Query 025858
Match_columns 247
No_of_seqs 226 out of 2110
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 10:20:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025858.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025858hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 5.1E-36 1.1E-40 256.9 22.6 173 13-189 102-278 (346)
2 KOG0148 Apoptosis-promoting RN 100.0 3.5E-34 7.6E-39 227.6 16.8 175 11-191 55-243 (321)
3 TIGR01645 half-pint poly-U bin 100.0 7.1E-34 1.5E-38 256.0 20.6 173 16-188 105-286 (612)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 9E-33 1.9E-37 240.0 21.9 167 17-187 2-172 (352)
5 TIGR01622 SF-CC1 splicing fact 100.0 3.2E-32 7E-37 244.3 23.1 174 12-185 83-265 (457)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 9E-32 2E-36 233.7 22.7 173 16-188 87-351 (352)
7 KOG0144 RNA-binding protein CU 100.0 2.3E-32 5.1E-37 229.5 13.7 174 14-191 30-211 (510)
8 TIGR01628 PABP-1234 polyadenyl 100.0 1.5E-30 3.3E-35 238.9 20.0 165 20-187 2-168 (562)
9 KOG0145 RNA-binding protein EL 100.0 4.7E-30 1E-34 203.2 15.4 168 15-186 38-209 (360)
10 TIGR01628 PABP-1234 polyadenyl 100.0 1.3E-29 2.8E-34 232.7 19.8 174 14-189 174-367 (562)
11 TIGR01648 hnRNP-R-Q heterogene 100.0 5.7E-29 1.2E-33 224.0 22.0 165 15-188 55-309 (578)
12 KOG0117 Heterogeneous nuclear 100.0 4.5E-29 9.7E-34 210.6 17.1 168 16-191 81-336 (506)
13 KOG0131 Splicing factor 3b, su 100.0 2.7E-29 5.8E-34 189.2 12.5 173 16-191 7-182 (203)
14 TIGR01642 U2AF_lg U2 snRNP aux 100.0 5.8E-28 1.2E-32 219.5 21.3 169 12-186 169-375 (509)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 7.2E-28 1.6E-32 216.8 20.6 160 17-186 1-174 (481)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 4.6E-27 1E-31 211.5 20.9 165 15-186 272-480 (481)
17 TIGR01642 U2AF_lg U2 snRNP aux 100.0 6.6E-27 1.4E-31 212.6 21.0 170 16-185 293-501 (509)
18 KOG0145 RNA-binding protein EL 99.9 1.1E-26 2.4E-31 184.1 15.7 174 13-186 122-358 (360)
19 KOG0127 Nucleolar protein fibr 99.9 1.4E-26 3E-31 199.8 16.1 172 19-191 6-201 (678)
20 KOG0124 Polypyrimidine tract-b 99.9 2.3E-26 5E-31 190.1 11.2 169 19-187 114-291 (544)
21 KOG0127 Nucleolar protein fibr 99.9 2.3E-25 4.9E-30 192.3 17.3 170 18-188 117-380 (678)
22 TIGR01622 SF-CC1 splicing fact 99.9 2.1E-24 4.6E-29 193.7 21.8 165 17-185 185-447 (457)
23 KOG0109 RNA-binding protein LA 99.9 1.3E-25 2.9E-30 180.5 10.9 148 19-188 3-152 (346)
24 KOG4205 RNA-binding protein mu 99.9 2.7E-25 5.9E-30 185.8 12.0 175 17-192 5-182 (311)
25 KOG0123 Polyadenylate-binding 99.9 2.7E-24 5.8E-29 185.6 16.9 154 19-190 2-157 (369)
26 KOG0148 Apoptosis-promoting RN 99.9 8.3E-25 1.8E-29 174.3 10.5 142 14-188 2-144 (321)
27 KOG0146 RNA-binding protein ET 99.9 1.5E-24 3.2E-29 172.7 10.9 174 15-189 16-368 (371)
28 KOG0147 Transcriptional coacti 99.9 3.4E-24 7.3E-29 185.6 7.0 174 12-185 173-357 (549)
29 KOG0144 RNA-binding protein CU 99.9 4.5E-23 9.8E-28 173.8 11.6 171 16-187 122-505 (510)
30 KOG0110 RNA-binding protein (R 99.9 8.7E-23 1.9E-27 181.4 12.6 169 20-188 517-695 (725)
31 KOG0123 Polyadenylate-binding 99.9 1.9E-21 4.1E-26 168.0 15.1 161 21-185 79-245 (369)
32 TIGR01645 half-pint poly-U bin 99.9 1.6E-20 3.5E-25 169.8 21.3 79 16-94 202-282 (612)
33 KOG0105 Alternative splicing f 99.8 4.1E-19 8.8E-24 134.6 14.4 151 15-175 3-177 (241)
34 PLN03134 glycine-rich RNA-bind 99.8 3.8E-19 8.2E-24 134.8 11.5 89 103-191 31-119 (144)
35 KOG4206 Spliceosomal protein s 99.8 2.1E-18 4.5E-23 135.2 14.8 164 13-184 4-220 (221)
36 KOG0147 Transcriptional coacti 99.8 8.6E-19 1.9E-23 152.3 11.9 160 19-183 279-525 (549)
37 KOG4211 Splicing factor hnRNP- 99.8 4.7E-18 1E-22 146.0 16.0 167 14-184 6-180 (510)
38 PLN03134 glycine-rich RNA-bind 99.8 1.4E-17 3E-22 126.2 12.8 86 13-98 29-116 (144)
39 TIGR01659 sex-lethal sex-letha 99.7 6.1E-17 1.3E-21 139.3 11.7 88 102-189 103-190 (346)
40 KOG1548 Transcription elongati 99.7 7.3E-16 1.6E-20 127.3 16.9 170 15-189 131-355 (382)
41 PF00076 RRM_1: RNA recognitio 99.7 1.5E-16 3.3E-21 105.5 9.1 70 109-179 1-70 (70)
42 KOG4212 RNA-binding protein hn 99.7 1.7E-15 3.7E-20 128.6 16.3 163 18-182 44-290 (608)
43 KOG0106 Alternative splicing f 99.7 1.4E-16 3.1E-21 126.0 7.4 149 19-183 2-168 (216)
44 KOG0122 Translation initiation 99.7 3.7E-16 8.1E-21 123.5 9.6 84 103-186 186-269 (270)
45 KOG0149 Predicted RNA-binding 99.7 1.6E-16 3.5E-21 125.0 7.0 81 15-95 9-90 (247)
46 KOG0124 Polypyrimidine tract-b 99.7 3E-15 6.6E-20 124.5 14.3 169 14-182 206-531 (544)
47 PF00076 RRM_1: RNA recognitio 99.7 8.9E-16 1.9E-20 101.8 8.7 68 21-89 1-70 (70)
48 KOG0149 Predicted RNA-binding 99.6 3.9E-16 8.5E-21 122.9 7.9 82 103-185 9-90 (247)
49 KOG0110 RNA-binding protein (R 99.6 1.4E-15 3.1E-20 135.8 12.4 165 14-184 381-596 (725)
50 KOG0120 Splicing factor U2AF, 99.6 1.7E-15 3.7E-20 133.2 12.7 176 10-185 281-491 (500)
51 KOG0122 Translation initiation 99.6 1.8E-15 3.9E-20 119.6 10.7 80 17-96 188-269 (270)
52 KOG0125 Ataxin 2-binding prote 99.6 1.2E-15 2.5E-20 125.3 8.6 86 104-191 94-179 (376)
53 COG0724 RNA-binding proteins ( 99.6 1.1E-14 2.4E-19 121.1 13.9 149 18-166 115-285 (306)
54 PF14259 RRM_6: RNA recognitio 99.6 3.6E-15 7.7E-20 99.2 8.5 70 109-179 1-70 (70)
55 TIGR01648 hnRNP-R-Q heterogene 99.6 6.1E-15 1.3E-19 133.6 11.5 113 70-183 19-135 (578)
56 PF14259 RRM_6: RNA recognitio 99.6 7.8E-15 1.7E-19 97.5 8.7 68 21-89 1-70 (70)
57 KOG1457 RNA binding protein (c 99.6 6.1E-14 1.3E-18 109.7 14.3 155 16-174 32-274 (284)
58 PLN03120 nucleic acid binding 99.6 9.4E-15 2E-19 118.7 10.3 76 106-185 4-79 (260)
59 KOG1190 Polypyrimidine tract-b 99.6 1.4E-13 3.1E-18 116.0 16.1 159 18-185 297-490 (492)
60 KOG0107 Alternative splicing f 99.6 1E-14 2.2E-19 110.0 7.8 79 105-188 9-87 (195)
61 PLN03120 nucleic acid binding 99.6 2.8E-14 6.1E-19 115.9 10.4 76 18-96 4-80 (260)
62 KOG0113 U1 small nuclear ribon 99.6 2.6E-14 5.7E-19 116.0 9.9 83 12-94 95-179 (335)
63 KOG0126 Predicted RNA-binding 99.5 6.4E-16 1.4E-20 117.0 -0.1 101 82-183 12-112 (219)
64 KOG0121 Nuclear cap-binding pr 99.5 1.9E-14 4.2E-19 103.0 6.8 81 14-94 32-114 (153)
65 KOG0111 Cyclophilin-type pepti 99.5 7.2E-15 1.6E-19 114.5 4.3 86 103-188 7-92 (298)
66 KOG0131 Splicing factor 3b, su 99.5 7.7E-15 1.7E-19 111.2 4.3 82 104-185 7-88 (203)
67 smart00362 RRM_2 RNA recogniti 99.5 1E-13 2.2E-18 91.5 9.2 72 108-181 1-72 (72)
68 KOG0113 U1 small nuclear ribon 99.5 8.2E-14 1.8E-18 113.2 10.2 87 98-184 93-179 (335)
69 KOG0130 RNA-binding protein RB 99.5 3.2E-14 6.9E-19 102.8 6.9 87 102-188 68-154 (170)
70 KOG1365 RNA-binding protein Fu 99.5 2.4E-14 5.2E-19 119.8 6.7 167 17-185 160-361 (508)
71 KOG4207 Predicted splicing fac 99.5 2.8E-14 6E-19 110.3 6.5 81 104-184 11-91 (256)
72 smart00360 RRM RNA recognition 99.5 1.2E-13 2.6E-18 90.8 8.7 71 111-181 1-71 (71)
73 PLN03213 repressor of silencin 99.5 7.6E-14 1.7E-18 120.3 9.2 79 103-185 7-87 (759)
74 PLN03121 nucleic acid binding 99.5 2E-13 4.4E-18 109.2 10.4 77 105-185 4-80 (243)
75 KOG0121 Nuclear cap-binding pr 99.5 7.2E-14 1.6E-18 100.1 6.8 81 104-184 34-114 (153)
76 KOG4212 RNA-binding protein hn 99.5 1.3E-12 2.9E-17 111.2 14.9 70 108-182 538-607 (608)
77 KOG0126 Predicted RNA-binding 99.5 8.8E-15 1.9E-19 110.9 1.3 86 10-95 27-114 (219)
78 PLN03121 nucleic acid binding 99.5 2.7E-13 6E-18 108.5 9.8 75 17-94 4-79 (243)
79 KOG0125 Ataxin 2-binding prote 99.5 2.4E-13 5.2E-18 111.8 9.6 86 12-99 90-177 (376)
80 KOG0117 Heterogeneous nuclear 99.5 6E-13 1.3E-17 113.5 11.5 115 66-183 40-161 (506)
81 KOG0107 Alternative splicing f 99.5 3E-13 6.4E-18 102.1 8.6 77 17-98 9-87 (195)
82 KOG0114 Predicted RNA-binding 99.5 7.7E-13 1.7E-17 91.4 9.4 85 9-96 9-95 (124)
83 smart00362 RRM_2 RNA recogniti 99.4 8E-13 1.7E-17 87.1 8.7 69 20-90 1-71 (72)
84 cd00590 RRM RRM (RNA recogniti 99.4 1.5E-12 3.2E-17 86.3 9.9 74 108-182 1-74 (74)
85 KOG1190 Polypyrimidine tract-b 99.4 6.9E-13 1.5E-17 112.0 9.8 160 13-183 23-225 (492)
86 KOG0108 mRNA cleavage and poly 99.4 3.8E-13 8.3E-18 117.7 8.4 82 107-188 19-100 (435)
87 KOG1456 Heterogeneous nuclear 99.4 4.7E-12 1E-16 105.9 13.9 167 10-187 23-200 (494)
88 KOG4207 Predicted splicing fac 99.4 2.9E-13 6.4E-18 104.7 6.2 83 12-94 7-91 (256)
89 KOG0130 RNA-binding protein RB 99.4 6.4E-13 1.4E-17 96.1 7.3 88 12-99 66-155 (170)
90 COG0724 RNA-binding proteins ( 99.4 1.2E-12 2.7E-17 108.6 9.9 79 106-184 115-193 (306)
91 KOG0114 Predicted RNA-binding 99.4 2.2E-12 4.7E-17 89.2 9.1 80 104-186 16-95 (124)
92 smart00361 RRM_1 RNA recogniti 99.4 1.5E-12 3.1E-17 86.6 7.9 61 120-180 2-69 (70)
93 smart00360 RRM RNA recognition 99.4 1.8E-12 3.8E-17 85.1 8.1 68 23-90 1-70 (71)
94 KOG0120 Splicing factor U2AF, 99.4 1.5E-12 3.3E-17 114.7 9.8 172 13-190 170-373 (500)
95 KOG0108 mRNA cleavage and poly 99.4 1.6E-12 3.4E-17 113.9 9.0 80 19-98 19-100 (435)
96 KOG0129 Predicted RNA-binding 99.4 2.5E-11 5.4E-16 105.6 15.8 172 10-183 251-451 (520)
97 PLN03213 repressor of silencin 99.4 3E-12 6.5E-17 110.6 9.1 78 15-96 7-88 (759)
98 PF13893 RRM_5: RNA recognitio 99.4 2.6E-12 5.7E-17 81.4 6.5 56 123-183 1-56 (56)
99 KOG0105 Alternative splicing f 99.3 2.6E-12 5.5E-17 97.9 7.1 80 104-186 4-83 (241)
100 cd00590 RRM RRM (RNA recogniti 99.3 1.2E-11 2.6E-16 81.8 9.4 72 20-92 1-74 (74)
101 KOG0146 RNA-binding protein ET 99.3 1.7E-12 3.7E-17 104.2 6.0 100 85-189 2-104 (371)
102 KOG0111 Cyclophilin-type pepti 99.3 1.5E-12 3.3E-17 101.7 5.4 84 16-99 8-93 (298)
103 KOG0109 RNA-binding protein LA 99.3 4.4E-12 9.6E-17 102.9 6.2 74 107-188 3-76 (346)
104 KOG1456 Heterogeneous nuclear 99.3 3.9E-10 8.4E-15 94.6 16.7 159 11-176 280-475 (494)
105 KOG0226 RNA-binding proteins [ 99.2 1.5E-11 3.3E-16 98.1 6.7 168 17-185 95-269 (290)
106 KOG4454 RNA binding protein (R 99.2 3.8E-12 8.2E-17 99.4 3.0 150 15-180 6-157 (267)
107 KOG4211 Splicing factor hnRNP- 99.2 2.3E-10 5E-15 99.1 12.3 161 16-180 101-352 (510)
108 KOG4208 Nucleolar RNA-binding 99.2 6.8E-11 1.5E-15 91.8 8.0 85 102-186 45-130 (214)
109 smart00361 RRM_1 RNA recogniti 99.2 1.2E-10 2.5E-15 77.3 7.7 59 32-90 2-69 (70)
110 KOG0128 RNA-binding protein SA 99.2 1.2E-12 2.7E-17 119.3 -2.9 149 16-185 665-814 (881)
111 KOG4206 Spliceosomal protein s 99.2 1.2E-10 2.7E-15 91.7 7.9 84 105-191 8-95 (221)
112 PF13893 RRM_5: RNA recognitio 99.1 2.3E-10 5E-15 72.4 7.1 54 35-93 1-56 (56)
113 KOG0153 Predicted RNA-binding 99.1 2.1E-10 4.7E-15 95.3 8.5 80 10-95 220-302 (377)
114 KOG0153 Predicted RNA-binding 99.1 1.7E-10 3.7E-15 95.9 7.9 79 101-185 223-302 (377)
115 KOG4205 RNA-binding protein mu 99.1 1.7E-10 3.7E-15 97.1 7.1 153 17-169 96-255 (311)
116 KOG0415 Predicted peptidyl pro 99.1 1.5E-10 3.1E-15 96.5 6.3 82 104-185 237-318 (479)
117 KOG0415 Predicted peptidyl pro 99.1 1.8E-10 3.9E-15 96.0 6.7 86 10-95 231-318 (479)
118 KOG4210 Nuclear localization s 99.1 1.6E-10 3.4E-15 96.9 6.0 173 16-189 86-267 (285)
119 KOG0112 Large RNA-binding prot 99.1 6.2E-11 1.3E-15 108.9 3.9 168 11-191 365-536 (975)
120 KOG0132 RNA polymerase II C-te 99.1 2.5E-10 5.5E-15 103.5 7.5 80 105-190 420-499 (894)
121 KOG0132 RNA polymerase II C-te 99.1 2.8E-10 6.1E-15 103.2 7.6 108 16-129 419-529 (894)
122 KOG4208 Nucleolar RNA-binding 99.1 6.3E-10 1.4E-14 86.4 8.3 85 12-96 43-130 (214)
123 KOG1365 RNA-binding protein Fu 99.0 5.1E-09 1.1E-13 88.2 11.4 166 13-180 55-237 (508)
124 KOG4661 Hsp27-ERE-TATA-binding 98.9 2.3E-09 5.1E-14 94.4 7.7 83 106-188 405-487 (940)
125 KOG0116 RasGAP SH3 binding pro 98.8 9.1E-09 2E-13 90.0 8.0 79 18-96 288-367 (419)
126 KOG4307 RNA binding protein RB 98.8 3.9E-08 8.4E-13 88.6 11.4 75 108-182 869-943 (944)
127 KOG4661 Hsp27-ERE-TATA-binding 98.8 2E-08 4.3E-13 88.7 8.6 84 13-96 400-485 (940)
128 KOG0533 RRM motif-containing p 98.8 2.5E-08 5.5E-13 81.0 8.5 84 105-189 82-165 (243)
129 PF04059 RRM_2: RNA recognitio 98.8 5.5E-08 1.2E-12 68.0 8.9 76 19-94 2-85 (97)
130 KOG4660 Protein Mei2, essentia 98.7 1.6E-08 3.5E-13 89.1 6.0 158 15-185 72-249 (549)
131 KOG2193 IGF-II mRNA-binding pr 98.7 7.7E-10 1.7E-14 94.2 -2.1 151 19-185 2-156 (584)
132 KOG4209 Splicing factor RNPS1, 98.7 1.8E-08 3.9E-13 81.9 5.6 86 101-187 96-181 (231)
133 KOG0533 RRM motif-containing p 98.7 5.8E-08 1.3E-12 78.9 8.3 84 14-98 79-164 (243)
134 KOG4660 Protein Mei2, essentia 98.7 1.1E-08 2.4E-13 90.1 4.3 75 100-179 69-143 (549)
135 KOG0116 RasGAP SH3 binding pro 98.7 5.1E-08 1.1E-12 85.3 7.7 81 107-188 289-369 (419)
136 PF04059 RRM_2: RNA recognitio 98.7 1.9E-07 4E-12 65.4 9.0 79 107-185 2-86 (97)
137 KOG0226 RNA-binding proteins [ 98.7 2.6E-08 5.7E-13 79.8 4.8 85 9-93 181-267 (290)
138 KOG0151 Predicted splicing reg 98.6 5.7E-08 1.2E-12 87.7 6.6 85 103-187 171-258 (877)
139 KOG4307 RNA binding protein RB 98.6 1.2E-07 2.6E-12 85.6 8.1 172 13-185 306-513 (944)
140 KOG0106 Alternative splicing f 98.6 3.3E-08 7.2E-13 78.6 4.1 71 107-185 2-72 (216)
141 KOG0151 Predicted splicing reg 98.6 1.6E-07 3.5E-12 84.9 8.6 80 15-94 171-255 (877)
142 KOG4454 RNA binding protein (R 98.6 3.3E-08 7.1E-13 77.6 2.4 77 104-182 7-83 (267)
143 KOG1548 Transcription elongati 98.5 4.5E-07 9.7E-12 75.8 8.1 79 105-184 133-219 (382)
144 KOG4209 Splicing factor RNPS1, 98.5 2E-07 4.2E-12 75.9 5.8 85 12-96 95-180 (231)
145 KOG1457 RNA binding protein (c 98.5 1.1E-06 2.4E-11 69.4 9.2 87 104-190 32-122 (284)
146 KOG4676 Splicing factor, argin 98.5 1.2E-07 2.5E-12 80.4 4.0 157 18-179 7-219 (479)
147 PF11608 Limkain-b1: Limkain b 98.3 2.7E-06 5.9E-11 57.0 6.8 69 107-185 3-76 (90)
148 KOG1995 Conserved Zn-finger pr 98.2 2.4E-06 5.2E-11 72.0 4.8 86 103-188 63-156 (351)
149 KOG0128 RNA-binding protein SA 98.1 2.7E-07 5.9E-12 85.1 -3.1 149 19-167 572-728 (881)
150 KOG1995 Conserved Zn-finger pr 98.0 8.2E-06 1.8E-10 68.8 5.3 96 1-96 49-154 (351)
151 PF08777 RRM_3: RNA binding mo 98.0 1E-05 2.3E-10 57.8 4.5 69 107-181 2-75 (105)
152 PF11608 Limkain-b1: Limkain b 97.9 7.4E-05 1.6E-09 50.2 6.6 67 18-94 2-75 (90)
153 KOG4210 Nuclear localization s 97.8 1.8E-05 4E-10 66.6 4.2 85 14-98 180-266 (285)
154 COG5175 MOT2 Transcriptional r 97.8 4.5E-05 9.7E-10 63.9 6.3 81 105-185 113-202 (480)
155 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00019 4E-09 44.6 5.5 52 107-165 2-53 (53)
156 PF08777 RRM_3: RNA binding mo 97.6 0.00013 2.8E-09 52.1 5.4 54 19-78 2-55 (105)
157 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00038 8.3E-09 49.0 7.4 78 105-184 5-90 (100)
158 KOG4849 mRNA cleavage factor I 97.6 6.3E-05 1.4E-09 63.3 3.2 76 105-180 79-156 (498)
159 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00026 5.6E-09 43.9 4.9 53 18-77 1-53 (53)
160 KOG1855 Predicted RNA-binding 97.5 0.0003 6.4E-09 60.8 6.7 81 90-170 215-308 (484)
161 KOG3152 TBP-binding protein, a 97.5 6.3E-05 1.4E-09 60.7 2.4 73 105-177 73-157 (278)
162 KOG2314 Translation initiation 97.5 0.0002 4.4E-09 63.8 5.7 76 105-181 57-139 (698)
163 COG5175 MOT2 Transcriptional r 97.5 0.00027 5.9E-09 59.3 6.0 78 17-94 113-201 (480)
164 KOG0129 Predicted RNA-binding 97.3 0.00075 1.6E-08 59.8 7.4 67 12-78 364-431 (520)
165 KOG4849 mRNA cleavage factor I 97.2 0.00028 6.2E-09 59.4 3.5 74 17-90 79-156 (498)
166 KOG2202 U2 snRNP splicing fact 97.2 0.00015 3.2E-09 58.8 1.5 62 121-183 83-145 (260)
167 KOG1996 mRNA splicing factor [ 97.2 0.0012 2.6E-08 54.5 6.7 64 120-183 300-364 (378)
168 KOG0115 RNA-binding protein p5 97.2 0.0013 2.8E-08 53.4 6.3 88 72-172 9-96 (275)
169 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0022 4.8E-08 45.2 6.4 77 16-93 4-89 (100)
170 KOG1855 Predicted RNA-binding 97.0 0.00094 2E-08 57.8 4.3 64 15-78 228-304 (484)
171 PF08952 DUF1866: Domain of un 97.0 0.0026 5.6E-08 47.7 6.1 56 121-185 51-106 (146)
172 PF08952 DUF1866: Domain of un 96.7 0.0073 1.6E-07 45.3 6.8 55 34-96 52-107 (146)
173 PF08675 RNA_bind: RNA binding 96.5 0.014 3.1E-07 39.3 6.5 53 17-78 8-60 (87)
174 KOG2314 Translation initiation 96.5 0.0052 1.1E-07 55.1 5.8 75 16-91 56-139 (698)
175 KOG4676 Splicing factor, argin 96.4 0.0048 1E-07 53.0 4.7 79 106-185 7-88 (479)
176 KOG0112 Large RNA-binding prot 96.3 0.001 2.2E-08 62.5 0.2 83 105-188 371-453 (975)
177 KOG3152 TBP-binding protein, a 96.3 0.0037 7.9E-08 50.8 3.2 71 17-87 73-157 (278)
178 PF10309 DUF2414: Protein of u 96.3 0.044 9.6E-07 34.9 7.4 55 106-168 5-62 (62)
179 KOG2416 Acinus (induces apopto 96.2 0.0041 9E-08 56.1 3.4 77 103-185 441-521 (718)
180 PF07576 BRAP2: BRCA1-associat 95.9 0.12 2.6E-06 37.1 8.9 68 106-175 13-81 (110)
181 PF15023 DUF4523: Protein of u 95.9 0.058 1.2E-06 40.2 7.3 75 101-183 81-159 (166)
182 KOG2193 IGF-II mRNA-binding pr 95.7 0.0097 2.1E-07 51.7 3.2 79 107-191 2-81 (584)
183 PF07292 NID: Nmi/IFP 35 domai 95.6 0.027 5.8E-07 38.6 4.6 65 63-127 1-73 (88)
184 PF07576 BRAP2: BRCA1-associat 95.5 0.2 4.2E-06 36.0 9.0 66 16-83 11-79 (110)
185 KOG2202 U2 snRNP splicing fact 95.5 0.006 1.3E-07 49.6 1.3 62 33-95 83-147 (260)
186 PF10309 DUF2414: Protein of u 95.4 0.1 2.3E-06 33.2 6.4 53 18-78 5-60 (62)
187 KOG0804 Cytoplasmic Zn-finger 95.3 0.18 3.9E-06 44.4 9.6 101 17-119 73-190 (493)
188 KOG2068 MOT2 transcription fac 95.2 0.0072 1.6E-07 51.1 0.8 81 105-185 76-162 (327)
189 PF15023 DUF4523: Protein of u 95.2 0.069 1.5E-06 39.8 5.7 73 15-94 83-160 (166)
190 PF03467 Smg4_UPF3: Smg-4/UPF3 95.1 0.02 4.3E-07 44.8 3.1 72 105-176 6-83 (176)
191 PF03467 Smg4_UPF3: Smg-4/UPF3 95.1 0.029 6.3E-07 43.9 3.9 66 16-81 5-78 (176)
192 KOG1996 mRNA splicing factor [ 94.8 0.091 2E-06 43.7 6.1 62 32-93 300-364 (378)
193 KOG0115 RNA-binding protein p5 94.8 0.031 6.7E-07 45.6 3.2 59 19-78 32-90 (275)
194 PF04847 Calcipressin: Calcipr 94.6 0.1 2.2E-06 41.1 5.8 62 119-186 8-71 (184)
195 KOG2135 Proteins containing th 94.3 0.046 1E-06 48.3 3.5 79 13-97 367-447 (526)
196 PF08675 RNA_bind: RNA binding 94.3 0.14 2.9E-06 34.7 4.9 53 108-169 11-63 (87)
197 KOG2135 Proteins containing th 93.8 0.043 9.3E-07 48.5 2.3 70 111-187 377-447 (526)
198 KOG4574 RNA-binding protein (c 93.6 0.052 1.1E-06 51.2 2.6 76 111-192 303-380 (1007)
199 KOG0804 Cytoplasmic Zn-finger 93.6 0.53 1.2E-05 41.6 8.6 69 105-175 73-142 (493)
200 PF11767 SET_assoc: Histone ly 93.5 0.39 8.4E-06 31.1 5.8 55 117-180 11-65 (66)
201 KOG4285 Mitotic phosphoprotein 93.4 0.19 4.1E-06 42.1 5.4 76 108-191 199-275 (350)
202 KOG2591 c-Mpl binding protein, 93.0 0.25 5.5E-06 44.7 5.9 71 14-91 171-247 (684)
203 KOG2068 MOT2 transcription fac 93.0 0.044 9.6E-07 46.4 1.2 110 18-127 77-201 (327)
204 PF03880 DbpA: DbpA RNA bindin 92.6 0.37 8E-06 31.9 5.1 58 117-183 12-74 (74)
205 KOG2416 Acinus (induces apopto 92.5 0.17 3.6E-06 46.1 4.1 78 10-93 436-519 (718)
206 KOG4285 Mitotic phosphoprotein 90.5 1.4 3E-05 37.1 7.3 64 17-87 196-260 (350)
207 PF14111 DUF4283: Domain of un 90.0 0.57 1.2E-05 35.3 4.4 80 61-140 56-139 (153)
208 PF04847 Calcipressin: Calcipr 89.8 1.2 2.6E-05 35.1 6.1 60 31-96 8-71 (184)
209 KOG2591 c-Mpl binding protein, 89.1 0.75 1.6E-05 41.8 5.0 71 105-182 174-248 (684)
210 PF10567 Nab6_mRNP_bdg: RNA-re 88.1 1.3 2.9E-05 37.1 5.5 159 10-169 7-212 (309)
211 KOG4483 Uncharacterized conser 87.7 2 4.2E-05 37.6 6.4 64 8-78 381-445 (528)
212 KOG2253 U1 snRNP complex, subu 87.0 0.48 1.1E-05 43.8 2.6 72 102-182 36-107 (668)
213 PF11767 SET_assoc: Histone ly 83.4 6.6 0.00014 25.4 5.9 52 29-89 11-64 (66)
214 KOG2253 U1 snRNP complex, subu 82.8 1.1 2.4E-05 41.6 2.8 75 9-92 31-107 (668)
215 KOG4410 5-formyltetrahydrofola 80.8 7.1 0.00015 32.7 6.6 47 107-159 331-378 (396)
216 PF07530 PRE_C2HC: Associated 78.2 6 0.00013 25.7 4.4 62 33-95 2-64 (68)
217 TIGR02542 B_forsyth_147 Bacter 77.3 5.5 0.00012 28.6 4.3 115 26-158 11-129 (145)
218 KOG4574 RNA-binding protein (c 77.0 1.9 4E-05 41.3 2.4 70 20-95 300-373 (1007)
219 PF07530 PRE_C2HC: Associated 75.1 9.7 0.00021 24.7 4.8 63 121-186 2-65 (68)
220 smart00596 PRE_C2HC PRE_C2HC d 73.3 8.9 0.00019 24.9 4.2 61 33-94 2-63 (69)
221 smart00596 PRE_C2HC PRE_C2HC d 72.9 9 0.0002 24.9 4.1 61 121-184 2-63 (69)
222 KOG4410 5-formyltetrahydrofola 70.6 10 0.00022 31.8 5.0 48 18-71 330-378 (396)
223 PF10567 Nab6_mRNP_bdg: RNA-re 68.6 13 0.00027 31.4 5.1 83 102-184 11-106 (309)
224 PRK14548 50S ribosomal protein 68.4 26 0.00056 23.8 5.8 57 108-167 22-80 (84)
225 KOG4483 Uncharacterized conser 66.7 11 0.00024 33.1 4.6 56 106-167 391-446 (528)
226 PF03880 DbpA: DbpA RNA bindin 66.2 30 0.00064 22.6 5.8 57 28-93 11-74 (74)
227 PRK14548 50S ribosomal protein 64.8 28 0.00061 23.6 5.5 55 21-78 23-79 (84)
228 TIGR03636 L23_arch archaeal ri 63.4 39 0.00085 22.5 5.9 57 108-167 15-73 (77)
229 PF02714 DUF221: Domain of unk 63.2 13 0.00028 31.8 4.5 56 63-128 1-56 (325)
230 KOG4019 Calcineurin-mediated s 63.1 3.5 7.6E-05 32.1 0.9 75 108-188 12-92 (193)
231 PF15513 DUF4651: Domain of un 59.4 24 0.00053 22.4 4.0 18 33-50 9-26 (62)
232 TIGR03636 L23_arch archaeal ri 58.9 43 0.00093 22.3 5.4 54 21-77 16-71 (77)
233 PF07292 NID: Nmi/IFP 35 domai 53.6 8.1 0.00018 26.5 1.3 26 15-40 49-74 (88)
234 KOG2318 Uncharacterized conser 48.3 1E+02 0.0022 28.8 7.6 79 104-182 172-304 (650)
235 PF03468 XS: XS domain; Inter 46.4 37 0.0008 24.6 3.9 36 119-157 30-65 (116)
236 COG5353 Uncharacterized protei 45.8 1.2E+02 0.0025 23.1 6.4 56 18-73 87-155 (161)
237 PF11411 DNA_ligase_IV: DNA li 45.6 16 0.00034 20.5 1.4 17 28-44 19-35 (36)
238 KOG4008 rRNA processing protei 43.1 22 0.00048 29.1 2.5 35 13-47 35-69 (261)
239 KOG4213 RNA-binding protein La 43.0 30 0.00065 27.1 3.1 55 18-78 111-168 (205)
240 PF02714 DUF221: Domain of unk 40.7 29 0.00063 29.6 3.1 33 151-185 1-33 (325)
241 COG5193 LHP1 La protein, small 37.8 16 0.00034 32.3 1.0 61 18-78 174-244 (438)
242 PF03439 Spt5-NGN: Early trans 37.7 63 0.0014 21.7 3.8 26 147-172 43-68 (84)
243 KOG4008 rRNA processing protei 35.6 35 0.00077 27.9 2.6 35 102-136 36-70 (261)
244 KOG1295 Nonsense-mediated deca 33.2 52 0.0011 28.9 3.4 63 16-78 5-70 (376)
245 PRK11901 hypothetical protein; 32.3 1.3E+02 0.0027 26.1 5.4 53 116-170 252-306 (327)
246 COG5193 LHP1 La protein, small 31.9 22 0.00047 31.4 0.9 62 105-166 173-244 (438)
247 PHA01632 hypothetical protein 31.7 44 0.00095 20.6 1.9 21 21-41 19-39 (64)
248 PF00276 Ribosomal_L23: Riboso 31.2 38 0.00082 23.3 1.9 51 22-72 23-85 (91)
249 KOG2891 Surface glycoprotein [ 30.9 50 0.0011 27.7 2.8 36 16-51 147-194 (445)
250 KOG2295 C2H2 Zn-finger protein 30.9 6.6 0.00014 35.9 -2.4 72 106-177 231-302 (648)
251 KOG2891 Surface glycoprotein [ 30.2 55 0.0012 27.5 2.9 78 62-139 77-194 (445)
252 KOG1295 Nonsense-mediated deca 29.3 52 0.0011 28.9 2.7 70 106-175 7-79 (376)
253 PF04026 SpoVG: SpoVG; InterP 27.9 1.5E+02 0.0033 20.0 4.3 26 132-157 2-27 (84)
254 KOG4365 Uncharacterized conser 26.3 13 0.00029 33.1 -1.3 75 19-94 4-80 (572)
255 PTZ00191 60S ribosomal protein 25.7 3E+02 0.0064 20.8 5.9 55 108-165 83-139 (145)
256 PRK08559 nusG transcription an 25.1 2.1E+02 0.0045 21.7 5.2 43 32-79 18-65 (153)
257 PF11823 DUF3343: Protein of u 24.6 76 0.0016 20.5 2.4 27 150-176 3-29 (73)
258 PRK13259 regulatory protein Sp 24.4 1.7E+02 0.0038 20.3 4.1 26 132-157 2-27 (94)
259 KOG4213 RNA-binding protein La 24.3 1.1E+02 0.0024 24.1 3.4 58 105-167 110-169 (205)
260 COG5470 Uncharacterized conser 24.2 1.6E+02 0.0034 20.6 3.8 44 35-78 25-71 (96)
261 KOG2318 Uncharacterized conser 24.1 3.6E+02 0.0079 25.4 7.1 72 15-86 171-296 (650)
262 COG5146 PanK Pantothenate kina 23.9 25 0.00053 29.1 -0.1 14 233-246 73-86 (342)
263 PF08734 GYD: GYD domain; Int 23.2 2.5E+02 0.0054 19.1 5.6 43 32-78 22-65 (91)
264 PRK05738 rplW 50S ribosomal pr 22.8 2.6E+02 0.0055 19.2 4.8 34 21-54 22-57 (92)
265 KOG4365 Uncharacterized conser 21.9 15 0.00032 32.8 -1.9 76 107-183 4-79 (572)
266 PF14893 PNMA: PNMA 21.9 69 0.0015 27.8 2.2 53 14-70 14-72 (331)
267 PF10281 Ish1: Putative stress 21.3 1E+02 0.0023 17.1 2.2 17 117-133 3-19 (38)
268 KOG1687 NADH-ubiquinone oxidor 20.3 1.7E+02 0.0036 21.9 3.5 36 198-246 82-117 (168)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=5.1e-36 Score=256.93 Aligned_cols=173 Identities=24% Similarity=0.459 Sum_probs=158.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEE
Q 025858 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEI 90 (247)
Q Consensus 13 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v 90 (247)
.+....++|||+|||.++||++|+++|+.||+|++++|++|+.+++++|||||+|.++++|++|++ ++..+.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 455678899999999999999999999999999999999999899999999999999999999997 788999999999
Q ss_pred eeecCCCCCCCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCC
Q 025858 91 KRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNM 170 (247)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~ 170 (247)
.++.+... ....++|||+|||..+|+++|+++|++||.|+.+++++++.+++++|+|||+|.+.++|++||+.||+
T Consensus 182 ~~a~p~~~----~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng 257 (346)
T TIGR01659 182 SYARPGGE----SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNN 257 (346)
T ss_pred eccccccc----ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 99876432 23467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCC--cEEEEeecccCccc
Q 025858 171 IDMAG--TQVSLIGWSPVNQL 189 (247)
Q Consensus 171 ~~~~g--~~l~v~~a~~~~~~ 189 (247)
..+.| +.|+|+++..+...
