Query 025859
Match_columns 247
No_of_seqs 230 out of 1093
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 10:21:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025859.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025859hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02812 5-formyltetrahydrofol 100.0 3.2E-56 6.8E-61 382.3 21.4 206 19-235 2-211 (211)
2 PRK10333 5-formyltetrahydrofol 100.0 2.2E-54 4.7E-59 363.1 20.3 180 31-237 2-182 (182)
3 PF01812 5-FTHF_cyc-lig: 5-for 100.0 1.7E-53 3.6E-58 358.3 16.4 183 24-231 1-186 (186)
4 TIGR02727 MTHFS_bact 5,10-meth 100.0 3E-52 6.4E-57 349.8 19.9 180 24-231 1-181 (181)
5 KOG3093 5-formyltetrahydrofola 100.0 2.4E-51 5.3E-56 335.6 15.2 196 18-232 2-200 (200)
6 COG0212 5-formyltetrahydrofola 100.0 3.8E-49 8.3E-54 333.5 20.9 186 22-237 3-190 (191)
7 KOG4410 5-formyltetrahydrofola 99.7 2.1E-16 4.6E-21 137.8 11.1 189 19-239 29-240 (396)
8 KOG0967 ATP-dependent DNA liga 65.4 1.7 3.6E-05 43.1 -0.6 77 157-247 560-640 (714)
9 PRK01175 phosphoribosylformylg 65.2 13 0.00029 32.9 5.1 59 154-218 47-110 (261)
10 TIGR02910 sulfite_red_A sulfit 54.4 1.2E+02 0.0025 28.1 9.4 133 79-233 9-162 (334)
11 PRK13146 hisH imidazole glycer 44.2 9.3 0.0002 32.5 0.6 53 154-213 40-92 (209)
12 COG1332 CRISPR system related 42.8 8.1 0.00017 36.0 -0.0 16 171-186 303-318 (369)
13 PF12434 Malate_DH: Malate deh 33.9 55 0.0012 18.8 2.4 12 22-33 12-23 (28)
14 PF10001 DUF2242: Uncharacteri 33.4 22 0.00047 27.8 1.0 13 176-188 106-118 (121)
15 PF08285 DPM3: Dolichol-phosph 32.1 45 0.00097 24.8 2.5 22 9-30 66-87 (91)
16 PLN02530 histidine-tRNA ligase 30.8 26 0.00056 33.8 1.4 67 156-231 327-408 (487)
17 PRK13152 hisH imidazole glycer 28.7 24 0.00052 29.6 0.7 52 155-213 37-88 (201)
18 TIGR01899 cas_TM1807_csm5 CRIS 28.6 19 0.00042 33.5 0.1 15 171-185 299-313 (365)
19 PF06932 DUF1283: Protein of u 27.8 2.4E+02 0.0053 20.5 6.6 49 22-85 27-76 (85)
20 KOG4005 Transcription factor X 25.6 72 0.0016 28.1 3.0 43 1-43 39-87 (292)
21 PRK13659 hypothetical protein; 25.4 3.1E+02 0.0066 20.9 6.2 48 23-85 46-94 (103)
22 cd01740 GATase1_FGAR_AT Type 1 25.2 67 0.0015 27.8 2.8 53 155-213 43-97 (238)
23 PRK13181 hisH imidazole glycer 24.0 31 0.00067 28.8 0.5 50 155-213 37-87 (199)
24 PF03263 Cucumo_2B: Cucumoviru 23.5 3.1E+02 0.0068 20.7 5.6 33 17-49 11-46 (103)
25 cd00773 HisRS-like_core Class 22.9 63 0.0014 28.1 2.2 27 175-208 227-253 (261)
26 PRK13730 conjugal transfer pil 22.8 5E+02 0.011 22.4 7.7 53 35-89 62-114 (212)
27 cd06811 PLPDE_III_yhfX_like Ty 22.5 68 0.0015 29.9 2.5 28 155-182 274-301 (382)
28 TIGR00443 hisZ_biosyn_reg ATP 22.0 59 0.0013 29.3 1.9 25 176-208 281-305 (314)
29 COG0047 PurL Phosphoribosylfor 20.2 1.3E+02 0.0028 26.3 3.5 59 155-218 43-102 (231)
30 PF05920 Homeobox_KN: Homeobox 20.1 1.4E+02 0.003 18.5 2.8 33 4-36 7-39 (40)
No 1
>PLN02812 5-formyltetrahydrofolate cyclo-ligase
Probab=100.00 E-value=3.2e-56 Score=382.33 Aligned_cols=206 Identities=71% Similarity=1.158 Sum_probs=171.5
Q ss_pred hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCC
Q 025859 19 SIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTK 98 (247)
Q Consensus 19 ~~~~~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~l~~~~~~~~~~ 98 (247)
.+.+.|++||++++++|++++++++...|.+|+++|.+++.|+++++|++|+|+++.+||||.+|++.+++
T Consensus 2 ~~~~~K~~lR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~--------- 72 (211)
T PLN02812 2 EIREQKKALRKEVRRALKALSPEQRAQEDAAIQSRLLELPWFKSSKRLCAYVSCAKLREVDTSKILSEILQ--------- 72 (211)
T ss_pred hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcChhhHhcCEEEEEEECCCCCCcCHHHHHHHHHH---------
Confidence 35678999999999999999999999999999999999999999999999999982139999999999998
Q ss_pred CC-cEEEEeeEeCCCCceEEEEccCC-cccccccCCccCCCCCCCCCCchhhhcccCCCccEEEEecceecCCCCccccC
Q 025859 99 TR-KKLYVPRVEDKNSHMRMFHISSI-DDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRG 176 (247)
Q Consensus 99 ~g-k~v~lP~~~~~~~~m~f~~~~~~-~~L~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlilVPglAfD~~G~RLG~G 176 (247)
.| |+|+||+|...+..|.|+.|.+. ++|..|.|||+||.........+.+.+.....+|||||||||||++|+|||||
T Consensus 73 ~g~k~v~lP~~~~~~~~m~f~~~~~~~~~l~~~~~gI~EP~~~~~~~~~~~~~~~~~~~iDliiVP~lafD~~G~RLG~G 152 (211)
T PLN02812 73 NPDKRLYVPRVEDKNSNMRMLHITDMADDLVANSMNILEPTPVDADGNPREDVLQAPEPLDLLLLPGLAFDRSGRRLGRG 152 (211)
T ss_pred cCCcEEEEeEEecCCCeEEEEEeCCccccccCCCCCccCCCccccccccccccccCCCCCCEEEeCceEECCCCCcCcCC
Confidence 89 99999999865456999999986 78999999999997532111000001112467899999999999999999999
Q ss_pred CchHhhhhhhhhhHHhhhccCCccEEEEeecccccc--CCCCCCCCCCccCCEEEeCCcEE
Q 025859 177 GGYYDTFLKKYQELAKERNWRQPLFVALSYSLQIMD--EGIISATPKDMPVDALVSPSGVI 235 (247)
Q Consensus 177 gGyYDR~L~~~~~~~~~~~~~~~~~igl~~~~Q~~d--~~~lP~e~hDi~ld~iiTe~~ii 235 (247)
||||||||+.++......++..+.+|||||++|+++ + ||+|+||++||+||||+|+|
T Consensus 153 gGyYDR~L~~~~~~~~~~~~~~~~~igla~~~Q~~~~~~--iP~e~hD~~ld~iiTe~~vi 211 (211)
T PLN02812 153 GGYYDTFLSKYQELAKEKGWKQPLLVALSYSPQILDEGS--VPVDETDVLVDALVTPSGVI 211 (211)
T ss_pred CchHHHHHHHhhhhhccccCCCceEEEEeeheeeECCCC--CCCccccccCCEEEcCCcCC
Confidence 999999999875210001122466899999999999 8 99999999999999999974
No 2
>PRK10333 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional
