Query 025860
Match_columns 247
No_of_seqs 118 out of 1037
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 10:21:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025860.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025860hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02489 homocysteine S-methyl 100.0 6.5E-61 1.4E-65 436.1 29.8 237 1-239 97-333 (335)
2 PRK09485 mmuM homocysteine met 100.0 4.6E-57 1E-61 406.4 28.1 216 1-238 88-303 (304)
3 KOG1579 Homocysteine S-methylt 100.0 3.5E-56 7.5E-61 392.5 24.4 222 1-241 94-316 (317)
4 COG2040 MHT1 Homocysteine/sele 100.0 2.3E-55 5E-60 382.4 23.0 215 1-240 84-299 (300)
5 PRK07534 methionine synthase I 100.0 4.7E-52 1E-56 377.8 26.9 209 1-242 86-298 (336)
6 PF02574 S-methyl_trans: Homoc 100.0 3.2E-54 6.9E-59 388.1 11.3 216 1-239 83-305 (305)
7 COG0646 MetH Methionine syntha 100.0 3.4E-50 7.4E-55 351.5 24.8 212 1-239 94-311 (311)
8 PRK08645 bifunctional homocyst 100.0 2.3E-49 5.1E-54 385.5 26.1 207 1-243 84-291 (612)
9 PRK09490 metH B12-dependent me 100.0 3E-49 6.4E-54 402.7 28.0 220 1-243 106-334 (1229)
10 TIGR02082 metH 5-methyltetrahy 100.0 1.1E-47 2.5E-52 391.8 28.1 219 1-243 91-318 (1178)
11 COG0646 MetH Methionine syntha 97.6 0.0081 1.7E-07 53.9 17.5 160 67-240 51-245 (311)
12 TIGR02082 metH 5-methyltetrahy 96.9 0.07 1.5E-06 56.5 18.2 156 67-240 48-251 (1178)
13 cd00945 Aldolase_Class_I Class 96.9 0.12 2.7E-06 42.5 16.4 137 75-238 15-170 (201)
14 PRK03620 5-dehydro-4-deoxygluc 96.7 0.4 8.8E-06 43.2 19.4 119 39-183 10-142 (303)
15 cd02810 DHOD_DHPD_FMN Dihydroo 96.6 0.09 2E-06 46.8 14.4 85 114-220 98-194 (289)
16 PRK09485 mmuM homocysteine met 96.6 0.53 1.2E-05 42.5 19.6 157 67-239 44-237 (304)
17 cd04738 DHOD_2_like Dihydrooro 96.3 0.25 5.5E-06 45.1 15.6 102 79-182 65-211 (327)
18 PRK09490 metH B12-dependent me 96.2 0.47 1E-05 50.5 19.0 159 67-239 63-266 (1229)
19 TIGR01037 pyrD_sub1_fam dihydr 96.2 0.14 3.1E-06 45.8 13.3 83 114-219 90-186 (300)
20 cd07937 DRE_TIM_PC_TC_5S Pyruv 96.0 0.48 1E-05 42.2 15.5 99 78-180 96-199 (275)
21 PRK07534 methionine synthase I 95.9 1.1 2.4E-05 41.2 18.1 158 67-238 43-228 (336)
22 PF00490 ALAD: Delta-aminolevu 95.9 0.91 2E-05 41.3 16.7 173 38-219 112-312 (324)
23 cd04740 DHOD_1B_like Dihydroor 95.9 1 2.2E-05 40.2 17.3 137 73-238 102-278 (296)
24 cd02940 DHPD_FMN Dihydropyrimi 95.8 0.27 5.9E-06 44.2 13.2 62 114-181 99-176 (299)
25 TIGR00737 nifR3_yhdG putative 95.7 0.15 3.3E-06 46.2 11.5 93 84-183 29-141 (319)
26 PRK13384 delta-aminolevulinic 95.7 1.4 3.1E-05 40.0 17.1 170 38-219 114-311 (322)
27 PRK10415 tRNA-dihydrouridine s 95.6 0.57 1.2E-05 42.7 14.8 94 84-184 31-144 (321)
28 PRK08645 bifunctional homocyst 95.6 1.1 2.5E-05 44.4 17.8 157 67-239 41-221 (612)
