RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 025859
(247 letters)
>3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer,
ATP-binding, binding, magnesium, nucleotide-binding;
HET: 10F; 1.80A {Homo sapiens} PDB: 3hxt_A* 3hy4_A*
3hy6_A
Length = 203
Score = 184 bits (469), Expect = 6e-59
Identities = 60/221 (27%), Positives = 107/221 (48%), Gaps = 25/221 (11%)
Query: 18 ESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALRE 77
++ KR LR ++++ L++M R + + + V+ ++ S+R+ ++S E
Sbjct: 4 AAVSSAKRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQ--DE 61
Query: 78 VDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDD---LIANSMNIL 134
++T +++ I Q G K ++PR +++HM M I S ++ L S NI
Sbjct: 62 IETEEIIKDIFQ----RG-----KICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIP 112
Query: 135 EPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKER 194
+P G+ RE+ + DL +PGL FD+ G RLGRG GYYD +LK+ +
Sbjct: 113 QPGE----GDVREEALSTGGL-DLIFMPGLGFDKHGNRLGRGKGYYDAYLKRC----LQH 163
Query: 195 NWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVI 235
+P +AL++ QI + + DM VD ++
Sbjct: 164 QEVKPYTLALAFKEQICLQ--VPVNENDMKVDEVLYEDSST 202
>2jcb_A 5-formyltetrahydrofolate cyclo-ligase family PROT; folate
metabolism; HET: ADP; 1.6A {Bacillus anthracis}
Length = 200
Score = 176 bits (448), Expect = 9e-56
Identities = 53/221 (23%), Positives = 98/221 (44%), Gaps = 30/221 (13%)
Query: 15 HDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSA 74
H + ++K LR Q+ + + S+ + I + E + ++ + +S
Sbjct: 4 HHHHHVREEKLRLRKQIIEHMNSLSKERYTTLSEQIVFSLYEQKEWAEAKTIGITLSME- 62
Query: 75 LREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNIL 134
EV+T ++ + K K++ VP+ + M IS+ D L MN+
Sbjct: 63 -NEVNTYPIIEKAW---------KEGKRVVVPKCNKETRTMSFRQISNFDQLETVYMNLR 112
Query: 135 EPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKER 194
EP P + + A+E DL ++PG+A+ G R+G GGGYYD +L Y
Sbjct: 113 EPIP------ALTEEVNADEI-DLQIVPGVAYTERGERIGYGGGYYDRYLVHY------- 158
Query: 195 NWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVI 235
+ ++L+YS Q+++ I P D V+ +++ G +
Sbjct: 159 ---KGKTLSLAYSFQMVEH--IPVEPFDKNVEKIITEKGTM 194
>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44,
X-RAY, PSI, protein structure initiative; 2.50A
{Bacillus subtilis}
Length = 187
Score = 175 bits (446), Expect = 1e-55
Identities = 47/212 (22%), Positives = 90/212 (42%), Gaps = 30/212 (14%)
Query: 24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
K LR + + L ++ + + K + P ++++ + IS E+ T +
Sbjct: 2 KSQLRKKTLEALSALSNEDILQKTERMYKYLFSLPEWQNAGTIAVTISRG--LEIPTRPV 59
Query: 84 LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADG 143
+ Q + +G K++ +P+ M+ + D L +LEP
Sbjct: 60 IEQAWE----EG-----KQVCIPKCHPDTKKMQFRTYQTDDQLETVYAGLLEPVI----- 105
Query: 144 NEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQPLFVA 203
E+ + ++ DL ++PG+ FD +G R+G GGGYYD +L +Y + V+
Sbjct: 106 -EKTKEVNPSQI-DLMIVPGVCFDVNGFRVGFGGGYYDRYLSEY----------EGKTVS 153
Query: 204 LSYSLQIMDEGIISATPKDMPVDALVSPSGVI 235
L Q+ + P D+PV L++ +I
Sbjct: 154 LLLECQLFAH--VPRLPHDIPVHKLITEDRII 183
>1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI,
protein structure initiative, northeast structural
genomics consortium; NMR {Aquifex aeolicus} SCOP:
c.124.1.6
Length = 194
Score = 152 bits (387), Expect = 1e-46
Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 35/212 (16%)
Query: 24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
