BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025858
(247 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 147 bits (371), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 115/178 (64%), Gaps = 17/178 (9%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+F+GG+ +T +HF YG+++ +++M+D+ TG+PRGFGF+ ++DPSV+D+V++
Sbjct: 6 GKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQ 65
Query: 79 DTHIINGKQVEIKRTI----------------PKGSGQSKDFKTKKIFVGGIPSSVSEDE 122
+ H I+ ++V++KR + + SG KTKKIFVGG+P +++++E
Sbjct: 66 EKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEE 125
Query: 123 LKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180
+ +F YG V + I+ D TNR RGFGFV FDSE+ VD +L K D++G QV +
Sbjct: 126 FRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHK-TFHDLSGKQVEV 182
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
KIF+GGLP T F ++F YG +TD IM D+ T +PRGFGF+++ VD V+
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHK 170
Query: 80 T-HIINGKQVEIKRTIPK 96
T H ++GKQVE+KR +PK
Sbjct: 171 TFHDLSGKQVEVKRALPK 188
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 114/166 (68%), Gaps = 6/166 (3%)
Query: 1 MGSKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPR 60
+G S S+ P+ PGK+FIGGL T+ + +FG+YGDI+++++MKD T + R
Sbjct: 16 LGPCSPSEVPN-----DPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSR 70
Query: 61 GFGFITYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVS 119
GFGF+T++DP+ VDKV+ + TH ++GK+V+ K P+ + +TKKIFVGG+ + +
Sbjct: 71 GFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPRRAHPKMVTRTKKIFVGGLSAPTT 130
Query: 120 EDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+++K++F ++G + + ++ D +TNR RGFGFV F SE+VVD++
Sbjct: 131 LEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVC 176
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE- 78
KIF+GGL TT +F ++G I D+++M D+ T + RGFGF+T+ VVDKV E
Sbjct: 119 KIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEI 178
Query: 79 DTHIINGKQVEIKRTIPK 96
H IN K VE K+ PK
Sbjct: 179 HFHEINNKMVECKKAQPK 196
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 41/61 (67%)
Query: 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
K+F+GG+ S + L+++F +YG + E +++D T RSRGFGFV F VD++L++
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 168 G 168
G
Sbjct: 90 G 90
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 138 bits (347), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 99/146 (67%), Gaps = 4/146 (2%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL DTT ++FGKYG +TD IMKD TG+ RGFGF+++ PS VD+V++
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219
Query: 80 THIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQII 139
HI++GK ++ KR IP+ + KT KIFVGGI V E + FFS++G +++ Q++
Sbjct: 220 QHILDGKVIDPKRAIPR----DEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLM 275
Query: 140 RDHETNRSRGFGFVIFDSEEVVDEML 165
D +T +SRGFGFV +DS + VD +
Sbjct: 276 LDKDTGQSRGFGFVTYDSADAVDRVC 301
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GKIF+GG+ D F + F ++G I D+ +M D+ TGQ RGFGF+TY VD+V +
Sbjct: 243 GKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ 302
Query: 79 DTHI-INGKQVEIKRTIPK 96
+ I +++EIKR P+
Sbjct: 303 NKFIDFKDRKIEIKRAEPR 321
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 44/65 (67%)
Query: 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
K+F+GG+ +ED L+ +F KYG V + +I++D T RSRGFGF+ F+ VDE++
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219
Query: 168 GNMID 172
+++D
Sbjct: 220 QHILD 224
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 136 bits (342), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 109/171 (63%), Gaps = 9/171 (5%)
Query: 2 GSKSKSDNPHTGDGASP-----GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYT 56
GS + N + SP GK+FIGGL +TT + +F ++G++ D +M+D T
Sbjct: 141 GSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTT 200
Query: 57 GQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPS 116
G+ RGFGF+T+ +P V++V+ H ++GK ++ KR IP+ + KT K+FVGG+P
Sbjct: 201 GRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAIPR----EEQEKTAKMFVGGVPG 256
Query: 117 SVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
+E+E +NFF+++G+VL+ ++ D +T R RGFGFV +++E V+ +S+
Sbjct: 257 DCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+F+GG+P D T F F ++G + D+ +M D+ TG+PRGFGF+TY + S V+ +
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
Query: 80 THI-INGKQVEIKRTIPKGS 98
+I I+GK VE+KR PK S
Sbjct: 308 PYITIHGKPVEVKRATPKAS 327
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 48/65 (73%)
Query: 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
K+F+GG+ ++D L+++F ++G+VL+ ++RD T RSRGFGF+ F + + V+E++SK
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 168 GNMID 172
+ +D
Sbjct: 224 EHHLD 228
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 134 bits (338), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 111/163 (68%), Gaps = 2/163 (1%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+F+GGL +TT +++F ++GDI D V+MK+ +G+ RGFGF+T+ADP+ V+ V++
Sbjct: 7 GKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQ 66
Query: 79 D-THIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137
+ H ++G+ ++ K P+ + K K+F+GG+PS+V+E +L+ FF++YGKV E
Sbjct: 67 NGPHTLDGRTIDPKPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVV 126
Query: 138 IIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180
I+ D E +SRGFGF+ F+ E V+ + ++ I++ G QV +
Sbjct: 127 IMYDQEKKKSRGFGFLSFEEESSVEHVTNE-RYINLNGKQVEI 168
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 54/82 (65%), Gaps = 2/82 (2%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+F+GGLP + T F +YG +T+ VIM D+ + RGFGF+++ + S V+ V +
Sbjct: 97 KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNE 156
Query: 80 THI-INGKQVEIKRTIPK-GSG 99
+I +NGKQVEIK+ P+ GSG
Sbjct: 157 RYINLNGKQVEIKKAEPRDGSG 178
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 127 bits (320), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 103/177 (58%), Gaps = 16/177 (9%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+F+GGL TT T +F +YG++ D VIMKD+ T Q RGFGF+ + DP+ V V+
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 79 D-THIINGKQVEIKRTIPKG--------------SGQSKDFKTKKIFVGGIPSSVSEDEL 123
H ++G+ ++ K P+G +S + K+ KIFVGGIP + E EL
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETEL 129
Query: 124 KNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180
+ +F K+G V E +I D E R RGFGF+ F+ E+ VD+ ++ + D+ G +V +
Sbjct: 130 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEV 185
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVV 73
D + KIF+GG+P + ++F K+G +T+ V++ D +PRGFGFIT+ D V
Sbjct: 108 DNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 167
Query: 74 DKVIE-DTHIINGKQVEIKRTIPKGS 98
D+ + H I GK+VE+KR P+ S
Sbjct: 168 DQAVNMHFHDIMGKKVEVKRAEPRDS 193
