BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025859
(247 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9D110|MTHFS_MOUSE 5-formyltetrahydrofolate cyclo-ligase OS=Mus musculus GN=Mthfs PE=2
SV=2
Length = 203
Score = 88.2 bits (217), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 113/212 (53%), Gaps = 31/212 (14%)
Query: 24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
KR LR+++++ L+++ R + + + V+ +++S+R+ ++S EV+T +
Sbjct: 10 KRGLRAELKQRLRALSAEERLRQSLLLTQKVIAHNQYQNSKRISIFLSMQD--EVETEVI 67
Query: 84 LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDD---LIANSMNILEPAPVD 140
+ I K K ++PR + +++HM M ++S ++ L S NI +P
Sbjct: 68 IKDIF---------KQGKICFIPRYQFQSNHMDMVRLTSSEEIALLPKTSWNIHQPG--- 115
Query: 141 ADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKK---YQELAKERNWR 197
+G+ RE+ + +DL LPGL FD+ G RLGRG GYYDT+LK+ +QE+
Sbjct: 116 -EGDVREEALSTG-GLDLIFLPGLGFDKDGNRLGRGKGYYDTYLKRCVQHQEV------- 166
Query: 198 QPLFVALSYSLQIMDEGIISATPKDMPVDALV 229
+P +AL++ QI + I DM VD ++
Sbjct: 167 KPYTMALAFKEQICPQ--IPVDEHDMKVDEVL 196
>sp|P80405|MTHFS_RABIT 5-formyltetrahydrofolate cyclo-ligase OS=Oryctolagus cuniculus
GN=MTHFS PE=1 SV=1
Length = 201
Score = 87.8 bits (216), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 112/209 (53%), Gaps = 25/209 (11%)
Query: 24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
KR LR+++++ L+++ R + + V+ ++ SQR+ ++S E++T ++
Sbjct: 10 KRSLRAELKQRLRAISAEERLRCQRLLTQKVIAHRQYQKSQRISIFLSMPD--EIETEEI 67
Query: 84 LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIA---NSMNILEPAPVD 140
+ I Q K ++PR +++HM M ++S D++ + S NI +P+ D
Sbjct: 68 IKDIFQ---------QGKVCFIPRYRLQSNHMDMVKLASADEISSLPKTSWNIHQPSESD 118
Query: 141 ADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQPL 200
RE+ + A +DL +PGL FDR+G RLGRG GYYDT+L++ ++ +P
Sbjct: 119 T----REEAL-ATGGLDLIFMPGLGFDRNGNRLGRGRGYYDTYLQR----CLQQQGAKPY 169
Query: 201 FVALSYSLQIMDEGIISATPKDMPVDALV 229
+AL++ QI + + T D+ VD ++
Sbjct: 170 TIALAFREQICPQVPVDDT--DVSVDEVL 196
>sp|P49914|MTHFS_HUMAN 5-formyltetrahydrofolate cyclo-ligase OS=Homo sapiens GN=MTHFS PE=1
SV=2
Length = 203
Score = 87.8 bits (216), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 108/212 (50%), Gaps = 31/212 (14%)
Query: 24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
KR LR ++++ L++M R + + + V+ ++ S+R+ ++S E++T ++
Sbjct: 10 KRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQD--EIETEEI 67
Query: 84 LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISS---IDDLIANSMNILEPAPVD 140
+ I Q K ++PR +++HM M I S I L S NI +P
Sbjct: 68 IKDIFQ---------RGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQPG--- 115
Query: 141 ADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKK---YQELAKERNWR 197
+G+ RE+ + +DL +PGL FD+ G RLGRG GYYD +LK+ +QE+
Sbjct: 116 -EGDVREEALSTG-GLDLIFMPGLGFDKHGNRLGRGKGYYDAYLKRCLQHQEV------- 166
Query: 198 QPLFVALSYSLQIMDEGIISATPKDMPVDALV 229
+P +AL++ QI + + DM VD ++
Sbjct: 167 KPYTLALAFKEQICLQ--VPVNENDMKVDEVL 196
>sp|Q9P7W2|FTHC_SCHPO Probable 5-formyltetrahydrofolate cyclo-ligase
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC1703.08c PE=3 SV=1
Length = 204