K LR +V ++ R + + P FK S+++ Y EVD + L
Sbjct: 3 KSELRKKVLHKRINLSEEERRRLSEKVISNLKSLPEFKKSKKVALYCPIK--GEVDLTPL 60
Query: 84 LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADG 143
++L+ K+L +P+VE + ++ + S L + I+EP
Sbjct: 61 FPEVLK----------EKELILPKVEGN--EISLYRVHSPACLGVGAFGIMEPVE----- 103
Query: 144 NEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQPLFVA 203
+ + + VD +PG+AFD G RLG G GYYD LK+ + L V
Sbjct: 104 ---GERVNPED-VDFIAVPGVAFDLEGYRLGFGKGYYDRLLKRV----------KGLKVG 149
Query: 204 LSYSLQIMDEGIISATPKDMPVDALVSPSGVI 235
++YS Q+ + + D+PVD LV+ V
Sbjct: 150 VAYSFQVFER--LPRDAWDIPVDVLVTEKNVR 179
>1wkc_A HB8 TT1367 protein; structural genomics, riken structural
genomics/proteomi initiative, RSGI, unknown function;
1.70A {Thermus thermophilus} SCOP: c.124.1.6
Length = 184
Score = 138 bits (349), Expect = 5e-41
Identities = 50/218 (22%), Positives = 77/218 (35%), Gaps = 44/218 (20%)
Query: 24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
K LR + R + +D S A+ +L + + + Y E++ L
Sbjct: 3 KAELRRRARAAWRRLDLKALSR---AVGAALLPWLRERGFRHILLYHPLP--HELNLLPL 57
Query: 84 LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADG 143
+ + Y+P+V K H L +LEP
Sbjct: 58 MEAY------------PARYYLPKVAGKG---LTVH--PFGPLAPGPFGLLEPTT----- 95
Query: 144 NEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQPLFVA 203
DL ++PGLAFDR G RLG G G+YD FLK+ + V
Sbjct: 96 ----PPEDPRVL-DLVVVPGLAFDREGYRLGHGQGFYDRFLKEV----------RAATVG 140
Query: 204 LSYSLQIMDEGIISATPKDMPVDALVSPSGVIPISAAA 241
+ + + P D+PVD L + +GV + A
Sbjct: 141 VVPQALLFPA--LPRDPWDVPVDHLATEAGVEAVKRPA 176
>1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase homolog;
MTHFS, 5- formyltetrahydrofolate cyclo-ligase,
structural genomics; 2.20A {Mycoplasma pneumoniae} SCOP:
c.124.1.6 PDB: 1u3f_A* 1u3g_A*
Length = 189
Score = 116 bits (294), Expect = 9e-33
Identities = 43/214 (20%), Positives = 76/214 (35%), Gaps = 49/214 (22%)
Query: 19 SIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAP-WFKSSQRLCAYISCSALRE 77
K LR Q+ + ++ +SH D I + ++ + + Y E
Sbjct: 23 QGHMDKNALRKQILQKRMALSTIEKSHLDQKINQKLVAFLTPKPCIKTIALYEPIK--NE 80
Query: 78 VDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPA 137
V + L+ + + P+V ++ + I N EP
Sbjct: 81 VTFVDFFFEFLK--------INQIRAVYPKVI-SDTEI---------IFIDQETNTFEP- 121
Query: 138 PVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWR 197
N+ D FL+P + F++ RLG G GYYD +L + R
Sbjct: 122 ---------------NQI-DCFLIPLVGFNKDNYRLGFGKGYYDRYLMQLT--------R 157
Query: 198 QPLFVALSYSLQIMDEGIISATPKDMPVDALVSP 231
Q + ++YS Q D A P D+ +D +++
Sbjct: 158 QQPKIGIAYSFQKGD---FLADPWDVQLDLIIND 188
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.0 bits (124), Expect = 8e-08
Identities = 33/173 (19%), Positives = 59/173 (34%), Gaps = 66/173 (38%)
Query: 115 MRMFHISSIDDLIANS---MNILEPAPVDADGNERE-------DVMQANEPVDLFLLPGL 164
M M DL S ++ AD + ++ D++ N PV+L + G
Sbjct: 1631 MGM-------DLYKTSKAAQDVWN----RADNHFKDTYGFSILDIVINN-PVNLTIHFGG 1678
Query: 165 AFDRSGRRLGRGGGY----YDTFLK---KYQELAKERN-------WR------------Q 198
G+R+ Y ++T + K +++ KE N +R Q
Sbjct: 1679 E---KGKRIREN--YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ 1733
Query: 199 PLFVALSYSL--QIMDEGIISATPKDMPV--------DALVSPSGVIPISAAA 241
P + + + +G+I P D AL S + V+ I +
Sbjct: 1734 PALTLMEKAAFEDLKSKGLI---PADATFAGHSLGEYAALASLADVMSIESLV 1783
Score = 30.0 bits (67), Expect = 0.80
Identities = 31/266 (11%), Positives = 69/266 (25%), Gaps = 81/266 (30%)
