consensus 168 ~~~EA~val~~LE~G~DGVll~-~~d~~ev~~l~~~~~~ 205 (247)
+..|.....-+|+.|+|+|.++ .+++++++++++++++
T Consensus 172 tekD~~di~~~l~~g~d~v~~sfV~~a~dv~~~~~~l~~ 210 (587)
T 2e28_A 172 TEKDRADILFGIRQGIDFIAASFVRRASDVLEIRELLEA 210 (587)
T ss_dssp CHHHHHHHHHHHHHTCSEEEESSCCSHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHH
Confidence 4567777778999999999998 6889999999999864
No 262
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=29.47 E-value=35 Score=28.49 Aligned_cols=64 Identities=17% Similarity=0.133 Sum_probs=35.8
Q ss_pred CCCeEEEecCCCeeechhhhhhcccCCCceE-EEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQGSGKTV-FAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~~~~~l-ia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
..+.+-+..++.. ....++.+...+..+ +..+-+.++++.++ +.|+|||++...|..-++..+.
T Consensus 38 Gv~~iel~~k~~~---~~~~i~~~~~~~~~~gag~vl~~d~~~~A~---~~GAd~v~~~~~d~~v~~~~~~ 102 (207)
T 2yw3_A 38 GVGALEITLRTEK---GLEALKALRKSGLLLGAGTVRSPKEAEAAL---EAGAAFLVSPGLLEEVAALAQA 102 (207)
T ss_dssp TCCEEEEECSSTH---HHHHHHHHTTSSCEEEEESCCSHHHHHHHH---HHTCSEEEESSCCHHHHHHHHH
T ss_pred CCCEEEEeCCChH---HHHHHHHHhCCCCEEEeCeEeeHHHHHHHH---HcCCCEEEcCCCCHHHHHHHHH
Confidence 4666555555443 334555544421111 12234667777775 5599999988777665544444
No 263
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=29.21 E-value=3.1e+02 Score=24.44 Aligned_cols=108 Identities=14% Similarity=0.051 Sum_probs=60.8
Q ss_pred CchhHHHHHHHhCCcEEEecC----c-----------chHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhh
Q 025857 58 ESKQVMTAAVERGWNTFVFLS----E-----------NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQE 122 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~----~-----------~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~ 122 (247)
.+.+....+-+.|++++.|-. + +.+.+++..+. -+.++-....+..-++
T Consensus 29 ~~~e~A~~ye~~GA~~lsvLe~~~~Di~~~~g~~R~~~~~~i~~i~~~----------------v~iPvl~k~~i~~ide 92 (297)
T 4adt_A 29 KNVEQAKIAEKAGAIGVMILENIPSELRNTDGVARSVDPLKIEEIRKC----------------ISINVLAKVRIGHFVE 92 (297)
T ss_dssp SSHHHHHHHHHHTCSEEEECCCCC-----CCCCCCCCCHHHHHHHHTT----------------CCSEEEEEEETTCHHH
T ss_pred CcHHHHHHHHHcCCCEEEEecCCCCcchhcCCcccCCCHHHHHHHHHh----------------cCCCEEEeccCCcHHH
Confidence 567889999999999987751 1 12222222111 0112222222222333
Q ss_pred HhhhccccCCCCeEEEecCCCeeechhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 025857 123 LQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (247)
Q Consensus 123 le~a~~~~~~~~~vVv~~~DWtiIPlENlIA~~q~--~~~~lia~v~~~~EA~val~~LE~G~DGVll~~ 190 (247)
.+.+. ...+|.| +.. ...++..++..++. .+..+++.++|.+||+.++ +.|+|-|...-
T Consensus 93 ~qil~--aaGAD~I--d~s--~~~~~~~li~~i~~~~~g~~vvv~v~~~~Ea~~a~---~~Gad~I~v~g 153 (297)
T 4adt_A 93 AQILE--ELKVDML--DES--EVLTMADEYNHINKHKFKTPFVCGCTNLGEALRRI---SEGASMIRTKG 153 (297)
T ss_dssp HHHHH--HTTCSEE--EEE--TTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHH---HHTCSEEEECC
T ss_pred HHHHH--HcCCCEE--EcC--CCCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH---hCCCCEEEECC
Confidence 33333 3467775 221 11345556665554 3456888999999988765 67999888873
No 264
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A
Probab=29.13 E-value=74 Score=29.64 Aligned_cols=44 Identities=14% Similarity=0.082 Sum_probs=29.7
Q ss_pred ceEEEEcCCH-HHHHHHHHHhhc--ccCeEEEec-----CCHHHH-HHHHHhh
Q 025857 160 KTVFAISKTP-SEAQIFLEALEQ--GLGGIVLKV-----EDVKAV-LALKEYF 203 (247)
Q Consensus 160 ~~lia~v~~~-~EA~val~~LE~--G~DGVll~~-----~d~~ev-~~l~~~~ 203 (247)
.++++.+.+. ++.+-|+.+.+. |+|||.|++ .|+.+. +++++.+
T Consensus 211 ~~~~vlvDT~d~~~~~al~~a~~l~~~d~IrlDs~~~~~gd~~~~v~~v~~~l 263 (398)
T 2i1o_A 211 QKSVLLIDTYMDEKFAAIKIAEMFDKVDYIRLDTPSSRRGNFEALIREVRWEL 263 (398)
T ss_dssp SCCEEECCSSSCHHHHHHHHHTTCSCCCEEEECCCGGGCSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCchHHHHHHHHHHHhhcCCcEEEeCCCCCCcccHHHHHHHHHHHH
Confidence 3589999987 455555555555 999999999 775543 3344333
No 265
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=29.11 E-value=1.7e+02 Score=22.16 Aligned_cols=56 Identities=16% Similarity=0.045 Sum_probs=33.3
Q ss_pred CCCCeEEEecCCCeee-chhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 025857 131 GQAENIVIDLPDWQVI-PAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (247)
Q Consensus 131 ~~~~~vVv~~~DWtiI-PlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d 192 (247)
..++.+|+-..+.... .+-.+...+ ....++++.+++.+..+.+. +.|+| ++.|..
T Consensus 83 ~~ad~Vi~~~~~~~~~~~~~~~~~~~-~~~~~iv~~~~~~~~~~~l~---~~G~~--vi~p~~ 139 (155)
T 2g1u_A 83 EKADMVFAFTNDDSTNFFISMNARYM-FNVENVIARVYDPEKIKIFE---ENGIK--TICPAV 139 (155)
T ss_dssp GGCSEEEECSSCHHHHHHHHHHHHHT-SCCSEEEEECSSGGGHHHHH---TTTCE--EECHHH
T ss_pred ccCCEEEEEeCCcHHHHHHHHHHHHH-CCCCeEEEEECCHHHHHHHH---HCCCc--EEcHHH
Confidence 3578777666553322 122222222 33568999999998877533 58999 566653
No 266
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=28.91 E-value=42 Score=26.48 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=40.0
Q ss_pred CCCeEEEecCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q--~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
..+.++++..-+..=.+ .++..+. ..+..++...... +......+++.|++|++.+|-+++++.+.-+
T Consensus 51 ~~dlvllD~~l~~~~g~-~~~~~l~~~~~~~~ii~lt~~~-~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~ 120 (233)
T 1ys7_A 51 RPDAIVLDINMPVLDGV-SVVTALRAMDNDVPVCVLSARS-SVDDRVAGLEAGADDYLVKPFVLAELVARVK 120 (233)
T ss_dssp CCSEEEEESSCSSSCHH-HHHHHHHHTTCCCCEEEEECCC-TTTCCCTTTTTTCSEEEESSCCHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHH-HHHHHHHhcCCCCCEEEEEcCC-CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Confidence 45777776543322122 2333332 2345555554432 2334567889999999999999987765433
No 267
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=28.51 E-value=60 Score=25.10 Aligned_cols=66 Identities=15% Similarity=0.167 Sum_probs=38.1
Q ss_pred CCCeEEEecCCCeeechhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q--~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l 199 (247)
..+.++++..-+..=.+ .++..+. ..+..++......+ ......+++.|++|.+.+|-++.++.+.