29 COG0329 DapA Dihydrodipicolina 95.5 0.78 1.7E-05 41.4 15.1 106 66-184 22-141 (299)
30 cd02801 DUS_like_FMN Dihydrour 95.5 0.57 1.2E-05 39.9 13.6 93 85-184 22-134 (231)
31 cd04823 ALAD_PBGS_aspartate_ri 95.5 1.8 3.8E-05 39.4 16.9 170 38-219 109-307 (320)
32 PRK05286 dihydroorotate dehydr 95.4 0.61 1.3E-05 42.9 14.4 123 79-218 75-241 (344)
33 cd00408 DHDPS-like Dihydrodipi 95.4 1.8 3.8E-05 38.3 17.3 105 66-183 15-133 (281)
34 PRK07259 dihydroorotate dehydr 95.4 1.1 2.4E-05 40.1 15.7 82 114-219 91-186 (301)
35 PRK09283 delta-aminolevulinic 95.3 2 4.4E-05 39.1 16.9 170 38-219 112-310 (323)
36 cd04740 DHOD_1B_like Dihydroor 95.3 0.8 1.7E-05 40.9 14.4 82 114-219 89-183 (296)
37 PRK09250 fructose-bisphosphate 95.2 0.55 1.2E-05 43.3 13.0 136 78-232 96-247 (348)
38 TIGR00683 nanA N-acetylneurami 95.1 0.59 1.3E-05 41.9 13.0 105 66-183 18-138 (290)
39 cd04824 eu_ALAD_PBGS_cysteine_ 95.1 2.5 5.5E-05 38.4 17.1 171 38-219 107-308 (320)
40 PF00701 DHDPS: Dihydrodipicol 95.0 0.53 1.2E-05 41.9 12.4 104 66-182 19-136 (289)
41 TIGR03249 KdgD 5-dehydro-4-deo 95.0 2.6 5.6E-05 37.8 20.0 119 39-183 8-140 (296)
42 PRK14042 pyruvate carboxylase 95.0 1 2.2E-05 44.6 15.0 95 82-180 105-204 (596)
43 PRK06852 aldolase; Validated 94.9 0.79 1.7E-05 41.6 13.2 100 78-185 64-181 (304)
44 PLN02489 homocysteine S-methyl 94.9 3 6.5E-05 38.3 19.8 158 67-239 53-264 (335)
45 cd03174 DRE_TIM_metallolyase D 94.9 1.8 3.9E-05 37.6 15.3 148 66-242 16-189 (265)
46 cd00384 ALAD_PBGS Porphobilino 94.9 2.9 6.3E-05 37.9 17.0 170 38-219 104-302 (314)
47 cd00951 KDGDH 5-dehydro-4-deox 94.8 2.3 5E-05 38.0 16.0 117 40-183 4-135 (289)
48 cd00952 CHBPH_aldolase Trans-o 94.8 1 2.2E-05 40.8 13.7 105 66-183 26-145 (309)
49 PRK10550 tRNA-dihydrouridine s 94.7 0.92 2E-05 41.2 13.2 91 86-183 25-143 (312)
50 COG0113 HemB Delta-aminolevuli 94.6 3.4 7.4E-05 37.4 17.0 171 38-219 116-315 (330)
51 TIGR00742 yjbN tRNA dihydrouri 94.5 1.7 3.8E-05 39.6 14.6 116 86-219 24-158 (318)
52 PRK06843 inosine 5-monophospha 94.5 1.2 2.7E-05 42.0 13.7 66 76-153 155-221 (404)
53 PRK13111 trpA tryptophan synth 94.4 3.3 7.1E-05 36.7 15.6 157 76-238 29-223 (258)
54 TIGR03217 4OH_2_O_val_ald 4-hy 94.4 4.1 8.9E-05 37.4 18.5 155 51-240 9-184 (333)
55 cd00958 DhnA Class I fructose- 94.4 1.1 2.3E-05 38.6 12.4 118 78-217 81-209 (235)
56 PRK12581 oxaloacetate decarbox 94.3 1.8 4E-05 41.6 14.6 99 79-181 111-214 (468)
57 cd07943 DRE_TIM_HOA 4-hydroxy- 94.3 1.9 4.1E-05 37.9 14.0 97 78-180 90-192 (263)
58 TIGR00222 panB 3-methyl-2-oxob 94.3 3.5 7.5E-05 36.7 15.4 113 37-177 75-199 (263)
59 PRK00865 glutamate racemase; P 94.2 2.6 5.5E-05 37.2 14.5 152 60-235 42-197 (261)