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 103/215 (47%), Gaps = 25/215 (11%)
Query: 28 RSQVRKTLKSMDPSLRSH----EDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
++Q+R L S L H + +I K V+E P +K + +C Y++ +EV T L
Sbjct: 5 KNQLRAILNSSLGKLADHIIDSQSISICKQVVELPEWKRCKNVCLYMNMPK-KEVRTRCL 63
Query: 84 LSQILQIPNADGDTKTRKKLYVPRVEDKNSH-MRMFHI-SSIDDLIANSMNILEPAPVDA 141
+ D K K +++P+ SH M M+ + + L N I EP
Sbjct: 64 I---------DVAFKEGKNVFIPKC--IGSHVMEMYQVFEKTESLTINKWGIAEP----- 107
Query: 142 DGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQPLF 201
+G R+ +M +L ++PG+AFD RLG G GYYD ++ KYQ A ++ R +F
Sbjct: 108 NGESRK-IMDDETDCELIIVPGVAFDEKLSRLGHGKGYYDNYISKYQSWALQKESRANMF 166
Query: 202 -VALSYSLQIMDEGIISATPKDMPVDALVSPSGVI 235
V + QI+ I +D +DALV+P VI
Sbjct: 167 KVGICLKEQILPNREIPMDTRDQKLDALVTPEKVI 201
>sp|Q9XWE6|MTHFS_CAEEL Probable 5-formyltetrahydrofolate cyclo-ligase OS=Caenorhabditis
elegans GN=Y106G6E.4 PE=3 SV=1
Length = 206
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 102/210 (48%), Gaps = 28/210 (13%)
Query: 27 LRSQVRKTLKSMDPSLRSHEDN----AIQKIVLEAPWFKSSQRLCAYISCSALREVDTSK 82
++S++R+ +K++ + E A+ + ++E+ WF+ S+RL Y+S S E+ T
Sbjct: 7 VKSELRQFMKTLLGKISKEETQRQTEAVFEKIIESKWFQESKRLSVYVSTSG--EIQTDS 64
Query: 83 LLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHI---SSIDDLIANSMNILEPAPV 139
++ + L++ K++++P+ ++ M M + ++ D+L + I +P P
Sbjct: 65 IIQKALEM---------GKEVFIPQFTKGSTAMDMVRVPDQTAFDNLPSTLWGIRQPEP- 114
Query: 140 DADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQP 199
+ P+DL L PG+AF G R G G GYYD F + + E + P
Sbjct: 115 ----KWKWQSYHETGPLDLILAPGVAFSPYGLRCGHGKGYYDRFFSTHHKHFPENS---P 167
Query: 200 LFVALSYSLQIMDEGIISATPKDMPVDALV 229
+ L+ QI+ G I + D+ +D ++
Sbjct: 168 KKIGLALREQII--GTIPISETDVELDEVI 195
>sp|P40099|FTHC_YEAST 5-formyltetrahydrofolate cyclo-ligase OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=FAU1 PE=1 SV=1
Length = 211
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 104/224 (46%), Gaps = 32/224 (14%)
Query: 24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
K++LR Q+++ + ++D + + E + I + V +S+R+ Y+S EV T ++
Sbjct: 4 KQLLRRQIKRVINALDYDIIAAESHTISQAVRSLIASANSRRVACYMSMDK-GEVTTGEI 62
Query: 84 LSQILQIPNADGD-------TKTRKKLYVPRVEDKNSHM---RMFHISSIDDLIANS-MN 132
+ + Q DG T T + + ED + H+ RM + + DL
Sbjct: 63 IKNLFQ----DGQEVFLPRCTHTSESKHFKLREDHHPHLIFHRMSSLKMVRDLKPQGPYQ 118
Query: 133 ILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFD-RSGRRLGRGGGYYDTFLKKYQELA 191
+ EP P E D++ D+ L+PG+AFD ++G R+G G GYYD F ++Y+ L
Sbjct: 119 LKEPEP----HIEESDIL------DVVLVPGVAFDIKTGARMGHGAGYYDDFFQRYKIL- 167
Query: 192 KERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVI 235
++PL V L Q+ I D +D +V G I
Sbjct: 168 --HEGQKPLLVGLCLMEQVASP--IPLEKHDYSMDCIVCGDGSI 207
>sp|Q8K9E3|Y396_BUCAP Uncharacterized protein BUsg_396 OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=BUsg_396 PE=3 SV=1
Length = 199
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 104/221 (47%), Gaps = 42/221 (19%)
Query: 22 QQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTS 81
Q ++ +RS +R S+ + + E N I + +++ + ++S E++T