Probab=100.00 E-value=2.2e-54 Score=363.12 Aligned_cols=180 Identities=24% Similarity=0.453 Sum_probs=160.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhcCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCCCCcEEEEeeEeC
Q 025859 31 VRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVED 110 (247)
Q Consensus 31 ~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~l~~~~~~~~~~~gk~v~lP~~~~ 110 (247)
++++|++++++++...|++|+++|.+++.|+++++|++|+|++ +||||.+|++.+++ .||+|+||+|.+
T Consensus 2 ~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~---------~gk~v~lP~v~~ 70 (182)
T PRK10333 2 IRQRRRALTPEQQQEMGQQAATRMMTYPPVVMAHTVAVFLSFD--GELDTQPLIEQLWR---------AGKRVYLPVLHP 70 (182)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEEcCCC--CCcCHHHHHHHHHH---------CCCEEEEeEEec
Confidence 5788999999999999999999999999999999999999998 79999999999998 899999999975
Q ss_pred C-CCceEEEEccCCcccccccCCccCCCCCCCCCCchhhhcccCCCccEEEEecceecCCCCccccCCchHhhhhhhhhh
Q 025859 111 K-NSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQE 189 (247)
Q Consensus 111 ~-~~~m~f~~~~~~~~L~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlilVPglAfD~~G~RLG~GgGyYDR~L~~~~~ 189 (247)
. ...|.|+.|.+.++|++|+|||+||..... . ......+|+|||||||||++|+|||||||||||||+.++.
T Consensus 71 ~~~~~m~f~~~~~~~~l~~~~~gI~EP~~~~~------~-~~~~~~iDlviVP~laFD~~G~RLG~GgGyYDR~L~~~~~ 143 (182)
T PRK10333 71 FSAGNLLFLNYHPQSELVMNRLKIHEPKLDVR------D-VLPLSRLDVLITPLVAFDEYGQRLGMGGGFYDRTLQNWQH 143 (182)
T ss_pred CCCCEEEEEECCCCCccccCCCCCCCCCcccc------c-cCCcccCCEEEeCceEECCCCCcccCCcchHHHHHHHhcc
Confidence 4 246999999998999999999999975311 0 1234678999999999999999999999999999998753
Q ss_pred HHhhhccCCccEEEEeeccccccCCCCCCCCCCccCCEEEeCCcEEEc
Q 025859 190 LAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVIPI 237 (247)
Q Consensus 190 ~~~~~~~~~~~~igl~~~~Q~~d~~~lP~e~hDi~ld~iiTe~~ii~~ 237 (247)
..+.+||+||++|++++ ||+|+||++||+||||++++++
T Consensus 144 -------~~~~~igla~~~Q~~~~--ip~e~hD~~ld~iiTe~~~~~~ 182 (182)
T PRK10333 144 -------YKTQPVGYAHDCQLVEK--LPVEEWDIPLPAVVTPSKVWEW 182 (182)
T ss_pred -------cCCcEEEEeeeeEEeCC--cCCCcccCcCCEEEeCCeEEeC
Confidence 13468999999999999 9999999999999999999874
No 3
>PF01812 5-FTHF_cyc-lig: 5-formyltetrahydrofolate cyclo-ligase family; InterPro: IPR002698 5-formyltetrahydrofolate cyclo-ligase or methenyl-THF synthetase 6.3.3.2 from EC catalyses the interchange of 5-formyltetrahydrofolate (5-FTHF) to 5-10-methenyltetrahydrofolate, this requires ATP and Mg2+ []. 5-FTHF is used in chemotherapy where it is clinically known as Leucovorin [].; GO: 0005524 ATP binding, 0030272 5-formyltetrahydrofolate cyclo-ligase activity, 0009396 folic acid-containing compound biosynthetic process; PDB: 1WKC_A 1SBQ_A 1U3G_A 1U3F_B 1YDM_B 1SOU_A 2JCB_B 3HY6_A 3HY4_A 3HXT_A ....
Probab=100.00 E-value=1.7e-53 Score=358.25 Aligned_cols=183 Identities=36% Similarity=0.664 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCCCCcEE
Q 025859 24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKL 103 (247)
Q Consensus 24 K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~l~~~~~~~~~~~gk~v 103 (247)
|++||++++++|++|+++++...|..|+++|.+++.+++|++|++|+|++ +|+||.+|++.+++ .||+|
T Consensus 1 K~~lR~~~~~~r~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~y~~~~--~Ev~t~~li~~~~~---------~gk~v 69 (186)
T PF01812_consen 1 KKELRKEIRARRRALSPEERAEASQAICERLLALPEYRKAQTIALYLPMG--GEVDTRPLIERALK---------DGKRV 69 (186)
T ss_dssp HHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHCCHHHHCTSEEEE----T--TS---HHHHHHHHH---------TTCEE
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhChhhhhhceEEEccCCC--CCCCHHHHHHHHHH---------cCCeE
Confidence 89999999999999999999999999999999999999999999999998 79999999999999 89999
Q ss_pred EEeeEeCCC---CceEEEEccCCcccccccCCccCCCCCCCCCCchhhhcccCCCccEEEEecceecCCCCccccCCchH
Q 025859 104 YVPRVEDKN---SHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYY 180 (247)
Q Consensus 104 ~lP~~~~~~---~~m~f~~~~~~~~L~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlilVPglAfD~~G~RLG~GgGyY 180 (247)
++|++.... ..|.|+.+...++|.+|.|||+||..... .......+|+|||||||||++|+|||||||||
T Consensus 70 ~lP~~~~~~~~~~~~~~~~~~~~~~l~~~~~gI~EP~~~~~-------~~~~~~~idlvlVP~lafd~~G~RLG~GgGyY 142 (186)
T PF01812_consen 70 YLPRVHPDDGRMRMMEFRRYDSDDPLEKGRFGIPEPDGESP-------PPDPPEEIDLVLVPGLAFDRNGNRLGYGGGYY 142 (186)
T ss_dssp EEEEEETTCTEECEEEEEEESSCGCCEECETTCEEEESTCS-------EEGGGGG-SEEEEE-SEEETTSBEE-SSSTHH
T ss_pred ecceecccccccceeEEeecCCcccccccccCccCCccccc-------cccccccCCEEEeCcEEECCCCCeEecCCCHH
Confidence 999998865 24677888888999999999999976421 11112378999999999999999999999999
Q ss_pred hhhhhhhhhHHhhhccCCccEEEEeeccccccCCCCCCCCCCccCCEEEeC
Q 025859 181 DTFLKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSP 231 (247)
Q Consensus 181 DR~L~~~~~~~~~~~~~~~~~igl~~~~Q~~d~~~lP~e~hDi~ld~iiTe 231 (247)
||||+.++. ....+.+|||||++|+++. ||+|+||++||+||||
T Consensus 143 DR~L~~~~~-----~~~~~~~igl~~~~q~~~~--iP~e~hD~~ld~iiTe 186 (186)
T PF01812_consen 143 DRFLARLPP-----GRKKPLKIGLAFDFQIVDD--IPVEPHDIPLDAIITE 186 (186)
T ss_dssp HHHHHHHTS------SS--EEEEEE-GGGEES-------TTS-B-SEEEET
T ss_pred HhHHHhhhc-----ccCCCeEEEEeehhheeCC--CCCCcccccCCEEEcC
Confidence 999999864 1235789999999999998 9999999999999998
No 4
>TIGR02727 MTHFS_bact 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism.