T Consensus 48 ~~dlvl~D~~lp~~~g~-~~~~~l~~~~~~~~ii~ls~~~~-~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~ 115 (208)
T 1yio_A 48 QHGCLVLDMRMPGMSGI-ELQEQLTAISDGIPIVFITAHGD-IPMTVRAMKAGAIEFLPKPFEEQALLDA 115 (208)
T ss_dssp SCEEEEEESCCSSSCHH-HHHHHHHHTTCCCCEEEEESCTT-SCCCHHHHHTTEEEEEESSCCHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHH-HHHHHHHhcCCCCCEEEEeCCCC-HHHHHHHHHCCCcEEEeCCCCHHHHHHH
Confidence 35666666443322112 2333332 23455665554332 3345678899999999999999876543
No 268
>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A
Probab=28.29 E-value=1.1e+02 Score=27.18 Aligned_cols=73 Identities=18% Similarity=0.178 Sum_probs=47.6
Q ss_pred CCCeEEEecCCC------------eeechhhhhhc-------ccCCCceEEEEcCCH------HHHHH-HHHHhhcccCe
Q 025857 132 QAENIVIDLPDW------------QVIPAENIVAS-------FQGSGKTVFAISKTP------SEAQI-FLEALEQGLGG 185 (247)
Q Consensus 132 ~~~~vVv~~~DW------------tiIPlENlIA~-------~q~~~~~lia~v~~~------~EA~v-al~~LE~G~DG 185 (247)
.+.-+-++...| +++|.|..++. ....+..|++..... +||-- +.-..|.|+|+
T Consensus 103 Ga~gv~iED~~~~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~~i~aRtda~~a~~g~~~ai~Ra~ay~eAGAd~ 182 (290)
T 2hjp_A 103 GASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQAYEEAGADA 182 (290)
T ss_dssp TCSEEEEECBCSSCCC-------CCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTTTTTCCHHHHHHHHHHHHHTTCSE
T ss_pred CCeEEEEcCCCCCccccccccCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHhhccccHHHHHHHHHHHHHcCCcE
Confidence 455666776654 38899876622 122456788876543 66643 34445669999
Q ss_pred EEEec--CCHHHHHHHHHhhc
Q 025857 186 IVLKV--EDVKAVLALKEYFD 204 (247)
Q Consensus 186 Vll~~--~d~~ev~~l~~~~~ 204 (247)
|++.. .++++++++.+.+.
T Consensus 183 i~~e~~~~~~~~~~~i~~~~~ 203 (290)
T 2hjp_A 183 ILIHSRQKTPDEILAFVKSWP 203 (290)
T ss_dssp EEECCCCSSSHHHHHHHHHCC
T ss_pred EEeCCCCCCHHHHHHHHHHcC
Confidence 99976 56788877777654
No 269
>2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); thermophilic, PEP-utilising enzyme, transferase; 1.68A {Thermoanaerobacter tengcongensis} PDB: 2bg5_A 2xz7_A*
Probab=27.98 E-value=62 Score=29.21 Aligned_cols=127 Identities=15% Similarity=0.131 Sum_probs=71.8
Q ss_pred HHHHHHHhCCcEEEecC-cchHH---HhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeEE
Q 025857 62 VMTAAVERGWNTFVFLS-ENQQL---AIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 137 (247)
Q Consensus 62 vvT~ALEsG~d~~v~~~-~~~e~---~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vV 137 (247)
.+..|+..|..+|++|. ++.+. ++++-+-..- .+.-.+. .-+..+.+.+-|+++..+..+....+.+|.+.
T Consensus 127 Ai~ra~~~G~~~ImvPmV~s~~E~~~a~~~v~~~~~-~~r~~G~----~~~~~~~vg~mIEtp~av~~~d~Ia~~vD~~s 201 (324)
T 2xz9_A 127 AILRASAYGNVQIMYPMISSVEEVRKANSILEEVKA-ELDREGV----KYDKEIKVGIMVEIPSAAVTADILAKEVDFFS 201 (324)
T ss_dssp HHHHHGGGSCEEEEECSCCCHHHHHHHHHHHHHHHH-HHHHHTC----CCCTTCEEEEEECSHHHHHTHHHHTTTCSEEE
T ss_pred HHHHHHhCCCCEEEEcCCCCHHHHHHHHHHHHHHHH-HHHhcCC----CCCCCcEEEEEECcHHHHHHHHHHHHhCcEEE
Confidence 67778888999999985 33444 3322100000 0000011 01223557778888988888877776788877
Q ss_pred EecCCCee-----------e--------c-----hhhhhhcccCCCceEEEEc----CCHHHHHHHHHHhhcccCeEEEe
Q 025857 138 IDLPDWQV-----------I--------P-----AENIVASFQGSGKTVFAIS----KTPSEAQIFLEALEQGLGGIVLK 189 (247)
Q Consensus 138 v~~~DWti-----------I--------P-----lENlIA~~q~~~~~lia~v----~~~~EA~val~~LE~G~DGVll~ 189 (247)
+-..|=+. + | ++.++.+.+..+ +-+.+. .|+++++. .++.|.|++.+.
T Consensus 202 iGtnDLtq~~lg~dR~~~~~~~~~~~~~p~v~~ai~~vv~aar~aG-~~vgvcge~~~dp~~~~~---l~~lG~~~~si~ 277 (324)
T 2xz9_A 202 IGTNDLTQYTLAVDRMNEHVKEYYQPFHPAILRLVKMVIDAAHKEG-KFAAMCGEMAGDPLAAVI---LLGLGLDEFSMS 277 (324)
T ss_dssp ECHHHHHHHHTTCCTTCGGGGGGCCTTCHHHHHHHHHHHHHHHHTT-CEEEECSGGGGCHHHHHH---HHHHTCCEEEEC
T ss_pred ECHHHHHHHHhCCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHC-CceeecCccCCCHHHHHH---HHHCCCCEEEEC
Confidence 76444331 1 2 233444444443 334552 36655544 467899999999
Q ss_pred cCCHHHHH
Q 025857 190 VEDVKAVL 197 (247)
Q Consensus 190 ~~d~~ev~ 197 (247)
|+....++
T Consensus 278 p~~i~~~~ 285 (324)
T 2xz9_A 278 ATSIPEIK 285 (324)
T ss_dssp GGGHHHHH
T ss_pred hhHHHHHH
Confidence 99655443
No 270
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=27.59 E-value=88 Score=27.86 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhcccCeEEEecCC------HHHHHHHHHhhc
Q 025857 169 PSEAQIFLEALEQGLGGIVLKVED------VKAVLALKEYFD 204 (247)
Q Consensus 169 ~~EA~val~~LE~G~DGVll~~~d------~~ev~~l~~~~~ 204 (247)
++=.+.|+-+.+.|+|||.++++. -.++..|++.+.
T Consensus 25 Pdpv~aA~~ae~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~ 66 (243)
T 1m5w_A 25 PDPVQAAFIAEQAGADGITVHLREDRRHITDRDVRILRQTLD 66 (243)
T ss_dssp SCHHHHHHHHHTTTCSEEEEECCTTCSSSCHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHcCCCEEEeCCCCCcccCCHHHHHHHHHhcC
Confidence 344456777889999999999874 667888888764
No 271
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=27.49 E-value=1.4e+02 Score=22.97 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=20.6
Q ss_pred HHHHHhhcccCeEEEecCCHHHHHH
Q 025857 174 IFLEALEQGLGGIVLKVEDVKAVLA 198 (247)
Q Consensus 174 val~~LE~G~DGVll~~~d~~ev~~ 198 (247)
....+++.|+|+.+.+|=+++++.+
T Consensus 101 ~~~~~~~~Ga~~yl~KP~~~~~L~~ 125 (134)
T 3to5_A 101 QIIEAAQAGVNGYIVKPFTAATLKE 125 (134)
T ss_dssp HHHHHHHTTCCEEEESSCCHHHHHH
T ss_pred HHHHHHHCCCCEEEECCCCHHHHHH
Confidence 4457789999999999999987654
No 272
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=27.47 E-value=60 Score=26.57 Aligned_cols=32 Identities=19% Similarity=0.089 Sum_probs=22.0
Q ss_pred CCHH-HHHHHHHHhhcccCeEEEecCCHHHHHH
Q 025857 167 KTPS-EAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (247)
Q Consensus 167 ~~~~-EA~val~~LE~G~DGVll~~~d~~ev~~ 198 (247)
.+.+ +.+..-..+++|+|||++.|.+.+....
T Consensus 41 ~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~ 73 (306)
T 8abp_A 41 PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSA 73 (306)
T ss_dssp CSHHHHHHHHHHHHHTTCCEEEEECSCGGGHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHH
Confidence 3444 3444455678999999999988765443
No 273
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=26.93 E-value=2.1e+02 Score=25.48 Aligned_cols=72 Identities=15% Similarity=0.179 Sum_probs=47.6
Q ss_pred EEEEecChhhHhhhccccCCCCeEEEecCCCe--eech---hhhhhcccCCCceEEEEc--CCHHHHHHHHHHhhcccCe
Q 025857 113 SIIEVSTPQELQQLQPADGQAENIVIDLPDWQ--VIPA---ENIVASFQGSGKTVFAIS--KTPSEAQIFLEALEQGLGG 185 (247)
Q Consensus 113 ~~~~I~~~e~le~a~~~~~~~~~vVv~~~DWt--iIPl---ENlIA~~q~~~~~lia~v--~~~~EA~val~~LE~G~DG 185 (247)
++++|.+.++++.+... .++.+=|+-+|-+ -+-+ ++|...+. .+.-++++. ++.+|++.+ .+.|+||
T Consensus 156 ~LvEVh~~~El~rAl~~--~a~iIGINNRnL~tf~vdl~~t~~L~~~ip-~~~~~VsESGI~t~~dv~~l---~~~G~~a 229 (258)
T 4a29_A 156 PLILINDENDLDIALRI--GARFIGIMSRDFETGEINKENQRKLISMIP-SNVVKVAKLGISERNEIEEL---RKLGVNA 229 (258)
T ss_dssp CEEEESSHHHHHHHHHT--TCSEEEECSBCTTTCCBCHHHHHHHHTTSC-TTSEEEEEESSCCHHHHHHH---HHTTCCE
T ss_pred HHHhcchHHHHHHHhcC--CCcEEEEeCCCccccccCHHHHHHHHhhCC-CCCEEEEcCCCCCHHHHHHH---HHCCCCE
Confidence 68999999999988754 3556666666543 1223 33444432 344566655 699998865 4789999
Q ss_pred EEEec
Q 025857 186 IVLKV 190 (247)
Q Consensus 186 Vll~~ 190 (247)
||+-.