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 127 bits (320), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 98/164 (59%), Gaps = 16/164 (9%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+F+GGL TT T +F +YG++ D VIMKD+ T Q RGFGF+ + DP+ V V+
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 79 D-THIINGKQVEIKRTIPKG---------------SGQSKDFKTKKIFVGGIPSSVSEDE 122
H ++G+ ++ K P+G ++++ ++ KIFVGGIP + E E
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETE 129
Query: 123 LKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166
LK +F+++G V E +I D E R RGFGF+ F+ E+ VD+ ++
Sbjct: 130 LKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 173
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 55/94 (58%), Gaps = 2/94 (2%)
Query: 6 KSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFI 65
+ P T + S KIF+GG+P + ++F ++G +T+ V++ D +PRGFGFI
Sbjct: 102 QQKEPRTENSRS-NKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFI 160
Query: 66 TYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGS 98
T+ D VD+ + H I GK+VE+KR P+ S
Sbjct: 161 TFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDS 194
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 102/177 (57%), Gaps = 16/177 (9%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+F+GGL TT T +F +YG++ D VIMKD+ T Q RGFGF+ + DP+ V V+
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 79 D-THIINGKQVEIKRTIPKG--------------SGQSKDFKTKKIFVGGIPSSVSEDEL 123
H ++G+ ++ K P+G +S K+ KIFVGGIP + E EL
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETEL 129
Query: 124 KNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180
+ +F K+G V E +I D E R RGFGF+ F+ E+ VD+ ++ + D+ G +V +
Sbjct: 130 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEV 185
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVV 73
D + KIF+GG+P + ++F K+G +T+ V++ D +PRGFGFIT+ D V
Sbjct: 108 DSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 167
Query: 74 DKVIE-DTHIINGKQVEIKRTIPKGS 98
D+ + H I GK+VE+KR P+ S
Sbjct: 168 DQAVNMHFHDIMGKKVEVKRAEPRDS 193
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1
SV=1
Length = 328
Score = 124 bits (312), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 107/164 (65%), Gaps = 6/164 (3%)
Query: 3 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGF 62
S S +D+ H PGK+FIGGL T+ + +F K+G+I + ++M+D T + RGF
Sbjct: 10 SGSANDSQH-----DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGF 64
Query: 63 GFITYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSED 121
GF+T+ADP+ VDKV+ + H ++ K ++ K P+ + +TKKIFVGG+ ++ +
Sbjct: 65 GFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVE 124
Query: 122 ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
++K +F ++GKV + ++ D TNR RGFGFV F++E+VV+++
Sbjct: 125 DVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVC 168
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE- 78
KIF+GGL +T ++F ++G + D+++M D+ T + RGFGF+T+ + VV+KV E
Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 170
Query: 79 DTHIINGKQVEIKRTIPK 96
H IN K VE K+ PK
Sbjct: 171 HFHEINNKMVECKKAQPK 188
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%)
Query: 97 GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFD 156
GS K+F+GG+ S D L+++FSK+G++ E ++RD T RSRGFGFV F
Sbjct: 11 GSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70
Query: 157 SEEVVDEMLSK 167
VD++L +
Sbjct: 71 DPASVDKVLGQ 81
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1
SV=1
Length = 346
Score = 124 bits (312), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 107/164 (65%), Gaps = 6/164 (3%)
Query: 3 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGF 62
S S +D+ H PGK+FIGGL T+ + +F K+G+I + ++M+D T + RGF
Sbjct: 10 SGSANDSQH-----DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGF 64
Query: 63 GFITYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSED 121
GF+T+ADP+ VDKV+ + H ++ K ++ K P+ + +TKKIFVGG+ ++ +
Sbjct: 65 GFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVE 124
Query: 122 ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
++K +F ++GKV + ++ D TNR RGFGFV F++E+VV+++
Sbjct: 125 DVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVC 168
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE- 78
KIF+GGL +T ++F ++G + D+++M D+ T + RGFGF+T+ + VV+KV E
Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 170
Query: 79 DTHIINGKQVEIKRTIPK 96
H IN K VE K+ PK
Sbjct: 171 HFHEINNKMVECKKAQPK 188
Score = 64.3 bits (155), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%)
Query: 97 GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFD 156
GS K+F+GG+ S D L+++FSK+G++ E ++RD T RSRGFGFV F
Sbjct: 11 GSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70
Query: 157 SEEVVDEMLSK 167
VD++L +
Sbjct: 71 DPASVDKVLGQ 81
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 105/162 (64%), Gaps = 6/162 (3%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
+ D+PH P K+FIGGL TT ++FG++G++ + ++M+D T + RGFGF
Sbjct: 11 ASPDSPH-----DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGF 65
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDEL 123
+T+ D + VDKV+ + H ++ K ++ K P+ + +TKKIFVGG+ + + +++
Sbjct: 66 VTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDV 125
Query: 124 KNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
K++F ++GKV + ++ D TNR RGFGFV F+SE++V+++
Sbjct: 126 KHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC 167
Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE- 78
KIF+GGL +TT +F ++G + D+++M D+ T + RGFGF+T+ +V+KV E
Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 169
Query: 79 DTHIINGKQVEIKRTIPK 96
H IN K VE K+ PK
Sbjct: 170 HFHEINNKMVECKKAQPK 187
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 42/60 (70%)
Query: 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
K+F+GG+ +++ L+ +F ++G+V E ++RD T RSRGFGFV F + VD++L++
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 105/162 (64%), Gaps = 6/162 (3%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
+ D+PH P K+FIGGL TT ++FG++G++ + ++M+D T + RGFGF
Sbjct: 11 ASPDSPH-----DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGF 65
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDEL 123
+T+ D + VDKV+ + H ++ K ++ K P+ + +TKKIFVGG+ + + +++
Sbjct: 66 VTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDV 125
Query: 124 KNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
K++F ++GKV + ++ D TNR RGFGFV F+SE++V+++
Sbjct: 126 KHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC 167
Score = 64.3 bits (155), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE- 78
KIF+GGL +TT +F ++G + D+++M D+ T + RGFGF+T+ +V+KV E
Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 169
Query: 79 DTHIINGKQVEIKRTIPK 96
H IN K VE K+ PK
Sbjct: 170 HFHEINNKMVECKKAQPK 187
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 42/60 (70%)
Query: 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
