BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025860
(247 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P56707|SMTA_ASTBI Selenocysteine methyltransferase OS=Astragalus bisulcatus GN=SMTA
PE=1 SV=1
Length = 338
Score = 392 bits (1007), Expect = e-108, Method: Compositional matrix adjust.
Identities = 183/242 (75%), Positives = 212/242 (87%)
Query: 1 MLRRSVEIAREARDMYFERCSKSSCDSVTDDRIPKHRPILVAASVGSYGAYLADGSEYSG 60
+LRRSVEIAREARD+Y++RC++SS D+ D RI K RPIL+A SVGSYGAYLADGSE+SG
Sbjct: 91 LLRRSVEIAREARDLYYQRCAESSSDNGDDSRILKQRPILIAGSVGSYGAYLADGSEFSG 150
Query: 61 NYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFS 120
NYGDAI ETLKDFHRR+VQ+L +S DL+AFE +PNK+EAQAYA+LLEEENI PAWF+
Sbjct: 151 NYGDAIKSETLKDFHRRKVQILADSGVDLLAFEAVPNKLEAQAYADLLEEENIITPAWFA 210
Query: 121 FNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTPPRFISGLILIIKKVTAKPILIYP 180
F SKDG NVVSGDS+ EC SIAESC +VV+VGINCTPPRFI LIL++KKVTAKPI+IYP
Sbjct: 211 FTSKDGNNVVSGDSIEECGSIAESCDKVVAVGINCTPPRFIHDLILLLKKVTAKPIVIYP 270
Query: 181 NSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCRTTPNTIKGIYRTLSNR 240
NSGE YDA RKEW QN+GV+DEDFVSYV KWCE GASLVGGCCRTTP+TI+GIY+ LS+
Sbjct: 271 NSGETYDAIRKEWGQNSGVTDEDFVSYVDKWCESGASLVGGCCRTTPDTIRGIYKILSSG 330
Query: 241 SS 242
S
Sbjct: 331 QS 332
>sp|Q9M1W4|HMT2_ARATH Homocysteine S-methyltransferase 2 OS=Arabidopsis thaliana GN=HMT-2
PE=1 SV=1
Length = 333
Score = 380 bits (976), Expect = e-105, Method: Compositional matrix adjust.
Identities = 179/243 (73%), Positives = 210/243 (86%), Gaps = 3/243 (1%)
Query: 1 MLRRSVEIAREARDMYFERCSKSSCDSVTDDRIPKHRPILVAASVGSYGAYLADGSEYSG 60
+L++SVEIA EAR+ Y+++C SS DD+I K RPILVAASVGSYGAYLADGSEYSG
Sbjct: 94 LLKKSVEIATEARNSYYDKCGTSSS---MDDKILKKRPILVAASVGSYGAYLADGSEYSG 150
Query: 61 NYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFS 120
YGD+IT+E LKDFHRRR+QVL ES DLIAFETIPNKIEAQA+A+LLEE ++KIP WFS
Sbjct: 151 IYGDSITLEKLKDFHRRRLQVLAESGADLIAFETIPNKIEAQAFADLLEEGDVKIPGWFS 210
Query: 121 FNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTPPRFISGLILIIKKVTAKPILIYP 180
FNSKDGVNVVSGDS+ EC SIAE+C++VV+VGINCTPPRFI GL+L I+KVT+KPIL+YP
Sbjct: 211 FNSKDGVNVVSGDSIKECISIAENCEKVVAVGINCTPPRFIEGLVLEIEKVTSKPILVYP 270
Query: 181 NSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCRTTPNTIKGIYRTLSNR 240
NSGE YDADRKEWV+NTGV DEDFVSYV KW + G SL+GGCCRTTP TI+ I++ L NR
Sbjct: 271 NSGESYDADRKEWVENTGVGDEDFVSYVEKWMDAGVSLLGGCCRTTPTTIRAIHKRLVNR 330
Query: 241 SSV 243
S+
Sbjct: 331 RSL 333
>sp|Q9FUM9|HMT2_MAIZE Homocysteine S-methyltransferase 2 OS=Zea mays GN=HMT-2 PE=2 SV=1
Length = 339
Score = 350 bits (897), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 167/239 (69%), Positives = 199/239 (83%), Gaps = 10/239 (4%)
Query: 1 MLRRSVEIAREARDMYF-ERCSKSSCDSVTDDRIPKHRPILVAASVGSYGAYLADGSEYS 59
+L +SVEIA EAR+M+ E KS+ P P+LVAAS+GSYGAYLADGSEYS
Sbjct: 98 LLTKSVEIALEAREMFLKEHLEKST---------PIQHPVLVAASLGSYGAYLADGSEYS 148
Query: 60 GNYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWF 119
G+YG+A T E LKDFHRRR+QVL E+ PDLIAFETIPNK+EA+AY ELLEE NI IPAWF
Sbjct: 149 GDYGEAGTKEFLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAEAYVELLEECNINIPAWF 208
Query: 120 SFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTPPRFISGLILIIKKVTAKPILIY 179
SFNSKDGV++VSGDSL+EC +IA+ C +V +VGINCTPPRFI GLIL I+KVT KPILIY
Sbjct: 209 SFNSKDGVHIVSGDSLIECTTIADKCAKVGAVGINCTPPRFIHGLILSIRKVTDKPILIY 268
Query: 180 PNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCRTTPNTIKGIYRTLS 238
PNSGE YD ++KEWV++TGVSD DFVSYV++WC+ GA L+GGCCRTTPNTI+ I+RTL+
Sbjct: 269 PNSGERYDGEKKEWVESTGVSDGDFVSYVNEWCKDGAVLIGGCCRTTPNTIRAIHRTLN 327
>sp|Q9FUM8|HMT3_MAIZE Homocysteine S-methyltransferase 3 OS=Zea mays GN=HMT-3 PE=2 SV=1
Length = 338
Score = 349 bits (896), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 167/240 (69%), Positives = 200/240 (83%), Gaps = 10/240 (4%)
Query: 1 MLRRSVEIAREARDMYF-ERCSKSSCDSVTDDRIPKHRPILVAASVGSYGAYLADGSEYS 59
+L +SV+IA EAR+M+ E KS+ P PILVAA++GSYGAYLADGSEYS
Sbjct: 98 LLTKSVQIALEAREMFLKEHLEKST---------PIQHPILVAAALGSYGAYLADGSEYS 148
Query: 60 GNYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWF 119
G+YG+A T E LKDFHRRR+QVL E+ PDLIAFETIPNK+EAQAY ELLEE NI IP+W
Sbjct: 149 GDYGEAGTKEFLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEECNINIPSWL 208
Query: 120 SFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTPPRFISGLILIIKKVTAKPILIY 179
SFNSKDGV+VVSGDSL+ECA+IA+ C +V +VGINCTPPRFI GLIL I+KVT KPILIY
Sbjct: 209 SFNSKDGVHVVSGDSLIECATIADKCAKVGAVGINCTPPRFIHGLILSIRKVTDKPILIY 268
Query: 180 PNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCRTTPNTIKGIYRTLSN 239
PNSGE YD ++KEWV++TGVSD DFVSYV++WC+ GA+L+GGCCRTTPNTI+ I+RTL+
Sbjct: 269 PNSGERYDGEKKEWVESTGVSDGDFVSYVNEWCKDGAALIGGCCRTTPNTIRAIHRTLNQ 328
>sp|Q4VNK0|SMTA_BRAOT Selenocysteine Se-methyltransferase OS=Brassica oleracea var.