T Consensus 230 ~LVGe 234 (258)
T 4a29_A 230 FLISS 234 (258)
T ss_dssp EEECH
T ss_pred EEECH
Confidence 99853
No 274
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=26.85 E-value=77 Score=25.72 Aligned_cols=66 Identities=12% Similarity=0.131 Sum_probs=40.3
Q ss_pred EEecChhhHhhhccccCCCCeEEEecCCCeeechhhhhh----cccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 025857 115 IEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVA----SFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (247)
Q Consensus 115 ~~I~~~e~le~a~~~~~~~~~vVv~~~DWtiIPlENlIA----~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~ 189 (247)
...++++.++.+. ...++.+|+-..|- -.|+.+ .-.+.+.++++.+++.+.++.+. +.|+|-|+..
T Consensus 56 gd~~~~~~l~~a~--i~~ad~vi~~~~~d----~~n~~~~~~a~~~~~~~~iia~~~~~~~~~~l~---~~G~~~vi~p 125 (234)
T 2aef_A 56 GDPTRVSDLEKAN--VRGARAVIVDLESD----SETIHCILGIRKIDESVRIIAEAERYENIEQLR---MAGADQVISP 125 (234)
T ss_dssp SCTTCHHHHHHTT--CTTCSEEEECCSCH----HHHHHHHHHHHHHCSSSEEEEECSSGGGHHHHH---HHTCSEEECH
T ss_pred cCCCCHHHHHhcC--cchhcEEEEcCCCc----HHHHHHHHHHHHHCCCCeEEEEECCHhHHHHHH---HCCCCEEECH
Confidence 3444556555442 33678877766542 344432 22244558999999999886554 5799976543
No 275
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1
Probab=26.08 E-value=84 Score=29.17 Aligned_cols=37 Identities=19% Similarity=0.135 Sum_probs=26.1
Q ss_pred ceEEEEcCCH-HHHHHHHHHhh---cccCeEEEec-----CCHHHH
Q 025857 160 KTVFAISKTP-SEAQIFLEALE---QGLGGIVLKV-----EDVKAV 196 (247)
Q Consensus 160 ~~lia~v~~~-~EA~val~~LE---~G~DGVll~~-----~d~~ev 196 (247)
.++++.+.+. ++++-|+.+.+ .|+|||.|++ .|+.+.
T Consensus 208 ~~~~vlvDT~d~~~~~al~~~~~~~~~~d~IrlDs~~~~~gd~~~~ 253 (395)
T 2i14_A 208 VPRIALVDTFYDEKVEAVMAAEALGKKLFAVRLDTPSSRRGNFRKI 253 (395)
T ss_dssp SCCEEECCSSBCHHHHHHHHHTTTGGGCCEEEECCCTTTCSCHHHH
T ss_pred ccEEEEeccchHHHHHHHHHHHHhccCCcEEEeCCCCCCcccHHHH
Confidence 3589999987 44444555444 8999999999 775543
No 276
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=26.05 E-value=70 Score=23.07 Aligned_cols=37 Identities=22% Similarity=0.190 Sum_probs=24.2
Q ss_pred ceEEEEcC-CHHHHHHHHHHhhcccCeEEEecCCHHHH
Q 025857 160 KTVFAISK-TPSEAQIFLEALEQGLGGIVLKVEDVKAV 196 (247)
Q Consensus 160 ~~lia~v~-~~~EA~val~~LE~G~DGVll~~~d~~ev 196 (247)
..++.... ...+...+..+++.|++|.+.+|-++.++
T Consensus 88 ~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l 125 (145)
T 3kyj_B 88 AKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSH 125 (145)
T ss_dssp CEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC--
T ss_pred CCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHH
Confidence 44554443 23344556788999999999999986643
No 277
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=26.00 E-value=2.1e+02 Score=21.45 Aligned_cols=63 Identities=10% Similarity=-0.041 Sum_probs=38.8
Q ss_pred EecChhhHhhhccccCCCCeEEEecCCCeeechhhhhhc----ccCCCceEEEEcCCHHHHHHHHHHhhcccCeEE
Q 025857 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVAS----FQGSGKTVFAISKTPSEAQIFLEALEQGLGGIV 187 (247)
Q Consensus 116 ~I~~~e~le~a~~~~~~~~~vVv~~~DWtiIPlENlIA~----~q~~~~~lia~v~~~~EA~val~~LE~G~DGVl 187 (247)
...+++.++.+. ...++.+|+-..|- -.|+.+. -.....++++.+++.+.++.+ -+.|+|-|+
T Consensus 57 d~~~~~~l~~a~--i~~ad~vi~~~~~d----~~n~~~~~~a~~~~~~~~ii~~~~~~~~~~~l---~~~G~~~vi 123 (153)
T 1id1_A 57 DSNDSSVLKKAG--IDRCRAILALSDND----ADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKI---KMVHPDIIL 123 (153)
T ss_dssp CTTSHHHHHHHT--TTTCSEEEECSSCH----HHHHHHHHHHHHHTSSSCEEEECSSGGGHHHH---HTTCCSEEE
T ss_pred CCCCHHHHHHcC--hhhCCEEEEecCCh----HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH---HHcCCCEEE
Confidence 344556555442 23678877666552 3444322 112346899999999988765 457999766
No 278
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, STRU genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A
Probab=25.94 E-value=36 Score=33.21 Aligned_cols=60 Identities=13% Similarity=0.081 Sum_probs=46.3
Q ss_pred CCCeEEEecC--CCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 025857 132 QAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (247)
Q Consensus 132 ~~~~vVv~~~--DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~ 193 (247)
..|++.+.|- -=.+.-+..++.+... +..|||-..+.+--+-.-++++. +|||++...|.
T Consensus 221 ~vD~Ia~SFVr~a~Dv~~~r~~l~~~~~-~~~iiaKIE~~eav~nldeIl~~-sDgimVaRGDL 282 (511)
T 3gg8_A 221 GCNFIAASFVQSADDVRYIRGLLGPRGR-HIRIIPKIENVEGLVNFDEILAE-ADGIMIARGDL 282 (511)
T ss_dssp TCCEEEETTCCSHHHHHHHHHHHTGGGT-TCEEEEEECSHHHHHTHHHHHHH-CSCEEEEHHHH
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHhcCC-CCeEEEEECCHHHHHhHHHHHHh-CCeEEEecchh
Confidence 5788888873 2346667777777543 67899999999988888889987 79999987764
No 279
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=25.81 E-value=40 Score=27.87 Aligned_cols=41 Identities=5% Similarity=0.009 Sum_probs=26.6
Q ss_pred CceEEE--EcCCHHHHHHHHHHhhcccCeEEEecCC---HHHHHHHHHh
Q 025857 159 GKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVED---VKAVLALKEY 202 (247)
Q Consensus 159 ~~~lia--~v~~~~EA~val~~LE~G~DGVll~~~d---~~ev~~l~~~ 202 (247)
+..++. -++++++++.++ +.|+|||++.... |..+.++.+.
T Consensus 74 ~ipvi~~ggI~~~~~~~~~~---~~Gad~V~lg~~~l~~p~~~~~~~~~ 119 (253)
T 1thf_D 74 DIPFTVGGGIHDFETASELI---LRGADKVSINTAAVENPSLITQIAQT 119 (253)
T ss_dssp CSCEEEESSCCSHHHHHHHH---HTTCSEEEESHHHHHCTHHHHHHHHH
T ss_pred CCCEEEeCCCCCHHHHHHHH---HcCCCEEEEChHHHhChHHHHHHHHH
Confidence 344454 357888876665 5699999998864 4445554443
No 280
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=25.61 E-value=2.3e+02 Score=21.78 Aligned_cols=108 Identities=13% Similarity=0.147 Sum_probs=57.0
Q ss_pred hhHHHHHHHh-CCcEEEecCcchHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhhccccCCCCeEEE
Q 025857 60 KQVMTAAVER-GWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (247)
Q Consensus 60 KevvT~ALEs-G~d~~v~~~~~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a~~~~~~~~~vVv 138 (247)
..+.....+. |.+-+++.. +.++++.+... |.. .++.+..+++.++.+. ....++.+|+
T Consensus 52 ~~~a~~L~~~~g~~V~vid~-~~~~~~~~~~~-----------------g~~-~~~gd~~~~~~l~~~~-~~~~ad~vi~ 111 (183)
T 3c85_A 52 TGAYDELRARYGKISLGIEI-REEAAQQHRSE-----------------GRN-VISGDATDPDFWERIL-DTGHVKLVLL 111 (183)
T ss_dssp HHHHHHHHHHHCSCEEEEES-CHHHHHHHHHT-----------------TCC-EEECCTTCHHHHHTBC-SCCCCCEEEE
T ss_pred HHHHHHHHhccCCeEEEEEC-CHHHHHHHHHC-----------------CCC-EEEcCCCCHHHHHhcc-CCCCCCEEEE
Confidence 5566666777 998766653 34444443211 100 1122233444444330 1345788776
Q ss_pred ecCCC-eeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 139 DLPDW-QVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 139 ~~~DW-tiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
-..+. ..+.+-..+.. .+...++++.+++.+.++.+ .+.|+|-|+....
