Query 025858
Match_columns 247
No_of_seqs 226 out of 2110
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 19:10:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025858.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025858hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 2.7E-38 9.1E-43 251.2 21.1 181 10-191 5-188 (196)
2 4f02_A Polyadenylate-binding p 100.0 8.6E-39 2.9E-43 258.1 16.6 171 15-189 12-184 (213)
3 2cjk_A Nuclear polyadenylated 100.0 7.4E-39 2.5E-43 248.1 12.6 166 17-187 2-167 (167)
4 3md3_A Nuclear and cytoplasmic 100.0 2.5E-37 8.5E-42 238.9 19.6 164 19-185 1-166 (166)
5 1fxl_A Paraneoplastic encephal 100.0 8.3E-37 2.9E-41 236.1 20.9 163 17-183 1-167 (167)
6 1b7f_A Protein (SXL-lethal pro 100.0 4.7E-37 1.6E-41 238.1 19.4 163 17-183 2-168 (168)
7 2qfj_A FBP-interacting repress 100.0 1.4E-36 4.8E-41 244.8 17.4 175 16-190 26-209 (216)
8 3nmr_A Cugbp ELAV-like family 100.0 5.2E-35 1.8E-39 227.9 19.4 164 17-184 2-175 (175)
9 1fje_B Nucleolin RBD12, protei 100.0 1.9E-35 6.4E-40 230.9 12.3 168 12-187 7-175 (175)
10 2g4b_A Splicing factor U2AF 65 100.0 2.3E-34 7.8E-39 223.9 17.6 159 16-184 2-172 (172)
11 3smz_A Protein raver-1, ribonu 100.0 9.1E-34 3.1E-38 237.9 19.2 173 17-191 94-269 (284)
12 2yh0_A Splicing factor U2AF 65 100.0 1.2E-33 4.2E-38 224.6 18.7 167 16-188 2-196 (198)
13 3pgw_A U1-A; protein-RNA compl 100.0 9.4E-33 3.2E-37 231.5 21.8 164 13-184 4-281 (282)
14 3tyt_A Heterogeneous nuclear r 100.0 2.4E-33 8.1E-38 224.7 16.3 161 16-183 2-204 (205)
15 2ghp_A U4/U6 snRNA-associated 100.0 2.8E-33 9.6E-38 235.8 17.5 169 17-187 116-292 (292)
16 2adc_A Polypyrimidine tract-bi 100.0 9.5E-33 3.2E-37 225.0 17.2 164 13-186 29-228 (229)
17 2ghp_A U4/U6 snRNA-associated 100.0 1.4E-32 4.9E-37 231.5 16.6 165 11-189 34-200 (292)
18 3sde_A Paraspeckle component 1 100.0 4.9E-32 1.7E-36 225.0 17.8 161 10-187 14-180 (261)
19 3smz_A Protein raver-1, ribonu 100.0 9.1E-32 3.1E-36 225.7 19.6 156 16-188 20-177 (284)
20 1qm9_A Polypyrimidine tract-bi 100.0 1.6E-32 5.6E-37 218.4 14.0 160 17-186 2-197 (198)
21 2kn4_A Immunoglobulin G-bindin 99.9 6.2E-25 2.1E-29 168.7 16.0 142 47-190 2-154 (158)
22 4f25_A Polyadenylate-binding p 99.9 2.6E-23 8.9E-28 151.3 10.3 104 17-122 4-113 (115)
23 2i2y_A Fusion protein consists 99.9 7.1E-23 2.4E-27 155.9 11.5 126 56-187 9-149 (150)
24 4fxv_A ELAV-like protein 1; RN 99.9 1.4E-22 4.9E-27 143.4 10.3 82 104-185 17-98 (99)
25 4fxv_A ELAV-like protein 1; RN 99.9 4.9E-22 1.7E-26 140.7 10.9 95 1-95 1-98 (99)
26 2lxi_A RNA-binding protein 10; 99.9 2E-22 6.8E-27 140.5 6.6 88 106-193 1-90 (91)
27 2lea_A Serine/arginine-rich sp 99.9 1.3E-21 4.3E-26 146.3 8.2 124 62-190 6-131 (135)
28 3s8s_A Histone-lysine N-methyl 99.9 2.6E-21 9E-26 139.4 9.5 86 104-189 4-89 (110)
29 2lxi_A RNA-binding protein 10; 99.8 2.2E-21 7.5E-26 135.2 6.7 81 18-98 1-85 (91)
30 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.3E-20 4.4E-25 129.9 10.1 83 104-186 4-86 (87)
31 2do4_A Squamous cell carcinoma 99.8 5.2E-20 1.8E-24 130.3 13.4 95 3-98 2-98 (100)
32 3md1_A Nuclear and cytoplasmic 99.8 1.8E-20 6.3E-25 128.0 10.4 81 107-187 2-82 (83)
33 2dgo_A Cytotoxic granule-assoc 99.8 4.9E-20 1.7E-24 133.8 12.9 91 101-191 10-100 (115)
34 1whw_A Hypothetical protein ri 99.8 3.4E-20 1.2E-24 131.0 11.4 88 103-190 5-92 (99)
35 2cqg_A TDP-43, TAR DNA-binding 99.8 1E-19 3.5E-24 129.5 13.8 90 10-99 7-96 (103)
36 2do4_A Squamous cell carcinoma 99.8 5.8E-20 2E-24 130.1 12.4 87 101-188 12-98 (100)
37 2cq0_A Eukaryotic translation 99.8 4.2E-20 1.5E-24 131.5 11.2 90 101-190 10-99 (103)
38 2cqc_A Arginine/serine-rich sp 99.8 6.2E-20 2.1E-24 128.6 11.9 85 101-185 10-94 (95)
39 1x5u_A Splicing factor 3B subu 99.8 4.2E-20 1.4E-24 131.9 11.1 90 101-190 10-99 (105)
40 2cpz_A CUG triplet repeat RNA- 99.8 9.3E-20 3.2E-24 132.3 13.1 90 10-99 17-108 (115)
41 2dgs_A DAZ-associated protein 99.8 4.3E-20 1.5E-24 130.5 10.9 88 102-190 6-93 (99)
42 1p27_B RNA-binding protein 8A; 99.8 4.8E-20 1.6E-24 131.9 11.1 87 102-188 19-105 (106)
43 3p5t_L Cleavage and polyadenyl 99.8 7.8E-21 2.7E-25 132.0 6.6 82 107-188 2-85 (90)
44 2cpz_A CUG triplet repeat RNA- 99.8 4.3E-20 1.5E-24 134.1 10.7 90 101-190 20-109 (115)
45 3s8s_A Histone-lysine N-methyl 99.8 6.4E-20 2.2E-24 132.2 11.4 81 15-95 3-85 (110)
46 2dgs_A DAZ-associated protein 99.8 9.8E-20 3.4E-24 128.6 12.1 89 11-99 3-92 (99)
47 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.8E-20 9.6E-25 127.6 9.1 82 103-184 4-85 (85)
48 2lkz_A RNA-binding protein 5; 99.8 6.8E-21 2.3E-25 133.5 5.9 82 104-185 7-94 (95)
49 3s7r_A Heterogeneous nuclear r 99.8 7.8E-20 2.7E-24 126.0 11.1 81 13-93 6-87 (87)
50 2dgo_A Cytotoxic granule-assoc 99.8 1.9E-19 6.4E-24 130.7 13.6 92 8-99 5-98 (115)
51 3ns6_A Eukaryotic translation 99.8 5.3E-21 1.8E-25 135.6 5.1 85 104-188 4-95 (100)
52 2x1f_A MRNA 3'-END-processing 99.8 4.2E-20 1.4E-24 129.8 9.6 85 106-190 2-86 (96)
53 2dnz_A Probable RNA-binding pr 99.8 5.3E-20 1.8E-24 129.0 10.0 87 104-190 3-89 (95)
54 1rk8_A CG8781-PA, CG8781-PA pr 99.8 4.6E-20 1.6E-24 142.5 10.6 126 65-190 11-156 (165)
55 2jrs_A RNA-binding protein 39; 99.8 7.4E-20 2.5E-24 131.5 10.9 87 101-187 21-107 (108)
56 2dnh_A Bruno-like 5, RNA bindi 99.8 1.2E-19 4E-24 129.6 11.8 88 102-190 11-101 (105)
57 2cph_A RNA binding motif prote 99.8 7.7E-20 2.6E-24 130.9 10.9 90 101-190 10-101 (107)
58 1x4h_A RNA-binding protein 28; 99.8 1.6E-19 5.3E-24 130.2 12.6 91 9-99 6-104 (111)
59 1x4h_A RNA-binding protein 28; 99.8 9.8E-20 3.3E-24 131.3 11.5 90 102-191 11-106 (111)
60 1x5t_A Splicing factor 3B subu 99.8 4.1E-20 1.4E-24 129.8 9.1 88 104-191 3-91 (96)
61 2e5h_A Zinc finger CCHC-type a 99.8 9E-20 3.1E-24 127.5 10.8 84 101-184 11-94 (94)
62 2cqc_A Arginine/serine-rich sp 99.8 1.4E-19 4.9E-24 126.7 11.6 88 8-95 5-94 (95)
63 2d9p_A Polyadenylate-binding p 99.8 1.1E-19 3.6E-24 129.4 11.1 89 101-191 10-98 (103)
64 2cqd_A RNA-binding region cont 99.8 2.1E-19 7E-24 130.7 12.9 95 3-98 2-98 (116)
65 2dnm_A SRP46 splicing factor; 99.8 4.4E-20 1.5E-24 131.4 8.9 89 101-189 8-96 (103)
66 4f25_A Polyadenylate-binding p 99.8 6.3E-20 2.1E-24 133.3 9.9 83 106-190 5-87 (115)
67 2cq0_A Eukaryotic translation 99.8 1.9E-19 6.5E-24 128.1 12.1 88 12-99 9-98 (103)
68 2lkz_A RNA-binding protein 5; 99.8 4.4E-20 1.5E-24 129.4 8.6 82 14-95 5-94 (95)
69 2cpf_A RNA binding motif prote 99.8 9.3E-20 3.2E-24 128.5 10.3 87 104-190 3-92 (98)
70 2la6_A RNA-binding protein FUS 99.8 1.1E-19 3.8E-24 128.4 10.6 84 101-184 8-99 (99)
71 1x5s_A Cold-inducible RNA-bind 99.8 7.3E-20 2.5E-24 130.0 9.6 88 103-190 9-96 (102)
72 2dh8_A DAZ-associated protein 99.8 1.3E-19 4.3E-24 129.5 10.9 91 9-99 7-98 (105)
73 1x5u_A Splicing factor 3B subu 99.8 1.5E-19 5.3E-24 129.0 11.3 90 9-98 6-97 (105)
74 2cqb_A Peptidyl-prolyl CIS-tra 99.8 5.5E-20 1.9E-24 130.6 8.7 88 103-190 9-96 (102)
75 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.3E-19 4.6E-24 124.7 10.3 81 16-96 4-86 (87)
76 1oo0_B CG8781-PA, drosophila Y 99.8 8.6E-20 3E-24 131.4 9.7 88 101-188 21-108 (110)
77 2dgp_A Bruno-like 4, RNA bindi 99.8 7.8E-20 2.7E-24 130.7 9.4 89 101-189 8-99 (106)
78 2dng_A Eukaryotic translation 99.8 2.5E-19 8.7E-24 127.5 12.0 87 102-190 11-97 (103)
79 1u6f_A Tcubp1, RNA-binding pro 99.8 2.6E-19 8.9E-24 134.3 12.7 90 101-190 37-126 (139)
80 2dng_A Eukaryotic translation 99.8 4.9E-19 1.7E-23 126.0 13.4 88 11-99 8-96 (103)
81 2div_A TRNA selenocysteine ass 99.8 1.3E-19 4.3E-24 128.0 10.2 85 103-187 6-95 (99)
82 1p27_B RNA-binding protein 8A; 99.8 1.2E-19 4.2E-24 129.7 10.2 90 8-97 13-104 (106)
83 1whw_A Hypothetical protein ri 99.8 2.2E-19 7.5E-24 126.8 11.3 86 14-99 4-91 (99)
84 1s79_A Lupus LA protein; RRM, 99.8 1.1E-19 3.7E-24 129.4 9.7 82 102-185 7-88 (103)
85 3ucg_A Polyadenylate-binding p 99.8 1.2E-19 4.1E-24 125.5 9.7 81 105-186 5-85 (89)
86 2dhg_A TRNA selenocysteine ass 99.8 1.7E-19 5.8E-24 128.5 10.7 89 103-192 6-96 (104)
87 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.9E-19 6.6E-24 127.8 10.7 87 13-99 7-95 (102)
88 1p1t_A Cleavage stimulation fa 99.8 8.2E-20 2.8E-24 130.1 8.7 87 103-189 5-91 (104)
89 3md1_A Nuclear and cytoplasmic 99.8 2.8E-19 9.6E-24 122.0 11.0 80 18-97 1-82 (83)
90 2dnm_A SRP46 splicing factor; 99.8 1.9E-19 6.6E-24 128.0 10.4 89 11-99 6-96 (103)
91 2e5h_A Zinc finger CCHC-type a 99.8 2.8E-19 9.7E-24 125.0 11.1 85 9-93 7-93 (94)
92 2cqd_A RNA-binding region cont 99.8 3.5E-19 1.2E-23 129.5 11.9 88 101-189 12-99 (116)
93 2dnh_A Bruno-like 5, RNA bindi 99.8 6E-19 2.1E-23 125.9 12.9 88 11-99 8-100 (105)
94 4a8x_A RNA-binding protein wit 99.8 1.1E-19 3.8E-24 125.4 8.4 83 105-187 3-86 (88)
95 2dh8_A DAZ-associated protein 99.8 1.7E-19 5.9E-24 128.7 9.7 90 101-191 11-100 (105)
96 2fy1_A RNA-binding motif prote 99.8 2.2E-19 7.5E-24 130.6 10.4 86 103-189 4-89 (116)
97 2d9p_A Polyadenylate-binding p 99.8 7E-19 2.4E-23 125.1 12.8 89 9-99 6-96 (103)
98 3s7r_A Heterogeneous nuclear r 99.8 3.9E-19 1.3E-23 122.5 11.1 81 102-183 7-87 (87)
99 2kxn_B Transformer-2 protein h 99.8 1.6E-19 5.4E-24 133.8 9.7 87 101-187 41-127 (129)
100 2la6_A RNA-binding protein FUS 99.8 4.1E-19 1.4E-23 125.4 11.4 85 9-93 4-98 (99)
101 2rs2_A Musashi-1, RNA-binding 99.8 2.2E-19 7.4E-24 129.2 10.0 90 9-98 16-106 (109)
102 1wi8_A EIF-4B, eukaryotic tran 99.8 4.9E-19 1.7E-23 126.2 11.7 88 11-99 8-97 (104)
103 2cqi_A Nucleolysin TIAR; RNA r 99.8 5.2E-19 1.8E-23 125.8 11.8 89 101-191 10-98 (103)
104 2cqp_A RNA-binding protein 12; 99.8 1.4E-19 4.9E-24 127.5 8.7 84 103-186 12-95 (98)
105 1wi8_A EIF-4B, eukaryotic tran 99.8 2.6E-19 8.8E-24 127.6 10.1 87 102-190 11-98 (104)
106 3pgw_S U1-70K; protein-RNA com 99.8 3.8E-20 1.3E-24 163.5 7.0 157 25-188 4-184 (437)
107 2rs2_A Musashi-1, RNA-binding 99.8 2.7E-19 9.4E-24 128.7 10.3 87 102-189 21-107 (109)
108 2cpe_A RNA-binding protein EWS 99.8 1.8E-19 6E-24 130.4 9.2 90 101-190 10-107 (113)
109 2cph_A RNA binding motif prote 99.8 5.8E-19 2E-23 126.3 11.8 91 9-99 6-100 (107)
110 2dnz_A Probable RNA-binding pr 99.8 5.2E-19 1.8E-23 123.9 11.3 85 15-99 2-88 (95)
111 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.4E-19 8.2E-24 122.9 9.3 81 14-94 3-85 (85)
112 2kxn_B Transformer-2 protein h 99.8 2.2E-19 7.6E-24 133.0 9.8 88 10-97 38-127 (129)
113 3n9u_C Cleavage and polyadenyl 99.8 2.4E-19 8.1E-24 137.1 10.3 82 105-186 54-137 (156)
114 1x5s_A Cold-inducible RNA-bind 99.8 4E-19 1.4E-23 126.1 10.8 87 13-99 7-95 (102)
115 2ywk_A Putative RNA-binding pr 99.8 2.8E-19 9.4E-24 125.3 9.8 83 102-185 12-94 (95)
116 2cpe_A RNA-binding protein EWS 99.8 5.2E-19 1.8E-23 127.9 11.4 91 9-99 6-106 (113)
117 1oo0_B CG8781-PA, drosophila Y 99.8 2.2E-19 7.4E-24 129.3 9.3 91 8-98 16-108 (110)
118 2khc_A Testis-specific RNP-typ 99.8 1.8E-19 6.2E-24 131.4 8.9 83 102-184 36-118 (118)
119 2cqg_A TDP-43, TAR DNA-binding 99.8 1.4E-18 4.7E-23 123.6 13.1 89 101-191 10-98 (103)
120 3lqv_A PRE-mRNA branch site pr 99.8 8.4E-20 2.9E-24 132.5 6.9 103 15-132 5-109 (115)
121 3p5t_L Cleavage and polyadenyl 99.8 9.6E-20 3.3E-24 126.5 6.9 80 19-98 2-85 (90)
122 2jrs_A RNA-binding protein 39; 99.8 5E-19 1.7E-23 127.1 10.8 86 11-96 19-106 (108)
123 2cq3_A RNA-binding protein 9; 99.8 7.6E-19 2.6E-23 124.9 11.6 89 101-191 10-98 (103)
124 1wez_A HnRNP H', FTP-3, hetero 99.8 4.2E-19 1.4E-23 126.2 10.2 85 12-98 9-94 (102)
125 1wg5_A Heterogeneous nuclear r 99.8 6.9E-19 2.4E-23 125.5 11.4 88 10-98 7-96 (104)
126 1x5t_A Splicing factor 3B subu 99.8 3.8E-19 1.3E-23 124.8 9.8 84 16-99 3-89 (96)
127 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.3E-18 4.5E-23 123.7 12.7 88 10-99 7-96 (103)
128 2cq3_A RNA-binding protein 9; 99.8 1.8E-18 6.3E-23 122.9 13.4 90 9-100 6-97 (103)
129 3ex7_B RNA-binding protein 8A; 99.8 3E-19 1E-23 131.7 9.5 91 101-191 17-107 (126)
130 2x1f_A MRNA 3'-END-processing 99.8 4E-19 1.4E-23 124.8 9.7 82 17-98 1-84 (96)
131 1s79_A Lupus LA protein; RRM, 99.8 2E-19 6.8E-24 128.0 8.1 82 13-95 6-88 (103)
132 2mss_A Protein (musashi1); RNA 99.8 1.5E-19 5.2E-24 121.0 7.1 75 108-183 1-75 (75)
133 3ulh_A THO complex subunit 4; 99.8 5.7E-19 1.9E-23 126.4 10.5 81 103-184 26-106 (107)
134 2dgw_A Probable RNA-binding pr 99.8 1E-18 3.4E-23 121.5 11.5 83 103-188 7-89 (91)
135 2cqp_A RNA-binding protein 12; 99.8 4.5E-19 1.5E-23 124.9 9.7 85 12-96 9-95 (98)
136 2dgx_A KIAA0430 protein; RRM d 99.8 4.6E-19 1.6E-23 124.5 9.8 83 104-189 7-93 (96)
137 2dgp_A Bruno-like 4, RNA bindi 99.8 5.2E-19 1.8E-23 126.4 10.1 90 10-99 5-99 (106)
138 2cpy_A RNA-binding protein 12; 99.8 3.5E-19 1.2E-23 129.1 9.3 84 12-96 9-94 (114)
139 2dis_A Unnamed protein product 99.8 5.6E-19 1.9E-23 126.9 10.1 87 104-190 6-96 (109)
140 1x4b_A Heterogeneous nuclear r 99.8 3.8E-19 1.3E-23 129.3 9.3 87 103-190 24-110 (116)
141 2ywk_A Putative RNA-binding pr 99.8 5.6E-19 1.9E-23 123.7 9.8 84 10-94 8-93 (95)
142 2dgv_A HnRNP M, heterogeneous 99.8 6.7E-19 2.3E-23 122.5 10.1 85 103-189 5-89 (92)
143 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.1E-18 3.7E-23 133.5 12.1 88 103-190 36-123 (156)
144 2div_A TRNA selenocysteine ass 99.8 6.6E-19 2.3E-23 124.3 10.1 84 14-97 5-95 (99)
145 2khc_A Testis-specific RNP-typ 99.8 6.2E-19 2.1E-23 128.5 10.2 82 12-93 34-117 (118)
146 2cpf_A RNA binding motif prote 99.8 7.8E-19 2.7E-23 123.7 10.4 84 16-99 3-91 (98)
147 1u6f_A Tcubp1, RNA-binding pro 99.8 1.5E-18 5E-23 130.2 12.4 89 11-99 35-125 (139)
148 2do0_A HnRNP M, heterogeneous 99.8 3.6E-18 1.2E-22 123.6 14.0 87 11-98 8-96 (114)
149 2db1_A Heterogeneous nuclear r 99.8 8.4E-19 2.9E-23 127.9 10.6 84 11-95 10-97 (118)
150 2cq4_A RNA binding motif prote 99.8 1.6E-19 5.6E-24 130.8 6.7 85 103-188 22-106 (114)
151 1x4b_A Heterogeneous nuclear r 99.8 6.6E-19 2.3E-23 128.0 9.8 84 16-99 25-109 (116)
152 2m2b_A RNA-binding protein 10; 99.8 2.5E-19 8.5E-24 133.1 7.7 88 10-98 15-110 (131)
153 2cq1_A PTB-like protein L; RRM 99.8 2.1E-18 7.3E-23 122.1 12.0 85 9-99 6-94 (101)
154 2cpi_A CCR4-NOT transcription 99.8 4E-19 1.4E-23 128.2 8.4 87 102-188 11-103 (111)
155 3ucg_A Polyadenylate-binding p 99.8 1.3E-18 4.5E-23 120.2 10.7 80 17-96 5-85 (89)
156 2do0_A HnRNP M, heterogeneous 99.8 2E-18 6.8E-23 125.0 12.1 86 102-188 11-96 (114)
157 2wbr_A GW182, gawky, LD47780P; 99.8 3.6E-19 1.2E-23 121.0 7.4 74 105-184 6-79 (89)
158 1sjq_A Polypyrimidine tract-bi 99.8 3.8E-19 1.3E-23 126.2 7.8 83 103-191 13-97 (105)
159 2dgw_A Probable RNA-binding pr 99.8 3.4E-18 1.2E-22 118.8 12.5 83 13-97 5-88 (91)
160 2ki2_A SS-DNA binding protein 99.8 1E-19 3.5E-24 126.2 4.7 82 107-189 2-83 (90)
161 3ns6_A Eukaryotic translation 99.8 1.4E-19 4.7E-24 128.2 5.4 82 14-95 2-92 (100)
162 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.4E-19 4.8E-24 128.1 5.5 85 101-187 14-99 (100)
163 2jwn_A Embryonic polyadenylate 99.8 1E-18 3.5E-23 128.5 10.2 83 105-188 35-117 (124)
164 2nlw_A Eukaryotic translation 99.8 7.8E-19 2.7E-23 125.4 9.3 84 103-188 12-102 (105)
165 2hvz_A Splicing factor, argini 99.8 4.6E-19 1.6E-23 125.6 8.0 93 19-116 1-101 (101)
166 1uaw_A Mouse-musashi-1; RNP-ty 99.8 2.3E-19 7.9E-24 120.7 6.1 76 107-183 1-76 (77)
167 2m2b_A RNA-binding protein 10; 99.8 1.4E-19 4.9E-24 134.5 5.4 87 101-188 18-110 (131)
168 1x4e_A RNA binding motif, sing 99.8 9.2E-20 3.1E-24 125.1 4.0 81 104-184 3-83 (85)
169 2ek1_A RNA-binding protein 12; 99.8 2.6E-19 8.8E-24 125.4 6.2 81 104-184 13-93 (95)
170 1x4a_A Splicing factor, argini 99.8 1.4E-18 4.9E-23 124.8 10.3 86 101-189 17-102 (109)
171 1sjq_A Polypyrimidine tract-bi 99.8 6.4E-19 2.2E-23 125.0 8.2 82 13-100 11-96 (105)
172 2kt5_A RNA and export factor-b 99.8 2.1E-18 7.2E-23 126.8 11.4 88 102-190 31-118 (124)
173 2fy1_A RNA-binding motif prote 99.8 2E-18 6.8E-23 125.6 11.0 84 14-98 3-88 (116)
174 2mss_A Protein (musashi1); RNA 99.8 4.3E-19 1.5E-23 118.8 6.9 74 20-93 1-75 (75)
175 2dhg_A TRNA selenocysteine ass 99.8 1.6E-18 5.6E-23 123.4 10.3 86 13-99 4-93 (104)
176 2cq4_A RNA binding motif prote 99.8 4.6E-19 1.6E-23 128.5 7.5 81 16-96 23-104 (114)
177 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.5E-18 5.3E-23 130.0 10.7 82 102-183 59-140 (140)
178 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.9E-18 6.6E-23 129.5 11.1 85 9-93 54-140 (140)
179 1wg5_A Heterogeneous nuclear r 99.8 1.8E-18 6.3E-23 123.3 10.4 85 102-188 11-96 (104)
180 1p1t_A Cleavage stimulation fa 99.8 4.6E-19 1.6E-23 126.2 7.1 85 13-97 3-89 (104)
181 2hgl_A HNRPF protein, heteroge 99.8 7.1E-19 2.4E-23 131.2 8.3 84 102-187 40-126 (136)
182 3ulh_A THO complex subunit 4; 99.8 2.6E-18 9E-23 122.9 10.9 82 12-94 23-106 (107)
183 2ek1_A RNA-binding protein 12; 99.8 6.2E-19 2.1E-23 123.4 7.4 81 14-94 11-93 (95)
184 1x5o_A RNA binding motif, sing 99.8 2.1E-18 7.1E-23 124.9 10.4 84 102-186 21-112 (114)
185 4a8x_A RNA-binding protein wit 99.8 1.4E-18 4.8E-23 119.8 9.0 82 16-97 2-86 (88)
186 3ex7_B RNA-binding protein 8A; 99.8 1.1E-18 3.6E-23 128.7 8.8 92 8-99 12-105 (126)
187 2lea_A Serine/arginine-rich sp 99.8 7E-19 2.4E-23 131.4 7.8 89 11-99 40-130 (135)
188 1fj7_A Nucleolin RBD1, protein 99.8 2E-19 6.8E-24 127.5 4.5 96 2-98 1-97 (101)
189 3r27_A HnRNP L, heterogeneous 99.8 1.5E-18 5.3E-23 121.8 8.7 79 103-187 18-98 (100)
190 2kt5_A RNA and export factor-b 99.8 8.7E-18 3E-22 123.5 13.2 86 13-99 30-117 (124)
191 2xs2_A Deleted in azoospermia- 99.8 8.8E-19 3E-23 124.4 7.5 85 13-98 4-88 (102)
192 2j76_E EIF-4B, EIF4B, eukaryot 99.8 4.3E-19 1.5E-23 125.6 5.9 87 9-96 10-98 (100)
193 2cq1_A PTB-like protein L; RRM 99.8 2.5E-18 8.4E-23 121.8 9.7 84 101-190 10-95 (101)
194 2cpy_A RNA-binding protein 12; 99.8 9.3E-19 3.2E-23 126.9 7.7 83 103-187 12-95 (114)
195 1x4d_A Matrin 3; structural ge 99.8 2.8E-18 9.7E-23 121.5 9.9 84 9-98 6-94 (102)
196 2dgv_A HnRNP M, heterogeneous 99.8 3.6E-18 1.2E-22 118.8 10.2 83 14-98 4-88 (92)
197 1x5o_A RNA binding motif, sing 99.8 7.7E-18 2.6E-22 121.9 12.4 84 12-96 19-112 (114)
198 1x4a_A Splicing factor, argini 99.8 8.5E-18 2.9E-22 120.7 12.3 87 9-98 13-101 (109)
199 2cpi_A CCR4-NOT transcription 99.8 2.9E-18 9.8E-23 123.7 9.8 87 12-98 9-103 (111)
200 2a3j_A U1 small nuclear ribonu 99.8 2.9E-18 9.8E-23 126.4 9.9 85 103-190 26-114 (127)
201 1h2v_Z 20 kDa nuclear CAP bind 99.8 5.7E-18 2E-22 129.4 12.0 87 12-98 33-121 (156)
202 1wel_A RNA-binding protein 12; 99.8 1.5E-18 5.1E-23 127.7 8.3 82 14-95 21-103 (124)
203 2krb_A Eukaryotic translation 99.8 8.9E-19 3.1E-23 119.1 6.6 73 106-180 1-80 (81)
204 1x4d_A Matrin 3; structural ge 99.8 9.8E-19 3.3E-23 123.8 7.0 81 103-189 12-95 (102)
205 2err_A Ataxin-2-binding protei 99.8 1.1E-18 3.9E-23 125.4 7.4 85 101-187 24-108 (109)
206 1wex_A Hypothetical protein (r 99.8 7.3E-18 2.5E-22 120.0 11.5 82 12-99 9-94 (104)
207 1wez_A HnRNP H', FTP-3, hetero 99.8 2.7E-18 9.1E-23 122.0 9.1 83 103-188 12-94 (102)
208 1iqt_A AUF1, heterogeneous nuc 99.8 5E-19 1.7E-23 118.4 5.0 74 20-93 1-75 (75)
209 3n9u_C Cleavage and polyadenyl 99.8 2.8E-18 9.7E-23 131.1 9.9 79 17-95 54-136 (156)
210 1uaw_A Mouse-musashi-1; RNP-ty 99.8 9E-19 3.1E-23 117.7 6.3 75 19-93 1-76 (77)
211 2fc9_A NCL protein; structure 99.8 3.7E-18 1.3E-22 120.9 9.7 84 102-189 11-94 (101)
212 1rk8_A CG8781-PA, CG8781-PA pr 99.8 4.5E-18 1.5E-22 131.3 10.8 90 10-99 64-155 (165)
213 3r27_A HnRNP L, heterogeneous 99.8 5.9E-18 2E-22 118.9 10.2 80 11-96 14-97 (100)
214 2dnn_A RNA-binding protein 12; 99.8 2.7E-18 9.2E-23 123.3 8.6 78 16-95 14-92 (109)
215 2ad9_A Polypyrimidine tract-bi 99.8 2.7E-18 9.3E-23 124.7 8.7 84 102-191 27-112 (119)
216 1iqt_A AUF1, heterogeneous nuc 99.8 8E-19 2.7E-23 117.4 5.5 75 108-183 1-75 (75)
217 2kn4_A Immunoglobulin G-bindin 99.8 6.6E-18 2.2E-22 129.3 11.3 87 12-98 64-152 (158)
218 1fj7_A Nucleolin RBD1, protein 99.8 3.2E-19 1.1E-23 126.4 3.7 86 102-189 13-98 (101)
219 2db1_A Heterogeneous nuclear r 99.8 1.9E-18 6.5E-23 126.0 7.9 82 103-186 14-98 (118)
220 1wel_A RNA-binding protein 12; 99.8 8E-19 2.7E-23 129.1 5.9 84 103-187 22-105 (124)
221 2hgl_A HNRPF protein, heteroge 99.8 3.7E-18 1.3E-22 127.3 9.5 82 13-95 39-124 (136)
222 2ad9_A Polypyrimidine tract-bi 99.8 7.6E-18 2.6E-22 122.3 10.9 83 12-100 25-111 (119)
223 2fc8_A NCL protein; structure 99.8 5E-18 1.7E-22 120.4 9.7 86 101-189 10-95 (102)
224 1x4e_A RNA binding motif, sing 99.8 9.3E-19 3.2E-23 120.0 5.6 79 15-93 2-82 (85)
225 2fc9_A NCL protein; structure 99.8 1.1E-17 3.7E-22 118.5 11.3 84 11-98 8-93 (101)
226 1wex_A Hypothetical protein (r 99.8 4.1E-18 1.4E-22 121.3 9.1 83 103-191 12-96 (104)
227 1x4c_A Splicing factor, argini 99.7 1.2E-17 4.1E-22 119.8 11.6 81 103-190 12-97 (108)
228 3q2s_C Cleavage and polyadenyl 99.7 3E-18 1E-22 139.0 9.5 82 105-186 67-150 (229)
229 1why_A Hypothetical protein ri 99.7 1.1E-17 3.8E-22 117.6 11.0 83 10-98 9-95 (97)
230 2dnq_A RNA-binding protein 4B; 99.7 6.7E-18 2.3E-22 117.0 9.8 80 103-190 5-84 (90)
231 2hgn_A Heterogeneous nuclear r 99.7 5.3E-19 1.8E-23 132.3 4.4 125 61-190 2-127 (139)
232 2dis_A Unnamed protein product 99.7 5.5E-18 1.9E-22 121.7 9.6 85 15-99 5-95 (109)
233 2dgx_A KIAA0430 protein; RRM d 99.7 6.2E-18 2.1E-22 118.7 9.6 81 15-98 6-92 (96)
234 2dnn_A RNA-binding protein 12; 99.7 2.9E-18 9.8E-23 123.1 7.9 80 104-186 14-93 (109)
235 1why_A Hypothetical protein ri 99.7 8.2E-18 2.8E-22 118.2 10.0 80 103-188 14-95 (97)
236 2cpx_A Hypothetical protein FL 99.7 1.3E-18 4.4E-23 126.2 6.0 88 103-190 22-109 (115)
237 2jwn_A Embryonic polyadenylate 99.7 8.4E-18 2.9E-22 123.5 10.5 82 17-98 35-117 (124)
238 2hgm_A HNRPF protein, heteroge 99.7 2.2E-18 7.4E-23 126.7 7.1 84 10-95 34-120 (126)
239 2err_A Ataxin-2-binding protei 99.7 6.2E-18 2.1E-22 121.5 9.3 84 11-96 22-107 (109)
240 2ytc_A PRE-mRNA-splicing facto 99.7 1.2E-17 4.3E-22 114.3 10.4 78 101-184 7-85 (85)
241 2jvr_A Nucleolar protein 3; RN 99.7 5.7E-18 2E-22 121.8 8.8 79 105-187 27-106 (111)
242 2fc8_A NCL protein; structure 99.7 2.9E-17 1E-21 116.4 12.4 85 12-99 9-95 (102)
243 1x4g_A Nucleolysin TIAR; struc 99.7 7E-18 2.4E-22 121.2 9.1 83 103-191 22-104 (109)
244 2xs2_A Deleted in azoospermia- 99.7 4E-18 1.4E-22 121.0 7.7 84 103-189 6-89 (102)
245 2e5j_A Methenyltetrahydrofolat 99.7 7.9E-18 2.7E-22 118.3 9.0 82 102-188 15-96 (97)
246 2dgt_A RNA-binding protein 30; 99.7 1.4E-17 4.9E-22 115.8 10.2 82 101-190 5-86 (92)
247 1fxl_A Paraneoplastic encephal 99.7 1.7E-17 5.7E-22 127.4 11.5 95 106-200 2-96 (167)
248 2cpj_A Non-POU domain-containi 99.7 1.9E-17 6.4E-22 116.8 10.8 85 8-98 5-91 (99)
249 2jvo_A Nucleolar protein 3; nu 99.7 5.1E-18 1.8E-22 121.8 8.0 82 100-189 25-106 (108)
250 2cpj_A Non-POU domain-containi 99.7 5.6E-18 1.9E-22 119.6 8.0 83 101-189 10-92 (99)
251 1fjc_A Nucleolin RBD2, protein 99.7 6.1E-18 2.1E-22 118.6 8.0 83 101-188 11-93 (96)
252 2lmi_A GRSF-1, G-rich sequence 99.7 2.4E-18 8.1E-23 123.3 5.9 83 12-95 5-91 (107)
253 2lcw_A RNA-binding protein FUS 99.6 1.8E-19 6.2E-24 131.0 0.0 88 103-190 4-99 (116)
254 2xnq_A Nuclear polyadenylated 99.7 1.3E-17 4.4E-22 117.3 9.4 79 101-187 17-96 (97)
255 3lqv_A PRE-mRNA branch site pr 99.7 6.8E-18 2.3E-22 122.4 8.1 83 104-189 6-88 (115)
256 1nu4_A U1A RNA binding domain; 99.7 3.4E-18 1.2E-22 120.1 6.3 84 103-189 5-92 (97)
257 2cpd_A Apobec-1 stimulating pr 99.7 3.2E-17 1.1E-21 115.6 11.3 81 101-189 10-92 (99)
258 2e5j_A Methenyltetrahydrofolat 99.7 2.1E-17 7.2E-22 116.2 10.3 85 8-97 9-95 (97)
259 2wbr_A GW182, gawky, LD47780P; 99.7 9.7E-18 3.3E-22 114.0 8.2 72 16-93 5-78 (89)
260 2ki2_A SS-DNA binding protein 99.7 1.4E-18 4.8E-23 120.4 4.2 79 19-98 2-82 (90)
261 2lmi_A GRSF-1, G-rich sequence 99.7 1.8E-18 6.1E-23 124.0 4.6 84 102-187 7-93 (107)
262 1b7f_A Protein (SXL-lethal pro 99.7 1.4E-17 4.8E-22 128.1 10.0 96 105-200 2-97 (168)
263 2la4_A Nuclear and cytoplasmic 99.7 6.3E-18 2.1E-22 119.7 7.2 77 104-186 25-101 (101)
264 2nlw_A Eukaryotic translation 99.7 1.3E-17 4.6E-22 118.9 8.8 82 13-96 10-100 (105)
265 2a3j_A U1 small nuclear ribonu 99.7 1.3E-17 4.6E-22 122.8 8.9 84 11-97 22-111 (127)
266 2hvz_A Splicing factor, argini 99.7 5.9E-18 2E-22 119.8 6.7 78 107-189 1-78 (101)
267 2dha_A FLJ20171 protein; RRM d 99.7 8.5E-18 2.9E-22 123.2 7.6 78 16-94 21-103 (123)
268 2dnp_A RNA-binding protein 14; 99.7 2.3E-17 7.8E-22 114.3 9.5 79 103-189 6-84 (90)
269 1x4f_A Matrin 3; structural ge 99.7 3E-17 1E-21 117.9 10.3 81 12-98 19-104 (112)
270 4f02_A Polyadenylate-binding p 99.7 2E-17 6.9E-22 132.7 10.5 85 104-188 13-97 (213)
271 2dgu_A Heterogeneous nuclear r 99.7 3.5E-17 1.2E-21 116.3 10.2 81 103-191 8-88 (103)
272 1wf1_A RNA-binding protein RAL 99.7 8.8E-18 3E-22 120.9 7.1 96 84-188 6-102 (110)
273 2hgn_A Heterogeneous nuclear r 99.7 3.1E-18 1.1E-22 128.1 4.8 85 12-98 40-125 (139)
274 2dnq_A RNA-binding protein 4B; 99.7 4.7E-17 1.6E-21 112.7 10.5 78 14-99 4-83 (90)
275 2f3j_A RNA and export factor b 99.7 2.6E-17 9E-22 128.3 10.0 85 104-189 86-170 (177)
276 2cpx_A Hypothetical protein FL 99.7 9.1E-18 3.1E-22 121.7 6.7 89 11-99 18-108 (115)
277 2dha_A FLJ20171 protein; RRM d 99.7 9.6E-18 3.3E-22 122.9 6.8 81 104-186 21-105 (123)
278 3d2w_A TAR DNA-binding protein 99.7 2.2E-17 7.7E-22 114.2 8.3 81 12-97 5-85 (89)
279 1x4c_A Splicing factor, argini 99.7 1E-16 3.5E-21 114.9 12.1 78 15-99 12-96 (108)
280 2e44_A Insulin-like growth fac 99.7 2.9E-17 9.9E-22 115.1 8.9 81 103-187 12-93 (96)
281 1x5p_A Negative elongation fac 99.7 7.9E-17 2.7E-21 113.2 11.0 81 102-190 11-91 (97)
282 2kvi_A Nuclear polyadenylated 99.7 1.4E-17 4.9E-22 116.8 7.0 79 103-189 7-86 (96)
283 1whx_A Hypothetical protein ri 99.7 2.6E-17 8.7E-22 118.7 8.2 79 104-188 8-86 (111)
284 1fjc_A Nucleolin RBD2, protein 99.7 3.3E-17 1.1E-21 114.9 8.5 83 11-98 9-93 (96)
285 2dgt_A RNA-binding protein 30; 99.7 1.2E-16 4.2E-21 111.1 11.4 80 12-99 4-85 (92)
286 2e5g_A U6 snRNA-specific termi 99.7 6E-17 2E-21 113.2 9.7 81 104-190 6-86 (94)
287 2jvo_A Nucleolar protein 3; nu 99.7 5.3E-17 1.8E-21 116.5 9.4 79 11-97 24-104 (108)
288 2ytc_A PRE-mRNA-splicing facto 99.7 6.7E-17 2.3E-21 110.6 9.5 76 12-93 6-84 (85)
289 1l3k_A Heterogeneous nuclear r 99.7 7.8E-17 2.7E-21 127.1 11.3 87 13-99 99-186 (196)
290 2krb_A Eukaryotic translation 99.7 1.3E-17 4.3E-22 113.3 5.7 71 18-90 1-80 (81)
291 1x4f_A Matrin 3; structural ge 99.7 1.1E-17 3.9E-22 120.1 5.6 81 103-189 22-105 (112)
292 2cpd_A Apobec-1 stimulating pr 99.7 2.4E-16 8.3E-21 111.1 12.5 82 9-98 6-91 (99)
293 2dnl_A Cytoplasmic polyadenyla 99.7 3E-17 1E-21 118.9 7.9 80 14-94 4-86 (114)
294 3q2s_C Cleavage and polyadenyl 99.7 3.4E-17 1.1E-21 132.9 9.0 79 17-95 67-149 (229)
295 2j8a_A Histone-lysine N-methyl 99.7 4E-17 1.4E-21 118.3 8.3 79 107-185 3-95 (136)
296 2hgm_A HNRPF protein, heteroge 99.7 1.6E-17 5.5E-22 122.0 6.3 82 103-187 39-122 (126)
297 2dgu_A Heterogeneous nuclear r 99.7 1.2E-16 4.2E-21 113.4 10.7 79 13-99 6-86 (103)
298 2cqh_A IGF-II mRNA-binding pro 99.7 2.4E-17 8.1E-22 114.9 6.8 81 103-190 5-87 (93)
299 1sjr_A Polypyrimidine tract-bi 99.7 1.2E-16 4E-21 121.9 11.1 80 105-188 45-126 (164)
300 1x4g_A Nucleolysin TIAR; struc 99.7 8.4E-17 2.9E-21 115.5 9.6 80 14-99 21-102 (109)
301 2xnq_A Nuclear polyadenylated 99.7 1.2E-16 4.2E-21 112.3 10.0 80 9-96 13-95 (97)
302 2la4_A Nuclear and cytoplasmic 99.7 5.5E-17 1.9E-21 114.8 8.2 76 14-95 23-100 (101)
303 2voo_A Lupus LA protein; RNA-b 99.7 1.8E-16 6.3E-21 125.2 11.9 115 69-185 63-186 (193)
304 2lcw_A RNA-binding protein FUS 99.5 1.6E-18 5.6E-23 125.9 0.0 87 13-99 2-98 (116)
305 1nu4_A U1A RNA binding domain; 99.7 2.6E-17 9E-22 115.5 6.2 81 14-97 4-90 (97)
306 1wf0_A TDP-43, TAR DNA-binding 99.7 6.1E-17 2.1E-21 111.7 7.8 79 16-99 3-81 (88)
307 2jvr_A Nucleolar protein 3; RN 99.7 4.4E-17 1.5E-21 117.2 7.2 79 14-96 24-105 (111)
308 1wf1_A RNA-binding protein RAL 99.7 2.9E-16 1E-20 112.8 11.4 77 14-98 23-102 (110)
309 3md3_A Nuclear and cytoplasmic 99.7 2.9E-16 9.8E-21 120.3 12.1 82 13-94 82-165 (166)
310 2cq2_A Hypothetical protein LO 99.7 6.8E-17 2.3E-21 116.2 7.9 80 103-188 22-108 (114)
311 2dnp_A RNA-binding protein 14; 99.7 1.6E-16 5.5E-21 110.0 9.6 78 13-98 4-83 (90)
312 1x5p_A Negative elongation fac 99.7 5.1E-16 1.7E-20 109.0 12.1 83 9-99 6-90 (97)
313 2e44_A Insulin-like growth fac 99.7 1.3E-16 4.3E-21 111.8 8.8 80 14-97 11-93 (96)
314 2e5g_A U6 snRNA-specific termi 99.7 2.8E-16 9.5E-21 109.7 10.6 79 15-98 5-84 (94)
315 2f3j_A RNA and export factor b 99.7 1.1E-16 3.7E-21 124.9 9.2 82 14-96 84-167 (177)
316 2pe8_A Splicing factor 45; RRM 99.7 9.1E-17 3.1E-21 114.5 8.0 83 104-186 6-94 (105)
317 2cqh_A IGF-II mRNA-binding pro 99.7 1.1E-16 3.8E-21 111.5 8.2 78 15-99 5-86 (93)
318 3d2w_A TAR DNA-binding protein 99.7 1.2E-16 4.1E-21 110.5 8.1 79 103-188 8-86 (89)
319 2dnl_A Cytoplasmic polyadenyla 99.7 1.1E-16 3.6E-21 116.0 8.0 77 104-183 6-85 (114)
320 1wg1_A KIAA1579 protein, homol 99.7 8.3E-17 2.8E-21 111.0 7.1 76 105-187 4-79 (88)
321 2i2y_A Fusion protein consists 99.7 1.5E-16 5.1E-21 120.7 8.8 81 11-96 66-148 (150)
322 3zzy_A Polypyrimidine tract-bi 99.7 2.6E-16 9E-21 115.7 9.5 79 105-188 27-108 (130)
323 2j8a_A Histone-lysine N-methyl 99.7 1.8E-16 6.2E-21 114.9 8.4 75 19-93 3-93 (136)
324 3egn_A RNA-binding protein 40; 99.7 1.3E-16 4.3E-21 120.2 8.0 83 103-188 42-132 (143)
325 2cjk_A Nuclear polyadenylated 99.7 1.2E-16 4.3E-21 122.7 7.8 80 17-96 86-166 (167)
326 2kvi_A Nuclear polyadenylated 99.7 1.7E-16 6E-21 111.2 7.8 78 13-98 5-85 (96)
327 3beg_B Splicing factor, argini 99.7 1.2E-16 3.9E-21 116.0 6.8 78 104-188 14-96 (115)
328 2g4b_A Splicing factor U2AF 65 99.7 5.5E-16 1.9E-20 119.6 11.0 80 15-94 91-172 (172)
329 2yh0_A Splicing factor U2AF 65 99.7 9E-16 3.1E-20 121.1 12.3 84 15-98 111-196 (198)
330 1whx_A Hypothetical protein ri 99.7 1.4E-16 4.8E-21 114.8 6.9 76 15-96 7-84 (111)
331 3egn_A RNA-binding protein 40; 99.7 7.7E-17 2.6E-21 121.4 5.6 86 13-98 40-132 (143)
332 2diu_A KIAA0430 protein; struc 99.7 3.9E-16 1.3E-20 107.1 8.1 74 107-190 10-88 (96)
333 1wg1_A KIAA1579 protein, homol 99.6 4.3E-16 1.5E-20 107.4 8.3 74 16-96 3-78 (88)
334 2qfj_A FBP-interacting repress 99.6 9.8E-16 3.3E-20 122.6 11.4 84 16-99 123-208 (216)
335 2hzc_A Splicing factor U2AF 65 99.6 5.8E-16 2E-20 106.3 8.7 72 104-182 4-86 (87)
336 3u1l_A PRE-mRNA-splicing facto 99.6 1.5E-16 5.2E-21 128.9 6.1 108 75-188 102-231 (240)
337 3nmr_A Cugbp ELAV-like family 99.6 7.5E-16 2.6E-20 119.0 9.8 84 105-188 2-90 (175)
338 2e5i_A Heterogeneous nuclear r 99.6 1E-15 3.4E-20 112.0 9.8 76 107-188 26-104 (124)
339 3tyt_A Heterogeneous nuclear r 99.6 3.8E-16 1.3E-20 124.6 8.2 77 105-186 3-80 (205)
340 2voo_A Lupus LA protein; RNA-b 99.6 1.1E-15 3.6E-20 120.9 10.4 79 17-96 108-187 (193)
341 1wf0_A TDP-43, TAR DNA-binding 99.6 2.7E-16 9.4E-21 108.4 5.9 79 105-190 4-82 (88)
342 3pgw_S U1-70K; protein-RNA com 99.6 1.2E-15 4.1E-20 134.8 11.5 83 15-97 99-183 (437)
343 2hzc_A Splicing factor U2AF 65 99.6 7.9E-16 2.7E-20 105.6 7.2 72 15-92 3-86 (87)
344 2bz2_A Negative elongation fac 99.6 8.4E-16 2.9E-20 112.4 7.6 78 104-189 37-114 (121)
345 2cq2_A Hypothetical protein LO 99.6 1.1E-15 3.8E-20 109.8 8.0 79 14-98 21-108 (114)
346 1sjr_A Polypyrimidine tract-bi 99.6 3.2E-15 1.1E-19 113.9 10.9 80 15-98 43-126 (164)
347 2bz2_A Negative elongation fac 99.6 2.3E-15 7.8E-20 110.1 8.9 81 10-98 31-113 (121)
348 3pgw_A U1-A; protein-RNA compl 99.6 3.6E-15 1.2E-19 124.3 10.6 84 102-188 5-92 (282)
349 3beg_B Splicing factor, argini 99.6 9.7E-16 3.3E-20 111.0 6.1 75 16-97 14-95 (115)
350 2diu_A KIAA0430 protein; struc 99.6 4.8E-15 1.6E-19 101.7 8.8 74 15-98 5-86 (96)
351 3zzy_A Polypyrimidine tract-bi 99.6 1.5E-14 5E-19 106.3 11.3 79 16-99 26-109 (130)
352 2e5i_A Heterogeneous nuclear r 99.6 2.7E-14 9.3E-19 104.3 12.5 76 17-98 22-104 (124)
353 2dit_A HIV TAT specific factor 99.6 1.1E-14 3.7E-19 105.0 10.2 85 102-190 11-106 (112)
354 2pe8_A Splicing factor 45; RRM 99.6 1E-14 3.4E-19 103.8 9.8 81 15-95 5-93 (105)
355 3v4m_A Splicing factor U2AF 65 99.6 2.1E-15 7.2E-20 107.4 6.0 83 104-186 3-97 (105)
356 1fje_B Nucleolin RBD12, protei 99.6 9.1E-15 3.1E-19 113.2 9.3 79 13-96 94-174 (175)
357 2adc_A Polypyrimidine tract-bi 99.6 6.9E-15 2.4E-19 119.2 8.8 80 102-186 30-110 (229)
358 3sde_A Paraspeckle component 1 99.6 6.5E-15 2.2E-19 121.7 8.4 92 89-186 5-96 (261)
359 2dit_A HIV TAT specific factor 99.5 7.7E-14 2.6E-18 100.5 12.1 85 10-98 7-104 (112)
360 3ue2_A Poly(U)-binding-splicin 99.5 1.4E-14 4.9E-19 105.1 7.9 81 105-185 19-108 (118)
361 1jmt_A Splicing factor U2AF 35 99.5 3.1E-15 1.1E-19 106.3 3.2 72 111-183 20-103 (104)
362 1qm9_A Polypyrimidine tract-bi 99.5 9.9E-15 3.4E-19 115.4 6.0 77 105-186 2-79 (198)
363 2d9o_A DNAJ (HSP40) homolog, s 99.5 2.1E-13 7.2E-18 95.9 11.7 77 17-98 9-92 (100)
364 3u1l_A PRE-mRNA-splicing facto 99.5 2.4E-14 8.2E-19 116.0 7.3 80 13-98 129-231 (240)
365 2d9o_A DNAJ (HSP40) homolog, s 99.5 3.5E-13 1.2E-17 94.8 11.5 67 116-189 27-93 (100)
366 3ue2_A Poly(U)-binding-splicin 99.4 4.5E-13 1.5E-17 97.2 8.6 79 17-95 19-108 (118)
367 3v4m_A Splicing factor U2AF 65 99.4 3.7E-13 1.3E-17 95.7 7.7 80 16-95 3-96 (105)
368 1jmt_A Splicing factor U2AF 35 99.4 7.7E-14 2.6E-18 99.1 3.4 70 23-93 20-103 (104)
369 3s6e_A RNA-binding protein 39; 99.4 7.3E-13 2.5E-17 95.4 7.2 78 104-185 5-92 (114)
370 3tht_A Alkylated DNA repair pr 99.4 8.8E-13 3E-17 112.3 8.3 77 102-184 14-97 (345)
371 3tht_A Alkylated DNA repair pr 99.3 9.5E-12 3.3E-16 105.9 7.7 64 14-83 14-81 (345)
372 2dnr_A Synaptojanin-1; RRM dom 99.2 3.9E-11 1.3E-15 81.5 7.8 74 104-186 5-86 (91)
373 3s6e_A RNA-binding protein 39; 99.2 8E-11 2.7E-15 84.7 8.9 76 15-94 4-91 (114)
374 1owx_A Lupus LA protein, SS-B, 99.1 1.4E-10 4.9E-15 83.7 8.1 78 102-185 14-95 (121)
375 3dxb_A Thioredoxin N-terminall 99.0 3.6E-10 1.2E-14 90.8 7.6 68 118-185 141-212 (222)
376 2dnr_A Synaptojanin-1; RRM dom 99.0 1.1E-09 3.6E-14 74.4 8.2 74 15-96 4-86 (91)
377 1ufw_A Synaptojanin 2; RNP dom 99.0 3.5E-10 1.2E-14 77.2 5.6 74 103-185 12-94 (95)
378 1owx_A Lupus LA protein, SS-B, 99.0 1.2E-09 3.9E-14 78.9 7.4 72 16-93 16-93 (121)
379 1ufw_A Synaptojanin 2; RNP dom 98.8 5.3E-09 1.8E-13 71.3 5.9 73 14-94 11-93 (95)
380 2l9w_A U4/U6 snRNA-associated- 98.7 6.7E-08 2.3E-12 67.3 8.1 73 105-183 20-97 (117)
381 3dxb_A Thioredoxin N-terminall 98.7 3.8E-08 1.3E-12 78.9 7.7 65 30-94 141-211 (222)
382 2dhx_A Poly (ADP-ribose) polym 98.5 8.2E-07 2.8E-11 61.3 9.6 89 15-119 5-99 (104)
383 2l9w_A U4/U6 snRNA-associated- 98.4 2.2E-06 7.5E-11 59.7 8.6 71 16-92 19-96 (117)
384 1whv_A Poly(A)-specific ribonu 97.8 0.00017 6E-09 49.1 8.9 55 15-78 13-67 (100)
385 2dhx_A Poly (ADP-ribose) polym 97.8 0.00037 1.3E-08 48.0 10.4 77 104-189 6-87 (104)
386 1wey_A Calcipressin 1; structu 97.8 5.2E-05 1.8E-09 52.5 6.0 75 106-186 5-84 (104)
387 1uw4_A UPF3X; nonsense mediate 97.6 0.00013 4.4E-09 49.6 5.8 70 107-176 2-73 (91)
388 1wwh_A Nucleoporin 35, nucleop 97.5 0.00061 2.1E-08 48.4 8.2 74 103-184 21-95 (119)
389 1uw4_A UPF3X; nonsense mediate 97.4 0.00076 2.6E-08 45.8 8.0 63 19-81 2-68 (91)
390 1wey_A Calcipressin 1; structu 97.3 0.00094 3.2E-08 46.2 7.6 75 17-97 4-85 (104)
391 3ctr_A Poly(A)-specific ribonu 97.2 0.00054 1.9E-08 46.8 5.3 51 19-78 7-57 (101)
392 1wwh_A Nucleoporin 35, nucleop 97.0 0.003 1E-07 44.8 7.2 72 14-92 20-93 (119)
393 1whv_A Poly(A)-specific ribonu 96.9 0.0031 1.1E-07 42.9 6.6 54 106-168 16-69 (100)
394 2l08_A Regulator of nonsense t 96.8 0.00082 2.8E-08 45.9 2.9 71 106-176 9-81 (97)
395 3ctr_A Poly(A)-specific ribonu 96.6 0.0019 6.4E-08 44.1 4.0 53 108-169 8-60 (101)
396 3pq1_A Poly(A) RNA polymerase; 96.5 0.0014 4.7E-08 57.7 3.1 55 18-78 53-107 (464)
397 2l08_A Regulator of nonsense t 96.3 0.0037 1.3E-07 42.7 4.0 65 17-81 8-76 (97)
398 3p3d_A Nucleoporin 53; structu 96.0 0.006 2.1E-07 43.9 4.0 78 106-185 7-98 (132)
399 3pq1_A Poly(A) RNA polymerase; 95.8 0.0044 1.5E-07 54.5 2.9 57 105-167 52-108 (464)
400 3p3d_A Nucleoporin 53; structu 95.7 0.0094 3.2E-07 42.9 3.8 76 17-93 6-96 (132)
401 3d45_A Poly(A)-specific ribonu 91.0 0.6 2.1E-05 41.6 7.5 53 17-78 439-491 (507)
402 3d45_A Poly(A)-specific ribonu 87.4 1.4 4.8E-05 39.2 7.1 55 106-169 440-494 (507)
403 2g0c_A ATP-dependent RNA helic 52.0 9.7 0.00033 23.9 2.5 59 117-184 12-75 (76)
404 4eyt_A Telomerase associated p 46.5 60 0.0021 21.3 8.6 69 15-91 9-77 (129)
405 4e8u_A Putative uncharacterize 31.9 1.1E+02 0.0037 22.8 5.7 51 20-73 14-75 (172)
406 3j21_T 50S ribosomal protein L 30.3 1.1E+02 0.0039 19.8 5.8 56 108-166 24-81 (86)
407 3lpe_A Putative transcription 28.7 1.2E+02 0.0042 19.7 6.0 35 133-172 40-74 (92)
408 2i9x_A Putative septation prot 27.9 1E+02 0.0035 20.1 4.5 26 132-157 5-30 (87)
409 3fry_A Probable copper-exporti 24.7 1.2E+02 0.0039 18.0 6.4 55 106-167 6-60 (73)
410 1vq8_S 50S ribosomal protein L 24.1 1.5E+02 0.0051 19.1 5.5 56 108-166 23-80 (85)
411 3ts2_A Protein LIN-28 homolog 23.7 9.5 0.00032 27.8 -1.3 28 121-156 2-29 (148)
412 3h7h_B Transcription elongatio 23.4 61 0.0021 22.0 2.8 26 147-172 50-75 (106)
413 2ia9_A Putative septation prot 23.4 1.3E+02 0.0046 20.1 4.5 26 132-157 5-30 (100)
414 3mfb_A Uncharacterized protein 23.1 1.7E+02 0.0058 21.4 5.3 36 118-153 3-41 (157)
415 2i9z_A Putative septation prot 22.1 1.5E+02 0.0051 20.1 4.5 26 132-157 5-30 (105)
416 2lfv_A Protein DAMX; cell divi 24.8 23 0.00078 24.2 0.0 53 118-172 34-88 (106)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=2.7e-38 Score=251.18 Aligned_cols=181 Identities=33% Similarity=0.630 Sum_probs=154.9
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEE
Q 025858 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQV 88 (247)
Q Consensus 10 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i 88 (247)
+.+.++...++|||+|||.++|+++|+++|+.||.|.++.++.++.++.++|||||+|.+.++|.+|++ +++.++|+.|
T Consensus 5 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l 84 (196)
T 1l3k_A 5 ESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVV 84 (196)
T ss_dssp ---CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEEC
T ss_pred cCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEe
Confidence 344566788999999999999999999999999999999999999899999999999999999999999 7889999999
Q ss_pred EEeeecCCCCCC--CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHH
Q 025858 89 EIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166 (247)
Q Consensus 89 ~v~~~~~~~~~~--~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~ 166 (247)
.|.++.+..... ......++|||+|||.++|+++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+.