K+F+GG+ +++ L+ +F ++G+V E ++RD T RSRGFGFV F + VD++L++
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 104/162 (64%), Gaps = 6/162 (3%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
+ D+PH P K+FIGGL TT ++FG++G++ + ++M+D T + RGFGF
Sbjct: 11 ASPDSPH-----DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGF 65
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDEL 123
+T+ D + VDKV+ + H ++ K ++ K P+ + +TKKIFVGG+ + + +++
Sbjct: 66 VTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDV 125
Query: 124 KNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
K +F ++GKV + ++ D TNR RGFGFV F+SE++V+++
Sbjct: 126 KQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC 167
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE- 78
KIF+GGL +TT ++F ++G + D+++M D+ T + RGFGF+T+ +V+KV E
Sbjct: 110 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 169
Query: 79 DTHIINGKQVEIKRTIPK 96
H IN K VE K+ PK
Sbjct: 170 HFHEINNKMVECKKAQPK 187
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 42/60 (70%)
Query: 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
K+F+GG+ +++ L+ +F ++G+V E ++RD T RSRGFGFV F + VD++L++
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
>sp|Q22037|ROA1_CAEEL Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis
elegans GN=hrp-1 PE=1 SV=1
Length = 346
Score = 117 bits (293), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 100/157 (63%), Gaps = 4/157 (2%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
KIF+GGL +TT + + ++G+ITD ++M+D T + RGFGF+T++ + VD ++
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83
Query: 80 T-HIINGKQVEIKRTIPKG--SGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
HII+GK V+ KR +P+ + + TK+++V G+ +ED L +F+KYG V +
Sbjct: 84 RPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKS 143
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMID 172
+II D T + RGFGFV FD + VD+ +L K +M++
Sbjct: 144 EIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVN 180
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Query: 6 KSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFI 65
+ D + S ++++ G+ +D T ++F KYG +T S I+ D+ T +PRGFGF+
Sbjct: 101 RDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFV 160
Query: 66 TYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
T+ D VD+ V++ +H++NG + ++++ + K
Sbjct: 161 TFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSK 192
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 49/80 (61%)
Query: 88 VEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRS 147
VEIK G + +KIFVGG+ S+ ++D ++ F+S++G++ + ++RD T RS
Sbjct: 4 VEIKAENGSGDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRS 63
Query: 148 RGFGFVIFDSEEVVDEMLSK 167
RGFGFV F + VD + +
Sbjct: 64 RGFGFVTFSGKTEVDAAMKQ 83
>sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
OS=Schistocerca americana GN=HNRNP PE=2 SV=1
Length = 342
Score = 115 bits (288), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 99/156 (63%), Gaps = 4/156 (2%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE- 78
K+FIGGL TT + +HF ++G+I D V+MKD T + RGFGFITY+ +VD
Sbjct: 18 KLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQNA 77
Query: 79 DTHIINGKQVEIKRTIPKGS-GQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G+ VE KR +P+ G+ + T KK+FVGGI + E++L+++F +YG V+
Sbjct: 78 RPHKVDGRVVEPKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVVSA 137
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMI 171
I+ D ET + RGF FV FD + VD++ LS+ + I
Sbjct: 138 AIVVDKETRKKRGFAFVEFDDYDPVDKICLSRNHQI 173
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVD 74
GA+ K+F+GG+ ++ +F +YG + + I+ D+ T + RGF F+ + D VD
Sbjct: 104 GATVKKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVD 163
Query: 75 KV-IEDTHIINGKQVEIKRTIPK 96
K+ + H I GK +++K+ +PK
Sbjct: 164 KICLSRNHQIRGKHIDVKKALPK 186
>sp|Q02926|RB97D_DROME Ribonucleoprotein RB97D OS=Drosophila melanogaster GN=Rb97D PE=2
SV=1
Length = 471
Score = 114 bits (285), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 93/151 (61%), Gaps = 3/151 (1%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL TT +G++G + D V+M+D T + RGFGFITY +VD+ E+
Sbjct: 33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQEN 92
Query: 80 -THIINGKQVEIKRTIPKGSGQSKD--FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
HII+GK VE KR +P+ +S++ KK+FVGG+ + E+ L+ +F ++G V+
Sbjct: 93 RPHIIDGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSV 152
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
+++ D T + RGF FV FD + VD+ + K
Sbjct: 153 KLLTDKTTGKRRGFAFVEFDDYDAVDKAILK 183
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 39/56 (69%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVD 162
+K+F+GG+ +E+ LK F+ ++GKV++ ++RD T RSRGFGF+ + +VD
Sbjct: 32 RKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVD 87
>sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens
GN=HNRNPA1L2 PE=2 SV=2
Length = 320
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 89/149 (59%), Gaps = 3/149 (2%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF+TYA VD +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74
Query: 80 T-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
T H ++G+ VE KR + + Q KKIFVGGI E L+++F +YGK+
Sbjct: 75 TPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+I+ D + + RGF FV FD + VD+++
Sbjct: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F +YG I IM DR +G+ RGF F
Sbjct: 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 150
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
+T+ D VDK VI+ H + G E+++ +PK
Sbjct: 151 VTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPK 183
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 40/60 (66%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166
+K+F+GG+ +++ L++ F ++G + + ++RD T RSRGFGFV + + E VD ++
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 111 bits (278), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 95/164 (57%), Gaps = 5/164 (3%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
SKS++P + K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF
Sbjct: 2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSED 121
+TYA VD + H ++G+ VE KR + + Q KKIFVGGI E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 122 ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
L+++F +YGK+ +I+ D + + RGF FV FD + VD+++
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 40/60 (66%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166
+K+F+GG+ +++ L++ F ++G + + ++RD T RSRGFGFV + + E VD ++
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
>sp|Q6URK4|ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 111 bits (277), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 89/149 (59%), Gaps = 3/149 (2%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-E 78