Sbjct: 7 QNRKEIRSYIRIVRNSVTLTKKYDESNKIVRTAFNCNIIYNAKNIACFLSFDG--EINTY 64
Query: 82 KLLSQILQIPNAD------GDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILE 135
L+ + L + N + + +RK +VP F SI L N NIL+
Sbjct: 65 PLILK-LWLNNKNVFLPIVSSSYSRKLFFVP-----------FTCKSI--LYYNQYNILQ 110
Query: 136 PAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERN 195
P N ++ +++++ +DL ++P +AFD G RLG GGG+YD FLK N
Sbjct: 111 PF-----YNMKDIILESD--LDLIIVPLVAFDCRGVRLGMGGGFYDQFLK---------N 154
Query: 196 WRQPLF--VALSYSLQIMDEGIISATPKDMPVDALVSPSGV 234
W + F + ++Y Q ++ I P D+ + +++P+ +
Sbjct: 155 WERKKFIPIGMAYDFQFVNY--IPRQPWDISLPIVLTPNKI 193
>sp|P0AC28|YGFA_ECOLI Uncharacterized protein YgfA OS=Escherichia coli (strain K12)
GN=ygfA PE=1 SV=1
Length = 182
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 81/159 (50%), Gaps = 26/159 (16%)
Query: 77 EVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMF-HISSIDDLIANSMNILE 135
E+DT L+ Q+ + K++Y+P + ++ +F + +L+ N + I E
Sbjct: 46 ELDTQPLIEQLW---------RAGKRVYLPVLHPFSAGNLLFLNYHPQSELVMNRLKIHE 96
Query: 136 PAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERN 195
P +D DV+ + +D+ + P +AFD G+RLG GGG+YD L+ +Q
Sbjct: 97 PK-LDV-----RDVLPLSR-LDVLITPLVAFDEYGQRLGMGGGFYDRTLQNWQHYKT--- 146
Query: 196 WRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGV 234
QP V ++ Q++++ + D+P+ A+V+PS V
Sbjct: 147 --QP--VGYAHDCQLVEK--LPVEEWDIPLPAVVTPSKV 179
>sp|P0AC29|YGFA_ECO57 Uncharacterized protein YgfA OS=Escherichia coli O157:H7 GN=ygfA
PE=3 SV=1
Length = 182
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 81/159 (50%), Gaps = 26/159 (16%)
Query: 77 EVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMF-HISSIDDLIANSMNILE 135
E+DT L+ Q+ + K++Y+P + ++ +F + +L+ N + I E
Sbjct: 46 ELDTQPLIEQLW---------RAGKRVYLPVLHPFSAGNLLFLNYHPQSELVMNRLKIHE 96
Query: 136 PAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERN 195
P +D DV+ + +D+ + P +AFD G+RLG GGG+YD L+ +Q
Sbjct: 97 PK-LDV-----RDVLPLSR-LDVLITPLVAFDEYGQRLGMGGGFYDRTLQNWQHYKT--- 146
Query: 196 WRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGV 234
QP V ++ Q++++ + D+P+ A+V+PS V
Sbjct: 147 --QP--VGYAHDCQLVEK--LPVEEWDIPLPAVVTPSKV 179
>sp|Q89AD6|Y370_BUCBP Uncharacterized protein bbp_370 OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=bbp_370 PE=3 SV=1
Length = 195
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 21/162 (12%)
Query: 28 RSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQI 87
R RK K ++ +R +I K + S + + I CS E+DT L+ ++
Sbjct: 10 RKYFRKLRKKINNKIREQLAISISKKIFYCNILDSVKNIA--IFCSFDGEIDTYPLILKL 67
Query: 88 LQIPNADGDTKTRKKLYVPRVEDKNSHMRMF--HISSIDDLIANSMNILEPAPVDADGNE 145
+ +Y+P + + F ++ + LI N NILEP +
Sbjct: 68 ---------WRQNYNVYLPIINYNYKKILGFMKYLPN-TSLIKNRFNILEPVF------D 111
Query: 146 REDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKY 187
R++ +Q+++ +D+ +P +AFD G RLG GGG+YD L Y
Sbjct: 112 RKNFIQSDD-LDIMFVPLVAFDEFGYRLGMGGGFYDRILINY 152
>sp|P54491|YQGN_BACSU Uncharacterized protein YqgN OS=Bacillus subtilis (strain 168)
GN=yqgN PE=1 SV=1
Length = 187
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 21/136 (15%)
Query: 101 KKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQAN-EPVDLF 159