T Consensus 85 ~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 85 EPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp EEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred eeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH
Confidence 999987654322 223456899999999999999999999999999999999998899999999999999999999998
Q ss_pred cCCCcccCCcEEEEeecccCccccc
Q 025858 167 KGNMIDMAGTQVSLIGWSPVNQLLK 191 (247)
Q Consensus 167 ~l~~~~~~g~~l~v~~a~~~~~~~~ 191 (247)
. ++..+.|+.|.|.++.++.....
T Consensus 165 ~-~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 165 Q-KYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp C-SCCEETTEECEEEECC-------
T ss_pred h-CCcEECCEEEEEEecCChhHhcc
Confidence 6 89999999999999998777654
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=8.6e-39 Score=258.06 Aligned_cols=171 Identities=22% Similarity=0.444 Sum_probs=153.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEee
Q 025858 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKR 92 (247)
Q Consensus 15 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~ 92 (247)
..+.++|||+|||+++||++|+++|++||+|.+|++++|+.++.++|||||+|.+.++|.+|++ ++..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 3467899999999999999999999999999999999999999999999999999999999998 78899999999998
Q ss_pred ecCCCCCCCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcc
Q 025858 93 TIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMID 172 (247)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~ 172 (247)
+..... .......+|||+|||.++|+++|+++|++||.|..++++++. +.++|||||+|.+.++|.+|++.|||..
T Consensus 92 ~~~~~~--~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~ 167 (213)
T 4f02_A 92 SQRDPS--LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGML 167 (213)
T ss_dssp CCCCTH--HHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred cccccc--ccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCE
Confidence 865433 222345689999999999999999999999999999999985 4589999999999999999999999999
Q ss_pred cCCcEEEEeecccCccc
Q 025858 173 MAGTQVSLIGWSPVNQL 189 (247)
Q Consensus 173 ~~g~~l~v~~a~~~~~~ 189 (247)
+.|+.|+|.++.++...
T Consensus 168 ~~g~~i~V~~a~~~~~~ 184 (213)
T 4f02_A 168 LNDRKVFVGRFKSRKER 184 (213)
T ss_dssp ETTEECEEEECCCHHHH
T ss_pred ECCEEEEEEEcCCCccc
Confidence 99999999999876543
No 3
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=7.4e-39 Score=248.12 Aligned_cols=166 Identities=43% Similarity=0.799 Sum_probs=155.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHhccCccCCeEEEEeeecCC
Q 025858 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPK 96 (247)
Q Consensus 17 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~l~g~~i~v~~~~~~ 96 (247)
++++|||+|||.++|+++|+++|+.||.|.++++++++.+|.++|||||+|.+.++|.+|+++++.++|+.|.+.++.+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~ 81 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPR 81 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccch
Confidence 57899999999999999999999999999999999998899999999999999999999999888999999999987653
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCc
Q 025858 97 GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGT 176 (247)
Q Consensus 97 ~~~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~ 176 (247)
. .....++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|+|||+|.+.++|.+|++ +++..+.|+
T Consensus 82 ~----~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 156 (167)
T 2cjk_A 82 D----EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDR 156 (167)
T ss_dssp H----HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSS
T ss_pred h----hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCe
Confidence 2 23356799999999999999999999999999999999998899999999999999999999998 899999999
Q ss_pred EEEEeecccCc
Q 025858 177 QVSLIGWSPVN 187 (247)
Q Consensus 177 ~l~v~~a~~~~ 187 (247)
.|+|.++.+++
T Consensus 157 ~i~V~~a~pk~ 167 (167)
T 2cjk_A 157 KIEIKRAEPRH 167 (167)
T ss_dssp CEEEEECCCCC
T ss_pred EEEEeecCCCC
Confidence 99999998763
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-37 Score=238.88 Aligned_cols=164 Identities=23% Similarity=0.399 Sum_probs=152.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeeecCC
Q 025858 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIPK 96 (247)
Q Consensus 19 ~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~~~~ 96 (247)
++|||+|||.++|+++|+++|++||.|.+++++.++ ++.++|||||+|.+.++|.+|++ ++..+.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 689999999999999999999999999999999998 57899999999999999999996 888999999999998766
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCc
Q 025858 97 GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGT 176 (247)
Q Consensus 97 ~~~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~ 176 (247)
.. ....+.++|||+|||..+++++|+++|++||.|..+.++.+..+|.++|+|||+|.+.++|.+|+..|||..+.|+
T Consensus 80 ~~--~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 157 (166)
T 3md3_A 80 QQ--SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR 157 (166)
T ss_dssp CC--CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CC--CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCc
Confidence 54 3345678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeccc
Q 025858 177 QVSLIGWSP 185 (247)
Q Consensus 177 ~l~v~~a~~ 185 (247)
.|+|.+|.+
T Consensus 158 ~i~v~~a~~ 166 (166)
T 3md3_A 158 PLRINWAAK 166 (166)
T ss_dssp ECEEEESCC
T ss_pred EEEEEecCC
Confidence 999999863
No 5
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=8.3e-37 Score=236.15 Aligned_cols=163 Identities=28% Similarity=0.576 Sum_probs=152.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeeec
Q 025858 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTI 94 (247)
Q Consensus 17 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~~ 94 (247)
++++|||+|||+++|+++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|.+|++ ++..++|+.|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 46899999999999999999999999999999999999899999999999999999999998 7889999999999987
Q ss_pred CCCCCCCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccC
Q 025858 95 PKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMA 174 (247)
Q Consensus 95 ~~~~~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~ 174 (247)
+... ....++|+|+|||..+++++|+++|++||.|..++++.++.+|.++|+|||+|.+.++|.+|++.|||..+.
T Consensus 81 ~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 156 (167)
T 1fxl_A 81 PSSA----SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS 156 (167)
T ss_dssp CCCG----GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCcc----cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccC
Confidence 6532 345678999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CcE--EEEeec
Q 025858 175 GTQ--VSLIGW 183 (247)
Q Consensus 175 g~~--l~v~~a 183 (247)
|+. |+|.||
T Consensus 157 g~~~~i~v~~A 167 (167)
T 1fxl_A 157 GATEPITVKFA 167 (167)
T ss_dssp TCSSCCEEEEC
T ss_pred CCccceEEEeC
Confidence 975 888775
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=4.7e-37 Score=238.05 Aligned_cols=163 Identities=26% Similarity=0.493 Sum_probs=153.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeeec
Q 025858 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTI 94 (247)
Q Consensus 17 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~~ 94 (247)
++++|||+|||.++|+++|+++|+.||.|.++++++++.++.++|||||+|.+.++|.+|++ ++..++|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 57899999999999999999999999999999999998899999999999999999999997 8889999999999987
Q ss_pred CCCCCCCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccC
Q 025858 95 PKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMA 174 (247)
Q Consensus 95 ~~~~~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~ 174 (247)
+... ....++|+|+|||..+++++|+++|++||.|..+.+++++.++.++|+|||+|.+.++|.+|+..|||..+.
T Consensus 82 ~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 157 (168)
T 1b7f_A 82 PGGE----SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPE 157 (168)
T ss_dssp CCSS----TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCcc----cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEec
Confidence 6543 345789999999999999999999999999999999999888999999999999999999999999999998
Q ss_pred C--cEEEEeec
Q 025858 175 G--TQVSLIGW 183 (247)
Q Consensus 175 g--~~l~v~~a 183 (247)
| ++|+|.+|
T Consensus 158 g~~~~l~V~~A 168 (168)
T 1b7f_A 158 GGSQPLSVRLA 168 (168)
T ss_dssp TCSSCCEEEEC
T ss_pred CCCeEEEEEeC
Confidence 8 99999875
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1.4e-36 Score=244.77 Aligned_cols=175 Identities=21% Similarity=0.460 Sum_probs=155.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeee
Q 025858 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRT 93 (247)
Q Consensus 16 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~ 93 (247)
...++|||+|||.++|+++|+++|+.||.|.++++++++.++.++|||||+|.+.++|.+|++ ++..++|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 456799999999999999999999999999999999999899999999999999999999998 788999999999887
Q ss_pred cCCCCCC-------CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHH
Q 025858 94 IPKGSGQ-------SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166 (247)
Q Consensus 94 ~~~~~~~-------~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~ 166 (247)
....... ......++|||+|||.++++++|+++|++||.|..++++++..+|.++|||||+|.+.++|.+|+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 106 SNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp SCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 6543211 122356799999999999999999999999999999999998899999999999999999999999
Q ss_pred cCCCcccCCcEEEEeecccCcccc
Q 025858 167 KGNMIDMAGTQVSLIGWSPVNQLL 190 (247)
Q Consensus 167 ~l~~~~~~g~~l~v~~a~~~~~~~ 190 (247)
.|||..+.|+.|+|.++.++....
T Consensus 186 ~l~g~~~~g~~i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 186 SMNLFDLGGQYLRVGKAVTPPMPL 209 (216)
T ss_dssp HHTTCBCSSSBCEEEECSSCSSTT
T ss_pred HccCCEeCCcEEEEEEecCCCCCC
Confidence 999999999999999998765443
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=5.2e-35 Score=227.85 Aligned_cols=164 Identities=19% Similarity=0.395 Sum_probs=145.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCC--CcceEEEEEecCHHHHHHHHh--ccCccC---CeEEE
Q 025858 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTG--QPRGFGFITYADPSVVDKVIE--DTHIIN---GKQVE 89 (247)
Q Consensus 17 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~--~~~g~afV~f~~~~~a~~a~~--~~~~l~---g~~i~ 89 (247)
++++|||+|||+++|+++|+++|++||.|.++++++++.++ .++|||||+|.+.++|.+|++ ++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56899999999999999999999999999999999999776 899999999999999999997 554444 57777
Q ss_pred EeeecCCCCCCCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCC
Q 025858 90 IKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN 169 (247)
Q Consensus 90 v~~~~~~~~~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~ 169 (247)
+.++.+... .....++|||+|||..+|+++|+++|++||.|.++.+++++ +|.++|||||+|.+.++|.+|+..||
T Consensus 82 ~~~~~~~~~---~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~ 157 (175)
T 3nmr_A 82 MKPADSEKN---NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMH 157 (175)
T ss_dssp EEECGGGCC---SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred Ecccccccc---ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhc
Confidence 877665433 23467899999999999999999999999999999999985 58999999999999999999999999
Q ss_pred CcccC---CcEEEEeecc
Q 025858 170 MIDMA---GTQVSLIGWS 184 (247)
Q Consensus 170 ~~~~~---g~~l~v~~a~ 184 (247)
|..+. |++|+|.+|.
T Consensus 158 g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 158 QAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp TSCCCTTCSSCCEEEECC
T ss_pred CCcccCCCCCCeEEEecC
Confidence 98876 4899999874
No 9
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=1.9e-35 Score=230.87 Aligned_cols=168 Identities=20% Similarity=0.362 Sum_probs=148.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEE
Q 025858 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEI 90 (247)
Q Consensus 12 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v 90 (247)
..+..+.++|||+|||.++|+++|+++|++||.+.. .++.+..++.++|||||+|.+.++|.+|++ ++..+.|+.|.|
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v 85 (175)
T 1fje_B 7 GSESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 85 (175)
T ss_dssp SSSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEE
Confidence 345678899999999999999999999999997766 344444578899999999999999999998 888999999999
Q ss_pred eeecCCCCCCCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCC
Q 025858 91 KRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNM 170 (247)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~ 170 (247)
.++.+... ......++|||+|||.++++++|+++|++||.|..+ ..++.++|+|||+|.+.++|.+|+..|||
T Consensus 86 ~~~~~~~~--~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 1fje_B 86 EKPKGRDS--KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQG 158 (175)
T ss_dssp ECCCCSSC--STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTE
T ss_pred ecCCCccc--cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCC
Confidence 99876544 334567899999999999999999999999988766 46688999999999999999999999999
Q ss_pred cccCCcEEEEeecccCc
Q 025858 171 IDMAGTQVSLIGWSPVN 187 (247)
Q Consensus 171 ~~~~g~~l~v~~a~~~~ 187 (247)
..+.|+.|+|.++.+++
T Consensus 159 ~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 159 AEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp EEETTEEEEEEECSSCC
T ss_pred CEECCeEEEEEecCCCC
Confidence 99999999999998763
No 10
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=2.3e-34 Score=223.85 Aligned_cols=159 Identities=20% Similarity=0.440 Sum_probs=144.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccC----C-------CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCcc
Q 025858 16 ASPGKIFIGGLPKDTTYATFNKHFGKY----G-------DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHII 83 (247)
Q Consensus 16 ~~~~~l~v~nLp~~~te~~l~~~f~~~----G-------~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l 83 (247)
+++++|||+|||+++|+++|+++|++| | .|.++.+. .++|||||+|.+.++|.+|+. ++..+
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~~~~~~~~ 75 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAMAFDGIIF 75 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHHHhCCcEe
Confidence 467899999999999999999999999 6 66666654 347999999999999999998 78899
Q ss_pred CCeEEEEeeecCCCCCCCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHH
Q 025858 84 NGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE 163 (247)
Q Consensus 84 ~g~~i~v~~~~~~~~~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ 163 (247)
+|+.|.|.++.+... ....++|||+|||..+++++|+++|++||.|..+.+++++.+|.++|+|||+|.+.++|.+
T Consensus 76 ~g~~i~v~~~~~~~~----~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~ 151 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP----LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQ 151 (172)
T ss_dssp TTEECEEECCSSCCC----CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHH
T ss_pred cCceeeecCCcccCC----CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHH
Confidence 999999998765433 2347899999999999999999999999999999999998899999999999999999999
Q ss_pred HHHcCCCcccCCcEEEEeecc
Q 025858 164 MLSKGNMIDMAGTQVSLIGWS 184 (247)
Q Consensus 164 ai~~l~~~~~~g~~l~v~~a~ 184 (247)
|+..|||..+.|+.|.|.+|.
T Consensus 152 A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 152 AIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHHHTTCEETTEECEEEECC
T ss_pred HHHHcCCCEECCeEEEEEeCC
Confidence 999999999999999999873
No 11
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=9.1e-34 Score=237.90 Aligned_cols=173 Identities=14% Similarity=0.264 Sum_probs=159.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeeec
Q 025858 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTI 94 (247)
Q Consensus 17 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~~ 94 (247)
..++|||+|||.++|+++|+++|+.||.|.++.++.++.+|.++|||||+|.+.++|.+|++ ++..++|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 45799999999999999999999999999999999999899999999999999999999996 8889999999999997
Q ss_pred CCCCCCCCCCccccEEEcCCCCCC-CHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCccc
Q 025858 95 PKGSGQSKDFKTKKIFVGGIPSSV-SEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDM 173 (247)
Q Consensus 95 ~~~~~~~~~~~~~~l~v~~l~~~~-t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~ 173 (247)
+.... ......++|||+|||.++ ++++|+++|++||.|..+.++++. +|.++|+|||+|.+.++|.+|+..|||..+
T Consensus 174 ~~~~~-~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 251 (284)
T 3smz_A 174 AGQLT-PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSL 251 (284)
T ss_dssp GGGCC-TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCCC-cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Confidence 75543 334567899999999996 999999999999999999999986 699999999999999999999999999999
Q ss_pred CCcEEEEeecccCccccc
Q 025858 174 AGTQVSLIGWSPVNQLLK 191 (247)
Q Consensus 174 ~g~~l~v~~a~~~~~~~~ 191 (247)
.|+.|+|.++.++.....
T Consensus 252 ~g~~l~v~~a~~~~~~~~ 269 (284)
T 3smz_A 252 GGSHLRVSFCAPGPPGRS 269 (284)
T ss_dssp TTEECEEEECCSSSCHHH
T ss_pred CCeEEEEEEecCCCcccc
Confidence 999999999998776443
No 12
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=1.2e-33 Score=224.55 Aligned_cols=167 Identities=19% Similarity=0.406 Sum_probs=146.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccC----C-------CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCcc
Q 025858 16 ASPGKIFIGGLPKDTTYATFNKHFGKY----G-------DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHII 83 (247)
Q Consensus 16 ~~~~~l~v~nLp~~~te~~l~~~f~~~----G-------~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l 83 (247)
+.+++|||+|||.++|+++|+++|+.| | .|.++.+ +.++|||||+|.+.++|.+|+. ++..+
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al~l~g~~~ 75 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAMAFDGIIF 75 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHGGGTTEEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHHHhcCCEE
Confidence 467999999999999999999999999 4 4555444 4568999999999999999998 78899
Q ss_pred CCeEEEEeeecCCCCCC----------------CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCc
Q 025858 84 NGKQVEIKRTIPKGSGQ----------------SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRS 147 (247)
Q Consensus 84 ~g~~i~v~~~~~~~~~~----------------~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~ 147 (247)
+|+.|.|.++.+..... ......++|||+|||..+++++|+++|++||.|..+.+++++.+|.+
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~ 155 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLS 155 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSE
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCc
Confidence 99999999986543211 11245689999999999999999999999999999999999889999
Q ss_pred eeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeecccCcc
Q 025858 148 RGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWSPVNQ 188 (247)
Q Consensus 148 ~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~~~ 188 (247)
+|||||+|.+.++|.+|+..|||..+.|+.|+|.++.++..
T Consensus 156 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 156 KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999999999999999999999999999999987654
No 13
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=9.4e-33 Score=231.48 Aligned_cols=164 Identities=15% Similarity=0.260 Sum_probs=145.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHH----HHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCe
Q 025858 13 GDGASPGKIFIGGLPKDTTYATFN----KHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGK 86 (247)
Q Consensus 13 ~~~~~~~~l~v~nLp~~~te~~l~----~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~ 86 (247)
.+..++++|||+|||.++|+++|+ ++|+.||.|.+|++++ ++.++|||||+|.+.++|.+|++ ++..+.|+
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 456789999999999999999977 8999999999999876 67899999999999999999997 78899999
Q ss_pred EEEEeeecCCCCC-------------------------------------------------------------------
Q 025858 87 QVEIKRTIPKGSG------------------------------------------------------------------- 99 (247)
Q Consensus 87 ~i~v~~~~~~~~~------------------------------------------------------------------- 99 (247)
.|+|.++......
T Consensus 81 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (282)
T 3pgw_A 81 PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ 160 (282)
T ss_pred EEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCC
Confidence 9999998654320
Q ss_pred ----------------------------------------CCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEE
Q 025858 100 ----------------------------------------QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQII 139 (247)
Q Consensus 100 ----------------------------------------~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~ 139 (247)
.......++|||+|||..+++++|+++|++||.|.+++++
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~ 240 (282)
T 3pgw_A 161 PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240 (282)
T ss_pred CCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe
Confidence 0112245789999999999999999999999999999998
Q ss_pred ecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccC-CcEEEEeecc
Q 025858 140 RDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMA-GTQVSLIGWS 184 (247)
Q Consensus 140 ~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~-g~~l~v~~a~ 184 (247)
.++ +|+|||+|.+.++|.+|+..|||..+. |+.|+|.|++
T Consensus 241 ~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 241 PGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred cCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 663 589999999999999999999999999 9999999985
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=2.4e-33 Score=224.75 Aligned_cols=161 Identities=17% Similarity=0.228 Sum_probs=138.6
Q ss_pred CCCCeEEEcCCC-CCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEee
Q 025858 16 ASPGKIFIGGLP-KDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKR 92 (247)
Q Consensus 16 ~~~~~l~v~nLp-~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~ 92 (247)
.++++|||+||| .++|+++|+++|++||.|.+++++++ .+|||||+|.+.++|++|++ ++..+.|+.|+|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 467899999999 89999999999999999999999865 37999999999999999998 88999999999999
Q ss_pred ecCCCCCCC---------------------------------CCCccccEEEcCCCCCCCHHHHHHHHHhcCCe--EEEE
Q 025858 93 TIPKGSGQS---------------------------------KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKV--LEHQ 137 (247)
Q Consensus 93 ~~~~~~~~~---------------------------------~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i--~~v~ 137 (247)
+........ ...+.++|||+|||+++|+++|+++|++||.| .+++
T Consensus 77 s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~ 156 (205)
T 3tyt_A 77 SKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVK 156 (205)
T ss_dssp CSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEE
T ss_pred ccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEE
Confidence 854321000 01234679999999999999999999999998 8999
Q ss_pred EEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCc----EEEEeec
Q 025858 138 IIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGT----QVSLIGW 183 (247)
Q Consensus 138 i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~----~l~v~~a 183 (247)
++.+. +.++|+|||+|.+.++|.+|+..|||..+.|+ ++.|+++
T Consensus 157 ~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 157 VFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp ECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 98875 55679999999999999999999999999887 4666654
No 15
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=2.8e-33 Score=235.79 Aligned_cols=169 Identities=14% Similarity=0.231 Sum_probs=146.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeee
Q 025858 17 SPGKIFIGGLPKDTTYATFNKHFGKYG-DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRT 93 (247)
Q Consensus 17 ~~~~l~v~nLp~~~te~~l~~~f~~~G-~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~ 93 (247)
..++|||+|||.++|+++|+++|+.|| .|.++.++.++ .+.++|||||+|.+.++|.+|++ ++..++|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 578999999999999999999999999 99999999988 48899999999999999999998 888999999999998
Q ss_pred cCCCCCC---CCCCccccEEEcCCCCC-CCHHHHHHHHHhcCCeEEEEEEecCC-CCCceeEEEEEEcCHHHHHHHHHcC
Q 025858 94 IPKGSGQ---SKDFKTKKIFVGGIPSS-VSEDELKNFFSKYGKVLEHQIIRDHE-TNRSRGFGFVIFDSEEVVDEMLSKG 168 (247)
Q Consensus 94 ~~~~~~~---~~~~~~~~l~v~~l~~~-~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l 168 (247)
.+..... ......++|||+|||.. +++++|+++|++||.|..++++++.. ||.++|+|||+|.+.++|.+|+ .|
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l 273 (292)
T 2ghp_A 195 NPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QM 273 (292)
T ss_dssp CCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GG
T ss_pred CCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hh
Confidence 7765432 23346789999999999 99999999999999999999999876 6899999999999999999999 99
Q ss_pred CCcccCCcEEEEeecccCc
Q 025858 169 NMIDMAGTQVSLIGWSPVN 187 (247)
Q Consensus 169 ~~~~~~g~~l~v~~a~~~~ 187 (247)
||..+.|+.|.|.++.+++
T Consensus 274 ~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 274 NRSLLGNREISVSLADKKP 292 (292)
T ss_dssp TTEEETTEEEEEEECCCCC
T ss_pred cCCEECCcEEEEEEecCCC
Confidence 9999999999999998764
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=9.5e-33 Score=225.02 Aligned_cols=164 Identities=20% Similarity=0.285 Sum_probs=144.4
Q ss_pred CCCCCCCeEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEE
Q 025858 13 GDGASPGKIFIGGLPK-DTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVE 89 (247)
Q Consensus 13 ~~~~~~~~l~v~nLp~-~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~ 89 (247)
....++++|||+|||. ++|+++|+++|+.||.|.++++++++ +|||||+|.+.++|.+|++ ++..+.|+.|.
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3446789999999999 99999999999999999999999875 7899999999999999997 78899999999
Q ss_pred EeeecCCCCCCC-------------------------------CCCccccEEEcCCCCCCCHHHHHHHHHhcC-CeEEEE
Q 025858 90 IKRTIPKGSGQS-------------------------------KDFKTKKIFVGGIPSSVSEDELKNFFSKYG-KVLEHQ 137 (247)
Q Consensus 90 v~~~~~~~~~~~-------------------------------~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G-~i~~v~ 137 (247)
|.++.+...... ...+.++|||+|||..+++++|+++|++|| .|..++
T Consensus 104 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~ 183 (229)
T 2adc_A 104 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFK 183 (229)
T ss_dssp EECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEE
T ss_pred EEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEE
Confidence 999875421100 012367899999999999999999999999 999999
Q ss_pred EEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccC-CcEEEEeecccC
Q 025858 138 IIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMA-GTQVSLIGWSPV 186 (247)
Q Consensus 138 i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~-g~~l~v~~a~~~ 186 (247)
++.+ .+|+|||+|.+.++|.+|+..|||..+. |+.|+|.++.++
T Consensus 184 i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 184 FFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp ECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 9664 3689999999999999999999999999 999999998764
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=1.4e-32 Score=231.47 Aligned_cols=165 Identities=15% Similarity=0.201 Sum_probs=139.8
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEE
Q 025858 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVE 89 (247)
Q Consensus 11 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~ 89 (247)
....+.+.++|||+|||.++|+++|+++|+.||.|.+++++.++.+ ++|||||+|.+.++|.+|++ ++..++|+.|.
T Consensus 34 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~ 111 (292)
T 2ghp_A 34 ALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEII 111 (292)
T ss_dssp --------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEE
Confidence 3445677899999999999999999999999999999999998733 58999999999999999998 88899999999
Q ss_pred EeeecCCCCCCCCCCccccEEEcCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcC
Q 025858 90 IKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYG-KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168 (247)
Q Consensus 90 v~~~~~~~~~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l 168 (247)
|.++ ..++|||+|||..+++++|+++|++|| .|..+.++.++. +.++|||||+|.+.++|.+|+..|
T Consensus 112 v~~~-----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l 179 (292)
T 2ghp_A 112 VSHL-----------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKL 179 (292)
T ss_dssp EEEC-----------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHH
T ss_pred EEEC-----------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHh
Confidence 9986 367999999999999999999999999 999999998865 789999999999999999999999
Q ss_pred CCcccCCcEEEEeecccCccc
Q 025858 169 NMIDMAGTQVSLIGWSPVNQL 189 (247)
Q Consensus 169 ~~~~~~g~~l~v~~a~~~~~~ 189 (247)
||..+.|+.|.|.++.++...
T Consensus 180 ~g~~~~g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 180 NGLKIEGYTLVTKVSNPLEKS 200 (292)
T ss_dssp TTCEETTEECEEEECCCC---
T ss_pred CCCEeCCcEEEEEECCCCccc
Confidence 999999999999999876543
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=100.00 E-value=4.9e-32 Score=225.01 Aligned_cols=161 Identities=24% Similarity=0.440 Sum_probs=144.6
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeE
Q 025858 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQ 87 (247)
Q Consensus 10 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~ 87 (247)
+......+.++|||+|||+++|+++|+++|+.||.|.++.+.++ +|||||+|.+.++|.+|+. ++..+.|+.
T Consensus 14 p~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~ 87 (261)
T 3sde_A 14 PGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRP 87 (261)
T ss_dssp TTCCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCce
Confidence 34455567789999999999999999999999999999999643 6899999999999999998 888999999
Q ss_pred EEEeeecCCCCCCCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHc
Q 025858 88 VEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167 (247)
Q Consensus 88 i~v~~~~~~~~~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~ 167 (247)
|.|.++.+ .++|||+|||..+|+++|+++|++||.|..+.++.+ .+|.++|||||+|.+.++|.+|+..
T Consensus 88 l~v~~a~~----------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~ 156 (261)
T 3sde_A 88 LRIRFATH----------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALER 156 (261)
T ss_dssp CEEEECCC----------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred eEeeeccc----------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 99999853 568999999999999999999999999999999999 5799999999999999999999999
Q ss_pred CCCcc-cC---CcEEEEeecccCc
Q 025858 168 GNMID-MA---GTQVSLIGWSPVN 187 (247)
Q Consensus 168 l~~~~-~~---g~~l~v~~a~~~~ 187 (247)
||+.. +. |+.|.|.++.+..
T Consensus 157 l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 157 CGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HHHSCEESSSSCCBCEEEECCCEE
T ss_pred hcCCeEEecCCCceEEEeeccccC
Confidence 95544 44 9999999987654
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=9.1e-32 Score=225.69 Aligned_cols=156 Identities=15% Similarity=0.286 Sum_probs=145.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeee
Q 025858 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRT 93 (247)
Q Consensus 16 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~ 93 (247)
.++++|||+|||.++|+++|+++|+.|| |.++.+ +.++|||||+|.+.++|.+|++ ++..+.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 4678999999999999999999999999 888887 4567899999999999999997 788999999999985
Q ss_pred cCCCCCCCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCccc
Q 025858 94 IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDM 173 (247)
Q Consensus 94 ~~~~~~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~ 173 (247)
. ..++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..+
T Consensus 93 ~----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~ 162 (284)
T 3smz_A 93 P----------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPL 162 (284)
T ss_dssp C----------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred C----------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3 347899999999999999999999999999999999998999999999999999999999999999999
Q ss_pred CCcEEEEeecccCcc
Q 025858 174 AGTQVSLIGWSPVNQ 188 (247)
Q Consensus 174 ~g~~l~v~~a~~~~~ 188 (247)
.|+.|.|.++.++..
T Consensus 163 ~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 163 GPRTLYVHWTDAGQL 177 (284)
T ss_dssp TTEECEEEECCGGGC
T ss_pred CCcEEEEEECCCCCC
Confidence 999999999987654
No 20
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=1.6e-32 Score=218.43 Aligned_cols=160 Identities=19% Similarity=0.283 Sum_probs=141.9
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeee
Q 025858 17 SPGKIFIGGLPK-DTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRT 93 (247)
Q Consensus 17 ~~~~l~v~nLp~-~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~ 93 (247)
++++|||+|||+ ++|+++|+++|+.||.|.++++++++ +|||||+|.+.++|.+|++ ++..++|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 468999999999 99999999999999999999998875 6899999999999999997 788999999999998
Q ss_pred cCCCCCCC-------------------------------CCCccccEEEcCCCCCCCHHHHHHHHHhcC-CeEEEEEEec
Q 025858 94 IPKGSGQS-------------------------------KDFKTKKIFVGGIPSSVSEDELKNFFSKYG-KVLEHQIIRD 141 (247)
Q Consensus 94 ~~~~~~~~-------------------------------~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G-~i~~v~i~~~ 141 (247)
.+...... ...+.++|||+|||..+++++|+++|++|| .|..++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 75421100 013467899999999999999999999999 9999999765
Q ss_pred CCCCCceeEEEEEEcCHHHHHHHHHcCCCcccC-CcEEEEeecccC
Q 025858 142 HETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMA-GTQVSLIGWSPV 186 (247)
Q Consensus 142 ~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~-g~~l~v~~a~~~ 186 (247)
.+|+|||+|.+.++|.+|+..|||..+. |+.|+|.++.++
T Consensus 157 -----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 -----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp -----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred -----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 3789999999999999999999999999 999999998764
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.93 E-value=6.2e-25 Score=168.68 Aligned_cols=142 Identities=19% Similarity=0.216 Sum_probs=113.7
Q ss_pred EEEEeecCCCCCcceEEEEEecCHHHHHHHHh--cc-CccCCeEE------EEeeecCC--CCCCCCCCccccEEEcCCC
Q 025858 47 DSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DT-HIINGKQV------EIKRTIPK--GSGQSKDFKTKKIFVGGIP 115 (247)
Q Consensus 47 ~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~-~~l~g~~i------~v~~~~~~--~~~~~~~~~~~~l~v~~l~ 115 (247)
++.++.+. ..++|||||+|.+.++|++|++ ++ ..+++... ........ ..........++|||+|||
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 46777775 3689999999999999999997 22 23333222 11111111 1122333557899999999
Q ss_pred CCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeecccCcccc
Q 025858 116 SSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWSPVNQLL 190 (247)
Q Consensus 116 ~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~~~~~ 190 (247)
.++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.++....
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 154 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 154 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCCC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 999999999999999999999999998899999999999999999999999999999999999999998765543
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.89 E-value=2.6e-23 Score=151.30 Aligned_cols=104 Identities=17% Similarity=0.440 Sum_probs=73.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeeec
Q 025858 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTI 94 (247)
Q Consensus 17 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~~ 94 (247)
.+.+|||+|||+++||++|+++|++||.|.++++++++ +.++|||||+|.+.++|++|++ ++..++|+.|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 46789999999999999999999999999999999986 4589999999999999999997 7889999999999987
Q ss_pred CCCCCC----CCCCccccEEEcCCCCCCCHHH
Q 025858 95 PKGSGQ----SKDFKTKKIFVGGIPSSVSEDE 122 (247)
Q Consensus 95 ~~~~~~----~~~~~~~~l~v~~l~~~~t~~~ 122 (247)
+..... ......++|||+|||+++|++-
T Consensus 82 ~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC----------------------------
T ss_pred CccccccccccccCCCCceEeCCCCCCccccc
Confidence 655432 1223456799999999999863
No 23
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.89 E-value=7.1e-23 Score=155.88 Aligned_cols=126 Identities=17% Similarity=0.229 Sum_probs=110.0
Q ss_pred CCCcceEEEEEecCHHHHHHHHh---ccCccCCeEEEEeeecCCC------------CCCCCCCccccEEEcCCCCCCCH
Q 025858 56 TGQPRGFGFITYADPSVVDKVIE---DTHIINGKQVEIKRTIPKG------------SGQSKDFKTKKIFVGGIPSSVSE 120 (247)
Q Consensus 56 ~~~~~g~afV~f~~~~~a~~a~~---~~~~l~g~~i~v~~~~~~~------------~~~~~~~~~~~l~v~~l~~~~t~ 120 (247)
....+|+++|+|.+.++|++|++ ++..++| .+.+.++.... .........++|||+|||+++++
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 34678999999999999999997 5679999 99998775421 12234456789999999999999
Q ss_pred HHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeecccCc
Q 025858 121 DELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWSPVN 187 (247)
Q Consensus 121 ~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~~ 187 (247)
++|+++|++||.|.+++++++ ++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.++.
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999999999999999876 68899999999999999999999999999999999998754
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.88 E-value=1.4e-22 Score=143.38 Aligned_cols=82 Identities=24% Similarity=0.485 Sum_probs=78.6
Q ss_pred CccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeec
Q 025858 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGW 183 (247)
Q Consensus 104 ~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 183 (247)
...++|||+|||.++|+++|+++|++||.|.++++++++.+|.++|||||+|.+.++|.+|++.|||..+.|+.|+|.+|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 025858 184 SP 185 (247)
Q Consensus 184 ~~ 185 (247)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=4.9e-22 Score=140.65 Aligned_cols=95 Identities=19% Similarity=0.457 Sum_probs=76.5
Q ss_pred CCCCCCCCCCCCCC-CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-
Q 025858 1 MGSKSKSDNPHTGD-GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE- 78 (247)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~- 78 (247)
||+..-...+..++ ..+.++|||+|||+++||++|+++|++||.|.++++++++.+|.++|||||+|.+.++|.+|++
T Consensus 1 ~gsd~~~~~~~~en~~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ 80 (99)
T 4fxv_A 1 MGSDKIHHHHHHENLYFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80 (99)
T ss_dssp ---------------CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCcccccccccccccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHH
Confidence 45544443333333 3456789999999999999999999999999999999999899999999999999999999997
Q ss_pred -ccCccCCeEEEEeeecC
Q 025858 79 -DTHIINGKQVEIKRTIP 95 (247)
Q Consensus 79 -~~~~l~g~~i~v~~~~~ 95 (247)
++..++|+.|+|.++.|
T Consensus 81 lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 81 LNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp HTTCEETTEECEEEECCB
T ss_pred hCCCEECCEEEEEEEeeC
Confidence 78899999999999875
No 26
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.87 E-value=2e-22 Score=140.47 Aligned_cols=88 Identities=19% Similarity=0.437 Sum_probs=81.1
Q ss_pred cccEEEcCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcC-CCcccCCcEEEEeec
Q 025858 106 TKKIFVGGIPSSVSEDELKNFFSKYG-KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG-NMIDMAGTQVSLIGW 183 (247)
Q Consensus 106 ~~~l~v~~l~~~~t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l-~~~~~~g~~l~v~~a 183 (247)
+++|||+|||.++|+++|+++|++|| .|.+|++++++.+|.++|||||+|.+.++|.+|++.+ |+..+.|++|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 8999999999999999999999999999999999987 466799999999999
Q ss_pred ccCcccccce
Q 025858 184 SPVNQLLKGY 193 (247)
Q Consensus 184 ~~~~~~~~~~ 193 (247)
.+++.....|
T Consensus 81 ~~~~~~~~DW 90 (91)
T 2lxi_A 81 DPKPKINEDW 90 (91)
T ss_dssp CSCCCCSCSC
T ss_pred CCCCCCCCCC
Confidence 9988776654
No 27
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.85 E-value=1.3e-21 Score=146.33 Aligned_cols=124 Identities=18% Similarity=0.169 Sum_probs=85.1
Q ss_pred EEEEEecCHHHHHHHHhc--cCccCCeEEEEeeecCCCCCCCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEE
Q 025858 62 FGFITYADPSVVDKVIED--THIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQII 139 (247)
Q Consensus 62 ~afV~f~~~~~a~~a~~~--~~~l~g~~i~v~~~~~~~~~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~ 139 (247)
++|+++.+...+..|+.+ +....|+. ...+. .......+.++|||+|||.++|+++|+++|++||.|..|.++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~----~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~ 80 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYG----RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIP 80 (135)
T ss_dssp ------------------------------CCSC----CSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECC
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC-CCCcC----CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 678888888888888873 32333332 12222 223445567899999999999999999999999999999999
Q ss_pred ecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeecccCcccc
Q 025858 140 RDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWSPVNQLL 190 (247)
Q Consensus 140 ~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~~~~~ 190 (247)
.++.++.++|||||+|.+.++|.+|+..||+..+.|+.|+|.++.++....
T Consensus 81 ~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 81 RDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp CCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred ecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 998899999999999999999999999999999999999999998765543
No 28
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.85 E-value=2.6e-21 Score=139.45 Aligned_cols=86 Identities=22% Similarity=0.258 Sum_probs=80.9
Q ss_pred CccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeec
Q 025858 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGW 183 (247)
Q Consensus 104 ~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 183 (247)
.+.++|||+|||.++++++|+++|++||.|.+++|++|+.|++++|||||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCccc
Q 025858 184 SPVNQL 189 (247)
Q Consensus 184 ~~~~~~ 189 (247)
......
T Consensus 84 ~~~~~~ 89 (110)
T 3s8s_A 84 IKGQQR 89 (110)
T ss_dssp STTHHH
T ss_pred CCCcHH
Confidence 765443
No 29
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=2.2e-21 Score=135.16 Aligned_cols=81 Identities=21% Similarity=0.419 Sum_probs=74.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh---ccCccCCeEEEEeee
Q 025858 18 PGKIFIGGLPKDTTYATFNKHFGKYG-DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE---DTHIINGKQVEIKRT 93 (247)
Q Consensus 18 ~~~l~v~nLp~~~te~~l~~~f~~~G-~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~---~~~~l~g~~i~v~~~ 93 (247)
+++|||+|||+++||++|+++|++|| .|.++++++++.++.++|||||+|.+.++|.+|++ ++..++|+.|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 89999999999999999999999999999999997 344799999999999
Q ss_pred cCCCC
Q 025858 94 IPKGS 98 (247)
Q Consensus 94 ~~~~~ 98 (247)
.+++.
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87654
No 30
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=129.89 Aligned_cols=83 Identities=18% Similarity=0.361 Sum_probs=77.1
Q ss_pred CccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeec
Q 025858 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGW 183 (247)
Q Consensus 104 ~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 183 (247)
.+.++|||+|||.++++++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35679999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccC
Q 025858 184 SPV 186 (247)
Q Consensus 184 ~~~ 186 (247)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 875
No 31
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=5.2e-20 Score=130.30 Aligned_cols=95 Identities=21% Similarity=0.369 Sum_probs=84.8
Q ss_pred CCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--cc
Q 025858 3 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DT 80 (247)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~ 80 (247)
+..........+..+.++|||+|||.++|+++|+++|++||.|.++.++.++ ++.++|||||+|.+.++|.+|++ ++
T Consensus 2 ssg~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g 80 (100)
T 2do4_A 2 SSGSSGVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDG 80 (100)
T ss_dssp CCCCSSCCCCSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCCCcCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCC
Confidence 4444455566677788999999999999999999999999999999999998 89999999999999999999997 78
Q ss_pred CccCCeEEEEeeecCCCC
Q 025858 81 HIINGKQVEIKRTIPKGS 98 (247)
Q Consensus 81 ~~l~g~~i~v~~~~~~~~ 98 (247)
..++|+.|+|.++.+...
T Consensus 81 ~~~~g~~l~v~~a~~~~~ 98 (100)
T 2do4_A 81 MTIKENIIKVAISNSGPS 98 (100)
T ss_dssp EESSSCEEEEEECCCCSC
T ss_pred CEECCEEEEEEECCCCCC
Confidence 899999999999987643
No 32
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.84 E-value=1.8e-20 Score=127.97 Aligned_cols=81 Identities=25% Similarity=0.470 Sum_probs=78.1
Q ss_pred ccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeecccC
Q 025858 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWSPV 186 (247)
Q Consensus 107 ~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~ 186 (247)
.+|||+|||.++++++|+++|++||.|.++.+++++.++.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred c
Q 025858 187 N 187 (247)
Q Consensus 187 ~ 187 (247)
+
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 5
No 33
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.83 E-value=4.9e-20 Score=133.78 Aligned_cols=91 Identities=19% Similarity=0.372 Sum_probs=84.5
Q ss_pred CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
....+.++|||+|||..+++++|+++|++||.|..|.+++++.++.++|||||+|.+.++|.+|+..||+..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 44557889999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred eecccCccccc
Q 025858 181 IGWSPVNQLLK 191 (247)
Q Consensus 181 ~~a~~~~~~~~ 191 (247)
.++.++.....
T Consensus 90 ~~a~~~~~~~~ 100 (115)
T 2dgo_A 90 NWATRKPPAPK 100 (115)
T ss_dssp EESSCCCCCSC
T ss_pred EEccCCCCCCc
Confidence 99988766543
No 34
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.4e-20 Score=131.00 Aligned_cols=88 Identities=22% Similarity=0.323 Sum_probs=82.8
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEee
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIG 182 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 182 (247)
..+.++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccCcccc
Q 025858 183 WSPVNQLL 190 (247)
Q Consensus 183 a~~~~~~~ 190 (247)
+.++....
T Consensus 85 a~~~~~~~ 92 (99)
T 1whw_A 85 STIKKEAS 92 (99)
T ss_dssp CCCCSTTC
T ss_pred cCCCcccc
Confidence 99876654
No 35
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1e-19 Score=129.49 Aligned_cols=90 Identities=26% Similarity=0.436 Sum_probs=82.4
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHhccCccCCeEEE
Q 025858 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVE 89 (247)
Q Consensus 10 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~l~g~~i~ 89 (247)
.......+.++|||+|||.++|+++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|+++++.++|+.|.
T Consensus 7 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~ 86 (103)
T 2cqg_A 7 GVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCD 86 (103)
T ss_dssp SCSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEE
T ss_pred CCCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEE
Confidence 34455667899999999999999999999999999999999999988999999999999999999999988899999999
Q ss_pred EeeecCCCCC
Q 025858 90 IKRTIPKGSG 99 (247)
Q Consensus 90 v~~~~~~~~~ 99 (247)
|.++.++...