K+FIGGL +TT + +HF K+G +TD V+M+D T + RGFGF+TY+ VD +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 79 DTHIINGKQVEIKRTIPKGSG--QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G+ VE KR + + KKIFVGGI E L+++F KYGK+
Sbjct: 96 RPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETI 155
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+++ D ++ + RGF FV FD + VD+++
Sbjct: 156 EVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F KYG I +M+DR +G+ RGF F
Sbjct: 112 SREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAF 171
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGSGQS 101
+T+ D VDK V++ H ING E+K+ + K QS
Sbjct: 172 VTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQS 209
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVD-EML 165
+K+F+GG+ ++D L+ F K+G + + ++RD +T RSRGFGFV + E VD M
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 166 SKGNMID 172
++ + +D
Sbjct: 95 ARPHKVD 101
>sp|Q8BG05|ROA3_MOUSE Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 111 bits (277), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 89/149 (59%), Gaps = 3/149 (2%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-E 78
K+FIGGL +TT + +HF K+G +TD V+M+D T + RGFGF+TY+ VD +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 79 DTHIINGKQVEIKRTIPKGSG--QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G+ VE KR + + KKIFVGGI E L+++F KYGK+
Sbjct: 96 RPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETI 155
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+++ D ++ + RGF FV FD + VD+++
Sbjct: 156 EVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F KYG I +M+DR +G+ RGF F
Sbjct: 112 SREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAF 171
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGSGQS 101
+T+ D VDK V++ H ING E+K+ + K QS
Sbjct: 172 VTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQS 209
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVD-EML 165
+K+F+GG+ ++D L+ F K+G + + ++RD +T RSRGFGFV + E VD M
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 166 SKGNMID 172
++ + +D
Sbjct: 95 ARPHKVD 101
>sp|P51991|ROA3_HUMAN Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens
GN=HNRNPA3 PE=1 SV=2
Length = 378
Score = 111 bits (277), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 89/149 (59%), Gaps = 3/149 (2%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-E 78
K+FIGGL +TT + +HF K+G +TD V+M+D T + RGFGF+TY+ VD +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 79 DTHIINGKQVEIKRTIPKGSG--QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G+ VE KR + + KKIFVGGI E L+++F KYGK+
Sbjct: 96 RPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETI 155
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+++ D ++ + RGF FV FD + VD+++
Sbjct: 156 EVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F KYG I +M+DR +G+ RGF F
Sbjct: 112 SREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAF 171
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGSGQS 101
+T+ D VDK V++ H ING E+K+ + K QS
Sbjct: 172 VTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQS 209
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVD-EML 165
+K+F+GG+ ++D L+ F K+G + + ++RD +T RSRGFGFV + E VD M
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 166 SKGNMID 172
++ + +D
Sbjct: 95 ARPHKVD 101
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 110 bits (276), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 95/164 (57%), Gaps = 5/164 (3%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
SKS++P + K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF
Sbjct: 2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSED 121
+TYA VD + H ++G+ VE KR + + Q KKIFVGGI E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 122 ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
L+++F +YGK+ +I+ D + + RGF FV FD + VD+++
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 40/60 (66%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166
+K+F+GG+ +++ L++ F ++G + + ++RD T RSRGFGFV + + E VD ++
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 110 bits (276), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 95/164 (57%), Gaps = 5/164 (3%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
SKS++P + K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF
Sbjct: 2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSED 121
+TYA VD + H ++G+ VE KR + + Q KKIFVGGI E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 122 ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
L+++F +YGK+ +I+ D + + RGF FV FD + VD+++
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 40/60 (66%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166
+K+F+GG+ +++ L++ F ++G + + ++RD T RSRGFGFV + + E VD ++
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 110 bits (276), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 95/164 (57%), Gaps = 5/164 (3%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
SKS++P + K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF
Sbjct: 2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSED 121
+TYA VD + H ++G+ VE KR + + Q KKIFVGGI E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 122 ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
L+++F +YGK+ +I+ D + + RGF FV FD + VD+++
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 40/60 (66%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166
+K+F+GG+ +++ L++ F ++G + + ++RD T RSRGFGFV + + E VD ++
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1
PE=1 SV=2
Length = 320
Score = 110 bits (276), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 95/164 (57%), Gaps = 5/164 (3%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
SKS++P + K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF
Sbjct: 2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSED 121
+TYA VD + H ++G+ VE KR + + Q KKIFVGGI E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 122 ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
L+++F +YGK+ +I+ D + + RGF FV FD + VD+++
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 40/60 (66%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166
+K+F+GG+ +++ L++ F ++G + + ++RD T RSRGFGFV + + E VD ++
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta
GN=HNRNPA1 PE=2 SV=3
Length = 320
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 94/164 (57%), Gaps = 5/164 (3%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
SKS++P + K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF
Sbjct: 2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSED 121
+TYA VD + H ++G+ VE KR + + Q KKIFVGGI E
Sbjct: 60 VTYATVEKVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 122 ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
L+++F +YGK+ +I+ D + + RGF FV FD VD+++