Probab=100.00 E-value=3e-52 Score=349.76 Aligned_cols=180 Identities=33% Similarity=0.589 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCCCCcEE
Q 025859 24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKL 103 (247)
Q Consensus 24 K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~l~~~~~~~~~~~gk~v 103 (247)
|++||++++++|++++.+++..++.+|+++|.+++.++++++|++|+|++ +|+||.+|++.+++ .||+|
T Consensus 1 K~~lR~~~~~~r~~l~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~Y~~~~--~E~~t~~li~~~~~---------~~k~v 69 (181)
T TIGR02727 1 KKELRKKLLERRKALSSEERKAASEAIAKRLLALIEWKNAKTIALYLPLR--GEVDTRPLIEQLLK---------EGKRV 69 (181)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEEcCCC--CCcCHHHHHHHHHH---------CCCEE
Confidence 68999999999999999999999999999999999999999999999998 79999999999998 89999
Q ss_pred EEeeEeCCC-CceEEEEccCCcccccccCCccCCCCCCCCCCchhhhcccCCCccEEEEecceecCCCCccccCCchHhh
Q 025859 104 YVPRVEDKN-SHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDT 182 (247)
Q Consensus 104 ~lP~~~~~~-~~m~f~~~~~~~~L~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlilVPglAfD~~G~RLG~GgGyYDR 182 (247)
+||++...+ ..|.|..|...++|..|+|||+||..... . ......+|+|||||||||++|+|||||||||||
T Consensus 70 ~lP~~~~~~~~~~~~~~~~~~~~l~~~~~gi~eP~~~~~------~-~~~~~~idlvivP~lafD~~G~RLG~GgGyYDR 142 (181)
T TIGR02727 70 ALPKVDPDGKEMLFFRIWSPSDLLTKGKFGILEPPGDST------E-PVDPDEIDLIIVPGVAFDRRGYRLGYGGGYYDR 142 (181)
T ss_pred EEEEEecCCCceeEEEecCCCCccccCCCCCCCCCCccc------C-cCCcccCCEEEeCceEEcCCCccccCCcchHHH
Confidence 999997654 23566677766689999999999974310 0 123567899999999999999999999999999
Q ss_pred hhhhhhhHHhhhccCCccEEEEeeccccccCCCCCCCCCCccCCEEEeC
Q 025859 183 FLKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSP 231 (247)
Q Consensus 183 ~L~~~~~~~~~~~~~~~~~igl~~~~Q~~d~~~lP~e~hDi~ld~iiTe 231 (247)
||+.++. .+.+|||||++|+++. +|+|+||++||+||||
T Consensus 143 ~L~~~~~--------~~~~igv~~~~q~~~~--lp~e~~Di~ld~iiTe 181 (181)
T TIGR02727 143 FLANLKG--------KTVVVGLAFDFQLVDE--LPREPHDVPVDAIITE 181 (181)
T ss_pred HHHhccc--------CCCEEEEEecceeeCc--cCCCccCccCCEEeCC
Confidence 9998752 2448999999999999 9999999999999997
No 5
>KOG3093 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=100.00 E-value=2.4e-51 Score=335.64 Aligned_cols=196 Identities=40% Similarity=0.735 Sum_probs=176.1
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCC
Q 025859 18 ESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDT 97 (247)
Q Consensus 18 ~~~~~~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~l~~~~~~~~~ 97 (247)
+.+...|+.||+.++..+++|+++.+.++|.+|++.++++++|+++++|++|+||++ +||+|..||+.+++
T Consensus 2 ~~i~~~K~~LR~~lk~~L~ald~e~i~rQs~ai~~kV~e~~~fk~skrvs~YmSm~~-~Ev~T~~Ii~~~fq-------- 72 (200)
T KOG3093|consen 2 DAISATKRLLRRQLKRSLGALDAEIIARQSEAISKKVLELPWFKNSKRVSIYMSMDK-GEVDTGEIIKEAFQ-------- 72 (200)
T ss_pred chHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhhHHHHhcCceEEEEecCc-ccccHHHHHHHHHh--------
Confidence 457788999999999999999999999999999999999999999999999999995 69999999999999
Q ss_pred CCCcEEEEeeEeCCCCceEEEEccCCccc---ccccCCccCCCCCCCCCCchhhhcccCCCccEEEEecceecCCCCccc
Q 025859 98 KTRKKLYVPRVEDKNSHMRMFHISSIDDL---IANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLG 174 (247)
Q Consensus 98 ~~gk~v~lP~~~~~~~~m~f~~~~~~~~L---~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlilVPglAfD~~G~RLG 174 (247)
.||.||+|+|...+..|.++++...+++ ..+.|||++|.+. ..+++.+.....+|||||||||||+.|.|||
T Consensus 73 -~gK~vFiP~~~~~~s~m~Mvr~~~~e~~~~l~~t~w~i~qp~~~----~~re~~~~t~~~lDLiivPGvAFd~~g~RlG 147 (200)
T KOG3093|consen 73 -DGKEVFIPRCTHTSSKMDMVRIDHMEELESLPMTSWGIRQPKPG----GPREDALETGHPLDLIIVPGVAFDRKGARLG 147 (200)
T ss_pred -cCCeEEeeeeecCCCceeEEEeCChHHHhhCcccccCCCCCCCC----CchhhhccCCCcceEEEecccccchhhhhcc
Confidence 8999999999877778999999887554 4578999999764 2455555444579999999999999999999
Q ss_pred cCCchHhhhhhhhhhHHhhhccCCccEEEEeeccccccCCCCCCCCCCccCCEEEeCC
Q 025859 175 RGGGYYDTFLKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPS 232 (247)
Q Consensus 175 ~GgGyYDR~L~~~~~~~~~~~~~~~~~igl~~~~Q~~d~~~lP~e~hDi~ld~iiTe~ 232 (247)
+|+||||+||.++..+. .+.+|.+||+||.+|++.+ ||+++||+.||.||||+
T Consensus 148 hGkGYYD~flkry~~~~---~~~kp~~vgL~l~EQI~~~--IPv~~~Dv~lD~vvt~~ 200 (200)
T KOG3093|consen 148 HGKGYYDDFLKRYQIHA---PEQKPLLVGLCLKEQILSE--IPVEEHDVKLDAVVTED 200 (200)
T ss_pred CCcchHHHHHHHHHHhc---cccCchhhhhhhhHhhccc--CCCCccceeeeEeecCC
Confidence 99999999999998753 5678999999999999998 99999999999999985
No 6
>COG0212 5-formyltetrahydrofolate cyclo-ligase [Coenzyme metabolism]
Probab=100.00 E-value=3.8e-49 Score=333.54 Aligned_cols=186 Identities=32% Similarity=0.570 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCCCCc
Q 025859 22 QQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRK 101 (247)
Q Consensus 22 ~~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~l~~~~~~~~~~~gk 101 (247)
+.|++||++++++|.++++..+...+..+++++..++.+.++++|++|+|++ +|+||.++++.+|+ +||
T Consensus 3 ~~K~~lR~~~~~~r~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ia~y~~~~--~E~~~~~l~~~~l~---------~gk 71 (191)
T COG0212 3 ATKSALRKLLLERRIALSPEERHEADQRIAKLLASLIEVKKAKTIALYVPFN--GEIDTRPLIRQALR---------RGK 71 (191)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccccccEEEEEeccC--CCCCcHHHHHHHHH---------cCC
Confidence 5699999999999999999999999999999999999999999999999998 79999999999998 899
Q ss_pred EEEEeeEeCCCCceEEEEccCC--cccccccCCccCCCCCCCCCCchhhhcccCCCccEEEEecceecCCCCccccCCch
Q 025859 102 KLYVPRVEDKNSHMRMFHISSI--DDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGY 179 (247)
Q Consensus 102 ~v~lP~~~~~~~~m~f~~~~~~--~~L~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlilVPglAfD~~G~RLG~GgGy 179 (247)
+|++|++.+ ..+.|..|.+. ..+..+.|||.||..... .+ .+ ..+|+||||+||||++|+||||||||
T Consensus 72 ~l~lP~~~~--~~~~f~~~~~~~~~~~~~~~~gi~eP~~~~~------~~-~~-~~iDlvlvP~Vafd~~G~RLG~GgGy 141 (191)
T COG0212 72 RLLLPKLRD--YKLLFLRYIPDPLQPLIKNRFGILEPGEYGR------KI-PP-PEIDLVLVPLVAFDKQGYRLGYGGGY 141 (191)
T ss_pred EEEEeEEEc--CcceeEEecCCCCcccccccccccCCCccCC------cc-CC-CcCCEEEeCceeECCCCccccCCCch
Confidence 999999986 34778888887 888899999999976421 11 12 67899999999999999999999999
Q ss_pred HhhhhhhhhhHHhhhccCCccEEEEeeccccccCCCCCCCCCCccCCEEEeCCcEEEc
Q 025859 180 YDTFLKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVIPI 237 (247)
Q Consensus 180 YDR~L~~~~~~~~~~~~~~~~~igl~~~~Q~~d~~~lP~e~hDi~ld~iiTe~~ii~~ 237 (247)
|||||+.+. +.++.+||+||+||+++. +|.|+||++||.||||++++++
T Consensus 142 YDR~la~~~-------~~~~~~ig~~~~~Q~v~~--lP~e~hDv~ld~ivt~~~~~~~ 190 (191)
T COG0212 142 YDRYLANLR-------GRKTPTVGIAYDCQLVDH--LPREPHDVPLDAIVTEEGVIRC 190 (191)
T ss_pred HHHHHHhhc-------cCCCCEEEEEEeeeeecc--CCCCcccCcccEEEeCCceEec
Confidence 999999985 135789999999999999 9999999999999999999986
No 7
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=99.68 E-value=2.1e-16 Score=137.80 Aligned_cols=189 Identities=21% Similarity=0.290 Sum_probs=133.4
Q ss_pred hHHHHHHHHHHHHHHHHhc----CCHHHH------HHHHHHHHHHHhcCcCccCCCeEEEEeeCCCCCCCChHHHHHHHH
Q 025859 19 SIFQQKRILRSQVRKTLKS----MDPSLR------SHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQIL 88 (247)
Q Consensus 19 ~~~~~K~~LR~~~~~~R~~----l~~~~~------~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~l 88 (247)
++...|..+|.+++....+ +++.-. ...+.++|+.+.++..|+.|+.|-+-.. -.+..+...+|
T Consensus 29 d~~~~k~~iR~q~W~~me~~n~a~~prpvhhRIPnFvGa~~Aa~~~a~ld~F~~Aq~vKVnpD------~pl~~~r~L~L 102 (396)
T KOG4410|consen 29 DIEPTKRSIRVQTWKKMEEGNVAIGPRPVHHRIPNFVGADKAAALFANLDEFKKAQHVKVNPD------RPLHEFRELAL 102 (396)
T ss_pred CcchhHHHHHHHHHHHHhhcccccCCcchhhcCccccchHHHHHHhhhhHHHhhcceeecCCC------chHHHHHHHHh
Confidence 5777899999999987543 222211 1346677888889999999999877532 23556666666
Q ss_pred hCCCCCCCCCCCcEEEEeeEeCCCCceEEEEccCCcc-----ccc--ccCCcc---CCCCCCCCCCchhhhcccCCCccE
Q 025859 89 QIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDD-----LIA--NSMNIL---EPAPVDADGNEREDVMQANEPVDL 158 (247)
Q Consensus 89 ~~~~~~~~~~~gk~v~lP~~~~~~~~m~f~~~~~~~~-----L~~--g~~gI~---EP~~~~~~~~~~~~~~~~~~~iDl 158 (247)
. ..|++++|....... .|..++...+ +.. ..-|+. .+.. +.....+||
T Consensus 103 ~---------~~Ksll~PspRlrtg--lf~kv~~~~~ate~i~~~c~tsqgv~ky~~~IG-----------LDs~lkvDl 160 (396)
T KOG4410|consen 103 L---------ADKSLLLPSPRLRTG--LFLKVDVLADATEEIKKECLTSQGVQKYRSEIG-----------LDSGLKVDL 160 (396)
T ss_pred h---------cccceecCCchhhcc--eeeeeccCCCCcHHHHHHHHhhhhHHHhCcccc-----------cccCceEEE
Confidence 6 679999998765432 2555554311 110 112221 1222 122346899
Q ss_pred EEEecceecCCCCccccCCchHhhhhhhhhhHHhhhccCCccEEEEeeccccccCCCCCC---CCCCccCCEEEeCCcEE
Q 025859 159 FLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQPLFVALSYSLQIMDEGIISA---TPKDMPVDALVSPSGVI 235 (247)
Q Consensus 159 ilVPglAfD~~G~RLG~GgGyYDR~L~~~~~~~~~~~~~~~~~igl~~~~Q~~d~~~lP~---e~hDi~ld~iiTe~~ii 235 (247)
|+|..||+++.|+|||.|-||-|--...+...+ ......+.|.++++||+||. ||. +.||+|||+|.||+++|
T Consensus 161 vViGSVavs~~G~RiGkGeGfAdLeygmli~mG--Ai~~~TpvVTiVHDcQvVD~--iP~el~~~hD~pVDiI~TPTrvI 236 (396)
T KOG4410|consen 161 VVIGSVAVSREGYRIGKGEGFADLEYGMLIEMG--AITPKTPVVTIVHDCQVVDS--IPPELFQKHDTPVDIIATPTRVI 236 (396)
T ss_pred EEEeeEEecccceeeccCCchhhhhhHHHHHhc--ccCCCCceEEEEecceeecc--CCHHHHhhcCCCccEEeccceEE
Confidence 999999999999999999999998888776543 23345678999999999999 987 49999999999999999
Q ss_pred Eccc
Q 025859 236 PISA 239 (247)
Q Consensus 236 ~~~~ 239 (247)
+...