T Consensus 258 ~~~~g~~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 258 VIPEGGSQPLTVRLAEEHGKA 278 (346)
T ss_pred CccCCCceeEEEEECCccccc
Confidence 99876 68999998875443
No 2
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-34 Score=227.64 Aligned_cols=175 Identities=19% Similarity=0.453 Sum_probs=158.6
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEE
Q 025858 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQV 88 (247)
Q Consensus 11 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i 88 (247)
+..+...+..|||+.|.+.++-++|++.|..||+|.+.++++|..|+++|||+||.|.+.++|+.|+. +++.|++|.|
T Consensus 55 sk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~I 134 (321)
T KOG0148|consen 55 SKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTI 134 (321)
T ss_pred CCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeecccee
Confidence 34444557789999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred EEeeecCCCCCC------------CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEc
Q 025858 89 EIKRTIPKGSGQ------------SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFD 156 (247)
Q Consensus 89 ~v~~~~~~~~~~------------~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 156 (247)
+..|+..++... ....++++|||+|++..+||++|++.|++||.|.+|++.++ +||+||.|+
T Consensus 135 RTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~ 208 (321)
T KOG0148|consen 135 RTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFE 208 (321)
T ss_pred eccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEec
Confidence 999998765421 23456889999999999999999999999999999999998 679999999
Q ss_pred CHHHHHHHHHcCCCcccCCcEEEEeecccCccccc
Q 025858 157 SEEVVDEMLSKGNMIDMAGTQVSLIGWSPVNQLLK 191 (247)
Q Consensus 157 ~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~~~~~~ 191 (247)
+.|+|.+||..+|+.++.|..+++.|.+.......
T Consensus 209 tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~~~ 243 (321)
T KOG0148|consen 209 TKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDGIN 243 (321)
T ss_pred chhhHHHHHHHhcCceeCceEEEEeccccCCCCCC
Confidence 99999999999999999999999999987555443
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=7.1e-34 Score=255.97 Aligned_cols=173 Identities=20% Similarity=0.458 Sum_probs=156.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeee
Q 025858 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRT 93 (247)
Q Consensus 16 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~ 93 (247)
...++|||+|||++++|++|+++|+.||.|.++++++|+.+++++|||||+|.+.++|.+|++ ++..++|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 456899999999999999999999999999999999999999999999999999999999998 888999999999875
Q ss_pred cCCCCCC-------CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHH
Q 025858 94 IPKGSGQ-------SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166 (247)
Q Consensus 94 ~~~~~~~-------~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~ 166 (247)
....... ......++|||+|||+++++++|+++|+.||.|.++++.+++.+++++|||||+|.+.++|.+|+.
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~ 264 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 264 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHH
Confidence 4332211 112245789999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccCCcEEEEeecccCcc
Q 025858 167 KGNMIDMAGTQVSLIGWSPVNQ 188 (247)
Q Consensus 167 ~l~~~~~~g~~l~v~~a~~~~~ 188 (247)
.||+..++|+.|+|.++.+.+.
T Consensus 265 amNg~elgGr~LrV~kAi~pP~ 286 (612)
T TIGR01645 265 SMNLFDLGGQYLRVGKCVTPPD 286 (612)
T ss_pred HhCCCeeCCeEEEEEecCCCcc
Confidence 9999999999999999886443
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=9e-33 Score=239.99 Aligned_cols=167 Identities=24% Similarity=0.515 Sum_probs=153.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeeec
Q 025858 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTI 94 (247)
Q Consensus 17 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~~ 94 (247)
+..+|||+|||.++||++|+++|+.||+|.++++++++.+|+++|||||+|.+.++|.+|++ ++..+.|+.|+|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46899999999999999999999999999999999999899999999999999999999998 7889999999999987
Q ss_pred CCCCCCCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccC
Q 025858 95 PKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMA 174 (247)
Q Consensus 95 ~~~~~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~ 174 (247)
+... ....++|||+|||..+++++|+++|++||.|..++++.+..++.++|||||+|.+.++|.+|++.|||..+.
T Consensus 82 ~~~~----~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~ 157 (352)
T TIGR01661 82 PSSD----SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPS 157 (352)
T ss_pred cccc----ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccC
Confidence 6432 234678999999999999999999999999999999999888999999999999999999999999999988
Q ss_pred C--cEEEEeecccCc
Q 025858 175 G--TQVSLIGWSPVN 187 (247)
Q Consensus 175 g--~~l~v~~a~~~~ 187 (247)
| .+|.|.++....
T Consensus 158 g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 158 GCTEPITVKFANNPS 172 (352)
T ss_pred CCceeEEEEECCCCC
Confidence 7 568888876544
No 5
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=3.2e-32 Score=244.29 Aligned_cols=174 Identities=24% Similarity=0.418 Sum_probs=156.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEE
Q 025858 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEI 90 (247)
Q Consensus 12 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v 90 (247)
.......++|||+|||.++|+++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+|+. ++..+.|++|.|
T Consensus 83 ~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v 162 (457)
T TIGR01622 83 TEAERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIV 162 (457)
T ss_pred CccccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEE
Confidence 3445568899999999999999999999999999999999999999999999999999999999999 889999999999
Q ss_pred eeecCCCCCC--------CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHH
Q 025858 91 KRTIPKGSGQ--------SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVD 162 (247)
Q Consensus 91 ~~~~~~~~~~--------~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 162 (247)
..+....... ......++|||+|||..+++++|+++|++||.|..|.++.+..+|.++|||||+|.+.++|.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 163 QSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred eecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 8765432211 11123579999999999999999999999999999999999998999999999999999999
Q ss_pred HHHHcCCCcccCCcEEEEeeccc
Q 025858 163 EMLSKGNMIDMAGTQVSLIGWSP 185 (247)
Q Consensus 163 ~ai~~l~~~~~~g~~l~v~~a~~ 185 (247)
+|+..|||..+.|+.|+|.++..
T Consensus 243 ~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 243 EALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHHhcCCcEECCEEEEEEEccC
Confidence 99999999999999999999763
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=9e-32 Score=233.70 Aligned_cols=173 Identities=24% Similarity=0.391 Sum_probs=150.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCC--eEEEEe
Q 025858 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIING--KQVEIK 91 (247)
Q Consensus 16 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g--~~i~v~ 91 (247)
...++|||+|||.++++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+|++ ++..+.| .+|.+.
T Consensus 87 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~ 166 (352)
T TIGR01661 87 IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVK 166 (352)
T ss_pred cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 356789999999999999999999999999999999998889999999999999999999998 6777766 567777
Q ss_pred eecCCCCCC-----------------------------------------------------------------------
Q 025858 92 RTIPKGSGQ----------------------------------------------------------------------- 100 (247)
Q Consensus 92 ~~~~~~~~~----------------------------------------------------------------------- 100 (247)
++.......
T Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (352)
T TIGR01661 167 FANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASP 246 (352)
T ss_pred ECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCC
Confidence 764332000
Q ss_pred -----------------CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHH
Q 025858 101 -----------------SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE 163 (247)
Q Consensus 101 -----------------~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ 163 (247)
.......+|||+|||.++++++|+++|++||.|+++++++|+.|+.++|||||+|.+.++|.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~ 326 (352)
T TIGR01661 247 PATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAM 326 (352)
T ss_pred ccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHH
Confidence 000112259999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCcccCCcEEEEeecccCcc
Q 025858 164 MLSKGNMIDMAGTQVSLIGWSPVNQ 188 (247)
Q Consensus 164 ai~~l~~~~~~g~~l~v~~a~~~~~ 188 (247)
|+..|||..+.|+.|+|.|+..+..
T Consensus 327 Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 327 AILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHHhCCCEECCeEEEEEEccCCCC
Confidence 9999999999999999999987653
No 7
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.3e-32 Score=229.47 Aligned_cols=174 Identities=25% Similarity=0.463 Sum_probs=151.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh---ccCccCC--eEE
Q 025858 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE---DTHIING--KQV 88 (247)
Q Consensus 14 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~---~~~~l~g--~~i 88 (247)
.+.+.-.+||+.+|+.++|+||+++|++||.|.+|.+++|+.|+.++|||||.|.+.++|.+|+. +...|-| ++|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 33566689999999999999999999999999999999999999999999999999999999887 5556655 567
Q ss_pred EEeeecCCCCCCCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcC
Q 025858 89 EIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168 (247)
Q Consensus 89 ~v~~~~~~~~~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l 168 (247)
.|+++...... -...++|||+.|++.+||.+++++|++||.|++|.|++|.. +.+||||||+|++++-|..||+.|
T Consensus 110 qvk~Ad~E~er---~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ 185 (510)
T KOG0144|consen 110 QVKYADGERER---IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKAL 185 (510)
T ss_pred eecccchhhhc---cccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhh
Confidence 88877543322 24578999999999999999999999999999999999954 899999999999999999999999
Q ss_pred CCcc-cCC--cEEEEeecccCccccc
Q 025858 169 NMID-MAG--TQVSLIGWSPVNQLLK 191 (247)
Q Consensus 169 ~~~~-~~g--~~l~v~~a~~~~~~~~ 191 (247)
||.. +.| .+|.|+||+++..+..
T Consensus 186 ng~~tmeGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 186 NGTQTMEGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred ccceeeccCCCceEEEecccCCCchH
Confidence 9975 444 5799999998766543
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=1.5e-30 Score=238.85 Aligned_cols=165 Identities=25% Similarity=0.474 Sum_probs=149.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeeecCCC
Q 025858 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIPKG 97 (247)
Q Consensus 20 ~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~~~~~ 97 (247)
+|||+|||.++||++|+++|++||.|.+|++.+|..+++++|||||+|.+.++|++|++ +...++|+.|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 69999999999999999999999999999999999999999999999999999999998 6678999999999986443
Q ss_pred CCCCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcE
Q 025858 98 SGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQ 177 (247)
Q Consensus 98 ~~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~ 177 (247)
.. ......+|||+|||.++++++|+++|++||.|.+|++..+. +|+++|||||+|.+.++|.+|+..|||..+.|+.
T Consensus 82 ~~--~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~ 158 (562)
T TIGR01628 82 SL--RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKE 158 (562)
T ss_pred cc--cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecCce
Confidence 32 22235689999999999999999999999999999999884 6889999999999999999999999999999999
Q ss_pred EEEeecccCc
Q 025858 178 VSLIGWSPVN 187 (247)
Q Consensus 178 l~v~~a~~~~ 187 (247)
|.|.....+.
T Consensus 159 i~v~~~~~~~ 168 (562)
T TIGR01628 159 VYVGRFIKKH 168 (562)
T ss_pred EEEecccccc
Confidence 9997665443
No 9
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=4.7e-30 Score=203.24 Aligned_cols=168 Identities=26% Similarity=0.526 Sum_probs=155.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEee
Q 025858 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKR 92 (247)
Q Consensus 15 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~ 92 (247)
++..+.|.|.-||.++|+++++.+|...|+|+++++++|+.+|.+.||+||.|-+++||++|+. ++-.+..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 4566789999999999999999999999999999999999999999999999999999999999 88899999999999
Q ss_pred ecCCCCCCCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcc
Q 025858 93 TIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMID 172 (247)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~ 172 (247)
+.|... ......|||.+||+.+|..+|+++|++||.|..-+|+.|..||.++|.+||.|+-+++|+.||..|||..
T Consensus 118 ARPSs~----~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~ 193 (360)
T KOG0145|consen 118 ARPSSD----SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK 193 (360)
T ss_pred ccCChh----hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCC
Confidence 987643 4556789999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCc--EEEEeecccC
Q 025858 173 MAGT--QVSLIGWSPV 186 (247)
Q Consensus 173 ~~g~--~l~v~~a~~~ 186 (247)
-.|. +|.|+++...
T Consensus 194 P~g~tepItVKFannP 209 (360)
T KOG0145|consen 194 PSGCTEPITVKFANNP 209 (360)
T ss_pred CCCCCCCeEEEecCCc
Confidence 6664 6999998754
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=1.3e-29 Score=232.69 Aligned_cols=174 Identities=22% Similarity=0.443 Sum_probs=155.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccC----CeE
Q 025858 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIIN----GKQ 87 (247)
Q Consensus 14 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~----g~~ 87 (247)
.....++|||+|||.++|+++|+++|+.||.|.++.++.+. ++.++|||||+|.+.++|.+|++ ++..+. |+.
T Consensus 174 ~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~ 252 (562)
T TIGR01628 174 PLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKK 252 (562)
T ss_pred cccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEeccccccee
Confidence 34556789999999999999999999999999999999987 78999999999999999999998 778888 999
Q ss_pred EEEeeecCCCCCC--------------CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEE
Q 025858 88 VEIKRTIPKGSGQ--------------SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFV 153 (247)
Q Consensus 88 i~v~~~~~~~~~~--------------~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV 153 (247)
+.|.++....... .......+|||+||+..+++++|+++|++||.|.+++++.+ .+|.++|+|||
T Consensus 253 l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV 331 (562)
T TIGR01628 253 LYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFV 331 (562)
T ss_pred eEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEE
Confidence 9998876543320 11334568999999999999999999999999999999999 67999999999
Q ss_pred EEcCHHHHHHHHHcCCCcccCCcEEEEeecccCccc
Q 025858 154 IFDSEEVVDEMLSKGNMIDMAGTQVSLIGWSPVNQL 189 (247)
Q Consensus 154 ~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~~~~ 189 (247)
+|.+.++|.+|+..|||..+.|+.|.|.+|..+...
T Consensus 332 ~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~ 367 (562)
T TIGR01628 332 CFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQR 367 (562)
T ss_pred EeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHH
Confidence 999999999999999999999999999999876543
No 11
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=5.7e-29 Score=223.96 Aligned_cols=165 Identities=23% Similarity=0.434 Sum_probs=135.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccC-CeEEEEe
Q 025858 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIIN-GKQVEIK 91 (247)
Q Consensus 15 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~-g~~i~v~ 91 (247)
+...++|||+|||.+++|++|+++|++||.|.+++|++| .++.++|||||+|.+.++|++|++ ++..+. |+.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 345689999999999999999999999999999999999 589999999999999999999998 444442 4433322
Q ss_pred ee------------------------------------------------------------------------------
Q 025858 92 RT------------------------------------------------------------------------------ 93 (247)
Q Consensus 92 ~~------------------------------------------------------------------------------ 93 (247)
++
T Consensus 134 ~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~ 213 (578)
T TIGR01648 134 ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHV 213 (578)
T ss_pred ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCce
Confidence 11
Q ss_pred ------cCCCCCCC-CCCccccEEEcCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHH
Q 025858 94 ------IPKGSGQS-KDFKTKKIFVGGIPSSVSEDELKNFFSKY--GKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEM 164 (247)
Q Consensus 94 ------~~~~~~~~-~~~~~~~l~v~~l~~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a 164 (247)
.+...... .....++|||+||+.++++++|+++|++| |.|++|++++ +||||+|.+.++|.+|
T Consensus 214 I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kA 285 (578)
T TIGR01648 214 IAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKA 285 (578)
T ss_pred EEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHH
Confidence 11100000 01124579999999999999999999999 9999998754 4999999999999999
Q ss_pred HHcCCCcccCCcEEEEeecccCcc
Q 025858 165 LSKGNMIDMAGTQVSLIGWSPVNQ 188 (247)
Q Consensus 165 i~~l~~~~~~g~~l~v~~a~~~~~ 188 (247)
++.||+..|.|+.|+|.|+.+...
T Consensus 286 i~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 286 MDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred HHHhCCCEECCEEEEEEEccCCCc
Confidence 999999999999999999987544
No 12
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=4.5e-29 Score=210.64 Aligned_cols=168 Identities=24% Similarity=0.432 Sum_probs=144.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCcc-CCeEEEEee
Q 025858 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHII-NGKQVEIKR 92 (247)
Q Consensus 16 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l-~g~~i~v~~ 92 (247)
..-+.|||+.||.++.|++|..+|++.|+|-++++++|+.+|.+||||||.|.+.++|+.|++ +.++| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 456789999999999999999999999999999999999999999999999999999999999 55544 577787766
Q ss_pred ecCCCCC-------------------------------------------------------------------------
Q 025858 93 TIPKGSG------------------------------------------------------------------------- 99 (247)
Q Consensus 93 ~~~~~~~------------------------------------------------------------------------- 99 (247)
+......
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~ 240 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAI 240 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcc
Confidence 5332100
Q ss_pred ------C------CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHc
Q 025858 100 ------Q------SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167 (247)
Q Consensus 100 ------~------~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~ 167 (247)
. ........|||+||+.++|++.|+++|++||.|++|+.++| ||||.|.++++|-+|++.
T Consensus 241 tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~ 312 (506)
T KOG0117|consen 241 TVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKE 312 (506)
T ss_pred eeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHH
Confidence 0 00012236999999999999999999999999999999877 999999999999999999
Q ss_pred CCCcccCCcEEEEeecccCccccc
Q 025858 168 GNMIDMAGTQVSLIGWSPVNQLLK 191 (247)
Q Consensus 168 l~~~~~~g~~l~v~~a~~~~~~~~ 191 (247)
+||++|.|..|.|..|+|......
T Consensus 313 ~ngkeldG~~iEvtLAKP~~k~k~ 336 (506)
T KOG0117|consen 313 TNGKELDGSPIEVTLAKPVDKKKK 336 (506)
T ss_pred hcCceecCceEEEEecCChhhhcc
Confidence 999999999999999998665543
No 13
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.96 E-value=2.7e-29 Score=189.21 Aligned_cols=173 Identities=21% Similarity=0.368 Sum_probs=157.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeee
Q 025858 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRT 93 (247)
Q Consensus 16 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~ 93 (247)
.+..||||+||+..++++.|.++|-+.|+|.++++.+|+.+...+||||++|.++|+|+.|++ ++..|.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 467899999999999999999999999999999999999999999999999999999999999 888999999999988
Q ss_pred cCCCCCCCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEE-EEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcc
Q 025858 94 IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLE-HQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMID 172 (247)
Q Consensus 94 ~~~~~~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~ 172 (247)
.. .......+.+|||+||.++++|..|.+.|+.||.+.. -++++++.||.++|+|||.|.+.+.+.+|+..|||..
T Consensus 87 s~---~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~ 163 (203)
T KOG0131|consen 87 SA---HQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQY 163 (203)
T ss_pred cc---ccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccch
Confidence 72 2233334579999999999999999999999998765 4899999999999999999999999999999999999
Q ss_pred cCCcEEEEeecccCccccc
Q 025858 173 MAGTQVSLIGWSPVNQLLK 191 (247)
Q Consensus 173 ~~g~~l~v~~a~~~~~~~~ 191 (247)
++++++.|.++..+...-.
T Consensus 164 l~nr~itv~ya~k~~~kg~ 182 (203)
T KOG0131|consen 164 LCNRPITVSYAFKKDTKGE 182 (203)
T ss_pred hcCCceEEEEEEecCCCcc
Confidence 9999999999877655543
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=5.8e-28 Score=219.50 Aligned_cols=169 Identities=17% Similarity=0.335 Sum_probs=142.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccC------------CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-
Q 025858 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKY------------GDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE- 78 (247)
Q Consensus 12 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~------------G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~- 78 (247)
.......++|||+|||+++|+++|+++|..+ +.|..+.+ +..+|||||+|.+.++|..|+.
T Consensus 169 ~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~l 242 (509)
T TIGR01642 169 QQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMAL 242 (509)
T ss_pred ccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhcC
Confidence 3455678899999999999999999999975 23333333 4567999999999999999998
Q ss_pred ccCccCCeEEEEeeecCCCCC-------------------------CCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCe
Q 025858 79 DTHIINGKQVEIKRTIPKGSG-------------------------QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKV 133 (247)
Q Consensus 79 ~~~~l~g~~i~v~~~~~~~~~-------------------------~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i 133 (247)
++..+.|+.|.|......... .......++|||+|||..+++++|+++|++||.|
T Consensus 243 ~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i 322 (509)
T TIGR01642 243 DSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDL 322 (509)
T ss_pred CCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 888999999999754322100 0011234689999999999999999999999999
Q ss_pred EEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeecccC
Q 025858 134 LEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWSPV 186 (247)
Q Consensus 134 ~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~ 186 (247)
..+.++.+..+|.++|||||+|.+.++|..|+..|||..+.|+.|.|.++...
T Consensus 323 ~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 323 KAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred eEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 99999999999999999999999999999999999999999999999998653
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=7.2e-28 Score=216.77 Aligned_cols=160 Identities=15% Similarity=0.211 Sum_probs=137.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh----ccCccCCeEEEEee
Q 025858 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE----DTHIINGKQVEIKR 92 (247)
Q Consensus 17 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~----~~~~l~g~~i~v~~ 92 (247)
++++|||+|||.++||++|+++|+.||.|.++.++++ +++|||+|.+.++|.+|++ ++..++|+.|+|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 5789999999999999999999999999999999864 4799999999999999997 45689999999999
Q ss_pred ecCCCCCCCC--------CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHH
Q 025858 93 TIPKGSGQSK--------DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEM 164 (247)
Q Consensus 93 ~~~~~~~~~~--------~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a 164 (247)
+......... .....+|+|.||+..+|+++|+++|++||.|.+|.++++.. +++|||+|.+.++|.+|
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A 150 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHA 150 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHH
Confidence 8654321111 11234799999999999999999999999999999987643 46899999999999999
Q ss_pred HHcCCCcccCCc--EEEEeecccC
Q 025858 165 LSKGNMIDMAGT--QVSLIGWSPV 186 (247)
Q Consensus 165 i~~l~~~~~~g~--~l~v~~a~~~ 186 (247)
++.|||..+.|. .|+|.|+++.
T Consensus 151 ~~~Lng~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 151 KAALNGADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred HHHhcCCcccCCceEEEEEEecCC
Confidence 999999999764 7899888763
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.95 E-value=4.6e-27 Score=211.54 Aligned_cols=165 Identities=19% Similarity=0.306 Sum_probs=140.7
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEe
Q 025858 15 GASPGKIFIGGLPK-DTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIK 91 (247)
Q Consensus 15 ~~~~~~l~v~nLp~-~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~ 91 (247)
..++++|||+|||. .+|+++|+++|+.||.|.+|++++++ +|+|||+|.+.++|..|++ ++..|.|+.|+|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 34678999999998 69999999999999999999999864 6899999999999999998 7889999999999
Q ss_pred eecCCCCCCC---------------------------------CCCccccEEEcCCCCCCCHHHHHHHHHhcCC--eEEE
Q 025858 92 RTIPKGSGQS---------------------------------KDFKTKKIFVGGIPSSVSEDELKNFFSKYGK--VLEH 136 (247)
Q Consensus 92 ~~~~~~~~~~---------------------------------~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~--i~~v 136 (247)
++........ ...++.+|||+|||.++++++|+++|++||. +..+
T Consensus 347 ~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~i 426 (481)
T TIGR01649 347 PSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKF 426 (481)
T ss_pred EcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEE
Confidence 8754311000 0123568999999999999999999999998 8888
Q ss_pred EEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcE------EEEeecccC
Q 025858 137 QIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQ------VSLIGWSPV 186 (247)
Q Consensus 137 ~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~------l~v~~a~~~ 186 (247)
++.... +..+++|||+|.+.++|.+|+..||+..+.|+. |+|.+++++
T Consensus 427 k~~~~~--~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 427 KFFPKD--NERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred EEecCC--CCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 886543 236789999999999999999999999999985 999988764
No 17
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=6.6e-27 Score=212.57 Aligned_cols=170 Identities=21% Similarity=0.323 Sum_probs=144.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeee
Q 025858 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRT 93 (247)
Q Consensus 16 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~ 93 (247)
...++|||+|||..+|+++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|..|+. ++..++|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999999999899999999999999999999998 888999999999987
Q ss_pred cCCCCCC------------------------CCCCccccEEEcCCCCCC----------CHHHHHHHHHhcCCeEEEEEE
Q 025858 94 IPKGSGQ------------------------SKDFKTKKIFVGGIPSSV----------SEDELKNFFSKYGKVLEHQII 139 (247)
Q Consensus 94 ~~~~~~~------------------------~~~~~~~~l~v~~l~~~~----------t~~~l~~~f~~~G~i~~v~i~ 139 (247)
....... ....+..+|+|.||.... ..++|+++|++||.|+.|.|+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 5322110 011245678999986321 236899999999999999998
Q ss_pred ecC---CCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeeccc
Q 025858 140 RDH---ETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWSP 185 (247)
Q Consensus 140 ~~~---~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 185 (247)
++. .++...|+|||+|.+.++|.+|+..|||..|.|+.|.|.+...
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 763 3345679999999999999999999999999999999988654
No 18
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1.1e-26 Score=184.10 Aligned_cols=174 Identities=24% Similarity=0.386 Sum_probs=152.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCC--eEE
Q 025858 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIING--KQV 88 (247)
Q Consensus 13 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g--~~i 88 (247)
++......|||.+||..+|..+|+.+|++||.|..-+++.|..+|.++|.+||.|...++|+.|++ +++.-.| .+|
T Consensus 122 s~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepI 201 (360)
T KOG0145|consen 122 SDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPI 201 (360)
T ss_pred hhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCe
Confidence 444566789999999999999999999999999999999999999999999999999999999998 6665544 468
Q ss_pred EEeeecCCCCC-----------------------------------------------------------CCCCCccccE
Q 025858 89 EIKRTIPKGSG-----------------------------------------------------------QSKDFKTKKI 109 (247)
Q Consensus 89 ~v~~~~~~~~~-----------------------------------------------------------~~~~~~~~~l 109 (247)
.|+++...... ........+|
T Consensus 202 tVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ci 281 (360)
T KOG0145|consen 202 TVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCI 281 (360)
T ss_pred EEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEE
Confidence 88887543221 0111124489
Q ss_pred EEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeecccC
Q 025858 110 FVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWSPV 186 (247)
Q Consensus 110 ~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~ 186 (247)
||.||.++.+|.-|.++|.+||.|..|++++|-.|++.|||+||...+.++|..||..|||..+.++.|.|.+...+
T Consensus 282 FvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 282 FVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred EEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997654
No 19
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1.4e-26 Score=199.76 Aligned_cols=172 Identities=23% Similarity=0.426 Sum_probs=153.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeeecCC
Q 025858 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIPK 96 (247)
Q Consensus 19 ~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~~~~ 96 (247)
.||||++||++++.++|.++|+.+|+|..+.++.++.++.++||+||.|.-.+|+++|+. ++..++|+.|+|..+.+.
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 799999999999999999999999999999999999889999999999999999999998 667899999999988665
Q ss_pred CCCCC--------------------C--CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEE
Q 025858 97 GSGQS--------------------K--DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVI 154 (247)
Q Consensus 97 ~~~~~--------------------~--~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~ 154 (247)
..... . +.+..+|.|+|||+.+.+.+|+.+|+.||.|.+|.|++... |+-.|||||+
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~ 164 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQ 164 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEE
Confidence 43210 0 12356899999999999999999999999999999997655 5555999999
Q ss_pred EcCHHHHHHHHHcCCCcccCCcEEEEeecccCccccc
Q 025858 155 FDSEEVVDEMLSKGNMIDMAGTQVSLIGWSPVNQLLK 191 (247)
Q Consensus 155 f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~~~~~~ 191 (247)
|....+|..|+..+|+..|.|++|-|.||.++..+..
T Consensus 165 fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ 201 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYED 201 (678)
T ss_pred EeeHHHHHHHHHhccCceecCceeEEeeecccccccc
Confidence 9999999999999999999999999999998777654
No 20
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=2.3e-26 Score=190.09 Aligned_cols=169 Identities=20% Similarity=0.471 Sum_probs=152.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeeecCC
Q 025858 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIPK 96 (247)
Q Consensus 19 ~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~~~~ 96 (247)
++|||+.+.+...|+.||..|..||+|.+|.+.+|+.|++.||||||+|+-+|.|..|++ |+..++||.|+|.....-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 689999999999999999999999999999999999999999999999999999999999 888999999999865443
Q ss_pred CCCC-------CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCC
Q 025858 97 GSGQ-------SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN 169 (247)
Q Consensus 97 ~~~~-------~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~ 169 (247)
+..+ .+...-.+|||..+.++.+|+||+.+|+-||+|..|.+-++..++.++||+|++|.+..+...|+..||
T Consensus 194 pQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMN 273 (544)
T KOG0124|consen 194 PQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN 273 (544)
T ss_pred cccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcc
Confidence 3321 122345689999999999999999999999999999999999889999999999999999999999999
Q ss_pred CcccCCcEEEEeecccCc
Q 025858 170 MIDMAGTQVSLIGWSPVN 187 (247)
Q Consensus 170 ~~~~~g~~l~v~~a~~~~ 187 (247)
-+.+.|.-|+|-.+...+
T Consensus 274 lFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 274 LFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred hhhcccceEecccccCCC
Confidence 999999999997665433
No 21
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=2.3e-25 Score=192.33 Aligned_cols=170 Identities=22% Similarity=0.426 Sum_probs=147.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeeecC
Q 025858 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIP 95 (247)
Q Consensus 18 ~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~~~ 95 (247)
.-+|.|+|||..+.+.+|+.+|+.||.|.+|.|.+.+.++.+ |||||.|.+..+|..|++ +++.|+||+|-|.|+-+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 668999999999999999999999999999999988755555 999999999999999999 89999999999999854
Q ss_pred CCCC-----------------------------------------CC---------------------------------
Q 025858 96 KGSG-----------------------------------------QS--------------------------------- 101 (247)
Q Consensus 96 ~~~~-----------------------------------------~~--------------------------------- 101 (247)
+..- ..
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 3210 00
Q ss_pred ------------CCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcC-
Q 025858 102 ------------KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG- 168 (247)
Q Consensus 102 ------------~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l- 168 (247)
......+|||+|||.++|+++|.+.|++||.|....++.++.|+.++|.|||.|.+..+|..||...
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 0001247999999999999999999999999999999999999999999999999999999999874
Q ss_pred ----CC-cccCCcEEEEeecccCcc
Q 025858 169 ----NM-IDMAGTQVSLIGWSPVNQ 188 (247)
Q Consensus 169 ----~~-~~~~g~~l~v~~a~~~~~ 188 (247)
.| ..+.|+.|+|..|.++..
T Consensus 356 pa~e~g~~ll~GR~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 356 PASEDGSVLLDGRLLKVTLAVTRKE 380 (678)
T ss_pred ccCCCceEEEeccEEeeeeccchHH
Confidence 23 679999999988766443
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=2.1e-24 Score=193.71 Aligned_cols=165 Identities=21% Similarity=0.321 Sum_probs=140.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeeec
Q 025858 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTI 94 (247)
Q Consensus 17 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~~ 94 (247)
..++|||+|||.++|+++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|++ ++..+.|+.|.|.++.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 47899999999999999999999999999999999999889999999999999999999998 7889999999999943
Q ss_pred CCCCC---------------------------------------------------------------------------
Q 025858 95 PKGSG--------------------------------------------------------------------------- 99 (247)
Q Consensus 95 ~~~~~--------------------------------------------------------------------------- 99 (247)
.....
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (457)
T TIGR01622 265 DSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGAL 344 (457)
T ss_pred CCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccccccccccccccccccc
Confidence 21000
Q ss_pred -----------CCCCCccccEEEcCCCCCCC----------HHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCH
Q 025858 100 -----------QSKDFKTKKIFVGGIPSSVS----------EDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSE 158 (247)
Q Consensus 100 -----------~~~~~~~~~l~v~~l~~~~t----------~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 158 (247)
.......++|+|.||....+ .+||++.|++||.|+.+.+... ...|++||+|.+.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~----~~~G~~fV~F~~~ 420 (457)
T TIGR01622 345 AIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTK----NSAGKIYLKFSSV 420 (457)
T ss_pred ccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCC----CCceeEEEEECCH
Confidence 00113446788888855444 3689999999999999998643 3678999999999
Q ss_pred HHHHHHHHcCCCcccCCcEEEEeeccc
Q 025858 159 EVVDEMLSKGNMIDMAGTQVSLIGWSP 185 (247)
Q Consensus 159 ~~a~~ai~~l~~~~~~g~~l~v~~a~~ 185 (247)
++|.+|++.|||..+.|+.|.+.+...
T Consensus 421 e~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 421 DAALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred HHHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 999999999999999999999988654
No 23
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.93 E-value=1.3e-25 Score=180.52 Aligned_cols=148 Identities=27% Similarity=0.542 Sum_probs=135.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHhccC--ccCCeEEEEeeecCC
Q 025858 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPK 96 (247)
Q Consensus 19 ~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~--~l~g~~i~v~~~~~~ 96 (247)
-.|||+|||.++++++|+.+|++||+|.++.|+++ ||||..++...|..|++|.+ .|+|..|.|+.+..+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 36899999999999999999999999999999976 99999999999999999544 999999999988754
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCc
Q 025858 97 GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGT 176 (247)
Q Consensus 97 ~~~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~ 176 (247)
...+++|+|+|+.+.++.++|+..|++||.|.+|+|.+| |+||.|+-.++|..|+..|+++++.|+
T Consensus 75 ------sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk 140 (346)
T KOG0109|consen 75 ------SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGK 140 (346)
T ss_pred ------CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccc
Confidence 335789999999999999999999999999999999766 999999999999999999999999999
Q ss_pred EEEEeecccCcc
Q 025858 177 QVSLIGWSPVNQ 188 (247)
Q Consensus 177 ~l~v~~a~~~~~ 188 (247)
.++|.....+..
T Consensus 141 ~m~vq~stsrlr 152 (346)
T KOG0109|consen 141 RMHVQLSTSRLR 152 (346)
T ss_pred eeeeeeeccccc
Confidence 999987765443
No 24
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.93 E-value=2.7e-25 Score=185.83 Aligned_cols=175 Identities=41% Similarity=0.759 Sum_probs=161.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEEeeecC
Q 025858 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIP 95 (247)
Q Consensus 17 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v~~~~~ 95 (247)
+.+.|||++|+.++|++.|++.|.+||+|.++.+++|+.+++++||+||+|.+.+.+..++. ..|.|+|+.|.++.+.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 78899999999999999999999999999999999999999999999999999999999998 68899999999999988
Q ss_pred CCCCCCCCC--ccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCccc
Q 025858 96 KGSGQSKDF--KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDM 173 (247)
Q Consensus 96 ~~~~~~~~~--~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~ 173 (247)
......... ...+|||++||..++++++++.|.+||.|..+.++.|..+.+++||+||.|.+++++.+++. .+-+.|
T Consensus 85 r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~ 163 (311)
T KOG4205|consen 85 REDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDF 163 (311)
T ss_pred cccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeee
Confidence 776543332 46799999999999999999999999999999999999999999999999999999999987 488999
Q ss_pred CCcEEEEeecccCcccccc
Q 025858 174 AGTQVSLIGWSPVNQLLKG 192 (247)
Q Consensus 174 ~g~~l~v~~a~~~~~~~~~ 192 (247)
+|+++.|+.|.++......