italica GN=SMT PE=1 SV=1
Length = 346
Score = 343 bits (879), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 167/237 (70%), Positives = 196/237 (82%), Gaps = 5/237 (2%)
Query: 1 MLRRSVEIAREARDMYFERCSKSSCDSVTDDRIPKHRPILVAASVGSYGAYLADGSEYSG 60
+LR+SVEIA EAR Y+++C + K RPILVAASVGSYGA+LADGSEYSG
Sbjct: 99 LLRKSVEIACEARSTYYDKCKDDDDKKIL-----KKRPILVAASVGSYGAFLADGSEYSG 153
Query: 61 NYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFS 120
YGD IT+ETLKDFHRRRVQVL ES D+IAFETIPNK+EAQA+AELL+E KIP WFS
Sbjct: 154 IYGDLITLETLKDFHRRRVQVLAESGADIIAFETIPNKLEAQAFAELLDEGVAKIPGWFS 213
Query: 121 FNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTPPRFISGLILIIKKVTAKPILIYP 180
FNSKDGVNVVSGDS+ EC +IAE+C++VV+VGINCTPPRFI GL+L I KVT+KPIL+YP
Sbjct: 214 FNSKDGVNVVSGDSIKECIAIAEACEKVVAVGINCTPPRFIEGLVLEIAKVTSKPILVYP 273
Query: 181 NSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCRTTPNTIKGIYRTL 237
NSGE YD +RKEWV+NTGV +EDFVSYV KW + G SL+GGCCRTTP TI+ I++ L
Sbjct: 274 NSGERYDPERKEWVENTGVGNEDFVSYVEKWMDAGVSLLGGCCRTTPTTIRAIHKRL 330
>sp|Q8LAX0|HMT3_ARATH Homocysteine S-methyltransferase 3 OS=Arabidopsis thaliana GN=HMT3
PE=1 SV=2
Length = 347
Score = 338 bits (867), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 159/245 (64%), Positives = 200/245 (81%), Gaps = 1/245 (0%)
Query: 1 MLRRSVEIAREARDMYFERCSKSSCDSVTDDRIPKHRPILVAASVGSYGAYLADGSEYSG 60
+LRRSVEI EAR++++ RC+K S D + + RPILVAASVGSYGAYLADGSEYSG
Sbjct: 98 LLRRSVEITYEAREIFYNRCTKGSWDFAYAGKASR-RPILVAASVGSYGAYLADGSEYSG 156
Query: 61 NYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFS 120
YGD+++ ETLKDFHRRRVQ+L +S DLIAFETIPNK+EA+AYA+LLEEE+I IPAWFS
Sbjct: 157 IYGDSVSKETLKDFHRRRVQILAKSGADLIAFETIPNKLEAEAYADLLEEEDIDIPAWFS 216
Query: 121 FNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTPPRFISGLILIIKKVTAKPILIYP 180
F SKDGV+V GDS++ECA +A+SCK VV++GINCT PR+I LI+ ++++T KPI++YP
Sbjct: 217 FTSKDGVSVPRGDSVVECAKVADSCKNVVAIGINCTAPRYIHALIISLRQMTRKPIVVYP 276
Query: 181 NSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCRTTPNTIKGIYRTLSNR 240
NSGE YD K+W+++ G S+EDFVSYVSKW + GASL GGCCRTTPNTI+ I + LS+
Sbjct: 277 NSGEVYDGLNKKWIKSEGESEEDFVSYVSKWRDAGASLFGGCCRTTPNTIRAIAKVLSDE 336
Query: 241 SSVLS 245
S S
Sbjct: 337 PSAAS 341
>sp|Q9FUM7|HMT4_MAIZE Homocysteine S-methyltransferase 4 OS=Zea mays GN=HMT-4 PE=2 SV=1
Length = 342
Score = 297 bits (761), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 145/238 (60%), Positives = 179/238 (75%), Gaps = 9/238 (3%)
Query: 1 MLRRSVEIAREARDMYFERCSKSSCDSVTDDRIPKHRPILVAASVGSYGAYLADGSEYSG 60
+LRRSV +A+EAR ++ +SS P LVAASVGSYGAY ADGSEYSG
Sbjct: 99 LLRRSVHVAQEARRVFAAEGDRSSRRG--------RPPALVAASVGSYGAYRADGSEYSG 150
Query: 61 NYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFS 120
+YG ++T E LK+FHRRR+QVL + PDLIAFETIPNK+EAQ YAELLEE I+IPAWFS
Sbjct: 151 DYGKSMTKEDLKNFHRRRLQVLAGAGPDLIAFETIPNKLEAQVYAELLEENGIRIPAWFS 210
Query: 121 FNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTPPRFISGLILIIKKVTAKPILIYP 180
F SKDGVN SGD + ECA++A+SC RV +VG+NCT PRFI GLIL IKKVT+KPI++YP
Sbjct: 211 FTSKDGVNAASGDPINECAAVADSCPRVDAVGVNCTAPRFIHGLILSIKKVTSKPIVVYP 270
Query: 181 NSGEFYDADRKEWVQNTGVSD-EDFVSYVSKWCEVGASLVGGCCRTTPNTIKGIYRTL 237
NSGE Y A+ EWV + G + +DFVS V +W GA+L+GGCCRT+P T++ I R +
Sbjct: 271 NSGETYVAETNEWVDSDGATGTDDFVSRVGEWRRAGAALIGGCCRTSPATVRAIARAV 328
>sp|A4ZGQ8|HMT1_BRAOT Homocysteine S-methyltransferase 1 OS=Brassica oleracea var.
italica GN=HMT1 PE=1 SV=1
Length = 326
Score = 272 bits (696), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 128/240 (53%), Positives = 172/240 (71%), Gaps = 8/240 (3%)
Query: 1 MLRRSVEIAREARDMYFERCSKSSCDSVTDDRIPKHRPILVAASVGSYGAYLADGSEYSG 60
+L++SV++A EARD ++++ SK+S S + LVAAS+GSYGAYLADGSEYSG
Sbjct: 95 LLQKSVKLAVEARDRFWDKVSKTSGHS--------YNRALVAASIGSYGAYLADGSEYSG 146
Query: 61 NYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFS 120
+YG+ ++++ LKDFHRRR+QVLVE++PDL+AFETIPNK+EAQA ELLEEEN++IPAW
Sbjct: 147 SYGEDVSLDKLKDFHRRRIQVLVEASPDLLAFETIPNKLEAQACVELLEEENVQIPAWIC 206
Query: 121 FNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTPPRFISGLILIIKKVTAKPILIYP 180
F S DG N SG+S EC + +VGINC PP+F+ LI K+T K I++YP
Sbjct: 207 FTSVDGENAPSGESFQECLETLNKSNNICAVGINCAPPQFMDNLIRKFSKLTQKAIVVYP 266
Query: 181 NSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCRTTPNTIKGIYRTLSNR 240
NSGE +D K+W+ + D +F + +KW ++GA L+GGCCRTTP+TIK I R L R
Sbjct: 267 NSGEVWDGKAKKWLPSQCFGDAEFEMFATKWRDLGAKLIGGCCRTTPSTIKAISRDLKRR 326
>sp|Q9SDL7|HMT1_ARATH Homocysteine S-methyltransferase 1 OS=Arabidopsis thaliana GN=HMT-1
PE=1 SV=1
Length = 326
Score = 267 bits (683), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 128/240 (53%), Positives = 168/240 (70%), Gaps = 8/240 (3%)
Query: 1 MLRRSVEIAREARDMYFERCSKSSCDSVTDDRIPKHRPILVAASVGSYGAYLADGSEYSG 60
+L++SVE+A EARD ++E+ SK S S + LVAAS+GSYGAYLADGSEYSG
Sbjct: 95 LLQKSVELAVEARDRFWEKVSKVSGHS--------YNRALVAASIGSYGAYLADGSEYSG 146
Query: 61 NYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFS 120
+YG+ ++++ LKDFHRRR+QVLVE+ PDL+AFETIPNK+EAQA ELLEEE ++IPAW