K++ +P+ M+ + D L +LEP E + N +DL
Sbjct: 68 KQVCIPKCHPDTKKMQFRTYQTDDQLETVYAGLLEPV--------IEKTKEVNPSQIDLM 119
Query: 160 LLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQPLFVALSYSLQIMDEGIISAT 219
++PG+ FD +G R+G GGGYYD +L +Y+ V+L Q+ +
Sbjct: 120 IVPGVCFDVNGFRVGFGGGYYDRYLSEYEGKT----------VSLLLECQLFAH--VPRL 167
Query: 220 PKDMPVDALVSPSGVI 235
P D+PV L++ +I
Sbjct: 168 PHDIPVHKLITEDRII 183
>sp|P44905|Y858_HAEIN Uncharacterized protein HI_0858 OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0858 PE=1 SV=1
Length = 187
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 94/212 (44%), Gaps = 31/212 (14%)
Query: 22 QQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTS 81
Q+++ +R+++RK ++ + + ++ + L + ++ + Y S E+ T
Sbjct: 4 QKRQQIRTEIRKIRANLTALQQHQAEQSVTQHALNLIEQRQAKNIALYFSFDG--EIST- 60
Query: 82 KLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDD--LIANSMNILEPAPV 139
K L Q L + N K +Y+P + H +F + + D + N I EP
Sbjct: 61 KALIQSLWMQN--------KNVYLPVLHPFTKHYLLF-LRYLPDTPMKQNQFGIWEPKL- 110
Query: 140 DADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQP 199
++V+ NE +D+ P +AFD+ G RLG GGG+YD L+ NW+
Sbjct: 111 -----NVQNVLPLNE-LDILFTPLVAFDKKGNRLGMGGGFYDRTLQ---------NWQNK 155
Query: 200 LFVALSYSLQIMDEGIISATPKDMPV-DALVS 230
F+ + + Q + D+P+ D LV
Sbjct: 156 SFIPVGLAYQCQQVENLPTEHWDVPLFDILVG 187
>sp|P75430|MTHFS_MYCPN Probable 5-formyltetrahydrofolate cyclo-ligase OS=Mycoplasma
pneumoniae (strain ATCC 29342 / M129) GN=MPN_348 PE=1
SV=1
Length = 164
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 11/75 (14%)
Query: 156 VDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQPLFVALSYSLQIMDEGI 215
+D FL+P + F++ RLG G GYYD +L + RQ + ++YS Q +G
Sbjct: 99 IDCFLIPLVGFNKDNYRLGFGKGYYDRYLMQLT--------RQQPKIGIAYSFQ---KGD 147
Query: 216 ISATPKDMPVDALVS 230
A P D+ +D +++
Sbjct: 148 FLADPWDVQLDLIIN 162
>sp|P47487|MTHFS_MYCGE Probable 5-formyltetrahydrofolate cyclo-ligase OS=Mycoplasma
genitalium (strain ATCC 33530 / G-37 / NCTC 10195)
GN=MG245 PE=3 SV=1
Length = 165
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 25/134 (18%)
Query: 103 LYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVD------ADGNEREDVMQANEPV 156
LY+P ++++ + + F +D L N + P+ VD D N E + N+ +
Sbjct: 49 LYIP-IKNEVAFLDNF----LDFLKLNKITSCFPSIVDQFNMKFIDQNNNE--INPND-I 100
Query: 157 DLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQPLFVALSYSLQIMDEGII 216
D F +P LAF+++ R+G G GYYD +Y L ++ + + ++Y Q +
Sbjct: 101 DCFFIPLLAFNKANHRIGFGKGYYD----RYLSLTSKKQLK----IGIAYDFQYAE---F 149
Query: 217 SATPKDMPVDALVS 230
+ P D +D ++
Sbjct: 150 TNDPWDYQLDLIIC 163
>sp|Q5QXT8|TYPH_IDILO Thymidine phosphorylase OS=Idiomarina loihiensis (strain ATCC
BAA-735 / DSM 15497 / L2-TR) GN=deoA PE=3 SV=1
Length = 446
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 13/150 (8%)
Query: 58 PWFKSSQRLC-AYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMR 116
P + S+ L + +S V+T+ L++ + Q + +L V + K R
Sbjct: 212 PGYDESRELAQSLVSVGRKLGVETTALITDMNQALGSAAGNAVEVQLAVDYLTGKRRDKR 271
Query: 117 MFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRG 176
+ ++ A S +L GN + QA V+ L GLA +R + +G
