BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025859
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HXT|A Chain A, Structure Of Human Mthfs
pdb|3HY3|A Chain A, Structure Of Human Mthfs With 10-Formyltetrahydrofolate
pdb|3HY4|A Chain A, Structure Of Human Mthfs With N5-Iminium Phosphate
pdb|3HY6|A Chain A, Structure Of Human Mthfs With Adp
Length = 203
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 100/212 (47%), Gaps = 31/212 (14%)
Query: 24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
KR LR ++++ L++M R + + + V+ ++ S+R+ ++S E++T ++
Sbjct: 10 KRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQD--EIETEEI 67
Query: 84 LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISS---IDDLIANSMNILEPAPVD 140
+ I Q K ++PR +++HM M I S I L S NI +P
Sbjct: 68 IKDIFQ---------RGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQPG--- 115
Query: 141 ADGNEREDVMQANEPVDLFLLPGLAFDXXXXXXXXXXXYYDTFLKK---YQELAKERNWR 197
+G+ RE+ + +DL +PGL FD YYD +LK+ +QE+
Sbjct: 116 -EGDVREEALSTG-GLDLIFMPGLGFDKHGNRLGRGKGYYDAYLKRCLQHQEV------- 166
Query: 198 QPLFVALSYSLQIMDEGIISATPKDMPVDALV 229
+P +AL++ QI + + DM VD ++
Sbjct: 167 KPYTLALAFKEQICLQ--VPVNENDMKVDEVL 196
>pdb|1SOU|A Chain A, Nmr Structure Of Aquifex Aeolicus 5,10-
Methenyltetrahydrofolate Synthetase: Northeast
Structural Genomics Consortium Target Qr46
Length = 194
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 94/213 (44%), Gaps = 39/213 (18%)
Query: 26 ILRSQVRKTLKSMDPSLRSHEDNAIQKIVLE----APWFKSSQRLCAYISCSALREVDTS 81
+L+S++RK + +L E + + V+ P FK S+++ Y C EVD +
Sbjct: 1 MLKSELRKKVLHKRINLSEEERRRLSEKVISNLKSLPEFKKSKKVALY--CPIKGEVDLT 58
Query: 82 KLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDA 141
L ++L+ K+L +P+VE + + ++ + S L + I+EP V+
Sbjct: 59 PLFPEVLK----------EKELILPKVE--GNEISLYRVHSPACLGVGAFGIMEP--VEG 104
Query: 142 DGNEREDVMQANEPVDLFLLPGLAFDXXXXXXXXXXXYYDTFLKKYQELAKERNWRQPLF 201
+ EDV D +PG+AFD YYD LK+ + L
Sbjct: 105 ERVNPEDV-------DFIAVPGVAFDLEGYRLGFGKGYYDRLLKRVKGLK---------- 147
Query: 202 VALSYSLQIMDEGIISATPKDMPVDALVSPSGV 234
V ++YS Q+ + + D+PVD LV+ V
Sbjct: 148 VGVAYSFQVFER--LPRDAWDIPVDVLVTEKNV 178
>pdb|2JCB|A Chain A, The Crystal Structure Of 5-Formyl-Tetrahydrofolate
Cycloligase From Bacillus Anthracis (Ba4489)
pdb|2JCB|B Chain B, The Crystal Structure Of 5-Formyl-Tetrahydrofolate
Cycloligase From Bacillus Anthracis (Ba4489)
Length = 200
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 19/138 (13%)
Query: 98 KTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVD 157
K K++ VP+ + M IS+ D L MN+ EP P + + A+E +D
Sbjct: 76 KEGKRVVVPKCNKETRTMSFRQISNFDQLETVYMNLREPIPALTEE------VNADE-ID 128
Query: 158 LFLLPGLAFDXXXXXXXXXXXYYDTFLKKYQELAKERNWRQPLFVALSYSLQIMDEGIIS 217
L ++PG+A+ YYD +L Y+ ++L+YS Q+++ I