Sbjct: 147 HYGENVSLDKLKDFHRRRLQVLVEAGPDLLAFETIPNKLEAQACVELLEEEKVQIPAWIC 206
Query: 121 FNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTPPRFISGLILIIKKVTAKPILIYP 180
F S DG SG+S EC + +VGINC PP+FI LI K+T K I++YP
Sbjct: 207 FTSVDGEKAPSGESFEECLEPLNKSNNIYAVGINCAPPQFIENLIRKFAKLTKKAIVVYP 266
Query: 181 NSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCRTTPNTIKGIYRTLSNR 240
NSGE +D K+W+ + D++F + +KW ++GA L+GGCCRTTP+TI I R L R
Sbjct: 267 NSGEVWDGKAKQWLPSQCFGDDEFEMFATKWRDLGAKLIGGCCRTTPSTINAISRDLKRR 326
>sp|Q9FUN0|HMT1_MAIZE Homocysteine S-methyltransferase 1 OS=Zea mays GN=HMT-1 PE=2 SV=1
Length = 323
Score = 260 bits (664), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 124/241 (51%), Positives = 165/241 (68%), Gaps = 8/241 (3%)
Query: 1 MLRRSVEIAREARDMYFERCSKSSCDSVTDDRIPKHRPILVAASVGSYGAYLADGSEYSG 60
+LR SV++A EARD +++ + S P + LVAAS+GSYGAYLADGSEYSG
Sbjct: 89 LLRTSVKLANEARDEFWKSTLRKS--------KPIYNRALVAASIGSYGAYLADGSEYSG 140
Query: 61 NYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFS 120
+YG IT E LKDFHRRR+QVL + PDLIAFE IPN++EAQA ELLEEE ++IP+W
Sbjct: 141 SYGADITAEKLKDFHRRRLQVLASAGPDLIAFEAIPNQMEAQALVELLEEEKVQIPSWIC 200
Query: 121 FNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTPPRFISGLILIIKKVTAKPILIYP 180
F+S DG N+ SG+S +C I + ++V VG+NCTPP+FI G+I +K T K I +YP
Sbjct: 201 FSSVDGKNLCSGESFADCLKILNASEKVAVVGVNCTPPQFIEGIICEFRKQTKKAIAVYP 260
Query: 181 NSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCRTTPNTIKGIYRTLSNR 240
NSGE +D K W+ + + F + +W E GASL+GGCCRTTP+TI+ + + L R
Sbjct: 261 NSGEVWDGRAKRWLPVECLGHKSFDALAKRWQEAGASLIGGCCRTTPSTIRAVSKILKGR 320
Query: 241 S 241
+
Sbjct: 321 T 321
>sp|O31463|HMT_BACSU Homocysteine S-methyltransferase YbgG OS=Bacillus subtilis (strain
168) GN=ybgG PE=4 SV=1
Length = 315
Score = 191 bits (485), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 103/233 (44%), Positives = 149/233 (63%), Gaps = 15/233 (6%)
Query: 1 MLRRSVEIAREARDMYFERCSKSSCDSVTDDRIPKHRPILVAASVGSYGAYLADGSEYSG 60
++ SV IA EARD ++ S+ ++R+ + +PI +AAS+G YGAYLADGSEY G
Sbjct: 88 LIELSVSIAAEARDEFW---------SLEENRLNRPKPI-IAASIGPYGAYLADGSEYRG 137
Query: 61 NYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFS 120
NY AI+ + L +FHR R++ L+E+ D++A ETIP EA+A LL+E + AW S
Sbjct: 138 NY--AISEDELIEFHRPRMKALIEAGADVLACETIPCLTEAKAIVRLLKE-FPETYAWIS 194
Query: 121 FNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTPPRFISGLILIIKKVTAKPILIYP 180
F++KDG+++ G +CAS + +++ ++GINCTP + I LI +KK T+KPI++YP
Sbjct: 195 FSAKDGLHISDGTPAADCASWLDEHRQIAALGINCTPLQHIPSLIEELKKNTSKPIIVYP 254
Query: 181 NSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCRTTPNTIKGI 233
NSGE YD + K W N E + + W E GA L+GGCCRT P I+ I
Sbjct: 255 NSGEQYDPETKTW--NGAACAESYGASARTWHEKGARLIGGCCRTKPENIQEI 305
>sp|Q47690|MMUM_ECOLI Homocysteine S-methyltransferase OS=Escherichia coli (strain K12)
GN=mmuM PE=1 SV=2
Length = 310
Score = 167 bits (424), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 91/233 (39%), Positives = 131/233 (56%), Gaps = 17/233 (7%)
Query: 1 MLRRSVEIAREARDMYFERCSKSSCDSVTDDRIPKHRPILVAASVGSYGAYLADGSEYSG 60
++ +SVE+AR+AR+ Y P+ +LVA SVG YGAYLADGSEY G
Sbjct: 91 LIGKSVELARKAREAYLAEN-------------PQAGTLLVAGSVGPYGAYLADGSEYRG 137
Query: 61 NYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFS 120
+Y +VE + FHR RV+ L+++ DL+A ET+PN E +A AELL + AWFS
Sbjct: 138 DYH--CSVEAFQAFHRPRVEALLDAGADLLACETLPNFSEIEALAELLTAYP-RARAWFS 194
Query: 121 FNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTPPRFISGLILIIKKVTAKPILIYP 180
F +D ++ G L + ++ +VV++GINC + + + +T P+++YP
Sbjct: 195 FTLRDSEHLSDGTPLRDVVALLAGYPQVVALGINCIALENTTAALQHLHGLTVLPLVVYP 254
Query: 181 NSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCRTTPNTIKGI 233
NSGE YDA K W + G Y+ +W GA L+GGCCRTTP I +
Sbjct: 255 NSGEHYDAVSKTW-HHHGEHCAQLADYLPQWQAAGARLIGGCCRTTPADIAAL 306
>sp|Q12525|MHT1_YEAST Homocysteine S-methyltransferase 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MHT1 PE=1 SV=1
Length = 324
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 101/198 (51%), Gaps = 12/198 (6%)
Query: 45 VGSYGAYLADGS-EYSGNYGDAITVETLKDFHRRRVQVLVESAP-DLIAFETIPNKIEAQ 102
+GS G + A S EY+G+YG F + +++ ++ DLI FETIPN E +
Sbjct: 122 IGSIGPWAAHVSCEYTGDYGPHPENIDYYGFFKPQLENFNQNRDIDLIGFETIPNFHELK 181
Query: 103 AYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESC-----KRVVSVGINCTP 157
A +E+ I P + + D + G +L E + + K ++ +G+NC
Sbjct: 182 AILSW-DEDIISKPFYIGLSVDDNSLLRDGTTLEEISVHIKGLGNKINKNLLLMGVNCVS 240
Query: 158 PRFISGLIL--IIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVG 215
S LIL + + + P+L+YPNSGE Y+ K W + T D D+ + V K+ + G
Sbjct: 241 FN-QSALILKMLHEHLPGMPLLVYPNSGEIYNPKEKTWHRPTNKLD-DWETTVKKFVDNG 298
Query: 216 ASLVGGCCRTTPNTIKGI 233
A ++GGCCRT+P I I
Sbjct: 299 ARIIGGCCRTSPKDIAEI 316
>sp|Q08985|SAM4_YEAST Homocysteine S-methyltransferase 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SAM4 PE=1 SV=1
Length = 325
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 97/199 (48%), Gaps = 17/199 (8%)