T Consensus 164 ~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 164 NGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred cCceeeEeeccchhhcccc
Confidence 9999999999998876643
No 25
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=2.7e-24 Score=185.64 Aligned_cols=154 Identities=21% Similarity=0.465 Sum_probs=141.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeeecCC
Q 025858 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIPK 96 (247)
Q Consensus 19 ~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~~~~ 96 (247)
..|||+ +++||..|.++|+.+|++.++++.+|. | +-|||||.|.++++|.+|++ +...++|++|++.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 358898 999999999999999999999999998 6 99999999999999999999 666999999999998755
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCc
Q 025858 97 GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGT 176 (247)
Q Consensus 97 ~~~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~ 176 (247)
+.. |||.||+++++..+|.++|+.||.|.+|++.++.. | ++|| ||+|++.++|.+|+..+||..+.|+
T Consensus 76 ~~~---------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~k 143 (369)
T KOG0123|consen 76 PSL---------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGK 143 (369)
T ss_pred Cce---------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCC
Confidence 432 99999999999999999999999999999999965 4 9999 9999999999999999999999999
Q ss_pred EEEEeecccCcccc
Q 025858 177 QVSLIGWSPVNQLL 190 (247)
Q Consensus 177 ~l~v~~a~~~~~~~ 190 (247)
+|-|.....+....
T Consensus 144 ki~vg~~~~~~er~ 157 (369)
T KOG0123|consen 144 KIYVGLFERKEERE 157 (369)
T ss_pred eeEEeeccchhhhc
Confidence 99997766655443
No 26
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=8.3e-25 Score=174.34 Aligned_cols=142 Identities=20% Similarity=0.413 Sum_probs=125.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHhccCccCCeEEEEeee
Q 025858 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRT 93 (247)
Q Consensus 14 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~l~g~~i~v~~~ 93 (247)
++...+||||+||+..+||+-|..+|.+.|.+++++++.| .|.|.|+
T Consensus 2 ~~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~---------------------------------e~~v~wa 48 (321)
T KOG0148|consen 2 GSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD---------------------------------ELKVNWA 48 (321)
T ss_pred CCCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh---------------------------------hhccccc
Confidence 4567899999999999999999999999999999999876 3566676
Q ss_pred cCCCCCCCCCC-ccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcc
Q 025858 94 IPKGSGQSKDF-KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMID 172 (247)
Q Consensus 94 ~~~~~~~~~~~-~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~ 172 (247)
..+........ ..-.+||+.|.++++-++|++.|.+||+|.++++++|..|+++|||+||.|.+.++|++||..|||..
T Consensus 49 ~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqW 128 (321)
T KOG0148|consen 49 TAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQW 128 (321)
T ss_pred cCcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCee
Confidence 65543322222 23469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEeecccCcc
Q 025858 173 MAGTQVSLIGWSPVNQ 188 (247)
Q Consensus 173 ~~g~~l~v~~a~~~~~ 188 (247)
|.+|.|+-+||..++.
T Consensus 129 lG~R~IRTNWATRKp~ 144 (321)
T KOG0148|consen 129 LGRRTIRTNWATRKPS 144 (321)
T ss_pred eccceeeccccccCcc
Confidence 9999999999988773
No 27
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.5e-24 Score=172.70 Aligned_cols=174 Identities=20% Similarity=0.414 Sum_probs=152.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHhccC---ccCCe--EEE
Q 025858 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH---IINGK--QVE 89 (247)
Q Consensus 15 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~---~l~g~--~i~ 89 (247)
....+.|||+-|...-.|+|++.+|..||.|+++.+.+.. .|.+||||||.|.+..+|..|+...| .+-|. .+.
T Consensus 16 g~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLV 94 (371)
T KOG0146|consen 16 GGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLV 94 (371)
T ss_pred CccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceE
Confidence 3367889999999999999999999999999999999988 89999999999999999999998332 56553 467
Q ss_pred EeeecCCCCC----------------------------------------------------------------------
Q 025858 90 IKRTIPKGSG---------------------------------------------------------------------- 99 (247)
Q Consensus 90 v~~~~~~~~~---------------------------------------------------------------------- 99 (247)
|+++......
T Consensus 95 VK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl 174 (371)
T KOG0146|consen 95 VKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGL 174 (371)
T ss_pred EEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccc
Confidence 7776543211
Q ss_pred --------------------------------------------------------------------------------
Q 025858 100 -------------------------------------------------------------------------------- 99 (247)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (247)
T Consensus 175 ~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~ 254 (371)
T KOG0146|consen 175 AAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYA 254 (371)
T ss_pred ccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHh
Confidence
Q ss_pred ------------------------CCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEE
Q 025858 100 ------------------------QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIF 155 (247)
Q Consensus 100 ------------------------~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f 155 (247)
..+..+.++|||..||.+..+.+|.+.|-+||-|++.+++.|+.|+.+|.|+||.|
T Consensus 255 Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSf 334 (371)
T KOG0146|consen 255 AAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSF 334 (371)
T ss_pred hhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEec
Confidence 23445677899999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHcCCCcccCCcEEEEeecccCccc
Q 025858 156 DSEEVVDEMLSKGNMIDMAGTQVSLIGWSPVNQL 189 (247)
Q Consensus 156 ~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~~~~ 189 (247)
+++.+|+.||..|||..|.=++|+|...+|+...
T Consensus 335 DNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdan 368 (371)
T KOG0146|consen 335 DNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDAN 368 (371)
T ss_pred CCchhHHHHHHHhcchhhhhhhhhhhhcCccccC
Confidence 9999999999999999999999999998887653
No 28
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.90 E-value=3.4e-24 Score=185.63 Aligned_cols=174 Identities=22% Similarity=0.417 Sum_probs=154.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEE
Q 025858 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEI 90 (247)
Q Consensus 12 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v 90 (247)
...++..+|||+-.|+...++.+|.++|+.+|+|.+|+++.|+.++.++|.|||+|.|.+.+..|+. .|+.+.|.+|.|
T Consensus 173 ~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~v 252 (549)
T KOG0147|consen 173 SPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIV 252 (549)
T ss_pred CchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEe
Confidence 4445678899999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred eeecCCCCC--------C--CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHH
Q 025858 91 KRTIPKGSG--------Q--SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEV 160 (247)
Q Consensus 91 ~~~~~~~~~--------~--~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 160 (247)
+.+...... . .-..+-..|||+||..++++++|+.+|++||.|+.|.+++|..||.++||+|++|.+.++
T Consensus 253 q~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 253 QLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred cccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHH
Confidence 876543221 1 112233349999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcccCCcEEEEeeccc
Q 025858 161 VDEMLSKGNMIDMAGTQVSLIGWSP 185 (247)
Q Consensus 161 a~~ai~~l~~~~~~g~~l~v~~a~~ 185 (247)
|.+|+..|||.++.|+.|+|.....
T Consensus 333 ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 333 ARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred HHHHHHHhccceecCceEEEEEeee
Confidence 9999999999999999999965544
No 29
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=4.5e-23 Score=173.78 Aligned_cols=171 Identities=23% Similarity=0.426 Sum_probs=151.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--c-cCccCC--eEEEE
Q 025858 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--D-THIING--KQVEI 90 (247)
Q Consensus 16 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~-~~~l~g--~~i~v 90 (247)
...+.|||+-|+..+||.+|+++|++||.|+++.+++|. .+.+||||||.|.+.+.|..|++ + .+.+.| .+|.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 447899999999999999999999999999999999998 89999999999999999999999 3 236666 46899
Q ss_pred eeecCCCCC-----------------------------------------------------------------------
Q 025858 91 KRTIPKGSG----------------------------------------------------------------------- 99 (247)
Q Consensus 91 ~~~~~~~~~----------------------------------------------------------------------- 99 (247)
+|+.++...
T Consensus 201 kFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~ 280 (510)
T KOG0144|consen 201 KFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAAL 280 (510)
T ss_pred EecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHh
Confidence 998765432
Q ss_pred --------------------------------------------------------------------------------
Q 025858 100 -------------------------------------------------------------------------------- 99 (247)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (247)
T Consensus 281 ~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~ 360 (510)
T KOG0144|consen 281 AAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPV 360 (510)
T ss_pred hhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcc
Confidence
Q ss_pred ---------------------------------------------------------CCCCCccccEEEcCCCCCCCHHH
Q 025858 100 ---------------------------------------------------------QSKDFKTKKIFVGGIPSSVSEDE 122 (247)
Q Consensus 100 ---------------------------------------------------------~~~~~~~~~l~v~~l~~~~t~~~ 122 (247)
..+..+...|||.+||.+.-+.+
T Consensus 361 aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~ 440 (510)
T KOG0144|consen 361 AASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQD 440 (510)
T ss_pred cccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHH
Confidence 11222233799999999999999
Q ss_pred HHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeecccCc
Q 025858 123 LKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWSPVN 187 (247)
Q Consensus 123 l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~~ 187 (247)
|...|..||.|.+.++.-|+.|+-++.|+||.|++..+|..||..|||..+.+++++|.....+.
T Consensus 441 l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~ 505 (510)
T KOG0144|consen 441 LIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRN 505 (510)
T ss_pred HHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccC
Confidence 99999999999999999999999999999999999999999999999999999999998876544
No 30
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.89 E-value=8.7e-23 Score=181.36 Aligned_cols=169 Identities=25% Similarity=0.421 Sum_probs=145.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCC---CCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeeec
Q 025858 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYT---GQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTI 94 (247)
Q Consensus 20 ~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~~ 94 (247)
+|||.||+++.|.+++...|...|.|.++.|...+.. -.|.|||||+|.+.++|..|++ ++..|+|+.|.|+.+.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 3999999999999999999999999999988765522 2356999999999999999999 6889999999999987
Q ss_pred CCCCC-----CCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCC
Q 025858 95 PKGSG-----QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN 169 (247)
Q Consensus 95 ~~~~~-----~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~ 169 (247)
..+.. .......++|.|.|||...+..+++++|..||.+.+|+++.--..+.++|||||+|-++.+|.+|+.+|.
T Consensus 597 ~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~ 676 (725)
T KOG0110|consen 597 NKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALG 676 (725)
T ss_pred CccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhc
Confidence 22221 1112234689999999999999999999999999999998874456789999999999999999999999
Q ss_pred CcccCCcEEEEeecccCcc
Q 025858 170 MIDMAGTQVSLIGWSPVNQ 188 (247)
Q Consensus 170 ~~~~~g~~l~v~~a~~~~~ 188 (247)
++.+.||.|.+.||.....
T Consensus 677 STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 677 STHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred ccceechhhheehhccchH
Confidence 9999999999999986544
No 31
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.9e-21 Score=167.99 Aligned_cols=161 Identities=22% Similarity=0.459 Sum_probs=145.5
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeeecCCCC
Q 025858 21 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGS 98 (247)
Q Consensus 21 l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~~~~~~ 98 (247)
|||.||++++|..+|.++|+.||+|.++++..+. .| ++|| ||+|.+++.|.+|++ ++..+.+++|.|........
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 9999999999999999999999999999999998 44 9999 999999999999999 88899999999988776544
Q ss_pred CCCC----CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccC
Q 025858 99 GQSK----DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMA 174 (247)
Q Consensus 99 ~~~~----~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~ 174 (247)
.... ...-..+++.+++.+.+++.|.++|+.+|.|..+.++.+.. +.+++|+||.|.+.++|..|+..||+..+.
T Consensus 156 r~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~-g~~~~~gfv~f~~~e~a~~av~~l~~~~~~ 234 (369)
T KOG0123|consen 156 REAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSI-GKSKGFGFVNFENPEDAKKAVETLNGKIFG 234 (369)
T ss_pred hcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCC-CCCCCccceeecChhHHHHHHHhccCCcCC
Confidence 3222 22355799999999999999999999999999999999855 669999999999999999999999999999
Q ss_pred CcEEEEeeccc
Q 025858 175 GTQVSLIGWSP 185 (247)
Q Consensus 175 g~~l~v~~a~~ 185 (247)
+..+-|..+..
T Consensus 235 ~~~~~V~~aqk 245 (369)
T KOG0123|consen 235 DKELYVGRAQK 245 (369)
T ss_pred ccceeeccccc
Confidence 99999977766
No 32
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.87 E-value=1.6e-20 Score=169.80 Aligned_cols=79 Identities=15% Similarity=0.400 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeee
Q 025858 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRT 93 (247)
Q Consensus 16 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~ 93 (247)
...++|||+|||+++++++|+++|+.||.|.++++.+++.++.++|||||+|.+.++|.+|++ ++..++|+.|+|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 456799999999999999999999999999999999999889999999999999999999998 788999999999876
Q ss_pred c
Q 025858 94 I 94 (247)
Q Consensus 94 ~ 94 (247)
.
T Consensus 282 i 282 (612)
T TIGR01645 282 V 282 (612)
T ss_pred C
Confidence 5
No 33
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=4.1e-19 Score=134.63 Aligned_cols=151 Identities=24% Similarity=0.379 Sum_probs=127.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEee
Q 025858 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKR 92 (247)
Q Consensus 15 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~ 92 (247)
.+.+++|||+|||.++.|.+|.++|-+||.|.+|.+... .....||||+|++..+|+.|+. ++-.++|..|+|.+
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 456889999999999999999999999999999988543 3456799999999999999998 88899999999998
Q ss_pred ecCCCCC----------------------CCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeE
Q 025858 93 TIPKGSG----------------------QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGF 150 (247)
Q Consensus 93 ~~~~~~~----------------------~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~ 150 (247)
+..-... .+.......|.|.+||++-+|+||++...+-|.|....+.+| |.
T Consensus 80 prggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~ 152 (241)
T KOG0105|consen 80 PRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GV 152 (241)
T ss_pred ccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cc
Confidence 7543211 111223447999999999999999999999999998888776 37
Q ss_pred EEEEEcCHHHHHHHHHcCCCcccCC
Q 025858 151 GFVIFDSEEVVDEMLSKGNMIDMAG 175 (247)
Q Consensus 151 afV~f~~~~~a~~ai~~l~~~~~~g 175 (247)
+.|+|...|+.+-|+..|....+..
T Consensus 153 GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 153 GVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred eeeeeeehhhHHHHHHhhccccccC
Confidence 9999999999999999988776654
No 34
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.81 E-value=3.8e-19 Score=134.77 Aligned_cols=89 Identities=27% Similarity=0.542 Sum_probs=82.7
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEee
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIG 182 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 182 (247)
....++|||+|||..+++++|+++|++||.|.++.++.++.+++++|||||+|.+.++|+.|++.||+..+.|+.|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccccc
Q 025858 183 WSPVNQLLK 191 (247)
Q Consensus 183 a~~~~~~~~ 191 (247)
+.++.....
T Consensus 111 a~~~~~~~~ 119 (144)
T PLN03134 111 ANDRPSAPR 119 (144)
T ss_pred CCcCCCCCC
Confidence 987665443
No 35
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.80 E-value=2.1e-18 Score=135.19 Aligned_cols=164 Identities=17% Similarity=0.290 Sum_probs=138.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHH----HhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCe
Q 025858 13 GDGASPGKIFIGGLPKDTTYATFNK----HFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGK 86 (247)
Q Consensus 13 ~~~~~~~~l~v~nLp~~~te~~l~~----~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~ 86 (247)
.+..+..||||.||+..+..++|+. +|++||.|.+|...+ +.+.+|.|||.|++.+.|..|+. ++-.+.|+
T Consensus 4 ~~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK 80 (221)
T KOG4206|consen 4 MSVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGK 80 (221)
T ss_pred cccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCc
Confidence 3455666999999999999999998 999999999888765 67899999999999999999999 67789999
Q ss_pred EEEEeeecCCCCC----------------------------------------------CCCCCccccEEEcCCCCCCCH
Q 025858 87 QVEIKRTIPKGSG----------------------------------------------QSKDFKTKKIFVGGIPSSVSE 120 (247)
Q Consensus 87 ~i~v~~~~~~~~~----------------------------------------------~~~~~~~~~l~v~~l~~~~t~ 120 (247)
.++|.++..+... .....+...+++.|||.+++.
T Consensus 81 ~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~ 160 (221)
T KOG4206|consen 81 PMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESES 160 (221)
T ss_pred hhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhH
Confidence 9999987543211 011345668999999999999
Q ss_pred HHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccC-CcEEEEeecc
Q 025858 121 DELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMA-GTQVSLIGWS 184 (247)
Q Consensus 121 ~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~-g~~l~v~~a~ 184 (247)
+.+..+|.+|....+++++.. -++.|||+|.+...|..|.+.+.+..+. ...++|.+++
T Consensus 161 e~l~~lf~qf~g~keir~i~~-----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 161 EMLSDLFEQFPGFKEIRLIPP-----RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHHHHhhCcccceeEeccC-----CCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999999999998775 3569999999999999999999998876 7778877654
No 36
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.79 E-value=8.6e-19 Score=152.27 Aligned_cols=160 Identities=20% Similarity=0.316 Sum_probs=129.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeeecCC
Q 025858 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIPK 96 (247)
Q Consensus 19 ~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~~~~ 96 (247)
..|||+||.+++||++|+.+|+.||.|+.|.+.+|..||.++||+||+|.+.++|.+|+. |+-+|-|+.|+|..-...
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 349999999999999999999999999999999999999999999999999999999988 778999999988542211
Q ss_pred CCC--------------------------------------------------------------------CCCC-----
Q 025858 97 GSG--------------------------------------------------------------------QSKD----- 103 (247)
Q Consensus 97 ~~~--------------------------------------------------------------------~~~~----- 103 (247)
-.. ..+.
T Consensus 359 ~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~ 438 (549)
T KOG0147|consen 359 VDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPA 438 (549)
T ss_pred cccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccc
Confidence 000 0000
Q ss_pred --CccccEEEcCCC--CCCC--------HHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCc
Q 025858 104 --FKTKKIFVGGIP--SSVS--------EDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMI 171 (247)
Q Consensus 104 --~~~~~l~v~~l~--~~~t--------~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~ 171 (247)
.++.|+.+.|+= .+.| .+|+.+.|.+||.|..|.+-+. +.|+.||.|.+.++|..|+.+|||.
T Consensus 439 ~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~alhgr 513 (549)
T KOG0147|consen 439 FDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKALHGR 513 (549)
T ss_pred cCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHHhhh
Confidence 223345555552 2222 2789999999999998887332 4589999999999999999999999
Q ss_pred ccCCcEEEEeec
Q 025858 172 DMAGTQVSLIGW 183 (247)
Q Consensus 172 ~~~g~~l~v~~a 183 (247)
+|.|+.|...+-
T Consensus 514 WF~gr~Ita~~~ 525 (549)
T KOG0147|consen 514 WFAGRMITAKYL 525 (549)
T ss_pred hhccceeEEEEe
Confidence 999999998774
No 37
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.79 E-value=4.7e-18 Score=145.99 Aligned_cols=167 Identities=19% Similarity=0.352 Sum_probs=133.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEEee
Q 025858 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKR 92 (247)
Q Consensus 14 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v~~ 92 (247)
+......|.+++||.++|++||+++|+.++ |+++.+.+. +|+..|-|||+|.+++++++|++ +...+..+.|.|..
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFT 82 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEc
Confidence 345566799999999999999999999996 677666554 79999999999999999999999 66678888898877
Q ss_pred ecCCCCCC-------CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHH
Q 025858 93 TIPKGSGQ-------SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165 (247)
Q Consensus 93 ~~~~~~~~-------~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai 165 (247)
+...+... ........|.+++||..||++||.+||+..-.+...-++.....+++.|-|||+|++.+.|++|+
T Consensus 83 ~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al 162 (510)
T KOG4211|consen 83 AGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIAL 162 (510)
T ss_pred cCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHH
Confidence 65443321 11134567999999999999999999998855544333344455789999999999999999999
Q ss_pred HcCCCcccCCcEEEEeecc
Q 025858 166 SKGNMIDMAGTQVSLIGWS 184 (247)
Q Consensus 166 ~~l~~~~~~g~~l~v~~a~ 184 (247)
.. |...|.-+-|.|-.+.
T Consensus 163 ~r-hre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 163 GR-HRENIGHRYIEVFRSS 180 (510)
T ss_pred HH-HHHhhccceEEeehhH
Confidence 96 7788888888885554
No 38
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.76 E-value=1.4e-17 Score=126.24 Aligned_cols=86 Identities=31% Similarity=0.608 Sum_probs=78.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEE
Q 025858 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEI 90 (247)
Q Consensus 13 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v 90 (247)
+....+++|||+|||.++||++|+++|++||.|.++.++.|+.+++++|||||+|.+.++|++|++ +++.|+|+.|+|
T Consensus 29 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V 108 (144)
T PLN03134 29 SLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRV 108 (144)
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 334567789999999999999999999999999999999999999999999999999999999998 788999999999
Q ss_pred eeecCCCC
Q 025858 91 KRTIPKGS 98 (247)
Q Consensus 91 ~~~~~~~~ 98 (247)
.++.+...
T Consensus 109 ~~a~~~~~ 116 (144)
T PLN03134 109 NPANDRPS 116 (144)
T ss_pred EeCCcCCC
Confidence 99876544
No 39
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.71 E-value=6.1e-17 Score=139.29 Aligned_cols=88 Identities=23% Similarity=0.332 Sum_probs=82.0
Q ss_pred CCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEe
Q 025858 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLI 181 (247)
Q Consensus 102 ~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 181 (247)
.....++|||++||+++|+++|+++|++||.|++|+|++|..+++++|||||+|.+.++|.+|++.||+..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCccc
Q 025858 182 GWSPVNQL 189 (247)
Q Consensus 182 ~a~~~~~~ 189 (247)
++.+....
T Consensus 183 ~a~p~~~~ 190 (346)
T TIGR01659 183 YARPGGES 190 (346)
T ss_pred cccccccc
Confidence 98775443
No 40
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.71 E-value=7.3e-16 Score=127.28 Aligned_cols=170 Identities=19% Similarity=0.325 Sum_probs=137.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeE--------EEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccC
Q 025858 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITD--------SVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIIN 84 (247)
Q Consensus 15 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~--------i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~ 84 (247)
+..++.|||.|||.++|.+++.++|+.+|.|.. |++.++. .|..+|-|++.|...+++..|++ +...+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 345667999999999999999999999997754 7888887 59999999999999999999999 788999
Q ss_pred CeEEEEeeecCCCC----------------------------------CCCCCCccccEEEcCCCC----CCC-------
Q 025858 85 GKQVEIKRTIPKGS----------------------------------GQSKDFKTKKIFVGGIPS----SVS------- 119 (247)
Q Consensus 85 g~~i~v~~~~~~~~----------------------------------~~~~~~~~~~l~v~~l~~----~~t------- 119 (247)
|+.|+|..+.-... ........++|.+.|+=. ..+
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 99999987642110 011223456788888732 222
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeecccCccc
Q 025858 120 EDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWSPVNQL 189 (247)
Q Consensus 120 ~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~~~~ 189 (247)
+++|.+-+++||.|.+|.+.- ..+.|.+-|.|.+.++|..||+.|+|+.+.||+|.......+...
T Consensus 290 kedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~~ 355 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTKF 355 (382)
T ss_pred HHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCccee
Confidence 368888899999999998753 336789999999999999999999999999999999887665443
No 41
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.69 E-value=1.5e-16 Score=105.52 Aligned_cols=70 Identities=34% Similarity=0.762 Sum_probs=67.1
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEE
Q 025858 109 IFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVS 179 (247)
Q Consensus 109 l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~ 179 (247)
|||+|||+.+|+++|+++|++||.|..+.++.+ .++.++++|||+|.+.++|.+|++.|||..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 6688999999999999999999999999999999885
No 42
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.68 E-value=1.7e-15 Score=128.55 Aligned_cols=163 Identities=22% Similarity=0.384 Sum_probs=137.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhc-cCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeeec
Q 025858 18 PGKIFIGGLPKDTTYATFNKHFG-KYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTI 94 (247)
Q Consensus 18 ~~~l~v~nLp~~~te~~l~~~f~-~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~~ 94 (247)
.+.+||.|||+++.+++|+++|. +.|+|+.|.++.|. .|+++|||.|+|+++|.+++|++ +.+.++||+|.|+-..
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 44599999999999999999997 57899999999998 89999999999999999999999 7789999999987543
Q ss_pred CCCCC------------------------------------------CC-------------------------------
Q 025858 95 PKGSG------------------------------------------QS------------------------------- 101 (247)
Q Consensus 95 ~~~~~------------------------------------------~~------------------------------- 101 (247)
..... ..
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 21000 00
Q ss_pred --------CCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCccc
Q 025858 102 --------KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDM 173 (247)
Q Consensus 102 --------~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~ 173 (247)
..+...++||.||...+....|++.|.--|.|+.+.+-.|+. |.++|+|.++|+.+-+|-.||..|++.-+
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~~~g~ 281 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDRQGL 281 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhhccCCC
Confidence 011123689999999999999999999999999999988866 78999999999999999999998887667
Q ss_pred CCcEEEEee
Q 025858 174 AGTQVSLIG 182 (247)
Q Consensus 174 ~g~~l~v~~ 182 (247)
..++..++.
T Consensus 282 ~~~~~~~Rl 290 (608)
T KOG4212|consen 282 FDRRMTVRL 290 (608)
T ss_pred ccccceeec
Confidence 777766654
No 43
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=1.4e-16 Score=125.98 Aligned_cols=149 Identities=26% Similarity=0.452 Sum_probs=125.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeeecCC
Q 025858 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIPK 96 (247)
Q Consensus 19 ~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~~~~ 96 (247)
..|||++||+.+.+.+|..+|..||.+.++.+.. ||+||+|.+.-+|..|+. ++..|.|..+.+.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4689999999999999999999999998887743 689999999999999998 778888888888887642
Q ss_pred ------CCC----------CCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHH
Q 025858 97 ------GSG----------QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEV 160 (247)
Q Consensus 97 ------~~~----------~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 160 (247)
+.. .........+.|.++...+.+.+|.+.|.++|.+....+ ..+++||+|++.++
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~d 145 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQED 145 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhh
Confidence 110 011234557889999999999999999999999855544 34589999999999
Q ss_pred HHHHHHcCCCcccCCcEEEEeec
Q 025858 161 VDEMLSKGNMIDMAGTQVSLIGW 183 (247)
Q Consensus 161 a~~ai~~l~~~~~~g~~l~v~~a 183 (247)
|.+|+..|++..+.|+.|.+...
T Consensus 146 a~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 146 AKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hhhcchhccchhhcCceeeeccc
Confidence 99999999999999999999443
No 44
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=3.7e-16 Score=123.47 Aligned_cols=84 Identities=23% Similarity=0.364 Sum_probs=80.7
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEee
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIG 182 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 182 (247)
..+.++|.|.||+.+++|++|+++|.+||.|.++.+.+|+.||.++|||||.|.++++|.+||+.|||.-+..-.|+|.|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 025858 183 WSPV 186 (247)
Q Consensus 183 a~~~ 186 (247)
++|+
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9886
No 45
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=1.6e-16 Score=125.03 Aligned_cols=81 Identities=30% Similarity=0.655 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHhc-cCccCCeEEEEeee
Q 025858 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED-THIINGKQVEIKRT 93 (247)
Q Consensus 15 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~l~g~~i~v~~~ 93 (247)
+...+.|||++|+..++.++|+++|++||+|++..|+.|+.++++|||+||+|+|.++|.+|+++ ...|+||+..++.+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLA 88 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchh
Confidence 45567899999999999999999999999999999999999999999999999999999999994 56999999999887
Q ss_pred cC
Q 025858 94 IP 95 (247)
Q Consensus 94 ~~ 95 (247)
.-
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 54
No 46
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=3e-15 Score=124.49 Aligned_cols=169 Identities=15% Similarity=0.260 Sum_probs=134.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEe
Q 025858 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIK 91 (247)
Q Consensus 14 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~ 91 (247)
+.+...+|||..+.++.+|+||+..|+.||+|..|.+-+++.++..+||+||+|.+..+...|+. |...++|..++|.
T Consensus 206 eAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVG 285 (544)
T KOG0124|consen 206 EAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVG 285 (544)
T ss_pred HHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecc
Confidence 34567799999999999999999999999999999999999889999999999999999999998 6678999999997
Q ss_pred eecCCCCC------------------------------------------------------------------------
Q 025858 92 RTIPKGSG------------------------------------------------------------------------ 99 (247)
Q Consensus 92 ~~~~~~~~------------------------------------------------------------------------ 99 (247)
.+-..+..
T Consensus 286 k~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi 365 (544)
T KOG0124|consen 286 KCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVI 365 (544)
T ss_pred cccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCcee
Confidence 64322110
Q ss_pred --------------------------------------------------------------------------CCCCCc
Q 025858 100 --------------------------------------------------------------------------QSKDFK 105 (247)
Q Consensus 100 --------------------------------------------------------------------------~~~~~~ 105 (247)
-.....
T Consensus 366 ~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~ 445 (544)
T KOG0124|consen 366 TGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQE 445 (544)
T ss_pred ccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhcccc
Confidence 000011
Q ss_pred cccEEEcCC--CCCCC---HHHHHHHHHhcCCeEEEEEEecCCCCCc----eeEEEEEEcCHHHHHHHHHcCCCcccCCc
Q 025858 106 TKKIFVGGI--PSSVS---EDELKNFFSKYGKVLEHQIIRDHETNRS----RGFGFVIFDSEEVVDEMLSKGNMIDMAGT 176 (247)
Q Consensus 106 ~~~l~v~~l--~~~~t---~~~l~~~f~~~G~i~~v~i~~~~~~~~~----~g~afV~f~~~~~a~~ai~~l~~~~~~g~ 176 (247)
++.+.++|+ |.+++ +.+|.+.|.+||.|.+|.|...+.++.. ---.||+|+...++.+|++.|+|+.|.|+
T Consensus 446 S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr 525 (544)
T KOG0124|consen 446 STVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGR 525 (544)
T ss_pred CcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCc
Confidence 224666776 34444 4689999999999999988777654422 12379999999999999999999999999
Q ss_pred EEEEee
Q 025858 177 QVSLIG 182 (247)
Q Consensus 177 ~l~v~~ 182 (247)
++....
T Consensus 526 ~VvAE~ 531 (544)
T KOG0124|consen 526 KVVAEV 531 (544)
T ss_pred eeehhh
Confidence 987643
No 47
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.65 E-value=8.9e-16 Score=101.77 Aligned_cols=68 Identities=25% Similarity=0.686 Sum_probs=64.3
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEE
Q 025858 21 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVE 89 (247)
Q Consensus 21 l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~ 89 (247)
|||+|||.++|+++|+++|++||.|..+.+..+ .++..+++|||+|.+.++|++|++ ++..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 488999999999999999999999 78899999875
No 48
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=3.9e-16 Score=122.86 Aligned_cols=82 Identities=29% Similarity=0.519 Sum_probs=75.9
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEee
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIG 182 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 182 (247)
+..-++|||++|+++++.+.|++.|++||+|++..++.|+.||++||||||+|.+.++|.+|++. -...|+||+..|+.
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 44567999999999999999999999999999999999999999999999999999999999996 55789999999987
Q ss_pred ccc
Q 025858 183 WSP 185 (247)
Q Consensus 183 a~~ 185 (247)
|.-
T Consensus 88 A~l 90 (247)
T KOG0149|consen 88 ASL 90 (247)
T ss_pred hhh
Confidence 754
No 49
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=1.4e-15 Score=135.79 Aligned_cols=165 Identities=20% Similarity=0.296 Sum_probs=129.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEe
Q 025858 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIK 91 (247)
Q Consensus 14 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~ 91 (247)
..+..+.++|+|||..+..++|.++|..||.|..+.+. + .|. -|+|+|.+..+|.+|.+ +...+...++.+.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~-~G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle 454 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--P-GGT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLE 454 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecC--c-ccc---eeeeeecCccchHHHHHHhchhhhccCccccc
Confidence 45667889999999999999999999999999988443 2 222 49999999999999998 4444555555555
Q ss_pred eecCCCCC-----------------------------------C-----------CCCCccccEEEcCCCCCCCHHHHHH
Q 025858 92 RTIPKGSG-----------------------------------Q-----------SKDFKTKKIFVGGIPSSVSEDELKN 125 (247)
Q Consensus 92 ~~~~~~~~-----------------------------------~-----------~~~~~~~~l~v~~l~~~~t~~~l~~ 125 (247)
|+....-. . ......++|||.||+.+.|.+++..
T Consensus 455 ~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~ 534 (725)
T KOG0110|consen 455 WAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLED 534 (725)
T ss_pred cChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHH
Confidence 54211000 0 0001122499999999999999999
Q ss_pred HHHhcCCeEEEEEEecCCC---CCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeecc
Q 025858 126 FFSKYGKVLEHQIIRDHET---NRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWS 184 (247)
Q Consensus 126 ~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 184 (247)
.|...|.|.++.|...+.. -.+.|||||+|.+.++|..|+..|+|+.+.|+.|.|+++.
T Consensus 535 ~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 535 LFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred HHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 9999999999988766432 1356999999999999999999999999999999999987
No 50
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=1.7e-15 Score=133.16 Aligned_cols=176 Identities=24% Similarity=0.372 Sum_probs=140.4
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeE
Q 025858 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQ 87 (247)
Q Consensus 10 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~ 87 (247)
..+......+.++|++||...++.+++++...||.+....++.+..+|-++||||.+|.+......|+. ++..++++.
T Consensus 281 ~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~ 360 (500)
T KOG0120|consen 281 ASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKK 360 (500)
T ss_pred cccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCce
Confidence 345556677889999999999999999999999999999999999999999999999999999999998 888999999
Q ss_pred EEEeeecCCCCCC--------------------CCCCccccEEEcCCCC--CC-C-------HHHHHHHHHhcCCeEEEE
Q 025858 88 VEIKRTIPKGSGQ--------------------SKDFKTKKIFVGGIPS--SV-S-------EDELKNFFSKYGKVLEHQ 137 (247)
Q Consensus 88 i~v~~~~~~~~~~--------------------~~~~~~~~l~v~~l~~--~~-t-------~~~l~~~f~~~G~i~~v~ 137 (247)
+.|..+....... ....++..|.+.|+=. +. . -|+++..|.+||.|..|.
T Consensus 361 lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ 440 (500)
T KOG0120|consen 361 LVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVE 440 (500)
T ss_pred eEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEe
Confidence 9998775432211 1122233344333311 11 1 157778889999999999
Q ss_pred EEecCCC---CCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeeccc
Q 025858 138 IIRDHET---NRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWSP 185 (247)
Q Consensus 138 i~~~~~~---~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 185 (247)
++++... .-..|..||+|.+.+++++|.++|+|+.+.|+.|...+-.+
T Consensus 441 ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 441 IPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred cCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 9888322 23467899999999999999999999999999999987654
No 51
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=1.8e-15 Score=119.59 Aligned_cols=80 Identities=19% Similarity=0.385 Sum_probs=76.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeeec
Q 025858 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTI 94 (247)
Q Consensus 17 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~~ 94 (247)
++.+|.|.|||.+++|++|+++|..||.|..+.|.+|+.||.++|||||.|.+.++|.+|+. +++-++.--|+|.|+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 67789999999999999999999999999999999999999999999999999999999999 8888888889999998
Q ss_pred CC
Q 025858 95 PK 96 (247)
Q Consensus 95 ~~ 96 (247)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 75
No 52
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=1.2e-15 Score=125.27 Aligned_cols=86 Identities=26% Similarity=0.420 Sum_probs=78.6
Q ss_pred CccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeec
Q 025858 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGW 183 (247)
Q Consensus 104 ~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 183 (247)
...++|+|.|||....|-||+..|++||+|.+|.|+.+. ..+||||||+|++.+||++|-++|||..+.||+|+|+.|
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 346789999999999999999999999999999999975 459999999999999999999999999999999999999
Q ss_pred ccCccccc
Q 025858 184 SPVNQLLK 191 (247)
Q Consensus 184 ~~~~~~~~ 191 (247)
..+...++
T Consensus 172 TarV~n~K 179 (376)
T KOG0125|consen 172 TARVHNKK 179 (376)
T ss_pred chhhccCC
Confidence 88755544
No 53
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.62 E-value=1.1e-14 Score=121.09 Aligned_cols=149 Identities=23% Similarity=0.479 Sum_probs=117.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeeecC
Q 025858 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIP 95 (247)
Q Consensus 18 ~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~~~ 95 (247)
.++|||+|||.++|+++|+++|..||.+..+.+..++.++.++|+|||+|.+.++|..|+. ++..+.|+.|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6999999999999999999999999999999999998899999999999999999999999 67899999999999542
Q ss_pred ----CCCCC----------------CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEE
Q 025858 96 ----KGSGQ----------------SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIF 155 (247)
Q Consensus 96 ----~~~~~----------------~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f 155 (247)
..... ........+++.+++..++..++...|..+|.+....+.............++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 11111 1122455799999999999999999999999997776655543333444444444
Q ss_pred cCHHHHHHHHH
Q 025858 156 DSEEVVDEMLS 166 (247)
Q Consensus 156 ~~~~~a~~ai~ 166 (247)
.....+.....