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIV 163
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 40/60 (66%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166
+K+F+GG+ +++ L++ F ++G + + ++RD T RSRGFGFV + + E VD ++
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMN 73
>sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1
SV=3
Length = 344
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 103/182 (56%), Gaps = 13/182 (7%)
Query: 7 SDNPHTGDGASPG--KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
SDN G K+F+GGL +TT HFGKYG+I + D TG+ RGF F
Sbjct: 42 SDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAF 101
Query: 65 ITYADPSVVDKV-IEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDEL 123
I + + +DKV D HIIN K+V+ K+ + KIFVGG+ + +S++E+
Sbjct: 102 IVFTNTEAIDKVSAADEHIINSKKVDPKKAKARHG---------KIFVGGLTTEISDEEI 152
Query: 124 KNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGW 183
K +F ++G ++E ++ D + ++ +GF F+ FDSE+VV ++L K +AG +V +
Sbjct: 153 KTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLL-KTPKQKIAGKEVDVKRA 211
Query: 184 SP 185
+P
Sbjct: 212 TP 213
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus
laevis GN=hnrnpa1 PE=2 SV=1
Length = 365
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 95/163 (58%), Gaps = 4/163 (2%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-E 78
K+FIGGL +TT + +HF ++G +TD V+M+D + + RGFGF+TY VD +
Sbjct: 15 KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTA 74
Query: 79 DTHIINGKQVEIKRTIPK--GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G+ VE KR + + S KKIFVGGI ED L+ +F +YGK+
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGKIEVI 134
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQV 178
+I+ D + + RGF FV F+ + VD++ + K + ++ +QV
Sbjct: 135 EIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQKYHTVNNHNSQV 177
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT ++F +YG I IM DR +G+ RGF F
Sbjct: 91 SREDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAF 150
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
+T+ D VDK VI+ H +N ++++ + K
Sbjct: 151 VTFEDHDSVDKIVIQKYHTVNNHNSQVRKALSK 183
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 39/60 (65%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166
+K+F+GG+ +++ L+ F ++G + + ++RD + RSRGFGFV + S + VD ++
Sbjct: 14 RKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMT 73
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila
melanogaster GN=Hrb98DE PE=2 SV=1
Length = 365
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 96/163 (58%), Gaps = 9/163 (5%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL TT HF K+G+I D V+MKD T + RGFGFITY+ S++D+ +
Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKS 91
Query: 80 -THIINGKQVEIKRTIPKGSGQSKD--FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ VE KR +P+ S + KK+FVG + E ++++F +G +++
Sbjct: 92 RPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDI 151
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEMLSK------GNMIDM 173
I+ D ET + RGF FV FD + VD+++ + G M+D+
Sbjct: 152 NIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDV 194
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 57/95 (60%), Gaps = 3/95 (3%)
Query: 8 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITY 67
D+P+ G A+ K+F+G L D + +F +G+I D I+ D+ TG+ RGF F+ +
Sbjct: 113 DSPNAG--ATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEF 170
Query: 68 ADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSGQS 101
D VDKV+ + H +NGK V++K+ +PK + Q
Sbjct: 171 DDYDPVDKVVLQKQHQLNGKMVDVKKALPKQNDQQ 205
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-ML 165
+K+F+GG+ +++ LK F K+G +++ +++D T RSRGFGF+ + ++DE
Sbjct: 31 RKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQK 90
Query: 166 SKGNMID 172
S+ + ID
Sbjct: 91 SRPHKID 97
>sp|P51992|RO32_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 385
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 96/163 (58%), Gaps = 4/163 (2%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + +HF ++G +TD V+M+D T + RGFGF+TY+ VD +
Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA 87
Query: 80 T-HIINGKQVEIKRTIPK--GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G+ VE KR + + + KKIFVGGI E L+++F YGK+
Sbjct: 88 RPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYFEGYGKIETI 147
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQV 178
+++ D ++ + RGF FV FD + VD++ + K + I++ +V
Sbjct: 148 EVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINLHNCEV 190
Score = 64.3 bits (155), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F YG I +M+DR +G+ RGF F
Sbjct: 104 SREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAF 163
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGSGQS 101
+T+ D VDK V++ H IN E+K+ + K Q+
Sbjct: 164 VTFDDHDTVDKIVVQKYHTINLHNCEVKKALSKQEMQT 201
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166
+K+F+GG+ ++D L+ F ++GK+ + ++RD +T RSRGFGFV + E VD +S
Sbjct: 27 RKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMS 86
>sp|Q5RBU8|ROA2_PONAB Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii
GN=HNRNPA2B1 PE=2 SV=1
Length = 353
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 100/163 (61%), Gaps = 4/163 (2%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + ++ ++G +TD V+M+D + + RGFGF+T++ + VD +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 80 T-HIINGKQVEIKRTIPKG-SGQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ VE KR + + SG+ T KK+FVGGI E L+++F +YGK+
Sbjct: 82 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 141
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQV 178
+II D ++ + RGFGFV FD + VD++ L K + I+ +V
Sbjct: 142 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHHTINGHNAEV 184
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDK-VIE 78
K+F+GG+ +DT +F +YG I I+ DR +G+ RGFGF+T+ D VDK V++
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 79 DTHIINGKQVEIKRTIPK 96
H ING E+++ + +
Sbjct: 173 KHHTINGHNAEVRKALSR 190
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 93 TIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGF 152
T+P + + + +K+F+GG+ +E+ L+N++ ++GK+ + ++RD + RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 153 VIFDSEEVVD-EMLSKGNMID 172
V F S VD M ++ + ID
Sbjct: 67 VTFSSMAEVDAAMAARPHSID 87
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus
GN=Hnrnpa2b1 PE=1 SV=2
Length = 353
Score = 107 bits (267), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 94/149 (63%), Gaps = 3/149 (2%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + ++ ++G +TD V+M+D + + RGFGF+T++ + VD +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 80 T-HIINGKQVEIKRTIPKG-SGQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ VE KR + + SG+ T KK+FVGGI E L+++F +YGK+
Sbjct: 82 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 141
