Query 025859
Match_columns 247
No_of_seqs 230 out of 1093
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 19:11:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025859.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025859hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hy3_A 5-formyltetrahydrofolat 100.0 7.7E-58 2.6E-62 388.9 21.1 196 17-234 3-201 (203)
2 1ydm_A Hypothetical protein YQ 100.0 5.2E-57 1.8E-61 379.3 14.2 186 23-238 1-186 (187)
3 2jcb_A 5-formyltetrahydrofolat 100.0 1.3E-56 4.5E-61 380.5 16.5 188 19-236 8-195 (200)
4 1sou_A 5,10-methenyltetrahydro 100.0 1.5E-55 5E-60 372.5 16.5 183 24-241 3-185 (194)
5 1wkc_A HB8 TT1367 protein; str 100.0 3.2E-53 1.1E-57 355.4 16.5 173 24-240 3-175 (184)
6 1sbq_A H91_ORF164, 5,10-methen 100.0 3.8E-49 1.3E-53 331.7 14.6 162 22-232 26-189 (189)
7 3cdk_A Succinyl-COA:3-ketoacid 56.4 23 0.00079 29.6 6.3 65 154-230 150-218 (241)
8 3rrl_A Succinyl-COA:3-ketoacid 47.7 37 0.0013 28.4 6.1 67 153-231 149-219 (235)
9 1k6d_A Acetate COA-transferase 45.0 20 0.00067 29.5 4.0 65 154-230 147-215 (220)
10 1f0y_A HCDH, L-3-hydroxyacyl-C 19.5 24 0.00083 29.9 0.1 11 171-181 288-300 (302)
No 1
>3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer, ATP-binding, binding, magnesium, nucleotide-binding; HET: 10F; 1.80A {Homo sapiens} PDB: 3hxt_A* 3hy4_A* 3hy6_A
Probab=100.00 E-value=7.7e-58 Score=388.94 Aligned_cols=196 Identities=30% Similarity=0.553 Sum_probs=167.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCC
Q 025859 17 LESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGD 96 (247)
Q Consensus 17 ~~~~~~~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~l~~~~~~~~ 96 (247)
|+++...|++||++++++|++|+++++..+|.+|+++|.+++.|+++++|++|+|++ +|+||.+||+.+++
T Consensus 3 ~~~~~~~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~------- 73 (203)
T 3hy3_A 3 AAAVSSAKRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQ--DEIETEEIIKDIFQ------- 73 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTCHHHHHCSEEECCCCCT--TSCCCHHHHHHHHH-------
T ss_pred hhHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCHhhhcCCEEEEEcCCC--CCcCHHHHHHHHHH-------
Confidence 567888999999999999999999999999999999999999999999999999998 69999999999998
Q ss_pred CCCCcEEEEeeEeCCCCceEEEEccCCc---ccccccCCccCCCCCCCCCCchhhhcccCCCccEEEEecceecCCCCcc
Q 025859 97 TKTRKKLYVPRVEDKNSHMRMFHISSID---DLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRL 173 (247)
Q Consensus 97 ~~~gk~v~lP~~~~~~~~m~f~~~~~~~---~L~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlilVPglAfD~~G~RL 173 (247)
.||+|+||+|...+..|.|+.|.+.+ .|.+|.|||+||..... ..+.+ ....+|||||||||||++|+||
T Consensus 74 --~gk~v~lP~~~~~~~~m~~~~~~~~~~~~~L~~g~~GI~EP~~~~~----~~~~~-~~~~~DlvlVP~vaFD~~G~RL 146 (203)
T 3hy3_A 74 --RGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQPGEGDV----REEAL-STGGLDLIFMPGLGFDKHGNRL 146 (203)
T ss_dssp --TTCEEEEEEEETTTTEEEEEEECCHHHHTTSCBCTTSCBCCCTTCC----CCBGG-GTTCCSEEEECCSEECTTCCEE
T ss_pred --CCCEEEEEEEecCCCeEEEEEeCChhhhhhccCCCCCCCCCCCccc----ccccc-CccCCCEEEeCCeEECCCCcee