Query: 45 VGSYGAYLADGSEYSGNYG-DAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQA 103
+G +GA++ E++G+YG + ++ + F + DLI FETIPN E +A
Sbjct: 126 IGPWGAHIC--REFTGDYGAEPENIDFYQYFKPQLENFNKNDKLDLIGFETIPNIHELKA 183
Query: 104 YAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVS-----VGINCTP- 157
+E + P + + + + G ++ E A + + ++ +GINC
Sbjct: 184 ILSW-DESILSRPFYIGLSVHEHGVLRDGTTMEEIAQVIKDLGDKINPNFSFLGINCVSF 242
Query: 158 ---PRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEV 214
P + L + + +L YPNSGE YD ++K W+ N+ + + + V ++
Sbjct: 243 NQSPDILESLHQALPNMA---LLAYPNSGEVYDTEKKIWLPNSDKLNS-WDTVVKQYISS 298
Query: 215 GASLVGGCCRTTPNTIKGI 233
GA ++GGCCRT+P I+ I
Sbjct: 299 GARIIGGCCRTSPKDIQEI 317
>sp|Q9KUW9|METH_VIBCH Methionine synthase OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=metH PE=3 SV=1
Length = 1226
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 80/181 (44%), Gaps = 18/181 (9%)
Query: 66 ITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYA----ELLEEENIKIPAWFSF 121
+T + L + + + L++ DLI ETI + + A+A A + EE I +P S
Sbjct: 155 VTFDGLVEAYSESTRALIKGGSDLILIETIFDTLNAKACAFAVDSVFEELGISLPVMISG 214
Query: 122 NSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT-PPRFISGLILIIKKVTAKPILIYP 180
D E A R +S G+NC P + + + +++ + +P
Sbjct: 215 TITDASGRTLSGQTTEAFYNALRHVRPISFGLNCALGPDELRQYVEELSRISECYVSAHP 274
Query: 181 NSG---EFYDADRKEWVQNTGVSDEDFVSYVSKWCEVG-ASLVGGCCRTTPNTIKGIYRT 236
N+G F + D +S E+ ++++W + G +LVGGCC TTP I I +
Sbjct: 275 NAGLPNAFGEYD---------LSAEEMAEHIAEWAQAGFLNLVGGCCGTTPEHIAAIAKA 325
Query: 237 L 237
+
Sbjct: 326 V 326
>sp|Q04898|YM99_YEAST Putative uncharacterized protein YMR321C OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YMR321C PE=4
SV=1
Length = 105
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 8/87 (9%)
Query: 151 VGINCTP----PRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVS 206
+GINC P + L + + +L YPNSGE YD ++K W+ N+ + + +
Sbjct: 15 LGINCVSFNQSPDILESLHQALPNMA---LLAYPNSGEVYDTEKKIWLPNSDKLNS-WDT 70
Query: 207 YVSKWCEVGASLVGGCCRTTPNTIKGI 233
V ++ GA ++GGCCRT+P I+ I
Sbjct: 71 VVKQYISSGARIIGGCCRTSPKDIQEI 97
>sp|Q4JIJ3|METH_BOVIN Methionine synthase OS=Bos taurus GN=MTR PE=2 SV=1
Length = 1265
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 77/182 (42%), Gaps = 16/182 (8%)
Query: 66 ITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQA----YAELLEEENIKIPAWFSF 121
IT + L + ++ + + L++ D++ ETI + A+A +L EEE + P + S
Sbjct: 167 ITFDELVEAYKEQAKGLLDGGVDILLIETIFDTANAKAALFAVQKLFEEEYVPRPVFISG 226
Query: 122 NSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT-PPRFISGLILIIKKVTAKPILIYP 180
D E I+ S + +G+NC + I I K T +L YP
Sbjct: 227 TIVDKSGRTLSGQTGEAFVISVSHADPLCIGLNCALGAAEMRPFIETIGKCTTAYVLCYP 286
Query: 181 NSG---EFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCRTTPNTIKGIYRTL 237
N+G F D D V + D V+ +VGGCC TTP+ I+ I +
Sbjct: 287 NAGLPNTFGDYDETPHVMAMHLKDFAVDGLVN--------IVGGCCGTTPDHIREIAEAV 338
Query: 238 SN 239
N
Sbjct: 339 KN 340
>sp|Q5E814|METH_VIBF1 Methionine synthase OS=Vibrio fischeri (strain ATCC 700601 / ES114)
GN=metH PE=3 SV=1
Length = 1226
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 77/179 (43%), Gaps = 22/179 (12%)
Query: 66 ITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQA----YAELLEEENIKIPAWFSF 121
++ + L + + + L+ DLI ETI + + A+A + EE +I +P S
Sbjct: 156 VSFDELVEAYSESTRALIRGGSDLILIETIFDTLNAKACSFAVESVFEELDITLPVMISG 215
Query: 122 NSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT--PPR---FISGLILIIK-KVTAKP 175
D E A + +S G+NC P ++S L I + V+A P
Sbjct: 216 TITDASGRTLSGQTTEAFYNALRHVKPISFGLNCALGPDELREYVSDLSRISECYVSAHP 275
Query: 176 ILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVG-ASLVGGCCRTTPNTIKGI 233
PN+ YD +S ED +V++W G +L+GGCC TTP I+ +
Sbjct: 276 NAGLPNAFGEYD-----------LSPEDMAEHVAEWASSGFLNLIGGCCGTTPEHIRQM 323
>sp|P37586|METH_SALTY Methionine synthase OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=metH PE=3 SV=3
Length = 1227
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 76/184 (41%), Gaps = 22/184 (11%)
Query: 66 ITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEE----NIKIPAWFSF 121
IT + L +R + LVE DLI ET+ + + A+A ++EE + +P S
Sbjct: 154 ITFDQLVAAYRESTKALVEGGADLILIETVFDTLNAKAAVFAVKEEFEALGVDLPIMISG 213
Query: 122 NSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT--PP---RFISGLILIIK-KVTAKP 175
D E + ++ G+NC P +++ L I + VTA P
Sbjct: 214 TITDASGRTLSGQTTEAFYNSLRHAEALTFGLNCALGPDELRQYVQELSRIAECYVTAHP 273
Query: 176 ILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVG-ASLVGGCCRTTPNTIKGIY 234
PN+ YD D + + +W E G ++VGGCC TTP I +
Sbjct: 274 NAGLPNAFGEYDLDA-----------DTMAKQIREWAEAGFLNIVGGCCGTTPEHIAAMS 322
Query: 235 RTLS 238
R ++
Sbjct: 323 RAVA 326
>sp|Q87L95|METH_VIBPA Methionine synthase OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=metH PE=3 SV=1
Length = 1226
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 78/181 (43%), Gaps = 18/181 (9%)
Query: 66 ITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYA----ELLEEENIKIPAWFSF 121