T Consensus 112 ~~~~~~~~~~~~~~~~~-~~~~~~ii~~~~~~~~~~~l---~~~G~~~vi~p~~ 161 (183)
T 3c85_A 112 AMPHHQGNQTALEQLQR-RNYKGQIAAIAEYPDQLEGL---LESGVDAAFNIYS 161 (183)
T ss_dssp CCSSHHHHHHHHHHHHH-TTCCSEEEEEESSHHHHHHH---HHHTCSEEEEHHH
T ss_pred eCCChHHHHHHHHHHHH-HCCCCEEEEEECCHHHHHHH---HHcCCCEEEchHH
Confidence 55542 22222222222 24456899999998887743 3569998765443
No 281
>4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C*
Probab=25.36 E-value=1.6e+02 Score=28.21 Aligned_cols=77 Identities=10% Similarity=0.104 Sum_probs=53.8
Q ss_pred EEEEecChhhHhhhccccCCCCeEEEecCCCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHH-HhhcccCeEEEecC
Q 025857 113 SIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLE-ALEQGLGGIVLKVE 191 (247)
Q Consensus 113 ~~~~I~~~e~le~a~~~~~~~~~vVv~~~DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~-~LE~G~DGVll~~~ 191 (247)
..+.-.+++-++.+.+..+...++|-..+ .. +.|.+.+.+...+..+++..++.+.++...+ +.+.|.+-++|+|-
T Consensus 158 L~IDS~dpevleaALea~a~~~plI~sat-~d--n~e~m~~lAa~y~~pVi~~~~dl~~lkelv~~a~~~GI~~IvLDPG 234 (446)
T 4djd_C 158 LVLMADDPDVLKEALAGVADRKPLLYAAT-GA--NYEAMTALAKENNCPLAVYGNGLEELAELVDKIVALGHKQLVLDPG 234 (446)
T ss_dssp EEEECSCHHHHHHHHGGGGGGCCEEEEEC-TT--THHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred EEEecCCHHHHHHHHHhhcCcCCeeEecc-hh--hHHHHHHHHHHcCCcEEEEeccHHHHHHHHHHHHHCCCCcEEECCC
Confidence 33344677888888776655555554443 22 5666766666777788998889998876666 66789999999997
Q ss_pred C
Q 025857 192 D 192 (247)
Q Consensus 192 d 192 (247)
-
T Consensus 235 ~ 235 (446)
T 4djd_C 235 A 235 (446)
T ss_dssp C
T ss_pred c
Confidence 5
No 282
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum}
Probab=25.26 E-value=44 Score=32.24 Aligned_cols=61 Identities=15% Similarity=0.146 Sum_probs=47.4
Q ss_pred CCCCeEEEecC--CCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 025857 131 GQAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (247)
Q Consensus 131 ~~~~~vVv~~~--DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~ 193 (247)
...|++.+.|- -=.+.-+-+++... +.+..|++-..+.+--+-.-++|+. +|||++.+.|.
T Consensus 195 ~~vD~Ia~SfVr~a~Dv~~~r~~l~~~-g~~~~iiaKIE~~eav~nldeIl~~-sDgImVaRGDL 257 (461)
T 3qtg_A 195 DNIDYVAISLAKSCKDVDSVRSLLTEL-GFQSQVAVKIETKGAVNNLEELVQC-SDYVVVARGDL 257 (461)
T ss_dssp GGCCEEEECSCCSHHHHHHHHHHHHHT-TCCCEEEEEECSHHHHHTHHHHHHT-CSEEEEEHHHH
T ss_pred cCCCEEEecCCCCHHHHHHHHHHHHhc-CCCceEEEEECCHHHHHhHHHHHHh-cccEEEccccc
Confidence 35789888873 22355566677664 3457999999999999999999998 99999987764
No 283
>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...
Probab=25.23 E-value=67 Score=27.23 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=25.7
Q ss_pred HHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 025857 173 QIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (247)
Q Consensus 173 ~val~~LE~G~DGVll~~~d~~ev~~l~~~~~ 204 (247)
+++--+-|.|.||++.....+.+++++++...
T Consensus 141 ~~a~~a~~~G~~GvV~~at~~~e~~~ir~~~~ 172 (228)
T 3m47_A 141 EIARMGVDLGVKNYVGPSTRPERLSRLREIIG 172 (228)
T ss_dssp HHHHHHHHTTCCEEECCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCcEEEECCCChHHHHHHHHhcC
Confidence 45556678999999999888888888888653
No 284
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=25.03 E-value=85 Score=25.42 Aligned_cols=29 Identities=7% Similarity=0.125 Sum_probs=20.3
Q ss_pred HHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 025857 171 EAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (247)
Q Consensus 171 EA~val~~LE~G~DGVll~~~d~~ev~~l 199 (247)
+.+..-..+.+|+|||++.+.+.......
T Consensus 50 ~~~~~~~l~~~~vdgiIi~~~~~~~~~~~ 78 (291)
T 3l49_A 50 QVSQIQTLIAQKPDAIIEQLGNLDVLNPW 78 (291)
T ss_dssp HHHHHHHHHHHCCSEEEEESSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCChhhhHHH
Confidence 34455556789999999999886544433
No 285
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 3srh_A 3srd_A 1zjh_A 4b2d_A* 4b2d_D* 3u2z_A* 3g2g_A 1t5a_A* 3bjt_A 4g1n_A* 3bjf_A* 3srf_C 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* ...
Probab=25.02 E-value=39 Score=33.30 Aligned_cols=61 Identities=15% Similarity=0.212 Sum_probs=41.8
Q ss_pred CCCeEEEecC--CCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 025857 132 QAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (247)
Q Consensus 132 ~~~~vVv~~~--DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ 194 (247)
.+|++.+.|- -=.+.-+-.++.+. +.+..||+-..+.+--+-+-++++. +|||++.+.|.+
T Consensus 255 ~vD~ia~SfVr~a~Dv~~~r~~L~~~-g~~i~IIAKIE~~eav~nldeIl~~-sDgImVaRGDLg 317 (550)
T 3gr4_A 255 DVDMVFASFIRKASDVHEVRKVLGEK-GKNIKIISKIENHEGVRRFDEILEA-SDGIMVARGDLG 317 (550)
T ss_dssp TCSEEEETTCCSHHHHHHHHHHHTTT-TTTSEEEEEECSHHHHHTHHHHHHH-SSEEEEEHHHHH
T ss_pred CCCEEEecCCCCHHHHHHHHHHHHhc-CCCceEEEEeCCHHHHHHHHHHHHh-CCEEEEccchhc
Confidence 4677776652 12344455556553 3467888888888888888888887 889998877643
No 286
>1fvi_A Chlorella virus DNA ligase-adenylate; adenylated DNA ligase; HET: AMP; 2.00A {Chlorella virus} SCOP: b.40.4.6 d.142.2.1 PDB: 2q2t_A* 2q2u_A* 1p8l_A*
Probab=24.99 E-value=87 Score=27.56 Aligned_cols=27 Identities=19% Similarity=0.436 Sum_probs=21.6
Q ss_pred cCCHHHHHHHH-HHhhcccCeEEEecCC
Q 025857 166 SKTPSEAQIFL-EALEQGLGGIVLKVED 192 (247)
Q Consensus 166 v~~~~EA~val-~~LE~G~DGVll~~~d 192 (247)
+.+.++++.++ .++++|.+|||++..|
T Consensus 141 ~~~~~~~~~~~~~~~~~g~EGlv~K~~d 168 (297)
T 1fvi_A 141 INNITELLQYERDVLSKGFEGVMIRKPD 168 (297)
T ss_dssp ECSHHHHHHHHHHHHHTTCCSEEEECTT
T ss_pred cCCHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 46888877666 5688999999999764
No 287
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=24.68 E-value=85 Score=27.20 Aligned_cols=33 Identities=21% Similarity=0.009 Sum_probs=23.9
Q ss_pred cCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 025857 166 SKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (247)
Q Consensus 166 v~~~~EA~val~~LE~G~DGVll~~~d~~ev~~l~~ 201 (247)
+-+.++|+.+ ++.|+|+|+....|++-++..++
T Consensus 93 Vlt~~~a~~A---i~AGA~fIvsP~~~~~vi~~~~~ 125 (232)
T 4e38_A 93 ILNGEQALAA---KEAGATFVVSPGFNPNTVRACQE 125 (232)
T ss_dssp CCSHHHHHHH---HHHTCSEEECSSCCHHHHHHHHH
T ss_pred cCCHHHHHHH---HHcCCCEEEeCCCCHHHHHHHHH
Confidence 4567777665 56799999988888876655554
No 288
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3srk_A* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A*
Probab=24.22 E-value=37 Score=33.05 Aligned_cols=61 Identities=15% Similarity=0.124 Sum_probs=43.3
Q ss_pred CCCeEEEecC--CCeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 025857 132 QAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (247)
Q Consensus 132 ~~~~vVv~~~--DWtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ 194 (247)
.+|++.+.|- -=.+.-+-+++.+. +.+..|++-..+.+--+-+-++++. +|||++.+.|.+
T Consensus 205 ~vD~i~~sfVr~a~dv~~~r~~l~~~-~~~i~IiaKIE~~eav~nldeIl~~-sDgImVaRGDLg 267 (499)
T 3hqn_D 205 GVDMIFASFIRSAEQVGDVRKALGPK-GRDIMIICKIENHQGVQNIDSIIEE-SDGIMVARGDLG 267 (499)
T ss_dssp TCSEEEETTCCSHHHHHHHHHHHCGG-GTTSEEEEEECSHHHHHTHHHHHHH-SSEEEEEHHHHH
T ss_pred CCCEEEecCCCCHHHHHHHHHHHHhc-CCCCeEEEEECCHHHHHhHHHHHHh-CCcEEEcccccc