Confidence 89999999998655579999998865 47899999999975311 01111 3457899999999999999999
Q ss_pred ccCCchHhhhhhhhhhHHhhhccCCccEEEEeeccccccCCCCCCCCCCccCCEEEeCCcE
Q 025859 174 GRGGGYYDTFLKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGV 234 (247)
Q Consensus 174 G~GgGyYDR~L~~~~~~~~~~~~~~~~~igl~~~~Q~~d~~~lP~e~hDi~ld~iiTe~~i 234 (247)
|||||||||||+.++.. .+..+.+|||||++|++++ ||+|+||++||+||||+|+
T Consensus 147 G~GgGyYDR~L~~~~~~----~~~~~~~igla~~~Q~~~~--lP~e~hDi~ld~iiTe~~~ 201 (203)
T 3hy3_A 147 GRGKGYYDAYLKRCLQH----QEVKPYTLALAFKEQICLQ--VPVNENDMKVDEVLYEDSS 201 (203)
T ss_dssp CSSSCHHHHHHHHHTTT----CSSCCEEEEECCGGGBCSC--CCCC--CCCCSEEECC---
T ss_pred cCCCchHHHHHHHhhhh----cCCCCeEEEEecHHhccCC--CCCCcccccCCEEEeCCCc
Confidence 99999999999987531 1235778999999999998 9999999999999999986
No 2
>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44, X-RAY, PSI, protein structure initiative; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=5.2e-57 Score=379.28 Aligned_cols=186 Identities=24% Similarity=0.439 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCCCCcE
Q 025859 23 QKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKK 102 (247)
Q Consensus 23 ~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~l~~~~~~~~~~~gk~ 102 (247)
.|++||++++++|++++++++..+|.+|+++|.+++.|++|++|++|+|++ +|+||.+|++.+|+ .||+
T Consensus 1 ~K~~lR~~~~~~r~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~y~~~~--~Evdt~~li~~~~~---------~gk~ 69 (187)
T 1ydm_A 1 MKSQLRKKTLEALSALSNEDILQKTERMYKYLFSLPEWQNAGTIAVTISRG--LEIPTRPVIEQAWE---------EGKQ 69 (187)
T ss_dssp ---CHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTSHHHHTCSEEECCCCCT--TSCCCHHHHHHHHH---------TTCE
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCHHhhhCCEEEEECCCC--CCCCHHHHHHHHHH---------CCCE
Confidence 388999999999999999999999999999999999999999999999998 79999999999999 8999
Q ss_pred EEEeeEeCCCCceEEEEccCCcccccccCCccCCCCCCCCCCchhhhcccCCCccEEEEecceecCCCCccccCCchHhh
Q 025859 103 LYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDT 182 (247)
Q Consensus 103 v~lP~~~~~~~~m~f~~~~~~~~L~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlilVPglAfD~~G~RLG~GgGyYDR 182 (247)
|+||++...+..|.|+.|++.++|++|.|||+||..... . ......+|+|||||||||++|+|||||||||||
T Consensus 70 v~lP~~~~~~~~m~f~~~~~~~~L~~~~~gi~EP~~~~~------~-~~~~~~iDlvivP~vafD~~G~RLG~GgGyYDR 142 (187)
T 1ydm_A 70 VCIPKCHPDTKKMQFRTYQTDDQLETVYAGLLEPVIEKT------K-EVNPSQIDLMIVPGVCFDVNGFRVGFGGGYYDR 142 (187)
T ss_dssp EEEECC---CCCCCEEECCCCTTHHHHHTTSCCCC--CC------C-CCCGGGCCEEECCCSEEETTSCEECCSCCSTTT
T ss_pred EEEeEEecCCCcEEEEEeCCCCccCcCCCCCCCCCCccc------c-cCCccCCCEEEeCCeEECCCCCcccCCccHHHH
Confidence 999998644456999999998899999999999974210 0 112357899999999999999999999999999
Q ss_pred hhhhhhhHHhhhccCCccEEEEeeccccccCCCCCCCCCCccCCEEEeCCcEEEcc
Q 025859 183 FLKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVIPIS 238 (247)
Q Consensus 183 ~L~~~~~~~~~~~~~~~~~igl~~~~Q~~d~~~lP~e~hDi~ld~iiTe~~ii~~~ 238 (247)
||+.++ ..+||+||++|++++ ||+|+||++||+||||+++++|.