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+II D ++ + RGFGFV FD + VD+++
Sbjct: 142 EIITDRQSGKKRGFGFVTFDDHDPVDKIV 170
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDK-VIE 78
K+F+GG+ +DT +F +YG I I+ DR +G+ RGFGF+T+ D VDK V++
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 79 DTHIINGKQVEIKRTIPK 96
H ING E+++ + +
Sbjct: 173 KYHTINGHNAEVRKALSR 190
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 93 TIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGF 152
T+P + + + +K+F+GG+ +E+ L+N++ ++GK+ + ++RD + RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 153 VIFDSEEVVD-EMLSKGNMID 172
V F S VD M ++ + ID
Sbjct: 67 VTFSSMAEVDAAMAARPHSID 87
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens
GN=HNRNPA2B1 PE=1 SV=2
Length = 353
Score = 107 bits (267), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 94/149 (63%), Gaps = 3/149 (2%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + ++ ++G +TD V+M+D + + RGFGF+T++ + VD +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 80 T-HIINGKQVEIKRTIPKG-SGQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ VE KR + + SG+ T KK+FVGGI E L+++F +YGK+
Sbjct: 82 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 141
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+II D ++ + RGFGFV FD + VD+++
Sbjct: 142 EIITDRQSGKKRGFGFVTFDDHDPVDKIV 170
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDK-VIE 78
K+F+GG+ +DT +F +YG I I+ DR +G+ RGFGF+T+ D VDK V++
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 79 DTHIINGKQVEIKRTIPK 96
H ING E+++ + +
Sbjct: 173 KYHTINGHNAEVRKALSR 190
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 93 TIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGF 152
T+P + + + +K+F+GG+ +E+ L+N++ ++GK+ + ++RD + RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 153 VIFDSEEVVD-EMLSKGNMID 172
V F S VD M ++ + ID
Sbjct: 67 VTFSSMAEVDAAMAARPHSID 87
>sp|Q9TTV2|ROA2_SAGOE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus
GN=HNRNPA2B1 PE=1 SV=1
Length = 341
Score = 107 bits (267), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 94/149 (63%), Gaps = 3/149 (2%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL TT + ++ ++G +TD V+M+D + + RGFGF+T++ + VD +
Sbjct: 10 KLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 80 T-HIINGKQVEIKRTIPKG-SGQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ VE KR + + SG+ T KK+FVGGI E L+++F++YGK+
Sbjct: 70 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTI 129
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+II D ++ + RGFGFV FD + VD+++
Sbjct: 130 EIITDRQSGKKRGFGFVTFDDHDPVDKIV 158
Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDK-VIE 78
K+F+GG+ +DT +F +YG I I+ DR +G+ RGFGF+T+ D VDK V++
Sbjct: 101 KLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 160
Query: 79 DTHIINGKQVEIKRTIPK 96
H ING E+++ + +
Sbjct: 161 KYHTINGHNAEVRKALSR 178
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVD-EML 165
+K+F+GG+ +E+ L+N++ ++GK+ + ++RD + RSRGFGFV F S VD M
Sbjct: 9 RKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 166 SKGNMID 172
++ + ID
Sbjct: 69 ARPHSID 75
>sp|Q2HJ60|ROA2_BOVIN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus
GN=HNRNPA2B1 PE=2 SV=1
Length = 341
Score = 107 bits (267), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 94/149 (63%), Gaps = 3/149 (2%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + ++ ++G +TD V+M+D + + RGFGF+T++ + VD +
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 80 T-HIINGKQVEIKRTIPKG-SGQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ VE KR + + SG+ T KK+FVGGI E L+++F +YGK+
Sbjct: 70 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 129
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+II D ++ + RGFGFV FD + VD+++
Sbjct: 130 EIITDRQSGKKRGFGFVTFDDHDPVDKIV 158
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDK-VIE 78
K+F+GG+ +DT +F +YG I I+ DR +G+ RGFGF+T+ D VDK V++
Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 160
Query: 79 DTHIINGKQVEIKRTIPK 96
H ING E+++ + +
Sbjct: 161 KYHTINGHNAEVRKALSR 178
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVD-EML 165
+K+F+GG+ +E+ L+N++ ++GK+ + ++RD + RSRGFGFV F S VD M
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 166 SKGNMID 172
++ + ID
Sbjct: 69 ARPHSID 75
>sp|A7VJC2|ROA2_RAT Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus
GN=Hnrnpa2b1 PE=1 SV=1
Length = 353
Score = 107 bits (267), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 100/163 (61%), Gaps = 4/163 (2%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + ++ ++G +TD V+M+D + + RGFGF+T++ + VD +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 80 T-HIINGKQVEIKRTIPKG-SGQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ VE KR + + SG+ T KK+FVGGI E L+++F +YGK+
Sbjct: 82 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 141
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQV 178
+II D ++ + RGFGFV FD + VD++ L K + I+ +V
Sbjct: 142 EIITDRQSGKKRGFGFVTFDDHDPVDKIFLQKYHTINGHNAEV 184
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKV-IE 78
K+F+GG+ +DT +F +YG I I+ DR +G+ RGFGF+T+ D VDK+ ++
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQ 172
Query: 79 DTHIINGKQVEIKRTIPK 96
H ING E+++ + +
Sbjct: 173 KYHTINGHNAEVRKALSR 190
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 93 TIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGF 152
T+P + + + +K+F+GG+ +E+ L+N++ ++GK+ + ++RD + RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 153 VIFDSEEVVD-EMLSKGNMID 172
V F S VD M ++ + ID
Sbjct: 67 VTFSSMAEVDAAMAARPHSID 87
>sp|P48810|RB87F_DROME Heterogeneous nuclear ribonucleoprotein 87F OS=Drosophila
melanogaster GN=Hrb87F PE=2 SV=2
Length = 385
Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 88/149 (59%), Gaps = 3/149 (2%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE- 78
K+FIGGL TT HF K+G+I D V+MKD T + RGFGFITY+ ++D
Sbjct: 25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNA 84
Query: 79 DTHIINGKQVEIKRTIPKGSGQSKD--FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ VE KR +P+ S + KK+FVGG+ E+ L+ +F +G+++
Sbjct: 85 RPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSV 144
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEML 165
I+ D +T + RGF F+ FD + VD+++
Sbjct: 145 NIVSDKDTGKKRGFAFIEFDDYDPVDKII 173
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 8 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITY 67
D+P+ G A+ K+F+GGL D ++F +G I I+ D+ TG+ RGF FI +
Sbjct: 106 DSPNAG--ATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEF 163
Query: 68 ADPSVVDKVI-EDTHIINGKQVEIKRTIPK 96
D VDK+I + TH I K +++K+ I K
Sbjct: 164 DDYDPVDKIILQKTHSIKNKTLDVKKAIAK 193
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 38/56 (67%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVD 162
+K+F+GG+ ++D LK F K+G +++ +++D +T RSRGFGF+ + ++D