++ + L + + + L+ DLI ETI + + A+A A + EE + +P S
Sbjct: 155 VSFDELVEAYSESTRALIRGGADLILIETIFDTLNAKACAFAVDSVFEELGVALPVMISG 214
Query: 122 NSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT-PPRFISGLILIIKKVTAKPILIYP 180
D E + R +S G+NC P + + + +++ + +P
Sbjct: 215 TITDASGRTLSGQTTEAFYNSLRHVRPLSFGLNCALGPDELRPYVEELSRISESFVSAHP 274
Query: 181 NSG---EFYDADRKEWVQNTGVSDEDFVSYVSKWCEVG-ASLVGGCCRTTPNTIKGIYRT 236
N+G F + D +S ED +V +W G +L+GGCC TTP I+ + +
Sbjct: 275 NAGLPNAFGEYD---------LSPEDMAEHVKEWASSGFLNLIGGCCGTTPEHIRQMAQA 325
Query: 237 L 237
+
Sbjct: 326 V 326
>sp|Q9AJQ8|METH_VIBFI Methionine synthase OS=Vibrio fischeri GN=metH PE=3 SV=1
Length = 1226
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 22/177 (12%)
Query: 66 ITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQA----YAELLEEENIKIPAWFSF 121
++ + L + + + L+ DLI ETI + + A+A + EE I +P S
Sbjct: 156 VSFDELVEAYSESTRALIRGGSDLILIETIFDTLNAKACSFAVESVFEELGITLPVMISG 215
Query: 122 NSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT--PPR---FISGLILIIK-KVTAKP 175
D E A + +S G+NC P ++S L I + V+A P
Sbjct: 216 TITDASGRTLSGQTTEAFYNALRHVKPISFGLNCALGPDELREYVSELSRISECYVSAHP 275
Query: 176 ILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVG-ASLVGGCCRTTPNTIK 231
PN+ YD +S ED +V++W G +L+GGCC TTP I+
Sbjct: 276 NAGLPNAFGEYD-----------LSPEDMAEHVAEWASSGFLNLIGGCCGTTPEHIR 321
>sp|Q7MHB1|METH_VIBVY Methionine synthase OS=Vibrio vulnificus (strain YJ016) GN=metH
PE=3 SV=1
Length = 1226
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 18/185 (9%)
Query: 66 ITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYA----ELLEEENIKIPAWFSF 121
++ + L + + + L+ DLI ETI + + A+A A + EE +P S
Sbjct: 155 VSFDELVEAYSESTRALIRGGSDLILIETIFDTLNAKACAFAVESVFEELGFALPVMISG 214
Query: 122 NSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT-PPRFISGLILIIKKVTAKPILIYP 180
D E + R +S G+NC P + + + +++ + +P
Sbjct: 215 TITDASGRTLSGQTTEAFYNSLRHVRPISFGLNCALGPDELRPYVEELSRISETFVSTHP 274
Query: 181 NSG---EFYDADRKEWVQNTGVSDEDFVSYVSKWCEVG-ASLVGGCCRTTPNTIKGIYRT 236
N+G F + D +S E+ +V +W + G +L+GGCC TTP I+ +
Sbjct: 275 NAGLPNAFGEYD---------LSPEEMAEHVKEWAQSGFLNLIGGCCGTTPEHIRHMAMA 325
Query: 237 LSNRS 241
+ S
Sbjct: 326 VEGES 330
>sp|Q8DCJ7|METH_VIBVU Methionine synthase OS=Vibrio vulnificus (strain CMCP6) GN=metH
PE=3 SV=1
Length = 1226
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 18/177 (10%)
Query: 66 ITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYA----ELLEEENIKIPAWFSF 121
++ + L + + + L+ DLI ETI + + A+A A + EE +P S
Sbjct: 155 VSFDELVEAYSESTRALIRGGSDLILIETIFDTLNAKACAFAVDSVFEELGFALPVMISG 214
Query: 122 NSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT-PPRFISGLILIIKKVTAKPILIYP 180
D E + R +S G+NC P + + + +++ + +P
Sbjct: 215 TITDASGRTLSGQTTEAFYNSLRHVRPISFGLNCALGPDELRPYVEELSRISETFVSTHP 274
Query: 181 NSG---EFYDADRKEWVQNTGVSDEDFVSYVSKWCEVG-ASLVGGCCRTTPNTIKGI 233
N+G F + D +S E+ +V +W + G +L+GGCC TTP I+ +
Sbjct: 275 NAGLPNAFGEYD---------LSPEEMAEHVKEWAQSGFLNLIGGCCGTTPEHIRHM 322
>sp|P87138|YDM7_SCHPO Uncharacterized protein C57A7.07c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC57A7.07c PE=4 SV=2
Length = 308
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/205 (20%), Positives = 90/205 (43%), Gaps = 16/205 (7%)
Query: 41 VAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAP------DLIAFET 94
+A +GS+ A + EY Y E L +FH+ R++ + S P D IAFE+
Sbjct: 97 IALCLGSHAATIPGCMEYKMIYDKPTDFEMLYNFHKNRIEAIQASNPKAFEKIDFIAFES 156
Query: 95 IPNKIEAQAYAELLEE-ENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGI 153
+P+ EA+ +L+++ + W + + + + S + ++ + + +G+
Sbjct: 157 LPHVTEAEVVCQLIQDMKGWSKRCWITCTCPER-STIERVSSIISKILSINHDSIWGIGV 215
Query: 154 NCTPPRFISGLILIIKKVTAKPI--LIYPNSGEFYDADRKEW----VQNTGVSDEDFVSY 207
NC + + ++ + I ++YP+ Y + + S E++ +
Sbjct: 216 NCFHLSLLEPIAKMLSSLLPSNITAILYPDGRGLYQNPDGTFSPGSTDHPAPSPEEWSTI 275
Query: 208 VSKWCEV--GASLVGGCCRTTPNTI 230
+K+ + G ++GGCC T N +
Sbjct: 276 TAKYSNLHNGNLILGGCCETNYNHL 300
>sp|P13009|METH_ECOLI Methionine synthase OS=Escherichia coli (strain K12) GN=metH PE=1
SV=5
Length = 1227
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 75/183 (40%), Gaps = 22/183 (12%)
Query: 66 ITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEE----NIKIPAWFSF 121
IT + L +R + LVE DLI ET+ + + A+A ++ E +++P S
Sbjct: 154 ITFDGLVAAYRESTKALVEGGADLILIETVFDTLNAKAAVFAVKTEFEALGVELPIMISG 213
Query: 122 NSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT--PP---RFISGLILIIK-KVTAKP 175
D E + ++ G+NC P +++ L I + VTA P
Sbjct: 214 TITDASGRTLSGQTTEAFYNSLRHAEALTFGLNCALGPDELRQYVQELSRIAECYVTAHP 273
Query: 176 ILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVG-ASLVGGCCRTTPNTIKGIY 234
PN+ YD D + + +W + G ++VGGCC TTP I +
Sbjct: 274 NAGLPNAFGEYDLDA-----------DTMAKQIREWAQAGFLNIVGGCCGTTPQHIAAMS 322
Query: 235 RTL 237
R +
Sbjct: 323 RAV 325
>sp|O06745|YITJ_BACSU Bifunctional homocysteine
S-methyltransferase/5,10-methylenetetrahydrofolate