T Consensus 143 ~L~~~~----------~~~igla~~~Q~~~~--lP~e~hD~~ld~iiTe~~~~~~~ 186 (187)
T 1ydm_A 143 YLSEYE----------GKTVSLLLECQLFAH--VPRLPHDIPVHKLITEDRIISCF 186 (187)
T ss_dssp GGGTCC----------SEEEEECCGGGEESC--CCCCTTCCCCSEEECSSCEEECC
T ss_pred HHHhCC----------CCEEEEEeHHHhcCC--CCCccccCcCCEEEECCcEEecc
Confidence 999763 257999999999998 99999999999999999999984
No 3
>2jcb_A 5-formyltetrahydrofolate cyclo-ligase family PROT; folate metabolism; HET: ADP; 1.6A {Bacillus anthracis}
Probab=100.00 E-value=1.3e-56 Score=380.49 Aligned_cols=188 Identities=26% Similarity=0.483 Sum_probs=169.7
Q ss_pred hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCC
Q 025859 19 SIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTK 98 (247)
Q Consensus 19 ~~~~~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~l~~~~~~~~~~ 98 (247)
.+.+.|++||++++++|++|+++++..+|.+|+++|.+++.|++|++|++|+|++ +|+||.+|++.+++
T Consensus 8 ~~~~~K~~LR~~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~--------- 76 (200)
T 2jcb_A 8 HVREEKLRLRKQIIEHMNSLSKERYTTLSEQIVFSLYEQKEWAEAKTIGITLSME--NEVNTYPIIEKAWK--------- 76 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTSHHHHHCSEEECCCCCT--TSCCCHHHHHHHHH---------
T ss_pred hhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEECCCC--CCCCHHHHHHHHHH---------
Confidence 4678899999999999999999999999999999999999999999999999998 79999999999999
Q ss_pred CCcEEEEeeEeCCCCceEEEEccCCcccccccCCccCCCCCCCCCCchhhhcccCCCccEEEEecceecCCCCccccCCc
Q 025859 99 TRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178 (247)
Q Consensus 99 ~gk~v~lP~~~~~~~~m~f~~~~~~~~L~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlilVPglAfD~~G~RLG~GgG 178 (247)
.||+|+||++...+..|.|+.|++.++|++|.|||+||..... . ......+|||||||||||++|+|||||||
T Consensus 77 ~gk~v~lP~~~~~~~~m~f~~~~~~~~L~~g~~GI~EP~~~~~------~-~~~~~~iDlvlVP~vAfD~~G~RLG~GgG 149 (200)
T 2jcb_A 77 EGKRVVVPKCNKETRTMSFRQISNFDQLETVYMNLREPIPALT------E-EVNADEIDLQIVPGVAYTERGERIGYGGG 149 (200)
T ss_dssp TTCEEEEEEEETTTTEEEEEEESSGGGEEEEETTEEEECGGGC------E-ECCGGGCSEEECCCSEECTTSCEECSSSC
T ss_pred CCCEEEEeEEEcCCCcEEEEEeCCCcccccCCCCCCCCCCccc------c-cCCccCCCEEEECCeEECCCCCeeccCCc
Confidence 8999999999765567999999998999999999999964210 0 11235789999999999999999999999
Q ss_pred hHhhhhhhhhhHHhhhccCCccEEEEeeccccccCCCCCCCCCCccCCEEEeCCcEEE
Q 025859 179 YYDTFLKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVIP 236 (247)
Q Consensus 179 yYDR~L~~~~~~~~~~~~~~~~~igl~~~~Q~~d~~~lP~e~hDi~ld~iiTe~~ii~ 236 (247)
||||||+.++ ..+||+||++|++++ ||+|+||++||+||||++++.