T Consensus 275 ~~~~~~~~~~~ 285 (306)
T COG0724 275 EASKDALESNS 285 (306)
T ss_pred hHHHhhhhhhc
Confidence 44444444433
No 54
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.61 E-value=3.6e-15 Score=99.17 Aligned_cols=70 Identities=34% Similarity=0.703 Sum_probs=64.9
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEE
Q 025858 109 IFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVS 179 (247)
Q Consensus 109 l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~ 179 (247)
|+|+|||+++++++|+++|+.+|.|..+.+..++. +.++|+|||+|.+.++|.+|++.+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999877 89999999999999999999999999999999875
No 55
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.60 E-value=6.1e-15 Score=133.57 Aligned_cols=113 Identities=23% Similarity=0.301 Sum_probs=88.1
Q ss_pred HHHHHHHHh--ccCccCCeEEEEeeecCCCC-CCCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCC
Q 025858 70 PSVVDKVIE--DTHIINGKQVEIKRTIPKGS-GQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNR 146 (247)
Q Consensus 70 ~~~a~~a~~--~~~~l~g~~i~v~~~~~~~~-~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~ 146 (247)
.++|.+|+. ++..+........+..|... ........++|||+|||.+++|++|+++|++||.|.+++|++| .+|+
T Consensus 19 ~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~ 97 (578)
T TIGR01648 19 DEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQ 97 (578)
T ss_pred cHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCC
Confidence 466777775 44455444444444433221 1222334689999999999999999999999999999999999 7899
Q ss_pred ceeEEEEEEcCHHHHHHHHHcCCCcccC-CcEEEEeec
Q 025858 147 SRGFGFVIFDSEEVVDEMLSKGNMIDMA-GTQVSLIGW 183 (247)
Q Consensus 147 ~~g~afV~f~~~~~a~~ai~~l~~~~~~-g~~l~v~~a 183 (247)
++|||||+|.+.++|++||+.||+..+. |+.|.|.++
T Consensus 98 sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 98 NRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred ccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 9999999999999999999999999885 777766554
No 56
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.59 E-value=7.8e-15 Score=97.50 Aligned_cols=68 Identities=25% Similarity=0.647 Sum_probs=61.9
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEE
Q 025858 21 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVE 89 (247)
Q Consensus 21 l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~ 89 (247)
|+|+|||+++++++|+++|+.+|.|..+.+..++. +.++|+|||+|.+.++|.+|++ ++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999986 8999999999999999999999 55799999874
No 57
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.59 E-value=6.1e-14 Score=109.65 Aligned_cols=155 Identities=15% Similarity=0.254 Sum_probs=114.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeec-CCCCCcceEEEEEecCHHHHHHHHh--ccCccC---CeEEE
Q 025858 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKD-RYTGQPRGFGFITYADPSVVDKVIE--DTHIIN---GKQVE 89 (247)
Q Consensus 16 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~-~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~---g~~i~ 89 (247)
..-+||||.+||.++...+|..+|..|--.+...+... +....++-+||+.|.+..+|..|+. +|..++ +..++
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 35789999999999999999999999866665555433 3233467899999999999999998 666554 45677
Q ss_pred EeeecCCCCCC---------------------------------------------------C-----------------
Q 025858 90 IKRTIPKGSGQ---------------------------------------------------S----------------- 101 (247)
Q Consensus 90 v~~~~~~~~~~---------------------------------------------------~----------------- 101 (247)
+..+....... .
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P 191 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAP 191 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCC
Confidence 76653211000 0
Q ss_pred ----------CC----CccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHc
Q 025858 102 ----------KD----FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167 (247)
Q Consensus 102 ----------~~----~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~ 167 (247)
.. ..-.+|||.||.++++|++|+.+|+.|-....++|.-. | ....||++|++.+.|..|+..
T Consensus 192 ~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~---~-g~~vaf~~~~~~~~at~am~~ 267 (284)
T KOG1457|consen 192 SANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR---G-GMPVAFADFEEIEQATDAMNH 267 (284)
T ss_pred cccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC---C-CcceEeecHHHHHHHHHHHHH
Confidence 00 00017999999999999999999999976665555322 1 234799999999999999999
Q ss_pred CCCcccC
Q 025858 168 GNMIDMA 174 (247)
Q Consensus 168 l~~~~~~ 174 (247)
|+|..+.
T Consensus 268 lqg~~~s 274 (284)
T KOG1457|consen 268 LQGNLLS 274 (284)
T ss_pred hhcceec
Confidence 9887654
No 58
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.59 E-value=9.4e-15 Score=118.67 Aligned_cols=76 Identities=16% Similarity=0.267 Sum_probs=70.9
Q ss_pred cccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeeccc
Q 025858 106 TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWSP 185 (247)
Q Consensus 106 ~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 185 (247)
.++|||+|||+.+|+++|+++|+.||.|++|.|+.++. ++|||||+|.+.++|..|+. |||..+.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 57899999999999999999999999999999998853 57899999999999999996 999999999999999764
No 59
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.57 E-value=1.4e-13 Score=116.04 Aligned_cols=159 Identities=18% Similarity=0.241 Sum_probs=131.8
Q ss_pred CCeEEEcCC-CCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeeec
Q 025858 18 PGKIFIGGL-PKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTI 94 (247)
Q Consensus 18 ~~~l~v~nL-p~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~~ 94 (247)
+..|.|.|| +..+|.+.|..+|.-||+|..|+++.++. -.|+|+|.|...|+.|++ +++.+.|++|+|..+.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 678999999 56699999999999999999999998763 479999999999999999 8999999999999886
Q ss_pred CCCCCCC-------------------------------CCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC
Q 025858 95 PKGSGQS-------------------------------KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHE 143 (247)
Q Consensus 95 ~~~~~~~-------------------------------~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~ 143 (247)
...-..+ -.++..+|++.|+|++++|++++..|..-|...+.....
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff--- 448 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF--- 448 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec---
Confidence 5432210 012455899999999999999999999988655443322
Q ss_pred CCCceeEEEEEEcCHHHHHHHHHcCCCcccCCc-EEEEeeccc
Q 025858 144 TNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGT-QVSLIGWSP 185 (247)
Q Consensus 144 ~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~-~l~v~~a~~ 185 (247)
++.+.+|++.+++.|+|..|+..+|...+.+. .++|++.+.
T Consensus 449 -~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 449 -QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred -CCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 23455999999999999999999999998776 799988653
No 60
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=1e-14 Score=109.99 Aligned_cols=79 Identities=24% Similarity=0.420 Sum_probs=72.6
Q ss_pred ccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeecc
Q 025858 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWS 184 (247)
Q Consensus 105 ~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 184 (247)
-.++|||+||+..+++.+|+.+|..||.|..|.|-.. +.|||||+|++..+|+.|+..|+|+.|+|..|+|....
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 3679999999999999999999999999999999775 67899999999999999999999999999999998876
Q ss_pred cCcc
Q 025858 185 PVNQ 188 (247)
Q Consensus 185 ~~~~ 188 (247)
....
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 6544
No 61
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.56 E-value=2.8e-14 Score=115.90 Aligned_cols=76 Identities=14% Similarity=0.213 Sum_probs=70.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEEeeecCC
Q 025858 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPK 96 (247)
Q Consensus 18 ~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v~~~~~~ 96 (247)
.++|||+|||+++||++|+++|+.||.|.++.++.++. ++|||||+|.+.++|..|+. ++..|.|+.|.|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 57999999999999999999999999999999998863 57999999999999999999 899999999999998643
No 62
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=2.6e-14 Score=116.03 Aligned_cols=83 Identities=24% Similarity=0.490 Sum_probs=77.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEE
Q 025858 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVE 89 (247)
Q Consensus 12 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~ 89 (247)
..-..+-+||||+-|+++++|.+|+..|+.||+|..|.|+.|+.||+++|||||+|+++.+...|.+ .+..|+|+.|.
T Consensus 95 ~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~ 174 (335)
T KOG0113|consen 95 NAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRIL 174 (335)
T ss_pred cccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEE
Confidence 3344788999999999999999999999999999999999999999999999999999999999998 78899999999
Q ss_pred Eeeec
Q 025858 90 IKRTI 94 (247)
Q Consensus 90 v~~~~ 94 (247)
|.+-.
T Consensus 175 VDvER 179 (335)
T KOG0113|consen 175 VDVER 179 (335)
T ss_pred EEecc
Confidence 97754
No 63
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=6.4e-16 Score=117.01 Aligned_cols=101 Identities=22% Similarity=0.460 Sum_probs=84.2
Q ss_pred ccCCeEEEEeeecCCCCCCCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHH
Q 025858 82 IINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVV 161 (247)
Q Consensus 82 ~l~g~~i~v~~~~~~~~~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a 161 (247)
.|+.+.+....+..... ..+-.++.=|||++||.++||.||.-+|++||+|+.|.+++|+.||+++||||+.|++..+.
T Consensus 12 ~lne~Elq~g~~~~~SW-H~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRST 90 (219)
T KOG0126|consen 12 KLNERELQLGIADKKSW-HQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRST 90 (219)
T ss_pred HhhHHhhccccccccch-hhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccce
Confidence 45555555544431111 12234567899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcccCCcEEEEeec
Q 025858 162 DEMLSKGNMIDMAGTQVSLIGW 183 (247)
Q Consensus 162 ~~ai~~l~~~~~~g~~l~v~~a 183 (247)
.-|+..|||..+.||.|+|...
T Consensus 91 ILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 91 ILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred EEEEeccCCceecceeEEeeec
Confidence 9999999999999999999544
No 64
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=1.9e-14 Score=103.02 Aligned_cols=81 Identities=21% Similarity=0.388 Sum_probs=76.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEe
Q 025858 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIK 91 (247)
Q Consensus 14 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~ 91 (247)
....++||||+||+..+||++|-++|+.+|+|..|.+-.|+.+..+=|||||+|-+.++|..|++ ++..|+.+.|++.
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 34678999999999999999999999999999999999999999999999999999999999999 8899999999999
Q ss_pred eec
Q 025858 92 RTI 94 (247)
Q Consensus 92 ~~~ 94 (247)
|-.
T Consensus 112 ~D~ 114 (153)
T KOG0121|consen 112 WDA 114 (153)
T ss_pred ccc
Confidence 854
No 65
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=7.2e-15 Score=114.53 Aligned_cols=86 Identities=27% Similarity=0.468 Sum_probs=81.5
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEee
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIG 182 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 182 (247)
....++|||++|-.+++|.-|...|-+||.|..|.++.|..+++++|||||+|...|+|..||..||+.++.|+.|+|++
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcc
Q 025858 183 WSPVNQ 188 (247)
Q Consensus 183 a~~~~~ 188 (247)
|+|..-
T Consensus 87 AkP~ki 92 (298)
T KOG0111|consen 87 AKPEKI 92 (298)
T ss_pred cCCccc
Confidence 988443
No 66
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.52 E-value=7.7e-15 Score=111.25 Aligned_cols=82 Identities=28% Similarity=0.466 Sum_probs=78.5
Q ss_pred CccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeec
Q 025858 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGW 183 (247)
Q Consensus 104 ~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 183 (247)
....+|||+||+..++++.|.++|-+.|.|+.+.+++|+.+..++||||++|.++|+|+-|++.||...+.|++|+|+.+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 025858 184 SP 185 (247)
Q Consensus 184 ~~ 185 (247)
..
T Consensus 87 s~ 88 (203)
T KOG0131|consen 87 SA 88 (203)
T ss_pred cc
Confidence 83
No 67
>smart00362 RRM_2 RNA recognition motif.
Probab=99.52 E-value=1e-13 Score=91.50 Aligned_cols=72 Identities=35% Similarity=0.674 Sum_probs=67.3
Q ss_pred cEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEe
Q 025858 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLI 181 (247)
Q Consensus 108 ~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 181 (247)
+|+|+|||..+++++|+++|++||.+..+.+..++ +.++|+|||+|.+.++|.+|+..+++..+.|+.++|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998876 6788999999999999999999999999999998873
No 68
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=8.2e-14 Score=113.18 Aligned_cols=87 Identities=22% Similarity=0.398 Sum_probs=80.0
Q ss_pred CCCCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcE
Q 025858 98 SGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQ 177 (247)
Q Consensus 98 ~~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~ 177 (247)
.......+-+||||+.|+.+++|..|+..|+.||.|+.|.|+.|+.||+++|||||+|+++.+...|-+..+|..|.|+.
T Consensus 93 dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrr 172 (335)
T KOG0113|consen 93 DPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRR 172 (335)
T ss_pred CCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcE
Confidence 33344567889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecc
Q 025858 178 VSLIGWS 184 (247)
Q Consensus 178 l~v~~a~ 184 (247)
|.|..-.
T Consensus 173 i~VDvER 179 (335)
T KOG0113|consen 173 ILVDVER 179 (335)
T ss_pred EEEEecc
Confidence 9986543
No 69
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=3.2e-14 Score=102.80 Aligned_cols=87 Identities=18% Similarity=0.337 Sum_probs=80.8
Q ss_pred CCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEe
Q 025858 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLI 181 (247)
Q Consensus 102 ~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 181 (247)
.......|||.++..+.||++|.+.|..||+|+.+.+-.|+.||-.+|||+|+|++.++|+.|+..+||..+.|..|.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCcc
Q 025858 182 GWSPVNQ 188 (247)
Q Consensus 182 ~a~~~~~ 188 (247)
|+-.+.+
T Consensus 148 w~Fv~gp 154 (170)
T KOG0130|consen 148 WCFVKGP 154 (170)
T ss_pred EEEecCC
Confidence 9855433
No 70
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.51 E-value=2.4e-14 Score=119.83 Aligned_cols=167 Identities=16% Similarity=0.263 Sum_probs=129.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcc---C-CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEEe
Q 025858 17 SPGKIFIGGLPKDTTYATFNKHFGK---Y-GDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIK 91 (247)
Q Consensus 17 ~~~~l~v~nLp~~~te~~l~~~f~~---~-G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v~ 91 (247)
..-.|.+++||+++|+.++.++|.. . |..+.|.++..+ .|+..|-|||.|..+++|+.|+. +...|+.|.|.+.
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElF 238 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELF 238 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3556889999999999999999963 2 345567677665 78999999999999999999998 5556666666554
Q ss_pred eecCCC----------------------C-----CCCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEE---EEEEec
Q 025858 92 RTIPKG----------------------S-----GQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLE---HQIIRD 141 (247)
Q Consensus 92 ~~~~~~----------------------~-----~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~---v~i~~~ 141 (247)
.+.... . .........+|.+++||++.+.++|.++|..|..-+. |.+..+
T Consensus 239 RSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N 318 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN 318 (508)
T ss_pred HHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc
Confidence 332110 0 0112233668999999999999999999999975332 555555
Q ss_pred CCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeeccc
Q 025858 142 HETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWSP 185 (247)
Q Consensus 142 ~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 185 (247)
..|++.|-|||+|.+.++|..|....|++...++-|.|-.+..
T Consensus 319 -~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ 361 (508)
T KOG1365|consen 319 -GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSV 361 (508)
T ss_pred -CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccH
Confidence 5599999999999999999999998888888899999977654
No 71
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.51 E-value=2.8e-14 Score=110.31 Aligned_cols=81 Identities=27% Similarity=0.389 Sum_probs=77.0
Q ss_pred CccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeec
Q 025858 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGW 183 (247)
Q Consensus 104 ~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 183 (247)
....+|.|.||-..++.++|+.+|++||.|-+|.|++|..|+.++|||||.|-...+|+.|+++|+|..++|+.|.|+.|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999776
Q ss_pred c
Q 025858 184 S 184 (247)
Q Consensus 184 ~ 184 (247)
.
T Consensus 91 r 91 (256)
T KOG4207|consen 91 R 91 (256)
T ss_pred h
Confidence 5
No 72
>smart00360 RRM RNA recognition motif.
Probab=99.51 E-value=1.2e-13 Score=90.81 Aligned_cols=71 Identities=38% Similarity=0.725 Sum_probs=66.8
Q ss_pred EcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEe
Q 025858 111 VGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLI 181 (247)
Q Consensus 111 v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 181 (247)
|+|||..+++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|..|+..+++..+.|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57899999999999999999999999999988788999999999999999999999999999999998873
No 73
>PLN03213 repressor of silencing 3; Provisional
Probab=99.50 E-value=7.6e-14 Score=120.34 Aligned_cols=79 Identities=24% Similarity=0.365 Sum_probs=72.3
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCH--HHHHHHHHcCCCcccCCcEEEE
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSE--EVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~--~~a~~ai~~l~~~~~~g~~l~v 180 (247)
.....+||||||++.+++++|+..|++||.|.+|.|++ .+| ||||||+|.+. +++.+||..|||..+.|+.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 34567899999999999999999999999999999994 466 99999999987 7899999999999999999999
Q ss_pred eeccc
Q 025858 181 IGWSP 185 (247)
Q Consensus 181 ~~a~~ 185 (247)
..|++
T Consensus 83 NKAKP 87 (759)
T PLN03213 83 EKAKE 87 (759)
T ss_pred eeccH
Confidence 99876
No 74
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.49 E-value=2e-13 Score=109.25 Aligned_cols=77 Identities=17% Similarity=0.308 Sum_probs=70.6
Q ss_pred ccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeecc
Q 025858 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWS 184 (247)
Q Consensus 105 ~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 184 (247)
...+|+|+||++.+|+++|+++|+.||+|.+|+|+++ ++.+++|||+|.++++|+.|+. |+|..|.++.|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 4578999999999999999999999999999999998 4456899999999999999996 89999999999997765
Q ss_pred c
Q 025858 185 P 185 (247)
Q Consensus 185 ~ 185 (247)
.
T Consensus 80 ~ 80 (243)
T PLN03121 80 Q 80 (243)
T ss_pred c
Confidence 4
No 75
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=7.2e-14 Score=100.11 Aligned_cols=81 Identities=19% Similarity=0.248 Sum_probs=76.7
Q ss_pred CccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeec
Q 025858 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGW 183 (247)
Q Consensus 104 ~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 183 (247)
..+++|||+||+..++|++|.++|++.|+|..|.+=.|+.+..+=|||||+|.+.++|..|++-++|+.+..+.|++.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 35789999999999999999999999999999999999988889999999999999999999999999999999999875
Q ss_pred c
Q 025858 184 S 184 (247)
Q Consensus 184 ~ 184 (247)
.
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 4
No 76
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.48 E-value=1.3e-12 Score=111.17 Aligned_cols=70 Identities=23% Similarity=0.347 Sum_probs=65.2
Q ss_pred cEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEee
Q 025858 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIG 182 (247)
Q Consensus 108 ~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 182 (247)
+|+|+|||.++||+.|++-|..+|.|....|+.. |+++| .|.|.++++|++|+..|+|..+.|+.|+|.+
T Consensus 538 qIiirNlP~dfTWqmlrDKfre~G~v~yadime~---GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 538 QIIIRNLPFDFTWQMLRDKFREIGHVLYADIMEN---GKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred EEEEecCCccccHHHHHHHHHhccceehhhhhcc---CCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 7999999999999999999999999999998544 77776 8999999999999999999999999999976
No 77
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=8.8e-15 Score=110.87 Aligned_cols=86 Identities=26% Similarity=0.508 Sum_probs=78.6
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeE
Q 025858 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQ 87 (247)
Q Consensus 10 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~ 87 (247)
+...+-..+.-|||+|||+..||.||.-+|++||+|++|.+++|+.||+++||||+.|+++.+...|+. ++..|.||.
T Consensus 27 SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRt 106 (219)
T KOG0126|consen 27 SWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRT 106 (219)
T ss_pred chhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceeccee
Confidence 445566678899999999999999999999999999999999999999999999999999999999998 777999999
Q ss_pred EEEeeecC
Q 025858 88 VEIKRTIP 95 (247)
Q Consensus 88 i~v~~~~~ 95 (247)
|+|..-..
T Consensus 107 irVDHv~~ 114 (219)
T KOG0126|consen 107 IRVDHVSN 114 (219)
T ss_pred EEeeeccc
Confidence 99986543
No 78
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.47 E-value=2.7e-13 Score=108.51 Aligned_cols=75 Identities=16% Similarity=0.188 Sum_probs=68.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEEeeec
Q 025858 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTI 94 (247)
Q Consensus 17 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v~~~~ 94 (247)
...+|||+||++.+||++|+++|+.||+|.+|++++|. ..+++|||+|+++++|..|+. ++..|.++.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 34799999999999999999999999999999999884 556899999999999999999 9999999999998754
No 79
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=2.4e-13 Score=111.81 Aligned_cols=86 Identities=19% Similarity=0.491 Sum_probs=76.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEE
Q 025858 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVE 89 (247)
Q Consensus 12 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~ 89 (247)
.+.....++|+|.|||+...|-||+.+|++||+|.+|.|+.+. .-+|||+||+|++.+||++|.+ ++..+.||+|.
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence 3444567899999999999999999999999999999999874 6789999999999999999998 67799999999
Q ss_pred EeeecCCCCC
Q 025858 90 IKRTIPKGSG 99 (247)
Q Consensus 90 v~~~~~~~~~ 99 (247)
|+.+.+.-..
T Consensus 168 Vn~ATarV~n 177 (376)
T KOG0125|consen 168 VNNATARVHN 177 (376)
T ss_pred Eeccchhhcc
Confidence 9999876443
No 80
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=6e-13 Score=113.51 Aligned_cols=115 Identities=25% Similarity=0.372 Sum_probs=89.2
Q ss_pred EecCHHHHHHHHhccCccCCeEEEEeeecCC------CCCCCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEE
Q 025858 66 TYADPSVVDKVIEDTHIINGKQVEIKRTIPK------GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQII 139 (247)
Q Consensus 66 ~f~~~~~a~~a~~~~~~l~g~~i~v~~~~~~------~~~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~ 139 (247)
...+.++|.++|.. --|..|.+.-...+ ..........+.|||+.||.++.|++|..+|++.|+|-+++||
T Consensus 40 ~~~~~eaal~al~E---~tgy~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLM 116 (506)
T KOG0117|consen 40 GVQSEEAALKALLE---RTGYTLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLM 116 (506)
T ss_pred ccccHHHHHHHHHH---hcCceEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEe
Confidence 33446777777751 12344444433211 1122233567889999999999999999999999999999999
Q ss_pred ecCCCCCceeEEEEEEcCHHHHHHHHHcCCCccc-CCcEEEEeec
Q 025858 140 RDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDM-AGTQVSLIGW 183 (247)
Q Consensus 140 ~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~-~g~~l~v~~a 183 (247)
.|+.+|.+||||||.|.+.++|+.||+.||+.+| .|+.|.|...
T Consensus 117 mD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 117 MDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred ecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence 9999999999999999999999999999999987 4777777544
No 81
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=3e-13 Score=102.10 Aligned_cols=77 Identities=22% Similarity=0.550 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeeec
Q 025858 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTI 94 (247)
Q Consensus 17 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~~ 94 (247)
-.+.|||+||+.++++.||..+|..||++.+|+|-.. ..|||||+|++..||+.|+. ++..|.|..|+|+.+.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 4688999999999999999999999999999999775 47999999999999999999 8999999999999987
Q ss_pred CCCC
Q 025858 95 PKGS 98 (247)
Q Consensus 95 ~~~~ 98 (247)
-...
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 6544
No 82
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=7.7e-13 Score=91.39 Aligned_cols=85 Identities=21% Similarity=0.303 Sum_probs=73.3
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCe
Q 025858 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGK 86 (247)
Q Consensus 9 ~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~ 86 (247)
+...-+++-.+.|||+|||+++|.+++.++|.+||.|..|++-..+ ..+|.|||.|++..+|.+|+. ++..+.++
T Consensus 9 ~~~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~r 85 (124)
T KOG0114|consen 9 QNIRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNR 85 (124)
T ss_pred CCCCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCc
Confidence 3444556678899999999999999999999999999999997654 568999999999999999999 77889999
Q ss_pred EEEEeeecCC
Q 025858 87 QVEIKRTIPK 96 (247)
Q Consensus 87 ~i~v~~~~~~ 96 (247)
.+.|.+-.+.
T Consensus 86 yl~vlyyq~~ 95 (124)
T KOG0114|consen 86 YLVVLYYQPE 95 (124)
T ss_pred eEEEEecCHH
Confidence 9988775543
No 83
>smart00362 RRM_2 RNA recognition motif.
Probab=99.44 E-value=8e-13 Score=87.14 Aligned_cols=69 Identities=30% Similarity=0.666 Sum_probs=63.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEE
Q 025858 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEI 90 (247)
Q Consensus 20 ~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v 90 (247)
+|+|+|||.++++++|+++|++||.+..+.+..++ +.++|+|||+|.+.++|.+|++ ++..+.|+.+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999998876 7789999999999999999998 667888988876
No 84
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.44 E-value=1.5e-12 Score=86.32 Aligned_cols=74 Identities=38% Similarity=0.710 Sum_probs=68.6
Q ss_pred cEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEee
Q 025858 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIG 182 (247)
Q Consensus 108 ~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 182 (247)
+|+|++||..+++++|+++|+.+|.|..+.+..++.+ .++|+|||+|.+.++|..|+..+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987654 6789999999999999999999999999999998864
No 85
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.43 E-value=6.9e-13 Score=112.00 Aligned_cols=160 Identities=15% Similarity=0.166 Sum_probs=123.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh----ccCccCCeEE
Q 025858 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE----DTHIINGKQV 88 (247)
Q Consensus 13 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~----~~~~l~g~~i 88 (247)
....+++.|.++|||.+++|++|.+++..||.|+.+.+.+-++ .||++|.|.+.|...+. -...+.|++|
T Consensus 23 ~~~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~ 96 (492)
T KOG1190|consen 23 SMAEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPI 96 (492)
T ss_pred cccCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcce
Confidence 4455899999999999999999999999999999998876542 69999999999988554 2336788888
Q ss_pred EEeeecCCCCC---------------------------CC-CC--------CccccEEEcCCCCCCCHHHHHHHHHhcCC
Q 025858 89 EIKRTIPKGSG---------------------------QS-KD--------FKTKKIFVGGIPSSVSEDELKNFFSKYGK 132 (247)
Q Consensus 89 ~v~~~~~~~~~---------------------------~~-~~--------~~~~~l~v~~l~~~~t~~~l~~~f~~~G~ 132 (247)
.|.++...... .. .. ..--.+.|.++-..++-+-|.++|++||.
T Consensus 97 yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~ 176 (492)
T KOG1190|consen 97 YIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGF 176 (492)
T ss_pred eehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcce
Confidence 88775322100 00 00 01125778999999999999999999999
Q ss_pred eEEEEEEecCCCCCcee-EEEEEEcCHHHHHHHHHcCCCcccCCcE--EEEeec
Q 025858 133 VLEHQIIRDHETNRSRG-FGFVIFDSEEVVDEMLSKGNMIDMAGTQ--VSLIGW 183 (247)
Q Consensus 133 i~~v~i~~~~~~~~~~g-~afV~f~~~~~a~~ai~~l~~~~~~g~~--l~v~~a 183 (247)
|.++.-+.. ..| .|+|+|.+.+.|..|...|+|..|...+ |++.+.
T Consensus 177 VlKIiTF~K-----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~S 225 (492)
T KOG1190|consen 177 VLKIITFTK-----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFS 225 (492)
T ss_pred eEEEEEEec-----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehh
Confidence 998866543 223 4899999999999999999999876654 444443
No 86
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.43 E-value=3.8e-13 Score=117.71 Aligned_cols=82 Identities=32% Similarity=0.533 Sum_probs=79.2
Q ss_pred ccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeecccC
Q 025858 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWSPV 186 (247)
Q Consensus 107 ~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~ 186 (247)
+++||||+|+++++++|.++|+..|.|.++++..|+.||+++||||++|.+.++|.+|++.|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred cc
Q 025858 187 NQ 188 (247)
Q Consensus 187 ~~ 188 (247)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 54
No 87
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.42 E-value=4.7e-12 Score=105.90 Aligned_cols=167 Identities=16% Similarity=0.201 Sum_probs=130.8
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh----ccCccCC
Q 025858 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE----DTHIING 85 (247)
Q Consensus 10 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~----~~~~l~g 85 (247)
.++....++..|.|++|-..++|.||.+.++.||.|..+..+..+ ..|.|+|+|.+.|+.++. +...+.|
T Consensus 23 ~dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i~g 96 (494)
T KOG1456|consen 23 ADPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYIAG 96 (494)
T ss_pred CCCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcccccC
Confidence 345556678899999999999999999999999999887776543 579999999999999987 4557888
Q ss_pred eEEEEeeecCCCCCCCC---CCccccEE--EcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHH
Q 025858 86 KQVEIKRTIPKGSGQSK---DFKTKKIF--VGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEV 160 (247)
Q Consensus 86 ~~i~v~~~~~~~~~~~~---~~~~~~l~--v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 160 (247)
+.--+.++..+...... ...+..|. |-|--+.+|.+-|..++...|+|.+|.|++.. | =.|.|+|++.+.
T Consensus 97 q~Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn--g---VQAmVEFdsv~~ 171 (494)
T KOG1456|consen 97 QQALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN--G---VQAMVEFDSVEV 171 (494)
T ss_pred chhhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEecc--c---eeeEEeechhHH
Confidence 88888877544332211 12222333 44555689999999999999999999998752 2 259999999999
Q ss_pred HHHHHHcCCCcccCCc--EEEEeecccCc
Q 025858 161 VDEMLSKGNMIDMAGT--QVSLIGWSPVN 187 (247)
Q Consensus 161 a~~ai~~l~~~~~~g~--~l~v~~a~~~~ 187 (247)
|++|...|||-.|... .|+|.+|+|..
T Consensus 172 AqrAk~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 172 AQRAKAALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred HHHHHhhcccccccccceeEEEEecCcce
Confidence 9999999999887654 48888888743
No 88
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.42 E-value=2.9e-13 Score=104.67 Aligned_cols=83 Identities=25% Similarity=0.513 Sum_probs=78.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEE
Q 025858 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVE 89 (247)
Q Consensus 12 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~ 89 (247)
+.|.+.-.+|.|-||-+.+|.++|+.+|++||.|-+|.|.+|+.|+.++|||||.|.+..+|+.|++ ++..|+|+.|+
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 5677788899999999999999999999999999999999999999999999999999999999999 88899999999
Q ss_pred Eeeec
Q 025858 90 IKRTI 94 (247)
Q Consensus 90 v~~~~ 94 (247)
|+.+.
T Consensus 87 Vq~ar 91 (256)
T KOG4207|consen 87 VQMAR 91 (256)
T ss_pred ehhhh
Confidence 98764
No 89
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=6.4e-13 Score=96.09 Aligned_cols=88 Identities=22% Similarity=0.417 Sum_probs=79.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEE
Q 025858 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVE 89 (247)
Q Consensus 12 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~ 89 (247)
+..+..--.|||.++...+||++|.+.|..||+|.++.+-.|+.||..+|||+|+|++.+.|+.|+. |+..|.|.+|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 3334444579999999999999999999999999999999999999999999999999999999998 78899999999
Q ss_pred EeeecCCCCC
Q 025858 90 IKRTIPKGSG 99 (247)
Q Consensus 90 v~~~~~~~~~ 99 (247)
|.|..-.++.
T Consensus 146 VDw~Fv~gp~ 155 (170)
T KOG0130|consen 146 VDWCFVKGPE 155 (170)
T ss_pred EEEEEecCCc
Confidence 9999876653
No 90
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.41 E-value=1.2e-12 Score=108.63 Aligned_cols=79 Identities=34% Similarity=0.669 Sum_probs=76.6
Q ss_pred cccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeecc
Q 025858 106 TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWS 184 (247)
Q Consensus 106 ~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 184 (247)
..+|||+|||..+++++|+++|.+||.+..+.+..++.++.++|+|||+|.+.++|..|+..+++..+.|+.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 5899999999999999999999999999999999998899999999999999999999999999999999999999965
No 91
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=2.2e-12 Score=89.17 Aligned_cols=80 Identities=15% Similarity=0.365 Sum_probs=71.8
Q ss_pred CccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeec
Q 025858 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGW 183 (247)
Q Consensus 104 ~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 183 (247)
...+.|||.|||.++|.++..++|.+||.|..+++=-. ...+|-|||.|++..+|.+|+..|+|..+.++.+.|-+.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT---KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc---cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 34678999999999999999999999999999998444 346899999999999999999999999999999999876
Q ss_pred ccC
Q 025858 184 SPV 186 (247)
Q Consensus 184 ~~~ 186 (247)
.+.
T Consensus 93 q~~ 95 (124)
T KOG0114|consen 93 QPE 95 (124)
T ss_pred CHH
Confidence 553
No 92
>smart00361 RRM_1 RNA recognition motif.
Probab=99.40 E-value=1.5e-12 Score=86.57 Aligned_cols=61 Identities=23% Similarity=0.330 Sum_probs=55.4
Q ss_pred HHHHHHHHH----hcCCeEEEE-EEecCCC--CCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 120 EDELKNFFS----KYGKVLEHQ-IIRDHET--NRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 120 ~~~l~~~f~----~~G~i~~v~-i~~~~~~--~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
+++|+++|+ +||.|.++. +..++.+ +.++|+|||+|.+.++|.+|+..|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999995 7777666 889999999999999999999999999999999986
No 93
>smart00360 RRM RNA recognition motif.
Probab=99.40 E-value=1.8e-12 Score=85.13 Aligned_cols=68 Identities=26% Similarity=0.662 Sum_probs=62.6
Q ss_pred EcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEE
Q 025858 23 IGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEI 90 (247)
Q Consensus 23 v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v 90 (247)
|+|||..+++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|..|++ ++..++|+.+.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 57999999999999999999999999999988778999999999999999999998 556888888876
No 94
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=1.5e-12 Score=114.74 Aligned_cols=172 Identities=19% Similarity=0.380 Sum_probs=139.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccC-----------C-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-c
Q 025858 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKY-----------G-DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-D 79 (247)
Q Consensus 13 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~-----------G-~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~ 79 (247)
.-..+.+.++|+++|+.++|+.+..+|..- | .+..+.+- ..+.+||++|.+.++|..|+. .
T Consensus 170 ~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n------~~~nfa~ie~~s~~~at~~~~~~ 243 (500)
T KOG0120|consen 170 QATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN------LEKNFAFIEFRSISEATEAMALD 243 (500)
T ss_pred chhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec------ccccceeEEecCCCchhhhhccc
Confidence 344567789999999999999999999753 3 24444443 345799999999999999998 7
Q ss_pred cCccCCeEEEEeeecCCCCC-------------------CCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEe
Q 025858 80 THIINGKQVEIKRTIPKGSG-------------------QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIR 140 (247)
Q Consensus 80 ~~~l~g~~i~v~~~~~~~~~-------------------~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~ 140 (247)
+..+.|..+.+......... ........+++|++||..+++.+++++...||.+....+..
T Consensus 244 ~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~ 323 (500)
T KOG0120|consen 244 GIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVK 323 (500)
T ss_pred chhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeec
Confidence 77788888776543222111 01112345799999999999999999999999999999999
Q ss_pred cCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeecccCcccc
Q 025858 141 DHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWSPVNQLL 190 (247)
Q Consensus 141 ~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~~~~~ 190 (247)
+..+|.++||||.+|.+......|++.|||..+.++++.|..|-......