reductase OS=Bacillus subtilis (strain 168) GN=yitJ PE=2
SV=1
Length = 612
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 18/177 (10%)
Query: 64 DAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNS 123
+A +++ +K R ++ +L+ PD + ET + EA+ ++ +E +P + +
Sbjct: 111 NAYSLDEIKRSFREQLYLLLHEEPDGLLLETYYDLEEAREVLKIARKET-DLPIMLNVSM 169
Query: 124 KDGVNVVSGDSLLECA-SIAESCKRVVSVGINCTPPRFISGLILIIKKVTAKPIL----- 177
+ + G L + SIA+ +V GINC G +I+ ++ PI
Sbjct: 170 HEQGVLQDGTPLSDALRSIADLGADIV--GINCR-----LGPYHMIEALSEVPIFDDVFL 222
Query: 178 -IYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCRTTPNTIKGI 233
+YPNS + V T D F + S++ + GA ++GGCC TTPN I+ +
Sbjct: 223 SVYPNSS-LPSLEEGRLVYET--DDTYFQNSASEFRKQGARIIGGCCGTTPNHIRAM 276
>sp|Q99707|METH_HUMAN Methionine synthase OS=Homo sapiens GN=MTR PE=1 SV=2
Length = 1265
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 16/182 (8%)
Query: 66 ITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQA----YAELLEEENIKIPAWFSF 121
IT + L + ++ + + L++ D++ ETI + A+A L EE+ P + S
Sbjct: 167 ITFDELVEAYQEQAKGLLDGGVDILLIETIFDTANAKAALFALQNLFEEKYAPRPIFISG 226
Query: 122 NSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT-PPRFISGLILIIKKVTAKPILIYP 180
D E I+ S + +G+NC + I II K T +L YP
Sbjct: 227 TIVDKSGRTLSGQTGEGFVISVSHGEPLCIGLNCALGAAEMRPFIEIIGKCTTAYVLCYP 286
Query: 181 NSG---EFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCRTTPNTIKGIYRTL 237
N+G F D D + + D V+ +VGGCC +TP+ I+ I +
Sbjct: 287 NAGLPNTFGDYDETPSMMAKHLKDFAMDGLVN--------IVGGCCGSTPDHIREIAEAV 338
Query: 238 SN 239
N
Sbjct: 339 KN 340
>sp|A8XY95|METH_CAEBR Probable methionine synthase OS=Caenorhabditis briggsae GN=nos-1
PE=3 SV=2
Length = 1273
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 81/187 (43%), Gaps = 21/187 (11%)
Query: 66 ITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQA----YAELLEEENI-KIPAWFS 120
+T + L + + + L++ D++ ET+ + A+A L E+E + +IP + S
Sbjct: 155 VTFQELVKAYGDQARSLIQGGVDVLLVETVFDSANAKAALFAIRTLFEDEGVPEIPVFLS 214
Query: 121 FNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT-----PPRFISGLILIIKKVTAKP 175
D E ++ + ++VG+NC +F+ + L +
Sbjct: 215 GTIVDMSGRTLSGQTGEAFLVSTKQGKPIAVGLNCALGAKDMRQFVQNMSLWSDTL---- 270
Query: 176 ILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVG-ASLVGGCCRTTPNTIKGIY 234
IL YPN+G + + E+ + ++ + G +++GGCC TTP+ I +Y
Sbjct: 271 ILCYPNAG------LPNALGGYDETPEEMAEVLREFAQDGLVNIIGGCCGTTPDHINAMY 324
Query: 235 RTLSNRS 241
+ + S
Sbjct: 325 KAVQGIS 331
>sp|Q9I2Q2|METH_PSEAE Methionine synthase OS=Pseudomonas aeruginosa (strain ATCC 15692 /
PAO1 / 1C / PRS 101 / LMG 12228) GN=metH PE=3 SV=1
Length = 1234
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 72/184 (39%), Gaps = 22/184 (11%)
Query: 66 ITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQA----YAELLEEENIKIPAWFSF 121
+T + L + + + L+E DLI ETI + + A+A + EE +++P S
Sbjct: 161 VTFDELVENYVEATRGLIEGGADLILIETIFDTLNAKAAIFAVQGVFEELGVELPIMISG 220
Query: 122 NSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT------PPRFISGLILIIKKVTAKP 175
D E + R +SVG+NC P V+A P
Sbjct: 221 TITDASGRTLSGQTTEAFWNSVRHARPISVGLNCALGAKELRPYIEELSTKADTHVSAHP 280
Query: 176 ILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVG-ASLVGGCCRTTPNTIKGIY 234
PN+ YD S + V ++ G ++VGGCC TTP I+ I
Sbjct: 281 NAGLPNAFGEYDE-----------SPAEMAVVVEEFAAAGFLNIVGGCCGTTPAHIEAIA 329
Query: 235 RTLS 238
+ ++
Sbjct: 330 KAVA 333
>sp|Q49775|METH_MYCLE Methionine synthase OS=Mycobacterium leprae (strain TN) GN=metH
PE=3 SV=3
Length = 1206
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 151 VGINC-TPPRFISGLILIIKKVTAKPILIYPNSG-EFYDADRKEWVQNTGVSDEDFVSYV 208
+G+NC T P +S + + K P+ + PN+G A E+ E ++
Sbjct: 229 IGLNCATGPAEMSEHLRHLSKHARIPVSVMPNAGLPVLGAKGAEYPLQPDELAEALAGFI 288
Query: 209 SKWCEVGASLVGGCCRTTPNTIKGI 233
+ E G SLVGGCC TTP+ I+ +
Sbjct: 289 A---EFGLSLVGGCCGTTPDHIREV 310
>sp|A6H5Y3|METH_MOUSE Methionine synthase OS=Mus musculus GN=Mtr PE=2 SV=1
Length = 1253
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 25/181 (13%)
Query: 66 ITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYA---ELLEEEN------IKIP 116
IT + L D ++ + + L++ D++ ETI + A+A + L EEN I I
Sbjct: 154 ITFDELVDAYQEQAKGLLDGRVDILLIETIFDTANAKAALFAIQNLFEENYAPPRPIFIS 213
Query: 117 AWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT-PPRFISGLILIIKKVTAKP 175
S ++ +G++ + S ++ + +G+NC+ + I I K T
Sbjct: 214 GTIVDKSGRTLSGQTGEAFVTSVSHSDP----LCIGLNCSLGAAEMRPFIETIGKCTTAY 269
Query: 176 ILIYPNSG---EFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCRTTPNTIKG 232
+L YPN+G F D D T + D V+ +VGGCC +TP+ I+
Sbjct: 270 VLCYPNAGLPNTFGDYDETPSTMATHLKDFAVDGLVN--------IVGGCCGSTPDHIRE 321
Query: 233 I 233
I
Sbjct: 322 I 322
>sp|Q9Z2Q4|METH_RAT Methionine synthase OS=Rattus norvegicus GN=Mtr PE=2 SV=1
Length = 1253
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 25/187 (13%)
Query: 66 ITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLE---EEN------IKIP 116
IT + L + ++ + + L++ D++ ETI + A+A L+ EEN I I
Sbjct: 154 ITFDELVEAYQEQAKGLLDGGVDILLIETIFDTANAKAALFALQKLFEENYASPRPIFIS 213
