RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 025859
         (247 letters)



>d1soua_ c.124.1.6 (A:) Hypothetical protein aq_1731 {Aquifex
           aeolicus [TaxId: 63363]}
          Length = 194

 Score = 81.8 bits (201), Expect = 8e-20
 Identities = 51/212 (24%), Positives = 82/212 (38%), Gaps = 35/212 (16%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           K  LR +V     ++    R      +   +   P FK S+++  Y       EVD + L
Sbjct: 3   KSELRKKVLHKRINLSEEERRRLSEKVISNLKSLPEFKKSKKVALYCPIK--GEVDLTPL 60

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADG 143
                         +  K+  +   + + + + ++ + S   L   +  I+EP       
Sbjct: 61  ------------FPEVLKEKELILPKVEGNEISLYRVHSPACLGVGAFGIMEPVE----- 103

Query: 144 NEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQPLFVA 203
                     E VD   +PG+AFD  G RLG G GYYD  LK            + L V 
Sbjct: 104 ----GERVNPEDVDFIAVPGVAFDLEGYRLGFGKGYYDRLLK----------RVKGLKVG 149

Query: 204 LSYSLQIMDEGIISATPKDMPVDALVSPSGVI 235
           ++YS Q+ +   +     D+PVD LV+   V 
Sbjct: 150 VAYSFQVFER--LPRDAWDIPVDVLVTEKNVR 179


>d1wkca_ c.124.1.6 (A:) Hypothetical protein TTHA1611 {Thermus
           thermophilus [TaxId: 274]}
          Length = 175

 Score = 78.0 bits (191), Expect = 2e-18
 Identities = 45/214 (21%), Positives = 72/214 (33%), Gaps = 44/214 (20%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           K  LR + R   + +D    S    A+   +L     +  + +  Y              
Sbjct: 3   KAELRRRARAAWRRLDLKALSR---AVGAALLPWLRERGFRHILLYHPL----------- 48

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADG 143
                     + +     + Y  R        +   +     L      +LEP     D 
Sbjct: 49  --------PHELNLLPLMEAYPARYYLPKVAGKGLTVHPFGPLAPGPFGLLEPTTPPEDP 100

Query: 144 NEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQPLFVA 203
                       +DL ++PGLAFDR G RLG G G+YD FLK+           +   V 
Sbjct: 101 RV----------LDLVVVPGLAFDREGYRLGHGQGFYDRFLKEV----------RAATVG 140

Query: 204 LSYSLQIMDEGIISATPKDMPVDALVSPSGVIPI 237
           +     +     +   P D+PVD L + +GV  +
Sbjct: 141 VVPQALLFPA--LPRDPWDVPVDHLATEAGVEAV 172


>d1sbqa_ c.124.1.6 (A:) 5,10-methenyltetrahydrofolate synthetase
           homolog MPN348 {Mycoplasma pneumoniae [TaxId: 2104]}
          Length = 164

 Score = 69.5 bits (169), Expect = 2e-15
 Identities = 38/209 (18%), Positives = 69/209 (33%), Gaps = 49/209 (23%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLE-APWFKSSQRLCAYISCSALREVDTSK 82
           K  LR Q+ +   ++    +SH D  I + ++         + +  Y       EV    
Sbjct: 3   KNALRKQILQKRMALSTIEKSHLDQKINQKLVAFLTPKPCIKTIALYEPIK--NEVTFVD 60

Query: 83  LLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDAD 142
              + L         K  +   V      ++ +      +                    
Sbjct: 61  FFFEFL---------KINQIRAVYPKVISDTEIIFIDQETN------------------- 92

Query: 143 GNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQPLFV 202
                        +D FL+P + F++   RLG G GYYD +L +          RQ   +
Sbjct: 93  -------TFEPNQIDCFLIPLVGFNKDNYRLGFGKGYYDRYLMQL--------TRQQPKI 137

Query: 203 ALSYSLQIMDEGIISATPKDMPVDALVSP 231
            ++YS Q  D     A P D+ +D +++ 
Sbjct: 138 GIAYSFQKGD---FLADPWDVQLDLIIND 163


>d1n4ka1 a.118.22.1 (A:436-602) IP3 receptor type 1 binding core,
           domain 2 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 167

 Score = 25.1 bits (55), Expect = 6.4
 Identities = 18/105 (17%), Positives = 42/105 (40%), Gaps = 17/105 (16%)

Query: 4   SNDSSNPEEKEHDLESIFQQKRILRSQVRKTLKSMDPSL-----RSHEDNAIQKIVLEAP 58
           +ND+S        +    ++  I +++ R   K ++  +      ++    + ++V   P
Sbjct: 11  ANDASKVLGS---IAGKLEKGTITQNERRSVTKLLEDLVYFVTGGTNSGQDVLEVVFSKP 67

Query: 59  WFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKL 103
             +  Q+L        +RE +  K + ++LQ P  D       +L
Sbjct: 68  -NRERQKL--------MREQNILKQIFKLLQAPFTDCGDGPMLRL 103


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.375 

Gapped
Lambda     K      H
   0.267   0.0478    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 884,087
Number of extensions: 39664
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 6
Length of query: 247
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 164
Effective length of database: 1,268,006
Effective search space: 207952984
Effective search space used: 207952984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.4 bits)