T Consensus 324 d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~ 373 (500)
T KOG0120|consen 324 DSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNA 373 (500)
T ss_pred ccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhc
Confidence 99999999999999999999999999999999999999998887654443
No 95
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.38 E-value=1.6e-12 Score=113.88 Aligned_cols=80 Identities=23% Similarity=0.537 Sum_probs=75.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeeecCC
Q 025858 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIPK 96 (247)
Q Consensus 19 ~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~~~~ 96 (247)
+.|||||+|++++|++|.++|+..|.|.+++++.|+.+|+++||||++|.+.++|..|++ ++.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999999999999999999999999999999999 788999999999998654
Q ss_pred CC
Q 025858 97 GS 98 (247)
Q Consensus 97 ~~ 98 (247)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 96
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=2.5e-11 Score=105.61 Aligned_cols=172 Identities=24% Similarity=0.427 Sum_probs=122.5
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCC---CCCcce---EEEEEecCHHHHHHHHh-----
Q 025858 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRY---TGQPRG---FGFITYADPSVVDKVIE----- 78 (247)
Q Consensus 10 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~---~~~~~g---~afV~f~~~~~a~~a~~----- 78 (247)
.......-++.|||++||.+++|+.|...|..||.+. +....... .-..+| |+|+.|+++..+..-+.
T Consensus 251 ~~~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~ 329 (520)
T KOG0129|consen 251 RGYRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEG 329 (520)
T ss_pred CCCCccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhc
Confidence 3445556788999999999999999999999999864 44432111 123466 99999999999887665
Q ss_pred ccC--------ccCCeEEEEeeecCCCC-----CCCCCCccccEEEcCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCC
Q 025858 79 DTH--------IINGKQVEIKRTIPKGS-----GQSKDFKTKKIFVGGIPSSVSEDELKNFFS-KYGKVLEHQIIRDHET 144 (247)
Q Consensus 79 ~~~--------~l~g~~i~v~~~~~~~~-----~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~ 144 (247)
... .+..+.|.|..=..... ....-.+.+|||||+||.-++.++|-.+|+ -||.|..+-|=+|++-
T Consensus 330 ~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~ 409 (520)
T KOG0129|consen 330 EGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKL 409 (520)
T ss_pred ccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCccc
Confidence 111 22223233321111110 122334678999999999999999999999 6999999999888777
Q ss_pred CCceeEEEEEEcCHHHHHHHHHc----CCCcccCCcEEEEeec
Q 025858 145 NRSRGFGFVIFDSEEVVDEMLSK----GNMIDMAGTQVSLIGW 183 (247)
Q Consensus 145 ~~~~g~afV~f~~~~~a~~ai~~----l~~~~~~g~~l~v~~a 183 (247)
+-++|-|-|+|.+..+-.+||.. |+...+. ++|+|+.-
T Consensus 410 KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~-KRVEIkPY 451 (520)
T KOG0129|consen 410 KYPKGAGRVTFSNQQAYIKAISARFVQLDHTDID-KRVEIKPY 451 (520)
T ss_pred CCCCCcceeeecccHHHHHHHhhheEEEeccccc-eeeeecce
Confidence 88999999999999999999985 3333332 35666443
No 97
>PLN03213 repressor of silencing 3; Provisional
Probab=99.36 E-value=3e-12 Score=110.64 Aligned_cols=78 Identities=17% Similarity=0.438 Sum_probs=69.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCH--HHHHHHHh--ccCccCCeEEEE
Q 025858 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADP--SVVDKVIE--DTHIINGKQVEI 90 (247)
Q Consensus 15 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~--~~a~~a~~--~~~~l~g~~i~v 90 (247)
....-+||||||++++|+++|+..|..||.|.++.|++. +| ||||||+|.+. +++.+|+. ++..+.|+.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 345678999999999999999999999999999999955 56 99999999987 67899998 889999999999
Q ss_pred eeecCC
Q 025858 91 KRTIPK 96 (247)
Q Consensus 91 ~~~~~~ 96 (247)
..+.+.
T Consensus 83 NKAKP~ 88 (759)
T PLN03213 83 EKAKEH 88 (759)
T ss_pred eeccHH
Confidence 987653
No 98
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.35 E-value=2.6e-12 Score=81.43 Aligned_cols=56 Identities=30% Similarity=0.459 Sum_probs=50.6
Q ss_pred HHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeec
Q 025858 123 LKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGW 183 (247)
Q Consensus 123 l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 183 (247)
|+++|++||+|.++.+.... +++|||+|.+.++|..|++.|||..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997653 579999999999999999999999999999999885
No 99
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=2.6e-12 Score=97.89 Aligned_cols=80 Identities=21% Similarity=0.424 Sum_probs=71.9
Q ss_pred CccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeec
Q 025858 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGW 183 (247)
Q Consensus 104 ~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 183 (247)
...++|||+|||.++.+.+|+++|.+||.|..|.+... ..+..||||+|++..+|+.||..-+|..+.|..|+|.++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 35789999999999999999999999999999998544 335679999999999999999999999999999999987
Q ss_pred ccC
Q 025858 184 SPV 186 (247)
Q Consensus 184 ~~~ 186 (247)
..-
T Consensus 81 rgg 83 (241)
T KOG0105|consen 81 RGG 83 (241)
T ss_pred cCC
Confidence 653
No 100
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.34 E-value=1.2e-11 Score=81.84 Aligned_cols=72 Identities=26% Similarity=0.640 Sum_probs=64.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEee
Q 025858 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKR 92 (247)
Q Consensus 20 ~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~ 92 (247)
+|+|+|||..+++++|+++|+.+|.|..+.+..++.+ ..+|+|||+|.+.++|..|++ ++..++|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999999988744 778999999999999999998 55678999888753
No 101
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=1.7e-12 Score=104.18 Aligned_cols=100 Identities=19% Similarity=0.360 Sum_probs=83.6
Q ss_pred CeEEEEeeecCCCCCCCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHH
Q 025858 85 GKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEM 164 (247)
Q Consensus 85 g~~i~v~~~~~~~~~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a 164 (247)
+|.|.|+.+.... ...+.++|||+.|.+.-.|+|++.+|+.||.|++|.+.+... |.+||||||+|.+..+|..|
T Consensus 2 nrpiqvkpadses----rg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaA 76 (371)
T KOG0146|consen 2 NRPIQVKPADSES----RGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAA 76 (371)
T ss_pred CCCcccccccccc----CCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHH
Confidence 4667777665432 233678999999999999999999999999999999999854 89999999999999999999
Q ss_pred HHcCCCcc-cC--CcEEEEeecccCccc
Q 025858 165 LSKGNMID-MA--GTQVSLIGWSPVNQL 189 (247)
Q Consensus 165 i~~l~~~~-~~--g~~l~v~~a~~~~~~ 189 (247)
|..|||.. +- ...|.|++++...++
T Consensus 77 I~aLHgSqTmpGASSSLVVK~ADTdkER 104 (371)
T KOG0146|consen 77 INALHGSQTMPGASSSLVVKFADTDKER 104 (371)
T ss_pred HHHhcccccCCCCccceEEEeccchHHH
Confidence 99999976 33 356999999875544
No 102
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.5e-12 Score=101.65 Aligned_cols=84 Identities=23% Similarity=0.474 Sum_probs=77.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeee
Q 025858 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRT 93 (247)
Q Consensus 16 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~ 93 (247)
...++|||++|..++||.-|...|-.||+|.+|.+..|-.+.+.+|||||+|...|||..|+. +..+|.||.|+|+++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 457899999999999999999999999999999999999899999999999999999999999 556999999999999
Q ss_pred cCCCCC
Q 025858 94 IPKGSG 99 (247)
Q Consensus 94 ~~~~~~ 99 (247)
.|....
T Consensus 88 kP~kik 93 (298)
T KOG0111|consen 88 KPEKIK 93 (298)
T ss_pred CCcccc
Confidence 886553
No 103
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.30 E-value=4.4e-12 Score=102.92 Aligned_cols=74 Identities=26% Similarity=0.617 Sum_probs=69.4
Q ss_pred ccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeecccC
Q 025858 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWSPV 186 (247)
Q Consensus 107 ~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~ 186 (247)
.+|||+|||.++++.+|+.+|++||+|.+|.|+++ ||||..++...|..||..|||..|.|..|+|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 37999999999999999999999999999999876 9999999999999999999999999999999988877
Q ss_pred cc
Q 025858 187 NQ 188 (247)
Q Consensus 187 ~~ 188 (247)
..
T Consensus 75 sk 76 (346)
T KOG0109|consen 75 SK 76 (346)
T ss_pred CC
Confidence 33
No 104
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.27 E-value=3.9e-10 Score=94.60 Aligned_cols=159 Identities=16% Similarity=0.235 Sum_probs=127.3
Q ss_pred CCCCCCCCCeEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeE
Q 025858 11 HTGDGASPGKIFIGGLPKD-TTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQ 87 (247)
Q Consensus 11 ~~~~~~~~~~l~v~nLp~~-~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~ 87 (247)
.+....+.+.++|.+|... ++-+.|.++|-.||.|..|++++.+ .|-|.|++.|..+.++|+. ++..+.|.+
T Consensus 280 ~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~k 354 (494)
T KOG1456|consen 280 SPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGK 354 (494)
T ss_pred CCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccce
Confidence 3355667889999999665 7888999999999999999999876 4689999999999999999 777889999
Q ss_pred EEEeeecCCCCC---------------------------------CCCCCccccEEEcCCCCCCCHHHHHHHHHhcCC-e
Q 025858 88 VEIKRTIPKGSG---------------------------------QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGK-V 133 (247)
Q Consensus 88 i~v~~~~~~~~~---------------------------------~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~-i 133 (247)
|.|..+...... ..-..+++.|+.-|.|..+||+.|.++|...+. .
T Consensus 355 l~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~ 434 (494)
T KOG1456|consen 355 LNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPP 434 (494)
T ss_pred EEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCc
Confidence 998876432110 111235668999999999999999999988753 4
Q ss_pred EEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCc
Q 025858 134 LEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGT 176 (247)
Q Consensus 134 ~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~ 176 (247)
.+++++..+. . ...-+.++|++.++|-.||..+|...+.+.
T Consensus 435 ~svkvFp~ks-e-rSssGllEfe~~s~Aveal~~~NH~pi~~p 475 (494)
T KOG1456|consen 435 TSVKVFPLKS-E-RSSSGLLEFENKSDAVEALMKLNHYPIEGP 475 (494)
T ss_pred ceEEeecccc-c-ccccceeeeehHHHHHHHHHHhccccccCC
Confidence 5677766542 2 233689999999999999999999888765
No 105
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.24 E-value=1.5e-11 Score=98.07 Aligned_cols=168 Identities=18% Similarity=0.245 Sum_probs=133.5
Q ss_pred CCCeEEEcCCCCCCCHHH-H--HHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEe
Q 025858 17 SPGKIFIGGLPKDTTYAT-F--NKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIK 91 (247)
Q Consensus 17 ~~~~l~v~nLp~~~te~~-l--~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~ 91 (247)
..-..++.++-..+..+- | ...|+.+-.+...+++++. -+.-++.+|+.|+..+.-.++.. +++.+.-..|++.
T Consensus 95 ~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a 173 (290)
T KOG0226|consen 95 AVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLA 173 (290)
T ss_pred ccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeec
Confidence 344567777777777665 3 5677777777777788776 56778899999998888777776 5566666666665
Q ss_pred eecCCCC--CCCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCC
Q 025858 92 RTIPKGS--GQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN 169 (247)
Q Consensus 92 ~~~~~~~--~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~ 169 (247)
....... ...-..+..+||++.|..+++++.|-+.|.+|-.-..-++++|+.||+++||+||.|.+.+++.+|+..|+
T Consensus 174 ~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~ 253 (290)
T KOG0226|consen 174 AGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMN 253 (290)
T ss_pred cccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhc
Confidence 4433222 22233456789999999999999999999999988889999999999999999999999999999999999
Q ss_pred CcccCCcEEEEeeccc
Q 025858 170 MIDMAGTQVSLIGWSP 185 (247)
Q Consensus 170 ~~~~~g~~l~v~~a~~ 185 (247)
|..++.+.|+++...-
T Consensus 254 gkyVgsrpiklRkS~w 269 (290)
T KOG0226|consen 254 GKYVGSRPIKLRKSEW 269 (290)
T ss_pred ccccccchhHhhhhhH
Confidence 9999999998865443
No 106
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=3.8e-12 Score=99.40 Aligned_cols=150 Identities=15% Similarity=0.247 Sum_probs=120.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEee
Q 025858 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKR 92 (247)
Q Consensus 15 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~ 92 (247)
.+..+||||.|+...++|+-|.++|-+-|+|..+.|..++ .+..| ||||+|+++-.+..|++ ++..+.+..+.++.
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 4567899999999999999999999999999999998877 55556 99999999999999998 77788888776654
Q ss_pred ecCCCCCCCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcc
Q 025858 93 TIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMID 172 (247)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~ 172 (247)
-...... -|...++++.+.+.|+.-|.+..+++.++.. |+++.++|+.+.-..+.-.++..-.+..
T Consensus 84 r~G~sha-------------pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 84 RCGNSHA-------------PLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGLE 149 (267)
T ss_pred ccCCCcc-------------hhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhhcccC
Confidence 3221110 1677889999999999999999999988855 8899999999987777777777655555
Q ss_pred cCCcEEEE
Q 025858 173 MAGTQVSL 180 (247)
Q Consensus 173 ~~g~~l~v 180 (247)
..-+++.+
T Consensus 150 ~~~~~~~~ 157 (267)
T KOG4454|consen 150 LFQKKVTI 157 (267)
T ss_pred cCCCCccc
Confidence 44444444
No 107
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.20 E-value=2.3e-10 Score=99.12 Aligned_cols=161 Identities=20% Similarity=0.302 Sum_probs=122.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeE-EEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEEeee
Q 025858 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITD-SVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRT 93 (247)
Q Consensus 16 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~-i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v~~~ 93 (247)
.....|.+++||+.|||+||.++|+-.-.+.. |.++.+. .+++.|-|||+|++.+.|++|+. +...|+-+-|.|..+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 57789999999999999999999998876655 5566665 67799999999999999999998 666787777877543
Q ss_pred cCCC-------------------C----C--------------------------------------------------C
Q 025858 94 IPKG-------------------S----G--------------------------------------------------Q 100 (247)
Q Consensus 94 ~~~~-------------------~----~--------------------------------------------------~ 100 (247)
.... . . .
T Consensus 180 s~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~ 259 (510)
T KOG4211|consen 180 SRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNY 259 (510)
T ss_pred HHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccccccccccccccccc
Confidence 1100 0 0 0
Q ss_pred CC----------------CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHH
Q 025858 101 SK----------------DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEM 164 (247)
Q Consensus 101 ~~----------------~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a 164 (247)
.. ......++.++||...++.++..+|+..-.+ .|.|--. .+|+..|-|.|+|.+.++|..|
T Consensus 260 ~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig-~dGr~TGEAdveF~t~edav~A 337 (510)
T KOG4211|consen 260 PVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIG-PDGRATGEADVEFATGEDAVGA 337 (510)
T ss_pred CCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeC-CCCccCCcceeecccchhhHhh
Confidence 00 0011358899999999999999999987543 4544443 4589999999999999999999
Q ss_pred HHcCCCcccCCcEEEE
Q 025858 165 LSKGNMIDMAGTQVSL 180 (247)
Q Consensus 165 i~~l~~~~~~g~~l~v 180 (247)
+.. ++..+..+-|.+
T Consensus 338 msk-d~anm~hrYVEl 352 (510)
T KOG4211|consen 338 MGK-DGANMGHRYVEL 352 (510)
T ss_pred hcc-CCcccCcceeee
Confidence 985 666677776665
No 108
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.20 E-value=6.8e-11 Score=91.77 Aligned_cols=85 Identities=26% Similarity=0.401 Sum_probs=77.6
Q ss_pred CCCccccEEEcCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKY-GKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 102 ~~~~~~~l~v~~l~~~~t~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
......-++++.+|.-+-+.++...|.++ |.+..+++-+.+.||.++|||||+|++.+.|.-|-..||+..+.++.|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 34456679999999999999999999998 77888888899999999999999999999999999999999999999999
Q ss_pred eecccC
Q 025858 181 IGWSPV 186 (247)
Q Consensus 181 ~~a~~~ 186 (247)
..-.+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 887665
No 109
>smart00361 RRM_1 RNA recognition motif.
Probab=99.19 E-value=1.2e-10 Score=77.34 Aligned_cols=59 Identities=20% Similarity=0.413 Sum_probs=52.5
Q ss_pred HHHHHHHhc----cCCCeeEEE-EeecCCC--CCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEE
Q 025858 32 YATFNKHFG----KYGDITDSV-IMKDRYT--GQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEI 90 (247)
Q Consensus 32 e~~l~~~f~----~~G~i~~i~-~~~~~~~--~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v 90 (247)
+++|+++|+ .||.|.++. ++.++.+ +.++|+|||+|.+.++|.+|++ ++..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678899998 999999995 7777656 8999999999999999999999 788999999875
No 110
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=1.2e-12 Score=119.35 Aligned_cols=149 Identities=17% Similarity=0.270 Sum_probs=126.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEEeeec
Q 025858 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTI 94 (247)
Q Consensus 16 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v~~~~ 94 (247)
+...++||+||++.+.+.+|...|..+|.+..+++....+.++.+|+|+++|...+++.+|+. ....+.|
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g--------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG--------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh---------
Confidence 344579999999999999999999999988888887667789999999999999999999997 2222222
Q ss_pred CCCCCCCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccC
Q 025858 95 PKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMA 174 (247)
Q Consensus 95 ~~~~~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~ 174 (247)
..+++|.|+|...|.++++.++..+|.+.+++++..+ .|+++|.|+|.|.+..++.++........+.
T Consensus 736 -----------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~r 803 (881)
T KOG0128|consen 736 -----------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKR 803 (881)
T ss_pred -----------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhh
Confidence 4578999999999999999999999999999877764 4999999999999999999999887777777
Q ss_pred CcEEEEeeccc
Q 025858 175 GTQVSLIGWSP 185 (247)
Q Consensus 175 g~~l~v~~a~~ 185 (247)
-..+.|....|
T Consensus 804 E~~~~v~vsnp 814 (881)
T KOG0128|consen 804 ENNGEVQVSNP 814 (881)
T ss_pred hcCccccccCC
Confidence 66666655433
No 111
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.16 E-value=1.2e-10 Score=91.67 Aligned_cols=84 Identities=20% Similarity=0.427 Sum_probs=74.8
Q ss_pred ccccEEEcCCCCCCCHHHHHH----HHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 105 KTKKIFVGGIPSSVSEDELKN----FFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 105 ~~~~l~v~~l~~~~t~~~l~~----~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
+..+|||.||+..+..++|++ +|++||.|.+|...+. .+.+|-|||.|.+.+.|..|+..|+|..+.|+.+++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT---PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC---CCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 344999999999999999998 9999999999988654 678999999999999999999999999999999999
Q ss_pred eecccCccccc
Q 025858 181 IGWSPVNQLLK 191 (247)
Q Consensus 181 ~~a~~~~~~~~ 191 (247)
.+|..+.....
T Consensus 85 qyA~s~sdii~ 95 (221)
T KOG4206|consen 85 QYAKSDSDIIA 95 (221)
T ss_pred ecccCccchhh
Confidence 99877655433
No 112
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.14 E-value=2.3e-10 Score=72.40 Aligned_cols=54 Identities=30% Similarity=0.630 Sum_probs=48.0
Q ss_pred HHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeee
Q 025858 35 FNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRT 93 (247)
Q Consensus 35 l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~ 93 (247)
|.++|++||+|.++.+..++ +++|||+|.+.++|..|++ ++..++|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997654 5899999999999999998 888999999999885
No 113
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=2.1e-10 Score=95.30 Aligned_cols=80 Identities=28% Similarity=0.526 Sum_probs=71.6
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh---ccCccCCe
Q 025858 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE---DTHIINGK 86 (247)
Q Consensus 10 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~---~~~~l~g~ 86 (247)
-.+..+....+|||++|-..++|.+|++.|.+||+|.++.++... ++|||+|.+.++|+.|.. +...|+|+
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecce
Confidence 345566788999999998899999999999999999999998654 699999999999999998 55589999
Q ss_pred EEEEeeecC
Q 025858 87 QVEIKRTIP 95 (247)
Q Consensus 87 ~i~v~~~~~ 95 (247)
+|.|.|+.+
T Consensus 294 Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 RLKIKWGRP 302 (377)
T ss_pred EEEEEeCCC
Confidence 999999988
No 114
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=1.7e-10 Score=95.91 Aligned_cols=79 Identities=24% Similarity=0.516 Sum_probs=70.6
Q ss_pred CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHc-CCCcccCCcEEE
Q 025858 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK-GNMIDMAGTQVS 179 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~-l~~~~~~g~~l~ 179 (247)
+++..-.+|||++|...++|.+|+++|.+||+|..+++... +++|||+|.++++|+.|... +|...+.|.+|.
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 45556779999999999999999999999999999999765 55999999999999999775 666779999999
Q ss_pred Eeeccc
Q 025858 180 LIGWSP 185 (247)
Q Consensus 180 v~~a~~ 185 (247)
|.|+.+
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 999988
No 115
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.11 E-value=1.7e-10 Score=97.13 Aligned_cols=153 Identities=36% Similarity=0.493 Sum_probs=109.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEEeeecC
Q 025858 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIP 95 (247)
Q Consensus 17 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v~~~~~ 95 (247)
....|||++||.+++|++++++|++||.|..+.++.|+.+.+++|++||.|.+++++++++. ..+.|+++.+.|+.+.+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccc
Confidence 35689999999999999999999999999999999999999999999999999999999998 78899999999999988
Q ss_pred CCCCCCCCCc-cccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEE-ecCC-C---CCceeEEEEEEcCHHHHHHHHHcCC
Q 025858 96 KGSGQSKDFK-TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQII-RDHE-T---NRSRGFGFVIFDSEEVVDEMLSKGN 169 (247)
Q Consensus 96 ~~~~~~~~~~-~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~-~~~~-~---~~~~g~afV~f~~~~~a~~ai~~l~ 169 (247)
+......... ....+..++....+.-.|...|..|+...-..-- ++.. . ..+.+.+|..|.+......+-..++
T Consensus 176 k~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~ 255 (311)
T KOG4205|consen 176 KEVMQSTKSSVSTRGKGNNLGNGRTGFFLKKYFKGYGPVGMSDYGGRPVGRRYGPLFNGGSGYPEFGNSGLGFGYGNKLN 255 (311)
T ss_pred hhhccccccccccccccccccccccccccchhccccCccccccccccccccccccccCCCccccccCccccccccccccC
Confidence 7664432211 1112222455555566677777777765411000 0000 0 0245677777766555444443333
No 116
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.5e-10 Score=96.52 Aligned_cols=82 Identities=20% Similarity=0.387 Sum_probs=77.4
Q ss_pred CccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeec
Q 025858 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGW 183 (247)
Q Consensus 104 ~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 183 (247)
++.+.|||--|.+-+|+++|.-+|+.||.|.+|.+++|..||.+..||||+|++.+++++|...|++..|..+.|+|.++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999775
Q ss_pred cc
Q 025858 184 SP 185 (247)
Q Consensus 184 ~~ 185 (247)
..
T Consensus 317 QS 318 (479)
T KOG0415|consen 317 QS 318 (479)
T ss_pred hh
Confidence 43
No 117
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.8e-10 Score=95.97 Aligned_cols=86 Identities=19% Similarity=0.405 Sum_probs=77.8
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeE
Q 025858 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQ 87 (247)
Q Consensus 10 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~ 87 (247)
|...-..+.+.|||..|.+-+|+++|.-+|+.||.|.++.|++|..||.+..||||+|++.++.++|.- +...|+.+.
T Consensus 231 pdAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrR 310 (479)
T KOG0415|consen 231 PDADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRR 310 (479)
T ss_pred cccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccce
Confidence 444455678899999999999999999999999999999999999999999999999999999999987 566899999
Q ss_pred EEEeeecC
Q 025858 88 VEIKRTIP 95 (247)
Q Consensus 88 i~v~~~~~ 95 (247)
|.|.++..
T Consensus 311 IHVDFSQS 318 (479)
T KOG0415|consen 311 IHVDFSQS 318 (479)
T ss_pred EEeehhhh
Confidence 99988753
No 118
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.09 E-value=1.6e-10 Score=96.91 Aligned_cols=173 Identities=20% Similarity=0.276 Sum_probs=140.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-cc-CccCCeEEEEeee
Q 025858 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DT-HIINGKQVEIKRT 93 (247)
Q Consensus 16 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~-~~l~g~~i~v~~~ 93 (247)
...++.|++++...+.+.+...++...|......+........++|++.+.|...+.+..|+. .+ ..+.++.+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 467899999999999999899999999987777777766678999999999999999999998 44 3555555444333
Q ss_pred cCCCCC------CCCCCccccEE-EcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHH
Q 025858 94 IPKGSG------QSKDFKTKKIF-VGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166 (247)
Q Consensus 94 ~~~~~~------~~~~~~~~~l~-v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~ 166 (247)
...... ........+++ |++++..+++++|+..|..+|.|..++++.++.++.++|+|+|.|.+..++..++.
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 322211 11222333455 99999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCcccCCcEEEEeecccCccc
Q 025858 167 KGNMIDMAGTQVSLIGWSPVNQL 189 (247)
Q Consensus 167 ~l~~~~~~g~~l~v~~a~~~~~~ 189 (247)
. ....+.++.+.+....+....
T Consensus 246 ~-~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 246 D-QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred c-ccCcccCcccccccCCCCccc
Confidence 7 788899999999888776554
No 119
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=6.2e-11 Score=108.93 Aligned_cols=168 Identities=14% Similarity=0.227 Sum_probs=137.3
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEE
Q 025858 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQV 88 (247)
Q Consensus 11 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i 88 (247)
...+...++|||++||+..+++.+|+-.|..+|.+.+|.+-+.+ .++-.-||||.|.+.+.+-.|.. .+..|..-.+
T Consensus 365 ~~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~ 443 (975)
T KOG0112|consen 365 KLDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTH 443 (975)
T ss_pred cccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcc
Confidence 34566789999999999999999999999999999999987765 45666799999999998888876 5555555555
Q ss_pred EEeeecCCCCCCCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcC
Q 025858 89 EIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168 (247)
Q Consensus 89 ~v~~~~~~~~~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l 168 (247)
++....+ +....+.+++++|++.+....|.+.|..||.|..|.+-.. .-||+|.|++...|+.|+..|
T Consensus 444 r~glG~~------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~ 511 (975)
T KOG0112|consen 444 RIGLGQP------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDM 511 (975)
T ss_pred ccccccc------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHH
Confidence 5555433 3456788999999999999999999999999998877332 339999999999999999999
Q ss_pred CCcccCCc--EEEEeecccCccccc
Q 025858 169 NMIDMAGT--QVSLIGWSPVNQLLK 191 (247)
Q Consensus 169 ~~~~~~g~--~l~v~~a~~~~~~~~ 191 (247)
.|..+.|- .++|.++.+......
T Consensus 512 rgap~G~P~~r~rvdla~~~~~~Pq 536 (975)
T KOG0112|consen 512 RGAPLGGPPRRLRVDLASPPGATPQ 536 (975)
T ss_pred hcCcCCCCCcccccccccCCCCChh
Confidence 99999874 588888776544443
No 120
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.08 E-value=2.5e-10 Score=103.51 Aligned_cols=80 Identities=23% Similarity=0.429 Sum_probs=73.7
Q ss_pred ccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeecc
Q 025858 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWS 184 (247)
Q Consensus 105 ~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 184 (247)
-++||||++|+..+++.||..+|+.||.|++|.++. ++|||||....+++|.+|+.+|+...+.++.|+|.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 366999999999999999999999999999999855 57899999999999999999999999999999999998
Q ss_pred cCcccc
Q 025858 185 PVNQLL 190 (247)
Q Consensus 185 ~~~~~~ 190 (247)
.+....
T Consensus 494 g~G~ks 499 (894)
T KOG0132|consen 494 GKGPKS 499 (894)
T ss_pred cCCcch
Confidence 766554
No 121
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.08 E-value=2.8e-10 Score=103.18 Aligned_cols=108 Identities=23% Similarity=0.462 Sum_probs=85.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeee
Q 025858 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRT 93 (247)
Q Consensus 16 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~ 93 (247)
..++|||||+|+.+++|+||+++|+.||+|.+|.++- ++|||||.+....+|.+|+. +...+.++.|+|.|+
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 4578999999999999999999999999999999875 46899999999999999998 566889999999999
Q ss_pred cCCCCCC-CCCCccccEEEcCCCCCCCHHHHHHHHHh
Q 025858 94 IPKGSGQ-SKDFKTKKIFVGGIPSSVSEDELKNFFSK 129 (247)
Q Consensus 94 ~~~~~~~-~~~~~~~~l~v~~l~~~~t~~~l~~~f~~ 129 (247)
...+... -++.....+=|.-||++.-.++++.+++.
T Consensus 493 ~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~eg 529 (894)
T KOG0132|consen 493 VGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWCEG 529 (894)
T ss_pred ccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhhhh
Confidence 8776643 11122233456667776544556666654
No 122
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.07 E-value=6.3e-10 Score=86.44 Aligned_cols=85 Identities=15% Similarity=0.380 Sum_probs=75.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccC-CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEE
Q 025858 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKY-GDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQV 88 (247)
Q Consensus 12 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~-G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i 88 (247)
.........+++..+|....|.++..+|.++ |.+..+++.+++.||.++|||||+|++.+.|.-|.+ |...|.++.+
T Consensus 43 ~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL 122 (214)
T KOG4208|consen 43 KPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLL 122 (214)
T ss_pred CCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhee
Confidence 3444556679999999999999999999998 789999998999999999999999999999999998 5668899999
Q ss_pred EEeeecCC
Q 025858 89 EIKRTIPK 96 (247)
Q Consensus 89 ~v~~~~~~ 96 (247)
.+++..+.
T Consensus 123 ~c~vmppe 130 (214)
T KOG4208|consen 123 ECHVMPPE 130 (214)
T ss_pred eeEEeCch
Confidence 99987654
No 123
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.00 E-value=5.1e-09 Score=88.25 Aligned_cols=166 Identities=16% Similarity=0.219 Sum_probs=123.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEEe
Q 025858 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIK 91 (247)
Q Consensus 13 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v~ 91 (247)
....++..|..++||...++.+|..+|.-..-..-.+.+.....|...|.|.|.|.|.|.-+.|++ ..+.+.++.|.|.
T Consensus 55 ~~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievY 134 (508)
T KOG1365|consen 55 HSADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVY 134 (508)
T ss_pred cccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeee
Confidence 344556678899999999999999999865444444455555568889999999999999999999 7788999999988
Q ss_pred eecCCCCC------------CCCCCccccEEEcCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCCceeEEEEEE
Q 025858 92 RTIPKGSG------------QSKDFKTKKIFVGGIPSSVSEDELKNFFSKY----GKVLEHQIIRDHETNRSRGFGFVIF 155 (247)
Q Consensus 92 ~~~~~~~~------------~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f 155 (247)
.+....-- -....+.-.|.+++||.++++.++.++|.+- |..+.+-+++. .+|+..|-|||.|
T Consensus 135 ka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlf 213 (508)
T KOG1365|consen 135 KATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLF 213 (508)
T ss_pred ccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEe
Confidence 76543221 0111234468899999999999999999742 34455555444 4589999999999
Q ss_pred cCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 156 DSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 156 ~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
..+++|..|+.+ |...+.-|-|.+
T Consensus 214 a~ee~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 214 ACEEDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred cCHHHHHHHHHH-HHHHHhHHHHHH
Confidence 999999999986 444444444444
No 124
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.94 E-value=2.3e-09 Score=94.42 Aligned_cols=83 Identities=23% Similarity=0.463 Sum_probs=76.6
Q ss_pred cccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeeccc
Q 025858 106 TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWSP 185 (247)
Q Consensus 106 ~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 185 (247)
.++|||.+|...+...+|+.+|++||+|+..+++++-.+...+.|+||+..+.++|.++|..||.+.|.|+.|.|..++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 45899999999999999999999999999999999877777899999999999999999999999999999999988876
Q ss_pred Ccc
Q 025858 186 VNQ 188 (247)
Q Consensus 186 ~~~ 188 (247)
.+.
T Consensus 485 Ep~ 487 (940)
T KOG4661|consen 485 EPG 487 (940)
T ss_pred Ccc
Confidence 443
No 125
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.85 E-value=9.1e-09 Score=89.96 Aligned_cols=79 Identities=27% Similarity=0.497 Sum_probs=68.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEEeeecCC
Q 025858 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPK 96 (247)
Q Consensus 18 ~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v~~~~~~ 96 (247)
-.+|||+|||.++++++|+++|..||.|+...+......+...+||||+|.+.+++..|+. +...++++++.|+-..+.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecccc
Confidence 3459999999999999999999999999998887665445556999999999999999999 777999999999876553
No 126
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.83 E-value=3.9e-08 Score=88.63 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=65.0
Q ss_pred cEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEee
Q 025858 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIG 182 (247)
Q Consensus 108 ~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 182 (247)
.|-+.|+|.+++-+||.+||..|-.+-.-.+++-...|.+.|-|.|.|++.++|.+|...|++..|.+++|.+..
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 588999999999999999999997554433444445699999999999999999999999999999999998754
No 127
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.80 E-value=2e-08 Score=88.66 Aligned_cols=84 Identities=20% Similarity=0.481 Sum_probs=75.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHhccC--ccCCeEEEE
Q 025858 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEI 90 (247)
Q Consensus 13 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~--~l~g~~i~v 90 (247)
......++|||.+|+..+.-.+|+++|++||+|+-.+|+.+..+.-.++|+||++.+.++|.+||.+.| .|.|+.|.|
T Consensus 400 grs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISV 479 (940)
T KOG4661|consen 400 GRSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISV 479 (940)
T ss_pred cccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeee
Confidence 334456789999999999999999999999999999999998888889999999999999999999655 999999999
Q ss_pred eeecCC
Q 025858 91 KRTIPK 96 (247)
Q Consensus 91 ~~~~~~ 96 (247)
..+...
T Consensus 480 EkaKNE 485 (940)
T KOG4661|consen 480 EKAKNE 485 (940)
T ss_pred eecccC
Confidence 887654
No 128
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.80 E-value=2.5e-08 Score=80.99 Aligned_cols=84 Identities=23% Similarity=0.366 Sum_probs=75.3
Q ss_pred ccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeecc
Q 025858 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWS 184 (247)
Q Consensus 105 ~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 184 (247)
...+|+|.|||..++++||+++|..||.++.+.+..++ .|.+.|.|-|.|...++|.+|++.+|+..+.|+.+++....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 44789999999999999999999999999999888885 48999999999999999999999999999999999997766
Q ss_pred cCccc
Q 025858 185 PVNQL 189 (247)
Q Consensus 185 ~~~~~ 189 (247)
+....
T Consensus 161 ~~~~~ 165 (243)
T KOG0533|consen 161 SPSQS 165 (243)
T ss_pred Ccccc
Confidence 54433
No 129
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.79 E-value=5.5e-08 Score=68.01 Aligned_cols=76 Identities=14% Similarity=0.197 Sum_probs=62.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcc--CCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccC----CeEEEE
Q 025858 19 GKIFIGGLPKDTTYATFNKHFGK--YGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIIN----GKQVEI 90 (247)
Q Consensus 19 ~~l~v~nLp~~~te~~l~~~f~~--~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~----g~~i~v 90 (247)
+||+++|||...|.++|.+++.. .|...-+.++.|..++.+.|||||.|.+.+.|.+..+ ++..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999998875 4688889999999899999999999999999999887 555443 344555
Q ss_pred eeec
Q 025858 91 KRTI 94 (247)
Q Consensus 91 ~~~~ 94 (247)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 5554
No 130
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.74 E-value=1.6e-08 Score=89.10 Aligned_cols=158 Identities=18% Similarity=0.249 Sum_probs=109.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEee
Q 025858 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKR 92 (247)
Q Consensus 15 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~ 92 (247)
+.++++|+|-|||..+++++|+.+|+.||+|..|+. +...+|.+||+|-|..+|++|++ +...+.|+.|....