Confidence 4677777763 22344455556552 4467899999998888888888888 899999887743
No 289
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=24.21 E-value=1.6e+02 Score=23.74 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=16.7
Q ss_pred CHHH-HHHHHHHhhcccCeEEEecCC
Q 025857 168 TPSE-AQIFLEALEQGLGGIVLKVED 192 (247)
Q Consensus 168 ~~~E-A~val~~LE~G~DGVll~~~d 192 (247)
+.+. .+..-..+++|+|||++.+.+
T Consensus 56 ~~~~~~~~~~~l~~~~vdgiIi~~~~ 81 (298)
T 3tb6_A 56 NPDNERRGLENLLSQHIDGLIVEPTK 81 (298)
T ss_dssp CHHHHHHHHHHHHHTCCSEEEECCSS
T ss_pred ChHHHHHHHHHHHHCCCCEEEEeccc
Confidence 4443 334444568999999998864
No 290
>1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3
Probab=24.07 E-value=96 Score=25.89 Aligned_cols=36 Identities=11% Similarity=0.262 Sum_probs=0.0
Q ss_pred CCcEEEEEe-CchhHHHHHHHhCCcEEEecCcchHHHhhc
Q 025857 49 KPKRVWIWT-ESKQVMTAAVERGWNTFVFLSENQQLAIDW 87 (247)
Q Consensus 49 ~~K~vWiW~-~~KevvT~ALEsG~d~~v~~~~~~e~~~~l 87 (247)
+-+.||+|+ .+++.+...++. +|+|+... .+..+++
T Consensus 197 ~G~~v~~wTvn~~~~~~~l~~~-vdgIiTD~--P~~~~~~ 233 (234)
T 1o1z_A 197 KGIVIFVWTLNDPEIYRKIRRE-IDGVITDE--VELFVKL 233 (234)
T ss_dssp TTCEEEEESCCCHHHHHHHGGG-CSEEEESC--HHHHHHT
T ss_pred cCCEEEEeCCCCHHHHHHHHHh-CCEEEcCC--HHHHhhc
No 291
>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*
Probab=24.05 E-value=58 Score=26.63 Aligned_cols=31 Identities=10% Similarity=0.030 Sum_probs=25.6
Q ss_pred HHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 025857 173 QIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (247)
Q Consensus 173 ~val~~LE~G~DGVll~~~d~~ev~~l~~~~ 203 (247)
+++..+.|-|.||+++.+..+++++++++..
T Consensus 123 ~~~~~a~~~G~~G~~~~~~~~~~i~~lr~~~ 153 (208)
T 2czd_A 123 RFIEVANEIEPFGVIAPGTRPERIGYIRDRL 153 (208)
T ss_dssp HHHHHHHHHCCSEEECCCSSTHHHHHHHHHS
T ss_pred HHHHHHHHhCCcEEEECCCChHHHHHHHHhC
Confidence 3455677899999999999999998888765
No 292
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=24.02 E-value=42 Score=29.46 Aligned_cols=60 Identities=13% Similarity=0.059 Sum_probs=36.9
Q ss_pred CCCeEEEecCCCeeechhhhhhcccCC--CceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC---CHHHHH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQGS--GKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE---DVKAVL 197 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~~--~~~lia--~v~~~~EA~val~~LE~G~DGVll~~~---d~~ev~ 197 (247)
..+++-++..+=+. .+.+|+++.+. +..++. .++++++|+. +++ |+|||++-+- |++.++
T Consensus 159 g~~~vY~e~sG~~g--~~~~v~~ir~~~~~~pv~vGfGI~~~e~a~~---~~~-gAD~VVVGSai~~~~~~~~ 225 (235)
T 3w01_A 159 RLPVMYIEYSGIYG--DVSKVQAVSEHLTETQLFYGGGISSEQQATE---MAA-IADTIIVGDIIYKDIKKAL 225 (235)
T ss_dssp CCSEEEEECTTSCC--CHHHHHHHHTTCSSSEEEEESCCCSHHHHHH---HHT-TSSEEEECTHHHHCHHHHH
T ss_pred CCCEEEEecCCCcC--CHHHHHHHHHhcCCCCEEEECCcCCHHHHHH---HHc-CCCEEEECCceecCHHHHH
Confidence 34666666655443 45666665442 333443 4589999985 456 9999999775 555433
No 293
>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482}
Probab=23.95 E-value=16 Score=33.12 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=10.3
Q ss_pred ceeee-eccCCCCCC
Q 025857 230 DRVCV-DLCSLMRPG 243 (247)
Q Consensus 230 DRVCV-DTcSlm~~G 243 (247)
|++|+ ||..++.|.
T Consensus 158 ~~i~l~Dt~G~~~P~ 172 (320)
T 3dxi_A 158 DLFCMVDSFGGITPK 172 (320)
T ss_dssp SEEEEECTTSCCCHH
T ss_pred CEEEECcccCCCCHH
Confidence 67776 888887764
No 294
>3i10_A Putative glycerophosphoryl diester phosphodiester; NP_812074.1; HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482}
Probab=23.85 E-value=56 Score=28.66 Aligned_cols=54 Identities=13% Similarity=0.206 Sum_probs=0.0
Q ss_pred chhhhhhcccCCCceEEE---------------EcCCHHHHHHHHHHhhc-ccCeEEEecCCHHHHHHHHHhhcccc
Q 025857 147 PAENIVASFQGSGKTVFA---------------ISKTPSEAQIFLEALEQ-GLGGIVLKVEDVKAVLALKEYFDGRN 207 (247)
Q Consensus 147 PlENlIA~~q~~~~~lia---------------~v~~~~EA~val~~LE~-G~DGVll~~~d~~ev~~l~~~~~~~~ 207 (247)
|+.+++++++..+.+++. .++|+++. +-..++. |+|||. ||.|. .|.+++..++
T Consensus 206 ~~~~~v~~~~~~g~~v~~nTlw~~~~~g~~d~~a~~d~~~~--~~~l~~~~Gvd~I~--TD~P~---~l~~yL~~~~ 275 (278)
T 3i10_A 206 PLPPKIKQLLFKKSLIWYNTLWGSLAGNHDDNLALTDPEKS--YGYLIEQLGARILQ--TDQPA---YLLDYLRKKG 275 (278)
T ss_dssp SSHHHHHHHHTTTSEEEEECSSGGGBTTCCHHHHHHCHHHH--HHHHHHTTCEEEEE--ESCHH---HHHHHHHHHT
T ss_pred chHHHHHHHHHCCCEEEEEecccccccCccchhhccChHHH--HHHHHhcCCCCEEE--eCCHH---HHHHHHhhcc
No 295
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=23.74 E-value=3.6e+02 Score=23.88 Aligned_cols=61 Identities=16% Similarity=0.148 Sum_probs=36.9
Q ss_pred CCCeEEEecCCCeeechhhhhhccc-CCCceEEEEcCCHH-HHHHHHHHhhcccCeEEEecCCH
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQ-GSGKTVFAISKTPS-EAQIFLEALEQGLGGIVLKVEDV 193 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q-~~~~~lia~v~~~~-EA~val~~LE~G~DGVll~~~d~ 193 (247)
..|.++++..-+.. .--.++..+. .....++......+ +++....+++.|+++++.+|-++
T Consensus 49 ~pDlVllDi~mp~~-dGlell~~l~~~~p~pVIvlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~ 111 (349)
T 1a2o_A 49 NPDVLTLDVEMPRM-DGLDFLEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLG 111 (349)
T ss_dssp CCSEEEEECCCSSS-CHHHHHHHHHHSSCCCEEEEECCTHHHHHHHHHHHHHTCCEEEECSSSS
T ss_pred CCCEEEEECCCCCC-CHHHHHHHHHhcCCCcEEEEECCCcccHHHHHHHHhCCceEEEECCCCc
Confidence 45777776543221 1112222221 12256666665444 46788999999999999999883
No 296
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A
Probab=23.48 E-value=42 Score=32.27 Aligned_cols=73 Identities=16% Similarity=0.155 Sum_probs=51.9
Q ss_pred ChhhHhhhccccCCCCeEEEecC-C-CeeechhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 025857 119 TPQELQQLQPADGQAENIVIDLP-D-WQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (247)
Q Consensus 119 ~~e~le~a~~~~~~~~~vVv~~~-D-WtiIPlENlIA~~q~~~~~lia~v~~~~EA~val~~LE~G~DGVll~~~d~~ 194 (247)
|++++..+... .+|++.+.|- . =.+.-+..++.+.++.+..|++-..+++--+-+-++++. +|||++.+.|.+
T Consensus 174 D~~Di~~~l~~--gvD~I~lsfV~saeDv~~~~~~l~~~~~~~i~IiakIEt~eav~nldeI~~~-sDgImVargDLg 248 (470)
T 1e0t_A 174 DKQDLIFGCEQ--GVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEA-SDGIMVARGDLG 248 (470)
T ss_dssp HHHHHHHHHHH--TCSEEEESSCCSHHHHHHHHHHHHTTTCTTCEEEEEECSHHHHHTHHHHHHH-SSEEEEEHHHHH
T ss_pred CHHHHHHHHHc--CCCEEEECCCCCHHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHH-CCEEEECchHhh
Confidence 44455544433 5788888773 2 234455566666434568999999999988888889888 999999998753
No 297
>3ih1_A Methylisocitrate lyase; alpha-beta structure, TIM-barrel, center for structural GENO infectious diseases, csgid; 2.00A {Bacillus anthracis str} PDB: 3kz2_A
Probab=23.31 E-value=1.9e+02 Score=26.05 Aligned_cols=72 Identities=11% Similarity=0.177 Sum_probs=47.6
Q ss_pred CCCeEEEecCCC----------eeechhhhhhccc-----CCCceEEEEcCC-----HHHH-HHHHHHhhcccCeEEEe-
Q 025857 132 QAENIVIDLPDW----------QVIPAENIVASFQ-----GSGKTVFAISKT-----PSEA-QIFLEALEQGLGGIVLK- 189 (247)
Q Consensus 132 ~~~~vVv~~~DW----------tiIPlENlIA~~q-----~~~~~lia~v~~-----~~EA-~val~~LE~G~DGVll~- 189 (247)
.+.-+-++..-| +++|.|..+..+. +.+..|+|.... .+|| +-+.-..|.|+|+|++.