T Consensus 150 yYDR~La~~~----------~~~igla~~~Q~v~~--lP~e~hDi~ld~iiTe~~~~~ 195 (200)
T 2jcb_A 150 YYDRYLVHYK----------GKTLSLAYSFQMVEH--IPVEPFDKNVEKIITEKGTMV 195 (200)
T ss_dssp HHHHHTTTCC----------SEEEEECCGGGBCSC--CCCCTTCCCCSEEEETTEEEE
T ss_pred hHHHHHhhcC----------CCEEEEEehhhccCC--CCCCccCCcCCEEEECCeEEE
Confidence 9999999763 258999999999998 999999999999999999983
No 4
>1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Aquifex aeolicus} SCOP: c.124.1.6
Probab=100.00 E-value=1.5e-55 Score=372.46 Aligned_cols=183 Identities=30% Similarity=0.519 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCCCCcEE
Q 025859 24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKL 103 (247)
Q Consensus 24 K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~l~~~~~~~~~~~gk~v 103 (247)
|++||++++++|++++++++..+|.+|+++|.+++.|++|++|++|+|++ +|+||.+|++.+++ . |+|
T Consensus 3 K~~lR~~~~~~r~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~y~~~~--~Evdt~~li~~~~~---------~-k~v 70 (194)
T 1sou_A 3 KSELRKKVLHKRINLSEEERRRLSEKVISNLKSLPEFKKSKKVALYCPIK--GEVDLTPLFPEVLK---------E-KEL 70 (194)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCHHHHHCCEEEECCCCS--SCCCCGGGHHHHHH---------H-SEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEECCCC--CCCCHHHHHHHHHH---------c-CCE
Confidence 89999999999999999999999999999999999999999999999998 79999999999998 8 999
Q ss_pred EEeeEeCCCCceEEEEccCCcccccccCCccCCCCCCCCCCchhhhcccCCCccEEEEecceecCCCCccccCCchHhhh
Q 025859 104 YVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTF 183 (247)
Q Consensus 104 ~lP~~~~~~~~m~f~~~~~~~~L~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlilVPglAfD~~G~RLG~GgGyYDR~ 183 (247)
+||++ . +..|.|+.|.+.++|++|.|||+||.. . . ......+|||||||||||++|+||||||||||||
T Consensus 71 ~lP~~-~-~~~m~f~~~~~~~~L~~g~~GI~EP~~-~---~-----~~~~~~iDlvlvP~vafD~~G~RLG~GgGyYDR~ 139 (194)
T 1sou_A 71 ILPKV-E-GNEISLYRVHSPACLGVGAFGIMEPVE-G---E-----RVNPEDVDFIAVPGVAFDLEGYRLGFGKGYYDRL 139 (194)
T ss_dssp EEEEE-S-SSSEEEEEESSSCCCEECSSSCEECCS-S---E-----EECGGGCSEEEECCSCBCSSSCBCCSCCSSHHHH
T ss_pred EEEEe-c-CCeeEEEEECCCCccCCCCCCCCCCCc-c---c-----cCCCCCCCEEEECCeEECCCCceeccCCcHHHHH
Confidence 99998 3 346999999998999999999999963 1 0 1123578999999999999999999999999999
Q ss_pred hhhhhhHHhhhccCCccEEEEeeccccccCCCCCCCCCCccCCEEEeCCcEEEccccc
Q 025859 184 LKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVIPISAAA 241 (247)
Q Consensus 184 L~~~~~~~~~~~~~~~~~igl~~~~Q~~d~~~lP~e~hDi~ld~iiTe~~ii~~~~~~ 241 (247)
|+.++ +.+||+||++|++++ ||+|+||++||+||||++++++....