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~ 146 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPG 146 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCC
Confidence 457889999999999999999999999999998665 45567999999999999999999 67788888776221
Q ss_pred ecCCCC------------------CCCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEE
Q 025858 93 TIPKGS------------------GQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVI 154 (247)
Q Consensus 93 ~~~~~~------------------~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~ 154 (247)
...... ..........+ ++.|++.....-++..++-+|.+.. +. ++.-...-|++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~-~g~l~P~~s~~~~~~~~~~~~~~~~-~~-----~~~~~hq~~~~ 219 (549)
T KOG4660|consen 147 GARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQL-FGMLSPTRSSILLEHISSVDGSSPG-RE-----TPLLNHQRFVE 219 (549)
T ss_pred cccccchhcccchhhhhccchhhcCCCCCCcCCcc-eeeeccchhhhhhhcchhccCcccc-cc-----ccchhhhhhhh
Confidence 111000 00111112223 3348888888777777777887655 22 23223356888
Q ss_pred EcCHHHHHHHHHcCCCcccCCcEEEEeeccc
Q 025858 155 FDSEEVVDEMLSKGNMIDMAGTQVSLIGWSP 185 (247)
Q Consensus 155 f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 185 (247)
|.+..++..+...+ |..+.+......+..+
T Consensus 220 ~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 220 FADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred hccccchhhcccCC-ceecCCCCceEEecCC
Confidence 88888886666644 6777777655555444
No 131
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.74 E-value=7.7e-10 Score=94.20 Aligned_cols=151 Identities=21% Similarity=0.361 Sum_probs=120.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--cc-CccCCeEEEEeeecC
Q 025858 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DT-HIINGKQVEIKRTIP 95 (247)
Q Consensus 19 ~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~-~~l~g~~i~v~~~~~ 95 (247)
..+|++||.+.++..+|+.+|...-.-.+-.++.. .|||||...+...|.+|++ ++ ..+.|+++.+..+.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 46899999999999999999987532222333332 3799999999999999998 33 389999999988776
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEE-EecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccC
Q 025858 96 KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQI-IRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMA 174 (247)
Q Consensus 96 ~~~~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~ 174 (247)
+.. .++++-|.|+|+...++.|..++.+||.++.|.. ..++.+ -..-|+|.+.+.+..|+..|+|..+.
T Consensus 76 kkq------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~Q~e 145 (584)
T KOG2193|consen 76 KKQ------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGPQLE 145 (584)
T ss_pred HHH------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcchHhh
Confidence 543 3567999999999999999999999999998854 333332 23346888999999999999999999
Q ss_pred CcEEEEeeccc
Q 025858 175 GTQVSLIGWSP 185 (247)
Q Consensus 175 g~~l~v~~a~~ 185 (247)
...+++.+-..
T Consensus 146 n~~~k~~YiPd 156 (584)
T KOG2193|consen 146 NQHLKVGYIPD 156 (584)
T ss_pred hhhhhcccCch
Confidence 99999977543
No 132
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.73 E-value=1.8e-08 Score=81.92 Aligned_cols=86 Identities=19% Similarity=0.323 Sum_probs=79.6
Q ss_pred CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
....+...+||+|+...+|.+++...|+.+|.|..+.++.|+..+.++||+||+|.+.+.+..|+. |++..+.|+.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 445677899999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred eecccCc
Q 025858 181 IGWSPVN 187 (247)
Q Consensus 181 ~~a~~~~ 187 (247)
.+...+.
T Consensus 175 t~~r~~~ 181 (231)
T KOG4209|consen 175 TLKRTNV 181 (231)
T ss_pred eeeeeec
Confidence 8876653
No 133
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.72 E-value=5.8e-08 Score=78.90 Aligned_cols=84 Identities=14% Similarity=0.366 Sum_probs=75.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEe
Q 025858 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIK 91 (247)
Q Consensus 14 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~ 91 (247)
.+..+.+|.|.|||+.++++||+++|..||.+..+.+..++ .|.+.|.|-|.|...+||.+|++ ++..++|+.+.+.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 44556789999999999999999999999999999998888 89999999999999999999999 7789999999888
Q ss_pred eecCCCC
Q 025858 92 RTIPKGS 98 (247)
Q Consensus 92 ~~~~~~~ 98 (247)
...+...
T Consensus 158 ~i~~~~~ 164 (243)
T KOG0533|consen 158 IISSPSQ 164 (243)
T ss_pred EecCccc
Confidence 7755433
No 134
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.72 E-value=1.1e-08 Score=90.13 Aligned_cols=75 Identities=31% Similarity=0.450 Sum_probs=68.0
Q ss_pred CCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEE
Q 025858 100 QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVS 179 (247)
Q Consensus 100 ~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~ 179 (247)
...+.+.++|+|-|||..+++++|+++|+.||+|.+|+. |...+|.+||+|.|..+|++|+++|++.++.|+.++
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 345667889999999999999999999999999999764 344688999999999999999999999999999998
No 135
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.69 E-value=5.1e-08 Score=85.31 Aligned_cols=81 Identities=22% Similarity=0.443 Sum_probs=69.7
Q ss_pred ccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeecccC
Q 025858 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWSPV 186 (247)
Q Consensus 107 ~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~ 186 (247)
..|||+|||.++++++|+++|.+||.|+...|......++..+||||+|.+.+++..||.+ +-..+.+++|.|...++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 3599999999999999999999999999988877653344459999999999999999996 678899999999877664
Q ss_pred cc
Q 025858 187 NQ 188 (247)
Q Consensus 187 ~~ 188 (247)
..
T Consensus 368 ~~ 369 (419)
T KOG0116|consen 368 FR 369 (419)
T ss_pred cc
Confidence 33
No 136
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.69 E-value=1.9e-07 Score=65.37 Aligned_cols=79 Identities=15% Similarity=0.161 Sum_probs=68.5
Q ss_pred ccEEEcCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccC----CcEEEE
Q 025858 107 KKIFVGGIPSSVSEDELKNFFSKY--GKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMA----GTQVSL 180 (247)
Q Consensus 107 ~~l~v~~l~~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~----g~~l~v 180 (247)
++|.|+|+|...|.++|.+++... |...-+-++.|-.++.+.|||||.|.+.+.|.+..+.++|.... .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999999764 67778889999888999999999999999999999999998864 445677
Q ss_pred eeccc
Q 025858 181 IGWSP 185 (247)
Q Consensus 181 ~~a~~ 185 (247)
.+|.-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77753
No 137
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.67 E-value=2.6e-08 Score=79.81 Aligned_cols=85 Identities=16% Similarity=0.482 Sum_probs=75.1
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCe
Q 025858 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGK 86 (247)
Q Consensus 9 ~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~ 86 (247)
+...+-++...+||.+.|..+++++-|...|.+|-.....++++|+.||+++||+||.|.+.+++..|+. +++.++.+
T Consensus 181 Psl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsr 260 (290)
T KOG0226|consen 181 PSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSR 260 (290)
T ss_pred cccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccc
Confidence 3344455667899999999999999999999999999999999999999999999999999999999998 77888888
Q ss_pred EEEEeee
Q 025858 87 QVEIKRT 93 (247)
Q Consensus 87 ~i~v~~~ 93 (247)
.|.+..+
T Consensus 261 piklRkS 267 (290)
T KOG0226|consen 261 PIKLRKS 267 (290)
T ss_pred hhHhhhh
Confidence 8877554
No 138
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.64 E-value=5.7e-08 Score=87.74 Aligned_cols=85 Identities=25% Similarity=0.337 Sum_probs=76.1
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC---CCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEE
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHE---TNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVS 179 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~ 179 (247)
++..++|||+||++.+++++|...|..||.|..++++..+. ....+.|+||.|-+..+|++|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 45677899999999999999999999999999999997753 245678999999999999999999999999999999
Q ss_pred EeecccCc
Q 025858 180 LIGWSPVN 187 (247)
Q Consensus 180 v~~a~~~~ 187 (247)
+-|+++-+
T Consensus 251 ~gWgk~V~ 258 (877)
T KOG0151|consen 251 LGWGKAVP 258 (877)
T ss_pred eccccccc
Confidence 99986543
No 139
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.63 E-value=1.2e-07 Score=85.61 Aligned_cols=172 Identities=10% Similarity=-0.009 Sum_probs=128.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEEe
Q 025858 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIK 91 (247)
Q Consensus 13 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v~ 91 (247)
.-..+.+-+-+.+.+.+..+.|++++|... .+....+..+...+...|-++|+|....++.+|++ +...+-.|.+.+.
T Consensus 306 qvv~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~ 384 (944)
T KOG4307|consen 306 QVVSDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTG 384 (944)
T ss_pred cccchhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeec
Confidence 334556678888999999999999998754 35566677776566668999999999999999999 4445556666664
Q ss_pred eecCCCCC-----------------------------------CCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEE
Q 025858 92 RTIPKGSG-----------------------------------QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136 (247)
Q Consensus 92 ~~~~~~~~-----------------------------------~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v 136 (247)
........ ........+|||..||..+++.++.++|..--.|++.
T Consensus 385 P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~ 464 (944)
T KOG4307|consen 385 PPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDF 464 (944)
T ss_pred CCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhhe
Confidence 33211000 0111234589999999999999999999998888874
Q ss_pred EEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeeccc
Q 025858 137 QIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWSP 185 (247)
Q Consensus 137 ~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 185 (247)
-.+....+++.++.|||+|..++++..|...-+...+..+.|+|.....
T Consensus 465 I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~ 513 (944)
T KOG4307|consen 465 IELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIAD 513 (944)
T ss_pred eEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhh
Confidence 3344445678889999999999999999887677778888899965443
No 140
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.62 E-value=3.3e-08 Score=78.65 Aligned_cols=71 Identities=23% Similarity=0.539 Sum_probs=65.7
Q ss_pred ccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeeccc
Q 025858 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWSP 185 (247)
Q Consensus 107 ~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 185 (247)
..+||++||+.+.+.+|.++|..||.+..+.+. .||+||+|.+..+|..|+..||++.++|..+.|.++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 368999999999999999999999999999883 45999999999999999999999999999999988885
No 141
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.61 E-value=1.6e-07 Score=84.88 Aligned_cols=80 Identities=15% Similarity=0.372 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCC---CCcceEEEEEecCHHHHHHHHh--ccCccCCeEEE
Q 025858 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYT---GQPRGFGFITYADPSVVDKVIE--DTHIINGKQVE 89 (247)
Q Consensus 15 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~ 89 (247)
+...++|||+||++.++|+.|...|..||+|.++++++.+.. ...+-|+||.|.+..||++|++ ++..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 567789999999999999999999999999999999976632 4567899999999999999999 77889999999
Q ss_pred Eeeec
Q 025858 90 IKRTI 94 (247)
Q Consensus 90 v~~~~ 94 (247)
+.|+.
T Consensus 251 ~gWgk 255 (877)
T KOG0151|consen 251 LGWGK 255 (877)
T ss_pred ecccc
Confidence 99984
No 142
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.56 E-value=3.3e-08 Score=77.64 Aligned_cols=77 Identities=22% Similarity=0.270 Sum_probs=69.4
Q ss_pred CccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEee
Q 025858 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIG 182 (247)
Q Consensus 104 ~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 182 (247)
...++|+|+|+...++|+.|.++|-+-|.|.+|.|+.++. ++.+ ||||.|.++.+..-|++.|||..+.++.+++.+
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 3468999999999999999999999999999999987754 5566 999999999999999999999999999888754
No 143
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.51 E-value=4.5e-07 Score=75.80 Aligned_cols=79 Identities=18% Similarity=0.374 Sum_probs=71.4
Q ss_pred ccccEEEcCCCCCCCHHHHHHHHHhcCCeE--------EEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCc
Q 025858 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVL--------EHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGT 176 (247)
Q Consensus 105 ~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~ 176 (247)
.++.|||.|||.++|.+++.++|+++|.|. .|++-++.. |..+|=|++.|--.++..-|++.|++..+.|+
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 456799999999999999999999999875 467888755 99999999999999999999999999999999
Q ss_pred EEEEeecc
Q 025858 177 QVSLIGWS 184 (247)
Q Consensus 177 ~l~v~~a~ 184 (247)
.|+|..|.
T Consensus 212 ~~rVerAk 219 (382)
T KOG1548|consen 212 KLRVERAK 219 (382)
T ss_pred EEEEehhh
Confidence 99997764
No 144
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.51 E-value=2e-07 Score=75.90 Aligned_cols=85 Identities=20% Similarity=0.468 Sum_probs=77.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEE
Q 025858 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEI 90 (247)
Q Consensus 12 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v 90 (247)
.....+.+.+||+|+.+.+|.+++...|+.||.|..+.+..|+.++.++|||||+|.+.+.+..|+. ++..+.|+.+.+
T Consensus 95 ~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 95 RQKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEV 174 (231)
T ss_pred hhhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCccccccccee
Confidence 3455678899999999999999999999999999999999999889999999999999999999999 888999999988
Q ss_pred eeecCC
Q 025858 91 KRTIPK 96 (247)
Q Consensus 91 ~~~~~~ 96 (247)
.+..-.
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 876544
No 145
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.49 E-value=1.1e-06 Score=69.38 Aligned_cols=87 Identities=15% Similarity=0.242 Sum_probs=69.5
Q ss_pred CccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC-CceeEEEEEEcCHHHHHHHHHcCCCcccC---CcEEE
Q 025858 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETN-RSRGFGFVIFDSEEVVDEMLSKGNMIDMA---GTQVS 179 (247)
Q Consensus 104 ~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~-~~~g~afV~f~~~~~a~~ai~~l~~~~~~---g~~l~ 179 (247)
...++|||.+||.++...+|..+|..|-.-+.+.+......+ -.+-+|||.|.+.++|..|.+.|||..|+ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 347899999999999999999999998766666554432222 23468999999999999999999999875 67899
Q ss_pred EeecccCcccc
Q 025858 180 LIGWSPVNQLL 190 (247)
Q Consensus 180 v~~a~~~~~~~ 190 (247)
+..|+.+....
T Consensus 112 iElAKSNtK~k 122 (284)
T KOG1457|consen 112 IELAKSNTKRK 122 (284)
T ss_pred eeehhcCcccc
Confidence 98887655443
No 146
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.48 E-value=1.2e-07 Score=80.40 Aligned_cols=157 Identities=11% Similarity=0.068 Sum_probs=113.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCC---CCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEee
Q 025858 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRY---TGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKR 92 (247)
Q Consensus 18 ~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~ 92 (247)
...|.|.||.+++|.+++..+|...|+|.++.|+.... -......|||.|.|...+..|.. +...++-..|.+-+
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 34899999999999999999999999999999976332 24567899999999999998887 44455544444333
Q ss_pred ecCCCCC-----------------------------------------CC----------CCCccccEEEcCCCCCCCHH
Q 025858 93 TIPKGSG-----------------------------------------QS----------KDFKTKKIFVGGIPSSVSED 121 (247)
Q Consensus 93 ~~~~~~~-----------------------------------------~~----------~~~~~~~l~v~~l~~~~t~~ 121 (247)
.....+. .+ -..-.++++|.+|+..|...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 2211100 00 00012479999999999999
Q ss_pred HHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEE
Q 025858 122 ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVS 179 (247)
Q Consensus 122 ~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~ 179 (247)
++.+.|+.+|.+....+.- +...-+|-++|........|+. ++|..+.-....
T Consensus 167 e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr 219 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSR 219 (479)
T ss_pred hhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhh
Confidence 9999999999987665532 3334477899998888889988 577776643333
No 147
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.33 E-value=2.7e-06 Score=57.00 Aligned_cols=69 Identities=19% Similarity=0.321 Sum_probs=47.3
Q ss_pred ccEEEcCCCCCCCHH----HHHHHHHhcC-CeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEe
Q 025858 107 KKIFVGGIPSSVSED----ELKNFFSKYG-KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLI 181 (247)
Q Consensus 107 ~~l~v~~l~~~~t~~----~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 181 (247)
..|+|.|||.+.+.. .|++++..+| .|.+|. .+-|.|.|.+.+.|.+|.+.|+|..+.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 468999999998875 4556777776 566552 3479999999999999999999999999999999
Q ss_pred eccc
Q 025858 182 GWSP 185 (247)
Q Consensus 182 ~a~~ 185 (247)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 8743
No 148
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.17 E-value=2.4e-06 Score=71.98 Aligned_cols=86 Identities=22% Similarity=0.303 Sum_probs=77.6
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeE--------EEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccC
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVL--------EHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMA 174 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~ 174 (247)
.....+|||-+||..+++++|.++|.++|.|. .+.+-++++|+++||-|.|.|++...|+.|+.-+++..++
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34566899999999999999999999999875 3667788899999999999999999999999999999999
Q ss_pred CcEEEEeecccCcc
Q 025858 175 GTQVSLIGWSPVNQ 188 (247)
Q Consensus 175 g~~l~v~~a~~~~~ 188 (247)
|..|+|..|..+..
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999998876653
No 149
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.06 E-value=2.7e-07 Score=85.07 Aligned_cols=149 Identities=14% Similarity=0.142 Sum_probs=115.5
Q ss_pred CeEEEcCCCCCCCHH-HHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEEeeecCC
Q 025858 19 GKIFIGGLPKDTTYA-TFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPK 96 (247)
Q Consensus 19 ~~l~v~nLp~~~te~-~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v~~~~~~ 96 (247)
....+.++.+...+. ..+..|..+|.++.++.......-...-++++++....+++.|.. .+..+.++...+..+.+.
T Consensus 572 ~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad~~ 651 (881)
T KOG0128|consen 572 REKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLADAE 651 (881)
T ss_pred hhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCCCch
Confidence 345566776665555 578889999999999887632222222288999999999999988 777888888888777665
Q ss_pred CCCCCCC------CccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHc
Q 025858 97 GSGQSKD------FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167 (247)
Q Consensus 97 ~~~~~~~------~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~ 167 (247)
....... ....++||.||+..+.+++|...|..+|.+..+++......++.+|+|++.|...+++.+|+..
T Consensus 652 ~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f 728 (881)
T KOG0128|consen 652 EKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAF 728 (881)
T ss_pred hhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhh
Confidence 4322111 2345799999999999999999999999998887765556788999999999999999999885
No 150
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.02 E-value=8.2e-06 Score=68.82 Aligned_cols=96 Identities=24% Similarity=0.392 Sum_probs=79.3
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCee--------EEEEeecCCCCCcceEEEEEecCHHH
Q 025858 1 MGSKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDIT--------DSVIMKDRYTGQPRGFGFITYADPSV 72 (247)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~--------~i~~~~~~~~~~~~g~afV~f~~~~~ 72 (247)
|.+..........+....-+|||-+||.++++++|.++|.++|.|. .|.+-+++.|++.|+-|.|.|.|...
T Consensus 49 m~~g~~~~~~~~~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~ 128 (351)
T KOG1995|consen 49 MSSGNRGDASSMADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPA 128 (351)
T ss_pred cCCCCCcCcCccccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhh
Confidence 4444554455566677888999999999999999999999998774 37788888999999999999999999
Q ss_pred HHHHHh--ccCccCCeEEEEeeecCC
Q 025858 73 VDKVIE--DTHIINGKQVEIKRTIPK 96 (247)
Q Consensus 73 a~~a~~--~~~~l~g~~i~v~~~~~~ 96 (247)
|+.|+. +...+.+..|.|..+...
T Consensus 129 akaai~~~agkdf~gn~ikvs~a~~r 154 (351)
T KOG1995|consen 129 AKAAIEWFAGKDFCGNTIKVSLAERR 154 (351)
T ss_pred hhhhhhhhccccccCCCchhhhhhhc
Confidence 999998 778888888877666443
No 151
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.99 E-value=1e-05 Score=57.77 Aligned_cols=69 Identities=25% Similarity=0.420 Sum_probs=43.2
Q ss_pred ccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCC-----cccCCcEEEEe
Q 025858 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNM-----IDMAGTQVSLI 181 (247)
Q Consensus 107 ~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~-----~~~~g~~l~v~ 181 (247)
..|++.+++..++.++|++.|++||.|..|.+..... -|+|.|.+.++|+.|+..+.. ..+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 3588899999999999999999999999999865432 799999999999999886443 34556555554
No 152
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.86 E-value=7.4e-05 Score=50.18 Aligned_cols=67 Identities=7% Similarity=0.301 Sum_probs=45.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHH----hccCC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEE
Q 025858 18 PGKIFIGGLPKDTTYATFNKH----FGKYG-DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEI 90 (247)
Q Consensus 18 ~~~l~v~nLp~~~te~~l~~~----f~~~G-~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v 90 (247)
...|+|.|||.+.+...|+.- +..+| .|.+|. .+.|+|.|.+++.|.+|.+ ++..+.|++|.|
T Consensus 2 ~s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v 71 (90)
T PF11608_consen 2 HSLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISV 71 (90)
T ss_dssp SEEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EE
T ss_pred ccEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEE
Confidence 356999999999998876654 45676 665551 2479999999999999999 677899999999
Q ss_pred eeec
Q 025858 91 KRTI 94 (247)
Q Consensus 91 ~~~~ 94 (247)
.+..
T Consensus 72 ~~~~ 75 (90)
T PF11608_consen 72 SFSP 75 (90)
T ss_dssp ESS-
T ss_pred EEcC
Confidence 8874
No 153
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.83 E-value=1.8e-05 Score=66.56 Aligned_cols=85 Identities=21% Similarity=0.462 Sum_probs=75.1
Q ss_pred CCCCCCeEE-EcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEEe
Q 025858 14 DGASPGKIF-IGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIK 91 (247)
Q Consensus 14 ~~~~~~~l~-v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v~ 91 (247)
....+.+++ |++|+.++++++|.+.|..+|.|..+++..++.++.++|+|+|.|.+..++.+++. ..+.+.++++.+.
T Consensus 180 ~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 180 SSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLE 259 (285)
T ss_pred ccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccc
Confidence 334555666 99999999999999999999999999999999999999999999999999999998 6678999999998
Q ss_pred eecCCCC
Q 025858 92 RTIPKGS 98 (247)
Q Consensus 92 ~~~~~~~ 98 (247)
...+.+.
T Consensus 260 ~~~~~~~ 266 (285)
T KOG4210|consen 260 EDEPRPK 266 (285)
T ss_pred cCCCCcc
Confidence 8766544
No 154
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.83 E-value=4.5e-05 Score=63.89 Aligned_cols=81 Identities=15% Similarity=0.350 Sum_probs=63.1
Q ss_pred ccccEEEcCCCCCCCHHHH------HHHHHhcCCeEEEEEEecCCCCC-ceeE--EEEEEcCHHHHHHHHHcCCCcccCC
Q 025858 105 KTKKIFVGGIPSSVSEDEL------KNFFSKYGKVLEHQIIRDHETNR-SRGF--GFVIFDSEEVVDEMLSKGNMIDMAG 175 (247)
Q Consensus 105 ~~~~l~v~~l~~~~t~~~l------~~~f~~~G~i~~v~i~~~~~~~~-~~g~--afV~f~~~~~a~~ai~~l~~~~~~g 175 (247)
...-+||-+|++.+..+++ .++|.+||.|..+.+-+.-.... ..+. .||+|.+.++|.+||++.+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 3456899999998877652 37999999999988755421111 1222 3999999999999999999999999
Q ss_pred cEEEEeeccc
Q 025858 176 TQVSLIGWSP 185 (247)
Q Consensus 176 ~~l~v~~a~~ 185 (247)
+.|+..+...
T Consensus 193 r~lkatYGTT 202 (480)
T COG5175 193 RVLKATYGTT 202 (480)
T ss_pred ceEeeecCch
Confidence 9999977653
No 155
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.64 E-value=0.00019 Score=44.57 Aligned_cols=52 Identities=19% Similarity=0.477 Sum_probs=41.0
Q ss_pred ccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHH
Q 025858 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165 (247)
Q Consensus 107 ~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai 165 (247)
+.|-|.+.+.+.. +.+...|.+||+|..+.+. ......+|+|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 4577888887655 4555688899999998884 23448999999999999985
No 156
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.63 E-value=0.00013 Score=52.09 Aligned_cols=54 Identities=17% Similarity=0.409 Sum_probs=35.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh
Q 025858 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78 (247)
Q Consensus 19 ~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 78 (247)
..|.+.+++..++-++|++.|++||.|..|.+.+.. .-|+|.|.+.++|+.|+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~ 55 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALE 55 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHH
Confidence 468899999999999999999999999888886543 269999999999999998
No 157
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.61 E-value=0.00038 Score=49.04 Aligned_cols=78 Identities=21% Similarity=0.356 Sum_probs=52.4
Q ss_pred ccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEE-EEecC------CCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcE
Q 025858 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ-IIRDH------ETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQ 177 (247)
Q Consensus 105 ~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~-i~~~~------~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~ 177 (247)
..+-|.|-+.|+. ....|.+.|++||.|.+.. +.++. ......+...|+|.++.+|.+|+.. ||..+.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 3456888888887 6778889999999998775 11100 0011234789999999999999995 999999875
Q ss_pred E-EEeecc
Q 025858 178 V-SLIGWS 184 (247)
Q Consensus 178 l-~v~~a~ 184 (247)
+ -|.+.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 4 466664
No 158
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.55 E-value=6.3e-05 Score=63.30 Aligned_cols=76 Identities=12% Similarity=0.324 Sum_probs=67.8
Q ss_pred ccccEEEcCCCCCCCHHHHHHHHHhcC--CeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 105 KTKKIFVGGIPSSVSEDELKNFFSKYG--KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 105 ~~~~l~v~~l~~~~t~~~l~~~f~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
..-++||+||-+-+|++||.+.++.-| .+.+++++.++..|.+||||+|...+..+.++.++.|-.+.+.|+.-.|
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 345799999999999999999999877 5778888888888999999999999999999999999999999987555
No 159
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.51 E-value=0.00026 Score=43.91 Aligned_cols=53 Identities=21% Similarity=0.462 Sum_probs=42.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHH
Q 025858 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI 77 (247)
Q Consensus 18 ~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~ 77 (247)
++.|-|.+.|++..+. +...|.+||+|..+.+... .-..+|.|.+..+|++|+
T Consensus 1 ~~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 3578889998886654 6669999999999888622 347999999999999985
No 160
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.50 E-value=0.0003 Score=60.85 Aligned_cols=81 Identities=16% Similarity=0.262 Sum_probs=65.2
Q ss_pred EeeecCCCCCCCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEec---CCC--CCc--------eeEEEEEEc
Q 025858 90 IKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRD---HET--NRS--------RGFGFVIFD 156 (247)
Q Consensus 90 v~~~~~~~~~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~---~~~--~~~--------~g~afV~f~ 156 (247)
|.+..+-.....++.+.++|.+-|||.+-.-+.|.++|+.+|.|..|+|... +.+ +.+ +-+|+|+|+
T Consensus 215 VrRisPlp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye 294 (484)
T KOG1855|consen 215 VRRISPLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYE 294 (484)
T ss_pred eeecCCCCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhh
Confidence 4455555555566678999999999999999999999999999999999887 332 222 457999999
Q ss_pred CHHHHHHHHHcCCC
Q 025858 157 SEEVVDEMLSKGNM 170 (247)
Q Consensus 157 ~~~~a~~ai~~l~~ 170 (247)
..+.|.+|...|+.
T Consensus 295 ~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 295 EVEAARKARELLNP 308 (484)
T ss_pred hhHHHHHHHHhhch
Confidence 99999999987653
No 161
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.49 E-value=6.3e-05 Score=60.74 Aligned_cols=73 Identities=22% Similarity=0.358 Sum_probs=62.2
Q ss_pred ccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC--------CCcee----EEEEEEcCHHHHHHHHHcCCCcc
Q 025858 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHET--------NRSRG----FGFVIFDSEEVVDEMLSKGNMID 172 (247)
Q Consensus 105 ~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~--------~~~~g----~afV~f~~~~~a~~ai~~l~~~~ 172 (247)
....||++++|+.+....|+++|++||.|-.|.+-+...+ |..++ -|.|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4567999999999999999999999999999988766544 22222 27899999999999999999999
Q ss_pred cCCcE
Q 025858 173 MAGTQ 177 (247)
Q Consensus 173 ~~g~~ 177 (247)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99986
No 162
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.0002 Score=63.83 Aligned_cols=76 Identities=21% Similarity=0.268 Sum_probs=61.3
Q ss_pred ccccEEEcCCCCC--CC----HHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccC-CcE
Q 025858 105 KTKKIFVGGIPSS--VS----EDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMA-GTQ 177 (247)
Q Consensus 105 ~~~~l~v~~l~~~--~t----~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~-g~~ 177 (247)
-...|.|.|+|-- .. ..-|..+|+++|++....++.+.. |..+||.|++|.+..+|..|++.|||..+. .+.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 3557888988852 22 245668999999999999998866 449999999999999999999999998875 556
Q ss_pred EEEe
Q 025858 178 VSLI 181 (247)
Q Consensus 178 l~v~ 181 (247)
..|+
T Consensus 136 f~v~ 139 (698)
T KOG2314|consen 136 FFVR 139 (698)
T ss_pred EEee
Confidence 6664
No 163
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.47 E-value=0.00027 Score=59.31 Aligned_cols=78 Identities=19% Similarity=0.438 Sum_probs=60.2
Q ss_pred CCCeEEEcCCCCCCCHHHH------HHHhccCCCeeEEEEeecCCC-CCcceEE--EEEecCHHHHHHHHh--ccCccCC
Q 025858 17 SPGKIFIGGLPKDTTYATF------NKHFGKYGDITDSVIMKDRYT-GQPRGFG--FITYADPSVVDKVIE--DTHIING 85 (247)
Q Consensus 17 ~~~~l~v~nLp~~~te~~l------~~~f~~~G~i~~i~~~~~~~~-~~~~g~a--fV~f~~~~~a~~a~~--~~~~l~g 85 (247)
+..-+||-+||+.+..|++ .++|.+||.|..|.+-+.... ....+.+ ||+|.+.|+|.+|+. ++..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 4456899999988777763 479999999988777544311 2223334 999999999999998 8999999
Q ss_pred eEEEEeeec
Q 025858 86 KQVEIKRTI 94 (247)
Q Consensus 86 ~~i~v~~~~ 94 (247)
|-|+..+..
T Consensus 193 r~lkatYGT 201 (480)
T COG5175 193 RVLKATYGT 201 (480)
T ss_pred ceEeeecCc
Confidence 999988764
No 164
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.34 E-value=0.00075 Score=59.75 Aligned_cols=67 Identities=22% Similarity=0.341 Sum_probs=61.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhc-cCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh
Q 025858 12 TGDGASPGKIFIGGLPKDTTYATFNKHFG-KYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78 (247)
Q Consensus 12 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~-~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 78 (247)
.....+.+|||||+||.-+|-++|..+|+ .||-|..+-|-.|+.-+.++|-|=|.|.+..+-.+|+.
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 34456789999999999999999999999 69999999999998789999999999999999999997
No 165
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.24 E-value=0.00028 Score=59.44 Aligned_cols=74 Identities=23% Similarity=0.385 Sum_probs=63.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCC--CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEE
Q 025858 17 SPGKIFIGGLPKDTTYATFNKHFGKYG--DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEI 90 (247)
Q Consensus 17 ~~~~l~v~nLp~~~te~~l~~~f~~~G--~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v 90 (247)
..-++||+||-..+|++||.+.+...| .+.++++..++.+|++||||+|...+...+++-++ -...|+|+.-.|
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 345799999999999999999999887 78889999999899999999999999999988887 445677765444
No 166
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.21 E-value=0.00015 Score=58.77 Aligned_cols=62 Identities=21% Similarity=0.201 Sum_probs=50.6
Q ss_pred HHHHHHHH-hcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeec
Q 025858 121 DELKNFFS-KYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGW 183 (247)
Q Consensus 121 ~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 183 (247)
+++...|+ +||+|+++.+.... .-.-+|-++|.|...++|++|++.||+..+.|++|...+.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 45555666 89999998765542 2346788999999999999999999999999999998664
No 167
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.20 E-value=0.0012 Score=54.48 Aligned_cols=64 Identities=28% Similarity=0.169 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCCeEEEEEEecCCCCCc-eeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeec
Q 025858 120 EDELKNFFSKYGKVLEHQIIRDHETNRS-RGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGW 183 (247)
Q Consensus 120 ~~~l~~~f~~~G~i~~v~i~~~~~~~~~-~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 183 (247)
++++++.+++||.|..|.|+.++..... .--.||+|+..++|.+|+-.|||+.|.|+.+..-+-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 4688899999999999988877533222 224799999999999999999999999999887553
No 168
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.15 E-value=0.0013 Score=53.40 Aligned_cols=88 Identities=14% Similarity=0.271 Sum_probs=72.6
Q ss_pred HHHHHHhccCccCCeEEEEeeecCCCCCCCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEE
Q 025858 72 VVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFG 151 (247)
Q Consensus 72 ~a~~a~~~~~~l~g~~i~v~~~~~~~~~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~a 151 (247)
.|++++ ++....++.++|.++.. ..|+|.||..-++.+.+.+.|+.||.|+.-.+..|.. +++.+-+
T Consensus 9 ~ak~eL-d~~~~~~~~lr~rfa~~-----------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r-~k~t~eg 75 (275)
T KOG0115|consen 9 IAKREL-DGRFPKGRSLRVRFAMH-----------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR-GKPTREG 75 (275)
T ss_pred HHHHhc-CCCCCCCCceEEEeecc-----------ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc-ccccccc
Confidence 333333 56678899999999853 4799999999999999999999999999888888854 7888999
Q ss_pred EEEEcCHHHHHHHHHcCCCcc
Q 025858 152 FVIFDSEEVVDEMLSKGNMID 172 (247)
Q Consensus 152 fV~f~~~~~a~~ai~~l~~~~ 172 (247)
+|.|...-.|.+|...++-.-
T Consensus 76 ~v~~~~k~~a~~a~rr~~~~g 96 (275)
T KOG0115|consen 76 IVEFAKKPNARKAARRCREGG 96 (275)
T ss_pred hhhhhcchhHHHHHHHhccCc
Confidence 999999999999988764333
No 169
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.10 E-value=0.0022 Score=45.21 Aligned_cols=77 Identities=18% Similarity=0.380 Sum_probs=51.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEE-EeecC------CCCCcceEEEEEecCHHHHHHHHh-ccCccCCeE
Q 025858 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSV-IMKDR------YTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQ 87 (247)
Q Consensus 16 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~-~~~~~------~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~ 87 (247)
...+.|.|-+.|+. ....|.+.|++||.|.+.. +.++. ..........|.|.++.+|.+|+. |+..+.|.-
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~ 82 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSL 82 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCE
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcE
Confidence 45667889999998 5566889999999987764 11100 011234578999999999999999 899998865
Q ss_pred E-EEeee
Q 025858 88 V-EIKRT 93 (247)
Q Consensus 88 i-~v~~~ 93 (247)
+ -|.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 4 45554
No 170
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.98 E-value=0.00094 Score=57.84 Aligned_cols=64 Identities=27% Similarity=0.419 Sum_probs=55.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeec---CCC--C--------CcceEEEEEecCHHHHHHHHh
Q 025858 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKD---RYT--G--------QPRGFGFITYADPSVVDKVIE 78 (247)
Q Consensus 15 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~---~~~--~--------~~~g~afV~f~~~~~a~~a~~ 78 (247)
.-++++|.+.|||.+-.-+-|.++|..+|.|.+|++... +.. + ..+-+|+|+|...+.|.+|.+
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 348999999999999999999999999999999999865 222 1 136789999999999999998
No 171
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.97 E-value=0.0026 Score=47.65 Aligned_cols=56 Identities=27% Similarity=0.372 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeeccc
Q 025858 121 DELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWSP 185 (247)
Q Consensus 121 ~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 185 (247)
.+|.+.|.+||++.=+++.-+ .-.|+|.+-++|.+|+. ++|.+++|+.|+|+...+
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE---
T ss_pred HHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCc
Confidence 367788889999888877554 46999999999999998 799999999999988765
No 172
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.72 E-value=0.0073 Score=45.27 Aligned_cols=55 Identities=20% Similarity=0.433 Sum_probs=44.6
Q ss_pred HHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEEeeecCC
Q 025858 34 TFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPK 96 (247)
Q Consensus 34 ~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v~~~~~~ 96 (247)
+|.+.|..||.+.-++++-+. -+|+|.+.+.|.+|+. ++..++|+.|.|....|.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~~--------mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGDT--------MWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETTC--------EEEEESSCHHHHHHHHGCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeCCe--------EEEEECccHHHHHHHccCCcEECCEEEEEEeCCcc
Confidence 567788899999888887654 7999999999999999 999999999999887654
No 173
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.55 E-value=0.014 Score=39.30 Aligned_cols=53 Identities=15% Similarity=0.305 Sum_probs=41.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh
Q 025858 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78 (247)
Q Consensus 17 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 78 (247)
..+..+|. .|..+...||.++|+.||.|. |..+-|. .|||...+.+.|..++.