Query: 2 SQSNDSSNPEEKEHDLESIFQ--QKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPW 59
S + S + + L + L + ++ L D + K
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEFENCYLEG---NDIHALAAKLLQENDTTLVKT---KEL 122
Query: 60 FKSSQRLCAYISCSALREVDT----SKLLSQILQIPNADGDTKTRKKLYV---------P 106
K + + S L + +G+ + L
Sbjct: 123 IK-----NYITARIMAKRPFDKKSNSALFRAV-----GEGNAQ----LVAIFGGQGNTDD 168
Query: 107 RVEDKNSHMR-MFHISS--IDDLIANSMNILEP---APVDADGNERE--DVMQ-----AN 153
E+ +R ++ + DLI S L +DA+ + ++++ +N
Sbjct: 169 YFEE----LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 154 EPVDLFL------LPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQPLFVALSYS 207
P +L P + L Y AK + +
Sbjct: 225 TPDKDYLLSIPISCPLIGV---------------IQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 208 LQIMDEGIISATPKDMPVDALVSPSG 233
+G+++A ++ +
Sbjct: 270 ATGHSQGLVTA--------VAIAETD 287
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.003
Identities = 38/277 (13%), Positives = 81/277 (29%), Gaps = 85/277 (30%)
Query: 2 SQSNDSSNPEEKEHDLES----IFQQKR------ILRSQVR--KTLKSMDPS---LRSHE 46
S+S+ SSN + + H +++ + + K +L + V+ K + + S L +
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-VQNAKAWNAFNLSCKILLTTR 273
Query: 47 DNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVP 106
+ + A ++ + L + LL + L D +P
Sbjct: 274 FKQVTDFLSAA----TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD----------LP 319
Query: 107 RVEDKNS--HMRMF------HISSID-----------DLIANSMNILEPA---------- 137
R + + + +++ D +I +S+N+LEPA
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 138 --PVDAD-----------GNEREDVMQ-ANEPVDLFL-----------LPGLAFDRSGRR 172
P A + DVM N+ L +P + + +
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 173 LGRGGGYYDTFLKKYQELAKERNWRQPLFVALSYSLQ 209
+ + + Y + Y
Sbjct: 440 ENE-YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
Score = 32.1 bits (72), Expect = 0.16
Identities = 29/190 (15%), Positives = 64/190 (33%), Gaps = 53/190 (27%)
Query: 67 CAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHM-RMFHISSIDD 125
C + + + + + + I+ +A + T + + + K M + F +++
Sbjct: 35 CKDVQ-DMPKSILSKEEIDHIIMSKDA--VSGTLRLFWT--LLSKQEEMVQKF----VEE 85
Query: 126 LIANSMNIL---------EPAPVDADGNEREDVMQ-ANEPVDLFLLP----------GLA 165
++ + L +P+ + E+ D + N+ + + L
Sbjct: 86 VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145
Query: 166 FDRSGRRL---GRGG-GYYDTFLKKYQELAKERNWRQPLFVALSYSLQI-MDEGI--ISA 218
R + + G G G K +A + V LSY +Q MD I ++
Sbjct: 146 ELRPAKNVLIDGVLGSG------K--TWVALD--------VCLSYKVQCKMDFKIFWLNL 189
Query: 219 TPKDMPVDAL 228
+ P L
Sbjct: 190 KNCNSPETVL 199
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.21
Identities = 6/26 (23%), Positives = 16/26 (61%)
Query: 32 RKTLKSMDPSLRSHEDNAIQKIVLEA 57
++ LK + SL+ + D++ + ++A
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKA 44
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.375
Gapped
Lambda K H
0.267 0.0546 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,688,375
Number of extensions: 214947
Number of successful extensions: 429
Number of sequences better than 10.0: 1
Number of HSP's gapped: 398
Number of HSP's successfully gapped: 17
Length of query: 247
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 156
Effective length of database: 4,160,982
Effective search space: 649113192
Effective search space used: 649113192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.8 bits)