T Consensus 87 v~~a~~~~~~ 96 (103)
T 2cqg_A 87 CKLPNSKQSQ 96 (103)
T ss_dssp EECCCTTCCC
T ss_pred EEecCCCCcC
Confidence 9999876543
No 36
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=5.8e-20 Score=130.05 Aligned_cols=87 Identities=16% Similarity=0.386 Sum_probs=81.4
Q ss_pred CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
....+.++|||+|||..+++++|+++|++||.|..+.++.++ ++.++|||||+|.+.++|.+|+..||+..+.|+.|+|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 445567899999999999999999999999999999999997 8999999999999999999999999999999999999
Q ss_pred eecccCcc
Q 025858 181 IGWSPVNQ 188 (247)
Q Consensus 181 ~~a~~~~~ 188 (247)
.++.++..
T Consensus 91 ~~a~~~~~ 98 (100)
T 2do4_A 91 AISNSGPS 98 (100)
T ss_dssp EECCCCSC
T ss_pred EECCCCCC
Confidence 99987654
No 37
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.2e-20 Score=131.47 Aligned_cols=90 Identities=17% Similarity=0.275 Sum_probs=83.7
Q ss_pred CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
....+.++|||+|||..+++++|+++|++||.|..|.+++++.++.++|||||+|.+.++|.+|+..||+..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34556889999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred eecccCcccc
Q 025858 181 IGWSPVNQLL 190 (247)
Q Consensus 181 ~~a~~~~~~~ 190 (247)
.++.++....
T Consensus 90 ~~a~~~~~~~ 99 (103)
T 2cq0_A 90 EWAKPSTNSG 99 (103)
T ss_dssp EESSCCCCSC
T ss_pred EECCCCCCCC
Confidence 9998876543
No 38
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.2e-20 Score=128.56 Aligned_cols=85 Identities=28% Similarity=0.484 Sum_probs=80.1
Q ss_pred CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
....+.++|||+|||..+++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|.+|+..||+..+.|+.|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccc
Q 025858 181 IGWSP 185 (247)
Q Consensus 181 ~~a~~ 185 (247)
.++..
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99864
No 39
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.2e-20 Score=131.94 Aligned_cols=90 Identities=31% Similarity=0.455 Sum_probs=83.7
Q ss_pred CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
......++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..||+..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34456789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred eecccCcccc
Q 025858 181 IGWSPVNQLL 190 (247)
Q Consensus 181 ~~a~~~~~~~ 190 (247)
.++.++....
T Consensus 90 ~~a~~~~~~~ 99 (105)
T 1x5u_A 90 NKASAHNKNL 99 (105)
T ss_dssp EETTTTSCCC
T ss_pred EECCCCCcCC
Confidence 9998876543
No 40
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.83 E-value=9.3e-20 Score=132.34 Aligned_cols=90 Identities=20% Similarity=0.423 Sum_probs=81.9
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeE
Q 025858 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQ 87 (247)
Q Consensus 10 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~ 87 (247)
....+..+.++|||+|||.++|+++|+++|++||.|.+++++.++.++.++|||||+|.+.++|++|++ ++..++|+.
T Consensus 17 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 96 (115)
T 2cpz_A 17 GSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKR 96 (115)
T ss_dssp SCCCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred ccCcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 345555677999999999999999999999999999999999999899999999999999999999997 788999999
Q ss_pred EEEeeecCCCCC
Q 025858 88 VEIKRTIPKGSG 99 (247)
Q Consensus 88 i~v~~~~~~~~~ 99 (247)
|+|.++.++...
T Consensus 97 l~V~~a~~~~~~ 108 (115)
T 2cpz_A 97 LKVQLKRSKNDS 108 (115)
T ss_dssp CEEECCCCSCCC
T ss_pred EEEEEcCCCCcC
Confidence 999999876553
No 41
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=4.3e-20 Score=130.47 Aligned_cols=88 Identities=39% Similarity=0.690 Sum_probs=82.3
Q ss_pred CCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEe
Q 025858 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLI 181 (247)
Q Consensus 102 ~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 181 (247)
...+.++|||+|||..+++++|+++|++||.|..|.+++++.++.++|||||+|.+.++|.+|++ ||+..+.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999 89999999999999
Q ss_pred ecccCcccc
Q 025858 182 GWSPVNQLL 190 (247)
Q Consensus 182 ~a~~~~~~~ 190 (247)
++.++....
T Consensus 85 ~a~~~~~~~ 93 (99)
T 2dgs_A 85 RAEPRDSKS 93 (99)
T ss_dssp ECCCCCCCC
T ss_pred ECCCCcccC
Confidence 998876654
No 42
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.8e-20 Score=131.85 Aligned_cols=87 Identities=17% Similarity=0.321 Sum_probs=81.7
Q ss_pred CCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEe
Q 025858 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLI 181 (247)
Q Consensus 102 ~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 181 (247)
...+.++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..|||..+.|+.|+|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCcc
Q 025858 182 GWSPVNQ 188 (247)
Q Consensus 182 ~a~~~~~ 188 (247)
++.++..
T Consensus 99 ~a~~~~~ 105 (106)
T 1p27_B 99 WCFVRGP 105 (106)
T ss_dssp ESEESSC
T ss_pred eecCCCC
Confidence 9987653
No 43
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.83 E-value=7.8e-21 Score=132.04 Aligned_cols=82 Identities=15% Similarity=0.323 Sum_probs=72.9
Q ss_pred ccEEEcCCCCCCCHHHHHHHHHhcC--CeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeecc
Q 025858 107 KKIFVGGIPSSVSEDELKNFFSKYG--KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWS 184 (247)
Q Consensus 107 ~~l~v~~l~~~~t~~~l~~~f~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 184 (247)
.+|||+|||.++++++|+++|++|| .|.+++++.++.+|.++|||||+|.+.++|.+|++.|||..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999988
Q ss_pred cCcc
Q 025858 185 PVNQ 188 (247)
Q Consensus 185 ~~~~ 188 (247)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7544
No 44
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.83 E-value=4.3e-20 Score=134.11 Aligned_cols=90 Identities=19% Similarity=0.343 Sum_probs=83.4
Q ss_pred CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
....+.++|||+|||.++++++|+++|++||.|.+|++++++.++.++|||||+|.+.++|.+|+..||+..+.|+.|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 33456789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred eecccCcccc
Q 025858 181 IGWSPVNQLL 190 (247)
Q Consensus 181 ~~a~~~~~~~ 190 (247)
.++.++....
T Consensus 100 ~~a~~~~~~~ 109 (115)
T 2cpz_A 100 QLKRSKNDSK 109 (115)
T ss_dssp ECCCCSCCCC
T ss_pred EEcCCCCcCC
Confidence 9998876544
No 45
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.82 E-value=6.4e-20 Score=132.17 Aligned_cols=81 Identities=11% Similarity=0.207 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEee
Q 025858 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKR 92 (247)
Q Consensus 15 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~ 92 (247)
+.+.++|||+|||.++||++|+++|++||.|.+++++.|+.++.++|||||+|.+.++|++|++ ++..++|+.|+|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3567899999999999999999999999999999999999999999999999999999999998 88899999999999
Q ss_pred ecC
Q 025858 93 TIP 95 (247)
Q Consensus 93 ~~~ 95 (247)
+..
T Consensus 83 a~~ 85 (110)
T 3s8s_A 83 DIK 85 (110)
T ss_dssp CST
T ss_pred CCC
Confidence 854
No 46
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=9.8e-20 Score=128.63 Aligned_cols=89 Identities=38% Similarity=0.719 Sum_probs=81.9
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEE
Q 025858 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVE 89 (247)
Q Consensus 11 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~ 89 (247)
...+..+.++|||+|||.++|+++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|++ +++.++|+.|.
T Consensus 3 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~ 82 (99)
T 2dgs_A 3 SGSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVE 82 (99)
T ss_dssp CCCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEE
Confidence 34555678999999999999999999999999999999999999899999999999999999999999 88899999999
Q ss_pred EeeecCCCCC
Q 025858 90 IKRTIPKGSG 99 (247)
Q Consensus 90 v~~~~~~~~~ 99 (247)
|.++.++...
T Consensus 83 V~~a~~~~~~ 92 (99)
T 2dgs_A 83 VKRAEPRDSK 92 (99)
T ss_dssp EEECCCCCCC
T ss_pred EEECCCCccc
Confidence 9999876554
No 47
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.82 E-value=2.8e-20 Score=127.62 Aligned_cols=82 Identities=26% Similarity=0.428 Sum_probs=78.0
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEee
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIG 182 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 182 (247)
..+.++|||+|||.++++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred cc
Q 025858 183 WS 184 (247)
Q Consensus 183 a~ 184 (247)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 48
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=6.8e-21 Score=133.51 Aligned_cols=82 Identities=21% Similarity=0.335 Sum_probs=76.0
Q ss_pred CccccEEEcCCCCCCCHHHHHHHHHhcCC--eEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCc----ccCCcE
Q 025858 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGK--VLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMI----DMAGTQ 177 (247)
Q Consensus 104 ~~~~~l~v~~l~~~~t~~~l~~~f~~~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~----~~~g~~ 177 (247)
..-.+|||+|||+++|+++|+++|++||. +.+|++++|+.+|.++|||||+|.+.++|.+|++.|||. .+.|++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34678999999999999999999999995 679999999999999999999999999999999999997 489999
Q ss_pred EEEeeccc
Q 025858 178 VSLIGWSP 185 (247)
Q Consensus 178 l~v~~a~~ 185 (247)
|.|.+|+.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999864
No 49
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.82 E-value=7.8e-20 Score=126.02 Aligned_cols=81 Identities=36% Similarity=0.741 Sum_probs=75.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEEe
Q 025858 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIK 91 (247)
Q Consensus 13 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v~ 91 (247)
.+..+.++|||+|||.++|+++|+++|++||.|.+++++.++.++.++|||||+|.+.++|.+|++ +++.++|+.|.|+
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPK 85 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEE
Confidence 455678999999999999999999999999999999999999899999999999999999999999 6778999999998
Q ss_pred ee
Q 025858 92 RT 93 (247)
Q Consensus 92 ~~ 93 (247)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 50
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.82 E-value=1.9e-19 Score=130.70 Aligned_cols=92 Identities=22% Similarity=0.478 Sum_probs=83.6
Q ss_pred CCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCC
Q 025858 8 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIING 85 (247)
Q Consensus 8 ~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g 85 (247)
+.....+..+.++|||+|||.++|+++|+++|++||.|.+++++.++.++.++|||||+|.+.++|++|++ ++..++|
T Consensus 5 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (115)
T 2dgo_A 5 SSGQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 84 (115)
T ss_dssp CCSSCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT
T ss_pred CCcCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34445666788999999999999999999999999999999999998899999999999999999999998 7889999
Q ss_pred eEEEEeeecCCCCC
Q 025858 86 KQVEIKRTIPKGSG 99 (247)
Q Consensus 86 ~~i~v~~~~~~~~~ 99 (247)
+.|+|.++.+....
T Consensus 85 ~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 85 RQIRTNWATRKPPA 98 (115)
T ss_dssp EECEEEESSCCCCC
T ss_pred EEEEEEEccCCCCC
Confidence 99999999876554
No 51
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.82 E-value=5.3e-21 Score=135.57 Aligned_cols=85 Identities=25% Similarity=0.311 Sum_probs=80.3
Q ss_pred CccccEEEcCCCC------CCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCC-c
Q 025858 104 FKTKKIFVGGIPS------SVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAG-T 176 (247)
Q Consensus 104 ~~~~~l~v~~l~~------~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g-~ 176 (247)
...++|||+|||. ++++++|+++|++||.|.++++++++.||+++|||||+|.+.++|.+|+..|||..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3467999999999 99999999999999999999999999999999999999999999999999999999999 9
Q ss_pred EEEEeecccCcc
Q 025858 177 QVSLIGWSPVNQ 188 (247)
Q Consensus 177 ~l~v~~a~~~~~ 188 (247)
.|+|.++.++..
T Consensus 84 ~l~V~~a~~~~~ 95 (100)
T 3ns6_A 84 RLFLYTMKDVER 95 (100)
T ss_dssp BCEEEESHHHHH
T ss_pred EEEEEECchhhh
Confidence 999999987554
No 52
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.82 E-value=4.2e-20 Score=129.85 Aligned_cols=85 Identities=20% Similarity=0.326 Sum_probs=80.7
Q ss_pred cccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeeccc
Q 025858 106 TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWSP 185 (247)
Q Consensus 106 ~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 185 (247)
+++|||+|||..+++++|+++|++||.|.+++++.++.+|.++|||||+|.+.++|.+|++.|||..+.|+.|+|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57999999999999999999999999999999999988999999999999999999999999999999999999999988
Q ss_pred Ccccc
Q 025858 186 VNQLL 190 (247)
Q Consensus 186 ~~~~~ 190 (247)
+....
T Consensus 82 ~~~~~ 86 (96)
T 2x1f_A 82 SDISG 86 (96)
T ss_dssp SSGGG
T ss_pred CCCCC
Confidence 76543
No 53
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=5.3e-20 Score=128.95 Aligned_cols=87 Identities=24% Similarity=0.452 Sum_probs=81.7
Q ss_pred CccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeec
Q 025858 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGW 183 (247)
Q Consensus 104 ~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 183 (247)
.+.++|||+|||..+++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|.+|+..||+..+.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 35789999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred ccCcccc
Q 025858 184 SPVNQLL 190 (247)
Q Consensus 184 ~~~~~~~ 190 (247)
.++....
T Consensus 83 ~~~~~~~ 89 (95)
T 2dnz_A 83 TERLDGG 89 (95)
T ss_dssp SCCCCCC
T ss_pred ccccCCC
Confidence 8866543
No 54
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.82 E-value=4.6e-20 Score=142.53 Aligned_cols=126 Identities=16% Similarity=0.196 Sum_probs=80.9
Q ss_pred EEecCHHHHHHHHh--ccC--ccCCeEEEEeeecC----------------CCCCCCCCCccccEEEcCCCCCCCHHHHH
Q 025858 65 ITYADPSVVDKVIE--DTH--IINGKQVEIKRTIP----------------KGSGQSKDFKTKKIFVGGIPSSVSEDELK 124 (247)
Q Consensus 65 V~f~~~~~a~~a~~--~~~--~l~g~~i~v~~~~~----------------~~~~~~~~~~~~~l~v~~l~~~~t~~~l~ 124 (247)
.+|.+.++|..|+. +.. .-.|+.....++.. .........+.++|||+|||..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 67888888888876 222 22244444433211 11112233456789999999999999999
Q ss_pred HHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeecccCcccc
Q 025858 125 NFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWSPVNQLL 190 (247)
Q Consensus 125 ~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~~~~~ 190 (247)
++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.++....
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999998766543
No 55
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.82 E-value=7.4e-20 Score=131.46 Aligned_cols=87 Identities=25% Similarity=0.509 Sum_probs=81.8
Q ss_pred CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
......++|||+|||..+++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|.+|++.|||..+.|+.|+|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCc
Q 025858 181 IGWSPVN 187 (247)
Q Consensus 181 ~~a~~~~ 187 (247)
.++.++.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9998764
No 56
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.82 E-value=1.2e-19 Score=129.60 Aligned_cols=88 Identities=18% Similarity=0.270 Sum_probs=81.4
Q ss_pred CCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCC---cEE
Q 025858 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAG---TQV 178 (247)
Q Consensus 102 ~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g---~~l 178 (247)
.....++|||+|||..+++++|+++|++||.|..|.++.++ ++.++|||||+|.+.++|.+|+..||+..+.| +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34567899999999999999999999999999999999997 79999999999999999999999999999998 999
Q ss_pred EEeecccCcccc
Q 025858 179 SLIGWSPVNQLL 190 (247)
Q Consensus 179 ~v~~a~~~~~~~ 190 (247)
+|.++.++....
T Consensus 90 ~V~~a~~~~~~~ 101 (105)
T 2dnh_A 90 VVKFADTDKESG 101 (105)
T ss_dssp EEEESCSSCCCS
T ss_pred EEEECccCcccC
Confidence 999998876654
No 57
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=7.7e-20 Score=130.95 Aligned_cols=90 Identities=23% Similarity=0.373 Sum_probs=83.6
Q ss_pred CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEec-CCCCCceeEEEEEEcCHHHHHHHHHcC-CCcccCCcEE
Q 025858 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRD-HETNRSRGFGFVIFDSEEVVDEMLSKG-NMIDMAGTQV 178 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~ai~~l-~~~~~~g~~l 178 (247)
......++|||+|||..+++++|+++|++||.|..|.++++ +.++.++|||||+|.+.++|.+|+..| |+..+.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 44567889999999999999999999999999999999999 788999999999999999999999999 9999999999
Q ss_pred EEeecccCcccc
Q 025858 179 SLIGWSPVNQLL 190 (247)
Q Consensus 179 ~v~~a~~~~~~~ 190 (247)
+|.++.++....
T Consensus 90 ~v~~a~~~~~~~ 101 (107)
T 2cph_A 90 VLEWADSEVTVQ 101 (107)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEeCCCCCCCC
Confidence 999998876654
No 58
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.6e-19 Score=130.20 Aligned_cols=91 Identities=14% Similarity=0.321 Sum_probs=82.9
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--c------c
Q 025858 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--D------T 80 (247)
Q Consensus 9 ~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~------~ 80 (247)
.+.+.+..+.++|||+|||.++|+++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|++ + +
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~ 85 (111)
T 1x4h_A 6 SGLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGG 85 (111)
T ss_dssp CCCCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCC
T ss_pred CCCCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCC
Confidence 3445666788999999999999999999999999999999999999899999999999999999999998 5 7
Q ss_pred CccCCeEEEEeeecCCCCC
Q 025858 81 HIINGKQVEIKRTIPKGSG 99 (247)
Q Consensus 81 ~~l~g~~i~v~~~~~~~~~ 99 (247)
..++|+.|+|.++.+....
T Consensus 86 ~~~~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 86 LKLDGRQLKVDLAVTRDEA 104 (111)
T ss_dssp EESSSCEEEEECCCCCCCC
T ss_pred cEEcCEEEEEEECCCCccC
Confidence 8999999999999876553
No 59
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=9.8e-20 Score=131.28 Aligned_cols=90 Identities=16% Similarity=0.301 Sum_probs=83.5
Q ss_pred CCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCC------CcccCC
Q 025858 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN------MIDMAG 175 (247)
Q Consensus 102 ~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~------~~~~~g 175 (247)
...+.++|||+|||..+++++|+++|++||.|..|.+++++.++.++|||||+|.+.++|.+|+..|| +..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred cEEEEeecccCccccc
Q 025858 176 TQVSLIGWSPVNQLLK 191 (247)
Q Consensus 176 ~~l~v~~a~~~~~~~~ 191 (247)
+.|+|.++.++.....
T Consensus 91 ~~l~v~~a~~~~~~~~ 106 (111)
T 1x4h_A 91 RQLKVDLAVTRDEAAS 106 (111)
T ss_dssp CEEEEECCCCCCCCCC
T ss_pred EEEEEEECCCCccCCC
Confidence 9999999988765543
No 60
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.1e-20 Score=129.76 Aligned_cols=88 Identities=23% Similarity=0.372 Sum_probs=82.2
Q ss_pred CccccEEEcCCCCCCCHHHHHHHHHhcCCeEEE-EEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEee
Q 025858 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH-QIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIG 182 (247)
Q Consensus 104 ~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v-~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 182 (247)
.+.++|||+|||..+++++|+++|++||.|..+ ++++++.++.++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 357899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred cccCccccc
Q 025858 183 WSPVNQLLK 191 (247)
Q Consensus 183 a~~~~~~~~ 191 (247)
+.++.....
T Consensus 83 a~~~~~~~~ 91 (96)
T 1x5t_A 83 AFKKDSKGS 91 (96)
T ss_dssp SCCCCCCCC
T ss_pred ecccCCCCC
Confidence 988765543
No 61
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=9e-20 Score=127.52 Aligned_cols=84 Identities=24% Similarity=0.431 Sum_probs=79.1
Q ss_pred CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
....+.++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++.||+..+.|+.|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34456789999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred eecc
Q 025858 181 IGWS 184 (247)
Q Consensus 181 ~~a~ 184 (247)
.+|+
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9874
No 62
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.4e-19 Score=126.71 Aligned_cols=88 Identities=20% Similarity=0.357 Sum_probs=80.4
Q ss_pred CCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCC
Q 025858 8 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIING 85 (247)
Q Consensus 8 ~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g 85 (247)
......+..+.++|||+|||.++|+++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|++ ++..++|
T Consensus 5 ~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 84 (95)
T 2cqc_A 5 SSGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG 84 (95)
T ss_dssp CCCCCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34455666788999999999999999999999999999999999999889999999999999999999998 7889999
Q ss_pred eEEEEeeecC
Q 025858 86 KQVEIKRTIP 95 (247)
Q Consensus 86 ~~i~v~~~~~ 95 (247)
+.|+|.++..
T Consensus 85 ~~l~v~~a~~ 94 (95)
T 2cqc_A 85 RRIRVSGPSS 94 (95)
T ss_dssp EEEEEECCSC
T ss_pred EEEEEEecCC
Confidence 9999998753
No 63
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=129.41 Aligned_cols=89 Identities=19% Similarity=0.371 Sum_probs=82.2
Q ss_pred CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
....+.++|||+|||..+++++|+++|++||.|..|.++.+ ++.++|||||+|.+.++|.+|+..||+..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 44557889999999999999999999999999999999998 7899999999999999999999999999999999999
Q ss_pred eecccCccccc
Q 025858 181 IGWSPVNQLLK 191 (247)
Q Consensus 181 ~~a~~~~~~~~ 191 (247)
.++.++.....
T Consensus 88 ~~a~~~~~~~~ 98 (103)
T 2d9p_A 88 ALAQRKEERQS 98 (103)
T ss_dssp EECSSCCCCCC
T ss_pred EEecccccCCC
Confidence 99988766543
No 64
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.1e-19 Score=130.70 Aligned_cols=95 Identities=34% Similarity=0.622 Sum_probs=83.9
Q ss_pred CCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--cc
Q 025858 3 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DT 80 (247)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~ 80 (247)
+..........++...++|||+|||.++|+++|+++|++||.|.++++++++.++.++|||||+|.+.++|++|++ ++
T Consensus 2 s~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~ 81 (116)
T 2cqd_A 2 SSGSSGMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP 81 (116)
T ss_dssp CCCCCCCCCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC
T ss_pred CCCCCCCCCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC
Confidence 3444445556677789999999999999999999999999999999999999899999999999999999999999 44
Q ss_pred CccCCeEEEEeeecCCCC
Q 025858 81 HIINGKQVEIKRTIPKGS 98 (247)
Q Consensus 81 ~~l~g~~i~v~~~~~~~~ 98 (247)
.++|+.|+|.++.+...
T Consensus 82 -~~~g~~l~V~~a~~~~~ 98 (116)
T 2cqd_A 82 -IIDGRKANVNLAYLGAK 98 (116)
T ss_dssp -EETTEECEEEESTTTCC
T ss_pred -cCCCEEEEEEEcccCCC
Confidence 89999999999976433
No 65
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=4.4e-20 Score=131.38 Aligned_cols=89 Identities=21% Similarity=0.269 Sum_probs=82.7
Q ss_pred CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
....+.++|||+|||.++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|+..||+..+.|+.|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCccc
Q 025858 181 IGWSPVNQL 189 (247)
Q Consensus 181 ~~a~~~~~~ 189 (247)
.++.+....
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dnm_A 88 QVARYGRRD 96 (103)
T ss_dssp EECSSCCSC
T ss_pred EECCcCCCC
Confidence 999876544
No 66
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=6.3e-20 Score=133.32 Aligned_cols=83 Identities=24% Similarity=0.479 Sum_probs=75.9
Q ss_pred cccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeeccc
Q 025858 106 TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWSP 185 (247)
Q Consensus 106 ~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 185 (247)
..+|||+|||+++|+++|+++|++||.|.+|+|+++. +.++|||||+|.+.++|.+|++.||+..+.|+.|+|.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5689999999999999999999999999999999985 45899999999999999999999999999999999999987
Q ss_pred Ccccc
Q 025858 186 VNQLL 190 (247)
Q Consensus 186 ~~~~~ 190 (247)
+....
T Consensus 83 ~~~~~ 87 (115)
T 4f25_A 83 RKERE 87 (115)
T ss_dssp CCC--
T ss_pred ccccc
Confidence 65543
No 67
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.9e-19 Score=128.07 Aligned_cols=88 Identities=20% Similarity=0.369 Sum_probs=81.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEE
Q 025858 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVE 89 (247)
Q Consensus 12 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~ 89 (247)
..+..+.++|||+|||.++|+++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|++ ++..++|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 4456678999999999999999999999999999999999998899999999999999999999998 78899999999
Q ss_pred EeeecCCCCC
Q 025858 90 IKRTIPKGSG 99 (247)
Q Consensus 90 v~~~~~~~~~ 99 (247)
|.++.+....
T Consensus 89 v~~a~~~~~~ 98 (103)
T 2cq0_A 89 VEWAKPSTNS 98 (103)
T ss_dssp EEESSCCCCS
T ss_pred EEECCCCCCC
Confidence 9999876543
No 68
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=4.4e-20 Score=129.37 Aligned_cols=82 Identities=17% Similarity=0.357 Sum_probs=74.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCC--eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccC----ccCC
Q 025858 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGD--ITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTH----IING 85 (247)
Q Consensus 14 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~--i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~----~l~g 85 (247)
....-.||||+|||+++|+++|+++|++||. +.+|++++|+.++.++|||||+|.+.++|.+|++ ++. .++|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 3456679999999999999999999999994 6799999999999999999999999999999998 443 5899
Q ss_pred eEEEEeeecC
Q 025858 86 KQVEIKRTIP 95 (247)
Q Consensus 86 ~~i~v~~~~~ 95 (247)
++|.|.++..
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999864
No 69
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=9.3e-20 Score=128.47 Aligned_cols=87 Identities=22% Similarity=0.303 Sum_probs=80.4
Q ss_pred CccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC---CCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHE---TNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 104 ~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
.+.++|||+|||.++++++|+++|++||.|..|.++.++. ++.++|||||+|.+.++|.+|+..||+..+.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3578999999999999999999999999999999999876 6689999999999999999999999999999999999
Q ss_pred eecccCcccc
Q 025858 181 IGWSPVNQLL 190 (247)
Q Consensus 181 ~~a~~~~~~~ 190 (247)
.++.++....
T Consensus 83 ~~a~~~~~~~ 92 (98)
T 2cpf_A 83 RISERATKPA 92 (98)
T ss_dssp ECSSCSSCCC
T ss_pred EEccCCCCCC
Confidence 9998766543
No 70
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=128.40 Aligned_cols=84 Identities=18% Similarity=0.305 Sum_probs=79.0
Q ss_pred CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcc
Q 025858 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLE--------HQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMID 172 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~ 172 (247)
......++|||+|||.++++++|+++|++||.|.. ++++.++.+|.++|||||+|.+.++|.+|++.|||..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34456789999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred cCCcEEEEeecc
Q 025858 173 MAGTQVSLIGWS 184 (247)
Q Consensus 173 ~~g~~l~v~~a~ 184 (247)
+.|+.|+|.+|.
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999873
No 71
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.3e-20 Score=129.97 Aligned_cols=88 Identities=32% Similarity=0.527 Sum_probs=82.4
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEee
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIG 182 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 182 (247)
..+.++|||+|||.++++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|.+|++.||+..+.|+.|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccCcccc
Q 025858 183 WSPVNQLL 190 (247)
Q Consensus 183 a~~~~~~~ 190 (247)
+.++....
T Consensus 89 a~~~~~~~ 96 (102)
T 1x5s_A 89 AGKSSDNR 96 (102)
T ss_dssp EECCCCCC
T ss_pred CCCCCCCC
Confidence 98866543
No 72
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=129.45 Aligned_cols=91 Identities=37% Similarity=0.741 Sum_probs=82.9
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeE
Q 025858 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQ 87 (247)
Q Consensus 9 ~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~ 87 (247)
.....+..+.++|||+|||.++|+++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|++ ++..++|+.
T Consensus 7 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 86 (105)
T 2dh8_A 7 GMNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRN 86 (105)
T ss_dssp CCCCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEE
T ss_pred CCCcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEE
Confidence 3445566788999999999999999999999999999999999998899999999999999999999999 788999999
Q ss_pred EEEeeecCCCCC
Q 025858 88 VEIKRTIPKGSG 99 (247)
Q Consensus 88 i~v~~~~~~~~~ 99 (247)
|.|.++.++...
T Consensus 87 l~V~~a~~~~~~ 98 (105)
T 2dh8_A 87 IDPKPCTPRGMQ 98 (105)
T ss_dssp EBCCCSCCSSCC
T ss_pred EEEEEccCCCCC
Confidence 999999876543
No 73
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=128.96 Aligned_cols=90 Identities=21% Similarity=0.444 Sum_probs=82.4
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCe
Q 025858 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGK 86 (247)
Q Consensus 9 ~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~ 86 (247)
.....+..+.++|||+|||.++|+++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|++ ++..++|+
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (105)
T 1x5u_A 6 SGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGK 85 (105)
T ss_dssp SCCCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSC
T ss_pred CCCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 3445566788999999999999999999999999999999999999899999999999999999999998 77899999
Q ss_pred EEEEeeecCCCC
Q 025858 87 QVEIKRTIPKGS 98 (247)
Q Consensus 87 ~i~v~~~~~~~~ 98 (247)
.|+|.++.+...
T Consensus 86 ~l~v~~a~~~~~ 97 (105)
T 1x5u_A 86 PIRVNKASAHNK 97 (105)
T ss_dssp BCEEEETTTTSC
T ss_pred EEEEEECCCCCc
Confidence 999999977654
No 74
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.5e-20 Score=130.60 Aligned_cols=88 Identities=25% Similarity=0.409 Sum_probs=82.5
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEee
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIG 182 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 182 (247)
..+.++|||+|||..+++++|+++|++||.|..|.+++++.++.++|||||+|.+.++|.+|++.||+..+.|+.|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 44678999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cccCcccc
Q 025858 183 WSPVNQLL 190 (247)
Q Consensus 183 a~~~~~~~ 190 (247)
+.++....
T Consensus 89 a~~~~~~~ 96 (102)
T 2cqb_A 89 AKPMRIKE 96 (102)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 98876544
No 75
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=124.74 Aligned_cols=81 Identities=26% Similarity=0.541 Sum_probs=74.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeee
Q 025858 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRT 93 (247)
Q Consensus 16 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~ 93 (247)
.+.++|||+|||.++|+++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|++ ++..++|+.|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 467899999999999999999999999999999999998899999999999999999999998 788999999999998
Q ss_pred cCC
Q 025858 94 IPK 96 (247)
Q Consensus 94 ~~~ 96 (247)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 76
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.81 E-value=8.6e-20 Score=131.42 Aligned_cols=88 Identities=18% Similarity=0.282 Sum_probs=82.2
Q ss_pred CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
....+.++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34456789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred eecccCcc
Q 025858 181 IGWSPVNQ 188 (247)
Q Consensus 181 ~~a~~~~~ 188 (247)
.++.++..
T Consensus 101 ~~a~~~~~ 108 (110)
T 1oo0_B 101 DWCFVKGP 108 (110)
T ss_dssp EESEESSC
T ss_pred EEcccCCC
Confidence 99987654
No 77
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.81 E-value=7.8e-20 Score=130.73 Aligned_cols=89 Identities=22% Similarity=0.383 Sum_probs=82.6
Q ss_pred CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCccc---CCcE
Q 025858 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDM---AGTQ 177 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~---~g~~ 177 (247)
....+.++|||+|||..+++++|+++|++||.|.+|+++.++.++.++|||||+|.+.++|.+|+..||+..+ .|+.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3455678999999999999999999999999999999999999999999999999999999999999999987 8999
Q ss_pred EEEeecccCccc
Q 025858 178 VSLIGWSPVNQL 189 (247)
Q Consensus 178 l~v~~a~~~~~~ 189 (247)
|+|.++.++...
T Consensus 88 l~v~~a~~~~~~ 99 (106)
T 2dgp_A 88 IQVKPADSESRG 99 (106)
T ss_dssp CEEEECCCCSCC
T ss_pred EEEEECCccccc
Confidence 999999886654
No 78
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=2.5e-19 Score=127.45 Aligned_cols=87 Identities=17% Similarity=0.290 Sum_probs=80.6
Q ss_pred CCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEe
Q 025858 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLI 181 (247)
Q Consensus 102 ~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 181 (247)
...+.++|||+|||.++++++|+++|++|| |..|.+++++.++.++|||||+|.+.++|.+|+ .||+..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 345678999999999999999999999997 999999999999999999999999999999999 799999999999999
Q ss_pred ecccCcccc
Q 025858 182 GWSPVNQLL 190 (247)
Q Consensus 182 ~a~~~~~~~ 190 (247)
++.++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2dng_A 89 IAEGRKQDK 97 (103)
T ss_dssp ECCCCCCCC
T ss_pred EecCCCCCC
Confidence 998866543
No 79
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.81 E-value=2.6e-19 Score=134.27 Aligned_cols=90 Identities=26% Similarity=0.427 Sum_probs=83.5
Q ss_pred CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
......++|||+|||.++++++|+++|++||.|++|++++++.++.++|||||+|.+.++|.+|+..||+..+.|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCcccc
Q 025858 181 IGWSPVNQLL 190 (247)
Q Consensus 181 ~~a~~~~~~~ 190 (247)
.++.++....
T Consensus 117 ~~a~~~~~~~ 126 (139)
T 1u6f_A 117 ALAASGHQRP 126 (139)
T ss_dssp EESSCCCCCC
T ss_pred EECCCCCCCC
Confidence 9998866543
No 80
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=4.9e-19 Score=125.97 Aligned_cols=88 Identities=14% Similarity=0.352 Sum_probs=80.1
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEE
Q 025858 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVE 89 (247)
Q Consensus 11 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~ 89 (247)
......+.++|||+|||.++|+++|+++|++|| |.++.++.++.++.++|||||+|.+.++|.+|+. ++..++|+.|+
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~ 86 (103)
T 2dng_A 8 KELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLR 86 (103)
T ss_dssp CCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECE
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEE
Confidence 444556789999999999999999999999997 9999999999899999999999999999999998 78899999999
Q ss_pred EeeecCCCCC
Q 025858 90 IKRTIPKGSG 99 (247)
Q Consensus 90 v~~~~~~~~~ 99 (247)
|.++.+....
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dng_A 87 VDIAEGRKQD 96 (103)
T ss_dssp EEECCCCCCC
T ss_pred EEEecCCCCC
Confidence 9999876553
No 81
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=128.03 Aligned_cols=85 Identities=20% Similarity=0.283 Sum_probs=80.2
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcE----
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVL-EHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQ---- 177 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~---- 177 (247)
....++|||+|||..+++++|+++|++||.|. ++++++++.++.++|||||+|.+.++|++|+..|||..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34678999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEEeecccCc
Q 025858 178 VSLIGWSPVN 187 (247)
Q Consensus 178 l~v~~a~~~~ 187 (247)
|+|.++.+..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999997654
No 82
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-19 Score=129.69 Aligned_cols=90 Identities=20% Similarity=0.439 Sum_probs=80.9
Q ss_pred CCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCC
Q 025858 8 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIING 85 (247)
Q Consensus 8 ~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g 85 (247)
..+.+....+.++|||+|||.++|+++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|++ ++..++|
T Consensus 13 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 92 (106)
T 1p27_B 13 DEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG 92 (106)
T ss_dssp --CCBCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC
Confidence 34445556677899999999999999999999999999999999999899999999999999999999998 7889999
Q ss_pred eEEEEeeecCCC
Q 025858 86 KQVEIKRTIPKG 97 (247)
Q Consensus 86 ~~i~v~~~~~~~ 97 (247)
+.|.|.++.++.
T Consensus 93 ~~l~V~~a~~~~ 104 (106)
T 1p27_B 93 QPISVDWCFVRG 104 (106)
T ss_dssp SBCEEEESEESS
T ss_pred cEEEEEeecCCC
Confidence 999999987654
No 83
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.2e-19 Score=126.78 Aligned_cols=86 Identities=22% Similarity=0.468 Sum_probs=79.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEe
Q 025858 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIK 91 (247)
Q Consensus 14 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~ 91 (247)
+..+.++|||+|||.++|+++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|++ ++..++|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45678999999999999999999999999999999999999899999999999999999999996 7889999999999
Q ss_pred eecCCCCC
Q 025858 92 RTIPKGSG 99 (247)
Q Consensus 92 ~~~~~~~~ 99 (247)
++.+....
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 99877654
No 84
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=129.38 Aligned_cols=82 Identities=23% Similarity=0.410 Sum_probs=76.9
Q ss_pred CCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEe
Q 025858 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLI 181 (247)
Q Consensus 102 ~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 181 (247)
.....++|||+|||.++|+++|+++|++||.|.+|.+++++. |.++|||||+|.+.++|.+|+. +++..+.|+.|.|.
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 345678999999999999999999999999999999999977 9999999999999999999999 89999999999999
Q ss_pred eccc
Q 025858 182 GWSP 185 (247)
Q Consensus 182 ~a~~ 185 (247)
++..
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 8765
No 85
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.81 E-value=1.2e-19 Score=125.53 Aligned_cols=81 Identities=23% Similarity=0.403 Sum_probs=77.6
Q ss_pred ccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeecc
Q 025858 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWS 184 (247)
Q Consensus 105 ~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 184 (247)
+.++|||+|||.++++++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|+ .||+..+.|+.|+|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4689999999999999999999999999999999999889999999999999999999999 899999999999999987
Q ss_pred cC
Q 025858 185 PV 186 (247)
Q Consensus 185 ~~ 186 (247)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 86
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=128.53 Aligned_cols=89 Identities=26% Similarity=0.362 Sum_probs=82.3
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcc-cCCcEEEE
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSK-YGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMID-MAGTQVSL 180 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~-~~g~~l~v 180 (247)
..+.++|||+|||.++++++|+++|++ ||.|.++.+++++ ++.++|||||+|.+.++|.+|+..||+.. +.|+.|+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 446789999999999999999999999 9999999999998 89999999999999999999999999999 99999999
Q ss_pred eecccCcccccc
Q 025858 181 IGWSPVNQLLKG 192 (247)
Q Consensus 181 ~~a~~~~~~~~~ 192 (247)
.++.++......
T Consensus 85 ~~a~~~~~~~~~ 96 (104)
T 2dhg_A 85 SVAIPKASRVKP 96 (104)
T ss_dssp CBCCCCCSCCCC
T ss_pred EEccCCCcCCCC
Confidence 999877665443
No 87
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.9e-19 Score=127.76 Aligned_cols=87 Identities=23% Similarity=0.423 Sum_probs=80.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEE
Q 025858 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEI 90 (247)
Q Consensus 13 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v 90 (247)
....+.++|||+|||.++|+++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|++ ++..++|+.|+|
T Consensus 7 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 7 GMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp CSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 445678999999999999999999999999999999999998899999999999999999999997 788999999999
Q ss_pred eeecCCCCC
Q 025858 91 KRTIPKGSG 99 (247)
Q Consensus 91 ~~~~~~~~~ 99 (247)
.++.+....
T Consensus 87 ~~a~~~~~~ 95 (102)
T 2cqb_A 87 NLAKPMRIK 95 (102)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 999876554
No 88
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8.2e-20 Score=130.14 Aligned_cols=87 Identities=25% Similarity=0.504 Sum_probs=81.8
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEee
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIG 182 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 182 (247)
+...++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccCccc
Q 025858 183 WSPVNQL 189 (247)
Q Consensus 183 a~~~~~~ 189 (247)
+.++...
T Consensus 85 a~~~~~~ 91 (104)
T 1p1t_A 85 AASEKNK 91 (104)
T ss_dssp TTCTTHH
T ss_pred CCCccch
Confidence 9876554
No 89
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.81 E-value=2.8e-19 Score=122.01 Aligned_cols=80 Identities=20% Similarity=0.430 Sum_probs=75.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeeecC
Q 025858 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIP 95 (247)
Q Consensus 18 ~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~~~ 95 (247)
+.+|||+|||.++|+++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|++ ++..++|+.|+|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 4689999999999999999999999999999999998899999999999999999999998 78899999999999876
Q ss_pred CC
Q 025858 96 KG 97 (247)
Q Consensus 96 ~~ 97 (247)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 90
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.9e-19 Score=128.03 Aligned_cols=89 Identities=20% Similarity=0.334 Sum_probs=81.4
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEE
Q 025858 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQV 88 (247)
Q Consensus 11 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i 88 (247)
.+.+..+.++|||+|||.++|+++|+++|++||.|.++.++.++.++.++|||||+|.+.++|++|++ ++..++|+.|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 6 SGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp CSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 34456678999999999999999999999999999999999999889999999999999999999998 7889999999
Q ss_pred EEeeecCCCCC
Q 025858 89 EIKRTIPKGSG 99 (247)
Q Consensus 89 ~v~~~~~~~~~ 99 (247)
.|.++.+....
T Consensus 86 ~V~~a~~~~~~ 96 (103)
T 2dnm_A 86 RVQVARYGRRD 96 (103)
T ss_dssp EEEECSSCCSC
T ss_pred EEEECCcCCCC
Confidence 99999876543
No 91
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.8e-19 Score=124.96 Aligned_cols=85 Identities=22% Similarity=0.435 Sum_probs=78.1
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCe
Q 025858 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGK 86 (247)
Q Consensus 9 ~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~ 86 (247)
........+.++|||+|||.++|+++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|++ ++..++|+
T Consensus 7 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 86 (94)
T 2e5h_A 7 GMSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGR 86 (94)
T ss_dssp CCCCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTE
T ss_pred CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 3444555678999999999999999999999999999999999999889999999999999999999997 78899999
Q ss_pred EEEEeee
Q 025858 87 QVEIKRT 93 (247)
Q Consensus 87 ~i~v~~~ 93 (247)
.|+|.++
T Consensus 87 ~l~v~~a 93 (94)
T 2e5h_A 87 VIKASIA 93 (94)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 9999986
No 92
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.5e-19 Score=129.45 Aligned_cols=88 Identities=27% Similarity=0.484 Sum_probs=81.3
Q ss_pred CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
....+.++|||+|||.++++++|+++|++||.|..|++++++.++.++|||||+|.+.++|.+|+..+|+ .+.|+.|+|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 4456788999999999999999999999999999999999999999999999999999999999999998 899999999
Q ss_pred eecccCccc
Q 025858 181 IGWSPVNQL 189 (247)
Q Consensus 181 ~~a~~~~~~ 189 (247)
.++.++...
T Consensus 91 ~~a~~~~~~ 99 (116)
T 2cqd_A 91 NLAYLGAKP 99 (116)
T ss_dssp EESTTTCCC
T ss_pred EEcccCCCc
Confidence 999765443
No 93
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.80 E-value=6e-19 Score=125.86 Aligned_cols=88 Identities=16% Similarity=0.329 Sum_probs=79.3
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCC---
Q 025858 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIING--- 85 (247)
Q Consensus 11 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g--- 85 (247)
......+.++|||+|||.++|+++|+++|++||.|.++.++.++ ++.++|||||+|.+.++|.+|++ ++..+.|
T Consensus 8 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~ 86 (105)
T 2dnh_A 8 SESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGAS 86 (105)
T ss_dssp CCCSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCS
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCC
Confidence 34445678999999999999999999999999999999999998 89999999999999999999998 7778887
Q ss_pred eEEEEeeecCCCCC
Q 025858 86 KQVEIKRTIPKGSG 99 (247)
Q Consensus 86 ~~i~v~~~~~~~~~ 99 (247)
+.|.|.++.+....
T Consensus 87 ~~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 87 SSLVVKFADTDKES 100 (105)
T ss_dssp SCCEEEESCSSCCC
T ss_pred ccEEEEECccCccc
Confidence 99999999876543
No 94
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.80 E-value=1.1e-19 Score=125.39 Aligned_cols=83 Identities=19% Similarity=0.391 Sum_probs=77.8
Q ss_pred ccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCC-ceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeec
Q 025858 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNR-SRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGW 183 (247)
Q Consensus 105 ~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~-~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 183 (247)
..++|||+|||.++++++|+++|++||.|..+.++.+..++. ++|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 467999999999999999999999999999999999987766 8999999999999999999999999999999999999
Q ss_pred ccCc
Q 025858 184 SPVN 187 (247)
Q Consensus 184 ~~~~ 187 (247)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 95
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=128.73 Aligned_cols=90 Identities=32% Similarity=0.582 Sum_probs=83.5
Q ss_pred CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
....+.++|||+|||..+++++|+++|++||.|..|.+++++.++.++|||||+|.+.++|.+|+.. |+..+.|+.|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 4456788999999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred eecccCccccc
Q 025858 181 IGWSPVNQLLK 191 (247)
Q Consensus 181 ~~a~~~~~~~~ 191 (247)
.++.++.....
T Consensus 90 ~~a~~~~~~~~ 100 (105)
T 2dh8_A 90 KPCTPRGMQPS 100 (105)
T ss_dssp CCSCCSSCCTT
T ss_pred EEccCCCCCCC
Confidence 99988766543
No 96
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=130.63 Aligned_cols=86 Identities=26% Similarity=0.412 Sum_probs=80.4
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEee
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIG 182 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 182 (247)
..+.++|||+|||.++++++|+++|++||.|..|.++.+. ++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred cccCccc
Q 025858 183 WSPVNQL 189 (247)
Q Consensus 183 a~~~~~~ 189 (247)
+.++...
T Consensus 83 a~~~~~~ 89 (116)
T 2fy1_A 83 AKKPSFQ 89 (116)
T ss_dssp CCCSSCS
T ss_pred CCCCCCC
Confidence 9876544
No 97
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=7e-19 Score=125.11 Aligned_cols=89 Identities=19% Similarity=0.394 Sum_probs=80.6
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCe
Q 025858 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGK 86 (247)
Q Consensus 9 ~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~ 86 (247)
........+.++|||+|||.++|+++|+++|++||.|.++.++.+ ++.++|||||+|.+.++|.+|++ ++..++|+
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2d9p_A 6 SGDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 83 (103)
T ss_dssp CCCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 334455568899999999999999999999999999999999998 88999999999999999999998 78899999
Q ss_pred EEEEeeecCCCCC
Q 025858 87 QVEIKRTIPKGSG 99 (247)
Q Consensus 87 ~i~v~~~~~~~~~ 99 (247)
.|.|.++.++...
T Consensus 84 ~l~V~~a~~~~~~ 96 (103)
T 2d9p_A 84 PLYVALAQRKEER 96 (103)
T ss_dssp BCEEEECSSCCCC
T ss_pred EEEEEEecccccC
Confidence 9999999876554
No 98
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.80 E-value=3.9e-19 Score=122.48 Aligned_cols=81 Identities=32% Similarity=0.634 Sum_probs=75.7
Q ss_pred CCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEe
Q 025858 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLI 181 (247)
Q Consensus 102 ~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 181 (247)
...+.++|||+|||..+++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|.+|+.. ++..+.|+.|.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEE
Confidence 345678999999999999999999999999999999999999999999999999999999999975 8888999999998
Q ss_pred ec
Q 025858 182 GW 183 (247)
Q Consensus 182 ~a 183 (247)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 99
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.80 E-value=1.6e-19 Score=133.84 Aligned_cols=87 Identities=25% Similarity=0.405 Sum_probs=81.6
Q ss_pred CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
....+.++|||+|||.++++++|+++|++||.|..|++++++.++.++|||||+|.+.++|.+|+..|||..+.|+.|+|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 33456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCc
Q 025858 181 IGWSPVN 187 (247)
Q Consensus 181 ~~a~~~~ 187 (247)
.++.++.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9998764
No 100
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=4.1e-19 Score=125.42 Aligned_cols=85 Identities=22% Similarity=0.418 Sum_probs=78.8
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeE--------EEEeecCCCCCcceEEEEEecCHHHHHHHHh--
Q 025858 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITD--------SVIMKDRYTGQPRGFGFITYADPSVVDKVIE-- 78 (247)
Q Consensus 9 ~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~--------i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-- 78 (247)
.+....+.+.++|||+|||.++|+++|+++|++||.|.+ ++++.++.++.++|||||+|.+.++|.+|++
T Consensus 4 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l 83 (99)
T 2la6_A 4 HHHHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWF 83 (99)
T ss_dssp SCSCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHH
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 445566678899999999999999999999999999999 9999998899999999999999999999997
Q ss_pred ccCccCCeEEEEeee
Q 025858 79 DTHIINGKQVEIKRT 93 (247)
Q Consensus 79 ~~~~l~g~~i~v~~~ 93 (247)
++..++|+.|+|.++
T Consensus 84 ~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 84 DGKEFSGNPIKVSFA 98 (99)
T ss_dssp TTCBSSSSBCEEEEC
T ss_pred CCCEeCCcEEEEEec
Confidence 888999999999986
No 101
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.80 E-value=2.2e-19 Score=129.21 Aligned_cols=90 Identities=34% Similarity=0.668 Sum_probs=75.7
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeE
Q 025858 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQ 87 (247)
Q Consensus 9 ~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~ 87 (247)
.....+..+.++|||+|||.++|+++|+++|+.||.|.+++++.++.+|.++|||||+|.+.++|.+|++ .+..++|+.
T Consensus 16 ~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~ 95 (109)
T 2rs2_A 16 PRGSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKT 95 (109)
T ss_dssp ----------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEE
T ss_pred ccccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEE
Confidence 3455666788999999999999999999999999999999999999889999999999999999999998 557999999
Q ss_pred EEEeeecCCCC
Q 025858 88 VEIKRTIPKGS 98 (247)
Q Consensus 88 i~v~~~~~~~~ 98 (247)
|.|.++.+...
T Consensus 96 l~V~~a~~~~~ 106 (109)
T 2rs2_A 96 IDPKVAFPRRA 106 (109)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEEccCCCC
Confidence 99999987654
No 102
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.9e-19 Score=126.19 Aligned_cols=88 Identities=16% Similarity=0.328 Sum_probs=79.8
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCC-CCcceEEEEEecCHHHHHHHHh-ccCccCCeEE
Q 025858 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYT-GQPRGFGFITYADPSVVDKVIE-DTHIINGKQV 88 (247)
Q Consensus 11 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~-~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i 88 (247)
.+....+.++|||+|||.++|+++|+++|+.|| |.++.++.++.+ +.++|||||+|.+.++|.+|+. ++..++|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l 86 (104)
T 1wi8_A 8 SRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRI 86 (104)
T ss_dssp CCCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEE
Confidence 344456779999999999999999999999999 999999999887 9999999999999999999997 7889999999
Q ss_pred EEeeecCCCCC
Q 025858 89 EIKRTIPKGSG 99 (247)
Q Consensus 89 ~v~~~~~~~~~ 99 (247)
+|.++.++...
T Consensus 87 ~V~~a~~~~~~ 97 (104)
T 1wi8_A 87 RVDVADQAQDK 97 (104)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999876553
No 103
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.2e-19 Score=125.78 Aligned_cols=89 Identities=19% Similarity=0.286 Sum_probs=80.3
Q ss_pred CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
......++|||+|||..+++++|+++|++||.|..|.++++..+ ++|||||+|.+.++|.+|+..||+..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 34556789999999999999999999999999999999998543 6899999999999999999999999999999999
Q ss_pred eecccCccccc
Q 025858 181 IGWSPVNQLLK 191 (247)
Q Consensus 181 ~~a~~~~~~~~ 191 (247)
.++.++.....
T Consensus 88 ~~a~~~~~~~~ 98 (103)
T 2cqi_A 88 NWATTPSSQKS 98 (103)
T ss_dssp EECCCTTCCCC
T ss_pred EECCCCccccc
Confidence 99988665443
No 104
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.4e-19 Score=127.50 Aligned_cols=84 Identities=23% Similarity=0.237 Sum_probs=79.0
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEee
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIG 182 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 182 (247)
....++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++.||+..+.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 44568899999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cccC
Q 025858 183 WSPV 186 (247)
Q Consensus 183 a~~~ 186 (247)
+..+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8754
No 105
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.6e-19 Score=127.64 Aligned_cols=87 Identities=18% Similarity=0.337 Sum_probs=80.6
Q ss_pred CCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHET-NRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 102 ~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~-~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
...+.++|||+|||.++++++|+++|++|| |..|.+++++.+ +.++|||||+|.+.++|.+|+ .||+..+.|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345678999999999999999999999999 999999999887 899999999999999999999 89999999999999
Q ss_pred eecccCcccc
Q 025858 181 IGWSPVNQLL 190 (247)
Q Consensus 181 ~~a~~~~~~~ 190 (247)
.++.++....