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~ 60 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMN 60 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHH
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHH
Confidence 34556666 999999999999999999974 7777764 79999999999999887
No 174
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.54 E-value=0.0052 Score=55.14 Aligned_cols=75 Identities=17% Similarity=0.299 Sum_probs=55.8
Q ss_pred CCCCeEEEcCCCCCCC--HH----HHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCcc-CCe
Q 025858 16 ASPGKIFIGGLPKDTT--YA----TFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHII-NGK 86 (247)
Q Consensus 16 ~~~~~l~v~nLp~~~t--e~----~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l-~g~ 86 (247)
--...|.|.|+|.--. .+ -|.++|+++|++....+..+..+ .++||.|++|.+..+|+.|++ +|+.| .+|
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~g-gtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEG-GTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccC-CeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 3445788999986422 22 25678999999999999888844 499999999999999999998 55533 344
Q ss_pred EEEEe
Q 025858 87 QVEIK 91 (247)
Q Consensus 87 ~i~v~ 91 (247)
...|.
T Consensus 135 tf~v~ 139 (698)
T KOG2314|consen 135 TFFVR 139 (698)
T ss_pred eEEee
Confidence 55443
No 175
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.43 E-value=0.0048 Score=52.99 Aligned_cols=79 Identities=15% Similarity=0.187 Sum_probs=64.3
Q ss_pred cccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEee
Q 025858 106 TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHET---NRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIG 182 (247)
Q Consensus 106 ~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 182 (247)
...|.|.||.+++|.++++.+|.-.|+|.++.++..... ......|||.|.+...+.-|.. |.++.+-++.|.|..
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 347999999999999999999999999999998764221 2345689999999988887765 788999999888866
Q ss_pred ccc
Q 025858 183 WSP 185 (247)
Q Consensus 183 a~~ 185 (247)
...
T Consensus 86 ~~~ 88 (479)
T KOG4676|consen 86 YGD 88 (479)
T ss_pred cCC
Confidence 543
No 176
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.34 E-value=0.001 Score=62.54 Aligned_cols=83 Identities=19% Similarity=0.265 Sum_probs=70.2
Q ss_pred ccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeecc
Q 025858 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWS 184 (247)
Q Consensus 105 ~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 184 (247)
.+++|+++||+..+++.+|+..|..+|.+.+|.|-+.+. +...-||||.|.+...+-+|+..+.+..|....+++.+..
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 466899999999999999999999999999999977743 3345599999999999999999999998887777777665
Q ss_pred cCcc
Q 025858 185 PVNQ 188 (247)
Q Consensus 185 ~~~~ 188 (247)
++..
T Consensus 450 ~kst 453 (975)
T KOG0112|consen 450 PKST 453 (975)
T ss_pred cccc
Confidence 4333
No 177
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.32 E-value=0.0037 Score=50.79 Aligned_cols=71 Identities=15% Similarity=0.419 Sum_probs=56.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCC--------CCcc----eEEEEEecCHHHHHHHHh--ccCc
Q 025858 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYT--------GQPR----GFGFITYADPSVVDKVIE--DTHI 82 (247)
Q Consensus 17 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~--------~~~~----g~afV~f~~~~~a~~a~~--~~~~ 82 (247)
....||+++||+.+...-|+++|+.||.|-.|.+-....+ |.++ .=|.|+|.+...|.++.. ++..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999988888665533 2222 236799999999998777 6677
Q ss_pred cCCeE
Q 025858 83 INGKQ 87 (247)
Q Consensus 83 l~g~~ 87 (247)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 77764
No 178
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.28 E-value=0.044 Score=34.92 Aligned_cols=55 Identities=25% Similarity=0.434 Sum_probs=44.9
Q ss_pred cccEEEcCCCCCCCHHHHHHHHHhc---CCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcC
Q 025858 106 TKKIFVGGIPSSVSEDELKNFFSKY---GKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168 (247)
Q Consensus 106 ~~~l~v~~l~~~~t~~~l~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l 168 (247)
..+|+|.++. +++.++|+.+|..| .....|..+-|. .|=|.|.+.+.|.+|+..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4579999986 58889999999998 134677777764 5889999999999999864
No 179
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.23 E-value=0.0041 Score=56.08 Aligned_cols=77 Identities=12% Similarity=0.127 Sum_probs=61.8
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcc---cCCcEE
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSK-YGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMID---MAGTQV 178 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~---~~g~~l 178 (247)
...++.|+|.||-.-.|.-+|+.++.. .|.|++..| | +-|..|||.|.+.++|...+.+|||.. -+++.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHH--H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 345678999999999999999999995 556666633 1 235589999999999999999999987 456778
Q ss_pred EEeeccc
Q 025858 179 SLIGWSP 185 (247)
Q Consensus 179 ~v~~a~~ 185 (247)
.+.++..
T Consensus 515 ~adf~~~ 521 (718)
T KOG2416|consen 515 IADFVRA 521 (718)
T ss_pred Eeeecch
Confidence 8877654
No 180
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.87 E-value=0.12 Score=37.14 Aligned_cols=68 Identities=21% Similarity=0.205 Sum_probs=49.6
Q ss_pred cccEEEcCCCCCCCHHHHHHHHHhc-CCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCC
Q 025858 106 TKKIFVGGIPSSVSEDELKNFFSKY-GKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAG 175 (247)
Q Consensus 106 ~~~l~v~~l~~~~t~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g 175 (247)
...+.+...|..++-++|..+.+.+ ..|..+++++|... .+--++++|.+.++|..-....||+.+..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p--nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP--NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC--ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3344555555556667777666665 36788899988432 44468999999999999999999998765
No 181
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.85 E-value=0.058 Score=40.19 Aligned_cols=75 Identities=15% Similarity=0.131 Sum_probs=56.6
Q ss_pred CCCCccccEEEcCCCCCCC-HH---HHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCc
Q 025858 101 SKDFKTKKIFVGGIPSSVS-ED---ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGT 176 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~~~t-~~---~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~ 176 (247)
..+++-.+|.|+=|..++. .+ .+...++.||+|.+|.+.- +.-|.|.|.+..+|-+|+.+++. ..-|.
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgt 152 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGT 152 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCc
Confidence 3456677888887766553 23 4455667899999998743 33699999999999999998765 67788
Q ss_pred EEEEeec
Q 025858 177 QVSLIGW 183 (247)
Q Consensus 177 ~l~v~~a 183 (247)
.+.+.|-
T Consensus 153 m~qCsWq 159 (166)
T PF15023_consen 153 MFQCSWQ 159 (166)
T ss_pred eEEeecc
Confidence 8888874
No 182
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.69 E-value=0.0097 Score=51.73 Aligned_cols=79 Identities=15% Similarity=0.265 Sum_probs=60.7
Q ss_pred ccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcc-cCCcEEEEeeccc
Q 025858 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMID-MAGTQVSLIGWSP 185 (247)
Q Consensus 107 ~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~-~~g~~l~v~~a~~ 185 (247)
.++|++||.+.++.++|..+|...-.-..-.++. ..||+||.+.+..-|.+|++.++|.. +.|+.+.+...-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4689999999999999999997652111111111 24699999999999999999999865 8999999988776
Q ss_pred Cccccc
Q 025858 186 VNQLLK 191 (247)
Q Consensus 186 ~~~~~~ 191 (247)
+....+
T Consensus 76 kkqrsr 81 (584)
T KOG2193|consen 76 KKQRSR 81 (584)
T ss_pred HHHHhh
Confidence 555443
No 183
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=95.62 E-value=0.027 Score=38.64 Aligned_cols=65 Identities=20% Similarity=0.405 Sum_probs=47.9
Q ss_pred EEEEecCHHHHHHHHhcc-C--ccCCeEEEEeeecCCCCC-----CCCCCccccEEEcCCCCCCCHHHHHHHH
Q 025858 63 GFITYADPSVVDKVIEDT-H--IINGKQVEIKRTIPKGSG-----QSKDFKTKKIFVGGIPSSVSEDELKNFF 127 (247)
Q Consensus 63 afV~f~~~~~a~~a~~~~-~--~l~g~~i~v~~~~~~~~~-----~~~~~~~~~l~v~~l~~~~t~~~l~~~f 127 (247)
|.|+|.+..-|++.++.+ + .+++..+.|..+.-.... -......++|-|.+||....+++|++.+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 689999999999999832 2 677777777665332221 1234567899999999999999998654
No 184
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.55 E-value=0.2 Score=36.03 Aligned_cols=66 Identities=17% Similarity=0.131 Sum_probs=46.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCcc
Q 025858 16 ASPGKIFIGGLPKDTTYATFNKHFGKYG-DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHII 83 (247)
Q Consensus 16 ~~~~~l~v~nLp~~~te~~l~~~f~~~G-~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l 83 (247)
..+..+.+...|.-++-++|..+.+.+- .|..+++++|. ..++=.++++|.+.++|..... ||+.+
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPF 79 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCcc
Confidence 3444555554555555566766666554 67889999875 3467789999999999999987 55533
No 185
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.54 E-value=0.006 Score=49.62 Aligned_cols=62 Identities=13% Similarity=0.279 Sum_probs=48.5
Q ss_pred HHHHHHhc-cCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeeecC
Q 025858 33 ATFNKHFG-KYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIP 95 (247)
Q Consensus 33 ~~l~~~f~-~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~~~ 95 (247)
++|...|+ +||+|+++.|..+- ...-.|-++|.|..+++|++|+. ++..+.|++|......-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 34444444 79999988665543 44568889999999999999999 78899999998887643
No 186
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.40 E-value=0.1 Score=33.23 Aligned_cols=53 Identities=13% Similarity=0.256 Sum_probs=43.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccC---CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh
Q 025858 18 PGKIFIGGLPKDTTYATFNKHFGKY---GDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78 (247)
Q Consensus 18 ~~~l~v~nLp~~~te~~l~~~f~~~---G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 78 (247)
...|+|+++. +++.++|+.+|..| .....|.++-|. .|=|.|.+.+.|.+|+.
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALV 60 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHH
Confidence 4579999995 47888999999998 134578888886 58899999999999986
No 187
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.29 E-value=0.18 Score=44.43 Aligned_cols=101 Identities=17% Similarity=0.187 Sum_probs=70.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCC------eE
Q 025858 17 SPGKIFIGGLPKDTTYATFNKHFGKYG-DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIING------KQ 87 (247)
Q Consensus 17 ~~~~l~v~nLp~~~te~~l~~~f~~~G-~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g------~~ 87 (247)
+++.|+|-.+|..+|-.||..|...+- .|.++++++|. -.++=.++|.|.+.++|....+ ||..++. +-
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e~Chl 150 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPEVCHL 150 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCCCCccceeE
Confidence 388999999999999999999998765 78999999974 3455679999999999999998 6664432 12
Q ss_pred EEE-----eeecCC---CCCCCCCCccccEEEcCCCCCCC
Q 025858 88 VEI-----KRTIPK---GSGQSKDFKTKKIFVGGIPSSVS 119 (247)
Q Consensus 88 i~v-----~~~~~~---~~~~~~~~~~~~l~v~~l~~~~t 119 (247)
+.| ..+.+. +.....+.+.+.|.+-.++.+++
T Consensus 151 l~V~~ve~~~s~d~as~~~~~~tELPTCpVCLERMD~s~~ 190 (493)
T KOG0804|consen 151 LYVDRVEVTESEDGASEPPTGLTELPTCPVCLERMDSSTT 190 (493)
T ss_pred EEEEEEEEEecccCCCCCCCCcccCCCcchhHhhcCcccc
Confidence 222 222111 11122344666677777766653
No 188
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.20 E-value=0.0072 Score=51.06 Aligned_cols=81 Identities=15% Similarity=0.306 Sum_probs=61.4
Q ss_pred ccccEEEcCCCCCCCHHHHH---HHHHhcCCeEEEEEEecCC--CC-CceeEEEEEEcCHHHHHHHHHcCCCcccCCcEE
Q 025858 105 KTKKIFVGGIPSSVSEDELK---NFFSKYGKVLEHQIIRDHE--TN-RSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQV 178 (247)
Q Consensus 105 ~~~~l~v~~l~~~~t~~~l~---~~f~~~G~i~~v~i~~~~~--~~-~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l 178 (247)
...-+||-+|+..+..+.+. +.|.+||.|..+.+..+.. .+ ..---++|+|...++|..||...+|..+.|+.+
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 34567888898877555444 5788999999999887652 11 111238999999999999999999999999997
Q ss_pred EEeeccc
Q 025858 179 SLIGWSP 185 (247)
Q Consensus 179 ~v~~a~~ 185 (247)
+..++..
T Consensus 156 ka~~gtt 162 (327)
T KOG2068|consen 156 KASLGTT 162 (327)
T ss_pred HHhhCCC
Confidence 7766554
No 189
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.18 E-value=0.069 Score=39.80 Aligned_cols=73 Identities=11% Similarity=0.156 Sum_probs=53.5
Q ss_pred CCCCCeEEEcCCCCCCC----HHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHhc-cCccCCeEEE
Q 025858 15 GASPGKIFIGGLPKDTT----YATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED-THIINGKQVE 89 (247)
Q Consensus 15 ~~~~~~l~v~nLp~~~t----e~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~l~g~~i~ 89 (247)
+.+-.||-|+=|..++. -..|...++.||+|.+|.+.-. -.|.|.|+|..+|.+|+.. .....|..++
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-------qsavVvF~d~~SAC~Av~Af~s~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-------QSAVVVFKDITSACKAVSAFQSRAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-------ceEEEEehhhHHHHHHHHhhcCCCCCceEE
Confidence 44556788876666643 3345556678999999977533 3699999999999999983 3467788888
Q ss_pred Eeeec
Q 025858 90 IKRTI 94 (247)
Q Consensus 90 v~~~~ 94 (247)
+.|..
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 88864
No 190
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.13 E-value=0.02 Score=44.84 Aligned_cols=72 Identities=13% Similarity=0.127 Sum_probs=46.9
Q ss_pred ccccEEEcCCCCCCCHHHHHHHHHh-cCCe---EEEEEEecCCCC--CceeEEEEEEcCHHHHHHHHHcCCCcccCCc
Q 025858 105 KTKKIFVGGIPSSVSEDELKNFFSK-YGKV---LEHQIIRDHETN--RSRGFGFVIFDSEEVVDEMLSKGNMIDMAGT 176 (247)
Q Consensus 105 ~~~~l~v~~l~~~~t~~~l~~~f~~-~G~i---~~v~i~~~~~~~--~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~ 176 (247)
...+|.|++||+.+|++++.+.+++ ++.- ..+.-..+...- ..-.-|||.|.+.+++......++|..+.+.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 4568999999999999999997777 6654 233322222211 1234699999999999999999999876544
No 191
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.09 E-value=0.029 Score=43.92 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=40.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcc-CCCe---eEEE--EeecCCCCCcceEEEEEecCHHHHHHHHh--ccC
Q 025858 16 ASPGKIFIGGLPKDTTYATFNKHFGK-YGDI---TDSV--IMKDRYTGQPRGFGFITYADPSVVDKVIE--DTH 81 (247)
Q Consensus 16 ~~~~~l~v~nLp~~~te~~l~~~f~~-~G~i---~~i~--~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~ 81 (247)
.....|-|++||+++||+++.+.+.. ++.- ..+. ............-|||.|.+.+++..... +++
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~ 78 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGH 78 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTE
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCc
Confidence 34558999999999999998887776 6654 3333 21222122335679999999999888777 454
No 192
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.81 E-value=0.091 Score=43.75 Aligned_cols=62 Identities=13% Similarity=0.142 Sum_probs=48.9
Q ss_pred HHHHHHHhccCCCeeEEEEeecCCCCCc-ceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeee
Q 025858 32 YATFNKHFGKYGDITDSVIMKDRYTGQP-RGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRT 93 (247)
Q Consensus 32 e~~l~~~f~~~G~i~~i~~~~~~~~~~~-~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~ 93 (247)
|+++++-.++||.|..|.+...+..... .--.||+|...++|.+|+- ++..++|+.++..+-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 3457788889999999999887644322 2347999999999999997 888999998876553
No 193
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=94.75 E-value=0.031 Score=45.56 Aligned_cols=59 Identities=19% Similarity=0.415 Sum_probs=53.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh
Q 025858 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78 (247)
Q Consensus 19 ~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 78 (247)
..|+|.||+.-+.-+.+...|+.||+|....+..|. .++..+-++|.|...-.|.+|+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~r 90 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAAR 90 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHH
Confidence 579999999999999999999999999887777776 68888899999999999999887
No 194
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.59 E-value=0.1 Score=41.09 Aligned_cols=62 Identities=18% Similarity=0.202 Sum_probs=46.0
Q ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCC--CcccCCcEEEEeecccC
Q 025858 119 SEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN--MIDMAGTQVSLIGWSPV 186 (247)
Q Consensus 119 t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~--~~~~~g~~l~v~~a~~~ 186 (247)
..+.|+++|..++.+.....++. -+-..|.|.+.++|.+|...|+ +..+.|..+++.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999999998888876653 3368999999999999999999 99999999999888543
No 195
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.28 E-value=0.046 Score=48.29 Aligned_cols=79 Identities=14% Similarity=0.238 Sum_probs=63.6
Q ss_pred CCCCCCCeEEEcCCCCCC-CHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEE
Q 025858 13 GDGASPGKIFIGGLPKDT-TYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEI 90 (247)
Q Consensus 13 ~~~~~~~~l~v~nLp~~~-te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v 90 (247)
.-..+++.|-+.-.|+.+ |-++|...|.+||.|..|.+-.. .-.|.|+|.+..+|-.|.. .+..|+++.|+|
T Consensus 367 ~~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl 440 (526)
T KOG2135|consen 367 HAVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKL 440 (526)
T ss_pred chhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhccccceecCceeEE
Confidence 334556667777777765 45689999999999999988554 2369999999999977777 888999999999
Q ss_pred eeecCCC
Q 025858 91 KRTIPKG 97 (247)
Q Consensus 91 ~~~~~~~ 97 (247)
.|..+.+
T Consensus 441 ~whnps~ 447 (526)
T KOG2135|consen 441 FWHNPSP 447 (526)
T ss_pred EEecCCc
Confidence 9998755
No 196
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.27 E-value=0.14 Score=34.65 Aligned_cols=53 Identities=15% Similarity=0.345 Sum_probs=38.6
Q ss_pred cEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCC
Q 025858 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN 169 (247)
Q Consensus 108 ~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~ 169 (247)
..+|. .|.+|...||.++|+.||.|. |..+-| ..|||...+++.|..|+..+.
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 45555 999999999999999999964 444433 279999999999998887654
No 197
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.77 E-value=0.043 Score=48.46 Aligned_cols=70 Identities=14% Similarity=0.227 Sum_probs=55.4
Q ss_pred EcCCCCCC-CHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeecccCc
Q 025858 111 VGGIPSSV-SEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWSPVN 187 (247)
Q Consensus 111 v~~l~~~~-t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~~ 187 (247)
+.-.|... +-++|...|.+||+|+.|.+-.. .-.|.|+|.+..+|-.|-. .++-.|.++.|+|.|-.+..
T Consensus 377 lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 377 LEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 33334333 45899999999999999988333 3479999999999988876 48999999999999977644
No 198
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.57 E-value=0.052 Score=51.21 Aligned_cols=76 Identities=17% Similarity=0.159 Sum_probs=62.7
Q ss_pred EcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcc--cCCcEEEEeecccCcc
Q 025858 111 VGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMID--MAGTQVSLIGWSPVNQ 188 (247)
Q Consensus 111 v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~--~~g~~l~v~~a~~~~~ 188 (247)
+.|.+-..+-.-|..+|++||.+.+.+.+++-. .|.|+|.+.+.|..|+.+|+|++ ..|-+.+|.+|+.-+.
T Consensus 303 ~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~ 376 (1007)
T KOG4574|consen 303 LENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPM 376 (1007)
T ss_pred hhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccc
Confidence 334444556678899999999999999988744 79999999999999999999987 5688899999988776
Q ss_pred cccc
Q 025858 189 LLKG 192 (247)
Q Consensus 189 ~~~~ 192 (247)
..+.
T Consensus 377 ~ep~ 380 (1007)
T KOG4574|consen 377 YEPP 380 (1007)
T ss_pred ccCC
Confidence 6554
No 199
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.57 E-value=0.53 Score=41.61 Aligned_cols=69 Identities=14% Similarity=0.281 Sum_probs=58.9
Q ss_pred ccccEEEcCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCC
Q 025858 105 KTKKIFVGGIPSSVSEDELKNFFSKYG-KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAG 175 (247)
Q Consensus 105 ~~~~l~v~~l~~~~t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g 175 (247)
..+.|+|-.+|..++-.||..|+..+- .|..+++++|... .+=-++++|.+.++|...-..+||+.|..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 378899999999999999999999875 6889999997321 23358999999999999999999998765
No 200
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.47 E-value=0.39 Score=31.06 Aligned_cols=55 Identities=16% Similarity=0.341 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 117 SVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 117 ~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
.++-++++..+..|+- .+ |..| . .|| ||.|.+.++|+++....+|+.+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~--I~~d-~----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DR--IRDD-R----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ce--EEec-C----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 5788999999999964 33 3333 2 234 99999999999999999999888777654
No 201
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.43 E-value=0.19 Score=42.07 Aligned_cols=76 Identities=20% Similarity=0.260 Sum_probs=56.4
Q ss_pred cEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcE-EEEeecccC
Q 025858 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQ-VSLIGWSPV 186 (247)
Q Consensus 108 ~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~-l~v~~a~~~ 186 (247)
=|.|.+.|+. .-..|..+|++||.|++.... ..-.+-.|.|.++-+|.+||.. ||+.|.|.. |=|+.+..+
T Consensus 199 WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 199 WVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred eEEEeccCcc-chhHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCH
Confidence 4666666654 446788899999999887653 2234789999999999999996 999998875 556665555
Q ss_pred ccccc
Q 025858 187 NQLLK 191 (247)
Q Consensus 187 ~~~~~ 191 (247)
.....
T Consensus 271 svi~~ 275 (350)
T KOG4285|consen 271 SVING 275 (350)
T ss_pred HHhcc
Confidence 44443
No 202
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.01 E-value=0.25 Score=44.69 Aligned_cols=71 Identities=10% Similarity=0.220 Sum_probs=57.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcc--CCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh----ccCccCCeE
Q 025858 14 DGASPGKIFIGGLPKDTTYATFNKHFGK--YGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE----DTHIINGKQ 87 (247)
Q Consensus 14 ~~~~~~~l~v~nLp~~~te~~l~~~f~~--~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~----~~~~l~g~~ 87 (247)
....-|.|.++.||..+-+|+|+.+|.. +-+++++.+--+. -=||+|++..||+.|.+ ..+++-|++
T Consensus 171 p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKp 243 (684)
T KOG2591|consen 171 PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKP 243 (684)
T ss_pred cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcc
Confidence 3445667889999999999999999975 7788888886554 25899999999999987 556888888
Q ss_pred EEEe
Q 025858 88 VEIK 91 (247)
Q Consensus 88 i~v~ 91 (247)
|...
T Consensus 244 ImAR 247 (684)
T KOG2591|consen 244 IMAR 247 (684)
T ss_pred hhhh
Confidence 7543
No 203
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.00 E-value=0.044 Score=46.41 Aligned_cols=110 Identities=23% Similarity=0.338 Sum_probs=71.0
Q ss_pred CCeEEEcCCCCCCCHHHHH---HHhccCCCeeEEEEeecCC--CC-CcceEEEEEecCHHHHHHHHh--ccCccCCeEEE
Q 025858 18 PGKIFIGGLPKDTTYATFN---KHFGKYGDITDSVIMKDRY--TG-QPRGFGFITYADPSVVDKVIE--DTHIINGKQVE 89 (247)
Q Consensus 18 ~~~l~v~nLp~~~te~~l~---~~f~~~G~i~~i~~~~~~~--~~-~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~ 89 (247)
.+-+||-+|+.....+++. +.|.+||.|..|.+.++.. .+ .....++|+|...++|..|+. ++..++|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 3567888998887666554 5888999999998877652 11 112348999999999999999 77788888876
Q ss_pred EeeecCCCCC----CCCCCccccEEEcCCCC---CCCHHHHHHHH
Q 025858 90 IKRTIPKGSG----QSKDFKTKKIFVGGIPS---SVSEDELKNFF 127 (247)
Q Consensus 90 v~~~~~~~~~----~~~~~~~~~l~v~~l~~---~~t~~~l~~~f 127 (247)
......+.-. ........++|+..+-. .++.++++..-
T Consensus 157 a~~gttkycs~~l~~~~c~~~~cmylhe~~~~~Ds~~k~e~~~~~ 201 (327)
T KOG2068|consen 157 ASLGTTKYCSFYLRNDICQNPDCMYLHEIGDQEDSFTKDEMKSAK 201 (327)
T ss_pred HhhCCCcchhHHhhhhcccCccccccccccccccccchHHHHHHh
Confidence 6655443221 11112233566554433 45555555433
No 204
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.65 E-value=0.37 Score=31.87 Aligned_cols=58 Identities=17% Similarity=0.249 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHhcC-----CeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeec
Q 025858 117 SVSEDELKNFFSKYG-----KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGW 183 (247)
Q Consensus 117 ~~t~~~l~~~f~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 183 (247)
.++..+|..++...+ .|-.+++... |+||+-.. +.|..+++.|++..+.|++++|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 577888888887764 4557777443 89999864 5889999999999999999999865
No 205
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=92.45 E-value=0.17 Score=46.13 Aligned_cols=78 Identities=15% Similarity=0.231 Sum_probs=58.3
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhc-cCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHhccC-----cc
Q 025858 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFG-KYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH-----II 83 (247)
Q Consensus 10 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~-~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-----~l 83 (247)
+++.....++.|+|.||=.-.|.-+|+.++. ..|.|++.+|-+ -|..|||.|.+.++|......+| .-
T Consensus 436 pSPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk------IKShCyV~yss~eEA~atr~AlhnV~WP~s 509 (718)
T KOG2416|consen 436 PSPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK------IKSHCYVSYSSVEEAAATREALHNVQWPPS 509 (718)
T ss_pred CCCCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHH------hhcceeEecccHHHHHHHHHHHhccccCCC
Confidence 4555677899999999999999999999999 566777773322 23579999999999988666333 33
Q ss_pred CCeEEEEeee
Q 025858 84 NGKQVEIKRT 93 (247)
Q Consensus 84 ~g~~i~v~~~ 93 (247)
+++.|.+.+.
T Consensus 510 NPK~L~adf~ 519 (718)
T KOG2416|consen 510 NPKHLIADFV 519 (718)
T ss_pred CCceeEeeec
Confidence 5566666654
No 206
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.53 E-value=1.4 Score=37.06 Aligned_cols=64 Identities=17% Similarity=0.334 Sum_probs=49.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeE
Q 025858 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQ 87 (247)
Q Consensus 17 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~ 87 (247)
....|-|-+.|+..+ .-|...|++||.|.+.... ..-.+-+|.|.+..+|.+|+. ++..|+|..
T Consensus 196 ~D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALskng~ii~g~v 260 (350)
T KOG4285|consen 196 ADTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSKNGTIIDGDV 260 (350)
T ss_pred ccceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhhcCeeeccce
Confidence 467788888988744 4578899999998754333 233478999999999999999 788777754
No 207
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=89.96 E-value=0.57 Score=35.33 Aligned_cols=80 Identities=20% Similarity=0.211 Sum_probs=57.8
Q ss_pred eEEEEEecCHHHHHHHHhcc-CccCCeEEEEeeecCCCCCCCCCC--ccccEEEcCCCCC-CCHHHHHHHHHhcCCeEEE
Q 025858 61 GFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQSKDF--KTKKIFVGGIPSS-VSEDELKNFFSKYGKVLEH 136 (247)
Q Consensus 61 g~afV~f~~~~~a~~a~~~~-~~l~g~~i~v~~~~~~~~~~~~~~--~~~~l~v~~l~~~-~t~~~l~~~f~~~G~i~~v 136 (247)
++..+.|.+.+++.+++..+ ..+++..+.+..-.+......... ..-=|.|.+||.. ++++-++.+.+..|++.++
T Consensus 56 ~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~v 135 (153)
T PF14111_consen 56 NLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEV 135 (153)
T ss_pred CeEEEEEEeccceeEEEecccccccccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEE
Confidence 68999999999999999844 467777777765543322211111 2223778899986 6889999999999999988
Q ss_pred EEEe
Q 025858 137 QIIR 140 (247)
Q Consensus 137 ~i~~ 140 (247)
....
T Consensus 136 D~~t 139 (153)
T PF14111_consen 136 DENT 139 (153)
T ss_pred EcCC
Confidence 7643
No 208
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=89.75 E-value=1.2 Score=35.10 Aligned_cols=60 Identities=15% Similarity=0.222 Sum_probs=42.4
Q ss_pred CHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--c--cCccCCeEEEEeeecCC
Q 025858 31 TYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--D--THIINGKQVEIKRTIPK 96 (247)
Q Consensus 31 te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~--~~~l~g~~i~v~~~~~~ 96 (247)
..+.|+++|..++.+..+..++.- +-..|.|.+.++|.+|.. . +..+.|..+++.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 457899999999988887776543 458999999999999998 4 56899999999988544
No 209
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=89.10 E-value=0.75 Score=41.78 Aligned_cols=71 Identities=14% Similarity=0.206 Sum_probs=53.8
Q ss_pred ccccEEEcCCCCCCCHHHHHHHHHh--cCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCC--cccCCcEEEE
Q 025858 105 KTKKIFVGGIPSSVSEDELKNFFSK--YGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNM--IDMAGTQVSL 180 (247)
Q Consensus 105 ~~~~l~v~~l~~~~t~~~l~~~f~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~--~~~~g~~l~v 180 (247)
..+.|.++-||....+|+++.+|.. +-++.+|.+-... -=||+|++..||+.|...|.. +.|.|+.|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 3456778899999999999999976 5677888775542 258999999999999776543 4477776655
Q ss_pred ee
Q 025858 181 IG 182 (247)
Q Consensus 181 ~~ 182 (247)
+.
T Consensus 247 RI 248 (684)
T KOG2591|consen 247 RI 248 (684)
T ss_pred hh
Confidence 43
No 210
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=88.14 E-value=1.3 Score=37.07 Aligned_cols=159 Identities=11% Similarity=0.199 Sum_probs=104.6
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCC-------CCCcceEEEEEecCHHHHHHHHh----
Q 025858 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRY-------TGQPRGFGFITYADPSVVDKVIE---- 78 (247)
Q Consensus 10 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~-------~~~~~g~afV~f~~~~~a~~a~~---- 78 (247)
|++.|.-.+|.|.+.|+..+++--.+...|.+||+|++|.++.+.. .........+.|-+.+.+.....
T Consensus 7 PkGdD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQ 86 (309)
T PF10567_consen 7 PKGDDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQ 86 (309)
T ss_pred CCCCccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHH
Confidence 5677888999999999999999999999999999999999998761 12345688999999988877654
Q ss_pred c----cCccCCeEEEEeeecC-----CC-CCC----------------CCCCccccEEEcCCCCCCCHHHH-HH---HHH
Q 025858 79 D----THIINGKQVEIKRTIP-----KG-SGQ----------------SKDFKTKKIFVGGIPSSVSEDEL-KN---FFS 128 (247)
Q Consensus 79 ~----~~~l~g~~i~v~~~~~-----~~-~~~----------------~~~~~~~~l~v~~l~~~~t~~~l-~~---~f~ 128 (247)
. ...+.-..+.+.+..- .. ... ......|+|.|.= ...+.++++ .+ ++.
T Consensus 87 rLsEfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF-~~~~~~~dl~~~kL~fL~ 165 (309)
T PF10567_consen 87 RLSEFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEF-KDPVDKDDLIEKKLPFLK 165 (309)
T ss_pred HHHHHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEe-cCccchhHHHHHhhhhhc
Confidence 1 1245555566554321 00 000 1112355676663 344433333 22 222
Q ss_pred hcC----CeEEEEEEecCCC--CCceeEEEEEEcCHHHHHHHHHcCC
Q 025858 129 KYG----KVLEHQIIRDHET--NRSRGFGFVIFDSEEVVDEMLSKGN 169 (247)
Q Consensus 129 ~~G----~i~~v~i~~~~~~--~~~~g~afV~f~~~~~a~~ai~~l~ 169 (247)
.-+ .+++|.++..... .-++.||.+.|-+..-|...+.-+.
T Consensus 166 ~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 166 NSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred cCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 223 4677877755332 3467899999999998888876544
No 211
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.71 E-value=2 Score=37.62 Aligned_cols=64 Identities=14% Similarity=0.201 Sum_probs=53.8
Q ss_pred CCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh
Q 025858 8 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYG-DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78 (247)
Q Consensus 8 ~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G-~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 78 (247)
..+..++..=.+.|-|.++|.....+||...|+.|+ .--+|+++.|. .||..|.+...|..|+.
T Consensus 381 p~~ll~e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 381 PPPLLRESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred CCCCCCcccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 445556666788999999999999999999999997 44567788775 79999999999999997
No 212
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=86.98 E-value=0.48 Score=43.76 Aligned_cols=72 Identities=19% Similarity=0.126 Sum_probs=62.5
Q ss_pred CCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEe
Q 025858 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLI 181 (247)
Q Consensus 102 ~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 181 (247)
...+..++||+|+...+..+.++.+...+|-|..+.... |||..|.....+.+|+..++...+.|..+.+.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 345567899999999999999999999999988776432 89999999999999999999999999987775
Q ss_pred e
Q 025858 182 G 182 (247)
Q Consensus 182 ~ 182 (247)
.
T Consensus 107 ~ 107 (668)
T KOG2253|consen 107 V 107 (668)
T ss_pred c
Confidence 4
No 213
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=83.37 E-value=6.6 Score=25.35 Aligned_cols=52 Identities=25% Similarity=0.406 Sum_probs=38.3
Q ss_pred CCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEE
Q 025858 29 DTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVE 89 (247)
Q Consensus 29 ~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~ 89 (247)
.++-++++..+..|+- .++..|+ + | -||.|.+..+|++|.. ++..+.+..+.
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 4678899999999973 3444554 2 4 4899999999999998 56666655544
No 214
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=82.78 E-value=1.1 Score=41.55 Aligned_cols=75 Identities=13% Similarity=0.133 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCe
Q 025858 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGK 86 (247)
Q Consensus 9 ~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~ 86 (247)
.|....-.+..+|||+|+...+..+-++.+...+|-|.+.+... |+|..|.......+|+. ....++|.
T Consensus 31 qp~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~ 101 (668)
T KOG2253|consen 31 QPVFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQ 101 (668)
T ss_pred cccccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcc
Confidence 34455556777999999999999999999999999876554332 89999999999999998 55577777
Q ss_pred EEEEee
Q 025858 87 QVEIKR 92 (247)
Q Consensus 87 ~i~v~~ 92 (247)
.+.++.
T Consensus 102 kl~~~~ 107 (668)
T KOG2253|consen 102 KLIENV 107 (668)
T ss_pred hhhccc
Confidence 776654
No 215
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=80.80 E-value=7.1 Score=32.71 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=36.7
Q ss_pred ccEEEcCCCCCCCHHHHHHHHHhcCCe-EEEEEEecCCCCCceeEEEEEEcCHH
Q 025858 107 KKIFVGGIPSSVSEDELKNFFSKYGKV-LEHQIIRDHETNRSRGFGFVIFDSEE 159 (247)
Q Consensus 107 ~~l~v~~l~~~~t~~~l~~~f~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~ 159 (247)
.-|+++||+.++...||+..+.+.|.+ .++.+ ..+.|-||+.|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCcc
Confidence 359999999999999999999998752 23333 236778999997754
No 216
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=78.16 E-value=6 Score=25.69 Aligned_cols=62 Identities=15% Similarity=0.277 Sum_probs=47.4
Q ss_pred HHHHHHhccCC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHhccCccCCeEEEEeeecC
Q 025858 33 ATFNKHFGKYG-DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIP 95 (247)
Q Consensus 33 ~~l~~~f~~~G-~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~l~g~~i~v~~~~~ 95 (247)
++|++.|...| ++.++.-+..+.++..-...||+.+...+...++ +...+.+..|.|.+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~-~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY-KIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee-ehHhhCCeEEEEecCCC
Confidence 56888899998 8888888888767777788999988776633333 55578899999887654
No 217
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=77.27 E-value=5.5 Score=28.64 Aligned_cols=115 Identities=19% Similarity=0.282 Sum_probs=63.2
Q ss_pred CCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEEeeecCCCCCCCCCC
Q 025858 26 LPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQSKDF 104 (247)
Q Consensus 26 Lp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v~~~~~~~~~~~~~~ 104 (247)
||+-++ .|-++|+.-|+|.++..+.. +. ..+|..-+. ....++|. |++.......+......