Query: 117 AWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT-PPRFISGLILIIKKVTAKP 175
S ++ +G++ + S ++ + +G+NC + I I K T
Sbjct: 214 GTIVDKSGRTLSGQTGEAFVTSVSHSDP----LCIGLNCALGAAEMRPFIETIGKCTTAY 269
Query: 176 ILIYPNSG---EFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCRTTPNTIKG 232
+L YPN+G F D D + + D V+ +VGGCC +TP+ I+
Sbjct: 270 VLCYPNAGLPNTFGDYDETPAMMAMHLKDFAVDGLVN--------VVGGCCGSTPDHIRE 321
Query: 233 IYRTLSN 239
I + N
Sbjct: 322 IAEAVKN 328
>sp|Q09582|METH_CAEEL Probable methionine synthase OS=Caenorhabditis elegans GN=nos-1
PE=1 SV=1
Length = 1249
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/180 (20%), Positives = 79/180 (43%), Gaps = 13/180 (7%)
Query: 66 ITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQA----YAELLEEENI-KIPAWFS 120
+T + L + + + L++ D++ ET+ + A+A L E+E + ++P + S
Sbjct: 155 VTFQELVKAYGDQARSLIQGGVDVLLVETVFDSANAKAALFAIRTLFEDEGVPEMPVFLS 214
Query: 121 FNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT-PPRFISGLILIIKKVTAKPILIY 179
D E ++ + ++VG+NC + + + + K + I+ Y
Sbjct: 215 GTIVDMSGRTLSGQTGEAFLVSTKQGKPMAVGLNCALGAKDMRQFVDNMSKWSDSFIICY 274
Query: 180 PNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVG-ASLVGGCCRTTPNTIKGIYRTLS 238
PN+G + + E+ + ++ G +++GGCC TTP+ I +Y+ +
Sbjct: 275 PNAG------LPNALGGYDETPEEMADVLREFARDGLVNIIGGCCGTTPDHINAMYKAVQ 328
>sp|O33465|METH_PSEPU Methionine synthase (Fragment) OS=Pseudomonas putida GN=metH PE=3
SV=1
Length = 607
Score = 39.3 bits (90), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 72/184 (39%), Gaps = 22/184 (11%)
Query: 66 ITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQ----AYAELLEEENIKIPAWFSF 121
+T + L + + + L+E DLI ETI + + A+ A ++ EE+ +++P S
Sbjct: 157 VTFDELVENYIEATRGLIEGGADLILIETIFDTLNAKAAIFAVQQVFEEDAVELPIMISG 216
Query: 122 NSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT------PPRFISGLILIIKKVTAKP 175
D E + + +SVG+NC P V+A P
Sbjct: 217 TITDASGRTLSGQTTEAFWNSVRHAKPISVGLNCALGAKDLRPYLEELSTKADTHVSAHP 276
Query: 176 ILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVG-ASLVGGCCRTTPNTIKGIY 234
PN+ YD E + V ++ G +++GGC TTP I+ I
Sbjct: 277 NAGLPNAFGEYDETPAE-----------MAAVVEEFAASGFLNIIGGCSGTTPGHIQAIA 325
Query: 235 RTLS 238
++
Sbjct: 326 EAVA 329
>sp|O33259|METH_MYCTU Methionine synthase OS=Mycobacterium tuberculosis GN=metH PE=3 SV=1
Length = 1192
Score = 38.1 bits (87), Expect = 0.063, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 151 VGINC-TPPRFISGLILIIKKVTAKPILIYPNSG-EFYDADRKEWVQNTGVSDEDFVSYV 208
+G+NC T P +S + + + P+ + PN+G A E+ E ++
Sbjct: 227 IGLNCATGPAEMSEHLRHLSRHARIPVSVMPNAGLPVLGAKGAEYPLLPDELAEALAGFI 286
Query: 209 SKWCEVGASLVGGCCRTTPNTIKGIYRTLSN 239
+ E G SLVGGCC TTP I+ + ++N
Sbjct: 287 A---EFGLSLVGGCCGTTPAHIREVAAAVAN 314
>sp|Q54P92|METH_DICDI Methionine synthase OS=Dictyostelium discoideum GN=mtr PE=3 SV=1
Length = 1260
Score = 37.7 bits (86), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 90/225 (40%), Gaps = 22/225 (9%)
Query: 19 RCSKSSCDSVTDDRIPKHRPILVAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRR 78
R +KS+C+ T + RP V +VG + + + L + +
Sbjct: 117 RLAKSACEEYT--KKDPSRPRFVCGAVGPTNKTASISPSVERPEARNVLFDELVSGYLEQ 174
Query: 79 VQVLVESAPDLIAFETIPNKIEAQA----YAELLEEENIKIPAWFSFNSKDGVNVVSGDS 134
V+ LVE D+I ET+ + + +A E + + ++P + S D
Sbjct: 175 VEALVEGGIDVILVETVFDSLNCKAALFAIEEFFKTYSPRLPVFVSGTIVDKSGRTLSGQ 234
Query: 135 LLECASIAESCKRVVSVGINCT-PPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEW 193
E + + ++ G+NC + + + I K + + YPN+G
Sbjct: 235 TGEAFYTSVASANLMVFGLNCALGAQEMRPFLQNISKCSECYVSCYPNAG---------- 284
Query: 194 VQNT-GVSDED---FVSYVSKWCEVGA-SLVGGCCRTTPNTIKGI 233
+ NT G DE + ++ E G ++VGGCC T+P+ I+
Sbjct: 285 LPNTFGGYDETPEMMAEQIKEFAESGLLNIVGGCCGTSPDHIRAF 329
>sp|Q5M8Z0|BHMT1_XENTR Betaine--homocysteine S-methyltransferase 1 OS=Xenopus tropicalis
GN=bhmt PE=2 SV=1
Length = 403
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 52/247 (21%), Positives = 101/247 (40%), Gaps = 30/247 (12%)
Query: 12 ARDMYFERCSKSSCDSVTDDRIPKHRPILVAASVGSYGAYLADGSEYSGNYGDAITVETL 71
A+ + ++ ++++CD + + LVA V +YL+ SE +
Sbjct: 88 AKKISGQKVNEAACDIARE--VANEGDALVAGGVSQTPSYLSCKSEVE-----------V 134
Query: 72 KDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVS 131
K R+++ V ++ D + E + EA E+L+E + A + +N V+
Sbjct: 135 KGIFRKQLDVFIKKNVDFLIAEYFEHVEEAVWAVEVLKESGKPVAATLCIGPQGDLNGVT 194
Query: 132 GDSLLECA-SIAESCKRVVSVGINCTPPRFISGLILIIKKVTA---------KPILIY-P 180
ECA +A++ VV V + P I+ + L+ + + A +P+ + P
Sbjct: 195 PG---ECAVRLAKAGASVVGVNCHFDPMTCIATVKLMKEGLVAAKVKAHLMTQPLAYHTP 251
Query: 181 NSGEFYDADRKEW---VQNTGVSDEDFVSYVSKWCEVGASLVGGCCRTTPNTIKGIYRTL 237
+ G+ D E+ ++ V+ D Y + +G +GGCC P + I L
Sbjct: 252 DCGKQGFIDLPEFPFALEPRIVTRWDIHKYAREAYNLGVRYIGGCCGFEPYHTRAIAEEL 311
Query: 238 SNRSSVL 244
+ L
Sbjct: 312 APERGFL 318
>sp|Q55786|METH_SYNY3 Methionine synthase OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=metH PE=3 SV=1
Length = 1195
Score = 36.6 bits (83), Expect = 0.16, Method: Composition-based stats.