T Consensus 89 ~~a~~~~~~~ 98 (104)
T 1wi8_A 89 DVADQAQDKD 98 (104)
T ss_dssp EECCCCCCCC
T ss_pred EEccCCCCCC
Confidence 9998876654
No 106
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.80 E-value=3.8e-20 Score=163.54 Aligned_cols=157 Identities=14% Similarity=0.216 Sum_probs=112.1
Q ss_pred CCCCCCCHHHHHHHhccCCCeeEEEEee----cC-CCCCcceEE--EEEecCHHHHHHHHh--ccCcc------------
Q 025858 25 GLPKDTTYATFNKHFGKYGDITDSVIMK----DR-YTGQPRGFG--FITYADPSVVDKVIE--DTHII------------ 83 (247)
Q Consensus 25 nLp~~~te~~l~~~f~~~G~i~~i~~~~----~~-~~~~~~g~a--fV~f~~~~~a~~a~~--~~~~l------------ 83 (247)
.||++ |..+|..+|+|..+..+. ++ .+....|++ |+.|.+..++..++. +....
T Consensus 4 ~lPp~-----L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~ 78 (437)
T 3pgw_S 4 FLPPN-----LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERR 78 (437)
T ss_pred cCCcc-----HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHH
Confidence 46665 688999999988774332 21 122223334 777876554433322 00000
Q ss_pred ---CCeEEEEeeecCCCCCCCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHH
Q 025858 84 ---NGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEV 160 (247)
Q Consensus 84 ---~g~~i~v~~~~~~~~~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 160 (247)
....+. ...+.........+.++|||+|||..+|+++|.++|++||.|+.|.|+.+..++.++|||||+|.+.++
T Consensus 79 ~~~~~~~~~--~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~ 156 (437)
T 3pgw_S 79 QQEVETELK--MWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERD 156 (437)
T ss_pred HHHHHHhhh--hcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHH
Confidence 000111 111212222233456899999999999999999999999999999999999899999999999999999
Q ss_pred HHHHHHcCCCcccCCcEEEEeecccCcc
Q 025858 161 VDEMLSKGNMIDMAGTQVSLIGWSPVNQ 188 (247)
Q Consensus 161 a~~ai~~l~~~~~~g~~l~v~~a~~~~~ 188 (247)
|.+||..|||..|.|+.|.|.++.++..
T Consensus 157 A~~Ai~~lng~~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 157 MHSAYKHADGKKIDGRRVLVDVERGRTV 184 (437)
T ss_pred HHHHHHHcCCCEECCEEEEEEEeCCCCC
Confidence 9999999999999999999999987544
No 107
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.80 E-value=2.7e-19 Score=128.68 Aligned_cols=87 Identities=29% Similarity=0.518 Sum_probs=77.7
Q ss_pred CCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEe
Q 025858 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLI 181 (247)
Q Consensus 102 ~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 181 (247)
...+.++|||+|||.++++++|+++|++||.|.+|++++++.+|.++|||||+|.+.++|.+|+..+ +..+.|+.|+|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999986 599999999999
Q ss_pred ecccCccc
Q 025858 182 GWSPVNQL 189 (247)
Q Consensus 182 ~a~~~~~~ 189 (247)
++.++...
T Consensus 100 ~a~~~~~~ 107 (109)
T 2rs2_A 100 VAFPRRAQ 107 (109)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99887654
No 108
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.8e-19 Score=130.42 Aligned_cols=90 Identities=22% Similarity=0.313 Sum_probs=83.4
Q ss_pred CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeE--------EEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcc
Q 025858 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVL--------EHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMID 172 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~ 172 (247)
....+.++|||+|||..+++++|+++|++||.|. .|+++.++.++.++|||||+|.+.++|.+|+..||+..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3455788999999999999999999999999999 69999998899999999999999999999999999999
Q ss_pred cCCcEEEEeecccCcccc
Q 025858 173 MAGTQVSLIGWSPVNQLL 190 (247)
Q Consensus 173 ~~g~~l~v~~a~~~~~~~ 190 (247)
+.|+.|+|.++.++....
T Consensus 90 ~~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPMN 107 (113)
T ss_dssp ETTEECEEECSSCCCCST
T ss_pred cCCCEEEEEECCCCCCCC
Confidence 999999999998876654
No 109
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=5.8e-19 Score=126.35 Aligned_cols=91 Identities=16% Similarity=0.359 Sum_probs=82.1
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeec-CCCCCcceEEEEEecCHHHHHHHHh---ccCccC
Q 025858 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKD-RYTGQPRGFGFITYADPSVVDKVIE---DTHIIN 84 (247)
Q Consensus 9 ~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~-~~~~~~~g~afV~f~~~~~a~~a~~---~~~~l~ 84 (247)
.....+....++|||+|||.++|+++|+++|++||.|.++.++.+ +.++.++|||||+|.+.++|.+|++ ++..++
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~ 85 (107)
T 2cph_A 6 SGQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY 85 (107)
T ss_dssp CCSSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS
T ss_pred CcccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC
Confidence 344556678899999999999999999999999999999999999 7789999999999999999999998 477999
Q ss_pred CeEEEEeeecCCCCC
Q 025858 85 GKQVEIKRTIPKGSG 99 (247)
Q Consensus 85 g~~i~v~~~~~~~~~ 99 (247)
|+.|.|.++.+....
T Consensus 86 g~~l~v~~a~~~~~~ 100 (107)
T 2cph_A 86 GRRLVLEWADSEVTV 100 (107)
T ss_dssp SCBCEEEECCCCCCC
T ss_pred CCEEEEEeCCCCCCC
Confidence 999999999876553
No 110
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=5.2e-19 Score=123.85 Aligned_cols=85 Identities=25% Similarity=0.554 Sum_probs=79.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEee
Q 025858 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKR 92 (247)
Q Consensus 15 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~ 92 (247)
+.++++|||+|||.++|+++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|++ ++..++|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 3567899999999999999999999999999999999999889999999999999999999998 78899999999999
Q ss_pred ecCCCCC
Q 025858 93 TIPKGSG 99 (247)
Q Consensus 93 ~~~~~~~ 99 (247)
+.++...
T Consensus 82 a~~~~~~ 88 (95)
T 2dnz_A 82 VTERLDG 88 (95)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9876553
No 111
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.80 E-value=2.4e-19 Score=122.93 Aligned_cols=81 Identities=22% Similarity=0.417 Sum_probs=76.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEe
Q 025858 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIK 91 (247)
Q Consensus 14 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~ 91 (247)
...+.++|||+|||.++|+++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|++ ++..++|+.|+|.
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45678999999999999999999999999999999999998899999999999999999999997 8889999999999
Q ss_pred eec
Q 025858 92 RTI 94 (247)
Q Consensus 92 ~~~ 94 (247)
++.
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 863
No 112
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.80 E-value=2.2e-19 Score=133.03 Aligned_cols=88 Identities=23% Similarity=0.379 Sum_probs=81.3
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeE
Q 025858 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQ 87 (247)
Q Consensus 10 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~ 87 (247)
....++.+.++|||+|||.++|+++|+++|++||.|.++++++++.++.++|||||+|.+.++|++|++ ++..++|+.
T Consensus 38 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~ 117 (129)
T 2kxn_B 38 GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 117 (129)
T ss_dssp CCSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 345566788999999999999999999999999999999999999899999999999999999999998 788999999
Q ss_pred EEEeeecCCC
Q 025858 88 VEIKRTIPKG 97 (247)
Q Consensus 88 i~v~~~~~~~ 97 (247)
|+|.++.++.
T Consensus 118 l~V~~a~~~~ 127 (129)
T 2kxn_B 118 IRVDFSITKR 127 (129)
T ss_dssp CEESCCSSSS
T ss_pred EEEEEecCCC
Confidence 9999987654
No 113
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.80 E-value=2.4e-19 Score=137.10 Aligned_cols=82 Identities=18% Similarity=0.307 Sum_probs=77.6
Q ss_pred ccccEEEcCCCCCCCHHHHHHHHHhcC--CeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEee
Q 025858 105 KTKKIFVGGIPSSVSEDELKNFFSKYG--KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIG 182 (247)
Q Consensus 105 ~~~~l~v~~l~~~~t~~~l~~~f~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 182 (247)
..++|||+|||.++|+++|+++|++|| .|.+|+++.|+.+|.++|||||+|.+.++|.+|+..|||..+.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 467999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 025858 183 WSPV 186 (247)
Q Consensus 183 a~~~ 186 (247)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8764
No 114
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4e-19 Score=126.14 Aligned_cols=87 Identities=31% Similarity=0.650 Sum_probs=80.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEE
Q 025858 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEI 90 (247)
Q Consensus 13 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v 90 (247)
....+.++|||+|||.++|+++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|++ ++..++|+.|+|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 445678999999999999999999999999999999999998889999999999999999999997 788999999999
Q ss_pred eeecCCCCC
Q 025858 91 KRTIPKGSG 99 (247)
Q Consensus 91 ~~~~~~~~~ 99 (247)
.++.+....
T Consensus 87 ~~a~~~~~~ 95 (102)
T 1x5s_A 87 DQAGKSSDN 95 (102)
T ss_dssp EEEECCCCC
T ss_pred EECCCCCCC
Confidence 999876543
No 115
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.80 E-value=2.8e-19 Score=125.26 Aligned_cols=83 Identities=28% Similarity=0.476 Sum_probs=77.7
Q ss_pred CCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEe
Q 025858 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLI 181 (247)
Q Consensus 102 ~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 181 (247)
.....++|||+|||..+++++|+++|++||.|.++.+++++. +.++|||||+|.+.++|.+|+..||+..+.|+.|+|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 345678999999999999999999999999999999999976 8999999999999999999999999999999999999
Q ss_pred eccc
Q 025858 182 GWSP 185 (247)
Q Consensus 182 ~a~~ 185 (247)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9863
No 116
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.2e-19 Score=127.94 Aligned_cols=91 Identities=21% Similarity=0.392 Sum_probs=82.6
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCee--------EEEEeecCCCCCcceEEEEEecCHHHHHHHHh--
Q 025858 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDIT--------DSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-- 78 (247)
Q Consensus 9 ~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~--------~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-- 78 (247)
+....+..+.++|||+|||.++|+++|+++|++||.|. .++++.++.++.++|||||+|.+.++|.+|++
T Consensus 6 p~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 85 (113)
T 2cpe_A 6 SGDPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWF 85 (113)
T ss_dssp CCCCCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHH
T ss_pred CCCcccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHc
Confidence 34456677899999999999999999999999999998 69999998899999999999999999999998
Q ss_pred ccCccCCeEEEEeeecCCCCC
Q 025858 79 DTHIINGKQVEIKRTIPKGSG 99 (247)
Q Consensus 79 ~~~~l~g~~i~v~~~~~~~~~ 99 (247)
++..++|+.|+|.++.+....
T Consensus 86 ~g~~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 86 DGKDFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTCEETTEECEEECSSCCCCS
T ss_pred CCCccCCCEEEEEECCCCCCC
Confidence 888999999999999876553
No 117
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.80 E-value=2.2e-19 Score=129.32 Aligned_cols=91 Identities=19% Similarity=0.359 Sum_probs=81.7
Q ss_pred CCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCC
Q 025858 8 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIING 85 (247)
Q Consensus 8 ~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g 85 (247)
..+.+....+.++|||+|||.++|+++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|++ ++..++|
T Consensus 16 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 95 (110)
T 1oo0_B 16 LEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG 95 (110)
T ss_dssp --CCBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34555566778999999999999999999999999999999999998899999999999999999999998 7889999
Q ss_pred eEEEEeeecCCCC
Q 025858 86 KQVEIKRTIPKGS 98 (247)
Q Consensus 86 ~~i~v~~~~~~~~ 98 (247)
+.|.|.++.+...
T Consensus 96 ~~l~V~~a~~~~~ 108 (110)
T 1oo0_B 96 QTIQVDWCFVKGP 108 (110)
T ss_dssp EECEEEESEESSC
T ss_pred cEEEEEEcccCCC
Confidence 9999999876543
No 118
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.80 E-value=1.8e-19 Score=131.37 Aligned_cols=83 Identities=19% Similarity=0.371 Sum_probs=78.0
Q ss_pred CCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEe
Q 025858 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLI 181 (247)
Q Consensus 102 ~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 181 (247)
...+.++|||+|||.++++++|+++|++||.|.++++++++.++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecc
Q 025858 182 GWS 184 (247)
Q Consensus 182 ~a~ 184 (247)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 873
No 119
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.4e-18 Score=123.59 Aligned_cols=89 Identities=29% Similarity=0.397 Sum_probs=81.1
Q ss_pred CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
....+.++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+.. +..+.|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEEE
Confidence 3445678999999999999999999999999999999999999999999999999999999999994 67999999999
Q ss_pred eecccCccccc
Q 025858 181 IGWSPVNQLLK 191 (247)
Q Consensus 181 ~~a~~~~~~~~ 191 (247)
.++.++.....
T Consensus 88 ~~a~~~~~~~~ 98 (103)
T 2cqg_A 88 KLPNSKQSQDS 98 (103)
T ss_dssp ECCCTTCCCCC
T ss_pred EecCCCCcCCC
Confidence 99988766543
No 120
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.79 E-value=8.4e-20 Score=132.54 Aligned_cols=103 Identities=19% Similarity=0.302 Sum_probs=91.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEee
Q 025858 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKR 92 (247)
Q Consensus 15 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~ 92 (247)
+.++++|||+|||.++|+++|+++|+.||.|.++.++.+ +.++|||||+|.+.++|.+|++ ++..++|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999875 4569999999999999999998 78899999999999
Q ss_pred ecCCCCCCCCCCccccEEEcCCCCCCCHHHHHHHHHhcCC
Q 025858 93 TIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGK 132 (247)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~ 132 (247)
+.+.... .+++...++++|.++|++||.
T Consensus 82 a~~~~~~------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 82 YNANRAF------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CCHHHHT------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred ecCChhh------------hhhhHhHhHHHHHHHHHHhCC
Confidence 8754322 567788899999999999985
No 121
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.79 E-value=9.6e-20 Score=126.48 Aligned_cols=80 Identities=19% Similarity=0.330 Sum_probs=70.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCC--CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeeec
Q 025858 19 GKIFIGGLPKDTTYATFNKHFGKYG--DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTI 94 (247)
Q Consensus 19 ~~l~v~nLp~~~te~~l~~~f~~~G--~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~~ 94 (247)
.+|||+|||.++|+++|+++|++|| .|.+++++.++.+|.++|||||+|.+.++|++|++ ++..++|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999899999999999999999999997 8889999999999988
Q ss_pred CCCC
Q 025858 95 PKGS 98 (247)
Q Consensus 95 ~~~~ 98 (247)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7654
No 122
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.79 E-value=5e-19 Score=127.08 Aligned_cols=86 Identities=24% Similarity=0.520 Sum_probs=79.6
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEE
Q 025858 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQV 88 (247)
Q Consensus 11 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i 88 (247)
......+.++|||+|||.++|+++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|++ ++..++|+.|
T Consensus 19 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 19 LQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp SCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred cccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34555678999999999999999999999999999999999998899999999999999999999998 8889999999
Q ss_pred EEeeecCC
Q 025858 89 EIKRTIPK 96 (247)
Q Consensus 89 ~v~~~~~~ 96 (247)
+|.++.++
T Consensus 99 ~V~~a~~k 106 (108)
T 2jrs_A 99 KVGHVTER 106 (108)
T ss_dssp EEECSCSS
T ss_pred EEEEcccC
Confidence 99998765
No 123
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7.6e-19 Score=124.94 Aligned_cols=89 Identities=24% Similarity=0.423 Sum_probs=80.7
Q ss_pred CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
....+.++|||+|||..+++++|+++|++||.|..|.++.+.. .++|||||+|.+.++|.+|+..||+..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4455678999999999999999999999999999999998864 38999999999999999999999999999999999
Q ss_pred eecccCccccc
Q 025858 181 IGWSPVNQLLK 191 (247)
Q Consensus 181 ~~a~~~~~~~~ 191 (247)
.++.++.....
T Consensus 88 ~~a~~~~~~~~ 98 (103)
T 2cq3_A 88 NNATARVMTNS 98 (103)
T ss_dssp EECCSSCCCCC
T ss_pred EEcccCCCCCC
Confidence 99988766543
No 124
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.2e-19 Score=126.17 Aligned_cols=85 Identities=15% Similarity=0.167 Sum_probs=77.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEE
Q 025858 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEI 90 (247)
Q Consensus 12 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v 90 (247)
...+...++|||+|||+++||++|+++|++||. .+++++.++ +++++|||||+|.+.++|++|++ +++.|+|+.|.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (102)
T 1wez_A 9 SFQSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVEL 86 (102)
T ss_dssp SCCCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEE
Confidence 455677889999999999999999999999995 599999998 89999999999999999999998 788999999999
Q ss_pred eeecCCCC
Q 025858 91 KRTIPKGS 98 (247)
Q Consensus 91 ~~~~~~~~ 98 (247)
.++.+...
T Consensus 87 ~~~~~~~~ 94 (102)
T 1wez_A 87 FLNSTAGT 94 (102)
T ss_dssp EEECCCCC
T ss_pred EECCCCCC
Confidence 98876543
No 125
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.9e-19 Score=125.48 Aligned_cols=88 Identities=18% Similarity=0.346 Sum_probs=78.4
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeE-EEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeE
Q 025858 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITD-SVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQ 87 (247)
Q Consensus 10 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~-i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~ 87 (247)
+...+....++|||+|||+++|+++|+++|++||.|.+ +.++.+ .+++++|||||+|.+.++|.+|++ ++..++|+.
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~ 85 (104)
T 1wg5_A 7 GNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 85 (104)
T ss_dssp CCCSSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcE
Confidence 34455567899999999999999999999999999987 888888 589999999999999999999999 788999999
Q ss_pred EEEeeecCCCC
Q 025858 88 VEIKRTIPKGS 98 (247)
Q Consensus 88 i~v~~~~~~~~ 98 (247)
|.|.++.+...
T Consensus 86 i~v~~~~~~~~ 96 (104)
T 1wg5_A 86 IEIFKSSRAEV 96 (104)
T ss_dssp CEEEEECTTTS
T ss_pred EEEEECCHHHH
Confidence 99999876543
No 126
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.8e-19 Score=124.79 Aligned_cols=84 Identities=26% Similarity=0.490 Sum_probs=78.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEE-EEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEee
Q 025858 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDS-VIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKR 92 (247)
Q Consensus 16 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i-~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~ 92 (247)
.+.++|||+|||.++|+++|+++|++||.|.++ +++.++.++.++|||||+|.+.++|.+|++ ++..++|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 567899999999999999999999999999999 999998899999999999999999999998 78899999999999
Q ss_pred ecCCCCC
Q 025858 93 TIPKGSG 99 (247)
Q Consensus 93 ~~~~~~~ 99 (247)
+.+....
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9876554
No 127
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.3e-18 Score=123.67 Aligned_cols=88 Identities=16% Similarity=0.330 Sum_probs=78.5
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeE
Q 025858 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQ 87 (247)
Q Consensus 10 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~ 87 (247)
....+....++|||+|||.++|+++|+++|++||.|.++.++.++. .++|||||+|.+.++|.+|++ ++..++|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cqi_A 7 GMMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKE 84 (103)
T ss_dssp CCCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCe
Confidence 3445667889999999999999999999999999999999999863 368999999999999999998 788999999
Q ss_pred EEEeeecCCCCC
Q 025858 88 VEIKRTIPKGSG 99 (247)
Q Consensus 88 i~v~~~~~~~~~ 99 (247)
|+|.++.+....
T Consensus 85 l~V~~a~~~~~~ 96 (103)
T 2cqi_A 85 VKVNWATTPSSQ 96 (103)
T ss_dssp EEEEECCCTTCC
T ss_pred EEEEECCCCccc
Confidence 999999876543
No 128
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.8e-18 Score=122.92 Aligned_cols=90 Identities=19% Similarity=0.499 Sum_probs=79.9
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCe
Q 025858 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGK 86 (247)
Q Consensus 9 ~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~ 86 (247)
........+.++|||+|||.++|+++|+++|++||.|.+++++.++. .++|||||+|.+.++|.+|++ ++..++|+
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cq3_A 6 SGNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGR 83 (103)
T ss_dssp CCCSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 34456667889999999999999999999999999999999999863 389999999999999999998 78899999
Q ss_pred EEEEeeecCCCCCC
Q 025858 87 QVEIKRTIPKGSGQ 100 (247)
Q Consensus 87 ~i~v~~~~~~~~~~ 100 (247)
.|+|.++.+.....
T Consensus 84 ~l~v~~a~~~~~~~ 97 (103)
T 2cq3_A 84 KIEVNNATARVMTN 97 (103)
T ss_dssp ECEEEECCSSCCCC
T ss_pred EEEEEEcccCCCCC
Confidence 99999998765543
No 129
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.79 E-value=3e-19 Score=131.71 Aligned_cols=91 Identities=16% Similarity=0.287 Sum_probs=83.7
Q ss_pred CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
....+.++|||+|||..+|+++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..|||..+.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34456789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred eecccCccccc
Q 025858 181 IGWSPVNQLLK 191 (247)
Q Consensus 181 ~~a~~~~~~~~ 191 (247)
.++.++.....
T Consensus 97 ~~a~~~~~~~~ 107 (126)
T 3ex7_B 97 DWCFVRGPPKG 107 (126)
T ss_dssp EESEESSSCCC
T ss_pred EEecCCCCCCC
Confidence 99987666543
No 130
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.79 E-value=4e-19 Score=124.81 Aligned_cols=82 Identities=16% Similarity=0.324 Sum_probs=77.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeeec
Q 025858 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTI 94 (247)
Q Consensus 17 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~~ 94 (247)
++++|||+|||.++|+++|+++|++||.|.+++++.++.++.++|||||+|.+.++|.+|++ ++..++|+.|+|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 47899999999999999999999999999999999998889999999999999999999997 7889999999999997
Q ss_pred CCCC
Q 025858 95 PKGS 98 (247)
Q Consensus 95 ~~~~ 98 (247)
+...
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7543
No 131
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2e-19 Score=127.99 Aligned_cols=82 Identities=13% Similarity=0.221 Sum_probs=75.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEEe
Q 025858 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIK 91 (247)
Q Consensus 13 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v~ 91 (247)
.+....++|||+|||+++|+++|+++|++||.|.++.+++++. +.++|||||+|.+.++|.+|+. +++.++|+.|.|.
T Consensus 6 ~~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 6 KNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLIL 84 (103)
T ss_dssp SSCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEE
T ss_pred cccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEE
Confidence 3455678999999999999999999999999999999999986 9999999999999999999999 7889999999999
Q ss_pred eecC
Q 025858 92 RTIP 95 (247)
Q Consensus 92 ~~~~ 95 (247)
++..
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 8754
No 132
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.79 E-value=1.5e-19 Score=121.01 Aligned_cols=75 Identities=35% Similarity=0.674 Sum_probs=72.1
Q ss_pred cEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeec
Q 025858 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGW 183 (247)
Q Consensus 108 ~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 183 (247)
+|||+|||+++++++|+++|++||.|.++.+++++.++.++|||||+|.+.++|++|++ ||+..+.|+.|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998899999999999999999999998 8999999999999875
No 133
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.79 E-value=5.7e-19 Score=126.43 Aligned_cols=81 Identities=17% Similarity=0.284 Sum_probs=77.1
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEee
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIG 182 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 182 (247)
..+.++|||+|||..+++++|+++|++||.|..+.++.+. ++.++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3467899999999999999999999999999999999998 899999999999999999999999999999999999998
Q ss_pred cc
Q 025858 183 WS 184 (247)
Q Consensus 183 a~ 184 (247)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 134
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1e-18 Score=121.46 Aligned_cols=83 Identities=23% Similarity=0.346 Sum_probs=77.7
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEee
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIG 182 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 182 (247)
....++|||+|||.++++++|+++|++| .|.+++++++ .+|+++|+|||+|.+.++|.+|+. ||+..+.|+.|+|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4467899999999999999999999999 9999999999 779999999999999999999999 999999999999999
Q ss_pred cccCcc
Q 025858 183 WSPVNQ 188 (247)
Q Consensus 183 a~~~~~ 188 (247)
+.++..
T Consensus 84 a~~~~~ 89 (91)
T 2dgw_A 84 EKSGPS 89 (91)
T ss_dssp ESSCCC
T ss_pred CCcCCC
Confidence 987643
No 135
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=4.5e-19 Score=124.94 Aligned_cols=85 Identities=16% Similarity=0.249 Sum_probs=77.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEE
Q 025858 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVE 89 (247)
Q Consensus 12 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~ 89 (247)
.......++|||+|||.++|+++|+++|++||.|.++.++.++.++.++|||||+|.+.++|++|++ ++..++|+.|+
T Consensus 9 ~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 88 (98)
T 2cqp_A 9 SSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 88 (98)
T ss_dssp CCCCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 3455667899999999999999999999999999989999998899999999999999999999997 77899999999
Q ss_pred EeeecCC
Q 025858 90 IKRTIPK 96 (247)
Q Consensus 90 v~~~~~~ 96 (247)
|.++...
T Consensus 89 V~~a~~~ 95 (98)
T 2cqp_A 89 LVLGSGP 95 (98)
T ss_dssp EEESSCS
T ss_pred EEEcCCC
Confidence 9998654
No 136
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.6e-19 Score=124.53 Aligned_cols=83 Identities=12% Similarity=0.078 Sum_probs=76.7
Q ss_pred CccccEEEcCCCCCCCHHHHH----HHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEE
Q 025858 104 FKTKKIFVGGIPSSVSEDELK----NFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVS 179 (247)
Q Consensus 104 ~~~~~l~v~~l~~~~t~~~l~----~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~ 179 (247)
.+.++|||+|||..+++++|+ ++|++||.|.+|++++++.+ +|||||+|.+.++|.+|+..|||..+.|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 456799999999999999999 99999999999999998765 88999999999999999999999999999999
Q ss_pred EeecccCccc
Q 025858 180 LIGWSPVNQL 189 (247)
Q Consensus 180 v~~a~~~~~~ 189 (247)
|.++.++...
T Consensus 84 V~~a~~~~~~ 93 (96)
T 2dgx_A 84 VSLATGASGP 93 (96)
T ss_dssp EEECCCSSCC
T ss_pred EEEcCCCCCC
Confidence 9999876543
No 137
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.79 E-value=5.2e-19 Score=126.40 Aligned_cols=90 Identities=22% Similarity=0.451 Sum_probs=80.5
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCcc---C
Q 025858 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHII---N 84 (247)
Q Consensus 10 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l---~ 84 (247)
+.+..+.+.++|||+|||.++|+++|+++|++||.|.+++++.++.++.++|||||+|.+.++|.+|++ ++..+ .
T Consensus 5 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 84 (106)
T 2dgp_A 5 SSGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGM 84 (106)
T ss_dssp CCSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCC
Confidence 334556678999999999999999999999999999999999999889999999999999999999998 66666 8
Q ss_pred CeEEEEeeecCCCCC
Q 025858 85 GKQVEIKRTIPKGSG 99 (247)
Q Consensus 85 g~~i~v~~~~~~~~~ 99 (247)
|+.|+|.++.+....
T Consensus 85 g~~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 85 NRPIQVKPADSESRG 99 (106)
T ss_dssp SSCCEEEECCCCSCC
T ss_pred CceEEEEECCccccc
Confidence 899999999876543
No 138
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.5e-19 Score=129.14 Aligned_cols=84 Identities=12% Similarity=0.117 Sum_probs=77.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCe-eEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEE
Q 025858 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDI-TDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVE 89 (247)
Q Consensus 12 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i-~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~ 89 (247)
...+.+.++|||+|||.++|+++|+++|+.||.| .+++++.++ ++.++|||||+|.+.++|.+|++ ++..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~ 87 (114)
T 2cpy_A 9 GDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAF 87 (114)
T ss_dssp CSCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEE
T ss_pred CCCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEE
Confidence 3455678999999999999999999999999999 899999999 99999999999999999999998 78899999999
Q ss_pred EeeecCC
Q 025858 90 IKRTIPK 96 (247)
Q Consensus 90 v~~~~~~ 96 (247)
|.++.+.
T Consensus 88 v~~a~~~ 94 (114)
T 2cpy_A 88 VHVVTLE 94 (114)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998654
No 139
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.6e-19 Score=126.90 Aligned_cols=87 Identities=23% Similarity=0.339 Sum_probs=80.2
Q ss_pred CccccEEEcCCCCCCCHHHHHHHHHhcCC-eEEEEEE-ecCCCCCceeEEEEEEcCHHHHHHHHHcCC--CcccCCcEEE
Q 025858 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGK-VLEHQII-RDHETNRSRGFGFVIFDSEEVVDEMLSKGN--MIDMAGTQVS 179 (247)
Q Consensus 104 ~~~~~l~v~~l~~~~t~~~l~~~f~~~G~-i~~v~i~-~~~~~~~~~g~afV~f~~~~~a~~ai~~l~--~~~~~g~~l~ 179 (247)
.+.++|||+|||..+++++|+++|++||. |..+.++ .+..++.++|||||+|.+.++|.+|+..|| +..+.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999998 788889999999999999999999999996 5899999999
Q ss_pred EeecccCcccc
Q 025858 180 LIGWSPVNQLL 190 (247)
Q Consensus 180 v~~a~~~~~~~ 190 (247)
|.++.++....
T Consensus 86 V~~a~~~~~~~ 96 (109)
T 2dis_A 86 VDWAEPEIDVD 96 (109)
T ss_dssp EEESCSSCSTT
T ss_pred EEEcCCCCCcC
Confidence 99999876643
No 140
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.8e-19 Score=129.28 Aligned_cols=87 Identities=29% Similarity=0.533 Sum_probs=81.3
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEee
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIG 182 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 182 (247)
....++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+.. ++..+.|+.|+|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred cccCcccc
Q 025858 183 WSPVNQLL 190 (247)
Q Consensus 183 a~~~~~~~ 190 (247)
+.++....
T Consensus 103 a~~~~~~~ 110 (116)
T 1x4b_A 103 AVAREESG 110 (116)
T ss_dssp CSSCCCCC
T ss_pred CCCCccCC
Confidence 98876654
No 141
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.79 E-value=5.6e-19 Score=123.69 Aligned_cols=84 Identities=23% Similarity=0.453 Sum_probs=75.3
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeE
Q 025858 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQ 87 (247)
Q Consensus 10 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~ 87 (247)
..+....+.++|||+|||.++|+++|+++|++||.|.++.++.++. +.++|||||+|.+.++|.+|++ ++..++|+.
T Consensus 8 ~~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (95)
T 2ywk_A 8 MFPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRP 86 (95)
T ss_dssp ----CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCE
Confidence 3445566789999999999999999999999999999999999984 9999999999999999999998 788999999
Q ss_pred EEEeeec
Q 025858 88 VEIKRTI 94 (247)
Q Consensus 88 i~v~~~~ 94 (247)
|+|.++.
T Consensus 87 l~V~~a~ 93 (95)
T 2ywk_A 87 INVSGPS 93 (95)
T ss_dssp CEEECCC
T ss_pred EEEEEcC
Confidence 9999875
No 142
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.79 E-value=6.7e-19 Score=122.55 Aligned_cols=85 Identities=25% Similarity=0.335 Sum_probs=78.5
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEee
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIG 182 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 182 (247)
..+.++|||+|||..+++++|+++|++||.|..+.++++ ++.++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 446789999999999999999999999999999999984 688999999999999999999999999999999999999
Q ss_pred cccCccc
Q 025858 183 WSPVNQL 189 (247)
Q Consensus 183 a~~~~~~ 189 (247)
+.+....
T Consensus 83 a~~~~~~ 89 (92)
T 2dgv_A 83 DRNASGP 89 (92)
T ss_dssp CSCCSSC
T ss_pred cCCCCCC
Confidence 9876543
No 143
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.79 E-value=1.1e-18 Score=133.48 Aligned_cols=88 Identities=17% Similarity=0.166 Sum_probs=82.3
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEee
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIG 182 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 182 (247)
..+.++|||+|||..+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccc
Q 025858 183 WSPVNQLL 190 (247)
Q Consensus 183 a~~~~~~~ 190 (247)
+.+.....
T Consensus 116 a~~~~~~~ 123 (156)
T 1h2v_Z 116 DAGFKEGR 123 (156)
T ss_dssp ESCCCTTC
T ss_pred CCCCCCcC
Confidence 98765543
No 144
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=6.6e-19 Score=124.29 Aligned_cols=84 Identities=19% Similarity=0.448 Sum_probs=77.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCee-EEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeE---
Q 025858 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDIT-DSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQ--- 87 (247)
Q Consensus 14 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~-~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~--- 87 (247)
...+.++|||+|||.++|+++|+++|++||.|. ++++++++.++.++|||||+|.+.++|++|++ ++..++|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345789999999999999999999999999999 99999999899999999999999999999998 788999999
Q ss_pred -EEEeeecCCC
Q 025858 88 -VEIKRTIPKG 97 (247)
Q Consensus 88 -i~v~~~~~~~ 97 (247)
|+|.++.+..
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999987654
No 145
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.79 E-value=6.2e-19 Score=128.49 Aligned_cols=82 Identities=20% Similarity=0.452 Sum_probs=76.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEE
Q 025858 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVE 89 (247)
Q Consensus 12 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~ 89 (247)
..+..+.++|||+|||.++|+++|+++|++||.|.+++++.++.++.++|||||+|.+.++|++|++ ++..++|+.|+
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3445677899999999999999999999999999999999998899999999999999999999998 78899999999
Q ss_pred Eeee
Q 025858 90 IKRT 93 (247)
Q Consensus 90 v~~~ 93 (247)
|.++
T Consensus 114 V~~a 117 (118)
T 2khc_A 114 VQLK 117 (118)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9886
No 146
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=7.8e-19 Score=123.68 Aligned_cols=84 Identities=26% Similarity=0.459 Sum_probs=77.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCC---CCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEE
Q 025858 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRY---TGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEI 90 (247)
Q Consensus 16 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v 90 (247)
.+.++|||+|||.++|+++|+++|++||.|.++.++.++. ++.++|||||+|.+.++|.+|++ ++..++|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 5678999999999999999999999999999999999886 56899999999999999999999 788999999999
Q ss_pred eeecCCCCC
Q 025858 91 KRTIPKGSG 99 (247)
Q Consensus 91 ~~~~~~~~~ 99 (247)
.++.+....
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999776543
No 147
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.79 E-value=1.5e-18 Score=130.17 Aligned_cols=89 Identities=20% Similarity=0.363 Sum_probs=81.5
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEE
Q 025858 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQV 88 (247)
Q Consensus 11 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i 88 (247)
...+....++|||+|||.++|+++|+++|+.||.|.+++++.++.++.++|||||+|.+.++|.+|++ ++..++|+.|
T Consensus 35 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 114 (139)
T 1u6f_A 35 MNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRL 114 (139)
T ss_dssp SSCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEE
T ss_pred cCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 44556678999999999999999999999999999999999999889999999999999999999998 7789999999
Q ss_pred EEeeecCCCCC
Q 025858 89 EIKRTIPKGSG 99 (247)
Q Consensus 89 ~v~~~~~~~~~ 99 (247)
+|.++.+....
T Consensus 115 ~v~~a~~~~~~ 125 (139)
T 1u6f_A 115 KVALAASGHQR 125 (139)
T ss_dssp EEEESSCCCCC
T ss_pred EEEECCCCCCC
Confidence 99999876543
No 148
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=3.6e-18 Score=123.62 Aligned_cols=87 Identities=16% Similarity=0.332 Sum_probs=78.8
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEE
Q 025858 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQV 88 (247)
Q Consensus 11 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i 88 (247)
......+.++|||+|||.++|+++|+++|++||.|.++.++.++ ++.++|||||+|.+.++|.+|++ ++..++|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (114)
T 2do0_A 8 ALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPM 86 (114)
T ss_dssp CCCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEE
Confidence 34455678999999999999999999999999999999999998 69999999999999999999998 7889999999
Q ss_pred EEeeecCCCC
Q 025858 89 EIKRTIPKGS 98 (247)
Q Consensus 89 ~v~~~~~~~~ 98 (247)
.|.++.....
T Consensus 87 ~v~~a~~~~~ 96 (114)
T 2do0_A 87 HVKMDERALP 96 (114)
T ss_dssp EEEECSCCCC
T ss_pred EEEEcccCCC
Confidence 9999875443
No 149
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.78 E-value=8.4e-19 Score=127.90 Aligned_cols=84 Identities=13% Similarity=0.224 Sum_probs=76.5
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCC---eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCe
Q 025858 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGD---ITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGK 86 (247)
Q Consensus 11 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~---i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~ 86 (247)
........++|||+|||.++|+++|+++|+.||. |.+++++.++. ++++|||||+|.+.++|++|++ +++.|+|+
T Consensus 10 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr 88 (118)
T 2db1_A 10 LGPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHR 88 (118)
T ss_dssp SSSCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTE
T ss_pred cCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCe
Confidence 3444567889999999999999999999999998 89999999985 9999999999999999999999 78899999
Q ss_pred EEEEeeecC
Q 025858 87 QVEIKRTIP 95 (247)
Q Consensus 87 ~i~v~~~~~ 95 (247)
.|+|.++..
T Consensus 89 ~i~V~~a~~ 97 (118)
T 2db1_A 89 YIEVFKSHR 97 (118)
T ss_dssp EEEEEEECH
T ss_pred EEEEEECCH
Confidence 999998754
No 150
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-19 Score=130.83 Aligned_cols=85 Identities=21% Similarity=0.363 Sum_probs=79.5
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEee
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIG 182 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 182 (247)
....++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+ .||+..+.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 345679999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred cccCcc
Q 025858 183 WSPVNQ 188 (247)
Q Consensus 183 a~~~~~ 188 (247)
+.++..
T Consensus 101 a~~~~~ 106 (114)
T 2cq4_A 101 SQAEKN 106 (114)
T ss_dssp HHHHHH
T ss_pred cCCCcc
Confidence 876544
No 151
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.6e-19 Score=127.99 Aligned_cols=84 Identities=35% Similarity=0.662 Sum_probs=78.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEEeeec
Q 025858 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTI 94 (247)
Q Consensus 16 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v~~~~ 94 (247)
.+.++|||+|||.++|+++|+++|+.||.|.++.++.++.++.++|||||+|.+.++|.+|++ +++.++|+.|+|.++.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 345899999999999999999999999999999999998899999999999999999999999 7789999999999998
Q ss_pred CCCCC
Q 025858 95 PKGSG 99 (247)
Q Consensus 95 ~~~~~ 99 (247)
+....
T Consensus 105 ~~~~~ 109 (116)
T 1x4b_A 105 AREES 109 (116)
T ss_dssp SCCCC
T ss_pred CCccC
Confidence 76553
No 152
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.78 E-value=2.5e-19 Score=133.14 Aligned_cols=88 Identities=17% Similarity=0.322 Sum_probs=79.7
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeE--EEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccC----
Q 025858 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITD--SVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTH---- 81 (247)
Q Consensus 10 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~--i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~---- 81 (247)
..+......++|||+|||+++||++|+++|++||.|.. |++++|+.+|.++|||||+|.+. +|.+|+. ++.
T Consensus 15 ~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~ 93 (131)
T 2m2b_A 15 SEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPL 93 (131)
T ss_dssp CCCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCc
Confidence 34455577899999999999999999999999999976 99999999999999999999999 9999998 777
Q ss_pred ccCCeEEEEeeecCCCC
Q 025858 82 IINGKQVEIKRTIPKGS 98 (247)
Q Consensus 82 ~l~g~~i~v~~~~~~~~ 98 (247)
.++|+.|.|.++.+...
T Consensus 94 ~~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 94 TIDGKTINVEFAKGSKR 110 (131)
T ss_dssp CGGGCCCCCEECCCSCC
T ss_pred cCCCEEEEEEECCCCCC
Confidence 99999999999977644
No 153
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.1e-18 Score=122.08 Aligned_cols=85 Identities=18% Similarity=0.237 Sum_probs=73.8
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--c--cCccC
Q 025858 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--D--THIIN 84 (247)
Q Consensus 9 ~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~--~~~l~ 84 (247)
+.......++++|||+|||.++||++|+++|++||.|.++.++++ +|||||+|.+.++|.+|++ + +..+.
T Consensus 6 ~~~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~ 79 (101)
T 2cq1_A 6 SGDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLR 79 (101)
T ss_dssp CCCCCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred CCCCccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 334555668899999999999999999999999999999988764 6899999999999999998 3 45799
Q ss_pred CeEEEEeeecCCCCC
Q 025858 85 GKQVEIKRTIPKGSG 99 (247)
Q Consensus 85 g~~i~v~~~~~~~~~ 99 (247)
|++|+|.++.++...
T Consensus 80 Gr~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 80 NQPIYIQYSNHKELK 94 (101)
T ss_dssp TEECEEEECSCSSCC
T ss_pred CcEEEEEEcCcccCc
Confidence 999999999876554
No 154
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=4e-19 Score=128.23 Aligned_cols=87 Identities=15% Similarity=0.211 Sum_probs=79.4
Q ss_pred CCCccccEEEcCCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCCC---CceeEEEEEEcCHHHHHHHHHcCCCcccCC
Q 025858 102 KDFKTKKIFVGGIPSSVSEDELK---NFFSKYGKVLEHQIIRDHETN---RSRGFGFVIFDSEEVVDEMLSKGNMIDMAG 175 (247)
Q Consensus 102 ~~~~~~~l~v~~l~~~~t~~~l~---~~f~~~G~i~~v~i~~~~~~~---~~~g~afV~f~~~~~a~~ai~~l~~~~~~g 175 (247)
.....++|||+|||+++++++|+ ++|++||.|.++.++++..++ .++|||||+|.+.++|.+|++.|||..+.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34567899999999999999999 999999999999999987654 566999999999999999999999999999
Q ss_pred cEEEEeecccCcc
Q 025858 176 TQVSLIGWSPVNQ 188 (247)
Q Consensus 176 ~~l~v~~a~~~~~ 188 (247)
+.|+|.++.++..
T Consensus 91 r~l~V~~a~~k~~ 103 (111)
T 2cpi_A 91 RTLKASLGTTKYC 103 (111)
T ss_dssp EEEEEESCCCCSC
T ss_pred EEEEEEecccccc
Confidence 9999999988763
No 155
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.78 E-value=1.3e-18 Score=120.23 Aligned_cols=80 Identities=23% Similarity=0.576 Sum_probs=75.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEEeeecC
Q 025858 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIP 95 (247)
Q Consensus 17 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v~~~~~ 95 (247)
..++|||+|||.++|+++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|+. ++..++|+.|+|.++.+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 46899999999999999999999999999999999998899999999999999999999998 78899999999999876
Q ss_pred C
Q 025858 96 K 96 (247)
Q Consensus 96 ~ 96 (247)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 156
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2e-18 Score=125.00 Aligned_cols=86 Identities=22% Similarity=0.220 Sum_probs=79.3
Q ss_pred CCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEe
Q 025858 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLI 181 (247)
Q Consensus 102 ~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 181 (247)
.....++|||+|||..+++++|+++|++||.|.+|.++.++ ++.++|||||+|.+.++|.+|+..||+..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34567899999999999999999999999999999999996 59999999999999999999999999999999999999
Q ss_pred ecccCcc
Q 025858 182 GWSPVNQ 188 (247)
Q Consensus 182 ~a~~~~~ 188 (247)
++.....
T Consensus 90 ~a~~~~~ 96 (114)
T 2do0_A 90 MDERALP 96 (114)
T ss_dssp ECSCCCC
T ss_pred EcccCCC
Confidence 9875443
No 157
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.78 E-value=3.6e-19 Score=121.03 Aligned_cols=74 Identities=11% Similarity=0.158 Sum_probs=69.8
Q ss_pred ccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeecc
Q 025858 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWS 184 (247)
Q Consensus 105 ~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 184 (247)
.+..|+|+||++++|+++|+++|.+||+|.++.+.. ++|||||+|.+.++|.+|++.||+..+.|++|+|.+|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 356899999999999999999999999999999854 68999999999999999999999999999999999984
No 158
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.8e-19 Score=126.20 Aligned_cols=83 Identities=16% Similarity=0.245 Sum_probs=74.2
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCC--CcccCCcEEEE
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN--MIDMAGTQVSL 180 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~--~~~~~g~~l~v 180 (247)
..+.++|||+|||+++|+++|+++|++||.|.+|+++++ ||||||+|.+.++|.+|+..|+ +..+.|+.|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 346789999999999999999999999999999999875 6899999999999999999775 47899999999
Q ss_pred eecccCccccc
Q 025858 181 IGWSPVNQLLK 191 (247)
Q Consensus 181 ~~a~~~~~~~~ 191 (247)
.++.++.....
T Consensus 87 ~~A~~~~~~~~ 97 (105)
T 1sjq_A 87 QFSNHKELKTD 97 (105)
T ss_dssp CCCSSSSCCCT
T ss_pred EEcCCCCCCcc
Confidence 99988766543
No 159
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=3.4e-18 Score=118.75 Aligned_cols=83 Identities=14% Similarity=0.321 Sum_probs=76.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEEe
Q 025858 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIK 91 (247)
Q Consensus 13 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v~ 91 (247)
......++|||+|||.++|+++|+++|+.| .|.+++++++ .++.++|||||+|.+.++|.+|++ ++..++|+.|.|.
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEE
Confidence 445678999999999999999999999999 9999999999 589999999999999999999999 7779999999999
Q ss_pred eecCCC
Q 025858 92 RTIPKG 97 (247)
Q Consensus 92 ~~~~~~ 97 (247)
++.+.+
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 997764
No 160
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.78 E-value=1e-19 Score=126.22 Aligned_cols=82 Identities=33% Similarity=0.649 Sum_probs=74.1
Q ss_pred ccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeecccC
Q 025858 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWSPV 186 (247)
Q Consensus 107 ~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~ 186 (247)
++|||+|||.++++++|+++|++||.|.++.+++++.++.++|||||+|.+.+ |.+|+..|||..+.|+.|+|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999999999999999999999999999 99999999999999999999999875
Q ss_pred ccc
Q 025858 187 NQL 189 (247)
Q Consensus 187 ~~~ 189 (247)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 161
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.78 E-value=1.4e-19 Score=128.21 Aligned_cols=82 Identities=18% Similarity=0.255 Sum_probs=76.6
Q ss_pred CCCCCCeEEEcCCCC------CCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCC
Q 025858 14 DGASPGKIFIGGLPK------DTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIING 85 (247)
Q Consensus 14 ~~~~~~~l~v~nLp~------~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g 85 (247)
+...+++|||+|||. ++++++|+++|++||.|.+++++.++.++.++|||||+|.+.++|.+|++ ++..++|
T Consensus 2 ~~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 2 PLGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp CSCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 344578999999999 99999999999999999999999999889999999999999999999997 8889999
Q ss_pred -eEEEEeeecC
Q 025858 86 -KQVEIKRTIP 95 (247)
Q Consensus 86 -~~i~v~~~~~ 95 (247)
+.|+|.++.+
T Consensus 82 ~r~l~V~~a~~ 92 (100)
T 3ns6_A 82 KHRLFLYTMKD 92 (100)
T ss_dssp SCBCEEEESHH
T ss_pred CeEEEEEECch
Confidence 9999999865
No 162
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-19 Score=128.14 Aligned_cols=85 Identities=19% Similarity=0.357 Sum_probs=75.6
Q ss_pred CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecC-CCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEE
Q 025858 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDH-ETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVS 179 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~ 179 (247)
......++|||+|||.++++++|+++|++|| |.+|++++++ .+|+++|||||+|.+.++|.+|+ .|||..+.|+.|+
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3345678999999999999999999999999 9999999998 58999999999999999999999 7999999999999
Q ss_pred EeecccCc
Q 025858 180 LIGWSPVN 187 (247)
Q Consensus 180 v~~a~~~~ 187 (247)
|.++.++.
T Consensus 92 V~~a~~~~ 99 (100)
T 2j76_E 92 VDVADQAQ 99 (100)
T ss_dssp CEECCCSC
T ss_pred EEeccCCC
Confidence 99998754
No 163
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.78 E-value=1e-18 Score=128.45 Aligned_cols=83 Identities=16% Similarity=0.361 Sum_probs=78.4
Q ss_pred ccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeecc
Q 025858 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWS 184 (247)
Q Consensus 105 ~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 184 (247)
+.++|||+|||.++++++|+++|++||.|.+|.+++++.++.++|||||+|.+.++|.+|+ .|||..+.|+.|+|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4679999999999999999999999999999999999889999999999999999999999 799999999999999988
Q ss_pred cCcc
Q 025858 185 PVNQ 188 (247)
Q Consensus 185 ~~~~ 188 (247)
+...
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6543
No 164
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.78 E-value=7.8e-19 Score=125.43 Aligned_cols=84 Identities=15% Similarity=0.294 Sum_probs=76.7
Q ss_pred CCccccEEEcCCCCCC------CHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCc
Q 025858 103 DFKTKKIFVGGIPSSV------SEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGT 176 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~------t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~ 176 (247)
....++|||+|||..+ |+++|+++|++||.|.+|.++ +.+|.++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3456899999999999 789999999999999999988 46789999999999999999999999999999999
Q ss_pred -EEEEeecccCcc
Q 025858 177 -QVSLIGWSPVNQ 188 (247)
Q Consensus 177 -~l~v~~a~~~~~ 188 (247)
.|+|.++.....
T Consensus 90 ~~l~V~~a~~~~k 102 (105)
T 2nlw_A 90 HTFRVNLFTDFDK 102 (105)
T ss_dssp CEEEEECSCCCCC
T ss_pred ceEEEEEcchHhh
Confidence 999999986554
No 165
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=4.6e-19 Score=125.61 Aligned_cols=93 Identities=20% Similarity=0.445 Sum_probs=80.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeeecCC
Q 025858 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIPK 96 (247)
Q Consensus 19 ~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~~~~ 96 (247)
++|||+|||.++|+++|+++|++||.|.++.++.+ ++|||||+|.+.++|.+|++ ++..++|+.|+|.++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 68999999999999999998 788999999999999876
Q ss_pred CCCCCC------CCccccEEEcCCCC
Q 025858 97 GSGQSK------DFKTKKIFVGGIPS 116 (247)
Q Consensus 97 ~~~~~~------~~~~~~l~v~~l~~ 116 (247)
...... .....+|||++|+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~h 101 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLEH 101 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCCC
Confidence 543211 12356899999973
No 166
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.3e-19 Score=120.67 Aligned_cols=76 Identities=32% Similarity=0.618 Sum_probs=73.2
Q ss_pred ccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeec
Q 025858 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGW 183 (247)
Q Consensus 107 ~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 183 (247)
++|||+|||.++++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|.+|+..++ ..+.|+.|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999899999999999999999999999999 9999999999886
No 167
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-19 Score=134.46 Aligned_cols=87 Identities=15% Similarity=0.287 Sum_probs=80.6
Q ss_pred CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEE--EEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCc----ccC
Q 025858 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLE--HQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMI----DMA 174 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~----~~~ 174 (247)
......++|||+|||.++|+++|+++|++||.|.. |+|++|+.+|+++|||||+|.+. +|.+|+..|||. .+.
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 34456789999999999999999999999999977 99999999999999999999999 999999999999 999
Q ss_pred CcEEEEeecccCcc
Q 025858 175 GTQVSLIGWSPVNQ 188 (247)
Q Consensus 175 g~~l~v~~a~~~~~ 188 (247)
|+.|+|.++.++..