T Consensus 117 Gaagv~iED~~~~krcGh~~gk~l~~~~e~~~rI~Aa~~A~~~~~I~ARtda~~~~g~~~ai~Ra~ay~eAGAD~i~~e~ 196 (305)
T 3ih1_A 117 KVAAVQIEDQQLPKKCGHLNGKKLVTTEELVQKIKAIKEVAPSLYIVARTDARGVEGLDEAIERANAYVKAGADAIFPEA 196 (305)
T ss_dssp TCSEEEEECBCSSCCTTCTTCCCBCCHHHHHHHHHHHHHHCTTSEEEEEECCHHHHCHHHHHHHHHHHHHHTCSEEEETT
T ss_pred CCcEEEECCCCCCcccCCCCCCcccCHHHHHHHHHHHHHcCCCeEEEEeeccccccCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 455566776544 5899987665431 445678888765 3444 33444567799999995
Q ss_pred cCCHHHHHHHHHhh
Q 025857 190 VEDVKAVLALKEYF 203 (247)
Q Consensus 190 ~~d~~ev~~l~~~~ 203 (247)
+.++++++++.+.+
T Consensus 197 ~~~~~~~~~i~~~~ 210 (305)
T 3ih1_A 197 LQSEEEFRLFNSKV 210 (305)
T ss_dssp CCSHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHc
Confidence 45678887777655
No 298
>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A
Probab=23.20 E-value=1.9e+02 Score=25.83 Aligned_cols=73 Identities=11% Similarity=0.076 Sum_probs=48.6
Q ss_pred CCCeEEEecCCC------------eeechhhhhhc-------ccCCCceEEEEcCCH------HHHH-HHHHHhhcccCe
Q 025857 132 QAENIVIDLPDW------------QVIPAENIVAS-------FQGSGKTVFAISKTP------SEAQ-IFLEALEQGLGG 185 (247)
Q Consensus 132 ~~~~vVv~~~DW------------tiIPlENlIA~-------~q~~~~~lia~v~~~------~EA~-val~~LE~G~DG 185 (247)
.+.-+-|+..-| +++|.|..+.. ....+-.|++..... +||- -+.-..|.|+|+
T Consensus 107 Gaagv~iED~~~~k~cgH~gg~~k~l~p~~e~~~rI~Aa~~a~~~~~~~i~aRtda~~a~~g~~~ai~Ra~ay~eAGAd~ 186 (295)
T 1s2w_A 107 GVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGWGLDEALKRAEAYRNAGADA 186 (295)
T ss_dssp TCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTCCHHHHHHHHHHHHHTTCSE
T ss_pred CCcEEEECCCCCCccccccCCCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHHhccccHHHHHHHHHHHHHcCCCE
Confidence 455566666543 37888876543 223456778776543 5543 455667899999
Q ss_pred EEEec--CCHHHHHHHHHhhc
Q 025857 186 IVLKV--EDVKAVLALKEYFD 204 (247)
Q Consensus 186 Vll~~--~d~~ev~~l~~~~~ 204 (247)
|++.+ .|.++++++.+.+.
T Consensus 187 i~~e~~~~~~~~~~~i~~~~~ 207 (295)
T 1s2w_A 187 ILMHSKKADPSDIEAFMKAWN 207 (295)
T ss_dssp EEECCCSSSSHHHHHHHHHHT
T ss_pred EEEcCCCCCHHHHHHHHHHcC
Confidence 99974 57898888877654
No 299
>3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis}
Probab=23.10 E-value=92 Score=27.27 Aligned_cols=30 Identities=13% Similarity=0.055 Sum_probs=23.7
Q ss_pred CCCcEEEEEeC-c----------hhHHHHHHHhCCcEEEec
Q 025857 48 SKPKRVWIWTE-S----------KQVMTAAVERGWNTFVFL 77 (247)
Q Consensus 48 ~~~K~vWiW~~-~----------KevvT~ALEsG~d~~v~~ 77 (247)
.+-+.||+|+- . .+.+...++.|+|+|+..
T Consensus 226 ~~G~~V~vWTv~t~d~~~~~~~~~~~~~~L~~~GVDgIiTD 266 (292)
T 3mz2_A 226 ERGVMCMISTAPSDDKLSTPESRAEAYRMIIRQGVDIIESD 266 (292)
T ss_dssp HTTBCEEEECTTTGGGSSSHHHHHHHHHHHHHTTCCEEEES
T ss_pred HCCCEEEEEeCCCcchhhhccccHHHHHHHHHcCCCEEEeC
Confidence 45677999982 2 358889999999999974
No 300
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=22.96 E-value=1e+02 Score=25.48 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=16.9
Q ss_pred HHHHHHHHhhcccCeEEEecCCHH
Q 025857 171 EAQIFLEALEQGLGGIVLKVEDVK 194 (247)
Q Consensus 171 EA~val~~LE~G~DGVll~~~d~~ 194 (247)
+.+..-..+++++|||++.+.+..