T Consensus 237 ~t~~ 240 (396)
T KOG4410|consen 237 RTPK 240 (396)
T ss_pred ecCC
Confidence 9853
No 8
>KOG0967 consensus ATP-dependent DNA ligase I [Replication, recombination and repair]
Probab=65.35 E-value=1.7 Score=43.08 Aligned_cols=77 Identities=21% Similarity=0.310 Sum_probs=53.2
Q ss_pred cEEEEecceecCCCCccccCCch----HhhhhhhhhhHHhhhccCCccEEEEeeccccccCCCCCCCCCCccCCEEEeCC
Q 025859 157 DLFLLPGLAFDRSGRRLGRGGGY----YDTFLKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPS 232 (247)
Q Consensus 157 DlilVPglAfD~~G~RLG~GgGy----YDR~L~~~~~~~~~~~~~~~~~igl~~~~Q~~d~~~lP~e~hDi~ld~iiTe~ 232 (247)
.|-+||-=|+-.+|.|.|.+||| ||--=..+. ..++||-.|+.+.+.+ + .-+.....+-++.
T Consensus 560 slDLv~iga~~G~GrrtG~yg~fLlacyn~dteefq---------siCKigtGFsD~~l~e--~---~~~l~~~~~~~~~ 625 (714)
T KOG0967|consen 560 SLDLVVIGAYYGRGRRTGWYGGFLLACYNPDTEEFQ---------SICKIGTGFSDEFLQE--L---HESLSSTVIDSPK 625 (714)
T ss_pred ceeeeeeeeeeccccccccccceeEEeecCchHHHH---------HHHhhcCCCCHHHHHH--H---HHHhhhccccCcH
Confidence 46678888999999999999998 443333332 2467999999887654 2 1234444556666
Q ss_pred cEEEcccccccccCC
Q 025859 233 GVIPISAAALDRMQF 247 (247)
Q Consensus 233 ~ii~~~~~~~~~~~~ 247 (247)
..|++....+|.+-|
T Consensus 626 ~~y~~d~s~kPd~wf 640 (714)
T KOG0967|consen 626 PYYRFDESLKPDVWF 640 (714)
T ss_pred hhcccCccCCCcccc
Confidence 777777777776654
No 9
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=65.17 E-value=13 Score=32.91 Aligned_cols=59 Identities=15% Similarity=0.320 Sum_probs=35.3
Q ss_pred CCccEEEEecceecCCCCccccCCchHhhhhh----hhhhHHhhhccCCccEEEEeecccccc-CCCCCC
Q 025859 154 EPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLK----KYQELAKERNWRQPLFVALSYSLQIMD-EGIISA 218 (247)
Q Consensus 154 ~~iDlilVPglAfD~~G~RLG~GgGyYDR~L~----~~~~~~~~~~~~~~~~igl~~~~Q~~d-~~~lP~ 218 (247)
.+.|.|++||- |+ .|..++.|..+-.++.. .++... ....+++|+|.-+|++- .+.||-
T Consensus 47 ~~~DgLvipGG-fs-~gD~l~~g~~~~~~l~~~l~~~Ik~f~----~~gkpVLGICnG~QlLa~~GlLpg 110 (261)
T PRK01175 47 SDYDCLVIPGG-FS-AGDYIRAGAIFAARLKAVLRKDIEEFI----DEGYPIIGICNGFQVLVELGLLPG 110 (261)
T ss_pred hhCCEEEECCC-CC-cccccccchhhHHHHHHHHHHHHHHHH----HCCCeEEEECHHHHHHHHCCCCCC
Confidence 46899999994 53 34467777654333321 122111 12346899999999884 346775
No 10
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=54.41 E-value=1.2e+02 Score=28.11 Aligned_cols=133 Identities=17% Similarity=0.206 Sum_probs=69.4
Q ss_pred ChHHHHHHHHhCCCCCCCCCCCcEEEEeeEeC-CC-----CceEEEEccCCcccccccCCccCC------CCCCCCCCch
Q 025859 79 DTSKLLSQILQIPNADGDTKTRKKLYVPRVED-KN-----SHMRMFHISSIDDLIANSMNILEP------APVDADGNER 146 (247)
Q Consensus 79 dt~~li~~~l~~~~~~~~~~~gk~v~lP~~~~-~~-----~~m~f~~~~~~~~L~~g~~gI~EP------~~~~~~~~~~ 146 (247)
++..+++.+.+ ..+|+.|+... .+ ....|..|.+.+++.-+.-+..-| ..+.-..-.+
T Consensus 9 ~l~~ll~~L~~----------~y~v~aPv~~~~~g~~~~~~~i~f~~i~~~~el~~~~~~~~spK~~lfP~~E~L~~f~~ 78 (334)
T TIGR02910 9 EFNLLLQKLNK----------DYKVYAPKALFGKGTFSDTDNIRYQEISGVEEIEFHEKSHFSPKEIILPITETLFYFTE 78 (334)
T ss_pred HHHHHHHHHHh----------CCEEEeeEEEcCCCcccCCCeEEEEEcCChhhcccCCCCCCCchhhccCCcceeEEEEc
Confidence 46678877654 49999999852 21 256788888877776542122111 1110000000
Q ss_pred hhhc-ccCCCccEEEEecceecCCCCc-c--cc-CCchHhhhhhhhhhHHhhhccCCccEEEEee----ccccccCCCCC
Q 025859 147 EDVM-QANEPVDLFLLPGLAFDRSGRR-L--GR-GGGYYDTFLKKYQELAKERNWRQPLFVALSY----SLQIMDEGIIS 217 (247)
Q Consensus 147 ~~~~-~~~~~iDlilVPglAfD~~G~R-L--G~-GgGyYDR~L~~~~~~~~~~~~~~~~~igl~~----~~Q~~d~~~lP 217 (247)
..+. .....-..||. .=+.|-++.. | =| ++||.|-|....+. +...||++= +..+.-. .-
T Consensus 79 ~~~~~~~~~~~~~vif-vRpCDl~ai~~lD~vfl~~~~~D~yY~~rRe--------~~~iV~~~C~~~~~tCFC~S--mG 147 (334)
T TIGR02910 79 DTVQEAETDKKNIIIF-LRSCDINAVKRLDYIYLKNGNEDYYYKRLRE--------KVKFVLIECEESFENCFCVS--MG 147 (334)
T ss_pred CcccccCCCCCcEEEE-EeccchhHHHHHHHHhcCCCCCCHHHHHHHh--------CcEEEEEeCCCCCCCeeEec--cC
Confidence 0000 00111235555 8889988733 2 13 78999999987654 345566532 2222222 33
Q ss_pred CCCCCccCCEEEeCCc
Q 025859 218 ATPKDMPVDALVSPSG 233 (247)
Q Consensus 218 ~e~hDi~ld~iiTe~~ 233 (247)
..+.| -.|..+|+-+
T Consensus 148 t~p~~-g~Dl~lt~~~ 162 (334)
T TIGR02910 148 TNKTD-CYSAAVRFSE 162 (334)
T ss_pred CCCCC-CccEEEEEeC
Confidence 34444 5566777643
No 11