T Consensus 140 L~~~~----------~~~igla~~~Q~v~~--lP~e~hDi~ld~iiTe~~~~~~~~~~ 185 (194)
T 1sou_A 140 LKRVK----------GLKVGVAYSFQVFER--LPRDAWDIPVDVLVTEKNVRRLRDGR 185 (194)
T ss_dssp HHHCC----------SEEEEECCGGGBCSC--CCCCSCCCCCSEEECSSCEEESCCCC
T ss_pred HHhcC----------CCEEEEEchHhccCC--CCCCcccccCCEEEECCeEEEecCCC
Confidence 99763 257999999999998 99999999999999999999996543
No 5
>1wkc_A HB8 TT1367 protein; structural genomics, riken structural genomics/proteomi initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.124.1.6
Probab=100.00 E-value=3.2e-53 Score=355.35 Aligned_cols=173 Identities=27% Similarity=0.474 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCCCCcEE
Q 025859 24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKL 103 (247)
Q Consensus 24 K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~l~~~~~~~~~~~gk~v 103 (247)
|++||++++++|++++.++ +|.+|+++|.+++.|++|++|++|+|++ +|+||.+|++ |+ . |+|
T Consensus 3 K~~lR~~~~~~r~~l~~~~---~s~~i~~~l~~~~~~~~a~~I~~y~~~~--~Evdt~~li~--~~---------~-k~v 65 (184)
T 1wkc_A 3 KAELRRRARAAWRRLDLKA---LSRAVGAALLPWLRERGFRHILLYHPLP--HELNLLPLME--AY---------P-ARY 65 (184)
T ss_dssp HHHHHHHHHHHHHTSCHHH---HHHHHHHHHHHHHHHHTCCEEECCCCCT--TCCCCTTHHH--HS---------C-CEE
T ss_pred HHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhChhhhcCCEEEEECCCC--CCcCHHHHHH--hh---------c-CCE
Confidence 8999999999999999987 7889999999999999999999999998 7999999999 66 7 999
Q ss_pred EEeeEeCCCCceEEEEccCCcccccccCCccCCCCCCCCCCchhhhcccCCCccEEEEecceecCCCCccccCCchHhhh
Q 025859 104 YVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTF 183 (247)
Q Consensus 104 ~lP~~~~~~~~m~f~~~~~~~~L~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlilVPglAfD~~G~RLG~GgGyYDR~ 183 (247)
+||+|..+ .|.|+.|+ +|.+|.|||+|| ... . .....+|+|||||||||++|+||||||||||||
T Consensus 66 ~lP~~~~~--~m~f~~~~---~L~~~~~gi~EP-~~~--------~-~~~~~iDlvlvP~vafD~~G~RLG~GgGyYDR~ 130 (184)
T 1wkc_A 66 YLPKVAGK--GLTVHPFG---PLAPGPFGLLEP-TTP--------P-EDPRVLDLVVVPGLAFDREGYRLGHGQGFYDRF 130 (184)
T ss_dssp EEEEEETT--EEEEEESC---CBC-------CB-CSC--------C-BCGGGCSEEEECCSEEETTSCEECCSSCHHHHH
T ss_pred EEeEEeCC--ceEEEEec---ccCCCCCCCCCC-CCc--------c-CCCCCCCEEEECcEEECCCCCEeeCCccHHHHH
Confidence 99998643 69999997 899999999999 321 0 123568999999999999999999999999999
Q ss_pred hhhhhhHHhhhccCCccEEEEeeccccccCCCCCCCCCCccCCEEEeCCcEEEcccc
Q 025859 184 LKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVIPISAA 240 (247)
Q Consensus 184 L~~~~~~~~~~~~~~~~~igl~~~~Q~~d~~~lP~e~hDi~ld~iiTe~~ii~~~~~ 240 (247)
|+.++ +.+||+||++|++++ ||+|+||++||+||||+++++++..