Identities = 37/173 (21%), Positives = 81/173 (46%), Gaps = 8/173 (4%)
Query: 66 ITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLE----EENIKIPAWFSF 121
+ ++LKD + +V+ L + DL+ ET + ++ +A +E E+ ++P S
Sbjct: 136 VDYDSLKDAYVVQVRGLYDGGVDLLLVETCQDVLQIKAALNAIEQVFAEKGDRLPLMVSV 195
Query: 122 NSKDGVNVVSGDSLLECASIAESCKRVVSVGINC-TPPRFISGLILIIKKVTAKPILIYP 180
+ ++ G + +I E + +G+NC T P + + + + + + P
Sbjct: 196 TMETMGTMLVGTEMAAALAILEPYP-IDILGLNCATGPDLMKEHVKYLSEHSPFVVSCIP 254
Query: 181 NSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCRTTPNTIKGI 233
N+G + + + + T + E +S + ++G ++GGCC T P+ IK +
Sbjct: 255 NAGLPENVGGQAFYRLTPM--ELQMSLMHFIEDLGVQVIGGCCGTRPDHIKAL 305
>sp|A5CX71|ENO_VESOH Enolase OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii
(strain HA) GN=eno PE=3 SV=1
Length = 428
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 182 SGEFYDADRKEW---VQNTGVSDEDFVSYVSKWCE 213
S EFYD D K + +N S E+FV+Y++KW E
Sbjct: 244 SSEFYDNDNKTYNLISENKSFSSEEFVNYLAKWVE 278
>sp|Q5XGM3|BHMT1_XENLA Betaine--homocysteine S-methyltransferase 1 OS=Xenopus laevis
GN=bhmt PE=2 SV=1
Length = 403
Score = 35.4 bits (80), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 88/219 (40%), Gaps = 28/219 (12%)
Query: 40 LVAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKI 99
LVA V +YL+ SE +K R+++ V ++ D + E +
Sbjct: 114 LVAGGVSQTPSYLSCKSEVE-----------VKGIFRKQLDVFIKKNVDFLIAEYFEHVE 162
Query: 100 EAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECA-SIAESCKRVVSVGINCTPP 158
EA E+L+E + A + +N VS ECA +A++ VV V + P
Sbjct: 163 EAVWAVEVLKESGKPVAATLCIGPEGDLNGVSPG---ECAVRLAKAGASVVGVNCHFDPM 219
Query: 159 RFISGLILIIKKVTA---------KPILIY-PNSGEFYDADRKEW---VQNTGVSDEDFV 205
++ + L+ + + A +P+ + P+ G+ D E+ ++ V+ D
Sbjct: 220 TCVATVKLMKEGLVAAKVKAHLMTQPLAYHTPDCGKQGFIDLPEFPFALEPRIVTRWDIH 279
Query: 206 SYVSKWCEVGASLVGGCCRTTPNTIKGIYRTLSNRSSVL 244
Y ++G +GGCC P + I L+ L
Sbjct: 280 KYARAAYDLGVRYIGGCCGFEPYHTRAIAEELAPERGFL 318
>sp|Q55B10|AGAL_DICDI Probable alpha-galactosidase OS=Dictyostelium discoideum GN=melA
PE=3 SV=1
Length = 385
Score = 35.0 bits (79), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 166 LIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGC 222
++ + PI + G F D D V N G+S+ ++VS+ S W + A L+ GC
Sbjct: 210 MLSNLMAQAPITSFSGIGGFNDPDMMM-VGNGGMSNTEYVSHFSLWSLLNAPLIAGC 265
>sp|P71012|PTF3A_BACSU PTS system fructose-specific EIIABC component OS=Bacillus subtilis
(strain 168) GN=fruA PE=1 SV=2
Length = 635
Score = 34.7 bits (78), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 12/64 (18%)
Query: 160 FISG-LILIIKKVTA---------KPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVS 209
F++G +++++KKV KP+LIYP G F ++V NT V+ F+++++
Sbjct: 403 FLAGYVVILLKKVFTFIPQSLDGLKPVLIYPLFGIFITGVLMQFVVNTPVA--AFMNFLT 460
Query: 210 KWCE 213
W E
Sbjct: 461 NWLE 464
>sp|A5D5I3|RPOC_PELTS DNA-directed RNA polymerase subunit beta' OS=Pelotomaculum
thermopropionicum (strain DSM 13744 / JCM 10971 / SI)
GN=rpoC PE=3 SV=1
Length = 1170
Score = 34.3 bits (77), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
Query: 39 ILVAASVGSYGAYLADGSEYSGNY-GDAIT-----VETLKDFHRRRVQVLVESAPDLIAF 92
I+ A S+G G L + ++G GD IT VE L + R + Q ++ A +
Sbjct: 877 IIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVEELFEARRPKGQAIIAEADGTVEV 936
Query: 93 ETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLE 137
+ + E + AE + ++P +DG V +GD L E
Sbjct: 937 REVKGRREIEVTAEDGTKSVYQVPYGARLKVRDGDRVYAGDELTE 981
>sp|Q6NTR1|MET13_XENLA Methyltransferase-like protein 13 OS=Xenopus laevis GN=mettl13 PE=2
SV=1
Length = 693
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 12/61 (19%)
Query: 118 WFSFNSKDGVNVVSGDSLLECASIA---ESCKRVV---------SVGINCTPPRFISGLI 165
WF+F + + V D L+ S+A E+C V+ SVG++C PP F+ +
Sbjct: 532 WFNFCQDERMKVHLADGLVHINSLADNGEACYDVIMFDVDSKDPSVGMSCPPPAFVEKMF 591
Query: 166 L 166
L
Sbjct: 592 L 592
>sp|A6L0E8|SYE_BACV8 Glutamate--tRNA ligase OS=Bacteroides vulgatus (strain ATCC 8482 /
DSM 1447 / NCTC 11154) GN=gltX PE=3 SV=1
Length = 505
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 49 GAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQ 102
G +G + GNYG E +D +++ VQVL++S IAF+T P +++A+
Sbjct: 68 GINFDEGVSFGGNYGPYRQSER-RDIYKKYVQVLLDSGKAYIAFDT-PAELDAK 119
>sp|A4SGL6|ENO_PROVI Enolase OS=Prosthecochloris vibrioformis (strain DSM 265) GN=eno
PE=3 SV=1
Length = 437
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 176 ILIYPNSGEFYDADRKEWV----QNTGVSDEDFVSYVSKWC 212
I + P S EFYDAD+K++V +S E+ +Y KW
Sbjct: 248 IALDPASSEFYDADKKKYVFKKSDKRELSSEEMAAYWEKWS 288
>sp|B1Y919|Y1321_PYRNV UPF0095 protein Tneu_1321 OS=Pyrobaculum neutrophilum (strain DSM
2338 / JCM 9278 / V24Sta) GN=Tneu_1321 PE=3 SV=1
Length = 403
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 24/129 (18%)
Query: 17 FERCSKSSCDSVTDDRIPKHRPILVAA---SVGSYGAYLADGSEYSGNYGDAITVETLKD 73
FE+ SK+ + ++ LVAA S+ G YLA+ I V +KD
Sbjct: 62 FEKNSKTKAKIYIPSNLDRYETALVAALIESIERVGPYLAN-----------IKVLEIKD 110
Query: 74 FHRRRVQVLVESAPDLIAF----------ETIPNKIEAQAYAELLEEENIKIPAWFSFNS 123
+ + ++E A +L+ E I E A AE++E K+PA
Sbjct: 111 LREEKRRRIIEKAKELVKMIEEEILPDTKEIIEKLKEDVAKAEIVEYGPEKLPAGPDVEK 170
Query: 124 KDGVNVVSG 132
D V +V G
Sbjct: 171 SDSVIIVEG 179
>sp|B3EL51|ENO_CHLPB Enolase OS=Chlorobium phaeobacteroides (strain BS1) GN=eno PE=3
SV=1
Length = 437
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 176 ILIYPNSGEFYDADRKEWVQNTGVSDE----DFVSYVSKWC 212
I + P S E+YDADRK++V E + Y KWC
Sbjct: 248 IALDPASSEYYDADRKKYVFKKSSGKELDASEMAEYWEKWC 288
>sp|Q54CB2|XPO6_DICDI Exportin-6 OS=Dictyostelium discoideum GN=xpo6 PE=3 SV=1
Length = 1047
Score = 32.3 bits (72), Expect = 3.5, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 154 NCTPP--RFISGLILIIKKVTAKPILIYPNS--GEFYDADRKEWVQNTGVSDEDFVSYVS 209
N TPP ++ GL+L ++ + + I+ N+ E D D++ + G+S+ SY+
Sbjct: 402 NGTPPPSKYTDGLLLFQSELVKRILYIFNNNTLSELDDEDKE--INENGISETQLESYIK 459
Query: 210 KWCEVGASL 218
K EV A +
Sbjct: 460 KSIEVVAKV 468
>sp|Q6P9R1|DDX51_MOUSE ATP-dependent RNA helicase DDX51 OS=Mus musculus GN=Ddx51 PE=2 SV=1
Length = 639
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 20 CSKSSCDSVTDDRIPKHRPILVAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRV 79
CS++ C T+ R HR L+A + G +E+S YG + LK F + ++
Sbjct: 477 CSRALC--FTNSRENSHRLYLLAQAFGGVSV-----AEFSSRYGPGQRKKILKQFEQGKI 529
Query: 80 QVLVES 85
Q+L+ +
Sbjct: 530 QLLIST 535
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,920,836
Number of Sequences: 539616
Number of extensions: 3703410
Number of successful extensions: 9498
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 9440
Number of HSP's gapped (non-prelim): 64
length of query: 247
length of database: 191,569,459
effective HSP length: 114
effective length of query: 133
effective length of database: 130,053,235
effective search space: 17297080255
effective search space used: 17297080255
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)