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=44.18 E-value=9.3 Score=32.49 Aligned_cols=53 Identities=19% Similarity=0.230 Sum_probs=29.7
Q ss_pred CCccEEEEecceecCCCCccccCCchHhhhhhhhhhHHhhhccCCccEEEEeeccccccC
Q 025859 154 EPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQPLFVALSYSLQIMDE 213 (247)
Q Consensus 154 ~~iDlilVPglAfD~~G~RLG~GgGyYDR~L~~~~~~~~~~~~~~~~~igl~~~~Q~~d~ 213 (247)
...|.||+||........+.=.--|+.++.+..... ...+.+|+|+-.|++-+
T Consensus 40 ~~~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~~PvlGiC~G~q~l~~ 92 (209)
T PRK13146 40 AAADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLA-------AGRPFLGICVGMQLLFE 92 (209)
T ss_pred cCCCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHHh-------CCCcEEEECHHHHHHhh
Confidence 367999999965432211111111444444443211 23468999999998765
No 12
>COG1332 CRISPR system related protein, RAMP superfamily [Defense mechanisms]
Probab=42.83 E-value=8.1 Score=35.95 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=12.7
Q ss_pred CccccCCchHhhhhhh
Q 025859 171 RRLGRGGGYYDTFLKK 186 (247)
Q Consensus 171 ~RLG~GgGyYDR~L~~ 186 (247)
-+|||||||+-.++-.
T Consensus 303 l~lG~GgG~~skTi~~ 318 (369)
T COG1332 303 LHLGFGGGWRSKTIGI 318 (369)
T ss_pred EEEecccceeeeeeee
Confidence 3799999999777643
No 13
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=33.93 E-value=55 Score=18.82 Aligned_cols=12 Identities=17% Similarity=0.290 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHH
Q 025859 22 QQKRILRSQVRK 33 (247)
Q Consensus 22 ~~K~~LR~~~~~ 33 (247)
+.|.+||+..++
T Consensus 12 ~~r~~lR~AALe 23 (28)
T PF12434_consen 12 DKRAQLRQAALE 23 (28)
T ss_pred HHHHHHHHHHHH
Confidence 445667776554
No 14
>PF10001 DUF2242: Uncharacterized protein conserved in bacteria (DUF2242); InterPro: IPR018718 This family includes putative lipoproteins and uncharacterised proteins.
Probab=33.35 E-value=22 Score=27.83 Aligned_cols=13 Identities=31% Similarity=0.851 Sum_probs=10.3
Q ss_pred CCchHhhhhhhhh
Q 025859 176 GGGYYDTFLKKYQ 188 (247)
Q Consensus 176 GgGyYDR~L~~~~ 188 (247)
-+.||||||..+.
T Consensus 106 ~~~FY~rFF~lv~ 118 (121)
T PF10001_consen 106 DGDFYDRFFQLVE 118 (121)
T ss_pred chhHHHHHHHHHH
Confidence 3689999998753
No 15
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=32.06 E-value=45 Score=24.80 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=16.5
Q ss_pred ChhhhhhhhhhHHHHHHHHHHH
Q 025859 9 NPEEKEHDLESIFQQKRILRSQ 30 (247)
Q Consensus 9 ~~~~~~~~~~~~~~~K~~LR~~ 30 (247)
-|++..+-+.+|.++|+.||++
T Consensus 66 cpeA~~eL~~eI~eAK~dLr~k 87 (91)
T PF08285_consen 66 CPEAAKELQKEIKEAKADLRKK 87 (91)
T ss_pred CHHHHHHHHHHHHHHHHHHHHc
Confidence 4667777777888888888874
No 16
>PLN02530 histidine-tRNA ligase
Probab=30.78 E-value=26 Score=33.82 Aligned_cols=67 Identities=28% Similarity=0.506 Sum_probs=40.6
Q ss_pred ccEEEEecce---------ecCCC-CccccCCchHhhhhhhhhhHHhhhccCCccEEEEeeccccc----c-CCCCCCCC
Q 025859 156 VDLFLLPGLA---------FDRSG-RRLGRGGGYYDTFLKKYQELAKERNWRQPLFVALSYSLQIM----D-EGIISATP 220 (247)
Q Consensus 156 iDlilVPglA---------fD~~G-~RLG~GgGyYDR~L~~~~~~~~~~~~~~~~~igl~~~~Q~~----d-~~~lP~e~ 220 (247)
+|+-+|.|+. |+..| .+-=-|||=||+.+..+.. ...+.||+++...++ + .+.+| .
T Consensus 327 ~Dl~lvrgldYYTGivFe~~~~~~~~~~I~gGGRYD~Li~~fgg-------~~~pAvGFa~g~~~l~~~l~~~g~~p--~ 397 (487)
T PLN02530 327 FDASVVRGLAYYTGIVFEGFDRAGKLRAICGGGRYDRLLSTFGG-------EDTPACGFGFGDAVIVELLKEKGLLP--E 397 (487)
T ss_pred EecccccCccccCceEEEEEecCCCcceeeecccHHHHHHHhCC-------CCCCeeEEEEhHHHHHHHHHhcCCCC--C
Confidence 5777777775 44333 2333489999999998842 235678888874322 1 11133 3
Q ss_pred CCccCCEEEeC
Q 025859 221 KDMPVDALVSP 231 (247)
Q Consensus 221 hDi~ld~iiTe 231 (247)
|..+.|.+|..
T Consensus 398 ~~~~~dVlVi~ 408 (487)
T PLN02530 398 LPHQVDDVVFA 408 (487)
T ss_pred CCCCCcEEEEE
Confidence 66677877654
No 17
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=28.74 E-value=24 Score=29.61 Aligned_cols=52 Identities=15% Similarity=0.285 Sum_probs=31.6
Q ss_pred CccEEEEecceecCCCCccccCCchHhhhhhhhhhHHhhhccCCccEEEEeeccccccC
Q 025859 155 PVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQPLFVALSYSLQIMDE 213 (247)
Q Consensus 155 ~iDlilVPglAfD~~G~RLG~GgGyYDR~L~~~~~~~~~~~~~~~~~igl~~~~Q~~d~ 213 (247)
.+|.||+||.+--....|+-.--|+.+......-. ...+.+|+|+-.|++-.