T Consensus 131 L~~~~----------~~~igl~~~~Q~~~~--lp~e~hD~~ld~iiT~~~~~~~~~~ 175 (184)
T 1wkc_A 131 LKEVR----------AATVGVVPQALLFPA--LPRDPWDVPVDHLATEAGVEAVKRP 175 (184)
T ss_dssp HHHCC----------SEEEEECCGGGEESC--CCCCTTCCCCSEEEETTEEEECCCC
T ss_pred HHhcC----------CCEEEEEchhhccCC--CCCccccCccCEEEECCEEEEcCCC
Confidence 99763 358999999999998 9999999999999999999999775
No 6
>1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase homolog; MTHFS, 5- formyltetrahydrofolate cyclo-ligase, structural genomics; 2.20A {Mycoplasma pneumoniae} SCOP: c.124.1.6 PDB: 1u3f_A* 1u3g_A*
Probab=100.00 E-value=3.8e-49 Score=331.69 Aligned_cols=162 Identities=23% Similarity=0.389 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCcCcc-CCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCCCC
Q 025859 22 QQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFK-SSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTR 100 (247)
Q Consensus 22 ~~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~-~a~~I~~Y~~~~~~~Evdt~~li~~~l~~~~~~~~~~~g 100 (247)
+.|++||++++++|++++++++..+|.+|+++|.+++.|+ +|++|++|+|++ +|+||.+|++.+|+ .|
T Consensus 26 m~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~L~~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~---------~g 94 (189)
T 1sbq_A 26 MDKNALRKQILQKRMALSTIEKSHLDQKINQKLVAFLTPKPCIKTIALYEPIK--NEVTFVDFFFEFLK---------IN 94 (189)
T ss_dssp CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTCTTCCEEECCCCCT--TSCCCCHHHHHHHH---------HT
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHhHhhCCEEEEECCCC--CCCCHHHHHHHHHH---------cC
Confidence 4599999999999999999999999999999999999999 999999999998 79999999999998 89
Q ss_pred c-EEEEeeEeCCCCceEEEEccCCcccccccCCccCCCCCCCCCCchhhhcccCCCccEEEEecceecCCCCccccCCch
Q 025859 101 K-KLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGY 179 (247)
Q Consensus 101 k-~v~lP~~~~~~~~m~f~~~~~~~~L~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlilVPglAfD~~G~RLG~GgGy 179 (247)
| +|+||++... ..|.|+.|.+. |.. ...+|||||||||||++|+||||||||
T Consensus 95 k~~v~lP~~~~~-~~m~f~~~~~~------------~~~--------------~~~iDlvlVP~vAfD~~G~RLG~GgGy 147 (189)
T 1sbq_A 95 QIRAVYPKVISD-TEIIFIDQETN------------TFE--------------PNQIDCFLIPLVGFNKDNYRLGFGKGY 147 (189)
T ss_dssp TCEEEEEEECSS-SCEEEECTTCC------------EEC--------------GGGCCEEEEECSEECTTCCEECCSSCH
T ss_pred CCeEEEeEEccC-CceEEEEeCCC------------CCC--------------cccCCEEEECceEECCCCCEeecCCch