T Consensus 60 ~~~~~~~l~~~~vdgiI~~~~~~~ 83 (303)
T 3kke_A 60 TQQLSRLVSEGRVDGVLLQRREDF 83 (303)
T ss_dssp HHHHHHHHHSCSSSEEEECCCTTC
T ss_pred HHHHHHHHHhCCCcEEEEecCCCC
Confidence 344444556899999999886544
No 301
>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI; 2.00A {Enterococcus faecalis} SCOP: c.1.17.1 d.41.2.1
Probab=22.66 E-value=94 Score=29.86 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=31.3
Q ss_pred EEEEcCCHH-------HHHHHHHHhh--cccCeEEEecCCHHHH-HHHHHhhc
Q 025857 162 VFAISKTPS-------EAQIFLEALE--QGLGGIVLKVEDVKAV-LALKEYFD 204 (247)
Q Consensus 162 lia~v~~~~-------EA~val~~LE--~G~DGVll~~~d~~ev-~~l~~~~~ 204 (247)
+++.+.+.+ +|-.++..|. .|.|||.+++-|+.++ +++++.++
T Consensus 228 ~~vlvDT~d~l~~gv~~al~~~~~l~~~~~~~gIRlDSgd~~~l~~~~r~~ld 280 (494)
T 2f7f_A 228 CVFLVDTYDTLKAGVPSAIRVAREMGDKINFLGVRIDSGDMAYISKRVREQLD 280 (494)
T ss_dssp EEEECCSSCTTTTHHHHHHHHHHHHGGGSEEEEEEECSSCHHHHHHHHHHHHH
T ss_pred EEEEEccchHhhhhHHHHHHHHHHhhhhcCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 888888875 4444344443 6999999999999988 66666654
No 302
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=22.57 E-value=94 Score=28.53 Aligned_cols=53 Identities=11% Similarity=0.167 Sum_probs=31.5
Q ss_pred CCCeEEEecC-CCeeechhhhhhcccC--CCceEEE-EcCCHHHHHHHHHHhhcccCeEEE
Q 025857 132 QAENIVIDLP-DWQVIPAENIVASFQG--SGKTVFA-ISKTPSEAQIFLEALEQGLGGIVL 188 (247)
Q Consensus 132 ~~~~vVv~~~-DWtiIPlENlIA~~q~--~~~~lia-~v~~~~EA~val~~LE~G~DGVll 188 (247)
.++.++|+.. ...--.+| .|.++.. .+..+++ .+.+.++|+.+. +.|+|+|.+
T Consensus 120 Gvd~I~idta~G~~~~~~~-~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~---~aGAD~I~v 176 (366)
T 4fo4_A 120 GVDVLLIDSSHGHSEGVLQ-RIRETRAAYPHLEIIGGNVATAEGARALI---EAGVSAVKV 176 (366)
T ss_dssp TCSEEEEECSCTTSHHHHH-HHHHHHHHCTTCEEEEEEECSHHHHHHHH---HHTCSEEEE
T ss_pred CCCEEEEeCCCCCCHHHHH-HHHHHHHhcCCCceEeeeeCCHHHHHHHH---HcCCCEEEE
Confidence 5788887643 21111122 2222222 1445555 589999998765 569999999
No 303
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=22.44 E-value=90 Score=28.31 Aligned_cols=53 Identities=13% Similarity=0.123 Sum_probs=32.7
Q ss_pred CCCCeEEEec--CCCeeechhhhhhcccCC--CceEEE-EcCCHHHHHHHHHHhhcccCeEEE
Q 025857 131 GQAENIVIDL--PDWQVIPAENIVASFQGS--GKTVFA-ISKTPSEAQIFLEALEQGLGGIVL 188 (247)
Q Consensus 131 ~~~~~vVv~~--~DWtiIPlENlIA~~q~~--~~~lia-~v~~~~EA~val~~LE~G~DGVll 188 (247)
...+.+.++. .+. -.+.++|+++... +..|+. .+.+.++|+.+. +.|+|+|++
T Consensus 164 ~G~d~i~i~~~~g~~--~~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~---~~Gad~I~v 221 (404)
T 1eep_A 164 AHVDILVIDSAHGHS--TRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLI---SVGADCLKV 221 (404)
T ss_dssp TTCSEEEECCSCCSS--HHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHH---TTTCSEEEE
T ss_pred CCCCEEEEeCCCCCh--HHHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHH---hcCCCEEEE
Confidence 3567777643 232 1133444443332 456774 788988887664 789999999
No 304
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=21.95 E-value=1.2e+02 Score=24.62 Aligned_cols=30 Identities=10% Similarity=0.245 Sum_probs=20.3
Q ss_pred CHHHH-HHHHHHhhcccCeEEEecCCHHHHH
Q 025857 168 TPSEA-QIFLEALEQGLGGIVLKVEDVKAVL 197 (247)
Q Consensus 168 ~~~EA-~val~~LE~G~DGVll~~~d~~ev~ 197 (247)
+.++. +..-..+++|+|||++.+.+.....
T Consensus 46 ~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~ 76 (303)
T 3d02_A 46 DAPQQVKIIEDLIARKVDAITIVPNDANVLE 76 (303)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCSCHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCChHHHH
Confidence 44443 3344456899999999988876543
No 305
>1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics, PSI, protein structu initiative; 1.70A {Escherichia coli} SCOP: c.1.18.3 PDB: 1t8q_A
Probab=21.72 E-value=36 Score=30.35 Aligned_cols=48 Identities=10% Similarity=0.212 Sum_probs=31.1
Q ss_pred hhhhhcccCCCceEEEEc-CCH------HHHHHHHH--HhhcccCeEEEecCCHHHHHH
Q 025857 149 ENIVASFQGSGKTVFAIS-KTP------SEAQIFLE--ALEQGLGGIVLKVEDVKAVLA 198 (247)
Q Consensus 149 ENlIA~~q~~~~~lia~v-~~~------~EA~val~--~LE~G~DGVll~~~d~~ev~~ 198 (247)
..+|++++..+-+|++-- ++. .+.+.++. .++.|+|||+ ||.|+.+.+
T Consensus 297 ~~~v~~ah~~Gl~V~~WTvn~~~l~~~~~d~~~~~~~~l~~~GVDgIi--TD~P~~~~~ 353 (356)
T 1ydy_A 297 TGMVQDAQQNKLVVHPYTVRSDKLPEYTPDVNQLYDALYNKAGVNGLF--TDFPDKAVK 353 (356)
T ss_dssp CSHHHHHHHTTCEECCBCBCTTSCCTTCSSHHHHHHHHHTTSCCSEEE--ESCHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEEECcccccccccCHHHHHHHHHHHcCCCEEE--eCCHHHHHH
Confidence 678888888777766544 432 12233322 3589999998 788886543
No 306
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=21.71 E-value=3e+02 Score=24.27 Aligned_cols=70 Identities=14% Similarity=0.210 Sum_probs=44.2
Q ss_pred EecChhhHhhhccccCCCCeEEEec-----------CCCeeec---hhhhhhcccCCCceEEE--EcCCHHHHHHHHHHh
Q 025857 116 EVSTPQELQQLQPADGQAENIVIDL-----------PDWQVIP---AENIVASFQGSGKTVFA--ISKTPSEAQIFLEAL 179 (247)
Q Consensus 116 ~I~~~e~le~a~~~~~~~~~vVv~~-----------~DWtiIP---lENlIA~~q~~~~~lia--~v~~~~EA~val~~L 179 (247)
.+.+.++.+.+... .++.+++.. .+|- +| ++-|....+..+..||+ .+.+.+|+..++.
T Consensus 156 ~v~s~e~A~~a~~a--Gad~Ivvs~hgG~~~~~~~~~~~g-~~g~~~~~l~~v~~~~~ipVIa~GGI~~g~Dv~kala-- 230 (336)
T 1ypf_A 156 NVGTPEAVRELENA--GADATKVGIGPGKVCITKIKTGFG-TGGWQLAALRWCAKAASKPIIADGGIRTNGDVAKSIR-- 230 (336)
T ss_dssp EECSHHHHHHHHHH--TCSEEEECSSCSTTCHHHHHHSCS-STTCHHHHHHHHHHTCSSCEEEESCCCSTHHHHHHHH--
T ss_pred CcCCHHHHHHHHHc--CCCEEEEecCCCceeecccccCcC-CchhHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHH--
Confidence 46777776666543 578888832 1222 12 33333222233567888 8899999887764
Q ss_pred hcccCeEEEecC
Q 025857 180 EQGLGGIVLKVE 191 (247)
Q Consensus 180 E~G~DGVll~~~ 191 (247)
.|+|+|.+-+.
T Consensus 231 -lGAdaV~iGr~ 241 (336)
T 1ypf_A 231 -FGATMVMIGSL 241 (336)
T ss_dssp -TTCSEEEESGG
T ss_pred -cCCCEEEeChh
Confidence 59999998765
No 307
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=21.69 E-value=29 Score=29.61 Aligned_cols=29 Identities=10% Similarity=-0.149 Sum_probs=21.2
Q ss_pred EcCCHHHHHHHHHHhhcccCeEEEecCCHHHH
Q 025857 165 ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAV 196 (247)
Q Consensus 165 ~v~~~~EA~val~~LE~G~DGVll~~~d~~ev 196 (247)
.+-+.++++.++ +.|+|||++...|+.-+
T Consensus 84 tvl~~d~~~~A~---~aGAd~v~~p~~d~~v~ 112 (225)
T 1mxs_A 84 TVLDRSMFAAVE---AAGAQFVVTPGITEDIL 112 (225)
T ss_dssp CCCSHHHHHHHH---HHTCSSEECSSCCHHHH
T ss_pred eEeeHHHHHHHH---HCCCCEEEeCCCCHHHH
Confidence 345678888765 55999999887777644
No 308
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=21.61 E-value=98 Score=27.98 Aligned_cols=55 Identities=15% Similarity=0.097 Sum_probs=31.8
Q ss_pred CCCeEEEecCCCeeechhhhhhcccCC--CceEE-EEcCCHHHHHHHHHHhhcccCeEEEe
Q 025857 132 QAENIVIDLPDWQVIPAENIVASFQGS--GKTVF-AISKTPSEAQIFLEALEQGLGGIVLK 189 (247)
Q Consensus 132 ~~~~vVv~~~DWtiIPlENlIA~~q~~--~~~li-a~v~~~~EA~val~~LE~G~DGVll~ 189 (247)
..+.+.++...-.-..+-..|..+... +..|+ ..+.+.++|+.+ .+.|+|+|.+.