Sbjct: 272 LHQVTK-----ALSAELL------VSGNLAKSTDQAEVMVENVLGSGLAAERFAKMVGSL 320
Query: 177 GGYYDTFLKKYQELAKERNWRQPLFVALSY 206
GG +D FL+K + + N R+PL + Y
Sbjct: 321 GGPHD-FLEKSDQYLPQANLRKPLKLPAEY 349
>sp|Q5UQ69|YL504_MIMIV Uncharacterized protein L504 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L504 PE=4 SV=1
Length = 406
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 110 DKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRS 169
D N +R F I SI+DLI S N LE P+ + ED+++A E +D + F+ S
Sbjct: 202 DSNDKIRCFTIMSINDLI--SHNNLE-HPITMEKIPEEDILRAIELIDFYKKEIGLFNSS 258
Query: 170 GRRLGR 175
+ R
Sbjct: 259 NMEISR 264
>sp|P25870|CLH_DICDI Clathrin heavy chain OS=Dictyostelium discoideum GN=chcA PE=1 SV=1
Length = 1694
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 29 SQVRKTLKS-MDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQI 87
++V T+K+ MD +L + ++KIVLE FK+++ L + +A+R D S++ I
Sbjct: 987 TEVSATVKAFMDANLPNELIELLEKIVLEGKEFKTAKELQNLLILTAIR-ADKSRVTDYI 1045
Query: 88 LQIPNADG 95
++ N DG
Sbjct: 1046 NRLDNFDG 1053
>sp|Q80U70|SUZ12_MOUSE Polycomb protein Suz12 OS=Mus musculus GN=Suz12 PE=1 SV=2
Length = 741
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 11/96 (11%)
Query: 82 KLLSQILQIPNADGDTKTRKKLYVP-------RVEDKNSHMRMFHISSIDDLIANSMNIL 134
++ Q L N T+ R L+ P ++ H+++ H I N +
Sbjct: 429 RIFYQFLYNNNTRQQTEARDDLHCPWCTLNCRKLYSLLKHLKLCH----SRFIFNYVYHP 484
Query: 135 EPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSG 170
+ A +D NE D A P D+ PG AF R+G
Sbjct: 485 KGARIDVSINECYDGSYAGNPQDIHRQPGFAFSRNG 520
>sp|Q15022|SUZ12_HUMAN Polycomb protein SUZ12 OS=Homo sapiens GN=SUZ12 PE=1 SV=3
Length = 739
Score = 31.6 bits (70), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 11/96 (11%)
Query: 82 KLLSQILQIPNADGDTKTRKKLYVP-------RVEDKNSHMRMFHISSIDDLIANSMNIL 134
++ Q L N T+ R L+ P ++ H+++ H I N +
Sbjct: 427 RIFYQFLYNNNTRQQTEARDDLHCPWCTLNCRKLYSLLKHLKLCH----SRFIFNYVYHP 482
Query: 135 EPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSG 170
+ A +D NE D A P D+ PG AF R+G
Sbjct: 483 KGARIDVSINECYDGSYAGNPQDIHRQPGFAFSRNG 518
>sp|Q0VA03|SUZ12_XENTR Polycomb protein suz12 OS=Xenopus tropicalis GN=suz12 PE=2 SV=1
Length = 700
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 11/96 (11%)
Query: 82 KLLSQILQIPNADGDTKTRKKLYVP-------RVEDKNSHMRMFHISSIDDLIANSMNIL 134
++ Q L N T+ R L+ P ++ H+++ H I N +
Sbjct: 384 RIFYQFLYNNNTRQQTEARDDLHCPWCTLNCRKLYSLLKHLKLCH----SRFIFNYVYHP 439
Query: 135 EPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSG 170
+ A +D NE D A P D+ PG AF R+G
Sbjct: 440 KGARIDVSINECYDGSYAGNPQDIHRQPGFAFSRNG 475
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,221,040
Number of Sequences: 539616
Number of extensions: 3842873
Number of successful extensions: 9385
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 9361
Number of HSP's gapped (non-prelim): 39
length of query: 247
length of database: 191,569,459
effective HSP length: 114
effective length of query: 133
effective length of database: 130,053,235
effective search space: 17297080255
effective search space used: 17297080255
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)