T Consensus 97 gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 97 GKTINVEFAKGSKR 110 (131)
T ss_dssp GCCCCCEECCCSCC
T ss_pred CEEEEEEECCCCCC
Confidence 99999999987644
No 168
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.2e-20 Score=125.11 Aligned_cols=81 Identities=22% Similarity=0.448 Sum_probs=76.4
Q ss_pred CccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeec
Q 025858 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGW 183 (247)
Q Consensus 104 ~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 183 (247)
.+.++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|+..|||..+.|+.+++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 35789999999999999999999999999999999999989999999999999999999999999999999999988765
Q ss_pred c
Q 025858 184 S 184 (247)
Q Consensus 184 ~ 184 (247)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 169
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.78 E-value=2.6e-19 Score=125.43 Aligned_cols=81 Identities=25% Similarity=0.280 Sum_probs=76.1
Q ss_pred CccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeec
Q 025858 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGW 183 (247)
Q Consensus 104 ~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 183 (247)
...++|||+|||.++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++.||+..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 025858 184 S 184 (247)
Q Consensus 184 ~ 184 (247)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 170
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=124.81 Aligned_cols=86 Identities=16% Similarity=0.320 Sum_probs=77.6
Q ss_pred CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
....+.++|||+|||..+++++|+++|++||.|..|.++.+ +.++|||||+|.+.++|.+|++.||+..+.|+.|+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34456789999999999999999999999999999999654 568999999999999999999999999999999999
Q ss_pred eecccCccc
Q 025858 181 IGWSPVNQL 189 (247)
Q Consensus 181 ~~a~~~~~~ 189 (247)
.++.++...
T Consensus 94 ~~a~~~~~~ 102 (109)
T 1x4a_A 94 EFPRSGRGT 102 (109)
T ss_dssp ECCCCCCCC
T ss_pred EEcccCCCC
Confidence 999876544
No 171
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.4e-19 Score=124.99 Aligned_cols=82 Identities=21% Similarity=0.326 Sum_probs=72.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--c--cCccCCeEE
Q 025858 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--D--THIINGKQV 88 (247)
Q Consensus 13 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~--~~~l~g~~i 88 (247)
+.+.+.++|||+|||.++||++|+++|++||.|.+++++++ ||||||+|.+.++|.+|++ + +..++|++|
T Consensus 11 ~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l 84 (105)
T 1sjq_A 11 GSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 84 (105)
T ss_dssp -CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 45678899999999999999999999999999999999875 6899999999999999998 3 358999999
Q ss_pred EEeeecCCCCCC
Q 025858 89 EIKRTIPKGSGQ 100 (247)
Q Consensus 89 ~v~~~~~~~~~~ 100 (247)
+|.++.++....
T Consensus 85 ~V~~A~~~~~~~ 96 (105)
T 1sjq_A 85 YIQFSNHKELKT 96 (105)
T ss_dssp CBCCCSSSSCCC
T ss_pred EEEEcCCCCCCc
Confidence 999998765543
No 172
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.77 E-value=2.1e-18 Score=126.82 Aligned_cols=88 Identities=16% Similarity=0.230 Sum_probs=81.2
Q ss_pred CCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEe
Q 025858 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLI 181 (247)
Q Consensus 102 ~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 181 (247)
.....++|||+|||..+++++|+++|++||.|..|.++.++ +|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ecccCcccc
Q 025858 182 GWSPVNQLL 190 (247)
Q Consensus 182 ~a~~~~~~~ 190 (247)
++.+.....
T Consensus 110 ~a~~~~~~~ 118 (124)
T 2kt5_A 110 LVASQIDLE 118 (124)
T ss_dssp EECCTTCCC
T ss_pred EeCCCCCCC
Confidence 998755543
No 173
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=125.55 Aligned_cols=84 Identities=32% Similarity=0.688 Sum_probs=78.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEe
Q 025858 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIK 91 (247)
Q Consensus 14 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~ 91 (247)
+..+.++|||+|||.++|+++|+++|++||.|.++.++.++ ++.++|||||+|.+.++|++|++ ++..++|+.|.|.
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34667899999999999999999999999999999999998 99999999999999999999998 7889999999999
Q ss_pred eecCCCC
Q 025858 92 RTIPKGS 98 (247)
Q Consensus 92 ~~~~~~~ 98 (247)
++.+...
T Consensus 82 ~a~~~~~ 88 (116)
T 2fy1_A 82 QAKKPSF 88 (116)
T ss_dssp ECCCSSC
T ss_pred ECCCCCC
Confidence 9976654
No 174
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.77 E-value=4.3e-19 Score=118.80 Aligned_cols=74 Identities=42% Similarity=0.754 Sum_probs=70.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEEeee
Q 025858 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRT 93 (247)
Q Consensus 20 ~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v~~~ 93 (247)
+|||+|||.++|+++|+++|++||.|.++.++.++.++.++|||||+|.+.++|++|++ ++..++|+.|+|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999999889999999999999999999999 888999999999875
No 175
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=123.39 Aligned_cols=86 Identities=24% Similarity=0.507 Sum_probs=78.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcc-CCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCc-cCCeEE
Q 025858 13 GDGASPGKIFIGGLPKDTTYATFNKHFGK-YGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHI-INGKQV 88 (247)
Q Consensus 13 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~-~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~-l~g~~i 88 (247)
.+..+.++|||+|||.++|+++|+++|++ ||.|.++.++.++ ++.++|||||+|.+.++|.+|++ ++.. ++|+.|
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 34567899999999999999999999999 9999999999999 99999999999999999999998 6777 999999
Q ss_pred EEeeecCCCCC
Q 025858 89 EIKRTIPKGSG 99 (247)
Q Consensus 89 ~v~~~~~~~~~ 99 (247)
.|.++.+....
T Consensus 83 ~v~~a~~~~~~ 93 (104)
T 2dhg_A 83 RLSVAIPKASR 93 (104)
T ss_dssp CCCBCCCCCSC
T ss_pred EEEEccCCCcC
Confidence 99999766543
No 176
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.6e-19 Score=128.46 Aligned_cols=81 Identities=15% Similarity=0.315 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEEeeec
Q 025858 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTI 94 (247)
Q Consensus 16 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v~~~~ 94 (247)
...++|||+|||.++|+++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|+. +++.++|+.|.|.++.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecC
Confidence 345799999999999999999999999999999999999889999999999999999999997 7889999999999986
Q ss_pred CC
Q 025858 95 PK 96 (247)
Q Consensus 95 ~~ 96 (247)
+.
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 54
No 177
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=130.02 Aligned_cols=82 Identities=26% Similarity=0.428 Sum_probs=77.3
Q ss_pred CCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEe
Q 025858 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLI 181 (247)
Q Consensus 102 ~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 181 (247)
...+.++|||+|||..+++++|+++|++||.|..+++++++.++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998999999999999999999999999999999999999998
Q ss_pred ec
Q 025858 182 GW 183 (247)
Q Consensus 182 ~a 183 (247)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 178
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.77 E-value=1.9e-18 Score=129.47 Aligned_cols=85 Identities=22% Similarity=0.436 Sum_probs=77.4
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCe
Q 025858 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGK 86 (247)
Q Consensus 9 ~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~ 86 (247)
........+.++|||+|||.++|+++|+++|++||.|.+++++.++.++.++|||||+|.+.++|.+|++ ++..++|+
T Consensus 54 ~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 133 (140)
T 2ku7_A 54 GGSGGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR 133 (140)
T ss_dssp CSSCSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTE
T ss_pred CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 3445566688999999999999999999999999999999999998899999999999999999999997 77899999
Q ss_pred EEEEeee
Q 025858 87 QVEIKRT 93 (247)
Q Consensus 87 ~i~v~~~ 93 (247)
.|+|.++
T Consensus 134 ~l~v~~A 140 (140)
T 2ku7_A 134 TIRVNLA 140 (140)
T ss_dssp EEEEEC-
T ss_pred EEEEEeC
Confidence 9999875
No 179
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-18 Score=123.26 Aligned_cols=85 Identities=24% Similarity=0.315 Sum_probs=77.6
Q ss_pred CCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEE-EEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLE-HQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 102 ~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
.....++|||+|||.++|+++|+++|++||.|.. +.++.+ .+|+++|||||+|.+.++|.+|+.. |+..+.|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 3456789999999999999999999999999987 888888 7899999999999999999999997 999999999999
Q ss_pred eecccCcc
Q 025858 181 IGWSPVNQ 188 (247)
Q Consensus 181 ~~a~~~~~ 188 (247)
.++.+++.
T Consensus 89 ~~~~~~~~ 96 (104)
T 1wg5_A 89 FKSSRAEV 96 (104)
T ss_dssp EEECTTTS
T ss_pred EECCHHHH
Confidence 99876554
No 180
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.6e-19 Score=126.23 Aligned_cols=85 Identities=21% Similarity=0.483 Sum_probs=78.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEE
Q 025858 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEI 90 (247)
Q Consensus 13 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v 90 (247)
..+.+.++|||+|||.++|+++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|++ ++..++|+.|+|
T Consensus 3 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 82 (104)
T 1p1t_A 3 AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 82 (104)
T ss_dssp CSHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEE
T ss_pred CcCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 344567899999999999999999999999999999999998899999999999999999999997 788999999999
Q ss_pred eeecCCC
Q 025858 91 KRTIPKG 97 (247)
Q Consensus 91 ~~~~~~~ 97 (247)
.++.+..
T Consensus 83 ~~a~~~~ 89 (104)
T 1p1t_A 83 DNAASEK 89 (104)
T ss_dssp EETTCTT
T ss_pred EeCCCcc
Confidence 9987654
No 181
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.77 E-value=7.1e-19 Score=131.18 Aligned_cols=84 Identities=21% Similarity=0.249 Sum_probs=77.6
Q ss_pred CCCccccEEEcCCCCCCCHHHHHHHHHhcCC---eEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEE
Q 025858 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGK---VLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQV 178 (247)
Q Consensus 102 ~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~---i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l 178 (247)
.....++|||+|||+++|+++|+++|++||. |.+|++++++. |+++|||||+|.+.++|.+|++ ||+..+.|+.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3446789999999999999999999999999 89999999977 9999999999999999999999 99999999999
Q ss_pred EEeecccCc
Q 025858 179 SLIGWSPVN 187 (247)
Q Consensus 179 ~v~~a~~~~ 187 (247)
+|.++.+++
T Consensus 118 ~V~~a~~~e 126 (136)
T 2hgl_A 118 EVFKSHRTE 126 (136)
T ss_dssp EEEECCHHH
T ss_pred EEEECChHH
Confidence 999986543
No 182
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.77 E-value=2.6e-18 Score=122.93 Aligned_cols=82 Identities=16% Similarity=0.340 Sum_probs=76.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEE
Q 025858 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVE 89 (247)
Q Consensus 12 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~ 89 (247)
+....+.++|||+|||.++|+++|+++|++||.|.++.++.++ ++.++|||||+|.+.++|.+|++ ++..++|+.|+
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4556678999999999999999999999999999999999999 99999999999999999999999 88899999999
Q ss_pred Eeeec
Q 025858 90 IKRTI 94 (247)
Q Consensus 90 v~~~~ 94 (247)
|.++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99874
No 183
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.77 E-value=6.2e-19 Score=123.45 Aligned_cols=81 Identities=17% Similarity=0.281 Sum_probs=73.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEe
Q 025858 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIK 91 (247)
Q Consensus 14 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~ 91 (247)
.....++|||+|||.++|+++|+++|++||.|.++.++.++.++.++|||||+|.+.++|++|++ ++..++|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~ 90 (95)
T 2ek1_A 11 GKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLS 90 (95)
T ss_dssp ----CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 34456899999999999999999999999999999999998899999999999999999999998 7889999999999
Q ss_pred eec
Q 025858 92 RTI 94 (247)
Q Consensus 92 ~~~ 94 (247)
++.
T Consensus 91 ~a~ 93 (95)
T 2ek1_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred ecc
Confidence 864
No 184
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.1e-18 Score=124.93 Aligned_cols=84 Identities=24% Similarity=0.445 Sum_probs=77.9
Q ss_pred CCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCccc--------
Q 025858 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDM-------- 173 (247)
Q Consensus 102 ~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~-------- 173 (247)
...+.++|||+|||..+++++|+++|++||.|..+++++++ ++.++|||||+|.+.++|.+|+..|||..+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34567899999999999999999999999999999999997 899999999999999999999999999999
Q ss_pred CCcEEEEeecccC
Q 025858 174 AGTQVSLIGWSPV 186 (247)
Q Consensus 174 ~g~~l~v~~a~~~ 186 (247)
.++.|.|.++.++
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5788999998864
No 185
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=119.81 Aligned_cols=82 Identities=21% Similarity=0.470 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCC-cceEEEEEecCHHHHHHHHh--ccCccCCeEEEEee
Q 025858 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQ-PRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKR 92 (247)
Q Consensus 16 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~-~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~ 92 (247)
..+++|||+|||.++|+++|+++|++||.|.++.++.++.++. ++|||||+|.+.++|.+|++ ++..++|+.|+|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3568999999999999999999999999999999999987655 89999999999999999998 88899999999999
Q ss_pred ecCCC
Q 025858 93 TIPKG 97 (247)
Q Consensus 93 ~~~~~ 97 (247)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87653
No 186
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.77 E-value=1.1e-18 Score=128.72 Aligned_cols=92 Identities=20% Similarity=0.425 Sum_probs=82.6
Q ss_pred CCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCC
Q 025858 8 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIING 85 (247)
Q Consensus 8 ~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g 85 (247)
..+.+....+.++|||+|||.++|+++|+++|+.||.|.++.++.++.++.++|||||+|.+.++|.+|++ ++..++|
T Consensus 12 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 91 (126)
T 3ex7_B 12 DEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG 91 (126)
T ss_dssp --CCBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 34555666778899999999999999999999999999999999998899999999999999999999997 8889999
Q ss_pred eEEEEeeecCCCCC
Q 025858 86 KQVEIKRTIPKGSG 99 (247)
Q Consensus 86 ~~i~v~~~~~~~~~ 99 (247)
+.|.|.++.+....
T Consensus 92 ~~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 92 QPISVDWCFVRGPP 105 (126)
T ss_dssp SBCEEEESEESSSC
T ss_pred eEEEEEEecCCCCC
Confidence 99999999776553
No 187
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.77 E-value=7e-19 Score=131.37 Aligned_cols=89 Identities=24% Similarity=0.455 Sum_probs=81.2
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEE
Q 025858 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQV 88 (247)
Q Consensus 11 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i 88 (247)
.+.+..+.++|||+|||.++|+++|+++|++||.|.++.++.++.++.++|||||+|.+.++|++|++ ++..++|+.|
T Consensus 40 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 119 (135)
T 2lea_A 40 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 119 (135)
T ss_dssp SCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34555678899999999999999999999999999999999998899999999999999999999998 7889999999
Q ss_pred EEeeecCCCCC
Q 025858 89 EIKRTIPKGSG 99 (247)
Q Consensus 89 ~v~~~~~~~~~ 99 (247)
+|.++.+....
T Consensus 120 ~V~~a~~~~~~ 130 (135)
T 2lea_A 120 RVQMARYGRPP 130 (135)
T ss_dssp EEEECCCCCCC
T ss_pred EEEECCCCCCC
Confidence 99999876543
No 188
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=2e-19 Score=127.51 Aligned_cols=96 Identities=20% Similarity=0.392 Sum_probs=82.7
Q ss_pred CCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-cc
Q 025858 2 GSKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DT 80 (247)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~ 80 (247)
|+.....+.........++|||+|||.++|+++|+++|++||.|.. .++.+..++.++|||||+|.+.++|.+|++ ++
T Consensus 1 G~~~~~~p~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g 79 (101)
T 1fj7_A 1 GSHMLEDPVEGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTG 79 (101)
T ss_dssp CCCCCCCSCCSTTCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGG
T ss_pred CCCcCCCCCCcccCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCC
Confidence 3444455555666778899999999999999999999999999887 667776689999999999999999999999 78
Q ss_pred CccCCeEEEEeeecCCCC
Q 025858 81 HIINGKQVEIKRTIPKGS 98 (247)
Q Consensus 81 ~~l~g~~i~v~~~~~~~~ 98 (247)
..++|+.|+|.++.+...
T Consensus 80 ~~~~g~~l~V~~a~~~~~ 97 (101)
T 1fj7_A 80 LKVFGNEIKLEKPKGRDG 97 (101)
T ss_dssp CCBTTBCCEEECCSCCCC
T ss_pred cEECCcEEEEEEcCCCCC
Confidence 899999999999976544
No 189
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.76 E-value=1.5e-18 Score=121.85 Aligned_cols=79 Identities=11% Similarity=0.128 Sum_probs=71.9
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcc--cCCcEEEE
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMID--MAGTQVSL 180 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~--~~g~~l~v 180 (247)
..++++|||+|||.++|+++|+++|++||.|.++.+++ .||+|||+|.+.++|.+|++.|++.. +.|++|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 44678999999999999999999999999999999975 36899999999999999999999876 78999999
Q ss_pred eecccCc
Q 025858 181 IGWSPVN 187 (247)
Q Consensus 181 ~~a~~~~ 187 (247)
.++..++
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998754
No 190
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.76 E-value=8.7e-18 Score=123.50 Aligned_cols=86 Identities=14% Similarity=0.266 Sum_probs=79.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEE
Q 025858 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEI 90 (247)
Q Consensus 13 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v 90 (247)
......++|||+|||.++|+++|+++|++||.|.++.++.++ ++.++|||||+|.+.++|.+|++ ++..++|+.|+|
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 455677899999999999999999999999999999999998 99999999999999999999998 788999999999
Q ss_pred eeecCCCCC
Q 025858 91 KRTIPKGSG 99 (247)
Q Consensus 91 ~~~~~~~~~ 99 (247)
.++.+....
T Consensus 109 ~~a~~~~~~ 117 (124)
T 2kt5_A 109 QLVASQIDL 117 (124)
T ss_dssp EEECCTTCC
T ss_pred EEeCCCCCC
Confidence 999875543
No 191
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.76 E-value=8.8e-19 Score=124.38 Aligned_cols=85 Identities=26% Similarity=0.594 Sum_probs=77.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHhccCccCCeEEEEee
Q 025858 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKR 92 (247)
Q Consensus 13 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~l~g~~i~v~~ 92 (247)
.....+++|||+|||.++|+++|+++|++||.|.++.++.++ ++.++|||||+|.+.++|++|+++++.++|+.|.|.+
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 4 EGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLKLGP 82 (102)
T ss_dssp CCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTTCCCEETTEECEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHhCCCeECCEEEEEEE
Confidence 344567899999999999999999999999999999999998 9999999999999999999999988899999999999
Q ss_pred ecCCCC
Q 025858 93 TIPKGS 98 (247)
Q Consensus 93 ~~~~~~ 98 (247)
+.+...
T Consensus 83 a~~~~~ 88 (102)
T 2xs2_A 83 AIRKQN 88 (102)
T ss_dssp EEECC-
T ss_pred CCcCcc
Confidence 876543
No 192
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.76 E-value=4.3e-19 Score=125.63 Aligned_cols=87 Identities=15% Similarity=0.337 Sum_probs=73.1
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecC-CCCCcceEEEEEecCHHHHHHHHh-ccCccCCe
Q 025858 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDR-YTGQPRGFGFITYADPSVVDKVIE-DTHIINGK 86 (247)
Q Consensus 9 ~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~-~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~ 86 (247)
.+........++|||+|||.++|+++|+++|+.|| |.+++++.++ .++.++|||||+|.+.++|.+|+. ++..++|+
T Consensus 10 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~ 88 (100)
T 2j76_E 10 HRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNR 88 (100)
T ss_dssp ----------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTB
T ss_pred CCCcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCe
Confidence 34555667889999999999999999999999999 9999999998 589999999999999999999998 78899999
Q ss_pred EEEEeeecCC
Q 025858 87 QVEIKRTIPK 96 (247)
Q Consensus 87 ~i~v~~~~~~ 96 (247)
.|+|.++.+.
T Consensus 89 ~l~V~~a~~~ 98 (100)
T 2j76_E 89 RIRVDVADQA 98 (100)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEeccCC
Confidence 9999998764
No 193
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.5e-18 Score=121.75 Aligned_cols=84 Identities=13% Similarity=0.169 Sum_probs=74.5
Q ss_pred CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcC--CCcccCCcEE
Q 025858 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG--NMIDMAGTQV 178 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l--~~~~~~g~~l 178 (247)
....+.++|||+|||..+++++|+++|++||.|.++.++++ +|||||+|.+.++|.+|+..| ++..+.|+.|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 34456789999999999999999999999999999998764 789999999999999999976 5678999999
Q ss_pred EEeecccCcccc
Q 025858 179 SLIGWSPVNQLL 190 (247)
Q Consensus 179 ~v~~a~~~~~~~ 190 (247)
.|.++.++....
T Consensus 84 ~V~~a~~~~~~~ 95 (101)
T 2cq1_A 84 YIQYSNHKELKT 95 (101)
T ss_dssp EEEECSCSSCCC
T ss_pred EEEEcCcccCcC
Confidence 999998766654
No 194
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=9.3e-19 Score=126.89 Aligned_cols=83 Identities=12% Similarity=0.139 Sum_probs=77.5
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCe-EEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEe
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKV-LEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLI 181 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 181 (247)
..+.++|||+|||.++|+++|+++|++||.| ..|.|+.++ ++.++|||||+|.+.++|.+|+.. |+..+.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 4467899999999999999999999999999 899999998 899999999999999999999997 9999999999999
Q ss_pred ecccCc
Q 025858 182 GWSPVN 187 (247)
Q Consensus 182 ~a~~~~ 187 (247)
++.++.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 987654
No 195
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.8e-18 Score=121.46 Aligned_cols=84 Identities=14% Similarity=0.222 Sum_probs=72.4
Q ss_pred CCCCCCCCCCCeEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--cc--Ccc
Q 025858 9 NPHTGDGASPGKIFIGGLPK-DTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DT--HII 83 (247)
Q Consensus 9 ~~~~~~~~~~~~l~v~nLp~-~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~--~~l 83 (247)
.+......++++|||+|||. ++||++|+++|++||.|.++.++++ +|||||+|.+.++|.+|++ ++ ..+
T Consensus 6 ~~~~~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~ 79 (102)
T 1x4d_A 6 SGQKGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALV 79 (102)
T ss_dssp CCCCCCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEE
T ss_pred CCCCCCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceE
Confidence 34445556889999999999 9999999999999999999999865 3799999999999999998 44 359
Q ss_pred CCeEEEEeeecCCCC
Q 025858 84 NGKQVEIKRTIPKGS 98 (247)
Q Consensus 84 ~g~~i~v~~~~~~~~ 98 (247)
.|++|+|.++.....
T Consensus 80 ~Gr~l~V~~a~~~~~ 94 (102)
T 1x4d_A 80 FGKPVRVHLSQKYKR 94 (102)
T ss_dssp TTEECEEEEECCCTT
T ss_pred CCcEEEEEECCCCCC
Confidence 999999999986443
No 196
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.76 E-value=3.6e-18 Score=118.82 Aligned_cols=83 Identities=18% Similarity=0.481 Sum_probs=75.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEe
Q 025858 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIK 91 (247)
Q Consensus 14 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~ 91 (247)
...+.++|||+|||.++|+++|+++|++||.|.++.++++ ++.++|||||+|.+.++|.+|++ ++..++|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3457789999999999999999999999999999999984 78999999999999999999998 7889999999999
Q ss_pred eecCCCC
Q 025858 92 RTIPKGS 98 (247)
Q Consensus 92 ~~~~~~~ 98 (247)
++.+...
T Consensus 82 ~a~~~~~ 88 (92)
T 2dgv_A 82 IDRNASG 88 (92)
T ss_dssp ECSCCSS
T ss_pred EcCCCCC
Confidence 9877544
No 197
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.7e-18 Score=121.91 Aligned_cols=84 Identities=20% Similarity=0.423 Sum_probs=75.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCcc------
Q 025858 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHII------ 83 (247)
Q Consensus 12 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l------ 83 (247)
..+..+.++|||+|||.++|+++|+++|++||.|.+++++.++ ++.++|||||+|.+.++|.+|++ ++..+
T Consensus 19 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 19 KQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 3455678999999999999999999999999999999999998 99999999999999999999998 77777
Q ss_pred --CCeEEEEeeecCC
Q 025858 84 --NGKQVEIKRTIPK 96 (247)
Q Consensus 84 --~g~~i~v~~~~~~ 96 (247)
.+++|.|.++.+.
T Consensus 98 ~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 98 SAPTEPLLCKFSGPS 112 (114)
T ss_dssp CCCSSCBEEEECCCS
T ss_pred cCCCCceeEEccCCC
Confidence 5788999988753
No 198
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8.5e-18 Score=120.74 Aligned_cols=87 Identities=21% Similarity=0.356 Sum_probs=76.6
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCe
Q 025858 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGK 86 (247)
Q Consensus 9 ~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~ 86 (247)
.....+..+.++|||+|||.++|+++|+++|++||.|.++.+..+ +.++|||||+|.+.++|++|++ ++..++|+
T Consensus 13 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 89 (109)
T 1x4a_A 13 VIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY 89 (109)
T ss_dssp CSSCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 344555667899999999999999999999999999999999653 5689999999999999999997 78899999
Q ss_pred EEEEeeecCCCC
Q 025858 87 QVEIKRTIPKGS 98 (247)
Q Consensus 87 ~i~v~~~~~~~~ 98 (247)
.|+|.++.+...
T Consensus 90 ~l~V~~a~~~~~ 101 (109)
T 1x4a_A 90 RLRVEFPRSGRG 101 (109)
T ss_dssp ECEEECCCCCCC
T ss_pred EEEEEEcccCCC
Confidence 999999977654
No 199
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.9e-18 Score=123.69 Aligned_cols=87 Identities=18% Similarity=0.320 Sum_probs=77.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHH---HHhccCCCeeEEEEeecCCCC---CcceEEEEEecCHHHHHHHHh--ccCcc
Q 025858 12 TGDGASPGKIFIGGLPKDTTYATFN---KHFGKYGDITDSVIMKDRYTG---QPRGFGFITYADPSVVDKVIE--DTHII 83 (247)
Q Consensus 12 ~~~~~~~~~l~v~nLp~~~te~~l~---~~f~~~G~i~~i~~~~~~~~~---~~~g~afV~f~~~~~a~~a~~--~~~~l 83 (247)
.......++|||+|||+++|+++|+ ++|++||.|.++.++.++.++ .++|||||+|.+.++|++|++ ++..+
T Consensus 9 ~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 88 (111)
T 2cpi_A 9 SVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV 88 (111)
T ss_dssp CCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred cccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE
Confidence 3455678899999999999999999 999999999999999887644 566999999999999999999 78899
Q ss_pred CCeEEEEeeecCCCC
Q 025858 84 NGKQVEIKRTIPKGS 98 (247)
Q Consensus 84 ~g~~i~v~~~~~~~~ 98 (247)
+|+.|+|.++.++..
T Consensus 89 ~gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 89 DGRTLKASLGTTKYC 103 (111)
T ss_dssp TTEEEEEESCCCCSC
T ss_pred CCEEEEEEecccccc
Confidence 999999999987653
No 200
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=2.9e-18 Score=126.43 Aligned_cols=85 Identities=12% Similarity=0.243 Sum_probs=75.7
Q ss_pred CCccccEEEcCCCCCCCHHHHH----HHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEE
Q 025858 103 DFKTKKIFVGGIPSSVSEDELK----NFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQV 178 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~----~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l 178 (247)
..+.++|||+|||+.+++++|+ ++|++||.|.+|.+.. ++.++|||||+|.+.++|..|+..|||..+.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3457899999999999999876 6999999999988754 57899999999999999999999999999999999
Q ss_pred EEeecccCcccc
Q 025858 179 SLIGWSPVNQLL 190 (247)
Q Consensus 179 ~v~~a~~~~~~~ 190 (247)
+|.++..+....
T Consensus 103 ~V~~a~~~~~~~ 114 (127)
T 2a3j_A 103 VITFSETPQSQV 114 (127)
T ss_dssp EEEECCCCCHHH
T ss_pred EEEEccCcchhc
Confidence 999998765543
No 201
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.76 E-value=5.7e-18 Score=129.45 Aligned_cols=87 Identities=16% Similarity=0.248 Sum_probs=80.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEE
Q 025858 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVE 89 (247)
Q Consensus 12 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~ 89 (247)
.....+.++|||+|||.++|+++|+++|++||.|.+|.++.++.++.++|||||+|.+.++|++|++ ++..|+|+.|.
T Consensus 33 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 112 (156)
T 1h2v_Z 33 EKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIR 112 (156)
T ss_dssp CTTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3444578999999999999999999999999999999999999899999999999999999999998 78899999999
Q ss_pred EeeecCCCC
Q 025858 90 IKRTIPKGS 98 (247)
Q Consensus 90 v~~~~~~~~ 98 (247)
|.++.+...
T Consensus 113 V~~a~~~~~ 121 (156)
T 1h2v_Z 113 TDWDAGFKE 121 (156)
T ss_dssp EEEESCCCT
T ss_pred EEECCCCCC
Confidence 999987544
No 202
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.5e-18 Score=127.68 Aligned_cols=82 Identities=13% Similarity=0.276 Sum_probs=74.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEEee
Q 025858 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKR 92 (247)
Q Consensus 14 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v~~ 92 (247)
.....++|||+|||+++|+++|+++|+.||.|.++.++.+..++.++|||||+|.+.++|.+|++ ++..|+|+.|.|.+
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEE
Confidence 34567899999999999999999999999999887777777799999999999999999999999 88899999999999
Q ss_pred ecC
Q 025858 93 TIP 95 (247)
Q Consensus 93 ~~~ 95 (247)
+.+
T Consensus 101 a~~ 103 (124)
T 1wel_A 101 ITK 103 (124)
T ss_dssp ECH
T ss_pred CCH
Confidence 864
No 203
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.76 E-value=8.9e-19 Score=119.10 Aligned_cols=73 Identities=16% Similarity=0.345 Sum_probs=67.8
Q ss_pred cccEEEcCCCCCC------CHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCc-EE
Q 025858 106 TKKIFVGGIPSSV------SEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGT-QV 178 (247)
Q Consensus 106 ~~~l~v~~l~~~~------t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~-~l 178 (247)
+++|||+|||..+ ++++|+++|++||.|.++.++ +.+|.++|||||+|.+.++|.+|+..|||..+.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 779999999999999999987 46789999999999999999999999999999999 88
Q ss_pred EE
Q 025858 179 SL 180 (247)
Q Consensus 179 ~v 180 (247)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 204
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=9.8e-19 Score=123.84 Aligned_cols=81 Identities=10% Similarity=0.094 Sum_probs=72.3
Q ss_pred CCccccEEEcCCCC-CCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCc--ccCCcEEE
Q 025858 103 DFKTKKIFVGGIPS-SVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMI--DMAGTQVS 179 (247)
Q Consensus 103 ~~~~~~l~v~~l~~-~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~--~~~g~~l~ 179 (247)
..+.++|||+|||+ ++|+++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|+..||+. .+.|+.|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34678999999999 9999999999999999999999765 479999999999999999988864 49999999
Q ss_pred EeecccCccc
Q 025858 180 LIGWSPVNQL 189 (247)
Q Consensus 180 v~~a~~~~~~ 189 (247)
|.++......
T Consensus 86 V~~a~~~~~~ 95 (102)
T 1x4d_A 86 VHLSQKYKRI 95 (102)
T ss_dssp EEEECCCTTS
T ss_pred EEECCCCCCC
Confidence 9999865443
No 205
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-18 Score=125.41 Aligned_cols=85 Identities=25% Similarity=0.471 Sum_probs=78.0
Q ss_pred CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
......++|||+|||.++++++|+++|++||.|..++++++. +.++|||||+|.+.++|.+|+..|||..+.|+.|+|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 445567899999999999999999999999999999999885 448999999999999999999999999999999999
Q ss_pred eecccCc
Q 025858 181 IGWSPVN 187 (247)
Q Consensus 181 ~~a~~~~ 187 (247)
.++.++.
T Consensus 102 ~~a~~~~ 108 (109)
T 2err_A 102 NNATARV 108 (109)
T ss_dssp EECCCSC
T ss_pred EECCCCc
Confidence 9998753
No 206
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=7.3e-18 Score=119.99 Aligned_cols=82 Identities=13% Similarity=0.197 Sum_probs=71.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccC--ccCCeE
Q 025858 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTH--IINGKQ 87 (247)
Q Consensus 12 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~--~l~g~~ 87 (247)
.....++++|||+|||.++||++|+++|++||.|.++.++++ ||||||+|.+.++|.+|++ ++. .++|++
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~ 82 (104)
T 1wex_A 9 HHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQ 82 (104)
T ss_dssp CCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSB
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 345567899999999999999999999999999999998764 6899999999999999998 333 599999
Q ss_pred EEEeeecCCCCC
Q 025858 88 VEIKRTIPKGSG 99 (247)
Q Consensus 88 i~v~~~~~~~~~ 99 (247)
|+|.++.++...
T Consensus 83 l~V~~a~~~~~~ 94 (104)
T 1wex_A 83 AFFNYSTSKRIT 94 (104)
T ss_dssp CEEEECSSSSCC
T ss_pred EEEEEccCcccc
Confidence 999999876543
No 207
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.7e-18 Score=121.98 Aligned_cols=83 Identities=20% Similarity=0.251 Sum_probs=75.6
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEee
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIG 182 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 182 (247)
....++|||+|||+++|+++|+++|++||. ++|+|++++ +++++|||||+|.+.++|++|+. +|+..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 345689999999999999999999999995 599999997 89999999999999999999995 799999999999998
Q ss_pred cccCcc
Q 025858 183 WSPVNQ 188 (247)
Q Consensus 183 a~~~~~ 188 (247)
+.+...
T Consensus 89 ~~~~~~ 94 (102)
T 1wez_A 89 NSTAGT 94 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 876554
No 208
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.76 E-value=5e-19 Score=118.45 Aligned_cols=74 Identities=35% Similarity=0.607 Sum_probs=70.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEEeee
Q 025858 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRT 93 (247)
Q Consensus 20 ~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v~~~ 93 (247)
+|||+|||.++|+++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|++ +++.++|+.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 69999999999999999999999999999999999889999999999999999999999 778999999998874
No 209
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.76 E-value=2.8e-18 Score=131.11 Aligned_cols=79 Identities=20% Similarity=0.420 Sum_probs=74.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCC--CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEee
Q 025858 17 SPGKIFIGGLPKDTTYATFNKHFGKYG--DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKR 92 (247)
Q Consensus 17 ~~~~l~v~nLp~~~te~~l~~~f~~~G--~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~ 92 (247)
..++|||+|||.++|+++|+++|+.|| .|.+++++.|+.+|.++|||||+|.+.++|.+|++ ++..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 467999999999999999999999999 99999999999999999999999999999999998 78899999999999
Q ss_pred ecC
Q 025858 93 TIP 95 (247)
Q Consensus 93 ~~~ 95 (247)
+.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 865
No 210
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=9e-19 Score=117.74 Aligned_cols=75 Identities=37% Similarity=0.741 Sum_probs=70.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEEeee
Q 025858 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRT 93 (247)
Q Consensus 19 ~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v~~~ 93 (247)
++|||+|||.++|+++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|++ ....++|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 579999999999999999999999999999999998889999999999999999999998 238999999999886
No 211
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.7e-18 Score=120.90 Aligned_cols=84 Identities=21% Similarity=0.353 Sum_probs=75.8
Q ss_pred CCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEe
Q 025858 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLI 181 (247)
Q Consensus 102 ~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 181 (247)
...+.++|||+|||..+++++|+++|++||.| +++.+ .++.++|||||+|.+.++|.+|+..||+..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 44568899999999999999999999999987 56666 678999999999999999999999999999999999999
Q ss_pred ecccCccc
Q 025858 182 GWSPVNQL 189 (247)
Q Consensus 182 ~a~~~~~~ 189 (247)
++.++...
T Consensus 87 ~a~~~~~~ 94 (101)
T 2fc9_A 87 LQGPRGSP 94 (101)
T ss_dssp ECSSCCCC
T ss_pred EcCCCCCC
Confidence 99887554
No 212
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.75 E-value=4.5e-18 Score=131.30 Aligned_cols=90 Identities=19% Similarity=0.370 Sum_probs=79.3
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeE
Q 025858 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQ 87 (247)
Q Consensus 10 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~ 87 (247)
+.+....+.++|||+|||.++|+++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|+. ++..|+|+.
T Consensus 64 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 143 (165)
T 1rk8_A 64 PGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 143 (165)
T ss_dssp --CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 344455677899999999999999999999999999999999998899999999999999999999998 788999999
Q ss_pred EEEeeecCCCCC
Q 025858 88 VEIKRTIPKGSG 99 (247)
Q Consensus 88 i~v~~~~~~~~~ 99 (247)
|.|.++.+....
T Consensus 144 l~V~~a~~~~~~ 155 (165)
T 1rk8_A 144 IQVDWCFVKGPK 155 (165)
T ss_dssp CEEEESEECC--
T ss_pred EEEEEecCCCCC
Confidence 999999876553
No 213
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.75 E-value=5.9e-18 Score=118.89 Aligned_cols=80 Identities=14% Similarity=0.239 Sum_probs=69.2
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccC--ccCCe
Q 025858 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTH--IINGK 86 (247)
Q Consensus 11 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~--~l~g~ 86 (247)
+.....++++|||+|||.++||++|+++|++||.|.++++++ .||+|||+|.+.++|.+|++ ++. .+.|+
T Consensus 14 ~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr 87 (100)
T 3r27_A 14 DPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGH 87 (100)
T ss_dssp ---CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTE
T ss_pred ccccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCc
Confidence 344556889999999999999999999999999999999985 36899999999999999998 444 48899
Q ss_pred EEEEeeecCC
Q 025858 87 QVEIKRTIPK 96 (247)
Q Consensus 87 ~i~v~~~~~~ 96 (247)
+|+|.++.++
T Consensus 88 ~i~V~~S~~k 97 (100)
T 3r27_A 88 PAFVNYSTSQ 97 (100)
T ss_dssp EEEEEECSCS
T ss_pred EEEEEecccc
Confidence 9999998764
No 214
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=2.7e-18 Score=123.25 Aligned_cols=78 Identities=14% Similarity=0.303 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEEeeec
Q 025858 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTI 94 (247)
Q Consensus 16 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v~~~~ 94 (247)
...++|||+|||.++|+++|+++|+.| .|.+|.++.++ .|+++|||||+|.+.++|.+|+. +++.|+|+.|.|..+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 446799999999999999999999999 89999999998 49999999999999999999998 8889999999998775
Q ss_pred C
Q 025858 95 P 95 (247)
Q Consensus 95 ~ 95 (247)
+
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 215
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.7e-18 Score=124.68 Aligned_cols=84 Identities=15% Similarity=0.238 Sum_probs=75.0
Q ss_pred CCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCC--cccCCcEEE
Q 025858 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNM--IDMAGTQVS 179 (247)
Q Consensus 102 ~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~--~~~~g~~l~ 179 (247)
...+.++|||+|||+++|+++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.|++ ..+.|+.|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3446789999999999999999999999999999999875 68999999999999999998874 689999999
Q ss_pred EeecccCccccc
Q 025858 180 LIGWSPVNQLLK 191 (247)
Q Consensus 180 v~~a~~~~~~~~ 191 (247)
|.++.++.....
T Consensus 101 V~~a~~k~~~~~ 112 (119)
T 2ad9_A 101 IQFSNHKELKTD 112 (119)
T ss_dssp EEECSSSSCCCC
T ss_pred EEEccCCCCCcc
Confidence 999988766543
No 216
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.75 E-value=8e-19 Score=117.42 Aligned_cols=75 Identities=29% Similarity=0.606 Sum_probs=71.6
Q ss_pred cEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeec
Q 025858 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGW 183 (247)
Q Consensus 108 ~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 183 (247)
+|||+|||.++++++|+++|++||.|.++.+++++.++.++|||||+|.+.++|.+|++. ++..+.|+.|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999999999999999999999999999995 899999999999875
No 217
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.75 E-value=6.6e-18 Score=129.29 Aligned_cols=87 Identities=24% Similarity=0.467 Sum_probs=79.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEE
Q 025858 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVE 89 (247)
Q Consensus 12 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~ 89 (247)
.......++|||+|||.++|+++|+++|++||.|.+++++.++.++.++|||||+|.+.++|.+|++ ++..++|+.|+
T Consensus 64 ~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 143 (158)
T 2kn4_A 64 HMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 143 (158)
T ss_dssp CCCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3444668899999999999999999999999999999999998899999999999999999999997 78899999999
Q ss_pred EeeecCCCC
Q 025858 90 IKRTIPKGS 98 (247)
Q Consensus 90 v~~~~~~~~ 98 (247)
|.++.+...
T Consensus 144 v~~a~~~~~ 152 (158)
T 2kn4_A 144 VQMARYGRP 152 (158)
T ss_dssp EEEECCSSC
T ss_pred EEECCCCCC
Confidence 999987644
No 218
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=3.2e-19 Score=126.43 Aligned_cols=86 Identities=22% Similarity=0.271 Sum_probs=77.8
Q ss_pred CCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEe
Q 025858 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLI 181 (247)
Q Consensus 102 ~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 181 (247)
.....++|||+|||.++++++|+++|++||.|.. .++.+..++.++|||||+|.+.++|.+|++ ||+..+.|+.|+|.
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3446789999999999999999999999999888 677777778999999999999999999999 99999999999999
Q ss_pred ecccCccc
Q 025858 182 GWSPVNQL 189 (247)
Q Consensus 182 ~a~~~~~~ 189 (247)
++.++...
T Consensus 91 ~a~~~~~~ 98 (101)
T 1fj7_A 91 KPKGRDGT 98 (101)
T ss_dssp CCSCCCCS
T ss_pred EcCCCCCC
Confidence 99876554
No 219
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.75 E-value=1.9e-18 Score=126.02 Aligned_cols=82 Identities=23% Similarity=0.269 Sum_probs=76.3
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCC---eEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEE
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGK---VLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVS 179 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~---i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~ 179 (247)
....++|||+|||.++|+++|+++|++||. |..|+++.++. |+++|||||+|.+.++|.+|+. +|+..+.|+.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 445788999999999999999999999999 89999999976 9999999999999999999999 899999999999
Q ss_pred EeecccC
Q 025858 180 LIGWSPV 186 (247)
Q Consensus 180 v~~a~~~ 186 (247)
|.++..+
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9988653
No 220
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8e-19 Score=129.12 Aligned_cols=84 Identities=18% Similarity=0.235 Sum_probs=77.4
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEee
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIG 182 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 182 (247)
....++|||+|||.++|+++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|+. ||+..+.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3456899999999999999999999999999987777777889999999999999999999999 999999999999999
Q ss_pred cccCc
Q 025858 183 WSPVN 187 (247)
Q Consensus 183 a~~~~ 187 (247)
+.++.
T Consensus 101 a~~~~ 105 (124)
T 1wel_A 101 ITKKG 105 (124)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 87644
No 221
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.75 E-value=3.7e-18 Score=127.28 Aligned_cols=82 Identities=13% Similarity=0.224 Sum_probs=75.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCC---eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEE
Q 025858 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGD---ITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQV 88 (247)
Q Consensus 13 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~---i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i 88 (247)
.+....++|||+|||+++||++|+++|++||. |.+++++.++. |+++|||||+|.+.++|++|++ ++..|+|+.|
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i 117 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYI 117 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEE
Confidence 44567789999999999999999999999999 89999999985 9999999999999999999999 7889999999
Q ss_pred EEeeecC
Q 025858 89 EIKRTIP 95 (247)
Q Consensus 89 ~v~~~~~ 95 (247)
.|.++.+
T Consensus 118 ~V~~a~~ 124 (136)
T 2hgl_A 118 EVFKSHR 124 (136)
T ss_dssp EEEECCH
T ss_pred EEEECCh
Confidence 9998753
No 222
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.6e-18 Score=122.32 Aligned_cols=83 Identities=19% Similarity=0.294 Sum_probs=73.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--c--cCccCCeE
Q 025858 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--D--THIINGKQ 87 (247)
Q Consensus 12 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~--~~~l~g~~ 87 (247)
.....++++|||+|||+++||++|+++|++||.|.+++++++ +|||||+|.+.++|.+|++ + +..+.|++
T Consensus 25 ~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~ 98 (119)
T 2ad9_A 25 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 98 (119)
T ss_dssp TSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBC
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeE
Confidence 445567899999999999999999999999999999999875 6899999999999999998 3 35899999
Q ss_pred EEEeeecCCCCCC
Q 025858 88 VEIKRTIPKGSGQ 100 (247)
Q Consensus 88 i~v~~~~~~~~~~ 100 (247)
|+|.++.++....
T Consensus 99 l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 99 IYIQFSNHKELKT 111 (119)
T ss_dssp CEEEECSSSSCCC
T ss_pred EEEEEccCCCCCc
Confidence 9999998766543
No 223
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5e-18 Score=120.42 Aligned_cols=86 Identities=30% Similarity=0.435 Sum_probs=78.3
Q ss_pred CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
....+.++|||+|||..+++++|+++|++|+ .+.++.++.++.++|||||+|.+.++|.+|+..||+..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 4456788999999999999999999999873 6788888888999999999999999999999999999999999999
Q ss_pred eecccCccc
Q 025858 181 IGWSPVNQL 189 (247)
Q Consensus 181 ~~a~~~~~~ 189 (247)
.++.++...
T Consensus 87 ~~a~~~~~~ 95 (102)
T 2fc8_A 87 DWAKPKGEG 95 (102)
T ss_dssp EECCCCCSS
T ss_pred EEecCCCCC
Confidence 999887654
No 224
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.3e-19 Score=120.04 Aligned_cols=79 Identities=22% Similarity=0.432 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEee
Q 025858 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKR 92 (247)
Q Consensus 15 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~ 92 (247)
..+.++|||+|||.++|+++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|++ ++..++|+.+++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 3567899999999999999999999999999999999998899999999999999999999998 77789998887766
Q ss_pred e
Q 025858 93 T 93 (247)
Q Consensus 93 ~ 93 (247)
+
T Consensus 82 ~ 82 (85)
T 1x4e_A 82 P 82 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 225
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=118.50 Aligned_cols=84 Identities=19% Similarity=0.373 Sum_probs=74.3
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEE
Q 025858 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQV 88 (247)
Q Consensus 11 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i 88 (247)
....+.+.++|||+|||.++|+++|+++|++||.| +++.+ .++.++|||||+|.+.++|++|++ ++..++|+.|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 83 (101)
T 2fc9_A 8 NSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 83 (101)
T ss_dssp CCCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEE
T ss_pred CccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEE
Confidence 34456778999999999999999999999999976 56666 488999999999999999999998 7779999999
Q ss_pred EEeeecCCCC
Q 025858 89 EIKRTIPKGS 98 (247)
Q Consensus 89 ~v~~~~~~~~ 98 (247)
+|.++.+...
T Consensus 84 ~v~~a~~~~~ 93 (101)
T 2fc9_A 84 RLELQGPRGS 93 (101)
T ss_dssp EEEECSSCCC
T ss_pred EEEEcCCCCC
Confidence 9999987654
No 226
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4.1e-18 Score=121.28 Aligned_cols=83 Identities=17% Similarity=0.157 Sum_probs=73.4
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCc--ccCCcEEEE
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMI--DMAGTQVSL 180 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~--~~~g~~l~v 180 (247)
..+.++|||+|||.++++++|+++|++||.|.++.++++ ||||||+|.+.++|.+|+..|++. .+.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 446789999999999999999999999999999998763 689999999999999999988654 599999999
Q ss_pred eecccCccccc
Q 025858 181 IGWSPVNQLLK 191 (247)
Q Consensus 181 ~~a~~~~~~~~ 191 (247)
.++..+.....
T Consensus 86 ~~a~~~~~~~~ 96 (104)
T 1wex_A 86 NYSTSKRITRP 96 (104)
T ss_dssp EECSSSSCCCS
T ss_pred EEccCccccCC
Confidence 99988665543
No 227
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-17 Score=119.83 Aligned_cols=81 Identities=22% Similarity=0.281 Sum_probs=74.5
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCC-----cE
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAG-----TQ 177 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g-----~~ 177 (247)
....++|||+|||.++++++|+++|++||.|..|.++.+ |||||+|.+.++|++|++.||+..+.| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 345789999999999999999999999999999999876 799999999999999999999999999 99
Q ss_pred EEEeecccCcccc
Q 025858 178 VSLIGWSPVNQLL 190 (247)
Q Consensus 178 l~v~~a~~~~~~~ 190 (247)
|+|.++.++....
T Consensus 85 i~V~~a~~~~~~~ 97 (108)
T 1x4c_A 85 IRVKVDGPRSPSY 97 (108)
T ss_dssp EEEEESSCCSCCC
T ss_pred EEEEeCCCCCCCC
Confidence 9999998866543
No 228
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.75 E-value=3e-18 Score=139.03 Aligned_cols=82 Identities=16% Similarity=0.316 Sum_probs=77.4
Q ss_pred ccccEEEcCCCCCCCHHHHHHHHHhcC--CeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEee
Q 025858 105 KTKKIFVGGIPSSVSEDELKNFFSKYG--KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIG 182 (247)
Q Consensus 105 ~~~~l~v~~l~~~~t~~~l~~~f~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 182 (247)
..++|||+||+..+|+++|+++|++|| .|++|+|++++.+++++|||||+|.+.++|.+||..||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 025858 183 WSPV 186 (247)
Q Consensus 183 a~~~ 186 (247)
+.+.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8754
No 229
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=117.59 Aligned_cols=83 Identities=17% Similarity=0.375 Sum_probs=73.4
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccC--C
Q 025858 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIIN--G 85 (247)
Q Consensus 10 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~--g 85 (247)
.......++++|||+|||.++|+++|+++|++||.|.++.+..+ +|||||+|.+.++|++|++ ++..++ |
T Consensus 9 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g 82 (97)
T 1why_A 9 IGYGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPD 82 (97)
T ss_dssp CCCCCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSS
T ss_pred ccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCC
Confidence 34455667899999999999999999999999999999988754 6899999999999999998 778899 9
Q ss_pred eEEEEeeecCCCC
Q 025858 86 KQVEIKRTIPKGS 98 (247)
Q Consensus 86 ~~i~v~~~~~~~~ 98 (247)
+.|+|.++.++..
T Consensus 83 ~~l~V~~a~~~~~ 95 (97)
T 1why_A 83 RRLRVDFAKSGPS 95 (97)
T ss_dssp CBCEEEECCCCCC
T ss_pred cEEEEEECCCCCC
Confidence 9999999987643
No 230
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=6.7e-18 Score=117.03 Aligned_cols=80 Identities=24% Similarity=0.538 Sum_probs=73.8
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEee
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIG 182 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 182 (247)
..+.++|||+|||.++++++|+++|++||.|..+.++ +|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4567899999999999999999999999999999996 56999999999999999999999999999999999
Q ss_pred cccCcccc
Q 025858 183 WSPVNQLL 190 (247)
Q Consensus 183 a~~~~~~~ 190 (247)
+.++....