T Consensus 37 ~~d~lilPG~g~~~~~~~~l~~~~~~~~l~~~~~~-------~~~pvlGiC~G~Q~l~~ 88 (201)
T PRK13152 37 KADKLLLPGVGSFKEAMKNLKELGFIEALKEQVLV-------QKKPILGICLGMQLFLE 88 (201)
T ss_pred CCCEEEECCCCchHHHHHHHHHcCcHHHHHHHHHh-------CCCcEEEECHhHHHHhh
Confidence 46888889987643333333334565554443211 12458999999998864
No 18
>TIGR01899 cas_TM1807_csm5 CRISPR-associated RAMP protein, Csm5 family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm5, for CRISPR/cas Subtype Mtube, protein 5.
Probab=28.58 E-value=19 Score=33.54 Aligned_cols=15 Identities=27% Similarity=0.541 Sum_probs=12.5
Q ss_pred CccccCCchHhhhhh
Q 025859 171 RRLGRGGGYYDTFLK 185 (247)
Q Consensus 171 ~RLG~GgGyYDR~L~ 185 (247)
-|||+|+||+=.++.
T Consensus 299 ~~iG~g~G~~s~t~~ 313 (365)
T TIGR01899 299 LHIGWGGGLRSKTIG 313 (365)
T ss_pred EEeecccceeeeeeE
Confidence 699999999876654
No 19
>PF06932 DUF1283: Protein of unknown function (DUF1283); InterPro: IPR009700 This family consists of several hypothetical proteins of around 115 residues in length, which seem to be specific to Enterobacteria. The function of the family is unknown.
Probab=27.77 E-value=2.4e+02 Score=20.54 Aligned_cols=49 Identities=27% Similarity=0.325 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCcCccCCCeEEEEeeCCCCCCCChHHHHH
Q 025859 22 QQKRILRSQVRKTL-KSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLS 85 (247)
Q Consensus 22 ~~K~~LR~~~~~~R-~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~ 85 (247)
...+.||+++-.+- +.++..+++...+.-|+ .+..|-+|| |++|..-++
T Consensus 27 n~Tr~LR~KvN~r~EKefdK~D~A~D~rd~C~---------~S~N~NAYW------EpnT~RCLD 76 (85)
T PF06932_consen 27 NDTRSLRNKVNKRVEKEFDKYDKAIDARDKCE---------KSLNVNAYW------EPNTLRCLD 76 (85)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHH---------hccccceee------cCCchhhhh
Confidence 34667888887653 33444443333333232 235688998 999976554
No 20
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=25.63 E-value=72 Score=28.11 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=26.1
Q ss_pred CCCCCCCCChhhhh------hhhhhHHHHHHHHHHHHHHHHhcCCHHHH
Q 025859 1 MSQSNDSSNPEEKE------HDLESIFQQKRILRSQVRKTLKSMDPSLR 43 (247)
Q Consensus 1 ~~~~~~~~~~~~~~------~~~~~~~~~K~~LR~~~~~~R~~l~~~~~ 43 (247)
||.|||--+|+.++ .-++.+....|.+|++++.+-.+.+..+|
T Consensus 39 ~~~~~~~~~~~aas~~~rKr~RL~HLS~EEK~~RrKLKNRVAAQtaRDr 87 (292)
T KOG4005|consen 39 ASSSNMDDDNMAASQPKRKRRRLDHLSWEEKVQRRKLKNRVAAQTARDR 87 (292)
T ss_pred cCccccCCCcccccchHHHHHhhcccCHHHHHHHHHHHHHHHHhhhhhH
Confidence 45556655555444 23344445567889999888776665544
No 21
>PRK13659 hypothetical protein; Provisional
Probab=25.38 E-value=3.1e+02 Score=20.86 Aligned_cols=48 Identities=29% Similarity=0.392 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCcCccCCCeEEEEeeCCCCCCCChHHHHH
Q 025859 23 QKRILRSQVRKTL-KSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLS 85 (247)
Q Consensus 23 ~K~~LR~~~~~~R-~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~ 85 (247)
..+.||.++-.+- +.++..++..-.+.-|++ +-.|-+|| |++|..-++
T Consensus 46 ~Tr~LR~KVN~R~EKefDK~D~A~D~rD~C~~---------S~NvNAYW------EPnT~RCLD 94 (103)
T PRK13659 46 DTRSLRQKVNKRVEKEFDKADRAFDNRDKCEQ---------SANINAYW------EPNTLRCLD 94 (103)
T ss_pred HHHHHHHHHhhHHHhhhhHHHHhhhhHHHHhh---------ccccceee------cCCchhhhh
Confidence 4567888887653 445555444333333332 35678998 999986554
No 22
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=25.16 E-value=67 Score=27.76 Aligned_cols=53 Identities=28% Similarity=0.379 Sum_probs=31.5
Q ss_pred CccEEEEecceecCCCCccccCCchHhh--hhhhhhhHHhhhccCCccEEEEeeccccccC
Q 025859 155 PVDLFLLPGLAFDRSGRRLGRGGGYYDT--FLKKYQELAKERNWRQPLFVALSYSLQIMDE 213 (247)
Q Consensus 155 ~iDlilVPglAfD~~G~RLG~GgGyYDR--~L~~~~~~~~~~~~~~~~~igl~~~~Q~~d~ 213 (247)
+.|.||+||- |. -|..++-|..+-.+ .+..++... ....+.+|+|+-+|++-+
T Consensus 43 ~~d~liipGG-~~-~~d~l~~~~~~~~~~~~~~~l~~~~----~~g~pvlGIC~G~QlL~~ 97 (238)
T cd01740 43 DYDGVVLPGG-FS-YGDYLRAGAIAAASPLLMEEVKEFA----ERGGLVLGICNGFQILVE 97 (238)
T ss_pred hCCEEEECCC-CC-cccccccccccccChhHHHHHHHHH----hCCCeEEEECcHHHHHHH
Confidence 5799999995 32 34455555555333 222222211 123568999999998854
No 23
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=23.98 E-value=31 Score=28.83 Aligned_cols=50 Identities=20% Similarity=0.409 Sum_probs=27.3
Q ss_pred CccEEEEeccee-cCCCCccccCCchHhhhhhhhhhHHhhhccCCccEEEEeeccccccC
Q 025859 155 PVDLFLLPGLAF-DRSGRRLGRGGGYYDTFLKKYQELAKERNWRQPLFVALSYSLQIMDE 213 (247)
Q Consensus 155 ~iDlilVPglAf-D~~G~RLG~GgGyYDR~L~~~~~~~~~~~~~~~~~igl~~~~Q~~d~ 213 (247)
++|+||+||..- +..-..+ .-.|+++....... ...+.+|+|+-.|++-.