T Consensus 132 g~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a---~~aGaD~I~v~ 189 (351)
T 2c6q_A 132 QVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEEL---ILSGADIIKVG 189 (351)
T ss_dssp TCCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHH---HHTTCSEEEEC
T ss_pred CCCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHH---HHhCCCEEEEC
Confidence 466666664311111223345544332 34555 568888888765 57899999874
No 309
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=20.97 E-value=1.5e+02 Score=26.73 Aligned_cols=118 Identities=14% Similarity=0.099 Sum_probs=64.4
Q ss_pred CchhHHHHHHHhCCcEEEecCc-----------chHHHhhccceeEEeeeeecCCceecCCCCeEEEEEEecChhhHhhh
Q 025857 58 ESKQVMTAAVERGWNTFVFLSE-----------NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQL 126 (247)
Q Consensus 58 ~~KevvT~ALEsG~d~~v~~~~-----------~~e~~~~lg~i~~i~pl~i~~g~~~~~~g~~va~~~~I~~~e~le~a 126 (247)
++-+-+.+|.+.|+|.|=+.+. ..+.+++..+|.+..=+...+|+|. .++++++.+
T Consensus 47 ~s~~~a~~A~~gGAdRIELc~~l~~GGlTPS~g~i~~a~~~~~ipV~vMIRPRgGdF~-------------Ys~~E~~~M 113 (287)
T 3iwp_A 47 DSVESAVNAERGGADRIELCSGLSEGGTTPSMGVLQVVKQSVQIPVFVMIRPRGGDFL-------------YSDREIEVM 113 (287)
T ss_dssp SSHHHHHHHHHHTCSEEEECBCGGGTCBCCCHHHHHHHHTTCCSCEEEECCSSSSCSC-------------CCHHHHHHH
T ss_pred CCHHHHHHHHHhCCCEEEECCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEecCCCCcc-------------cCHHHHHHH
Confidence 5688899999999999865432 1334444444444221222444433 354555444
Q ss_pred cccc-----CCCCeEEEecCCCe-eec---hhhhhhcccCCCceEEEEc----CCHHHHHHHHHHhhcccCeEEEecC
Q 025857 127 QPAD-----GQAENIVIDLPDWQ-VIP---AENIVASFQGSGKTVFAIS----KTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 127 ~~~~-----~~~~~vVv~~~DWt-iIP---lENlIA~~q~~~~~lia~v----~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
.... ..++-+|+-+.+.. -|. ++.||+..+.-+. .|-.+ .|+.+|--.+- +.|+|-||-...
T Consensus 114 ~~dI~~~~~~GAdGvVfG~L~~dg~iD~~~~~~Li~~a~~l~v-TFHRAFD~~~d~~~Ale~Li--~lGvdrILTSG~ 188 (287)
T 3iwp_A 114 KADIRLAKLYGADGLVFGALTEDGHIDKELCMSLMAICRPLPV-TFHRAFDMVHDPMAALETLL--TLGFERVLTSGC 188 (287)
T ss_dssp HHHHHHHHHTTCSEEEECCBCTTSCBCHHHHHHHHHHHTTSCE-EECGGGGGCSCHHHHHHHHH--HHTCSEEEECTT
T ss_pred HHHHHHHHHcCCCEEEEeeeCCCCCcCHHHHHHHHHHcCCCcE-EEECchhccCCHHHHHHHHH--HcCCCEEECCCC
Confidence 3221 25788888863322 245 4456777655432 23222 35555543333 339999998764
No 310
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=20.80 E-value=1.1e+02 Score=28.69 Aligned_cols=54 Identities=19% Similarity=0.272 Sum_probs=33.3
Q ss_pred CCCCeEEEecC-CCeeechhhhhhcccCC--CceEEE-EcCCHHHHHHHHHHhhcccCeEEE
Q 025857 131 GQAENIVIDLP-DWQVIPAENIVASFQGS--GKTVFA-ISKTPSEAQIFLEALEQGLGGIVL 188 (247)
Q Consensus 131 ~~~~~vVv~~~-DWtiIPlENlIA~~q~~--~~~lia-~v~~~~EA~val~~LE~G~DGVll 188 (247)
..++.+.++.. +..-.++ ++|.++... +..|++ .+.+.++|+.+. +.|+|+|.+
T Consensus 266 aG~d~v~i~~~~G~~~~~~-~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~---~aGad~I~v 323 (514)
T 1jcn_A 266 AGVDVIVLDSSQGNSVYQI-AMVHYIKQKYPHLQVIGGNVVTAAQAKNLI---DAGVDGLRV 323 (514)
T ss_dssp TTCSEEEECCSCCCSHHHH-HHHHHHHHHCTTCEEEEEEECSHHHHHHHH---HHTCSEEEE
T ss_pred cCCCEEEeeccCCcchhHH-HHHHHHHHhCCCCceEecccchHHHHHHHH---HcCCCEEEE
Confidence 45788887544 2222222 334443332 456665 688998887654 689999988
No 311
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=20.72 E-value=1.4e+02 Score=23.72 Aligned_cols=25 Identities=8% Similarity=-0.021 Sum_probs=16.6
Q ss_pred CHHHH-HHHHHHhhcccCeEEEecCC
Q 025857 168 TPSEA-QIFLEALEQGLGGIVLKVED 192 (247)
Q Consensus 168 ~~~EA-~val~~LE~G~DGVll~~~d 192 (247)
+.+.. +..-..+.+|+|||++.+.+
T Consensus 43 ~~~~~~~~~~~l~~~~vdgiIi~~~~ 68 (272)
T 3o74_A 43 QPDSERQLQQLFRARRCDALFVASCL 68 (272)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 34433 34444567899999998766
No 312
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=20.57 E-value=71 Score=26.51 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=19.4
Q ss_pred HHHHHHHHhhcccCeEEEecCCHHHH
Q 025857 171 EAQIFLEALEQGLGGIVLKVEDVKAV 196 (247)
Q Consensus 171 EA~val~~LE~G~DGVll~~~d~~ev 196 (247)
+.+..-..+++|+|||++.|.+....
T Consensus 48 ~~~~i~~~~~~~vdgiIi~~~~~~~~ 73 (330)
T 3uug_A 48 QLSQIENMVTKGVKVLVIASIDGTTL 73 (330)
T ss_dssp HHHHHHHHHHHTCSEEEECCSSGGGG
T ss_pred HHHHHHHHHHcCCCEEEEEcCCchhH
Confidence 44555566789999999999886543
No 313
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=20.52 E-value=93 Score=25.70 Aligned_cols=28 Identities=7% Similarity=0.114 Sum_probs=19.6
Q ss_pred CHHH-HHHHHHHhhcccCeEEEecCCHHH
Q 025857 168 TPSE-AQIFLEALEQGLGGIVLKVEDVKA 195 (247)
Q Consensus 168 ~~~E-A~val~~LE~G~DGVll~~~d~~e 195 (247)
+.++ .+..-..+++|+|||++.+.++..
T Consensus 43 ~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 71 (313)
T 3m9w_A 43 NEETQMSQIENMINRGVDVLVIIPYNGQV 71 (313)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECSSTTS
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCChhh
Confidence 4433 344445678999999999987764
No 314
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=20.50 E-value=2.2e+02 Score=26.46 Aligned_cols=30 Identities=17% Similarity=0.134 Sum_probs=23.4
Q ss_pred CceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 025857 159 GKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (247)
Q Consensus 159 ~~~lia--~v~~~~EA~val~~LE~G~DGVll~~~ 191 (247)
+..||+ .+.+..|+..|| -.|+|+|.+-+-
T Consensus 328 ~vpVia~GGi~~~~di~kal---alGA~~v~~g~~ 359 (486)
T 2cu0_A 328 GLYVIADGGIRYSGDIVKAI---AAGADAVMLGNL 359 (486)
T ss_dssp TCEEEEESCCCSHHHHHHHH---HTTCSEEEESTT
T ss_pred CCcEEecCCCCCHHHHHHHH---HcCCCceeeChh
Confidence 456888 678888877665 479999998775
No 315
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=20.11 E-value=72 Score=25.90 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=18.6
Q ss_pred HHHHHHHHhhcccCeEEEecCCHHHH
Q 025857 171 EAQIFLEALEQGLGGIVLKVEDVKAV 196 (247)
Q Consensus 171 EA~val~~LE~G~DGVll~~~d~~ev 196 (247)
+.+..-..+++|+|||++.+.+...+
T Consensus 53 ~~~~~~~l~~~~vdgiI~~~~~~~~~ 78 (293)
T 3l6u_A 53 EREQILEFVHLKVDAIFITTLDDVYI 78 (293)
T ss_dssp HHHHHHHHHHTTCSEEEEECSCTTTT
T ss_pred HHHHHHHHHHcCCCEEEEecCChHHH
Confidence 33445556789999999988776643
No 316
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=20.06 E-value=79 Score=25.98 Aligned_cols=25 Identities=8% Similarity=0.029 Sum_probs=18.4
Q ss_pred HHHHHHHHhhcccCeEEEecCCHHH
Q 025857 171 EAQIFLEALEQGLGGIVLKVEDVKA 195 (247)
Q Consensus 171 EA~val~~LE~G~DGVll~~~d~~e 195 (247)
+.+..-..+++++|||++.+.+.++
T Consensus 55 ~~~~~~~l~~~~vdgiIi~~~~~~~ 79 (289)
T 3k9c_A 55 EKVAVQALMRERCEAAILLGTRFDT 79 (289)
T ss_dssp HHHHHHHHTTTTEEEEEEETCCCCH
T ss_pred HHHHHHHHHhCCCCEEEEECCCCCH
Confidence 5555556678999999998866543
Done!