Sbjct: 24 RKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMID 79
>sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 358
Score = 104 bits (260), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 89/149 (59%), Gaps = 3/149 (2%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + + ++G +TD V+M+D + + RGFGF+T++ + VD +
Sbjct: 10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSA 69
Query: 80 T-HIINGKQVEIKRTIPK--GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ VE KR + + + KK+FVGGI E L+ +F +YGK+
Sbjct: 70 RPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIEST 129
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+II D ++ + RGFGFV F+ + VD+++
Sbjct: 130 EIITDKQSGKKRGFGFVTFNDHDPVDKIV 158
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 21/111 (18%)
Query: 7 SDNPHTGDG--------------ASPG------KIFIGGLPKDTTYATFNKHFGKYGDIT 46
S PHT DG A PG K+F+GG+ +DT ++F +YG I
Sbjct: 68 SARPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIE 127
Query: 47 DSVIMKDRYTGQPRGFGFITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
+ I+ D+ +G+ RGFGF+T+ D VDK V++ H ING E+++ + K
Sbjct: 128 STEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYHTINGHNAEVRKALSK 178
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 40/60 (66%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166
+K+F+GG+ +E+ L+NF+ ++G++ + ++RD + RSRGFGFV F VD +S
Sbjct: 9 RKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMS 68
>sp|P51968|RO31_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 373
Score = 104 bits (260), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 88/149 (59%), Gaps = 3/149 (2%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + +HF ++G +TD V+M+D T + RGFGF+TY+ VD +
Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA 87
Query: 80 T-HIINGKQVEIKRTIPK--GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G+ VE KR + + + KKIFVGGI E L+++ YGK+
Sbjct: 88 RPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYSESYGKIETI 147
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+++ D ++ + RGF FV FD + VD+++
Sbjct: 148 EVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 7/95 (7%)
Query: 14 DGASPG------KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITY 67
D A PG KIF+GG+ +DT + YG I +M+DR +G+ RGF F+T+
Sbjct: 107 DSARPGAHLTVKKIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTF 166
Query: 68 ADPSVVDK-VIEDTHIINGKQVEIKRTIPKGSGQS 101
D VDK V++ H ING E+K+ + K Q+
Sbjct: 167 DDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQT 201
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166
+K+F+GG+ ++D L+ F ++GK+ + ++RD +T RSRGFGFV + E VD +S
Sbjct: 27 RKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMS 86
>sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 346
Score = 103 bits (258), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 89/149 (59%), Gaps = 3/149 (2%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + ++ ++G +TD V+M+D + + RGFGF+T++ + VD +
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMAT 69
Query: 80 T-HIINGKQVEIKRTIPK--GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ VE KR + + + KK+FVGGI E L+ +F +YGK+
Sbjct: 70 RPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIDSI 129
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+II D ++ + RGF FV FD + VD+++
Sbjct: 130 EIITDKQSGKKRGFAFVTFDDHDPVDKIV 158
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 21/112 (18%)
Query: 10 PHTGDG--------------ASPG------KIFIGGLPKDTTYATFNKHFGKYGDITDSV 49
PHT DG A PG K+F+GG+ +DT ++F +YG I
Sbjct: 71 PHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIDSIE 130
Query: 50 IMKDRYTGQPRGFGFITYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGSGQ 100
I+ D+ +G+ RGF F+T+ D VDK V++ H ING E+++ + K Q
Sbjct: 131 IITDKQSGKKRGFAFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSKQEMQ 182
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVD-EML 165
+K+F+GG+ +E+ L+N++ ++G + + ++RD + RSRGFGFV F VD M
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMA 68
Query: 166 SKGNMID 172
++ + ID
Sbjct: 69 TRPHTID 75
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 90/153 (58%), Gaps = 13/153 (8%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL DTT +F K+GD+ D + D TG+ RGFGF+ + + VDKV++
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 80 -THIINGKQVEIKRTIPKGSGQSKDFKT----KKIFVGGIPSSVSEDELKNFFSKYGKVL 134
H +NGK ++ KR +K KT KKIFVGG+ E++++ +F +G+V
Sbjct: 156 KEHKLNGKVIDPKR--------AKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 207
Query: 135 EHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
++ D++TN+ RGF F+ F EE V +++ K
Sbjct: 208 SIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 240
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 89/152 (58%), Gaps = 13/152 (8%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+FIGGL DT+ ++ ++G++ D I D TG+ RGFGF+ + D + VDKV+E
Sbjct: 148 GKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLE 207
Query: 79 -DTHIINGKQVEIKRTIPKGSGQSKDFK----TKKIFVGGIPSSVSEDELKNFFSKYGKV 133
H ++GK ++ KR +K K KK+FVGG+ SE+++K +F +G++
Sbjct: 208 LKEHKLDGKLIDPKR--------AKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEI 259
Query: 134 LEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
++ D +TN RGF F+ + EE V ++L
Sbjct: 260 ENIELPMDTKTNERRGFCFITYTDEEPVKKLL 291
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI 77
P K+F+GGL DT+ ++FG +G+I + + D T + RGF FITY D V K++
Sbjct: 232 PKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL 291
Query: 78 EDT-HIINGKQVEIKRTIPK 96
E H I + EIK PK
Sbjct: 292 ESRYHQIGSGKCEIKVAQPK 311
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 96/171 (56%), Gaps = 16/171 (9%)
Query: 5 SKSDNPHTGDGAS---PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRG 61
S S HT A+ K+FIGGL DTT +F K+G++ D + D TG+ RG
Sbjct: 80 SNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 139
Query: 62 FGFITYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSGQSKDFKT----KKIFVGGIPS 116
FGF+ + + VDKV+ + H +NGK ++ KR +K KT KKIFVGG+
Sbjct: 140 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKR--------AKAMKTKEPVKKIFVGGLSP 191
Query: 117 SVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
E++++ +F +G+V ++ D++TN+ RGF F+ F EE V +++ K
Sbjct: 192 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 102 bits (253), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 90/153 (58%), Gaps = 13/153 (8%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-E 78
K+FIGGL DTT +F K+G++ D + D TG+ RGFGF+ + + VDKV+ +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 79 DTHIINGKQVEIKRTIPKGSGQSKDFKT----KKIFVGGIPSSVSEDELKNFFSKYGKVL 134
H +NGK ++ KR +K KT KKIFVGG+ E++++ +F +G+V
Sbjct: 158 KEHKLNGKVIDPKR--------AKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 209
Query: 135 EHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