T Consensus 77 a~~~~~~~ 84 (90)
T 2dnq_A 77 SKNKSKAS 84 (90)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 98866543
No 231
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.75 E-value=5.3e-19 Score=132.29 Aligned_cols=125 Identities=16% Similarity=0.127 Sum_probs=75.5
Q ss_pred eEEEEEecCHHHHHHHHhccCc-cCCeEEEEeeecCCCCCCCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEE
Q 025858 61 GFGFITYADPSVVDKVIEDTHI-INGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQII 139 (247)
Q Consensus 61 g~afV~f~~~~~a~~a~~~~~~-l~g~~i~v~~~~~~~~~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~ 139 (247)
|+||.+|.-.+.+..++.+... ..|...--.. ............++|||+|||.++|+++|+++|++|| |++|.|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~gg~~~g~~~--g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~ 78 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGS--GDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIE 78 (139)
T ss_dssp ---------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECC
T ss_pred CcccccccCccccchhcccchhccCCCCCCCCC--CCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEE
Confidence 5677777777776666653332 2222221111 1111122334567999999999999999999999999 6799999
Q ss_pred ecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeecccCcccc
Q 025858 140 RDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWSPVNQLL 190 (247)
Q Consensus 140 ~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~~~~~ 190 (247)
+++. ++++|||||+|.+.++|++|+ .+|+..+.|+.|+|..+.++....
T Consensus 79 ~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~~~ 127 (139)
T 2hgn_A 79 IGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGASN 127 (139)
T ss_dssp CSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC--
T ss_pred ECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCCCC
Confidence 9976 999999999999999999999 689999999999999988766543
No 232
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.5e-18 Score=121.66 Aligned_cols=85 Identities=19% Similarity=0.339 Sum_probs=77.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCC-eeEEEEe-ecCCCCCcceEEEEEecCHHHHHHHHh--c--cCccCCeEE
Q 025858 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGD-ITDSVIM-KDRYTGQPRGFGFITYADPSVVDKVIE--D--THIINGKQV 88 (247)
Q Consensus 15 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~-i~~i~~~-~~~~~~~~~g~afV~f~~~~~a~~a~~--~--~~~l~g~~i 88 (247)
..+.++|||+|||.++|+++|+++|++||. |.++.++ .++.++.++|||||+|.+.++|.+|++ + +..++|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 346789999999999999999999999998 9999998 788788999999999999999999998 3 478999999
Q ss_pred EEeeecCCCCC
Q 025858 89 EIKRTIPKGSG 99 (247)
Q Consensus 89 ~v~~~~~~~~~ 99 (247)
+|.++.+....
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999876553
No 233
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.2e-18 Score=118.72 Aligned_cols=81 Identities=5% Similarity=0.076 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEE
Q 025858 15 GASPGKIFIGGLPKDTTYATFN----KHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQV 88 (247)
Q Consensus 15 ~~~~~~l~v~nLp~~~te~~l~----~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i 88 (247)
....++|||+|||.++|+++|+ ++|++||.|.+++++.++.+ +|||||+|.+.++|.+|++ ++..++|+.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3456899999999999999999 99999999999999998754 8899999999999999998 7889999999
Q ss_pred EEeeecCCCC
Q 025858 89 EIKRTIPKGS 98 (247)
Q Consensus 89 ~v~~~~~~~~ 98 (247)
+|.++.+...
T Consensus 83 ~V~~a~~~~~ 92 (96)
T 2dgx_A 83 LVSLATGASG 92 (96)
T ss_dssp EEEECCCSSC
T ss_pred EEEEcCCCCC
Confidence 9999976543
No 234
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=2.9e-18 Score=123.11 Aligned_cols=80 Identities=28% Similarity=0.344 Sum_probs=73.7
Q ss_pred CccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeec
Q 025858 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGW 183 (247)
Q Consensus 104 ~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 183 (247)
.+..+|||+|||.++|+++|+++|++| .|.+|.|+.++. |+++|||||+|.+.++|.+|+ .+|+..+.|+.|.|..+
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 346799999999999999999999999 899999999965 999999999999999999999 58999999999999887
Q ss_pred ccC
Q 025858 184 SPV 186 (247)
Q Consensus 184 ~~~ 186 (247)
.++
T Consensus 91 ~~~ 93 (109)
T 2dnn_A 91 TER 93 (109)
T ss_dssp CHH
T ss_pred Ccc
Confidence 643
No 235
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=8.2e-18 Score=118.25 Aligned_cols=80 Identities=14% Similarity=0.267 Sum_probs=73.4
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccC--CcEEEE
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMA--GTQVSL 180 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~--g~~l~v 180 (247)
..+.++|||+|||..+++++|+++|++||.|.++.++++ +|||||+|.+.++|.+|++.||+..+. |+.|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 345789999999999999999999999999999998653 779999999999999999999999999 999999
Q ss_pred eecccCcc
Q 025858 181 IGWSPVNQ 188 (247)
Q Consensus 181 ~~a~~~~~ 188 (247)
.++.++..
T Consensus 88 ~~a~~~~~ 95 (97)
T 1why_A 88 DFAKSGPS 95 (97)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99987653
No 236
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-18 Score=126.19 Aligned_cols=88 Identities=19% Similarity=0.228 Sum_probs=75.3
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEee
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIG 182 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 182 (247)
..+.++|||+|||.++|+++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34678999999999999999999999999984332222223688999999999999999999999999999999999999
Q ss_pred cccCcccc
Q 025858 183 WSPVNQLL 190 (247)
Q Consensus 183 a~~~~~~~ 190 (247)
+.++....
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpx_A 102 GKNKKQRS 109 (115)
T ss_dssp CCCCSCCC
T ss_pred ccCCCCCC
Confidence 98866543
No 237
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.74 E-value=8.4e-18 Score=123.52 Aligned_cols=82 Identities=21% Similarity=0.563 Sum_probs=76.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEEeeecC
Q 025858 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIP 95 (247)
Q Consensus 17 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v~~~~~ 95 (247)
..++|||+|||.++|+++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|++ ++..++|+.|+|.++.+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 46799999999999999999999999999999999998899999999999999999999998 78899999999999876
Q ss_pred CCC
Q 025858 96 KGS 98 (247)
Q Consensus 96 ~~~ 98 (247)
...
T Consensus 115 ~~~ 117 (124)
T 2jwn_A 115 NMP 117 (124)
T ss_dssp CCS
T ss_pred CCC
Confidence 544
No 238
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.74 E-value=2.2e-18 Score=126.68 Aligned_cols=84 Identities=20% Similarity=0.359 Sum_probs=74.5
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCee--EEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCe
Q 025858 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDIT--DSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGK 86 (247)
Q Consensus 10 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~--~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~ 86 (247)
+...+....++|||+|||+++||++|+++|++| .|. +|+++.++. |+++|||||+|.+.++|++|++ ++..|+|+
T Consensus 34 ~~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR 111 (126)
T 2hgm_A 34 SNSADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHR 111 (126)
T ss_dssp -CTTCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTB
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCE
Confidence 344555678899999999999999999999999 566 899999985 9999999999999999999999 67899999
Q ss_pred EEEEeeecC
Q 025858 87 QVEIKRTIP 95 (247)
Q Consensus 87 ~i~v~~~~~ 95 (247)
.|.|..+.+
T Consensus 112 ~I~V~~a~~ 120 (126)
T 2hgm_A 112 YIEVFKSSQ 120 (126)
T ss_dssp CCCCEEECH
T ss_pred EEEEEECCH
Confidence 999988754
No 239
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.2e-18 Score=121.54 Aligned_cols=84 Identities=21% Similarity=0.566 Sum_probs=76.3
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEE
Q 025858 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQV 88 (247)
Q Consensus 11 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i 88 (247)
...+....++|||+|||.++|+++|+++|++||.|.++.++.++ +.++|||||+|.+.++|++|++ ++..++|+.|
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 44556678999999999999999999999999999999999986 3489999999999999999998 7889999999
Q ss_pred EEeeecCC
Q 025858 89 EIKRTIPK 96 (247)
Q Consensus 89 ~v~~~~~~ 96 (247)
+|.++.++
T Consensus 100 ~V~~a~~~ 107 (109)
T 2err_A 100 EVNNATAR 107 (109)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 99998764
No 240
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=114.30 Aligned_cols=78 Identities=18% Similarity=0.444 Sum_probs=71.6
Q ss_pred CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcC-CCcccCCcEEE
Q 025858 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG-NMIDMAGTQVS 179 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l-~~~~~~g~~l~ 179 (247)
......++|||+|||..+++++|+++|++||.|..+.++++ +|||||+|.+.++|.+|+..| ++..+.|+.|+
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 34456789999999999999999999999999999999864 789999999999999999998 99999999999
Q ss_pred Eeecc
Q 025858 180 LIGWS 184 (247)
Q Consensus 180 v~~a~ 184 (247)
|.|++
T Consensus 81 v~~ak 85 (85)
T 2ytc_A 81 VKWGR 85 (85)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99874
No 241
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.74 E-value=5.7e-18 Score=121.84 Aligned_cols=79 Identities=22% Similarity=0.264 Sum_probs=71.2
Q ss_pred ccccEEEcCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeec
Q 025858 105 KTKKIFVGGIPSSVSEDELKNFFSKYG-KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGW 183 (247)
Q Consensus 105 ~~~~l~v~~l~~~~t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 183 (247)
...+|||+|||+++++++|+++|++|| .|..+.+.. +.++|||||+|.+.++|++|+..|||..+.|+.|+|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 467999999999999999999999999 899998853 347899999999999999999999999999999999998
Q ss_pred ccCc
Q 025858 184 SPVN 187 (247)
Q Consensus 184 ~~~~ 187 (247)
...+
T Consensus 103 ~~~p 106 (111)
T 2jvr_A 103 DNPP 106 (111)
T ss_dssp CC--
T ss_pred CCCC
Confidence 7544
No 242
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.9e-17 Score=116.41 Aligned_cols=85 Identities=29% Similarity=0.542 Sum_probs=76.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEE
Q 025858 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVE 89 (247)
Q Consensus 12 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~ 89 (247)
.....+.++|||+|||.++|+++|+++|+.|+ .+.++.++.++.++|||||+|.+.++|.+|++ ++..|+|+.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34556789999999999999999999999774 68888888899999999999999999999998 88899999999
Q ss_pred EeeecCCCCC
Q 025858 90 IKRTIPKGSG 99 (247)
Q Consensus 90 v~~~~~~~~~ 99 (247)
|.++.++...
T Consensus 86 V~~a~~~~~~ 95 (102)
T 2fc8_A 86 LDWAKPKGEG 95 (102)
T ss_dssp EEECCCCCSS
T ss_pred EEEecCCCCC
Confidence 9999876553
No 243
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7e-18 Score=121.21 Aligned_cols=83 Identities=20% Similarity=0.419 Sum_probs=76.0
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEee
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIG 182 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 182 (247)
....++|||+|||..+++++|+++|++||.|..|.++++ +|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 345789999999999999999999999999999999876 67999999999999999999999999999999999
Q ss_pred cccCccccc
Q 025858 183 WSPVNQLLK 191 (247)
Q Consensus 183 a~~~~~~~~ 191 (247)
+.++.....
T Consensus 96 a~~~~~~~~ 104 (109)
T 1x4g_A 96 GKESPDMTS 104 (109)
T ss_dssp CCCCCSSCC
T ss_pred cCCCCCCCC
Confidence 988766543
No 244
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.74 E-value=4e-18 Score=120.97 Aligned_cols=84 Identities=33% Similarity=0.609 Sum_probs=77.1
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEee
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIG 182 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 182 (247)
....++|||+|||.++++++|+++|++||.|..+.++.++ ++.++|||||+|.+.++|.+|+. ++..+.|+.|.|.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 3457899999999999999999999999999999999998 89999999999999999999998 89999999999999
Q ss_pred cccCccc
Q 025858 183 WSPVNQL 189 (247)
Q Consensus 183 a~~~~~~ 189 (247)
+.++...
T Consensus 83 a~~~~~~ 89 (102)
T 2xs2_A 83 AIRKQNL 89 (102)
T ss_dssp EEECC--
T ss_pred CCcCcch
Confidence 8876554
No 245
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=7.9e-18 Score=118.35 Aligned_cols=82 Identities=12% Similarity=0.196 Sum_probs=73.3
Q ss_pred CCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEe
Q 025858 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLI 181 (247)
Q Consensus 102 ~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 181 (247)
.....++|||+|||..+++++|+++|++||.|. +.++.+ .++|||||+|.+.++|.+|+..|||..+.|+.|+|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 344578999999999999999999999999997 667654 578999999999999999999999999999999999
Q ss_pred ecccCcc
Q 025858 182 GWSPVNQ 188 (247)
Q Consensus 182 ~a~~~~~ 188 (247)
++.++..
T Consensus 90 ~a~~~~~ 96 (97)
T 2e5j_A 90 LARQQRD 96 (97)
T ss_dssp ECCCCCC
T ss_pred EcCCCCC
Confidence 9987643
No 246
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=115.83 Aligned_cols=82 Identities=22% Similarity=0.373 Sum_probs=74.3
Q ss_pred CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
......++|||+|||..+++++|+++|++||.|..+.+++ +||||+|.+.++|.+|+..||+..+.|+.|+|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 3445678999999999999999999999999999999964 39999999999999999999999999999999
Q ss_pred eecccCcccc
Q 025858 181 IGWSPVNQLL 190 (247)
Q Consensus 181 ~~a~~~~~~~ 190 (247)
.++.++....
T Consensus 77 ~~a~~~~~~~ 86 (92)
T 2dgt_A 77 QLSTSRLRTA 86 (92)
T ss_dssp EESSCCCSCC
T ss_pred EEccCCCCCC
Confidence 9998876544
No 247
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.74 E-value=1.7e-17 Score=127.36 Aligned_cols=95 Identities=17% Similarity=0.374 Sum_probs=85.5
Q ss_pred cccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeeccc
Q 025858 106 TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWSP 185 (247)
Q Consensus 106 ~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 185 (247)
+++|||+|||+++++++|+++|++||.|.++.+++++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57899999999999999999999999999999999988999999999999999999999999999999999999999988
Q ss_pred CcccccceeEEEehh
Q 025858 186 VNQLLKGYLFIVYNV 200 (247)
Q Consensus 186 ~~~~~~~~~~~~~~~ 200 (247)
.............+.
T Consensus 82 ~~~~~~~~~l~v~nl 96 (167)
T 1fxl_A 82 SSASIRDANLYVSGL 96 (167)
T ss_dssp CCGGGTTCEEEEESC
T ss_pred CcccCCCCcEEECCC
Confidence 766555444444443
No 248
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.9e-17 Score=116.82 Aligned_cols=85 Identities=28% Similarity=0.485 Sum_probs=75.1
Q ss_pred CCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCC
Q 025858 8 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIING 85 (247)
Q Consensus 8 ~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g 85 (247)
+.+......+.++|||+|||.++|+++|+++|++||.|.++.+.++ +|||||+|.+.++|.+|++ ++..++|
T Consensus 5 s~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g 78 (99)
T 2cpj_A 5 SSGGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRG 78 (99)
T ss_dssp SSCCSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTT
T ss_pred CCCCCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 3444556678899999999999999999999999999999999854 6899999999999999997 7889999
Q ss_pred eEEEEeeecCCCC
Q 025858 86 KQVEIKRTIPKGS 98 (247)
Q Consensus 86 ~~i~v~~~~~~~~ 98 (247)
+.|+|.++.+...
T Consensus 79 ~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 79 KQLRVRFACHSAS 91 (99)
T ss_dssp BCCEEEESSCCSC
T ss_pred ceEEEEEcCCCCC
Confidence 9999999977544
No 249
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.74 E-value=5.1e-18 Score=121.77 Aligned_cols=82 Identities=23% Similarity=0.422 Sum_probs=72.7
Q ss_pred CCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEE
Q 025858 100 QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVS 179 (247)
Q Consensus 100 ~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~ 179 (247)
.......++|||+|||.++++++|+++|++||.|..+.++ +|||||+|.+.++|.+|+..|||..+.|+.|+
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3445678899999999999999999999999999999996 67999999999999999999999999999999
Q ss_pred EeecccCccc
Q 025858 180 LIGWSPVNQL 189 (247)
Q Consensus 180 v~~a~~~~~~ 189 (247)
|.++.++...
T Consensus 97 V~~a~~~~~r 106 (108)
T 2jvo_A 97 VVYSKLPAKR 106 (108)
T ss_dssp EESCSCCC--
T ss_pred EEEecCCCCC
Confidence 9999876543
No 250
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=5.6e-18 Score=119.55 Aligned_cols=83 Identities=25% Similarity=0.496 Sum_probs=75.3
Q ss_pred CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
....+.++|||+|||..+++++|+++|++||.|..+.++++ +|||||+|.+.++|.+|++.||+..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 33456789999999999999999999999999999999754 689999999999999999999999999999999
Q ss_pred eecccCccc
Q 025858 181 IGWSPVNQL 189 (247)
Q Consensus 181 ~~a~~~~~~ 189 (247)
.++.++...
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2cpj_A 84 RFACHSASL 92 (99)
T ss_dssp EESSCCSCC
T ss_pred EEcCCCCCC
Confidence 999886654
No 251
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=6.1e-18 Score=118.62 Aligned_cols=83 Identities=20% Similarity=0.304 Sum_probs=74.7
Q ss_pred CCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
....+.++|||+|||..+++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..|||..+.|+.|+|
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345567899999999999999999999999988766 245889999999999999999999999999999999999
Q ss_pred eecccCcc
Q 025858 181 IGWSPVNQ 188 (247)
Q Consensus 181 ~~a~~~~~ 188 (247)
.++.++..
T Consensus 86 ~~a~~~~~ 93 (96)
T 1fjc_A 86 YYTGEKGG 93 (96)
T ss_dssp EECSSSCC
T ss_pred EEcCCCCC
Confidence 99987654
No 252
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.73 E-value=2.4e-18 Score=123.31 Aligned_cols=83 Identities=19% Similarity=0.173 Sum_probs=75.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCC---eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeE
Q 025858 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGD---ITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQ 87 (247)
Q Consensus 12 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~---i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~ 87 (247)
..+....++|||+|||+++|+++|+++|+.||. |.+++++.++. |.++|||||+|.+.++|.+|++ ++..++|+.
T Consensus 5 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 83 (107)
T 2lmi_A 5 EEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRY 83 (107)
T ss_dssp CCCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSC
T ss_pred cCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeE
Confidence 345567889999999999999999999999998 89999999986 9999999999999999999999 788999999
Q ss_pred EEEeeecC
Q 025858 88 VEIKRTIP 95 (247)
Q Consensus 88 i~v~~~~~ 95 (247)
|.|.++.+
T Consensus 84 i~V~~a~~ 91 (107)
T 2lmi_A 84 VEVYEINN 91 (107)
T ss_dssp CCCEECCH
T ss_pred EEEEECCH
Confidence 99988754
No 253
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=1.8e-19 Score=131.03 Aligned_cols=88 Identities=17% Similarity=0.286 Sum_probs=82.0
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccC
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLE--------HQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMA 174 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~ 174 (247)
..+.++|||+|||.++++++|+++|++||.|.. +.++.++.++.++|||||+|.+.++|.+|+..||+..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 346789999999999999999999999999998 999999888999999999999999999999999999999
Q ss_pred CcEEEEeecccCcccc
Q 025858 175 GTQVSLIGWSPVNQLL 190 (247)
Q Consensus 175 g~~l~v~~a~~~~~~~ 190 (247)
|+.|+|.++.++....
T Consensus 84 g~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 84 GNPIKVSFATRRADFN 99 (116)
Confidence 9999999998876653
No 254
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.73 E-value=1.3e-17 Score=117.31 Aligned_cols=79 Identities=25% Similarity=0.475 Sum_probs=71.5
Q ss_pred CCCCccccEEEcCCCC-CCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEE
Q 025858 101 SKDFKTKKIFVGGIPS-SVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVS 179 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~-~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~ 179 (247)
....+.++|||+|||. .+++++|+++|++||.|.++.+ ++|||||+|.+.++|.+|+..|||..+.|+.|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE--------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3445688999999998 9999999999999999999998 378999999999999999999999999999999
Q ss_pred EeecccCc
Q 025858 180 LIGWSPVN 187 (247)
Q Consensus 180 v~~a~~~~ 187 (247)
|.++.++.
T Consensus 89 V~~a~~~~ 96 (97)
T 2xnq_A 89 LEVSSSNA 96 (97)
T ss_dssp EEECCCCC
T ss_pred EEecCCCC
Confidence 99987653
No 255
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.73 E-value=6.8e-18 Score=122.38 Aligned_cols=83 Identities=11% Similarity=0.335 Sum_probs=76.0
Q ss_pred CccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeec
Q 025858 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGW 183 (247)
Q Consensus 104 ~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 183 (247)
...++|||+|||..+++++|+++|++||.|.++.++.+ +.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 35679999999999999999999999999999999876 556999999999999999999999999999999999999
Q ss_pred ccCccc
Q 025858 184 SPVNQL 189 (247)
Q Consensus 184 ~~~~~~ 189 (247)
.++...
T Consensus 83 ~~~~~~ 88 (115)
T 3lqv_A 83 NANRAF 88 (115)
T ss_dssp CHHHHT
T ss_pred cCChhh
Confidence 875443
No 256
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.73 E-value=3.4e-18 Score=120.08 Aligned_cols=84 Identities=20% Similarity=0.370 Sum_probs=76.1
Q ss_pred CCccccEEEcCCCCCCCHHHHH----HHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEE
Q 025858 103 DFKTKKIFVGGIPSSVSEDELK----NFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQV 178 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~----~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l 178 (247)
..+.++|||+|||.++++++|+ ++|++||.|..+.++. ++.++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3467899999999999999999 9999999999999874 36789999999999999999999999999999999
Q ss_pred EEeecccCccc
Q 025858 179 SLIGWSPVNQL 189 (247)
Q Consensus 179 ~v~~a~~~~~~ 189 (247)
+|.++.++...
T Consensus 82 ~v~~a~~~~~~ 92 (97)
T 1nu4_A 82 RIQYAKTDSDI 92 (97)
T ss_dssp EEEECSSCCTH
T ss_pred EEEEccCCCcc
Confidence 99999886543
No 257
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.2e-17 Score=115.65 Aligned_cols=81 Identities=23% Similarity=0.292 Sum_probs=73.1
Q ss_pred CCCCccccEEEcCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEE
Q 025858 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKY--GKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQV 178 (247)
Q Consensus 101 ~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l 178 (247)
....+.++|||+|||..+++++|+++|++| |.|..+.++ +|||||+|.+.++|.+|+..||+..+.|+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 334567899999999999999999999999 999999873 5699999999999999999999999999999
Q ss_pred EEeecccCccc
Q 025858 179 SLIGWSPVNQL 189 (247)
Q Consensus 179 ~v~~a~~~~~~ 189 (247)
+|.++.++...
T Consensus 82 ~v~~a~~~~~~ 92 (99)
T 2cpd_A 82 EVTLAKPVDKD 92 (99)
T ss_dssp EEECCCCCCCC
T ss_pred EEEECCCCCCC
Confidence 99999886653
No 258
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-17 Score=116.17 Aligned_cols=85 Identities=13% Similarity=0.365 Sum_probs=73.9
Q ss_pred CCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCC
Q 025858 8 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIING 85 (247)
Q Consensus 8 ~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g 85 (247)
..+...+....++|||+|||.++|+++|+++|++||.|. +.++.+ .++|||||+|.+.++|.+|++ ++..++|
T Consensus 9 ~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 83 (97)
T 2e5j_A 9 GSPPGEGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGT 83 (97)
T ss_dssp CCCCCSSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSS
T ss_pred CCCCCCCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 344555667789999999999999999999999999996 666653 578999999999999999997 7889999
Q ss_pred eEEEEeeecCCC
Q 025858 86 KQVEIKRTIPKG 97 (247)
Q Consensus 86 ~~i~v~~~~~~~ 97 (247)
+.|+|.++.++.
T Consensus 84 ~~l~V~~a~~~~ 95 (97)
T 2e5j_A 84 DTLRVALARQQR 95 (97)
T ss_dssp SCCEEEECCCCC
T ss_pred cEEEEEEcCCCC
Confidence 999999987653
No 259
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.73 E-value=9.7e-18 Score=113.98 Aligned_cols=72 Identities=8% Similarity=0.109 Sum_probs=67.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeee
Q 025858 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRT 93 (247)
Q Consensus 16 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~ 93 (247)
-.+..|+|+||++.+||++|+++|.+||+|.++++.. ++|||||+|.+.++|++|++ ++..+.|++|+|+++
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 4578899999999999999999999999999999865 58999999999999999999 788999999999876
No 260
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.73 E-value=1.4e-18 Score=120.45 Aligned_cols=79 Identities=28% Similarity=0.570 Sum_probs=71.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeeecCC
Q 025858 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIPK 96 (247)
Q Consensus 19 ~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~~~~ 96 (247)
++|||+|||.++|+++|+++|++||.|.++.+++++.++.++|||||+|.+.+ |.+|+. ++..++|+.|+|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999988999999999999999 999998 788999999999998765
Q ss_pred CC
Q 025858 97 GS 98 (247)
Q Consensus 97 ~~ 98 (247)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 44
No 261
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.73 E-value=1.8e-18 Score=123.98 Aligned_cols=84 Identities=19% Similarity=0.238 Sum_probs=77.2
Q ss_pred CCCccccEEEcCCCCCCCHHHHHHHHHhcCC---eEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEE
Q 025858 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGK---VLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQV 178 (247)
Q Consensus 102 ~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~---i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l 178 (247)
.....++|||+|||+++|+++|+++|++||. |..|.++.++. |+++|||||+|.+.++|.+|+. +|+..+.|+.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 3456789999999999999999999999988 89999999977 9999999999999999999999 99999999999
Q ss_pred EEeecccCc
Q 025858 179 SLIGWSPVN 187 (247)
Q Consensus 179 ~v~~a~~~~ 187 (247)
+|.++.++.
T Consensus 85 ~V~~a~~~~ 93 (107)
T 2lmi_A 85 EVYEINNED 93 (107)
T ss_dssp CCEECCHHH
T ss_pred EEEECCHHH
Confidence 999987543
No 262
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.73 E-value=1.4e-17 Score=128.11 Aligned_cols=96 Identities=24% Similarity=0.333 Sum_probs=86.3
Q ss_pred ccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeecc
Q 025858 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWS 184 (247)
Q Consensus 105 ~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 184 (247)
+.++|||+|||.++++++|+++|++||.|.++.+++++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46799999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred cCcccccceeEEEehh
Q 025858 185 PVNQLLKGYLFIVYNV 200 (247)
Q Consensus 185 ~~~~~~~~~~~~~~~~ 200 (247)
+.............+.
T Consensus 82 ~~~~~~~~~~l~v~nl 97 (168)
T 1b7f_A 82 PGGESIKDTNLYVTNL 97 (168)
T ss_dssp CCSSTTTTCEEEEESC
T ss_pred CCcccCCCCCEEEeCC
Confidence 8776555544444443
No 263
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=6.3e-18 Score=119.71 Aligned_cols=77 Identities=17% Similarity=0.307 Sum_probs=71.5
Q ss_pred CccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeec
Q 025858 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGW 183 (247)
Q Consensus 104 ~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 183 (247)
...++|||+|||..+++++|+++|++||.|.++++. .++|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 346799999999999999999999999999999997 35789999999999999999999999999999999998
Q ss_pred ccC
Q 025858 184 SPV 186 (247)
Q Consensus 184 ~~~ 186 (247)
.++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 264
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=118.95 Aligned_cols=82 Identities=18% Similarity=0.346 Sum_probs=73.4
Q ss_pred CCCCCCCeEEEcCCCCCC------CHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccC
Q 025858 13 GDGASPGKIFIGGLPKDT------TYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIIN 84 (247)
Q Consensus 13 ~~~~~~~~l~v~nLp~~~------te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~ 84 (247)
.+....++|||+|||..+ |+++|+++|++||.|.++.+++ .+|.++|||||+|.+.++|.+|+. ++..++
T Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 10 EADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp SCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 344567899999999999 7899999999999999999883 478999999999999999999999 788999
Q ss_pred Ce-EEEEeeecCC
Q 025858 85 GK-QVEIKRTIPK 96 (247)
Q Consensus 85 g~-~i~v~~~~~~ 96 (247)
|+ .|+|.++...
T Consensus 88 g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 88 KQHTFRVNLFTDF 100 (105)
T ss_dssp TTCEEEEECSCCC
T ss_pred CCceEEEEEcchH
Confidence 98 9999998643
No 265
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=122.83 Aligned_cols=84 Identities=14% Similarity=0.206 Sum_probs=73.6
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHH----HHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccC
Q 025858 11 HTGDGASPGKIFIGGLPKDTTYATFN----KHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIIN 84 (247)
Q Consensus 11 ~~~~~~~~~~l~v~nLp~~~te~~l~----~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~ 84 (247)
...+..+.++|||+|||.++++++|+ ++|++||.|.+|.+.. ++.++|||||+|.+.++|.+|++ ++..+.
T Consensus 22 ~~~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~ 98 (127)
T 2a3j_A 22 TPPHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQ 98 (127)
T ss_dssp CCCCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCT
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 34455678999999999999999876 6999999999987753 67899999999999999999998 888999
Q ss_pred CeEEEEeeecCCC
Q 025858 85 GKQVEIKRTIPKG 97 (247)
Q Consensus 85 g~~i~v~~~~~~~ 97 (247)
|+.|+|.++....
T Consensus 99 gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 99 GNPLVITFSETPQ 111 (127)
T ss_dssp TSCCEEEECCCCC
T ss_pred CCEEEEEEccCcc
Confidence 9999999987654
No 266
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=5.9e-18 Score=119.85 Aligned_cols=78 Identities=23% Similarity=0.378 Sum_probs=73.1
Q ss_pred ccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeecccC
Q 025858 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWSPV 186 (247)
Q Consensus 107 ~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~ 186 (247)
++|||+|||.++|+++|+++|++||.|.++.++.+ ++|||||+|.+.++|.+|+..||+..+.|+.|+|.++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999877 6889999999999999999999999999999999999886
Q ss_pred ccc
Q 025858 187 NQL 189 (247)
Q Consensus 187 ~~~ 189 (247)
...
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 643
No 267
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=8.5e-18 Score=123.16 Aligned_cols=78 Identities=18% Similarity=0.328 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCe----eEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEE
Q 025858 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDI----TDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEI 90 (247)
Q Consensus 16 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i----~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v 90 (247)
...++|||+|||+++|+++|+++|++||.| .+|.++.++ +|+++|||||+|.+.++|++|++ +++.|+|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 567899999999999999999999999975 689999986 89999999999999999999999 788999999998
Q ss_pred eeec
Q 025858 91 KRTI 94 (247)
Q Consensus 91 ~~~~ 94 (247)
..+.
T Consensus 100 ~~a~ 103 (123)
T 2dha_A 100 FRST 103 (123)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8764
No 268
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.3e-17 Score=114.33 Aligned_cols=79 Identities=22% Similarity=0.424 Sum_probs=72.7
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEee
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIG 182 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 182 (247)
..+.++|||+|||.++++++|+++|++||.|..+.+++ +||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999964 3999999999999999999999999999999999
Q ss_pred cccCccc
Q 025858 183 WSPVNQL 189 (247)
Q Consensus 183 a~~~~~~ 189 (247)
+.++...
T Consensus 78 a~~~~~~ 84 (90)
T 2dnp_A 78 STKGQKK 84 (90)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 9876544
No 269
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3e-17 Score=117.92 Aligned_cols=81 Identities=15% Similarity=0.206 Sum_probs=70.9
Q ss_pred CCCCCCCCeEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--cc--CccCCe
Q 025858 12 TGDGASPGKIFIGGLPKD-TTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DT--HIINGK 86 (247)
Q Consensus 12 ~~~~~~~~~l~v~nLp~~-~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~--~~l~g~ 86 (247)
..+..++++|||+|||.+ +||++|+++|++||.|.++++++ ++|||||+|.+.++|.+|++ ++ ..+.|+
T Consensus 19 ~~~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr 92 (112)
T 1x4f_A 19 DQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGR 92 (112)
T ss_dssp CCSSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSS
T ss_pred cccCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 445667899999999998 99999999999999999999974 36899999999999999998 33 469999
Q ss_pred EEEEeeecCCCC
Q 025858 87 QVEIKRTIPKGS 98 (247)
Q Consensus 87 ~i~v~~~~~~~~ 98 (247)
.|+|.++.....
T Consensus 93 ~l~V~~a~~~~~ 104 (112)
T 1x4f_A 93 CVKVDLSEKYKK 104 (112)
T ss_dssp CCEEEEECSCSS
T ss_pred EEEEEECccccc
Confidence 999999976543
No 270
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.72 E-value=2e-17 Score=132.75 Aligned_cols=85 Identities=25% Similarity=0.371 Sum_probs=79.0
Q ss_pred CccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeec
Q 025858 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGW 183 (247)
Q Consensus 104 ~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 183 (247)
.+.++|||+|||.++|+++|+++|++||.|++|+|++++.+++++|||||+|.+.++|.+|+..+|+..+.|+.+++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCcc
Q 025858 184 SPVNQ 188 (247)
Q Consensus 184 ~~~~~ 188 (247)
.....
T Consensus 93 ~~~~~ 97 (213)
T 4f02_A 93 QRDPS 97 (213)
T ss_dssp CCCTH
T ss_pred ccccc
Confidence 76443
No 271
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.72 E-value=3.5e-17 Score=116.27 Aligned_cols=81 Identities=25% Similarity=0.430 Sum_probs=73.8
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEee
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIG 182 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 182 (247)
..+.++|||+|||..+|+++|+++|++||.|..|.++ ++||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3457899999999999999999999999999999985 45999999999999999999999999999999999
Q ss_pred cccCccccc
Q 025858 183 WSPVNQLLK 191 (247)
Q Consensus 183 a~~~~~~~~ 191 (247)
+.++.....
T Consensus 80 a~~~~~~~~ 88 (103)
T 2dgu_A 80 AKPPDQKRK 88 (103)
T ss_dssp CCCCCCCCC
T ss_pred cCCCcccch
Confidence 988766544
No 272
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.72 E-value=8.8e-18 Score=120.87 Aligned_cols=96 Identities=18% Similarity=0.380 Sum_probs=80.2
Q ss_pred CCeEEEEeeecCCCCCCCCCCccccEEEcCCCCC-CCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHH
Q 025858 84 NGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSS-VSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVD 162 (247)
Q Consensus 84 ~g~~i~v~~~~~~~~~~~~~~~~~~l~v~~l~~~-~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 162 (247)
.|..+.+..+.+.... ......++|||+|||.. +++++|+++|++||.|..|.+ ++|||||+|.+.++|.
T Consensus 6 ~g~~~~~~~s~~~~~~-~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~ 76 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKN-DPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHAR 76 (110)
T ss_dssp CSCCCCCCCCCSCCSC-CCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHH
T ss_pred CCcccccccCCCCCCC-CCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHH
Confidence 4556666665543332 23345689999999999 999999999999999999998 5789999999999999
Q ss_pred HHHHcCCCcccCCcEEEEeecccCcc
Q 025858 163 EMLSKGNMIDMAGTQVSLIGWSPVNQ 188 (247)
Q Consensus 163 ~ai~~l~~~~~~g~~l~v~~a~~~~~ 188 (247)
+|+..||+..+.|+.|+|.++.+...
T Consensus 77 ~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 77 AAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp HHHHHHTTCEETTEECCEEESCCCCS
T ss_pred HHHHHcCCCEECCeEEEEEECCCCCC
Confidence 99999999999999999999985443
No 273
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.72 E-value=3.1e-18 Score=128.12 Aligned_cols=85 Identities=15% Similarity=0.168 Sum_probs=73.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEE
Q 025858 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEI 90 (247)
Q Consensus 12 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v 90 (247)
.......++|||+|||+++||++|+++|++|| |.+|.++.++. ++++|||||+|.+.++|++|++ ++..|+|+.|.|
T Consensus 40 ~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V 117 (139)
T 2hgn_A 40 TVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIEL 117 (139)
T ss_dssp -----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEE
Confidence 34456778999999999999999999999999 77999999984 9999999999999999999998 788999999999
Q ss_pred eeecCCCC
Q 025858 91 KRTIPKGS 98 (247)
Q Consensus 91 ~~~~~~~~ 98 (247)
..+.+...
T Consensus 118 ~~a~~~~~ 125 (139)
T 2hgn_A 118 FLNSTTGA 125 (139)
T ss_dssp EECCCSCC
T ss_pred EECCCCCC
Confidence 98876543
No 274
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.7e-17 Score=112.71 Aligned_cols=78 Identities=22% Similarity=0.517 Sum_probs=71.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEe
Q 025858 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIK 91 (247)
Q Consensus 14 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~ 91 (247)
+..+.++|||+|||.++|+++|+++|++||.|.++.++ +|||||+|.+.++|.+|++ ++..++|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 45678999999999999999999999999999999997 5799999999999999997 7789999999999
Q ss_pred eecCCCCC
Q 025858 92 RTIPKGSG 99 (247)
Q Consensus 92 ~~~~~~~~ 99 (247)
++.+....
T Consensus 76 ~a~~~~~~ 83 (90)
T 2dnq_A 76 ASKNKSKA 83 (90)
T ss_dssp CSSCCCCC
T ss_pred ECCCCCCC
Confidence 99876553
No 275
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.72 E-value=2.6e-17 Score=128.32 Aligned_cols=85 Identities=16% Similarity=0.264 Sum_probs=79.5
Q ss_pred CccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeec
Q 025858 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGW 183 (247)
Q Consensus 104 ~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 183 (247)
...++|||+|||..+++++|+++|++||.|+.|.++.+. ++.++|||||+|.+.++|.+|+..||+..+.|+.|+|.++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456799999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred ccCccc
Q 025858 184 SPVNQL 189 (247)
Q Consensus 184 ~~~~~~ 189 (247)
.+....
T Consensus 165 ~~~~~~ 170 (177)
T 2f3j_A 165 ASQIDL 170 (177)
T ss_dssp SSGGGG
T ss_pred cCCCCC
Confidence 875443
No 276
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.1e-18 Score=121.68 Aligned_cols=89 Identities=18% Similarity=0.260 Sum_probs=74.4
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEE
Q 025858 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQV 88 (247)
Q Consensus 11 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i 88 (247)
......++++|||+|||.++|+++|+++|++||.|.++.+..+..++.++|||||+|.+.++|.+|++ ++..++|+.|
T Consensus 18 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 18 SYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp CCCCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred ccCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 33445577999999999999999999999999998544333333378899999999999999999998 7889999999
Q ss_pred EEeeecCCCCC
Q 025858 89 EIKRTIPKGSG 99 (247)
Q Consensus 89 ~v~~~~~~~~~ 99 (247)
+|.++.+....
T Consensus 98 ~v~~a~~~~~~ 108 (115)
T 2cpx_A 98 VIEFGKNKKQR 108 (115)
T ss_dssp EEEECCCCSCC
T ss_pred EEEEccCCCCC
Confidence 99999876553
No 277
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=9.6e-18 Score=122.87 Aligned_cols=81 Identities=19% Similarity=0.268 Sum_probs=73.7
Q ss_pred CccccEEEcCCCCCCCHHHHHHHHHhcCCe----EEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEE
Q 025858 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKV----LEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVS 179 (247)
Q Consensus 104 ~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i----~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~ 179 (247)
.+..+|||+|||+++|+++|+++|++||.| ..|.|+.+ .+|+++|||||+|.+.++|.+|+.. |+..+.|+.|+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 346799999999999999999999999975 68999998 5899999999999999999999996 99999999999
Q ss_pred EeecccC
Q 025858 180 LIGWSPV 186 (247)
Q Consensus 180 v~~a~~~ 186 (247)
|..+.++
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9887654
No 278
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.71 E-value=2.2e-17 Score=114.22 Aligned_cols=81 Identities=31% Similarity=0.524 Sum_probs=65.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHhccCccCCeEEEEe
Q 025858 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIK 91 (247)
Q Consensus 12 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~l~g~~i~v~ 91 (247)
.....+.++|||+|||.++||++|+++|++||.|.+++++++ ++|||||+|.+.++|+++......+.|+.|.|.
T Consensus 5 ~~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 5 HHHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCGEDLIIKGISVHIS 79 (89)
T ss_dssp ------CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTTCEEEETTEEEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcCCCcccCCEEEEEE
Confidence 345667899999999999999999999999999999999874 789999999999999965445456789999999
Q ss_pred eecCCC
Q 025858 92 RTIPKG 97 (247)
Q Consensus 92 ~~~~~~ 97 (247)
++.++.
T Consensus 80 ~a~~k~ 85 (89)
T 3d2w_A 80 NAEPKH 85 (89)
T ss_dssp ECC---
T ss_pred EcCCCC
Confidence 987654
No 279
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1e-16 Score=114.89 Aligned_cols=78 Identities=17% Similarity=0.415 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCC-----eE
Q 025858 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIING-----KQ 87 (247)
Q Consensus 15 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g-----~~ 87 (247)
....++|||+|||.++|+++|+++|++||.|.++.++.+ |||||+|.+.++|++|++ ++..++| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 456889999999999999999999999999999999876 799999999999999998 7778999 99
Q ss_pred EEEeeecCCCCC
Q 025858 88 VEIKRTIPKGSG 99 (247)
Q Consensus 88 i~v~~~~~~~~~ 99 (247)
|+|.++.+....
T Consensus 85 i~V~~a~~~~~~ 96 (108)
T 1x4c_A 85 IRVKVDGPRSPS 96 (108)
T ss_dssp EEEEESSCCSCC
T ss_pred EEEEeCCCCCCC
Confidence 999999876543
No 280
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.9e-17 Score=115.12 Aligned_cols=81 Identities=19% Similarity=0.245 Sum_probs=73.1
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEE-EEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEe
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ-IIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLI 181 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~-i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 181 (247)
....++|||+|||..+++++|+++|++||.|..++ ++.++.++ .|||+|.+.++|.+|+..|||..+.|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34578999999999999999999999999999994 87776543 39999999999999999999999999999999
Q ss_pred ecccCc
Q 025858 182 GWSPVN 187 (247)
Q Consensus 182 ~a~~~~ 187 (247)
++.++.
T Consensus 88 ~a~~~~ 93 (96)
T 2e44_A 88 YIPDEM 93 (96)
T ss_dssp ECCCCC
T ss_pred EcCccc
Confidence 998873
No 281
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=7.9e-17 Score=113.20 Aligned_cols=81 Identities=19% Similarity=0.264 Sum_probs=72.8
Q ss_pred CCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEe
Q 025858 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLI 181 (247)
Q Consensus 102 ~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 181 (247)
...+.++|||+|| ++++++|+++|++||.|..|.+. .++|||||+|.+.++|.+|+..||+..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3446789999996 89999999999999999999983 468899999999999999999999999999999999
Q ss_pred ecccCcccc
Q 025858 182 GWSPVNQLL 190 (247)
Q Consensus 182 ~a~~~~~~~ 190 (247)
++.++....
T Consensus 83 ~a~~~~~~~ 91 (97)
T 1x5p_A 83 IARKQPMLD 91 (97)
T ss_dssp CCSSCCCCC
T ss_pred ECCCCCCCC
Confidence 998876543
No 282
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.4e-17 Score=116.80 Aligned_cols=79 Identities=25% Similarity=0.429 Sum_probs=71.2
Q ss_pred CCccccEEEcCCCC-CCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEe
Q 025858 103 DFKTKKIFVGGIPS-SVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLI 181 (247)
Q Consensus 103 ~~~~~~l~v~~l~~-~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 181 (247)
..+.++|||+|||. .+++++|+++|++||.|..+.+. +|||||+|.+.++|.+|+..||+..+.|+.|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45678999999998 99999999999999999999983 6799999999999999999999999999999999
Q ss_pred ecccCccc
Q 025858 182 GWSPVNQL 189 (247)
Q Consensus 182 ~a~~~~~~ 189 (247)
++.++...
T Consensus 79 ~a~~~~~~ 86 (96)
T 2kvi_A 79 VSSSNARP 86 (96)
T ss_dssp EEECCCC-
T ss_pred EcCcCCCC
Confidence 99876543
No 283
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.6e-17 Score=118.69 Aligned_cols=79 Identities=11% Similarity=0.033 Sum_probs=72.2
Q ss_pred CccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeec
Q 025858 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGW 183 (247)
Q Consensus 104 ~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 183 (247)
...++|||+|||..+++++|+++|++||.|..|.+++ ++|||||+|.+.++|.+|+..|||..+.|+.|.|.|+
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3567999999999999999999999999999998864 5789999999999999999999999999999999998
Q ss_pred ccCcc
Q 025858 184 SPVNQ 188 (247)
Q Consensus 184 ~~~~~ 188 (247)
.....
T Consensus 82 ~~~~~ 86 (111)
T 1whx_A 82 PIGVF 86 (111)
T ss_dssp ETTTT
T ss_pred CCCcc
Confidence 76443
No 284
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=3.3e-17 Score=114.87 Aligned_cols=83 Identities=18% Similarity=0.274 Sum_probs=72.8
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEE
Q 025858 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQV 88 (247)
Q Consensus 11 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i 88 (247)
......+.++|||+|||.++|+++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|++ ++..++|+.|
T Consensus 9 ~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 83 (96)
T 1fjc_A 9 TSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 83 (96)
T ss_dssp TTSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 44555678999999999999999999999999988765 2378899999999999999999998 7779999999
Q ss_pred EEeeecCCCC
Q 025858 89 EIKRTIPKGS 98 (247)
Q Consensus 89 ~v~~~~~~~~ 98 (247)
+|.++.+...
T Consensus 84 ~v~~a~~~~~ 93 (96)
T 1fjc_A 84 SLYYTGEKGG 93 (96)
T ss_dssp EEEECSSSCC
T ss_pred EEEEcCCCCC
Confidence 9999876543
No 285
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.2e-16 Score=111.05 Aligned_cols=80 Identities=18% Similarity=0.391 Sum_probs=71.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEE
Q 025858 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVE 89 (247)
Q Consensus 12 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~ 89 (247)
.....+.++|||+|||.++|+++|+++|++||.|.++.+++ +||||+|.+.++|.+|++ ++..++|+.|+
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 75 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMH 75 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 34566789999999999999999999999999999999974 399999999999999997 78899999999
Q ss_pred EeeecCCCCC
Q 025858 90 IKRTIPKGSG 99 (247)
Q Consensus 90 v~~~~~~~~~ 99 (247)
|.++.+....
T Consensus 76 V~~a~~~~~~ 85 (92)
T 2dgt_A 76 VQLSTSRLRT 85 (92)
T ss_dssp EEESSCCCSC
T ss_pred EEEccCCCCC
Confidence 9999876543
No 286
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=6e-17 Score=113.16 Aligned_cols=81 Identities=19% Similarity=0.342 Sum_probs=71.8
Q ss_pred CccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeec
Q 025858 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGW 183 (247)
Q Consensus 104 ~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 183 (247)
...++|||+|||.++++++|+++|++||.|.+| +.++.++. ||||+|.+.++|.+|+. ||+..+.|+.|.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 346799999999999999999999999999987 66666554 99999999999999999 9999999999999998
Q ss_pred ccCcccc
Q 025858 184 SPVNQLL 190 (247)
Q Consensus 184 ~~~~~~~ 190 (247)
.++....
T Consensus 80 ~~~~~~~ 86 (94)
T 2e5g_A 80 EQKEFQS 86 (94)
T ss_dssp CCSCCCC
T ss_pred CcCCCCC
Confidence 7665543
No 287
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.70 E-value=5.3e-17 Score=116.45 Aligned_cols=79 Identities=20% Similarity=0.443 Sum_probs=70.1
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEE
Q 025858 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQV 88 (247)
Q Consensus 11 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i 88 (247)
......+.++|||+|||.++|+++|+++|++||.|.++.++ +|||||+|.+.++|.+|++ ++..++|+.|
T Consensus 24 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 95 (108)
T 2jvo_A 24 RQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPL 95 (108)
T ss_dssp ----CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred ccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 45556788999999999999999999999999999999997 6899999999999999998 8889999999
Q ss_pred EEeeecCCC
Q 025858 89 EIKRTIPKG 97 (247)
Q Consensus 89 ~v~~~~~~~ 97 (247)
.|.++.+..
T Consensus 96 ~V~~a~~~~ 104 (108)
T 2jvo_A 96 EVVYSKLPA 104 (108)
T ss_dssp EEESCSCCC
T ss_pred EEEEecCCC
Confidence 999987654
No 288
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=6.7e-17 Score=110.63 Aligned_cols=76 Identities=22% Similarity=0.535 Sum_probs=68.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh---ccCccCCeEE
Q 025858 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE---DTHIINGKQV 88 (247)
Q Consensus 12 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~---~~~~l~g~~i 88 (247)
+.++.+.++|||+|||.++|+++|+++|++||.|.++.++++ +|||||+|.+.++|.+|++ ++..++|+.|
T Consensus 6 ~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l 79 (85)
T 2ytc_A 6 SGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRL 79 (85)
T ss_dssp CCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEEC
T ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEE
Confidence 344567899999999999999999999999999999999864 6899999999999999998 5679999999
Q ss_pred EEeee
Q 025858 89 EIKRT 93 (247)
Q Consensus 89 ~v~~~ 93 (247)
+|.++
T Consensus 80 ~v~~a 84 (85)
T 2ytc_A 80 NVKWG 84 (85)
T ss_dssp CEEEC
T ss_pred EEEec
Confidence 99986
No 289
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.70 E-value=7.8e-17 Score=127.05 Aligned_cols=87 Identities=36% Similarity=0.654 Sum_probs=75.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEEe
Q 025858 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIK 91 (247)
Q Consensus 13 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v~ 91 (247)
......++|||+|||.++|+++|+++|+.||.|.++.++.++.++.++|||||+|.+.++|.+|+. +++.++|+.|.|.
T Consensus 99 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~ 178 (196)
T 1l3k_A 99 GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR 178 (196)
T ss_dssp ----CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEE
T ss_pred ccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEE
Confidence 344567899999999999999999999999999999999999899999999999999999999998 7889999999999
Q ss_pred eecCCCCC
Q 025858 92 RTIPKGSG 99 (247)
Q Consensus 92 ~~~~~~~~ 99 (247)
++.++...
T Consensus 179 ~a~~k~~~ 186 (196)
T 1l3k_A 179 KALSKQEM 186 (196)
T ss_dssp ECC-----
T ss_pred ecCChhHh
Confidence 99876553
No 290
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.70 E-value=1.3e-17 Score=113.35 Aligned_cols=71 Identities=21% Similarity=0.448 Sum_probs=64.7
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCe-EE
Q 025858 18 PGKIFIGGLPKDT------TYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGK-QV 88 (247)
Q Consensus 18 ~~~l~v~nLp~~~------te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~-~i 88 (247)
+++|||+|||.++ |+++|+++|++||.|.++.+++ .+|.++|||||+|.+.++|.+|++ ++..++|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4789999999999 7899999999999999999873 478999999999999999999998 78899998 77
Q ss_pred EE
Q 025858 89 EI 90 (247)
Q Consensus 89 ~v 90 (247)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 65
No 291
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-17 Score=120.08 Aligned_cols=81 Identities=17% Similarity=0.235 Sum_probs=71.7
Q ss_pred CCccccEEEcCCCCC-CCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCC--cccCCcEEE
Q 025858 103 DFKTKKIFVGGIPSS-VSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNM--IDMAGTQVS 179 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~-~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~--~~~~g~~l~ 179 (247)
..+.++|||+|||++ +++++|+++|++||.|.+|.+++ ++|||||+|.+.++|.+|+..||+ ..+.|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 446789999999998 99999999999999999999964 478999999999999999998764 569999999
Q ss_pred EeecccCccc
Q 025858 180 LIGWSPVNQL 189 (247)
Q Consensus 180 v~~a~~~~~~ 189 (247)
|.++..+...