Sbjct: 129 LQIVPGVAYTERGERIGYGGGYYDRYLVHYKGKT----------LSLAYSFQMVEH--IP 176
Query: 218 ATPKDMPVDALVSPSGVI 235
P D V+ +++ G +
Sbjct: 177 VEPFDKNVEKIITEKGTM 194
>pdb|1WKC|A Chain A, Crystal Structure Of A 5-Formyltetrahydrofolate
Cycloligase-Related Protein From Thermus Thermophilus
Hb8
Length = 184
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 50/133 (37%), Gaps = 27/133 (20%)
Query: 102 KLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLL 161
+ Y+P+V K + L +LEP ED +DL ++
Sbjct: 64 RYYLPKVAGKG-----LTVHPFGPLAPGPFGLLEPT------TPPEDPRV----LDLVVV 108
Query: 162 PGLAFDXXXXXXXXXXXYYDTFLKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPK 221
PGLAFD +YD FLK+ + + LF AL P
Sbjct: 109 PGLAFDREGYRLGHGQGFYDRFLKEVRAATVGVVPQALLFPALPRD------------PW 156
Query: 222 DMPVDALVSPSGV 234
D+PVD L + +GV
Sbjct: 157 DVPVDHLATEAGV 169
>pdb|1YDM|A Chain A, X-ray Structure Of Northeast Structural Genomics Target
Sr44
pdb|1YDM|B Chain B, X-ray Structure Of Northeast Structural Genomics Target
Sr44
pdb|1YDM|C Chain C, X-ray Structure Of Northeast Structural Genomics Target
Sr44
Length = 187
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 12/80 (15%)
Query: 156 VDLFLLPGLAFDXXXXXXXXXXXYYDTFLKKYQELAKERNWRQPLFVALSYSLQIMDEGI 215
+DL ++PG+ FD YYD +L +Y+ V+L Q+
Sbjct: 116 IDLXIVPGVCFDVNGFRVGFGGGYYDRYLSEYEGKT----------VSLLLECQLFAH-- 163
Query: 216 ISATPKDMPVDALVSPSGVI 235
+ P D+PV L++ +I
Sbjct: 164 VPRLPHDIPVHKLITEDRII 183
>pdb|1SBQ|A Chain A, Crystal Structure Of Methenyltetrahydrofolate Synthetase
From Mycoplasma Pneumoniae At 2.2 Resolution
pdb|1SBQ|B Chain B, Crystal Structure Of Methenyltetrahydrofolate Synthetase
From Mycoplasma Pneumoniae At 2.2 Resolution
pdb|1U3F|A Chain A, Structural And Functional Characterization Of A 5,10-
Methenyltetrahydrofolate Synthetase From Mycoplasma
Pneumoniae (Gi: 13508087)
pdb|1U3F|B Chain B, Structural And Functional Characterization Of A 5,10-
Methenyltetrahydrofolate Synthetase From Mycoplasma
Pneumoniae (Gi: 13508087)
pdb|1U3G|A Chain A, Structural And Functional Characterization Of A 5,10-
Methenyltetrahydrofolate Synthetase From Mycoplasma
Pneumoniae (gi: 13508087)
Length = 189
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 11/75 (14%)
Query: 156 VDLFLLPGLAFDXXXXXXXXXXXYYDTFLKKYQELAKERNWRQPLFVALSYSLQIMDEGI 215
+D FL+P + F+ YYD +L + RQ + ++YS Q +G
Sbjct: 124 IDCFLIPLVGFNKDNYRLGFGKGYYDRYLMQLT--------RQQPKIGIAYSFQ---KGD 172
Query: 216 ISATPKDMPVDALVS 230
A P D+ +D +++
Sbjct: 173 FLADPWDVQLDLIIN 187
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,585,295
Number of Sequences: 62578
Number of extensions: 239926
Number of successful extensions: 499
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 491
Number of HSP's gapped (non-prelim): 9
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)