T Consensus 37 ~~d~lilpG~g~~~~~~~~l-~~~~~~~~i~~~~~--------~~~PvlGiC~G~Qll~~ 87 (199)
T PRK13181 37 GADKVILPGVGAFGQAMRSL-RESGLDEALKEHVE--------KKQPVLGICLGMQLLFE 87 (199)
T ss_pred cCCEEEECCCCCHHHHHHHH-HHCChHHHHHHHHH--------CCCCEEEECHhHHHhhh
Confidence 478999999531 1110011 11245544333221 12457999999998865
No 24
>PF03263 Cucumo_2B: Cucumovirus protein 2B; InterPro: IPR004946 This family of cucumovirus proteins may be long-distance movement proteins. ; PDB: 2ZI0_B 3CZ3_C.
Probab=23.49 E-value=3.1e+02 Score=20.72 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=21.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHH
Q 025859 17 LESIFQQKRILRSQVRKTLKS---MDPSLRSHEDNA 49 (247)
Q Consensus 17 ~~~~~~~K~~LR~~~~~~R~~---l~~~~~~~~s~~ 49 (247)
++.+.+.|+.-|+..++.|+. -|+.++......
T Consensus 11 Larm~Ekkk~rR~~Hk~NRkeRGhKSPSEr~Rs~lr 46 (103)
T PF03263_consen 11 LARMVEKKKQRRRSHKKNRKERGHKSPSERARSELR 46 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHhcCCCCHHHHHHHHHH
Confidence 345667788888888887765 566666555444
No 25
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=22.87 E-value=63 Score=28.12 Aligned_cols=27 Identities=30% Similarity=0.570 Sum_probs=18.7
Q ss_pred cCCchHhhhhhhhhhHHhhhccCCccEEEEeecc
Q 025859 175 RGGGYYDTFLKKYQELAKERNWRQPLFVALSYSL 208 (247)
Q Consensus 175 ~GgGyYDR~L~~~~~~~~~~~~~~~~~igl~~~~ 208 (247)
-|||=||..+..+.. ...+-+|+++..
T Consensus 227 ~~GGRYD~L~~~f~~-------~~~~avGfa~~~ 253 (261)
T cd00773 227 AGGGRYDGLLEEFGG-------EDVPAVGFAIGL 253 (261)
T ss_pred eeccCHHHHHHHhCC-------CCCCeEEEEEcH
Confidence 378999999998632 234567887763
No 26
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=22.84 E-value=5e+02 Score=22.41 Aligned_cols=53 Identities=17% Similarity=0.095 Sum_probs=29.3
Q ss_pred HhcCCHHHHHHHHHHHHHHHhcCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHh
Q 025859 35 LKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQ 89 (247)
Q Consensus 35 R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~l~ 89 (247)
|+.|.+.++...+..+.+.-.+ ..-+.+..+.+|+|+.- -|-.+..++..+-+
T Consensus 62 ~npl~~~d~~~lD~l~~~q~~a-~~~~~~~g~~vFVSfSM-P~~sLk~Ll~qa~~ 114 (212)
T PRK13730 62 ENPLQRSDNHFLDELVRKQQAS-QDGKPRQGALYFVSFSI-PEEGLKRMLGETRH 114 (212)
T ss_pred cCCCCchhHHHHHHHHHHHHHh-hccCCCCceEEEEEcCC-CHHHHHHHHHHHHH
Confidence 3457766665555544443222 22344455667766643 25567777777755
No 27
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=22.47 E-value=68 Score=29.90 Aligned_cols=28 Identities=18% Similarity=0.441 Sum_probs=21.1
Q ss_pred CccEEEEecceecCCCCccccCCchHhh
Q 025859 155 PVDLFLLPGLAFDRSGRRLGRGGGYYDT 182 (247)
Q Consensus 155 ~iDlilVPglAfD~~G~RLG~GgGyYDR 182 (247)
.+-+.++-=+..-.+|.=.|||||||=|
T Consensus 274 kpam~l~s~Is~~~~G~~v~YG~~~~~~ 301 (382)
T cd06811 274 KPAMVYVSEVSHTFGGHSYCYGGGFYRR 301 (382)
T ss_pred cccEEEEEEEEEecCCceEeeCCccccc
Confidence 3445556556666789999999999954
No 28
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=21.98 E-value=59 Score=29.28 Aligned_cols=25 Identities=32% Similarity=0.651 Sum_probs=18.5
Q ss_pred CCchHhhhhhhhhhHHhhhccCCccEEEEeecc
Q 025859 176 GGGYYDTFLKKYQELAKERNWRQPLFVALSYSL 208 (247)
Q Consensus 176 GgGyYDR~L~~~~~~~~~~~~~~~~~igl~~~~ 208 (247)
|||=||..+..+. ...+.||+++..
T Consensus 281 ~GGRYD~L~~~fg--------~~~~AvGfa~~~ 305 (314)
T TIGR00443 281 GGGRYDNLLGRFG--------RPLPATGFALNL 305 (314)
T ss_pred CCccHHHHHHHcC--------CCCCCceEEecH
Confidence 7899999999872 134568888764
No 29
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=20.23 E-value=1.3e+02 Score=26.32 Aligned_cols=59 Identities=22% Similarity=0.375 Sum_probs=33.1
Q ss_pred CccEEEEecceecCCCCccccCCchHhhhhhhhhhHHhhhccCCccEEEEeeccccccC-CCCCC
Q 025859 155 PVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQPLFVALSYSLQIMDE-GIISA 218 (247)
Q Consensus 155 ~iDlilVPglAfD~~G~RLG~GgGyYDR~L~~~~~~~~~~~~~~~~~igl~~~~Q~~d~-~~lP~ 218 (247)
+.|.|++|| +|+ -|.-|+ .|+==.. +.+......-..+..+.+|||--||++-+ +.||-
T Consensus 43 ~~d~vv~pG-GFS-yGDyLr--~Gaiaa~-~~v~~~v~~~a~~g~~vLGICNGfQiL~e~gLlPG 102 (231)
T COG0047 43 DFDGVVLPG-GFS-YGDYLR--AGAIAAI-APVMDEVREFAEKGKPVLGICNGFQILSEAGLLPG 102 (231)
T ss_pred CccEEEEcC-CCC-cccccC--cchHHhh-HHHHHHHHHHHHCCCeEEEEcchhHHHHHcCcCCc
Confidence 578999998 566 355555 5553332 11111111111134578999999998743 35554
No 30
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=20.08 E-value=1.4e+02 Score=18.46 Aligned_cols=33 Identities=15% Similarity=0.093 Sum_probs=21.2
Q ss_pred CCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHh
Q 025859 4 SNDSSNPEEKEHDLESIFQQKRILRSQVRKTLK 36 (247)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~K~~LR~~~~~~R~ 36 (247)
.|.=|+.+|+..-+......++++...+...|+
T Consensus 7 ~nPYPs~~ek~~L~~~tgls~~Qi~~WF~NaRr 39 (40)
T PF05920_consen 7 HNPYPSKEEKEELAKQTGLSRKQISNWFINARR 39 (40)
T ss_dssp TSGS--HHHHHHHHHHHTS-HHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHhHc
Confidence 455677788877666666677788887777664
Done!