T Consensus 96 V~~a~~~~~~ 105 (112)
T 1x4f_A 96 VDLSEKYKKL 105 (112)
T ss_dssp EEEECSCSSS
T ss_pred EEECcccccc
Confidence 9999775543
No 292
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.4e-16 Score=111.07 Aligned_cols=82 Identities=13% Similarity=0.331 Sum_probs=72.1
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccC--CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccC
Q 025858 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKY--GDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIIN 84 (247)
Q Consensus 9 ~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~--G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~ 84 (247)
........+.++|||+|||.++|+++|+++|++| |.|.++.+. +|||||+|.+.++|.+|++ ++..++
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (99)
T 2cpd_A 6 SGDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLD 77 (99)
T ss_dssp CCCCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEET
T ss_pred cccccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 3445556678999999999999999999999999 899888764 5799999999999999998 788999
Q ss_pred CeEEEEeeecCCCC
Q 025858 85 GKQVEIKRTIPKGS 98 (247)
Q Consensus 85 g~~i~v~~~~~~~~ 98 (247)
|+.|.|.++.+...
T Consensus 78 g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 78 GSPIEVTLAKPVDK 91 (99)
T ss_dssp TEEEEEECCCCCCC
T ss_pred CcEEEEEECCCCCC
Confidence 99999999987654
No 293
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=3e-17 Score=118.86 Aligned_cols=80 Identities=21% Similarity=0.410 Sum_probs=71.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCC---CCcceEEEEEecCHHHHHHHHhccCccCCeEEEE
Q 025858 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYT---GQPRGFGFITYADPSVVDKVIEDTHIINGKQVEI 90 (247)
Q Consensus 14 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~~~~l~g~~i~v 90 (247)
....+++|||+|||.++|+++|+++|++||.|. +.++.++.+ |.++|||||+|.+.++|++|++..+.++|+.+.+
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~ 82 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLC 82 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEE
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEe
Confidence 345679999999999999999999999999999 888888766 7999999999999999999999777789999888
Q ss_pred eeec
Q 025858 91 KRTI 94 (247)
Q Consensus 91 ~~~~ 94 (247)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 7543
No 294
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.70 E-value=3.4e-17 Score=132.88 Aligned_cols=79 Identities=19% Similarity=0.338 Sum_probs=73.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCC--CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEee
Q 025858 17 SPGKIFIGGLPKDTTYATFNKHFGKYG--DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKR 92 (247)
Q Consensus 17 ~~~~l~v~nLp~~~te~~l~~~f~~~G--~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~ 92 (247)
..++|||+|||.++||++|+++|++|| .|.+|+|++++.+++++|||||+|.+.++|.+|++ +++.|+|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 99999999999999999999999999999999998 77899999999999
Q ss_pred ecC
Q 025858 93 TIP 95 (247)
Q Consensus 93 ~~~ 95 (247)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 754
No 295
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.70 E-value=4e-17 Score=118.34 Aligned_cols=79 Identities=15% Similarity=0.193 Sum_probs=71.8
Q ss_pred ccEEEcCC----CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcC----HHH----HHHHHH--cCCCcc
Q 025858 107 KKIFVGGI----PSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDS----EEV----VDEMLS--KGNMID 172 (247)
Q Consensus 107 ~~l~v~~l----~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~~~----a~~ai~--~l~~~~ 172 (247)
.+|||+|| |+.+++++|+++|++||+|.++.++.|+.||.++|||||+|.+ .++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999999999999999999996 333 889988 799999
Q ss_pred cCCcEEEEeeccc
Q 025858 173 MAGTQVSLIGWSP 185 (247)
Q Consensus 173 ~~g~~l~v~~a~~ 185 (247)
+.|+.|+|..-..
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999987554
No 296
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.70 E-value=1.6e-17 Score=122.01 Aligned_cols=82 Identities=21% Similarity=0.340 Sum_probs=73.9
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeE--EEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVL--EHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
....++|||+|||+++|+++|+++|++| .|. +|+|++++. |+++|||||+|.+.++|.+|+.. ++..+.|+.|.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 3456789999999999999999999999 677 899999977 99999999999999999999985 789999999999
Q ss_pred eecccCc
Q 025858 181 IGWSPVN 187 (247)
Q Consensus 181 ~~a~~~~ 187 (247)
..+.+++
T Consensus 116 ~~a~~~e 122 (126)
T 2hgm_A 116 FKSSQEE 122 (126)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 8886543
No 297
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.70 E-value=1.2e-16 Score=113.43 Aligned_cols=79 Identities=19% Similarity=0.374 Sum_probs=70.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEE
Q 025858 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEI 90 (247)
Q Consensus 13 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v 90 (247)
....+.++|||+|||.++|+++|+++|++||.|.++.++ ++||||+|.+.++|.+|++ ++..++|+.|.|
T Consensus 6 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 77 (103)
T 2dgu_A 6 SGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEI 77 (103)
T ss_dssp CCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEE
Confidence 344567999999999999999999999999999999886 3599999999999999998 788999999999
Q ss_pred eeecCCCCC
Q 025858 91 KRTIPKGSG 99 (247)
Q Consensus 91 ~~~~~~~~~ 99 (247)
.++.+....
T Consensus 78 ~~a~~~~~~ 86 (103)
T 2dgu_A 78 VFAKPPDQK 86 (103)
T ss_dssp EECCCCCCC
T ss_pred EEcCCCccc
Confidence 999876554
No 298
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.4e-17 Score=114.93 Aligned_cols=81 Identities=12% Similarity=0.272 Sum_probs=71.5
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCC-eEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCC-cccCCcEEEE
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGK-VLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNM-IDMAGTQVSL 180 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~-~~~~g~~l~v 180 (247)
....++|||+|||.++++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+..||| ..+.|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 345789999999999999999999999999 6655552 478999999999999999999999 9999999999
Q ss_pred eecccCcccc
Q 025858 181 IGWSPVNQLL 190 (247)
Q Consensus 181 ~~a~~~~~~~ 190 (247)
.++.++....
T Consensus 78 ~~a~~~~~~~ 87 (93)
T 2cqh_A 78 DYSVSKKLRS 87 (93)
T ss_dssp EECCCCCCCC
T ss_pred EEccCccccC
Confidence 9998876543
No 299
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.70 E-value=1.2e-16 Score=121.86 Aligned_cols=80 Identities=14% Similarity=0.114 Sum_probs=72.2
Q ss_pred ccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCC--cEEEEee
Q 025858 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAG--TQVSLIG 182 (247)
Q Consensus 105 ~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g--~~l~v~~ 182 (247)
...+|||+||++.+|+++|+++|++||.|++|.++.+. ++|||||+|.+.++|.+|++.|||..|.| +.|+|.+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 45679999999999999999999999999999987542 57899999999999999999999999966 9999999
Q ss_pred cccCcc
Q 025858 183 WSPVNQ 188 (247)
Q Consensus 183 a~~~~~ 188 (247)
++++..
T Consensus 121 Ak~~~l 126 (164)
T 1sjr_A 121 SKLTSL 126 (164)
T ss_dssp CSSSSC
T ss_pred ecCCcc
Confidence 998643
No 300
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.4e-17 Score=115.52 Aligned_cols=80 Identities=15% Similarity=0.354 Sum_probs=72.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEe
Q 025858 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIK 91 (247)
Q Consensus 14 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~ 91 (247)
+....++|||+|||.++|+++|+++|++||.|.++.++.+ +|||||+|.+.++|.+|++ ++..++|+.|+|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4567889999999999999999999999999999999876 6899999999999999997 7889999999999
Q ss_pred eecCCCCC
Q 025858 92 RTIPKGSG 99 (247)
Q Consensus 92 ~~~~~~~~ 99 (247)
++.+....
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4g_A 95 WGKESPDM 102 (109)
T ss_dssp CCCCCCSS
T ss_pred ecCCCCCC
Confidence 99876543
No 301
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.69 E-value=1.2e-16 Score=112.25 Aligned_cols=80 Identities=25% Similarity=0.472 Sum_probs=68.4
Q ss_pred CCCCCCCCCCCeEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCC
Q 025858 9 NPHTGDGASPGKIFIGGLPK-DTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIING 85 (247)
Q Consensus 9 ~~~~~~~~~~~~l~v~nLp~-~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g 85 (247)
.+......++++|||+|||. ++|+++|+++|++||.|.++.+. +|||||+|.+.++|.+|++ ++..++|
T Consensus 13 ~~~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (97)
T 2xnq_A 13 GLVPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFG 84 (97)
T ss_dssp ------CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETT
T ss_pred ccccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34455666889999999998 99999999999999999999883 6899999999999999998 7889999
Q ss_pred eEEEEeeecCC
Q 025858 86 KQVEIKRTIPK 96 (247)
Q Consensus 86 ~~i~v~~~~~~ 96 (247)
+.|+|.++.+.
T Consensus 85 ~~l~V~~a~~~ 95 (97)
T 2xnq_A 85 KKLILEVSSSN 95 (97)
T ss_dssp EECEEEECCCC
T ss_pred EEEEEEecCCC
Confidence 99999998654
No 302
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=5.5e-17 Score=114.79 Aligned_cols=76 Identities=20% Similarity=0.255 Sum_probs=69.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEe
Q 025858 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIK 91 (247)
Q Consensus 14 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~ 91 (247)
.+...++|||+|||.++|+++|+++|++||.|.++++. .++|||||+|.+.++|.+|+. ++..++|+.|+|.
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34457899999999999999999999999999999997 357999999999999999997 7889999999999
Q ss_pred eecC
Q 025858 92 RTIP 95 (247)
Q Consensus 92 ~~~~ 95 (247)
++.+
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 9865
No 303
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.69 E-value=1.8e-16 Score=125.24 Aligned_cols=115 Identities=22% Similarity=0.379 Sum_probs=89.9
Q ss_pred CHHHHHHHHhcc--C--ccCCeEEEEeeecCCCCCCC-----CCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEE
Q 025858 69 DPSVVDKVIEDT--H--IINGKQVEIKRTIPKGSGQS-----KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQII 139 (247)
Q Consensus 69 ~~~~a~~a~~~~--~--~l~g~~i~v~~~~~~~~~~~-----~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~ 139 (247)
+.+.+..|+... . .+.+....+......+.... .....++|||+|||.++|+++|+++|++||.|..|+++
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 667778888733 2 44554445555422221111 23356899999999999999999999999999999999
Q ss_pred ecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeeccc
Q 025858 140 RDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWSP 185 (247)
Q Consensus 140 ~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 185 (247)
++. ++.++|||||+|.+.++|.+|+..++ ..+.|+.|.|.++..
T Consensus 143 ~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 143 RTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp ECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred ECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 985 48899999999999999999998755 589999999998764
No 304
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=1.6e-18 Score=125.91 Aligned_cols=87 Identities=22% Similarity=0.399 Sum_probs=79.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeE--------EEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCc
Q 025858 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITD--------SVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHI 82 (247)
Q Consensus 13 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~--------i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~ 82 (247)
.+..+.++|||+|||.++|+++|+++|++||.|.+ +.++.++.++.++|||||+|.+.++|.+|++ ++..
T Consensus 2 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (116)
T 2lcw_A 2 QDNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 81 (116)
Confidence 34567899999999999999999999999999998 9999998889999999999999999999998 7889
Q ss_pred cCCeEEEEeeecCCCCC
Q 025858 83 INGKQVEIKRTIPKGSG 99 (247)
Q Consensus 83 l~g~~i~v~~~~~~~~~ 99 (247)
++|+.|+|.++.+....
T Consensus 82 ~~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 82 FSGNPIKVSFATRRADF 98 (116)
Confidence 99999999999876543
No 305
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.69 E-value=2.6e-17 Score=115.52 Aligned_cols=81 Identities=16% Similarity=0.333 Sum_probs=72.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeE
Q 025858 14 DGASPGKIFIGGLPKDTTYATFN----KHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQ 87 (247)
Q Consensus 14 ~~~~~~~l~v~nLp~~~te~~l~----~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~ 87 (247)
+..++++|||+|||.++|+++|+ ++|++||.|.++.+.+ ++.++|||||+|.+.++|.+|++ ++..++|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 45678999999999999999999 9999999999998873 56788999999999999999998 788999999
Q ss_pred EEEeeecCCC
Q 025858 88 VEIKRTIPKG 97 (247)
Q Consensus 88 i~v~~~~~~~ 97 (247)
|+|.++.+..
T Consensus 81 l~v~~a~~~~ 90 (97)
T 1nu4_A 81 MRIQYAKTDS 90 (97)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEccCCC
Confidence 9999987654
No 306
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.1e-17 Score=111.66 Aligned_cols=79 Identities=30% Similarity=0.554 Sum_probs=70.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHhccCccCCeEEEEeeecC
Q 025858 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIP 95 (247)
Q Consensus 16 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~l~g~~i~v~~~~~ 95 (247)
..+++|||+|||.++|+++|+++|++||.|.+++++.+ ++|||||+|.+.++|++|......+.|+.|.|.++.+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEP 77 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCC
Confidence 46799999999999999999999999999999999764 6899999999999999876666678999999999887
Q ss_pred CCCC
Q 025858 96 KGSG 99 (247)
Q Consensus 96 ~~~~ 99 (247)
+...
T Consensus 78 ~~~~ 81 (88)
T 1wf0_A 78 KHNS 81 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 307
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.69 E-value=4.4e-17 Score=117.18 Aligned_cols=79 Identities=14% Similarity=0.214 Sum_probs=69.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEE
Q 025858 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYG-DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEI 90 (247)
Q Consensus 14 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G-~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v 90 (247)
.+...++|||+|||+++|+++|+++|++|| .|..+.+.. +.++|||||+|.+.++|++|++ ++..++|+.|+|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 344678999999999999999999999999 899988853 3478999999999999999997 888999999999
Q ss_pred eeecCC
Q 025858 91 KRTIPK 96 (247)
Q Consensus 91 ~~~~~~ 96 (247)
.++...
T Consensus 100 ~~a~~~ 105 (111)
T 2jvr_A 100 ERDDNP 105 (111)
T ss_dssp EESCC-
T ss_pred EECCCC
Confidence 998654
No 308
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.68 E-value=2.9e-16 Score=112.83 Aligned_cols=77 Identities=17% Similarity=0.442 Sum_probs=69.1
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEE
Q 025858 14 DGASPGKIFIGGLPKD-TTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEI 90 (247)
Q Consensus 14 ~~~~~~~l~v~nLp~~-~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v 90 (247)
.....++|||+|||.+ +|+++|+++|++||.|.++.+ ++|||||+|.+.++|++|++ ++..++|+.|+|
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3345689999999999 999999999999999999988 46899999999999999997 788999999999
Q ss_pred eeecCCCC
Q 025858 91 KRTIPKGS 98 (247)
Q Consensus 91 ~~~~~~~~ 98 (247)
.++.+...
T Consensus 95 ~~a~~~~~ 102 (110)
T 1wf1_A 95 NMAGEPKP 102 (110)
T ss_dssp EESCCCCS
T ss_pred EECCCCCC
Confidence 99875443
No 309
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.68 E-value=2.9e-16 Score=120.29 Aligned_cols=82 Identities=20% Similarity=0.440 Sum_probs=77.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEE
Q 025858 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEI 90 (247)
Q Consensus 13 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v 90 (247)
....+.++|||+|||.++|+++|+++|++||.|.++.++.++.++.++|+|||+|.+.++|.+|++ ++..++|+.|+|
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Confidence 455678899999999999999999999999999999999998899999999999999999999998 888999999999
Q ss_pred eeec
Q 025858 91 KRTI 94 (247)
Q Consensus 91 ~~~~ 94 (247)
.++.
T Consensus 162 ~~a~ 165 (166)
T 3md3_A 162 NWAA 165 (166)
T ss_dssp EESC
T ss_pred EecC
Confidence 9975
No 310
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.8e-17 Score=116.18 Aligned_cols=80 Identities=19% Similarity=0.233 Sum_probs=70.6
Q ss_pred CCccccEEE--cCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCccc-----CC
Q 025858 103 DFKTKKIFV--GGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDM-----AG 175 (247)
Q Consensus 103 ~~~~~~l~v--~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~-----~g 175 (247)
..+.++||| +||+..+++++|+++|++||.|.+|.++. .+|||||+|.+.++|.+|+..|||..+ .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 345778999 77999999999999999999999998853 378999999999999999999999988 68
Q ss_pred cEEEEeecccCcc
Q 025858 176 TQVSLIGWSPVNQ 188 (247)
Q Consensus 176 ~~l~v~~a~~~~~ 188 (247)
+.|.|.++...+.
T Consensus 96 ~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 96 ITLYLNFVEKVQW 108 (114)
T ss_dssp EECEEEEESCCCC
T ss_pred cEEEEEecccCcc
Confidence 8999999876444
No 311
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=110.02 Aligned_cols=78 Identities=17% Similarity=0.391 Sum_probs=70.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEE
Q 025858 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEI 90 (247)
Q Consensus 13 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v 90 (247)
....+.++|||+|||.++|+++|+++|++||.|.++.+++ +||||+|.+.++|++|++ ++..++|+.|+|
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3456788999999999999999999999999999999974 389999999999999998 788999999999
Q ss_pred eeecCCCC
Q 025858 91 KRTIPKGS 98 (247)
Q Consensus 91 ~~~~~~~~ 98 (247)
.++.+...
T Consensus 76 ~~a~~~~~ 83 (90)
T 2dnp_A 76 ELSTKGQK 83 (90)
T ss_dssp EESCCCCC
T ss_pred EECCCCCC
Confidence 99987644
No 312
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5.1e-16 Score=109.03 Aligned_cols=83 Identities=17% Similarity=0.299 Sum_probs=72.3
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCe
Q 025858 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGK 86 (247)
Q Consensus 9 ~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~ 86 (247)
.+......+.++|||+|| ++|+++|+++|++||.|.++.+. .++|||||+|.+.++|.+|+. ++..++|+
T Consensus 6 ~~~~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 77 (97)
T 1x5p_A 6 SGERRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESV 77 (97)
T ss_dssp SSCCCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred CCccCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 344455667899999996 99999999999999999999884 467899999999999999997 77899999
Q ss_pred EEEEeeecCCCCC
Q 025858 87 QVEIKRTIPKGSG 99 (247)
Q Consensus 87 ~i~v~~~~~~~~~ 99 (247)
.|.|.++.+....
T Consensus 78 ~l~v~~a~~~~~~ 90 (97)
T 1x5p_A 78 QLKVNIARKQPML 90 (97)
T ss_dssp EEEEECCSSCCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999876553
No 313
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=111.84 Aligned_cols=80 Identities=11% Similarity=0.206 Sum_probs=70.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEE-EEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEE
Q 025858 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDS-VIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEI 90 (247)
Q Consensus 14 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i-~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v 90 (247)
.....++|||+|||.++|+++|+++|++||.|.++ .++.++.+ |.|||+|.+.++|.+|++ ++..++|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 86 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKV 86 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34567899999999999999999999999999999 47777644 339999999999999998 888999999999
Q ss_pred eeecCCC
Q 025858 91 KRTIPKG 97 (247)
Q Consensus 91 ~~~~~~~ 97 (247)
.++.+..
T Consensus 87 ~~a~~~~ 93 (96)
T 2e44_A 87 AYIPDEM 93 (96)
T ss_dssp EECCCCC
T ss_pred EEcCccc
Confidence 9998763
No 314
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.8e-16 Score=109.71 Aligned_cols=79 Identities=18% Similarity=0.432 Sum_probs=69.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEEeee
Q 025858 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRT 93 (247)
Q Consensus 15 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v~~~ 93 (247)
....++|||+|||.++|+++|+++|++||.|.+| +.++.++. ||||+|.+.++|.+|++ +++.++|+.|.|.++
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPR 79 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCS
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEEC
Confidence 3466899999999999999999999999999987 56655555 99999999999999999 788999999999988
Q ss_pred cCCCC
Q 025858 94 IPKGS 98 (247)
Q Consensus 94 ~~~~~ 98 (247)
.+...
T Consensus 80 ~~~~~ 84 (94)
T 2e5g_A 80 EQKEF 84 (94)
T ss_dssp CCSCC
T ss_pred CcCCC
Confidence 65544
No 315
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.68 E-value=1.1e-16 Score=124.85 Aligned_cols=82 Identities=15% Similarity=0.317 Sum_probs=76.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEe
Q 025858 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIK 91 (247)
Q Consensus 14 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~ 91 (247)
.....++|||+|||.++|+++|+++|++||.|.++.++.++ ++.++|||||+|.+.++|.+|++ ++..++|+.|.|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998 89999999999999999999998 7889999999999
Q ss_pred eecCC
Q 025858 92 RTIPK 96 (247)
Q Consensus 92 ~~~~~ 96 (247)
++.+.
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 98754
No 316
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.68 E-value=9.1e-17 Score=114.49 Aligned_cols=83 Identities=20% Similarity=0.101 Sum_probs=73.8
Q ss_pred CccccEEEcCCCC-----CCCHHHHHHHHHhcCCeEEEEEEecCCC-CCceeEEEEEEcCHHHHHHHHHcCCCcccCCcE
Q 025858 104 FKTKKIFVGGIPS-----SVSEDELKNFFSKYGKVLEHQIIRDHET-NRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQ 177 (247)
Q Consensus 104 ~~~~~l~v~~l~~-----~~t~~~l~~~f~~~G~i~~v~i~~~~~~-~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~ 177 (247)
.++++|+|.||.. +-++++|+++|++||.|.++.+++++.+ +.++|+|||+|.+.++|.+|+..|||+.+.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4578999999963 2378999999999999999999998654 689999999999999999999999999999999
Q ss_pred EEEeecccC
Q 025858 178 VSLIGWSPV 186 (247)
Q Consensus 178 l~v~~a~~~ 186 (247)
|.|.++.+.
T Consensus 86 i~v~~a~~~ 94 (105)
T 2pe8_A 86 VKACFYNLD 94 (105)
T ss_dssp CEEEECCHH
T ss_pred EEEEEcCHH
Confidence 999998763
No 317
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=111.50 Aligned_cols=78 Identities=23% Similarity=0.445 Sum_probs=68.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCC-eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--cc-CccCCeEEEE
Q 025858 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGD-ITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DT-HIINGKQVEI 90 (247)
Q Consensus 15 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~-i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~-~~l~g~~i~v 90 (247)
+.+.++|||+|||.++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++|++ ++ ..++|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 456789999999999999999999999999 6666553 46899999999999999998 77 8899999999
Q ss_pred eeecCCCCC
Q 025858 91 KRTIPKGSG 99 (247)
Q Consensus 91 ~~~~~~~~~ 99 (247)
.++.+....
T Consensus 78 ~~a~~~~~~ 86 (93)
T 2cqh_A 78 DYSVSKKLR 86 (93)
T ss_dssp EECCCCCCC
T ss_pred EEccCcccc
Confidence 999876553
No 318
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.68 E-value=1.2e-16 Score=110.50 Aligned_cols=79 Identities=27% Similarity=0.535 Sum_probs=63.2
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEee
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIG 182 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~ 182 (247)
..+..+|||+|||+++|+++|+++|++||.|.+|+++++ ++|||||+|.+.++|.++.. ....+.|+.|.|.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~--~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG--EDLIIKGISVHISN 80 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTT--CEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcC--CCcccCCEEEEEEE
Confidence 446789999999999999999999999999999999875 78999999999999984322 13446799999999
Q ss_pred cccCcc
Q 025858 183 WSPVNQ 188 (247)
Q Consensus 183 a~~~~~ 188 (247)
+.++..
T Consensus 81 a~~k~~ 86 (89)
T 3d2w_A 81 AEPKHN 86 (89)
T ss_dssp CC----
T ss_pred cCCCCc
Confidence 987654
No 319
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=115.97 Aligned_cols=77 Identities=23% Similarity=0.523 Sum_probs=66.7
Q ss_pred CccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHET---NRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 104 ~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
...++|||+|||.++++++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|.+|++.|+ .+.|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4578999999999999999999999999999 888888777 7999999999999999999999883 256666665
Q ss_pred eec
Q 025858 181 IGW 183 (247)
Q Consensus 181 ~~a 183 (247)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 543
No 320
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.67 E-value=8.3e-17 Score=111.04 Aligned_cols=76 Identities=13% Similarity=0.192 Sum_probs=70.4
Q ss_pred ccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeecc
Q 025858 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWS 184 (247)
Q Consensus 105 ~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 184 (247)
..++|||+|||.++++++|+++|++| .|.++++. .++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46799999999999999999999999 99999884 478999999999999999999999999999999999986
Q ss_pred cCc
Q 025858 185 PVN 187 (247)
Q Consensus 185 ~~~ 187 (247)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 644
No 321
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.67 E-value=1.5e-16 Score=120.72 Aligned_cols=81 Identities=21% Similarity=0.513 Sum_probs=73.6
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEE
Q 025858 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQV 88 (247)
Q Consensus 11 ~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i 88 (247)
........++|||+|||.++|+++|+++|++||.|.+++++++ ++|||||+|.+.++|.+|+. ++..++|+.|
T Consensus 66 ~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 140 (150)
T 2i2y_A 66 HRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRV 140 (150)
T ss_dssp CSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCC
T ss_pred cccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 3455567899999999999999999999999999999999876 57999999999999999998 7889999999
Q ss_pred EEeeecCC
Q 025858 89 EIKRTIPK 96 (247)
Q Consensus 89 ~v~~~~~~ 96 (247)
+|.++.++
T Consensus 141 ~v~~a~~~ 148 (150)
T 2i2y_A 141 RVELSNGE 148 (150)
T ss_dssp EEEECCCC
T ss_pred EEEEcCCC
Confidence 99998765
No 322
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.67 E-value=2.6e-16 Score=115.66 Aligned_cols=79 Identities=15% Similarity=0.163 Sum_probs=71.0
Q ss_pred ccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeE-EEEEEcCHHHHHHHHHcCCCcccCC--cEEEEe
Q 025858 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGF-GFVIFDSEEVVDEMLSKGNMIDMAG--TQVSLI 181 (247)
Q Consensus 105 ~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~ai~~l~~~~~~g--~~l~v~ 181 (247)
..-.|||+||+..+|+++|+++|++||.|.+|.++.+ ++|+ |||+|.+.++|.+|++.|||..+.| +.|+|.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 3457889999999999999999999999999998765 3577 9999999999999999999999998 889999
Q ss_pred ecccCcc
Q 025858 182 GWSPVNQ 188 (247)
Q Consensus 182 ~a~~~~~ 188 (247)
+++++..
T Consensus 102 ~ak~~~l 108 (130)
T 3zzy_A 102 FSKLTSL 108 (130)
T ss_dssp ECSCSSC
T ss_pred ecCCCce
Confidence 9987543
No 323
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.8e-16 Score=114.90 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=67.7
Q ss_pred CeEEEcCC----CCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecC----HHH----HHHHHh----ccCc
Q 025858 19 GKIFIGGL----PKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYAD----PSV----VDKVIE----DTHI 82 (247)
Q Consensus 19 ~~l~v~nL----p~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~----~~~----a~~a~~----~~~~ 82 (247)
..|||+|| |+.++|++|+++|+.||+|.++.++.|+.||.++|||||+|.+ +++ |.+|+. ++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 433 778876 7789
Q ss_pred cCCeEEEEeee
Q 025858 83 INGKQVEIKRT 93 (247)
Q Consensus 83 l~g~~i~v~~~ 93 (247)
++|+.|+|..-
T Consensus 83 I~Gr~irV~ln 93 (136)
T 2j8a_A 83 IMGFKFEVILN 93 (136)
T ss_dssp ETTEEEEEEEC
T ss_pred ecCcEEEEEEC
Confidence 99999999874
No 324
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.67 E-value=1.3e-16 Score=120.19 Aligned_cols=83 Identities=18% Similarity=0.303 Sum_probs=73.5
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEE--------EEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccC
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH--------QIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMA 174 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v--------~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~ 174 (247)
..+.++|||+|||..+|+++|+++|++||.|..+ .+. .++.++|||||+|.+.++|.+|+..|||..+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 3457899999999999999999999999998764 333 35889999999999999999999999999999
Q ss_pred CcEEEEeecccCcc
Q 025858 175 GTQVSLIGWSPVNQ 188 (247)
Q Consensus 175 g~~l~v~~a~~~~~ 188 (247)
|+.|.|.++.+...
T Consensus 119 g~~l~V~~a~~~~~ 132 (143)
T 3egn_A 119 GKPMVVQFARSARP 132 (143)
T ss_dssp TEECEEEECCCSCC
T ss_pred CcEEEEEECCCCCC
Confidence 99999999976544
No 325
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.66 E-value=1.2e-16 Score=122.71 Aligned_cols=80 Identities=40% Similarity=0.764 Sum_probs=75.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEEeeecC
Q 025858 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIP 95 (247)
Q Consensus 17 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v~~~~~ 95 (247)
+.++|||+|||.++|+++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|++ ++..++|+.|.|.++.+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCC
Confidence 46789999999999999999999999999999999998899999999999999999999999 77899999999999976
Q ss_pred C
Q 025858 96 K 96 (247)
Q Consensus 96 ~ 96 (247)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 326
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.7e-16 Score=111.22 Aligned_cols=78 Identities=26% Similarity=0.500 Sum_probs=68.4
Q ss_pred CCCCCCCeEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEE
Q 025858 13 GDGASPGKIFIGGLPK-DTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVE 89 (247)
Q Consensus 13 ~~~~~~~~l~v~nLp~-~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~ 89 (247)
.+..+.++|||+|||. ++|+++|+++|++||.|.++.+. +|||||+|.+.++|.+|++ ++..+.|+.|+
T Consensus 5 ~~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 76 (96)
T 2kvi_A 5 HNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLI 76 (96)
T ss_dssp ----CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBC
T ss_pred ccCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 3456789999999998 99999999999999999999984 6899999999999999998 78899999999
Q ss_pred EeeecCCCC
Q 025858 90 IKRTIPKGS 98 (247)
Q Consensus 90 v~~~~~~~~ 98 (247)
|.++.+...
T Consensus 77 V~~a~~~~~ 85 (96)
T 2kvi_A 77 LEVSSSNAR 85 (96)
T ss_dssp EEEEECCCC
T ss_pred EEEcCcCCC
Confidence 999976544
No 327
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.66 E-value=1.2e-16 Score=115.98 Aligned_cols=78 Identities=23% Similarity=0.312 Sum_probs=66.7
Q ss_pred CccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcE-----E
Q 025858 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQ-----V 178 (247)
Q Consensus 104 ~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~-----l 178 (247)
...++|||+|||.++++++|+++|++||.|..|.++.+ |||||+|.+.++|++|++.||+..+.|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 34689999999999999999999999999999999765 79999999999999999999999999998 7
Q ss_pred EEeecccCcc
Q 025858 179 SLIGWSPVNQ 188 (247)
Q Consensus 179 ~v~~a~~~~~ 188 (247)
+|..+.++..
T Consensus 87 ~v~~~~~~~~ 96 (115)
T 3beg_B 87 RVKVDGPRSP 96 (115)
T ss_dssp EEEECC----
T ss_pred EeccCCCCCC
Confidence 7777665443
No 328
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.66 E-value=5.5e-16 Score=119.62 Aligned_cols=80 Identities=26% Similarity=0.488 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEee
Q 025858 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKR 92 (247)
Q Consensus 15 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~ 92 (247)
....++|||+|||.++|+++|+++|++||.|.++.++.++.++.++|+|||+|.+.++|.+|++ ++..++|+.|.|.+
T Consensus 91 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 3457899999999999999999999999999999999998899999999999999999999998 78899999999998
Q ss_pred ec
Q 025858 93 TI 94 (247)
Q Consensus 93 ~~ 94 (247)
+.
T Consensus 171 As 172 (172)
T 2g4b_A 171 AS 172 (172)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 329
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.66 E-value=9e-16 Score=121.10 Aligned_cols=84 Identities=26% Similarity=0.472 Sum_probs=78.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEee
Q 025858 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKR 92 (247)
Q Consensus 15 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~ 92 (247)
..+.++|||+|||.++|+++|+++|++||.|.++.+..++.++.++|||||+|.+.++|.+|++ ++..++|+.|.|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3677999999999999999999999999999999999998899999999999999999999998 78899999999999
Q ss_pred ecCCCC
Q 025858 93 TIPKGS 98 (247)
Q Consensus 93 ~~~~~~ 98 (247)
+.+...
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 977543
No 330
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.4e-16 Score=114.81 Aligned_cols=76 Identities=14% Similarity=0.224 Sum_probs=68.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEee
Q 025858 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKR 92 (247)
Q Consensus 15 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~ 92 (247)
....++|||+|||.++|+++|+++|++||.|.++.++. ++|||||+|.+.++|.+|++ ++..++|+.|.|.|
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999998864 56899999999999999998 78899999999999
Q ss_pred ecCC
Q 025858 93 TIPK 96 (247)
Q Consensus 93 ~~~~ 96 (247)
+...
T Consensus 81 a~~~ 84 (111)
T 1whx_A 81 APIG 84 (111)
T ss_dssp EETT
T ss_pred CCCC
Confidence 8654
No 331
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.66 E-value=7.7e-17 Score=121.37 Aligned_cols=86 Identities=19% Similarity=0.359 Sum_probs=72.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEE--E---eecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCC
Q 025858 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSV--I---MKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIING 85 (247)
Q Consensus 13 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~--~---~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g 85 (247)
....++++|||+|||.++|+++|+++|+.||.|.++. + +....++.++|||||+|.+.++|.+|+. ++..++|
T Consensus 40 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 40 EPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp CCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 3456789999999999999999999999999987641 1 1112278999999999999999999998 7889999
Q ss_pred eEEEEeeecCCCC
Q 025858 86 KQVEIKRTIPKGS 98 (247)
Q Consensus 86 ~~i~v~~~~~~~~ 98 (247)
+.|.|.++.+...
T Consensus 120 ~~l~V~~a~~~~~ 132 (143)
T 3egn_A 120 KPMVVQFARSARP 132 (143)
T ss_dssp EECEEEECCCSCC
T ss_pred cEEEEEECCCCCC
Confidence 9999999976544
No 332
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3.9e-16 Score=107.08 Aligned_cols=74 Identities=16% Similarity=0.223 Sum_probs=66.1
Q ss_pred ccEEEcCCCCCCCHHH----HHHHHHhc-CCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEe
Q 025858 107 KKIFVGGIPSSVSEDE----LKNFFSKY-GKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLI 181 (247)
Q Consensus 107 ~~l~v~~l~~~~t~~~----l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~ 181 (247)
+.|||+|||..+++++ |+++|++| |+|.+| ++ |+|||+|.+.++|.+|++.|||..+.|++|+|.
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 3499999999999987 55899999 599988 23 899999999999999999999999999999999
Q ss_pred ecccCcccc
Q 025858 182 GWSPVNQLL 190 (247)
Q Consensus 182 ~a~~~~~~~ 190 (247)
+|..+....
T Consensus 80 ~A~~~sd~~ 88 (96)
T 2diu_A 80 FTPKNRELC 88 (96)
T ss_dssp SSCCSCCCC
T ss_pred ecCCCccee
Confidence 998876543
No 333
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.65 E-value=4.3e-16 Score=107.44 Aligned_cols=74 Identities=15% Similarity=0.310 Sum_probs=67.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeee
Q 025858 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRT 93 (247)
Q Consensus 16 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~ 93 (247)
...++|||+|||.++|+++|+++|++| .|.++++. .++|||||+|.+.++|++|++ ++..++|+.|+|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 467899999999999999999999999 99999884 578999999999999999998 788999999999998
Q ss_pred cCC
Q 025858 94 IPK 96 (247)
Q Consensus 94 ~~~ 96 (247)
...
T Consensus 76 ~~~ 78 (88)
T 1wg1_A 76 PTD 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 553
No 334
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.65 E-value=9.8e-16 Score=122.55 Aligned_cols=84 Identities=17% Similarity=0.447 Sum_probs=78.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeee
Q 025858 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRT 93 (247)
Q Consensus 16 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~ 93 (247)
...++|||+|||.++|+++|+++|+.||.|.+++++.++.++.++|||||+|.+.++|.+|++ ++..++|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 456899999999999999999999999999999999998899999999999999999999998 788999999999999
Q ss_pred cCCCCC
Q 025858 94 IPKGSG 99 (247)
Q Consensus 94 ~~~~~~ 99 (247)
.+....
T Consensus 203 ~~~~~~ 208 (216)
T 2qfj_A 203 VTPPMP 208 (216)
T ss_dssp SSCSST
T ss_pred cCCCCC
Confidence 876543
No 335
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.64 E-value=5.8e-16 Score=106.31 Aligned_cols=72 Identities=26% Similarity=0.502 Sum_probs=66.5
Q ss_pred CccccEEEcCCCCCCCHHHHHHHHHhc----C-------CeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcc
Q 025858 104 FKTKKIFVGGIPSSVSEDELKNFFSKY----G-------KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMID 172 (247)
Q Consensus 104 ~~~~~l~v~~l~~~~t~~~l~~~f~~~----G-------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~ 172 (247)
.+.++|||+|||.++++++|+++|++| | .|.++.+.++ +|||||+|.+.++|.+|+ .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 457899999999999999999999999 8 8999998654 789999999999999999 899999
Q ss_pred cCCcEEEEee
Q 025858 173 MAGTQVSLIG 182 (247)
Q Consensus 173 ~~g~~l~v~~ 182 (247)
+.|+.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999864
No 336
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.64 E-value=1.5e-16 Score=128.93 Aligned_cols=108 Identities=19% Similarity=0.208 Sum_probs=79.5
Q ss_pred HHHh-ccCccCCeEEEEeeecCCCCCCCCCCccccEEEcCCCCCC---------CHHHHHHHHHhcCCeEEEEEEecCCC
Q 025858 75 KVIE-DTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSV---------SEDELKNFFSKYGKVLEHQIIRDHET 144 (247)
Q Consensus 75 ~a~~-~~~~l~g~~i~v~~~~~~~~~~~~~~~~~~l~v~~l~~~~---------t~~~l~~~f~~~G~i~~v~i~~~~~~ 144 (247)
.++. +...+.|+....................++|||+||+..+ ++++|+++|++||.|++|+++.
T Consensus 102 ~~~~~~~~D~fGr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~---- 177 (240)
T 3u1l_A 102 LALRTEVLDCFGREKFADYREDMGGIGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE---- 177 (240)
T ss_dssp HHHHCSSBCTTSSBCGGGTC---------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG----
T ss_pred hcccccCcccccchhcccchhcccCcCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC----
Confidence 3443 3445556653332222222222334567899999999998 7999999999999999999975
Q ss_pred CCceeEEEEEEcCHHHHHHHHHcCCCccc------------CCcEEEEeecccCcc
Q 025858 145 NRSRGFGFVIFDSEEVVDEMLSKGNMIDM------------AGTQVSLIGWSPVNQ 188 (247)
Q Consensus 145 ~~~~g~afV~f~~~~~a~~ai~~l~~~~~------------~g~~l~v~~a~~~~~ 188 (247)
++|||||+|.+.++|+.|+..|+|..+ .|+.|.|+||...+.
T Consensus 178 --~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 178 --SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp --GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred --CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCC
Confidence 478999999999999999999999999 899999999987554
No 337
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.64 E-value=7.5e-16 Score=119.05 Aligned_cols=84 Identities=26% Similarity=0.467 Sum_probs=76.2
Q ss_pred ccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC--CceeEEEEEEcCHHHHHHHHHcCCCcccC---CcEEE
Q 025858 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETN--RSRGFGFVIFDSEEVVDEMLSKGNMIDMA---GTQVS 179 (247)
Q Consensus 105 ~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~a~~ai~~l~~~~~~---g~~l~ 179 (247)
+.++|||+|||+++|+++|+++|++||.|.++++++++.++ .++|||||+|.+.++|.+|+..||+..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46799999999999999999999999999999999998876 89999999999999999999999998876 67788
Q ss_pred EeecccCcc
Q 025858 180 LIGWSPVNQ 188 (247)
Q Consensus 180 v~~a~~~~~ 188 (247)
+.++.+...
T Consensus 82 ~~~~~~~~~ 90 (175)
T 3nmr_A 82 MKPADSEKN 90 (175)
T ss_dssp EEECGGGCC
T ss_pred Ecccccccc
Confidence 888776544
No 338
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=1e-15 Score=111.97 Aligned_cols=76 Identities=17% Similarity=0.145 Sum_probs=68.1
Q ss_pred ccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeE-EEEEEcCHHHHHHHHHcCCCcccCC--cEEEEeec
Q 025858 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGF-GFVIFDSEEVVDEMLSKGNMIDMAG--TQVSLIGW 183 (247)
Q Consensus 107 ~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~ai~~l~~~~~~g--~~l~v~~a 183 (247)
..|||+||++.+|+++|+++|++||.|.+|.++.. .|+ |||+|.+.++|..|+..|||..|.| +.|+|.+|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 35789999999999999999999999999998652 275 9999999999999999999999988 58999999
Q ss_pred ccCcc
Q 025858 184 SPVNQ 188 (247)
Q Consensus 184 ~~~~~ 188 (247)
+++..
T Consensus 100 k~~~l 104 (124)
T 2e5i_A 100 RPTRL 104 (124)
T ss_dssp SCSCC
T ss_pred cCCcc
Confidence 87653
No 339
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.64 E-value=3.8e-16 Score=124.61 Aligned_cols=77 Identities=21% Similarity=0.269 Sum_probs=71.8
Q ss_pred ccccEEEcCCC-CCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeec
Q 025858 105 KTKKIFVGGIP-SSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGW 183 (247)
Q Consensus 105 ~~~~l~v~~l~-~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 183 (247)
++++|||+||| ..+++++|+++|++||.|.+|+++++ ++|||||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 56799999999 89999999999999999999999875 4789999999999999999999999999999999998
Q ss_pred ccC
Q 025858 184 SPV 186 (247)
Q Consensus 184 ~~~ 186 (247)
..+
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 754
No 340
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.64 E-value=1.1e-15 Score=120.86 Aligned_cols=79 Identities=14% Similarity=0.223 Sum_probs=73.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCCeEEEEeeecC
Q 025858 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIP 95 (247)
Q Consensus 17 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g~~i~v~~~~~ 95 (247)
..++|||+|||.++|+++|+++|++||.|.+++++++. ++.++|||||+|.+.++|.+|+. .+..++|+.|.|.++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 45899999999999999999999999999999999987 68999999999999999999998 56699999999998764
Q ss_pred C
Q 025858 96 K 96 (247)
Q Consensus 96 ~ 96 (247)
.
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 341
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.7e-16 Score=108.35 Aligned_cols=79 Identities=28% Similarity=0.541 Sum_probs=68.4
Q ss_pred ccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeecc
Q 025858 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWS 184 (247)
Q Consensus 105 ~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 184 (247)
..++|||+|||.++++++|+++|++||.|.+++++.+ ++|||||+|.+.++|++|+.. ...+.|+.|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 4689999999999999999999999999999999765 689999999999999865432 455699999999998
Q ss_pred cCcccc
Q 025858 185 PVNQLL 190 (247)
Q Consensus 185 ~~~~~~ 190 (247)
++....
T Consensus 77 ~~~~~~ 82 (88)
T 1wf0_A 77 PKHNSN 82 (88)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876543
No 342
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.63 E-value=1.2e-15 Score=134.76 Aligned_cols=83 Identities=24% Similarity=0.483 Sum_probs=77.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEee
Q 025858 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKR 92 (247)
Q Consensus 15 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~ 92 (247)
..+.++|||+|||.++|+++|.++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+. ++..|+|+.|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999998899999999999999999999997 78899999999999
Q ss_pred ecCCC
Q 025858 93 TIPKG 97 (247)
Q Consensus 93 ~~~~~ 97 (247)
+.+..
T Consensus 179 a~~~~ 183 (437)
T 3pgw_S 179 ERGRT 183 (437)
T ss_pred eCCCC
Confidence 97653
No 343
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.62 E-value=7.9e-16 Score=105.63 Aligned_cols=72 Identities=21% Similarity=0.461 Sum_probs=65.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccC----C-------CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCc
Q 025858 15 GASPGKIFIGGLPKDTTYATFNKHFGKY----G-------DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHI 82 (247)
Q Consensus 15 ~~~~~~l~v~nLp~~~te~~l~~~f~~~----G-------~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~ 82 (247)
..+.++|||+|||.++|+++|+++|++| | .|.++.+.++ +|||||+|.+.++|.+|+. ++..
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~ 76 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGII 76 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCE
Confidence 4678999999999999999999999999 8 8999988754 6899999999999999997 7889
Q ss_pred cCCeEEEEee
Q 025858 83 INGKQVEIKR 92 (247)
Q Consensus 83 l~g~~i~v~~ 92 (247)
++|+.|+|..
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999874
No 344
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.62 E-value=8.4e-16 Score=112.38 Aligned_cols=78 Identities=19% Similarity=0.296 Sum_probs=70.7
Q ss_pred CccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeec
Q 025858 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGW 183 (247)
Q Consensus 104 ~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 183 (247)
...++|||+|+ ++++++|+++|++||.|.+|.+. .++|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 45789999996 69999999999999999999985 46889999999999999999999999999999999999
Q ss_pred ccCccc
Q 025858 184 SPVNQL 189 (247)
Q Consensus 184 ~~~~~~ 189 (247)
.++...
T Consensus 109 ~~~~~~ 114 (121)
T 2bz2_A 109 RKQPML 114 (121)
T ss_dssp CSSCC-
T ss_pred CCCCCC
Confidence 876543
No 345
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.1e-15 Score=109.81 Aligned_cols=79 Identities=9% Similarity=0.125 Sum_probs=67.4
Q ss_pred CCCCCCeEEE--cCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCcc-----C
Q 025858 14 DGASPGKIFI--GGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHII-----N 84 (247)
Q Consensus 14 ~~~~~~~l~v--~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l-----~ 84 (247)
...++++||| +|||.++||++|+++|++||.|.++.++. .+|||||+|.+.++|++|++ ++..+ .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 3456889999 77999999999999999999999988753 36899999999999999998 77776 6
Q ss_pred CeEEEEeeecCCCC
Q 025858 85 GKQVEIKRTIPKGS 98 (247)
Q Consensus 85 g~~i~v~~~~~~~~ 98 (247)
|++|.|.++...+.
T Consensus 95 g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 95 KITLYLNFVEKVQW 108 (114)
T ss_dssp EEECEEEEESCCCC
T ss_pred CcEEEEEecccCcc
Confidence 78888888765444
No 346
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.62 E-value=3.2e-15 Score=113.90 Aligned_cols=80 Identities=16% Similarity=0.217 Sum_probs=69.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCC--eEEEE
Q 025858 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIING--KQVEI 90 (247)
Q Consensus 15 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g--~~i~v 90 (247)
+....+|||+|||+.+|+++|+++|++||.|.+|.+..+ .++|||||+|.+.++|++|++ ++..|.| +.|+|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 344567899999999999999999999999999998754 257999999999999999999 7888865 99999
Q ss_pred eeecCCCC
Q 025858 91 KRTIPKGS 98 (247)
Q Consensus 91 ~~~~~~~~ 98 (247)
.++.+...
T Consensus 119 ~~Ak~~~l 126 (164)
T 1sjr_A 119 DFSKLTSL 126 (164)
T ss_dssp EECSSSSC
T ss_pred EEecCCcc
Confidence 99987654
No 347
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.61 E-value=2.3e-15 Score=110.06 Aligned_cols=81 Identities=19% Similarity=0.358 Sum_probs=69.4
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeE
Q 025858 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQ 87 (247)
Q Consensus 10 ~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~ 87 (247)
+......+.++|||+|| ++|+++|+++|++||.|.++.+. .++|||||+|.+.++|.+|++ ++..++|+.
T Consensus 31 ~~~~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~ 102 (121)
T 2bz2_A 31 PERRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQ 102 (121)
T ss_dssp ----CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCCCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34455567899999996 79999999999999999999985 467999999999999999997 788999999
Q ss_pred EEEeeecCCCC
Q 025858 88 VEIKRTIPKGS 98 (247)
Q Consensus 88 i~v~~~~~~~~ 98 (247)
|+|.++.+...
T Consensus 103 l~V~~a~~~~~ 113 (121)
T 2bz2_A 103 LKVNIARKQPM 113 (121)
T ss_dssp CEEEECCSSCC
T ss_pred EEEEEeCCCCC
Confidence 99999987654
No 348
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.60 E-value=3.6e-15 Score=124.32 Aligned_cols=84 Identities=20% Similarity=0.359 Sum_probs=76.5
Q ss_pred CCCccccEEEcCCCCCCCHHHHH----HHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcE
Q 025858 102 KDFKTKKIFVGGIPSSVSEDELK----NFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQ 177 (247)
Q Consensus 102 ~~~~~~~l~v~~l~~~~t~~~l~----~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~ 177 (247)
+..+.++|||+|||.++++++|+ ++|++||.|.+|++++ +++++|||||+|.+.++|.+|+..|||..+.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34568899999999999999977 8999999999999876 5889999999999999999999999999999999
Q ss_pred EEEeecccCcc
Q 025858 178 VSLIGWSPVNQ 188 (247)
Q Consensus 178 l~v~~a~~~~~ 188 (247)
|+|.++..+..
T Consensus 82 l~v~~a~~~~~ 92 (282)
T 3pgw_A 82 MRIQYAKTDSD 92 (282)
T ss_pred EEEEEeccCcc
Confidence 99999976553
No 349
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.60 E-value=9.7e-16 Score=111.04 Aligned_cols=75 Identities=17% Similarity=0.452 Sum_probs=63.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeE-----E
Q 025858 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQ-----V 88 (247)
Q Consensus 16 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~-----i 88 (247)
...++|||+|||.++|+++|+++|++||.|.++.++.+ |||||+|.+.++|++|++ ++..|+|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 46789999999999999999999999999999999765 899999999999999998 788999988 7
Q ss_pred EEeeecCCC
Q 025858 89 EIKRTIPKG 97 (247)
Q Consensus 89 ~v~~~~~~~ 97 (247)
+|....+..
T Consensus 87 ~v~~~~~~~ 95 (115)
T 3beg_B 87 RVKVDGPRS 95 (115)
T ss_dssp EEEECC---
T ss_pred EeccCCCCC
Confidence 777765543
No 350
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4.8e-15 Score=101.66 Aligned_cols=74 Identities=9% Similarity=0.233 Sum_probs=64.2
Q ss_pred CCCCCe-EEEcCCCCCCCHHH----HHHHhccCC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCe
Q 025858 15 GASPGK-IFIGGLPKDTTYAT----FNKHFGKYG-DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGK 86 (247)
Q Consensus 15 ~~~~~~-l~v~nLp~~~te~~----l~~~f~~~G-~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~ 86 (247)
..++.| |||+|||.++++++ |+++|++|| +|.+| ++ |+|||+|.+.++|.+|++ ++..+.||
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr 74 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGN 74 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSS
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 345666 99999999999998 558999995 99888 33 999999999999999998 88899999
Q ss_pred EEEEeeecCCCC
Q 025858 87 QVEIKRTIPKGS 98 (247)
Q Consensus 87 ~i~v~~~~~~~~ 98 (247)
+|+|.++.....
T Consensus 75 ~i~v~~A~~~sd 86 (96)
T 2diu_A 75 RIIVSFTPKNRE 86 (96)
T ss_dssp CCEEESSCCSCC
T ss_pred eEEEEecCCCcc
Confidence 999999976544
No 351
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.58 E-value=1.5e-14 Score=106.33 Aligned_cols=79 Identities=18% Similarity=0.280 Sum_probs=68.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceE-EEEEecCHHHHHHHHh--ccCccCC--eEEEE
Q 025858 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGF-GFITYADPSVVDKVIE--DTHIING--KQVEI 90 (247)
Q Consensus 16 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~-afV~f~~~~~a~~a~~--~~~~l~g--~~i~v 90 (247)
..--.|||+||++.+|+++|+++|++||.|.+|++..+. +|+ |||+|.+.++|.+|++ ++..+.| +.|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 344467799999999999999999999999999987642 577 9999999999999999 8888888 88999
Q ss_pred eeecCCCCC
Q 025858 91 KRTIPKGSG 99 (247)
Q Consensus 91 ~~~~~~~~~ 99 (247)
.++.+....