Confidence 9 9999999643 45999998754 211 135799999999999999999999999
Q ss_pred HhhhhhhhhhHHhhhccCCccEEEEeeccccccCCCCCCCCCCccCCEEEeCC
Q 025859 180 YDTFLKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPS 232 (247)
Q Consensus 180 YDR~L~~~~~~~~~~~~~~~~~igl~~~~Q~~d~~~lP~e~hDi~ld~iiTe~ 232 (247)
|||||+.++. .+.+|||||++|+++ ||+|+||++||+||||+
T Consensus 148 YDR~La~~~~--------~~~~igla~~~Q~v~---lP~e~hDiplD~IiTe~ 189 (189)
T 1sbq_A 148 YDRYLMQLTR--------QQPKIGIAYSFQKGD---FLADPWDVQLDLIINDE 189 (189)
T ss_dssp HHHHGGGCCS--------CCCEEEEECGGGBCC---CCCCTTSCCCSEEEECC
T ss_pred HHHHHHhcCC--------CCCEEEEechHheeC---CCCCcccCcCCEEEcCC
Confidence 9999998742 356899999999985 99999999999999995
No 7
>3cdk_A Succinyl-COA:3-ketoacid-coenzyme A transferase subunit A; CO-expressed complex, hetero-tetramer, structural genomics, PSI-2; 2.59A {Bacillus subtilis}
Probab=56.38 E-value=23 Score=29.62 Aligned_cols=65 Identities=12% Similarity=0.206 Sum_probs=43.7
Q ss_pred CCccEEEEecceecCCCC-ccccCCchHhhhhhhhhhHHhhhccCCccEEEEeeccccccCCCCCCCCCCcc---CCEEE
Q 025859 154 EPVDLFLLPGLAFDRSGR-RLGRGGGYYDTFLKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMP---VDALV 229 (247)
Q Consensus 154 ~~iDlilVPglAfD~~G~-RLG~GgGyYDR~L~~~~~~~~~~~~~~~~~igl~~~~Q~~d~~~lP~e~hDi~---ld~ii 229 (247)
..+|+.||=+-..|+.|| .+|...++|+..++...+ .+| +=-.++++.+.++.+.-.+| ||+||
T Consensus 150 l~~DVAlI~a~~aD~~Gn~~~~~~~~~~~~~~a~aAk----------~VI--veVn~~vp~g~l~p~~v~ipg~~VD~VV 217 (241)
T 3cdk_A 150 ITGDVAIVKAWKADTMGNLIFRKTARNFNPIAAMAGK----------ITI--AEAEEIVEAGELDPDHIHTPGIYVQHVV 217 (241)
T ss_dssp CCEEEEEEEEEEEETTCCEECCGGGCTTHHHHHHHEE----------EEE--EEEEEEECTTSSCTTTCSBCGGGCSEEE
T ss_pred CCCcEEEEEeccCCCCCeEEEecCchhhHHHHHHhCC----------EEE--EEEeCCCCccccCCceEEeChHHeEEEE
Confidence 468999999999999998 777788899976665321 233 33344555433554445564 88888
Q ss_pred e
Q 025859 230 S 230 (247)
Q Consensus 230 T 230 (247)
-
T Consensus 218 ~ 218 (241)
T 3cdk_A 218 L 218 (241)
T ss_dssp E
T ss_pred E
Confidence 5
No 8
>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori}
Probab=47.75 E-value=37 Score=28.35 Aligned_cols=67 Identities=12% Similarity=0.134 Sum_probs=45.3
Q ss_pred CCCccEEEEecceecCCCCccc-cCCchHhhhhhhhhhHHhhhccCCccEEEEeeccccccCCCCCCCCCCcc---CCEE
Q 025859 153 NEPVDLFLLPGLAFDRSGRRLG-RGGGYYDTFLKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMP---VDAL 228 (247)
Q Consensus 153 ~~~iDlilVPglAfD~~G~RLG-~GgGyYDR~L~~~~~~~~~~~~~~~~~igl~~~~Q~~d~~~lP~e~hDi~---ld~i 228 (247)