T Consensus 11 lPPYTn--KLSDYfeSPGKI~svItvtq-------------yp-dndal~~~~G~lE~vDg~-i~IGs~q~~~sV~i~gT 73 (145)
T TIGR02542 11 LPPYTN--KLSDYFESPGKIQSVITVTQ-------------YP-DNDALLYVHGTLEQVDGN-IRIGSGQTPASVRIQGT 73 (145)
T ss_pred cCCccc--hhhHHhcCCCceEEEEEEec-------------cC-CchhhheeeeehhhccCc-EEEccCCCcccEEEecC
Confidence 777654 58899999999998766532 22 123333222 22245565 66654432221111111
Q ss_pred ccccEEEcCCCCCCCHHHHHHHHHh---cCCeEEEEEEecCCCCCceeEEEEEEcCH
Q 025858 105 KTKKIFVGGIPSSVSEDELKNFFSK---YGKVLEHQIIRDHETNRSRGFGFVIFDSE 158 (247)
Q Consensus 105 ~~~~l~v~~l~~~~t~~~l~~~f~~---~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 158 (247)
++.. -|.--|..+|-.+++++|.. |-.|.+-.+.+|--...+-..||..|...
T Consensus 74 Psgn-nv~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 74 PSGN-NVIFPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred CCCC-ceecCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 1100 12224668899999999986 54555555555522223445788888654
No 218
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=76.97 E-value=1.9 Score=41.32 Aligned_cols=70 Identities=9% Similarity=0.207 Sum_probs=54.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccC--ccCCeEEEEeeecC
Q 025858 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTH--IINGKQVEIKRTIP 95 (247)
Q Consensus 20 ~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~--~l~g~~i~v~~~~~ 95 (247)
+..+-|.+-+.+-..|..+|.+||.+.+++.+++-+ .|.|+|...+.|..|+. .+. ...|-+.+|..+..
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 344556666778888999999999999999988863 69999999999999998 333 45566777777654
No 219
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=75.12 E-value=9.7 Score=24.70 Aligned_cols=63 Identities=16% Similarity=0.182 Sum_probs=46.2
Q ss_pred HHHHHHHHhcC-CeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeecccC
Q 025858 121 DELKNFFSKYG-KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWSPV 186 (247)
Q Consensus 121 ~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~ 186 (247)
++|.+.|...| .|..+.-+....+..+...-||+.+...+... .++=..+++..|+|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCC
Confidence 56888888887 78888877777667777888999876555333 34557789999999876543
No 220
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=73.27 E-value=8.9 Score=24.93 Aligned_cols=61 Identities=15% Similarity=0.204 Sum_probs=46.4
Q ss_pred HHHHHHhccCC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHhccCccCCeEEEEeeec
Q 025858 33 ATFNKHFGKYG-DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTI 94 (247)
Q Consensus 33 ~~l~~~f~~~G-~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~l~g~~i~v~~~~ 94 (247)
++|.+.|...| ++..+.-+..+.++..-..-+|+-....+... +-+.+.|+|+.+.|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~-Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE-ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc-eEeehhhCCeeEEEecCc
Confidence 46888899999 88888888888777777888888876654444 225667889999888654
No 221
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=72.94 E-value=9 Score=24.90 Aligned_cols=61 Identities=15% Similarity=0.124 Sum_probs=45.3
Q ss_pred HHHHHHHHhcC-CeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeecc
Q 025858 121 DELKNFFSKYG-KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWS 184 (247)
Q Consensus 121 ~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 184 (247)
++|++.|+..| .+..+.-+..+.++.+...-+|+.....+-.. .++=+.++|+.+.|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46888999988 78888888877777777788888876543333 355577899999887654
No 222
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=70.65 E-value=10 Score=31.83 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=36.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCe-eEEEEeecCCCCCcceEEEEEecCHH
Q 025858 18 PGKIFIGGLPKDTTYATFNKHFGKYGDI-TDSVIMKDRYTGQPRGFGFITYADPS 71 (247)
Q Consensus 18 ~~~l~v~nLp~~~te~~l~~~f~~~G~i-~~i~~~~~~~~~~~~g~afV~f~~~~ 71 (247)
..-|+++|||.++.-.||+..+.+-|.+ .++.+ . -..|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw--k----g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW--K----GHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee--e----cCCcceeEecCCcc
Confidence 3459999999999999999999988743 33333 2 23567999998754
No 223
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=68.62 E-value=13 Score=31.44 Aligned_cols=83 Identities=14% Similarity=0.290 Sum_probs=61.9
Q ss_pred CCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-------CCCceeEEEEEEcCHHHHHHH----HHcCCC
Q 025858 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHE-------TNRSRGFGFVIFDSEEVVDEM----LSKGNM 170 (247)
Q Consensus 102 ~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~-------~~~~~g~afV~f~~~~~a~~a----i~~l~~ 170 (247)
....+|.|.+.|+..+++--.+...|-+||.|++|.++.+.. ..+......+.|-+++.+-.. ++.|+.
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 345678899999999999999999999999999999998751 112345788999998876443 333443
Q ss_pred --cccCCcEEEEeecc
Q 025858 171 --IDMAGTQVSLIGWS 184 (247)
Q Consensus 171 --~~~~g~~l~v~~a~ 184 (247)
..+....|.+.+..
T Consensus 91 fK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHhcCCcceeEEEEE
Confidence 34777788887665
No 224
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=68.36 E-value=26 Score=23.80 Aligned_cols=57 Identities=12% Similarity=0.165 Sum_probs=43.1
Q ss_pred cEEEcCCCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHc
Q 025858 108 KIFVGGIPSSVSEDELKNFFSK-YG-KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167 (247)
Q Consensus 108 ~l~v~~l~~~~t~~~l~~~f~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~ 167 (247)
.-|+--++...+..+|++.++. || .|.+|..+.-+. ...-|+|.+...++|......
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHh
Confidence 4566668889999999999998 66 678887765532 233699999988888777554
No 225
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.74 E-value=11 Score=33.13 Aligned_cols=56 Identities=18% Similarity=0.278 Sum_probs=43.4
Q ss_pred cccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHc
Q 025858 106 TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167 (247)
Q Consensus 106 ~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~ 167 (247)
...|-|.+.|.....+||...|+.|+. ..++|..-..+ .||..|.+...|..|+..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvDdt-----halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVDDT-----HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhc-CCceeEEeecc-----eeEEeecchHHHHHHhhc
Confidence 446889999999999999999999975 33333333222 799999999999999974
No 226
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=66.25 E-value=30 Score=22.61 Aligned_cols=57 Identities=26% Similarity=0.414 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHhccCC-----CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeee
Q 025858 28 KDTTYATFNKHFGKYG-----DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRT 93 (247)
Q Consensus 28 ~~~te~~l~~~f~~~G-----~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~ 93 (247)
..++..+|..++..-+ .|-.|.+..+ |+||+-... .|..+++ ++..+.|++++|+.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3478888888887653 3555666543 788887655 5555665 667899999998764
No 227
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=64.83 E-value=28 Score=23.61 Aligned_cols=55 Identities=4% Similarity=0.092 Sum_probs=42.3
Q ss_pred EEEcCCCCCCCHHHHHHHhcc-CC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh
Q 025858 21 IFIGGLPKDTTYATFNKHFGK-YG-DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78 (247)
Q Consensus 21 l~v~nLp~~~te~~l~~~f~~-~G-~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 78 (247)
-|.=.++.+++..+|++.++. || .|.+|..+.-+ ....-|+|.+...++|.....
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHH
Confidence 334457889999999999997 77 78888877655 234569999999988887653
No 228
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=63.44 E-value=39 Score=22.50 Aligned_cols=57 Identities=14% Similarity=0.196 Sum_probs=42.3
Q ss_pred cEEEcCCCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHc
Q 025858 108 KIFVGGIPSSVSEDELKNFFSK-YG-KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167 (247)
Q Consensus 108 ~l~v~~l~~~~t~~~l~~~f~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~ 167 (247)
.-|+-.++...+..+|++.++. || .|.+|..+.-+. ...-|||.+..-++|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHh
Confidence 4567778899999999999998 66 677777665532 233699999887777766443
No 229
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=63.22 E-value=13 Score=31.85 Aligned_cols=56 Identities=9% Similarity=0.105 Sum_probs=36.0
Q ss_pred EEEEecCHHHHHHHHhccCccCCeEEEEeeecCCCCCCCCCCccccEEEcCCCCCCCHHHHHHHHH
Q 025858 63 GFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFS 128 (247)
Q Consensus 63 afV~f~~~~~a~~a~~~~~~l~g~~i~v~~~~~~~~~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~ 128 (247)
|||+|++..+|..|++.....+.+.+.+..+.++. -|.=.||..+..+..++..+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~APeP~----------DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPAPEPD----------DIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeCCCcc----------cccccccCCChHHHHHHHHHH
Confidence 79999999999999985444455666666654322 244456655555555554443
No 230
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=63.08 E-value=3.5 Score=32.13 Aligned_cols=75 Identities=19% Similarity=0.193 Sum_probs=51.2
Q ss_pred cEEEcCCCCCC-----CHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCc-EEEEe
Q 025858 108 KIFVGGIPSSV-----SEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGT-QVSLI 181 (247)
Q Consensus 108 ~l~v~~l~~~~-----t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~-~l~v~ 181 (247)
++.+-+++..+ .......+|.+|-+....++++ +.+...|.|.+.+.|..|...++++.|.|+ .++.-
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 34445555443 1234455666666655555443 345678899999999999999999999999 78887
Q ss_pred ecccCcc
Q 025858 182 GWSPVNQ 188 (247)
Q Consensus 182 ~a~~~~~ 188 (247)
++.+...
T Consensus 86 faQ~~~~ 92 (193)
T KOG4019|consen 86 FAQPGHP 92 (193)
T ss_pred EccCCCc
Confidence 7765433
No 231
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=59.43 E-value=24 Score=22.40 Aligned_cols=18 Identities=22% Similarity=0.460 Sum_probs=14.8
Q ss_pred HHHHHHhccCCCeeEEEE
Q 025858 33 ATFNKHFGKYGDITDSVI 50 (247)
Q Consensus 33 ~~l~~~f~~~G~i~~i~~ 50 (247)
++||++|+..|+|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999875554
No 232
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=58.86 E-value=43 Score=22.32 Aligned_cols=54 Identities=6% Similarity=0.129 Sum_probs=41.3
Q ss_pred EEEcCCCCCCCHHHHHHHhcc-CC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHH
Q 025858 21 IFIGGLPKDTTYATFNKHFGK-YG-DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI 77 (247)
Q Consensus 21 l~v~nLp~~~te~~l~~~f~~-~G-~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~ 77 (247)
-|+=.++.++|..+|++.++. || .|.++..+.-+ ....-|||.+...++|....
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~---~~~KKA~VtL~~g~~a~~va 71 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP---RGEKKAYVKLAEEYAAEEIA 71 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCceEEEEEECCCCcHHHHH
Confidence 344457899999999999997 67 77888777654 23456999999888887654
No 233
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=53.62 E-value=8.1 Score=26.50 Aligned_cols=26 Identities=15% Similarity=0.400 Sum_probs=22.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhc
Q 025858 15 GASPGKIFIGGLPKDTTYATFNKHFG 40 (247)
Q Consensus 15 ~~~~~~l~v~nLp~~~te~~l~~~f~ 40 (247)
..+.++|.|.|||..++|++|++.++
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEE
Confidence 35678999999999999999998765
No 234
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.26 E-value=1e+02 Score=28.77 Aligned_cols=79 Identities=19% Similarity=0.220 Sum_probs=58.8
Q ss_pred CccccEEEcCCCCC-CCHHHHHHHHHhc----CCeEEEEEEecCCC----------CC----------------------
Q 025858 104 FKTKKIFVGGIPSS-VSEDELKNFFSKY----GKVLEHQIIRDHET----------NR---------------------- 146 (247)
Q Consensus 104 ~~~~~l~v~~l~~~-~t~~~l~~~f~~~----G~i~~v~i~~~~~~----------~~---------------------- 146 (247)
..+++|-|-||.+. +.-.+|.-+|..| |.|.+|.|.+.... |.
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 45678999999874 6778999988876 68999886543211 11
Q ss_pred --------------c-eeEEEEEEcCHHHHHHHHHcCCCcccCCcE--EEEee
Q 025858 147 --------------S-RGFGFVIFDSEEVVDEMLSKGNMIDMAGTQ--VSLIG 182 (247)
Q Consensus 147 --------------~-~g~afV~f~~~~~a~~ai~~l~~~~~~g~~--l~v~~ 182 (247)
. --||.|+|.+.+.|...-..+.|..+.... +-+++
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 1 136999999999999999999999987664 44444
No 235
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=46.37 E-value=37 Score=24.55 Aligned_cols=36 Identities=19% Similarity=0.431 Sum_probs=22.8
Q ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcC
Q 025858 119 SEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDS 157 (247)
Q Consensus 119 t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 157 (247)
+.+.|++.|..|..+ +++.+.+.. .+.|++.|+|..
T Consensus 30 ~~~~l~~~l~~f~p~-kv~~l~~~~--gh~g~aiv~F~~ 65 (116)
T PF03468_consen 30 SNEELLDKLAEFNPL-KVKPLYGKQ--GHTGFAIVEFNK 65 (116)
T ss_dssp -SHHHHHHHHH---S-EEEEEEETT--EEEEEEEEE--S
T ss_pred CHHHHHHHHHhcCCc-eeEECcCCC--CCcEEEEEEECC
Confidence 447899999999875 465666543 588999999965
No 236
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.84 E-value=1.2e+02 Score=23.07 Aligned_cols=56 Identities=13% Similarity=0.214 Sum_probs=42.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcc---CCCeeEEEEeecCCCC---------Ccce-EEEEEecCHHHH
Q 025858 18 PGKIFIGGLPKDTTYATFNKHFGK---YGDITDSVIMKDRYTG---------QPRG-FGFITYADPSVV 73 (247)
Q Consensus 18 ~~~l~v~nLp~~~te~~l~~~f~~---~G~i~~i~~~~~~~~~---------~~~g-~afV~f~~~~~a 73 (247)
...|++..+...++|++.++..+. .+++.+|.+-+.+.+. ..+. |-+|.|++....
T Consensus 87 ~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~l 155 (161)
T COG5353 87 DGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKEL 155 (161)
T ss_pred CCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchhh
Confidence 378999999999999999999885 4678888876665332 2233 888999886544
No 237
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=45.60 E-value=16 Score=20.50 Aligned_cols=17 Identities=18% Similarity=0.262 Sum_probs=10.6
Q ss_pred CCCCHHHHHHHhccCCC
Q 025858 28 KDTTYATFNKHFGKYGD 44 (247)
Q Consensus 28 ~~~te~~l~~~f~~~G~ 44 (247)
.++++++|++.|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 36889999999998753
No 238
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=43.12 E-value=22 Score=29.05 Aligned_cols=35 Identities=11% Similarity=0.323 Sum_probs=29.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeE
Q 025858 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITD 47 (247)
Q Consensus 13 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~ 47 (247)
.......++|+-|+|..+|++-|.++.++.|-+..
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~ 69 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQE 69 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhh
Confidence 44556788999999999999999999999985543
No 239
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=43.04 E-value=30 Score=27.07 Aligned_cols=55 Identities=7% Similarity=-0.020 Sum_probs=37.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcc-CCCeeEEEEeecCCCC--CcceEEEEEecCHHHHHHHHh
Q 025858 18 PGKIFIGGLPKDTTYATFNKHFGK-YGDITDSVIMKDRYTG--QPRGFGFITYADPSVVDKVIE 78 (247)
Q Consensus 18 ~~~l~v~nLp~~~te~~l~~~f~~-~G~i~~i~~~~~~~~~--~~~g~afV~f~~~~~a~~a~~ 78 (247)
.++++.+ .|+++|.++..= -|.+..+.+.+.. .+ ..+|-.||+|.+.+.|..+++
T Consensus 111 ~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 111 ERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred Hhhhhcc-----CCHHHHHHHHHHhcccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhh
Confidence 4556665 455555444331 1677777765544 33 678999999999999998776
No 240
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=40.72 E-value=29 Score=29.62 Aligned_cols=33 Identities=15% Similarity=0.034 Sum_probs=24.2
Q ss_pred EEEEEcCHHHHHHHHHcCCCcccCCcEEEEeeccc
Q 025858 151 GFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWSP 185 (247)
Q Consensus 151 afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 185 (247)
|||+|++..+|..|++.+.... ++.+++..|.+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCC
Confidence 7999999999999999644433 35556666644
No 241
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=37.80 E-value=16 Score=32.25 Aligned_cols=61 Identities=11% Similarity=0.157 Sum_probs=49.9
Q ss_pred CCeEEEcCCCCCCCHH--------HHHHHhcc--CCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh
Q 025858 18 PGKIFIGGLPKDTTYA--------TFNKHFGK--YGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78 (247)
Q Consensus 18 ~~~l~v~nLp~~~te~--------~l~~~f~~--~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 78 (247)
.+.+|+.+.+..-+.+ ++...|.. .+.+..++..++.....++|..|++|+..+.++++..
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4557777776665544 88999998 6788889998888677889999999999999999885
No 242
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=37.73 E-value=63 Score=21.70 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=21.9
Q ss_pred ceeEEEEEEcCHHHHHHHHHcCCCcc
Q 025858 147 SRGFGFVIFDSEEVVDEMLSKGNMID 172 (247)
Q Consensus 147 ~~g~afV~f~~~~~a~~ai~~l~~~~ 172 (247)
.+||-||+=.+.++...|++.+.+..
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 78999999999999999998766543
No 243
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=35.59 E-value=35 Score=27.89 Aligned_cols=35 Identities=29% Similarity=0.464 Sum_probs=29.4
Q ss_pred CCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEE
Q 025858 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136 (247)
Q Consensus 102 ~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v 136 (247)
......++|+-|+|..+|++.|.++.++.|-+..+
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 34567899999999999999999999999855443
No 244
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=33.19 E-value=52 Score=28.87 Aligned_cols=63 Identities=13% Similarity=0.251 Sum_probs=41.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCC-eeEEEEeecCCC--CCcceEEEEEecCHHHHHHHHh
Q 025858 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGD-ITDSVIMKDRYT--GQPRGFGFITYADPSVVDKVIE 78 (247)
Q Consensus 16 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~-i~~i~~~~~~~~--~~~~g~afV~f~~~~~a~~a~~ 78 (247)
.....|-|.+||+..+++++.+-...+-. +....+...... ..-.+.|+|.|...++......
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~ 70 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRR 70 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHh
Confidence 34567889999999999999887776542 222222211101 1235779999999999666655
No 245
>PRK11901 hypothetical protein; Reviewed
Probab=32.32 E-value=1.3e+02 Score=26.06 Aligned_cols=53 Identities=11% Similarity=0.161 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEE--EEcCHHHHHHHHHcCCC
Q 025858 116 SSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFV--IFDSEEVVDEMLSKGNM 170 (247)
Q Consensus 116 ~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV--~f~~~~~a~~ai~~l~~ 170 (247)
....++.|..+..+++ +..+.+.+-...|+ ..|..| .|.+.++|..|+..|-.
T Consensus 252 Aas~~~~L~~f~~~~~-L~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 252 SASRSDTLNAYAKKQN-LSHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred cCCCHHHHHHHHHHcC-cCceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHhCCH
Confidence 3456888888888875 34455544433332 345443 79999999999998754
No 246
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=31.94 E-value=22 Score=31.41 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=50.4
Q ss_pred ccccEEEcCCCCCCCH--------HHHHHHHHh--cCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHH
Q 025858 105 KTKKIFVGGIPSSVSE--------DELKNFFSK--YGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166 (247)
Q Consensus 105 ~~~~l~v~~l~~~~t~--------~~l~~~f~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~ 166 (247)
..+.+|+.+.+.+-.. +++...|.+ ++.+..++..++......+|-.|++|...+.++++..
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3456777777765544 499999998 6788888888887667788999999999999999985
No 247
>PHA01632 hypothetical protein
Probab=31.68 E-value=44 Score=20.64 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=16.8
Q ss_pred EEEcCCCCCCCHHHHHHHhcc
Q 025858 21 IFIGGLPKDTTYATFNKHFGK 41 (247)
Q Consensus 21 l~v~nLp~~~te~~l~~~f~~ 41 (247)
|.|..+|..-||++|+..+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 345589999999999987753
No 248
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=31.24 E-value=38 Score=23.25 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=33.9
Q ss_pred EEcCCCCCCCHHHHHHHhcc-CC-CeeEEEEeecCC----CCC------cceEEEEEecCHHH
Q 025858 22 FIGGLPKDTTYATFNKHFGK-YG-DITDSVIMKDRY----TGQ------PRGFGFITYADPSV 72 (247)
Q Consensus 22 ~v~nLp~~~te~~l~~~f~~-~G-~i~~i~~~~~~~----~~~------~~g~afV~f~~~~~ 72 (247)
+.=.++.++|..+|+++++. || .|.+|..+.-+. .|. ...-|+|++...+.
T Consensus 23 ~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~~~ 85 (91)
T PF00276_consen 23 YTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEGDK 85 (91)
T ss_dssp EEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTTSC
T ss_pred EEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCCCc
Confidence 34457899999999999986 77 677777654431 111 12468888776643
No 249
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=30.91 E-value=50 Score=27.72 Aligned_cols=36 Identities=25% Similarity=0.524 Sum_probs=28.2
Q ss_pred CCCCeEEEcCCCCC------------CCHHHHHHHhccCCCeeEEEEe
Q 025858 16 ASPGKIFIGGLPKD------------TTYATFNKHFGKYGDITDSVIM 51 (247)
Q Consensus 16 ~~~~~l~v~nLp~~------------~te~~l~~~f~~~G~i~~i~~~ 51 (247)
+...||++.+||.. -+|+-|+..|+.||.|..|.+.
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 34557888888864 3577899999999999888774
No 250
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=30.90 E-value=6.6 Score=35.94 Aligned_cols=72 Identities=15% Similarity=0.111 Sum_probs=50.6
Q ss_pred cccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcE
Q 025858 106 TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQ 177 (247)
Q Consensus 106 ~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~ 177 (247)
.++|++.|+++..+-++|..+|..+--+..+.+-.+.....-...+.|.|.---....|+-+||+..+....
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 457999999999999999999999866666655433222233456788887666666666667766655443
No 251
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=30.24 E-value=55 Score=27.49 Aligned_cols=78 Identities=19% Similarity=0.366 Sum_probs=48.5
Q ss_pred EEEEEecCHHHHHHHHh-ccCccCCeEEEEeee--------------cCCCC-------------CCCCCCccccEEEcC
Q 025858 62 FGFITYADPSVVDKVIE-DTHIINGKQVEIKRT--------------IPKGS-------------GQSKDFKTKKIFVGG 113 (247)
Q Consensus 62 ~afV~f~~~~~a~~a~~-~~~~l~g~~i~v~~~--------------~~~~~-------------~~~~~~~~~~l~v~~ 113 (247)
.-||.|+-.-...-.++ -..-++|..|.+.-- .|... .........+|++.+
T Consensus 77 id~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~eakidfpsrhdwdd~fm~~kdmdemkpgerpdti~la~ 156 (445)
T KOG2891|consen 77 IDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAEAKIDFPSRHDWDDFFMDAKDMDEMKPGERPDTIHLAG 156 (445)
T ss_pred cceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHhhcCCCCcccchHHHHhhhhhhhccCCCCCCCceeecC
Confidence 56888876655444444 344577777765321 01000 011223345899999
Q ss_pred CCCCC------------CHHHHHHHHHhcCCeEEEEEE
Q 025858 114 IPSSV------------SEDELKNFFSKYGKVLEHQII 139 (247)
Q Consensus 114 l~~~~------------t~~~l~~~f~~~G~i~~v~i~ 139 (247)
||-.| +++.|+..|+.||.|..|.|+
T Consensus 157 ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 157 IPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 88543 568899999999999988765
No 252
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=29.35 E-value=52 Score=28.90 Aligned_cols=70 Identities=17% Similarity=0.250 Sum_probs=48.7
Q ss_pred cccEEEcCCCCCCCHHHHHHHHHhcCC-eEEEEEEecCCC--CCceeEEEEEEcCHHHHHHHHHcCCCcccCC
Q 025858 106 TKKIFVGGIPSSVSEDELKNFFSKYGK-VLEHQIIRDHET--NRSRGFGFVIFDSEEVVDEMLSKGNMIDMAG 175 (247)
Q Consensus 106 ~~~l~v~~l~~~~t~~~l~~~f~~~G~-i~~v~i~~~~~~--~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g 175 (247)
..++.|.+||+..+++++.+...++-. +........... ..-.+.|+|.|...++...-....+|..+..
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 457899999999999999988887642 333333322111 1224678999999999887777788777543
No 253
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=27.88 E-value=1.5e+02 Score=20.04 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=20.8
Q ss_pred CeEEEEEEecCCCCCceeEEEEEEcC
Q 025858 132 KVLEHQIIRDHETNRSRGFGFVIFDS 157 (247)
Q Consensus 132 ~i~~v~i~~~~~~~~~~g~afV~f~~ 157 (247)
+|.++++.+-...++-+++|-|.|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 46788887776668999999999975
No 254
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.35 E-value=13 Score=33.08 Aligned_cols=75 Identities=7% Similarity=-0.213 Sum_probs=56.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeeec
Q 025858 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTI 94 (247)
Q Consensus 19 ~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~~ 94 (247)
..-|+..||...++.++.-+|+.||-|..+.+.+.-+.+..+-.+|+.-... ++..++. .-+.+.|..+++..+.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~-~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA-NGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeecc-CcccccCHHHHhhhhhhhhhhhcCc
Confidence 4457889999999999999999999998888877776777778888877653 4555665 3346677777766553
No 255
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=25.72 E-value=3e+02 Score=20.84 Aligned_cols=55 Identities=11% Similarity=0.171 Sum_probs=38.8
Q ss_pred cEEEcCCCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHH
Q 025858 108 KIFVGGIPSSVSEDELKNFFSK-YG-KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165 (247)
Q Consensus 108 ~l~v~~l~~~~t~~~l~~~f~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai 165 (247)
.-|+--++...+..+|++.++. |+ .|..|..+..+. | .--|||.+....+|....
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g--~KKA~V~L~~~~~aidva 139 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-G--LKKAYIRLSPDVDALDVA 139 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-C--ceEEEEEECCCCcHHHHH
Confidence 4667778889999999999998 65 577776655432 2 235899997766655443
No 256
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=25.09 E-value=2.1e+02 Score=21.65 Aligned_cols=43 Identities=9% Similarity=0.121 Sum_probs=28.5
Q ss_pred HHHHHHHhcc----CC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHhc
Q 025858 32 YATFNKHFGK----YG-DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79 (247)
Q Consensus 32 e~~l~~~f~~----~G-~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 79 (247)
|+.+.+.... .| .|.++.+.. ..+||.||+....+++..++++
T Consensus 18 E~~V~~~L~~~~~~~~~~i~~i~vp~-----~fpGYVfVe~~~~~~~~~~i~~ 65 (153)
T PRK08559 18 ERNVALMLAMRAKKENLPIYAILAPP-----ELKGYVLVEAESKGAVEEAIRG 65 (153)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEccC-----CCCcEEEEEEEChHHHHHHHhc
Confidence 5555544432 23 255555443 2689999999988999999874
No 257
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=24.64 E-value=76 Score=20.53 Aligned_cols=27 Identities=7% Similarity=-0.048 Sum_probs=21.2
Q ss_pred EEEEEEcCHHHHHHHHHcCCCcccCCc
Q 025858 150 FGFVIFDSEEVVDEMLSKGNMIDMAGT 176 (247)
Q Consensus 150 ~afV~f~~~~~a~~ai~~l~~~~~~g~ 176 (247)
+.++.|.|..+|.+|-+.|....+..+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 689999999999999887665555443
No 258
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=24.40 E-value=1.7e+02 Score=20.28 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=20.4
Q ss_pred CeEEEEEEecCCCCCceeEEEEEEcC
Q 025858 132 KVLEHQIIRDHETNRSRGFGFVIFDS 157 (247)
Q Consensus 132 ~i~~v~i~~~~~~~~~~g~afV~f~~ 157 (247)
+|.+|++.+-...|+-+++|-|.|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 46777777665668889999999975
No 259
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=24.30 E-value=1.1e+02 Score=24.08 Aligned_cols=58 Identities=17% Similarity=0.221 Sum_probs=37.2
Q ss_pred ccccEEEcCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCC-CCceeEEEEEEcCHHHHHHHHHc
Q 025858 105 KTKKIFVGGIPSSVSEDELKNFFSK-YGKVLEHQIIRDHET-NRSRGFGFVIFDSEEVVDEMLSK 167 (247)
Q Consensus 105 ~~~~l~v~~l~~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~-~~~~g~afV~f~~~~~a~~ai~~ 167 (247)
..+++|.. .|+++|.++.+= -|.+..+.+-+.... ...+|-.||.|.+.+.|...+..
T Consensus 110 ~~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 110 KERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred HHhhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 34566655 455555444321 178888876554221 24678999999999999887764
No 260
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=24.16 E-value=1.6e+02 Score=20.55 Aligned_cols=44 Identities=9% Similarity=0.102 Sum_probs=26.1
Q ss_pred HHHHhccCCC---eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh
Q 025858 35 FNKHFGKYGD---ITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78 (247)
Q Consensus 35 l~~~f~~~G~---i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 78 (247)
+...|++||- +....+..-...........|+|.+.+.|..+..
T Consensus 25 ~~~a~~~~Ggr~LvRGG~v~~lEG~w~ptr~vviEFps~~~ar~~y~ 71 (96)
T COG5470 25 AKPAIEKFGGRYLVRGGEVETLEGEWRPTRNVVIEFPSLEAARDCYN 71 (96)
T ss_pred hHHHHHHhCCeeEeeCCCeeeccCCCCcccEEEEEcCCHHHHHHHhc
Confidence 4567777772 1111121111122335689999999999998875
No 261
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.07 E-value=3.6e+02 Score=25.36 Aligned_cols=72 Identities=14% Similarity=0.224 Sum_probs=53.2
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhccC----CCeeEEEEeecCC----------CCC---------------------
Q 025858 15 GASPGKIFIGGLPKD-TTYATFNKHFGKY----GDITDSVIMKDRY----------TGQ--------------------- 58 (247)
Q Consensus 15 ~~~~~~l~v~nLp~~-~te~~l~~~f~~~----G~i~~i~~~~~~~----------~~~--------------------- 58 (247)
...+++|-|-|+..+ +.-++|.-+|..| |.|.+|.|..... +|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 567889999999876 7788998888865 5898888764321 121
Q ss_pred ----------------cceEEEEEecCHHHHHHHHh--ccCccCCe
Q 025858 59 ----------------PRGFGFITYADPSVVDKVIE--DTHIINGK 86 (247)
Q Consensus 59 ----------------~~g~afV~f~~~~~a~~a~~--~~~~l~g~ 86 (247)
..=||.|+|.+.+.|..... .|..+...
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS 296 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS 296 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc
Confidence 23489999999999999887 66655543
No 262
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=23.88 E-value=25 Score=29.06 Aligned_cols=14 Identities=57% Similarity=1.130 Sum_probs=11.9
Q ss_pred hhhheeecCeeeec
Q 025858 233 KIFLIIIGGGCYRY 246 (247)
Q Consensus 233 ~~~~~~~~~~~~~~ 246 (247)
++-+|++||++|.|
T Consensus 73 ~~~liatGGga~kf 86 (342)
T COG5146 73 KITLIATGGGAYKF 86 (342)
T ss_pred eeeEEecCCcchhh
Confidence 57789999999976
No 263
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=23.23 E-value=2.5e+02 Score=19.10 Aligned_cols=43 Identities=7% Similarity=-0.028 Sum_probs=31.9
Q ss_pred HHHHHHHhccCC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh
Q 025858 32 YATFNKHFGKYG-DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78 (247)
Q Consensus 32 e~~l~~~f~~~G-~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 78 (247)
.+.++++++.+| ++.++.+.. |.--....+++.|.+.|.++.-
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~----G~yD~v~i~eaPD~~~a~~~~l 65 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTL----GEYDFVVIVEAPDDETAAAASL 65 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEec----CCCCEEEEEEcCCHHHHHHHHH
Confidence 345777888887 788877763 5556788999999998887653
No 264
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=22.80 E-value=2.6e+02 Score=19.22 Aligned_cols=34 Identities=12% Similarity=0.256 Sum_probs=26.1
Q ss_pred EEEcCCCCCCCHHHHHHHhcc-CC-CeeEEEEeecC
Q 025858 21 IFIGGLPKDTTYATFNKHFGK-YG-DITDSVIMKDR 54 (247)
Q Consensus 21 l~v~nLp~~~te~~l~~~f~~-~G-~i~~i~~~~~~ 54 (247)
.++=.++.++|..+|++.++. || +|.+|..+.-+
T Consensus 22 ~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~ 57 (92)
T PRK05738 22 KYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVK 57 (92)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeC
Confidence 444457889999999999997 77 67777766543
No 265
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.91 E-value=15 Score=32.84 Aligned_cols=76 Identities=7% Similarity=-0.198 Sum_probs=56.9
Q ss_pred ccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeec
Q 025858 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGW 183 (247)
Q Consensus 107 ~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 183 (247)
.+.++..+|...+++++.-+|+.||-|..+.+.+..+.+..+-.+||.-.. .+|..+|+.+.-..+.|..+++..+
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~ 79 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVS 79 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcC
Confidence 345677889999999999999999999988877665656666678887754 5566677665556677777776554
No 266
>PF14893 PNMA: PNMA
Probab=21.86 E-value=69 Score=27.81 Aligned_cols=53 Identities=11% Similarity=0.298 Sum_probs=34.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhc----cCCCee--EEEEeecCCCCCcceEEEEEecCH
Q 025858 14 DGASPGKIFIGGLPKDTTYATFNKHFG----KYGDIT--DSVIMKDRYTGQPRGFGFITYADP 70 (247)
Q Consensus 14 ~~~~~~~l~v~nLp~~~te~~l~~~f~----~~G~i~--~i~~~~~~~~~~~~g~afV~f~~~ 70 (247)
+....+.|.|.+||.++++++|.+.+. ..|... .-.+.++ ....-|+|+|...
T Consensus 14 ~~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~----~~~~aalve~~e~ 72 (331)
T PF14893_consen 14 GVDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRRE----ENAKAALVEFAED 72 (331)
T ss_pred CcChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhh----cccceeeeecccc
Confidence 345677899999999999999988765 456432 1111111 1234688888654
No 267
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=21.31 E-value=1e+02 Score=17.08 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=14.9
Q ss_pred CCCHHHHHHHHHhcCCe
Q 025858 117 SVSEDELKNFFSKYGKV 133 (247)
Q Consensus 117 ~~t~~~l~~~f~~~G~i 133 (247)
.|++++|++.+..+|.+
T Consensus 3 tWs~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIP 19 (38)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 68999999999999864
No 268
>KOG1687 consensus NADH-ubiquinone oxidoreductase, NUFS7/PSST/20 kDa subunit [Energy production and conversion]
Probab=20.35 E-value=1.7e+02 Score=21.88 Aligned_cols=36 Identities=25% Similarity=0.241 Sum_probs=21.7
Q ss_pred ehhHHHHHHHHhhhcCceeeeeeeeEEehhHHHHHhhhheeecCeeeec
Q 025858 198 YNVLLLFLFALRIYQPRIVYSIDTVYVQNSILVFLKIFLIIIGGGCYRY 246 (247)
Q Consensus 198 ~~~~~~~~~~~~~~~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (247)
.+-..+.+...+.+.|.+-|-.+. | +|+.|||-|||
T Consensus 82 TnKMAPalrkvYdQMPEpr~VisM----------G---sCangGGyyhy 117 (168)
T KOG1687|consen 82 TNKMAPALRKVYDQMPEPRWVISM----------G---SCANGGGYYHY 117 (168)
T ss_pred hhhhcHHHHHHHhhCCCCeeEEEe----------c---ccccCCceEEE
Confidence 333345555556666766665332 2 67788888887
Done!