T Consensus 101 ~~ak~~~l~ 109 (130)
T 3zzy_A 101 DFSKLTSLN 109 (130)
T ss_dssp EECSCSSCC
T ss_pred EecCCCcee
Confidence 999876543
No 352
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=2.7e-14 Score=104.34 Aligned_cols=76 Identities=14% Similarity=0.145 Sum_probs=65.8
Q ss_pred CCCe--EEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceE-EEEEecCHHHHHHHHh--ccCccCC--eEEE
Q 025858 17 SPGK--IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGF-GFITYADPSVVDKVIE--DTHIING--KQVE 89 (247)
Q Consensus 17 ~~~~--l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~-afV~f~~~~~a~~a~~--~~~~l~g--~~i~ 89 (247)
++++ |||+|||..+|+++|+++|++||.|.+|++... .|+ |||+|.+.++|..|++ ++..|.| +.|+
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~ 95 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLK 95 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEE
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEE
Confidence 4444 579999999999999999999999999999652 275 9999999999999998 7888877 6899
Q ss_pred EeeecCCCC
Q 025858 90 IKRTIPKGS 98 (247)
Q Consensus 90 v~~~~~~~~ 98 (247)
|.++.+...
T Consensus 96 V~~Ak~~~l 104 (124)
T 2e5i_A 96 IEYARPTRL 104 (124)
T ss_dssp EECCSCSCC
T ss_pred EEEecCCcc
Confidence 999987654
No 353
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.1e-14 Score=104.97 Aligned_cols=85 Identities=15% Similarity=0.258 Sum_probs=72.2
Q ss_pred CCCccccEEEcCCCCCCC-----------HHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCC
Q 025858 102 KDFKTKKIFVGGIPSSVS-----------EDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNM 170 (247)
Q Consensus 102 ~~~~~~~l~v~~l~~~~t-----------~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~ 170 (247)
...++++|+|.||..... +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|.+|+..|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 345688999999954332 6899999999999999965 553 3799999999999999999999999
Q ss_pred cccCCcEEEEeecccCcccc
Q 025858 171 IDMAGTQVSLIGWSPVNQLL 190 (247)
Q Consensus 171 ~~~~g~~l~v~~a~~~~~~~ 190 (247)
..+.|+.|+|.++.++....
T Consensus 87 ~~~~gr~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTDYQ 106 (112)
T ss_dssp CEETTEECEEEECCSCCCSS
T ss_pred CEECCcEEEEEEeCCCCCcc
Confidence 99999999999998865543
No 354
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.58 E-value=1e-14 Score=103.85 Aligned_cols=81 Identities=11% Similarity=0.113 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCC-----CCCHHHHHHHhccCCCeeEEEEeecCCC-CCcceEEEEEecCHHHHHHHHh--ccCccCCe
Q 025858 15 GASPGKIFIGGLPK-----DTTYATFNKHFGKYGDITDSVIMKDRYT-GQPRGFGFITYADPSVVDKVIE--DTHIINGK 86 (247)
Q Consensus 15 ~~~~~~l~v~nLp~-----~~te~~l~~~f~~~G~i~~i~~~~~~~~-~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~ 86 (247)
..++++|+|+||.. +-++++|++.|++||.|.++.+++++.+ +.++|+|||+|.+.++|.+|++ ++..++|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 35788999999952 3478999999999999999999998754 6899999999999999999998 88899999
Q ss_pred EEEEeeecC
Q 025858 87 QVEIKRTIP 95 (247)
Q Consensus 87 ~i~v~~~~~ 95 (247)
.|.|.++.+
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999854
No 355
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.58 E-value=2.1e-15 Score=107.39 Aligned_cols=83 Identities=20% Similarity=0.160 Sum_probs=71.9
Q ss_pred CccccEEEcCC--CCCCC--------HHHHHHHHHhcCCeEEEEEEecCCC--CCceeEEEEEEcCHHHHHHHHHcCCCc
Q 025858 104 FKTKKIFVGGI--PSSVS--------EDELKNFFSKYGKVLEHQIIRDHET--NRSRGFGFVIFDSEEVVDEMLSKGNMI 171 (247)
Q Consensus 104 ~~~~~l~v~~l--~~~~t--------~~~l~~~f~~~G~i~~v~i~~~~~~--~~~~g~afV~f~~~~~a~~ai~~l~~~ 171 (247)
.+++.|.+.|+ |.++. +++|++.|++||.|.++.|++++.+ +.++|+|||+|.+.++|.+|+..|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35788999998 33443 3799999999999999999988754 368999999999999999999999999
Q ss_pred ccCCcEEEEeecccC
Q 025858 172 DMAGTQVSLIGWSPV 186 (247)
Q Consensus 172 ~~~g~~l~v~~a~~~ 186 (247)
.+.|+.|+|.++...
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999997654
No 356
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.57 E-value=9.1e-15 Score=113.19 Aligned_cols=79 Identities=18% Similarity=0.254 Sum_probs=70.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEE
Q 025858 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEI 90 (247)
Q Consensus 13 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v 90 (247)
....+.++|||+|||.++|+++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|++ ++..++|+.|.|
T Consensus 94 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 168 (175)
T 1fje_B 94 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 168 (175)
T ss_dssp STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEE
T ss_pred cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344577899999999999999999999999987655 4478999999999999999999998 788999999999
Q ss_pred eeecCC
Q 025858 91 KRTIPK 96 (247)
Q Consensus 91 ~~~~~~ 96 (247)
.++.++
T Consensus 169 ~~a~~k 174 (175)
T 1fje_B 169 YYTGEK 174 (175)
T ss_dssp EECSSC
T ss_pred EecCCC
Confidence 998765
No 357
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.56 E-value=6.9e-15 Score=119.20 Aligned_cols=80 Identities=15% Similarity=0.186 Sum_probs=74.0
Q ss_pred CCCccccEEEcCCCC-CCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 102 KDFKTKKIFVGGIPS-SVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 102 ~~~~~~~l~v~~l~~-~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
...+.++|||+|||. ++++++|+++|++||.|.+|++++++ +|||||+|.+.++|.+|++.|||..+.|+.|.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345678999999999 99999999999999999999998874 789999999999999999999999999999999
Q ss_pred eecccC
Q 025858 181 IGWSPV 186 (247)
Q Consensus 181 ~~a~~~ 186 (247)
.++.++
T Consensus 105 ~~a~~~ 110 (229)
T 2adc_A 105 TLSKHQ 110 (229)
T ss_dssp ECCSCC
T ss_pred EEecCc
Confidence 998754
No 358
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.56 E-value=6.5e-15 Score=121.72 Aligned_cols=92 Identities=22% Similarity=0.374 Sum_probs=77.4
Q ss_pred EEeeecCCCCCCCCCCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcC
Q 025858 89 EIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168 (247)
Q Consensus 89 ~v~~~~~~~~~~~~~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l 168 (247)
.+.+.....+........++|||+|||.++|+++|+++|++||.|..|.+.+ ++|||||+|.+.++|.+|+..|
T Consensus 5 ~~~~~~~~~p~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l 78 (261)
T 3sde_A 5 TIDIKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAEL 78 (261)
T ss_dssp --CCCCCCCTTCCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHH
T ss_pred ccCccccCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHc
Confidence 3344433334444556778999999999999999999999999999999954 4789999999999999999999
Q ss_pred CCcccCCcEEEEeecccC
Q 025858 169 NMIDMAGTQVSLIGWSPV 186 (247)
Q Consensus 169 ~~~~~~g~~l~v~~a~~~ 186 (247)
||..+.|+.|.|.++.+.
T Consensus 79 ~g~~i~g~~l~v~~a~~~ 96 (261)
T 3sde_A 79 DGTILKSRPLRIRFATHG 96 (261)
T ss_dssp TTCEETTEECEEEECCCS
T ss_pred CCcEECCceeEeeecccC
Confidence 999999999999998763
No 359
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=7.7e-14 Score=100.46 Aligned_cols=85 Identities=18% Similarity=0.287 Sum_probs=70.6
Q ss_pred CCCCCCCCCCeEEEcCCCCCC-----------CHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh
Q 025858 10 PHTGDGASPGKIFIGGLPKDT-----------TYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78 (247)
Q Consensus 10 ~~~~~~~~~~~l~v~nLp~~~-----------te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 78 (247)
.....+.++++|+|+||.... ++++|+++|++||.|.++.+ .++ .++|||||+|.+.++|.+|++
T Consensus 7 ~~~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~ 82 (112)
T 2dit_A 7 GGPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQ 82 (112)
T ss_dssp SCCCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHH
T ss_pred CCCCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHH
Confidence 334566789999999994332 26899999999999999965 544 379999999999999999997
Q ss_pred --ccCccCCeEEEEeeecCCCC
Q 025858 79 --DTHIINGKQVEIKRTIPKGS 98 (247)
Q Consensus 79 --~~~~l~g~~i~v~~~~~~~~ 98 (247)
++..++|+.|.|.++.+...
T Consensus 83 ~lng~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 83 TLDGRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp HSTTCEETTEECEEEECCSCCC
T ss_pred HcCCCEECCcEEEEEEeCCCCC
Confidence 78899999999999877543
No 360
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.54 E-value=1.4e-14 Score=105.10 Aligned_cols=81 Identities=16% Similarity=0.144 Sum_probs=71.3
Q ss_pred ccccEEEcCCCC--CC---CHHHHHHHHHhcCCeEEEEEEecCC----CCCceeEEEEEEcCHHHHHHHHHcCCCcccCC
Q 025858 105 KTKKIFVGGIPS--SV---SEDELKNFFSKYGKVLEHQIIRDHE----TNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAG 175 (247)
Q Consensus 105 ~~~~l~v~~l~~--~~---t~~~l~~~f~~~G~i~~v~i~~~~~----~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g 175 (247)
++++|++.|+-. ++ .+++|++.|++||.|.+|.|++++. ++.++|++||+|.+.++|.+|+..|||+.+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 577899999842 22 3689999999999999999999864 45788999999999999999999999999999
Q ss_pred cEEEEeeccc
Q 025858 176 TQVSLIGWSP 185 (247)
Q Consensus 176 ~~l~v~~a~~ 185 (247)
+.|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998765
No 361
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.53 E-value=3.1e-15 Score=106.35 Aligned_cols=72 Identities=24% Similarity=0.296 Sum_probs=63.2
Q ss_pred EcCCCCCCCHHHHHHHH------------HhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEE
Q 025858 111 VGGIPSSVSEDELKNFF------------SKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQV 178 (247)
Q Consensus 111 v~~l~~~~t~~~l~~~f------------~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l 178 (247)
+.+|+..+++++|++.| ++||.|.+|.++++.. ++++|||||+|.+.++|.+|+..|||+.+.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 55677777777666655 9999999999998754 7899999999999999999999999999999999
Q ss_pred EEeec
Q 025858 179 SLIGW 183 (247)
Q Consensus 179 ~v~~a 183 (247)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99875
No 362
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.52 E-value=9.9e-15 Score=115.35 Aligned_cols=77 Identities=16% Similarity=0.205 Sum_probs=71.8
Q ss_pred ccccEEEcCCCC-CCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeec
Q 025858 105 KTKKIFVGGIPS-SVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGW 183 (247)
Q Consensus 105 ~~~~l~v~~l~~-~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a 183 (247)
.+++|||+|||+ ++++++|+++|++||.|.+|++++++ +|||||+|.+.++|.+|+..|||..+.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 357999999999 99999999999999999999998773 789999999999999999999999999999999998
Q ss_pred ccC
Q 025858 184 SPV 186 (247)
Q Consensus 184 ~~~ 186 (247)
.++
T Consensus 77 ~~~ 79 (198)
T 1qm9_A 77 KHQ 79 (198)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 363
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2.1e-13 Score=95.94 Aligned_cols=77 Identities=10% Similarity=0.153 Sum_probs=66.9
Q ss_pred CCCeEEEcCCC-------CCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHhccCccCCeEEE
Q 025858 17 SPGKIFIGGLP-------KDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVE 89 (247)
Q Consensus 17 ~~~~l~v~nLp-------~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~l~g~~i~ 89 (247)
..++|.|.-.+ .++|+++|+++|++||.|.++.++ +.++|||||+|.+.++|.+|++.+..+.|++|+
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~ 83 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVGLVDNPLK 83 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCBCSSSBCE
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCCCCCCeEE
Confidence 36678787654 468999999999999999999997 367899999999999999999977778999999
Q ss_pred EeeecCCCC
Q 025858 90 IKRTIPKGS 98 (247)
Q Consensus 90 v~~~~~~~~ 98 (247)
|.|+.+...
T Consensus 84 V~~a~~~~~ 92 (100)
T 2d9o_A 84 ISWLEGQPQ 92 (100)
T ss_dssp EECSSCCCC
T ss_pred EEEccCCCC
Confidence 999877654
No 364
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.51 E-value=2.4e-14 Score=116.03 Aligned_cols=80 Identities=14% Similarity=0.276 Sum_probs=68.4
Q ss_pred CCCCCCCeEEEcCCCCCC---------CHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccC
Q 025858 13 GDGASPGKIFIGGLPKDT---------TYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTH 81 (247)
Q Consensus 13 ~~~~~~~~l~v~nLp~~~---------te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~ 81 (247)
......++|||+|||.++ +|++|+++|++||.|.+|+++. ++|||||+|.+.++|+.|++ +++
T Consensus 129 s~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~ 202 (240)
T 3u1l_A 129 SFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQ 202 (240)
T ss_dssp --CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTC
T ss_pred ccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCC
Confidence 345678999999999998 7999999999999999999985 46999999999999999998 777
Q ss_pred cc------------CCeEEEEeeecCCCC
Q 025858 82 II------------NGKQVEIKRTIPKGS 98 (247)
Q Consensus 82 ~l------------~g~~i~v~~~~~~~~ 98 (247)
.| .|+.|.|.|+...+.
T Consensus 203 ~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 203 TLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EEeccccccccccCCCCEEEEEEccCCCC
Confidence 78 899999999986544
No 365
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=3.5e-13 Score=94.82 Aligned_cols=67 Identities=18% Similarity=0.226 Sum_probs=59.6
Q ss_pred CCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeecccCccc
Q 025858 116 SSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWSPVNQL 189 (247)
Q Consensus 116 ~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~~~~~ 189 (247)
..+++++|+++|++||.|.+|.++ ++++|||||+|.+.++|..|+..+++ +.|+.|+|.|+.++...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQD 93 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCCC
Confidence 579999999999999999999997 35899999999999999999998555 67999999999876653
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.43 E-value=4.5e-13 Score=97.18 Aligned_cols=79 Identities=16% Similarity=0.287 Sum_probs=68.9
Q ss_pred CCCeEEEcCC--CCCC---CHHHHHHHhccCCCeeEEEEeecCC----CCCcceEEEEEecCHHHHHHHHh--ccCccCC
Q 025858 17 SPGKIFIGGL--PKDT---TYATFNKHFGKYGDITDSVIMKDRY----TGQPRGFGFITYADPSVVDKVIE--DTHIING 85 (247)
Q Consensus 17 ~~~~l~v~nL--p~~~---te~~l~~~f~~~G~i~~i~~~~~~~----~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g 85 (247)
++++|+++|+ |.++ .+++|++.|++||.|.++.+++++. ++.++|+|||+|.+.++|.+|++ ++..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 6899999999 3333 3789999999999999999999864 35678999999999999999998 8889999
Q ss_pred eEEEEeeecC
Q 025858 86 KQVEIKRTIP 95 (247)
Q Consensus 86 ~~i~v~~~~~ 95 (247)
|.|+|.+...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998743
No 367
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.42 E-value=3.7e-13 Score=95.69 Aligned_cols=80 Identities=14% Similarity=0.150 Sum_probs=69.8
Q ss_pred CCCCeEEEcCC--CCCCC--------HHHHHHHhccCCCeeEEEEeecCCC--CCcceEEEEEecCHHHHHHHHh--ccC
Q 025858 16 ASPGKIFIGGL--PKDTT--------YATFNKHFGKYGDITDSVIMKDRYT--GQPRGFGFITYADPSVVDKVIE--DTH 81 (247)
Q Consensus 16 ~~~~~l~v~nL--p~~~t--------e~~l~~~f~~~G~i~~i~~~~~~~~--~~~~g~afV~f~~~~~a~~a~~--~~~ 81 (247)
.+++.|.+.|+ |.+.. +++|++.|++||.|.++.+++++.+ +.++|+|||+|.+.++|.+|++ ++.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 57899999998 54544 3689999999999999999988754 4689999999999999999998 888
Q ss_pred ccCCeEEEEeeecC
Q 025858 82 IINGKQVEIKRTIP 95 (247)
Q Consensus 82 ~l~g~~i~v~~~~~ 95 (247)
.++||.|+|.+...
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998753
No 368
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.41 E-value=7.7e-14 Score=99.09 Aligned_cols=70 Identities=14% Similarity=0.362 Sum_probs=61.1
Q ss_pred EcCCCCCCCHHHHHHHh------------ccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEE
Q 025858 23 IGGLPKDTTYATFNKHF------------GKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQV 88 (247)
Q Consensus 23 v~nLp~~~te~~l~~~f------------~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i 88 (247)
+.+||..+|+++|++.| ++||.|.++.++++. ++.++|||||+|.+.++|.+|++ ++..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45667777787777666 999999999999887 57899999999999999999998 8889999999
Q ss_pred EEeee
Q 025858 89 EIKRT 93 (247)
Q Consensus 89 ~v~~~ 93 (247)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99876
No 369
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.39 E-value=7.3e-13 Score=95.43 Aligned_cols=78 Identities=13% Similarity=0.075 Sum_probs=66.2
Q ss_pred CccccEEEcCCCCCCC----------HHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCccc
Q 025858 104 FKTKKIFVGGIPSSVS----------EDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDM 173 (247)
Q Consensus 104 ~~~~~l~v~~l~~~~t----------~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~ 173 (247)
.++++|.+.|+=..-. +++|++.|++||.|.+|.+.++. ++|+|||+|.+.++|.+|+..|||+.+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3567888888843221 36899999999999999996653 589999999999999999999999999
Q ss_pred CCcEEEEeeccc
Q 025858 174 AGTQVSLIGWSP 185 (247)
Q Consensus 174 ~g~~l~v~~a~~ 185 (247)
.|+.|.|.++..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999999753
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.38 E-value=8.8e-13 Score=112.31 Aligned_cols=77 Identities=17% Similarity=0.215 Sum_probs=65.3
Q ss_pred CCCccccEEEcC--CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccC---Cc
Q 025858 102 KDFKTKKIFVGG--IPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMA---GT 176 (247)
Q Consensus 102 ~~~~~~~l~v~~--l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~---g~ 176 (247)
...++++|||+| |+..+|+++|+++|++||+|.+|.+.+ +||||||+|.+.++|++|++.|||..+. |+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 345678999999 578999999999999999999987743 4789999999999999999999999873 45
Q ss_pred --EEEEeecc
Q 025858 177 --QVSLIGWS 184 (247)
Q Consensus 177 --~l~v~~a~ 184 (247)
.+.+.++.
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 46666664
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.25 E-value=9.5e-12 Score=105.93 Aligned_cols=64 Identities=8% Similarity=0.154 Sum_probs=55.7
Q ss_pred CCCCCCeEEEcC--CCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCcc
Q 025858 14 DGASPGKIFIGG--LPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHII 83 (247)
Q Consensus 14 ~~~~~~~l~v~n--Lp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l 83 (247)
.+.++++|||+| |+.++||++|+++|++||+|.+|.+.. +||||||+|.+.++|++|++ ++..+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 357789999999 588999999999999999999887743 47999999999999999998 56544
No 372
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=3.9e-11 Score=81.51 Aligned_cols=74 Identities=22% Similarity=0.263 Sum_probs=62.8
Q ss_pred CccccEEEcCCCC----CCCH----HHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCC
Q 025858 104 FKTKKIFVGGIPS----SVSE----DELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAG 175 (247)
Q Consensus 104 ~~~~~l~v~~l~~----~~t~----~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g 175 (247)
++..+|.|.-.+. ++-+ .+|.+.|++||.|..++++.++ +||+|.+.++|.+|++ |||..+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 4566788877662 3433 6889999999999999998873 8999999999999998 99999999
Q ss_pred cEEEEeecccC
Q 025858 176 TQVSLIGWSPV 186 (247)
Q Consensus 176 ~~l~v~~a~~~ 186 (247)
+.|+|+.+++.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999998763
No 373
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.19 E-value=8e-11 Score=84.68 Aligned_cols=76 Identities=9% Similarity=0.139 Sum_probs=64.1
Q ss_pred CCCCCeEEEcCC--CCCC--------CHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCc
Q 025858 15 GASPGKIFIGGL--PKDT--------TYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHI 82 (247)
Q Consensus 15 ~~~~~~l~v~nL--p~~~--------te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~ 82 (247)
+.++++|.+.|+ |.+. .+++|++.|++||.|.++.+.++. .+|+|||+|.+.++|.+|++ ++..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 457889999998 3321 145789999999999999986653 58999999999999999998 8889
Q ss_pred cCCeEEEEeeec
Q 025858 83 INGKQVEIKRTI 94 (247)
Q Consensus 83 l~g~~i~v~~~~ 94 (247)
++|+.|.|.++.
T Consensus 80 f~GR~i~v~~~~ 91 (114)
T 3s6e_A 80 FAGKMITAAYVP 91 (114)
T ss_dssp ETTEECEEEEEC
T ss_pred ECCEEEEEEEEc
Confidence 999999999874
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=1.4e-10 Score=83.68 Aligned_cols=78 Identities=13% Similarity=0.174 Sum_probs=68.0
Q ss_pred CCCccccEEEcCCCCC-CCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcC-HHHHHHHHHcCC--CcccCCcE
Q 025858 102 KDFKTKKIFVGGIPSS-VSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDS-EEVVDEMLSKGN--MIDMAGTQ 177 (247)
Q Consensus 102 ~~~~~~~l~v~~l~~~-~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~a~~ai~~l~--~~~~~g~~ 177 (247)
.-.....|+|+||+.. +++++|+++|++||+|..|.+.+++. .|||+|.+ .++|..|+..|| +..|.|..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 3456789999999999 99999999999999999999988755 49999999 899999999985 78899998
Q ss_pred EEEeeccc
Q 025858 178 VSLIGWSP 185 (247)
Q Consensus 178 l~v~~a~~ 185 (247)
+++.....
T Consensus 88 ~~~evL~G 95 (121)
T 1owx_A 88 VTWEVLEG 95 (121)
T ss_dssp EEEEECCH
T ss_pred EEEEECCC
Confidence 88865543
No 375
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.05 E-value=3.6e-10 Score=90.79 Aligned_cols=68 Identities=19% Similarity=0.109 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHhcCCeEEEEEEecCC----CCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeeccc
Q 025858 118 VSEDELKNFFSKYGKVLEHQIIRDHE----TNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWSP 185 (247)
Q Consensus 118 ~t~~~l~~~f~~~G~i~~v~i~~~~~----~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~~ 185 (247)
-.+++|++.|++||.|.++.++++.. ++.++|++||+|.+.++|.+|++.|||+.+.||.|.+.+...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 45689999999999999999996644 448999999999999999999999999999999999998764
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=1.1e-09 Score=74.43 Aligned_cols=74 Identities=15% Similarity=0.313 Sum_probs=62.5
Q ss_pred CCCCCeEEEcCCCC----CCCH----HHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCC
Q 025858 15 GASPGKIFIGGLPK----DTTY----ATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIING 85 (247)
Q Consensus 15 ~~~~~~l~v~nLp~----~~te----~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g 85 (247)
..+..||+|.-.|. ++-+ .+|.+.|.+||.|..++++.++ +||+|.+.++|.+|++ ++..++|
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~G 75 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLN 75 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETT
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCC
Confidence 34566888887762 3434 5688999999999999999875 8999999999999999 8899999
Q ss_pred eEEEEeeecCC
Q 025858 86 KQVEIKRTIPK 96 (247)
Q Consensus 86 ~~i~v~~~~~~ 96 (247)
|.|+|+.+.+.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999998754
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=3.5e-10 Score=77.20 Aligned_cols=74 Identities=18% Similarity=0.200 Sum_probs=63.2
Q ss_pred CCccccEEEcCCCCC-----CCH----HHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCccc
Q 025858 103 DFKTKKIFVGGIPSS-----VSE----DELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDM 173 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~-----~t~----~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~ 173 (247)
.++..+|.|.-+++. +-+ .+|.+.|++||.|..+++..++ +||+|.+.++|.+|++ |||..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 456778999988743 322 5788999999999999998873 9999999999999999 999999
Q ss_pred CCcEEEEeeccc
Q 025858 174 AGTQVSLIGWSP 185 (247)
Q Consensus 174 ~g~~l~v~~a~~ 185 (247)
.|+.|+|++..+
T Consensus 83 ~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 83 KGRAVKISGPSS 94 (95)
T ss_dssp TTEEEEEECCCC
T ss_pred CCeEEEEeccCC
Confidence 999999988654
No 378
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=1.2e-09 Score=78.94 Aligned_cols=72 Identities=14% Similarity=0.098 Sum_probs=61.7
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecC-HHHHHHHHh----ccCccCCeEEE
Q 025858 16 ASPGKIFIGGLPKD-TTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYAD-PSVVDKVIE----DTHIINGKQVE 89 (247)
Q Consensus 16 ~~~~~l~v~nLp~~-~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~-~~~a~~a~~----~~~~l~g~~i~ 89 (247)
.+.+.|+|+||+.+ +++++|+++|++||+|..|.+.++.. .|||.|.+ .++|..|+. .+..|.|..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 46678999999999 99999999999999999999988764 49999999 788998887 24578887777
Q ss_pred Eeee
Q 025858 90 IKRT 93 (247)
Q Consensus 90 v~~~ 93 (247)
+...
T Consensus 90 ~evL 93 (121)
T 1owx_A 90 WEVL 93 (121)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 7653
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=5.3e-09 Score=71.34 Aligned_cols=73 Identities=19% Similarity=0.307 Sum_probs=61.7
Q ss_pred CCCCCCeEEEcCCCCC-----CCH----HHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCcc
Q 025858 14 DGASPGKIFIGGLPKD-----TTY----ATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHII 83 (247)
Q Consensus 14 ~~~~~~~l~v~nLp~~-----~te----~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l 83 (247)
...+.-||+|.-++.+ +-+ .+|.+.|.+||.|..+++..++ +||+|.+.++|.+|++ ++..+
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v 82 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKV 82 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeee
Confidence 3456678999988743 333 4588999999999999999885 9999999999999999 99999
Q ss_pred CCeEEEEeeec
Q 025858 84 NGKQVEIKRTI 94 (247)
Q Consensus 84 ~g~~i~v~~~~ 94 (247)
+||.|+|+...
T Consensus 83 ~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 KGRAVKISGPS 93 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeccC
Confidence 99999998754
No 380
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.71 E-value=6.7e-08 Score=67.27 Aligned_cols=73 Identities=15% Similarity=0.143 Sum_probs=67.2
Q ss_pred ccccEEEcCCCCCCCHHHHHHHHHhc-----CCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEE
Q 025858 105 KTKKIFVGGIPSSVSEDELKNFFSKY-----GKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVS 179 (247)
Q Consensus 105 ~~~~l~v~~l~~~~t~~~l~~~f~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~ 179 (247)
..++|-+-+||..+++..|+.+.+++ |.|..+.+..|.. -|+|+|.+...|.+|.-.|+|.+|.|++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 46899999999999999999999999 9999999988854 699999999999999988999999999999
Q ss_pred Eeec
Q 025858 180 LIGW 183 (247)
Q Consensus 180 v~~a 183 (247)
+-..
T Consensus 94 ~gTv 97 (117)
T 2l9w_A 94 SGTI 97 (117)
T ss_dssp EECH
T ss_pred ecCH
Confidence 9554
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.69 E-value=3.8e-08 Score=78.88 Aligned_cols=65 Identities=15% Similarity=0.245 Sum_probs=57.7
Q ss_pred CCHHHHHHHhccCCCeeEEEEeecCC----CCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEEEeeec
Q 025858 30 TTYATFNKHFGKYGDITDSVIMKDRY----TGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTI 94 (247)
Q Consensus 30 ~te~~l~~~f~~~G~i~~i~~~~~~~----~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~v~~~~ 94 (247)
-.+++|++.|++||.|.++.+.++.. ++.++|++||+|.+.++|.+|++ ++..++||.|.+.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 35678999999999999999986654 34899999999999999999999 8899999999998864
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=8.2e-07 Score=61.27 Aligned_cols=89 Identities=18% Similarity=0.399 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcc---C--CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHhc-cCccCCeEE
Q 025858 15 GASPGKIFIGGLPKDTTYATFNKHFGK---Y--GDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED-THIINGKQV 88 (247)
Q Consensus 15 ~~~~~~l~v~nLp~~~te~~l~~~f~~---~--G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~~l~g~~i 88 (247)
.....+|.|.|||+++.++.|.-+|+. - |+|.++.... +-|+|+|.+.+.|++.+++ .|.|++..|
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~L 76 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQL 76 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBC
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEE
Confidence 345678999999999999999999986 2 4888877754 3599999999999999995 899999999
Q ss_pred EEeeecCCCCCCCCCCccccEEEcCCCCCCC
Q 025858 89 EIKRTIPKGSGQSKDFKTKKIFVGGIPSSVS 119 (247)
Q Consensus 89 ~v~~~~~~~~~~~~~~~~~~l~v~~l~~~~t 119 (247)
.|....+. ..++|.+.+|++.++
T Consensus 77 sV~P~~~~--------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 77 SLRPAPPR--------APARLLLQGLPPGTS 99 (104)
T ss_dssp EEEECCCC--------CCCCCCCCSCCCCCC
T ss_pred EEEcCCCC--------CcceEeeecCCCCCC
Confidence 99775443 356788899988764
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.38 E-value=2.2e-06 Score=59.69 Aligned_cols=71 Identities=14% Similarity=0.170 Sum_probs=64.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccC-----CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEE
Q 025858 16 ASPGKIFIGGLPKDTTYATFNKHFGKY-----GDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQV 88 (247)
Q Consensus 16 ~~~~~l~v~nLp~~~te~~l~~~f~~~-----G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i 88 (247)
+..++|-+-|||-.+++..|+.+.+.+ |.|..|.+..|. +-|+|+|.|...|.+|.- +|.++.|+.|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 457899999999999999999999999 999999999886 459999999999999874 8999999999
Q ss_pred EEee
Q 025858 89 EIKR 92 (247)
Q Consensus 89 ~v~~ 92 (247)
++.-
T Consensus 93 r~gT 96 (117)
T 2l9w_A 93 RSGT 96 (117)
T ss_dssp EEEC
T ss_pred EecC
Confidence 8853
No 384
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.81 E-value=0.00017 Score=49.08 Aligned_cols=55 Identities=16% Similarity=0.382 Sum_probs=47.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh
Q 025858 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78 (247)
Q Consensus 15 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 78 (247)
..-.+.+++ +.|+++...||.++|+.||-| .|+.+-|. .|||.|.+++.|..|+.
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHH
Confidence 344566777 999999999999999999955 48888875 79999999999999987
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.79 E-value=0.00037 Score=48.05 Aligned_cols=77 Identities=23% Similarity=0.321 Sum_probs=63.6
Q ss_pred CccccEEEcCCCCCCCHHHHHHHHHh-----cCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEE
Q 025858 104 FKTKKIFVGGIPSSVSEDELKNFFSK-----YGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQV 178 (247)
Q Consensus 104 ~~~~~l~v~~l~~~~t~~~l~~~f~~-----~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l 178 (247)
....+|.|.|||+.+.++.|.-.|+. -|.|+.++... +-|+|+|.+.+.|++.++. ....|.|..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 34678999999999999999999987 25888888744 3689999999999999984 4678999999
Q ss_pred EEeecccCccc
Q 025858 179 SLIGWSPVNQL 189 (247)
Q Consensus 179 ~v~~a~~~~~~ 189 (247)
.|....++...
T Consensus 77 sV~P~~~~~~~ 87 (104)
T 2dhx_A 77 SLRPAPPRAPA 87 (104)
T ss_dssp EEEECCCCCCC
T ss_pred EEEcCCCCCcc
Confidence 99876655443
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.77 E-value=5.2e-05 Score=52.48 Aligned_cols=75 Identities=12% Similarity=0.119 Sum_probs=63.4
Q ss_pred cccEEEcCCCCCC-C----HHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEE
Q 025858 106 TKKIFVGGIPSSV-S----EDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSL 180 (247)
Q Consensus 106 ~~~l~v~~l~~~~-t----~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v 180 (247)
.++|.|.||+.++ + .+.++++|.+|+++.....++. -.-..|.|.+.++|.+|-..||+..+.|++++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4679999998866 2 2678999999999888877654 225799999999999999999999999999999
Q ss_pred eecccC
Q 025858 181 IGWSPV 186 (247)
Q Consensus 181 ~~a~~~ 186 (247)
-++.+-
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 998743
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.60 E-value=0.00013 Score=49.58 Aligned_cols=70 Identities=7% Similarity=0.149 Sum_probs=57.9
Q ss_pred ccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCC--ceeEEEEEEcCHHHHHHHHHcCCCcccCCc
Q 025858 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNR--SRGFGFVIFDSEEVVDEMLSKGNMIDMAGT 176 (247)
Q Consensus 107 ~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~--~~g~afV~f~~~~~a~~ai~~l~~~~~~g~ 176 (247)
.+|.|++||+.+||+++.+.++....+........+.+.. .-.-|+|.|.+.+++....+.++|..+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 4789999999999999999999998887777766654332 235699999999999999999999887654
No 388
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.48 E-value=0.00061 Score=48.42 Aligned_cols=74 Identities=16% Similarity=0.240 Sum_probs=59.0
Q ss_pred CCccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCC-cEEEEe
Q 025858 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAG-TQVSLI 181 (247)
Q Consensus 103 ~~~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g-~~l~v~ 181 (247)
....+-|.|.+.|+.. ...|.+.|++||.|.+.... .....-.|.|.++.+|++|+.. ||..+.| -.|=|.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVK 92 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEE
Confidence 3456789999999884 77888999999999988862 1235899999999999999995 9999986 456666
Q ss_pred ecc
Q 025858 182 GWS 184 (247)
Q Consensus 182 ~a~ 184 (247)
+..
T Consensus 93 p~~ 95 (119)
T 1wwh_A 93 PCI 95 (119)
T ss_dssp ECC
T ss_pred ECC
Confidence 644
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.44 E-value=0.00076 Score=45.76 Aligned_cols=63 Identities=13% Similarity=0.163 Sum_probs=50.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCC--CCcceEEEEEecCHHHHHHHHh--ccC
Q 025858 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYT--GQPRGFGFITYADPSVVDKVIE--DTH 81 (247)
Q Consensus 19 ~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~--~~~~g~afV~f~~~~~a~~a~~--~~~ 81 (247)
+.|-|++||+.+||+++.+.+.....+.....+.-+.+ .....-|+|.|.+.+++....+ +++
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~ 68 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGY 68 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Confidence 46889999999999999999999888777766654432 2345679999999999998887 555
No 390
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.35 E-value=0.00094 Score=46.19 Aligned_cols=75 Identities=15% Similarity=0.108 Sum_probs=60.4
Q ss_pred CCCeEEEcCCCCCC-C----HHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh--ccCccCCeEEE
Q 025858 17 SPGKIFIGGLPKDT-T----YATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVE 89 (247)
Q Consensus 17 ~~~~l~v~nLp~~~-t----e~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~~l~g~~i~ 89 (247)
-.++|++.||+.++ + .+.++++|..|+++......+.- +-..|.|.+.++|.+|.. ++..++|+.++
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 45789999998865 3 25678999999998887776543 247899999999999988 66689999999
Q ss_pred EeeecCCC
Q 025858 90 IKRTIPKG 97 (247)
Q Consensus 90 v~~~~~~~ 97 (247)
|.++.+..
T Consensus 78 ~YFgq~~~ 85 (104)
T 1wey_A 78 LYFAQTLH 85 (104)
T ss_dssp EECCCCSS
T ss_pred EEecCCCC
Confidence 99987543
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.23 E-value=0.00054 Score=46.80 Aligned_cols=51 Identities=16% Similarity=0.398 Sum_probs=44.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh
Q 025858 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78 (247)
Q Consensus 19 ~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 78 (247)
+.+++ +.|+++.-.||..+|+.||. ..|+.+-|. .|||.|.+++.|..|+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHH
Confidence 45666 99999999999999999994 458888875 79999999999999987
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.95 E-value=0.003 Score=44.81 Aligned_cols=72 Identities=19% Similarity=0.324 Sum_probs=55.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh-ccCccCC-eEEEEe
Q 025858 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIING-KQVEIK 91 (247)
Q Consensus 14 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~l~g-~~i~v~ 91 (247)
+....+.|.|-+.|+.. -..|...|++||.|.+.... .....-.|.|.+..+|++|+. ++..++| -.|-|.
T Consensus 20 ~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVK 92 (119)
T ss_dssp -CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEE
T ss_pred CCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEE
Confidence 34467889999999995 56688899999999887761 123478999999999999999 8888875 444444
Q ss_pred e
Q 025858 92 R 92 (247)
Q Consensus 92 ~ 92 (247)
+
T Consensus 93 p 93 (119)
T 1wwh_A 93 P 93 (119)
T ss_dssp E
T ss_pred E
Confidence 4
No 393
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.91 E-value=0.0031 Score=42.94 Aligned_cols=54 Identities=24% Similarity=0.406 Sum_probs=43.7
Q ss_pred cccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcC
Q 025858 106 TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168 (247)
Q Consensus 106 ~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l 168 (247)
...+++ ..|++|...||.++|++||. ..|+.+-| | .|||.|.+++.|..|++.+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidD--T-----sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD--T-----SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEET--T-----EEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcC--C-----eEEEEecCHHHHHHHHHhc
Confidence 345566 99999999999999999995 34555544 2 7999999999999998854
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.77 E-value=0.00082 Score=45.94 Aligned_cols=71 Identities=4% Similarity=0.059 Sum_probs=52.1
Q ss_pred cccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCC--ceeEEEEEEcCHHHHHHHHHcCCCcccCCc
Q 025858 106 TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNR--SRGFGFVIFDSEEVVDEMLSKGNMIDMAGT 176 (247)
Q Consensus 106 ~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~--~~g~afV~f~~~~~a~~ai~~l~~~~~~g~ 176 (247)
+-+|.|+.||+.+||+++.+.++..-++........+.+.+ .-.-|+|.|.+.++.....+..+|..+.+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 55899999999999999888887765543333332222211 224589999999999999999999887554
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.65 E-value=0.0019 Score=44.13 Aligned_cols=53 Identities=25% Similarity=0.412 Sum_probs=43.5
Q ss_pred cEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCC
Q 025858 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN 169 (247)
Q Consensus 108 ~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~ 169 (247)
.++| +.|++|.-.||.++|++||. ..|+.+-| | .|||.|.+++.|..|++.++
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidD--T-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD--T-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEET--T-----EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcC--C-----eEEEEecCHHHHHHHHHhcc
Confidence 4556 99999999999999999993 45555554 2 79999999999999998643
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.47 E-value=0.0014 Score=57.70 Aligned_cols=55 Identities=11% Similarity=0.309 Sum_probs=42.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh
Q 025858 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78 (247)
Q Consensus 18 ~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 78 (247)
.+.|+|. .|...++.+|.++|++||+|.++.+-.++ .-||.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 3579997 89999999999999999999998887654 2699999999999998876
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.35 E-value=0.0037 Score=42.65 Aligned_cols=65 Identities=11% Similarity=0.123 Sum_probs=44.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCC--CCcceEEEEEecCHHHHHHHHh--ccC
Q 025858 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYT--GQPRGFGFITYADPSVVDKVIE--DTH 81 (247)
Q Consensus 17 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~--~~~~g~afV~f~~~~~a~~a~~--~~~ 81 (247)
.+-.|-|+.||+.+||+++.+.+...-++.....+.-+.+ .....-|||.|.+.+++....+ +++
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~ 76 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGY 76 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCc
Confidence 4567999999999999988777766544332222211111 1223569999999999998887 444
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.04 E-value=0.006 Score=43.93 Aligned_cols=78 Identities=18% Similarity=0.406 Sum_probs=54.9
Q ss_pred cccEEEcCCCCCCCHHHHHHHHHhcCCeEE-EEEEecC--------C----CC-CceeEEEEEEcCHHHHHHHHHcCCCc
Q 025858 106 TKKIFVGGIPSSVSEDELKNFFSKYGKVLE-HQIIRDH--------E----TN-RSRGFGFVIFDSEEVVDEMLSKGNMI 171 (247)
Q Consensus 106 ~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~-v~i~~~~--------~----~~-~~~g~afV~f~~~~~a~~ai~~l~~~ 171 (247)
..-|.|-+-|++ ....+.+.|++||.|.+ +...++. . .. ...+...|+|++..+|.+||+. ||.
T Consensus 7 e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGA 84 (132)
T ss_dssp -CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTC
T ss_pred ceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCe
Confidence 345777788654 55667889999999876 2221100 0 00 1245789999999999999995 999
Q ss_pred ccCCcEEEEeeccc
Q 025858 172 DMAGTQVSLIGWSP 185 (247)
Q Consensus 172 ~~~g~~l~v~~a~~ 185 (247)
.+.|..|=|.+..+
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99998888877654
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.79 E-value=0.0044 Score=54.51 Aligned_cols=57 Identities=16% Similarity=0.408 Sum_probs=42.8
Q ss_pred ccccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHc
Q 025858 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167 (247)
Q Consensus 105 ~~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~ 167 (247)
..++|+|. .|...++.+|.+.|++||.|.++.+-.+. .-||.|+|.+.+++..++..
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 35689997 79999999999999999999999876542 25999999999999988764
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.70 E-value=0.0094 Score=42.91 Aligned_cols=76 Identities=16% Similarity=0.291 Sum_probs=51.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeE-EEEeec--------CCCC-----CcceEEEEEecCHHHHHHHHh-ccC
Q 025858 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITD-SVIMKD--------RYTG-----QPRGFGFITYADPSVVDKVIE-DTH 81 (247)
Q Consensus 17 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~-i~~~~~--------~~~~-----~~~g~afV~f~~~~~a~~a~~-~~~ 81 (247)
....|.|-+.|++.+ ..+.+.|++||.|.+ ....+. +... .......|+|.+..+|.+|+. ++.
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ 84 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGA 84 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTC
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCe
Confidence 345677888887754 557889999998865 211110 0000 124577999999999999999 999
Q ss_pred ccCCeEEEEeee
Q 025858 82 IINGKQVEIKRT 93 (247)
Q Consensus 82 ~l~g~~i~v~~~ 93 (247)
.++|..|=|.+-
T Consensus 85 ii~G~mIGV~Py 96 (132)
T 3p3d_A 85 VFNGVLLGVIPY 96 (132)
T ss_dssp EETTEECEEEEC
T ss_pred EeCcEEEEEEEC
Confidence 999986656543
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=90.98 E-value=0.6 Score=41.58 Aligned_cols=53 Identities=17% Similarity=0.409 Sum_probs=44.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHh
Q 025858 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78 (247)
Q Consensus 17 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 78 (247)
..+.++|+ +|..+...+|.+.|+.||.+ +|+.+.+. .|||.|.+.+.|..+++
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~ 491 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVN 491 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHH
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHH
Confidence 34577776 99999999999999999954 57776664 79999999999999887
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.36 E-value=1.4 Score=39.25 Aligned_cols=55 Identities=22% Similarity=0.382 Sum_probs=43.5
Q ss_pred cccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCC
Q 025858 106 TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN 169 (247)
Q Consensus 106 ~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~ 169 (247)
...++|+ .|..|...+|.+.|+.||. .+|+.+-+ ..|||.|.+.+.|..+++.++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 3456666 9999999999999999995 44544333 279999999999999988764
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=52.04 E-value=9.7 Score=23.93 Aligned_cols=59 Identities=10% Similarity=0.062 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHhcC-----CeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcccCCcEEEEeecc
Q 025858 117 SVSEDELKNFFSKYG-----KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVSLIGWS 184 (247)
Q Consensus 117 ~~t~~~l~~~f~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~l~v~~a~ 184 (247)
.++..+|..++..-+ .|-.+++..+ +.||+-.. +.|..+++.|++..+.|+.+.++.+.
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 456667777776544 3556666332 78999864 56788888899999999999887653
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=46.45 E-value=60 Score=21.34 Aligned_cols=69 Identities=16% Similarity=0.099 Sum_probs=49.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHhccCccCCeEEEEe
Q 025858 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIK 91 (247)
Q Consensus 15 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~l~g~~i~v~ 91 (247)
....+-+-+-|+|..+-..++.-.....|---.+..+. |.|.|.|.+.++...|++..-.-++.++.+.
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkllnhnnnklqie 77 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIE 77 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEETTTTEEEEE
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHhcCCCEEEEE
Confidence 45677788999999999999988888888533444332 4699999999999999983333334444443
No 405
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=31.88 E-value=1.1e+02 Score=22.82 Aligned_cols=51 Identities=6% Similarity=0.079 Sum_probs=36.4
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHh--ccCCCeeEEEEeecCCCCCcceEEEEEecCHHHH
Q 025858 20 KIFIGGLPK-D--------TTYATFNKHF--GKYGDITDSVIMKDRYTGQPRGFGFITYADPSVV 73 (247)
Q Consensus 20 ~l~v~nLp~-~--------~te~~l~~~f--~~~G~i~~i~~~~~~~~~~~~g~afV~f~~~~~a 73 (247)
++.|-|+|. . ...++|++.| ..|.++. ++.+..+ .-..|+|.|+|.+.-.-
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~G 75 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNG 75 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHH
Confidence 566778876 2 3457899977 8998865 7777765 24679999999766543
No 406
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.33 E-value=1.1e+02 Score=19.80 Aligned_cols=56 Identities=11% Similarity=0.151 Sum_probs=40.0
Q ss_pred cEEEcCCCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHH
Q 025858 108 KIFVGGIPSSVSEDELKNFFSK-YG-KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166 (247)
Q Consensus 108 ~l~v~~l~~~~t~~~l~~~f~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~ 166 (247)
.-++-.++...+..+|++..++ |+ .|..|..+..+. | ..-|+|.+....+|.....
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~-~--~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR-G--EKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT-S--CEEEEEEECTTSCHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC-C--ceEEEEEcCCCCcHHHHHH
Confidence 3556667889999999999988 66 677887665432 2 2359999987776665544
No 407
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=28.73 E-value=1.2e+02 Score=19.67 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=26.7
Q ss_pred eEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHcCCCcc
Q 025858 133 VLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMID 172 (247)
Q Consensus 133 i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~~~~ 172 (247)
|.++.++. .-+||.||++...++...++....|..
T Consensus 40 i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~gV~ 74 (92)
T 3lpe_A 40 VYSILASE-----SLKGYVLVEAETKGDVEELIKGMPRVR 74 (92)
T ss_dssp EEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCTTEE
T ss_pred EEEEEEec-----ccCCEEEEEEecchhHHHHHHCCCCce
Confidence 55555532 268899999999999999998877643
No 408
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=27.91 E-value=1e+02 Score=20.09 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCCCCceeEEEEEEcC
Q 025858 132 KVLEHQIIRDHETNRSRGFGFVIFDS 157 (247)
Q Consensus 132 ~i~~v~i~~~~~~~~~~g~afV~f~~ 157 (247)
+|.++++.+-...|+-+++|-|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57788887776678899999999964
No 409
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=24.71 E-value=1.2e+02 Score=18.03 Aligned_cols=55 Identities=4% Similarity=-0.051 Sum_probs=42.0
Q ss_pred cccEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHHc
Q 025858 106 TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167 (247)
Q Consensus 106 ~~~l~v~~l~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~ 167 (247)
..++.|.++.=.-....|.+.+.. ..|..+.+- ...+-+.|.|.+.++...++..
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~------~~~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVD------LNEAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEEC------SSEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEE------ccCCEEEEEECCHHHHHHHHHH
Confidence 456888888877788999999999 888888772 2455778888766677777765
No 410
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=24.13 E-value=1.5e+02 Score=19.15 Aligned_cols=56 Identities=13% Similarity=0.156 Sum_probs=39.4
Q ss_pred cEEEcCCCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCCCCceeEEEEEEcCHHHHHHHHH
Q 025858 108 KIFVGGIPSSVSEDELKNFFSK-YG-KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166 (247)
Q Consensus 108 ~l~v~~l~~~~t~~~l~~~f~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ai~ 166 (247)
.-++-.++...+..+|++.+++ || .|..|..+..+. + ..-|+|.+...++|.....
T Consensus 23 n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~-~--~KKA~VtL~~g~~aid~~~ 80 (85)
T 1vq8_S 23 NKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMD-G--EKKAVVRLSEDDDAQEVAS 80 (85)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-S--SEEEEEEECTTSCHHHHHT
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCC-C--ceEEEEEECCCCcHHHHHH
Confidence 3456667889999999999987 66 678887666532 2 3358999977666554443
No 411
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=23.75 E-value=9.5 Score=27.81 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=16.0
Q ss_pred HHHHHHHHhcCCeEEEEEEecCCCCCceeEEEEEEc
Q 025858 121 DELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFD 156 (247)
Q Consensus 121 ~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 156 (247)
+|+.+++...|.|+.... .+||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn~--------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV--------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET--------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC--------CCCeeEEeeC
Confidence 345566666677665532 5779999865
No 412
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=23.42 E-value=61 Score=21.98 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=22.5
Q ss_pred ceeEEEEEEcCHHHHHHHHHcCCCcc
Q 025858 147 SRGFGFVIFDSEEVVDEMLSKGNMID 172 (247)
Q Consensus 147 ~~g~afV~f~~~~~a~~ai~~l~~~~ 172 (247)
.+||-|||=.+..+...|++.+.+..
T Consensus 50 lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 50 VKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 68999999999999999998765543
No 413
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=23.39 E-value=1.3e+02 Score=20.11 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=21.2
Q ss_pred CeEEEEEEecCCCCCceeEEEEEEcC
Q 025858 132 KVLEHQIIRDHETNRSRGFGFVIFDS 157 (247)
Q Consensus 132 ~i~~v~i~~~~~~~~~~g~afV~f~~ 157 (247)
.|.+|++.+-...|+-+++|-|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57788887776668899999999964
No 414
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=23.06 E-value=1.7e+02 Score=21.39 Aligned_cols=36 Identities=28% Similarity=0.411 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHhcCCeE---EEEEEecCCCCCceeEEEE
Q 025858 118 VSEDELKNFFSKYGKVL---EHQIIRDHETNRSRGFGFV 153 (247)
Q Consensus 118 ~t~~~l~~~f~~~G~i~---~v~i~~~~~~~~~~g~afV 153 (247)
.|+++|+++-.+.|++. ++.+..+..+|+.+.+||-
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~ 41 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYH 41 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEE
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEE
Confidence 58999999999999764 5566666447888877765
No 415
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=22.07 E-value=1.5e+02 Score=20.08 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=20.9
Q ss_pred CeEEEEEEecCCCCCceeEEEEEEcC
Q 025858 132 KVLEHQIIRDHETNRSRGFGFVIFDS 157 (247)
Q Consensus 132 ~i~~v~i~~~~~~~~~~g~afV~f~~ 157 (247)
.|.+|++.+-...|+-+++|-|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 56778887776678899999999964
No 416
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=24.84 E-value=23 Score=24.16 Aligned_cols=53 Identities=11% Similarity=0.066 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCCCceeEE--EEEEcCHHHHHHHHHcCCCcc
Q 025858 118 VSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFG--FVIFDSEEVVDEMLSKGNMID 172 (247)
Q Consensus 118 ~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~a--fV~f~~~~~a~~ai~~l~~~~ 172 (247)
-+++++..+..+.+ +..+.+.+-...|+. .|. +=.|.|.++|.+|+..|-...
T Consensus 34 ~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~-WyvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 34 SNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 44666777777775 344554443222322 232 347899999999999866433
Done!