...+|+.||-+-..|+.|+=.- ...++|+..++... ..-++=-.++++.+.++.+.-.+| ||+|
T Consensus 149 a~~~DvAli~a~~aD~~GN~~~~~~~~~~~~~~a~aA------------~~vIveve~iv~~g~l~p~~v~ipg~~VD~V 216 (235)
T 3rrl_A 149 AITGDYGLIKAYKSDTLGNLVFRKTARNFNPLCAMAA------------KICVAEVEEIVPAGELDPDEIHLPGIYVQHI 216 (235)
T ss_dssp CCCEEEEEEECSEEETTCCEECCGGGCTTHHHHHHTE------------EEEEEEESEEECTTSSCTTTCSBCGGGCSEE
T ss_pred CCCCeEEEEEeeecCCCceEEEecCcccccHHHHHhc------------CEEEEEEeeccccCccCCceEEeChHHeEEE
Confidence 4578999999999999997544 44568888776532 123344455666544655666677 9999
Q ss_pred EeC
Q 025859 229 VSP 231 (247)
Q Consensus 229 iTe 231 (247)
|--
T Consensus 217 V~~ 219 (235)
T 3rrl_A 217 YKG 219 (235)
T ss_dssp EEC
T ss_pred EEC
Confidence 864
No 9
>1k6d_A Acetate COA-transferase alpha subunit; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Escherichia coli} SCOP: c.124.1.2
Probab=44.96 E-value=20 Score=29.54 Aligned_cols=65 Identities=11% Similarity=0.186 Sum_probs=42.9
Q ss_pred CCccEEEEecceecCCCC-ccccCCchHhhhhhhhhhHHhhhccCCccEEEEeeccccccCCCCCCCCCCc---cCCEEE
Q 025859 154 EPVDLFLLPGLAFDRSGR-RLGRGGGYYDTFLKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDM---PVDALV 229 (247)
Q Consensus 154 ~~iDlilVPglAfD~~G~-RLG~GgGyYDR~L~~~~~~~~~~~~~~~~~igl~~~~Q~~d~~~lP~e~hDi---~ld~ii 229 (247)
..+|+.||=+-..|+.|| .+|...++|+..++...+ .+|. =-.++++.+.++.+.-.+ -||+||
T Consensus 147 l~~DVAli~a~~aD~~Gn~~~~~~~~~~~~~~a~aA~----------~VIv--eVn~~vp~~~l~p~~v~ipg~~VD~VV 214 (220)
T 1k6d_A 147 LRADLALIRAHRCDTLGNLTYQLSARNFNPLIALAAD----------ITLV--EPDELVETGELQPDHIVTPGAVIDHII 214 (220)
T ss_dssp CCEEEEEEEEEEEETTCCEECCHHHHTTHHHHHHHEE----------EEEE--EEEEEECTTCSCGGGCCBCGGGCCEEE
T ss_pred CCCcEEEEEeecCCCCceEEEecCCccccHHHHHhcC----------EEEE--EEccccCccccCCceEEeChHHeEEEE
Confidence 468999999999999998 777778899998765321 2333 333454432244444455 378887
Q ss_pred e
Q 025859 230 S 230 (247)
Q Consensus 230 T 230 (247)
-
T Consensus 215 ~ 215 (220)
T 1k6d_A 215 V 215 (220)
T ss_dssp C
T ss_pred e
Confidence 4
No 10
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=19.46 E-value=24 Score=29.85 Aligned_cols=11 Identities=36% Similarity=1.214 Sum_probs=6.1
Q ss_pred Ccccc--CCchHh
Q 025859 171 RRLGR--GGGYYD 181 (247)
Q Consensus 171 ~RLG~--GgGyYD 181 (247)
.|||. |+||||
T Consensus 288 g~~G~k~g~Gfy~ 300 (302)
T 1f0y_A 288 NKFGKKTGEGFYK 300 (302)
T ss_dssp TCCBTTTTBSSSB
T ss_pred CCCccccCcEeee
Confidence 44554 566664
Done!