++ D++TN+ RGF F+ F EE V +++ K
Sbjct: 210 SIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 87/149 (58%), Gaps = 5/149 (3%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+FIGGL DT+ ++ ++G++ D I D TG+ RGFGF+ + D + VDKV+E
Sbjct: 29 GKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLE 88
Query: 79 -DTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137
H ++GK ++ KR + KK+FVGG+ SE+++K +F +G++ +
Sbjct: 89 LKEHKLDGKLIDPKRAKALKGKEP----PKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE 144
Query: 138 IIRDHETNRSRGFGFVIFDSEEVVDEMLS 166
+ D +TN RGF F+ + EE V ++L
Sbjct: 145 LPMDTKTNERRGFCFITYTDEEPVKKLLE 173
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI 77
P K+F+GGL DT+ ++FG +G+I + + D T + RGF FITY D V K++
Sbjct: 113 PKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL 172
Query: 78 EDT-HIINGKQVEIKRTIPK 96
E H I + EIK PK
Sbjct: 173 ESRYHQIGSGKCEIKVAQPK 192
>sp|Q9CX86|ROA0_MOUSE Heterogeneous nuclear ribonucleoprotein A0 OS=Mus musculus
GN=Hnrnpa0 PE=1 SV=1
Length = 305
Score = 101 bits (251), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 86/148 (58%), Gaps = 3/148 (2%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL T+ + HF +G +TD V++ + T + R FGF+TY++ D +
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 80 T-HIINGKQVEIKRTIPK--GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
+ H ++G VE+KR + + + K KK+FVGG+ V+E +L FS++G V +
Sbjct: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKA 127
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM 164
+II D ++ + RGFGFV F S + D+
Sbjct: 128 EIIADKQSGKKRGFGFVYFQSHDAADKA 155
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G A K+F+GGL D +HF ++G + + I+ D+ +G+ RGFGF
Sbjct: 84 SREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGF 143
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
+ + DK + H I G +VE+K+ +PK
Sbjct: 144 VYFQSHDAADKAAVVKFHPIQGHRVEVKKAVPK 176
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
K+F+GG+ SE L+ F +G + + ++ + +T RSR FGFV + + E D ++
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 168 ------GNMIDM 173
GN +++
Sbjct: 68 SPHAVDGNTVEL 79
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 101 bits (251), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 88/151 (58%), Gaps = 13/151 (8%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE- 78
K+FIGGL DT+ ++ ++G++ D I D TG+ RGFGF+ + D + VDKV+E
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 111
Query: 79 DTHIINGKQVEIKRTIPKGSGQSKDFK----TKKIFVGGIPSSVSEDELKNFFSKYGKVL 134
H ++GK ++ KR +K K KK+FVGG+ SE+++K +F +G++
Sbjct: 112 KEHKLDGKLIDPKR--------AKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIE 163
Query: 135 EHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
++ D +TN RGF F+ + EE V ++L
Sbjct: 164 NIELPMDTKTNERRGFCFITYTDEEPVKKLL 194
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI 77
P K+F+GGL DT+ ++FG +G+I + + D T + RGF FITY D V K++
Sbjct: 135 PKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL 194
Query: 78 EDT-HIINGKQVEIKRTIPK 96
E H I + EIK PK
Sbjct: 195 ESRYHQIGSGKCEIKVAQPK 214
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 88/149 (59%), Gaps = 7/149 (4%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+FIGGL DT+ ++ ++G++ D I D TG+ RGFGF+ + D + V+KV+E
Sbjct: 30 GKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLE 89
Query: 79 -DTHIINGKQVEIKRTIP-KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++GK ++ KR KG KK+FVGG+ SE+++K +F +G++
Sbjct: 90 LKEHKLDGKLIDPKRAKALKGK-----EPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENI 144
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEML 165
++ D +TN RGF F+ + EE V ++L
Sbjct: 145 ELPMDTKTNERRGFCFITYTDEEPVKKLL 173
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI 77
P K+F+GGL DT+ ++FG +G+I + + D T + RGF FITY D V K++
Sbjct: 114 PKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL 173
Query: 78 EDT-HIINGKQVEIKRTIPK 96
E H I + EIK PK
Sbjct: 174 ESRYHQIGSGKCEIKVAQPK 193
>sp|Q13151|ROA0_HUMAN Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens
GN=HNRNPA0 PE=1 SV=1
Length = 305
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 86/148 (58%), Gaps = 3/148 (2%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL T+ + HF +G +TD V++ + T + R FGF+TY++ D +
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 80 T-HIINGKQVEIKRTIPK--GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
+ H ++G VE+KR + + + K KK+FVGG+ V+E +L FS++G V +
Sbjct: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 127
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM 164
+II D ++ + RGFGFV F + + D+
Sbjct: 128 EIIADKQSGKKRGFGFVYFQNHDAADKA 155
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G A K+F+GGL D +HF ++G + + I+ D+ +G+ RGFGF
Sbjct: 84 SREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGF 143
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
+ + + DK + H I G +VE+K+ +PK
Sbjct: 144 VYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPK 176
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
K+F+GG+ SE L+ F +G + + ++ + +T RSR FGFV + + E D ++
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 168 ------GNMIDM 173
GN +++
Sbjct: 68 SPHAVDGNTVEL 79
>sp|Q6NU14|HNDLB_XENLA Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis
GN=hnrpdl-b PE=2 SV=1
Length = 291
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 88/148 (59%), Gaps = 5/148 (3%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE- 78
K+FIGGL DT+ ++ ++G++ D I D TG+ RGFGF+ + D VDKV+E
Sbjct: 35 KMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 94
Query: 79 DTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQI 138
H ++GK ++ KR + Q K+ KK+FVGG+ +E+++K +F +G++ ++
Sbjct: 95 KEHKLDGKLIDPKRA---KALQGKE-PPKKVFVGGLSPETTEEQIKQYFGGFGEIENIEL 150
Query: 139 IRDHETNRSRGFGFVIFDSEEVVDEMLS 166
D +TN RGF FV + EE V ++L
Sbjct: 151 PMDTKTNERRGFCFVTYTDEEPVQKLLE 178
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI 77
P K+F+GGL +TT ++FG +G+I + + D T + RGF F+TY D V K++
Sbjct: 118 PKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTDEEPVQKLL 177
Query: 78 EDT-HIINGKQVEIKRTIPK 96
E H I + EIK PK
Sbjct: 178 ESRFHQIGTGKCEIKAAQPK 197
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.142 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,290,598
Number of Sequences: 539616
Number of extensions: 4375924
Number of successful extensions: 12816
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 181
Number of HSP's that attempted gapping in prelim test: 10137
Number of HSP's gapped (non-prelim): 2074
length of query: 247
length of database: 191,569,459
effective HSP length: 114
effective length of query: 133
effective length of database: 130,053,235
effective search space: 17297080255
effective search space used: 17297080255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)