60 PRK14040 oxaloacetate decarbox 94.1 2.4 5.2E-05 42.0 15.6 99 79-181 103-206 (593)
61 cd02911 arch_FMN Archeal FMN-b 94.1 3.2 6.9E-05 36.1 14.7 92 79-183 41-149 (233)
62 TIGR02127 pyrF_sub2 orotidine 94.1 1.5 3.3E-05 38.9 12.8 157 67-237 35-208 (261)
63 PRK13523 NADPH dehydrogenase N 93.9 5.1 0.00011 36.8 16.6 140 69-224 37-249 (337)
64 cd00950 DHDPS Dihydrodipicolin 93.9 0.74 1.6E-05 40.8 10.7 104 66-182 18-135 (284)
65 PRK03170 dihydrodipicolinate s 93.9 1.7 3.8E-05 38.7 13.1 104 66-182 19-136 (292)
66 PRK05458 guanosine 5'-monophos 93.9 0.96 2.1E-05 41.4 11.5 93 77-184 100-210 (326)
67 PRK13587 1-(5-phosphoribosyl)- 93.8 0.84 1.8E-05 39.7 10.6 98 78-179 90-198 (234)
68 PRK07565 dihydroorotate dehydr 93.7 0.98 2.1E-05 41.3 11.3 76 98-181 86-173 (334)
69 cd04732 HisA HisA. Phosphorib 93.7 0.9 1.9E-05 38.9 10.5 102 77-183 86-198 (234)
70 PRK07259 dihydroorotate dehydr 93.5 5.3 0.00011 35.8 15.7 135 74-237 105-280 (301)
71 cd02940 DHPD_FMN Dihydropyrimi 93.5 3.6 7.8E-05 36.9 14.5 73 75-156 115-203 (299)
72 KOG2335 tRNA-dihydrouridine sy 93.5 0.43 9.2E-06 44.0 8.4 131 74-234 33-195 (358)
73 PLN02274 inosine-5'-monophosph 93.5 1.2 2.7E-05 43.1 12.1 81 36-153 234-316 (505)
74 cd06557 KPHMT-like Ketopantoat 93.5 2.5 5.4E-05 37.4 13.0 113 39-177 74-197 (254)
75 PF02574 S-methyl_trans: Homoc 93.4 1.8 3.8E-05 38.9 12.4 160 67-239 39-237 (305)
76 cd00954 NAL N-Acetylneuraminic 93.4 4.9 0.00011 35.8 15.1 105 66-183 18-138 (288)
77 cd04722 TIM_phosphate_binding 93.4 1 2.2E-05 36.3 10.0 103 73-182 12-123 (200)
78 TIGR00007 phosphoribosylformim 93.3 1.3 2.8E-05 37.9 11.0 102 77-183 85-197 (230)
79 cd08210 RLP_RrRLP Ribulose bis 93.3 6.9 0.00015 36.4 16.4 116 37-182 125-252 (364)
80 TIGR00674 dapA dihydrodipicoli 93.2 1.1 2.3E-05 40.0 10.6 104 66-182 16-133 (285)
81 PRK04147 N-acetylneuraminate l 93.2 2.9 6.4E-05 37.4 13.4 104 66-182 21-139 (293)
82 cd00465 URO-D_CIMS_like The UR 93.2 5.8 0.00013 35.2 18.1 144 69-238 140-305 (306)
83 PRK11815 tRNA-dihydrouridine s 93.2 3.6 7.8E-05 37.7 14.1 116 86-219 34-168 (333)
84 cd00377 ICL_PEPM Members of th 93.2 2.6 5.7E-05 36.8 12.7 100 77-183 88-206 (243)
85 PF01207 Dus: Dihydrouridine s 93.1 0.46 9.9E-06 43.1 8.1 132 84-235 19-177 (309)
86 PLN02617 imidazole glycerol ph 92.9 1.5 3.2E-05 43.0 11.7 106 77-184 338-493 (538)
87 PRK11613 folP dihydropteroate 92.9 6.8 0.00015 35.2 15.3 147 38-216 14-177 (282)
88 cd00381 IMPDH IMPDH: The catal 92.9 6.6 0.00014 35.9 15.4 67 75-153 95-162 (325)
89 PRK02412 aroD 3-dehydroquinate 92.8 3 6.5E-05 36.7 12.5 101 77-182 99-206 (253)
90 PRK15452 putative protease; Pr 92.7 5 0.00011 38.4 14.7 127 78-236 15-155 (443)
91 PRK01130 N-acetylmannosamine-6 92.7 0.86 1.9E-05 38.9 8.8 89 76-178 78-178 (221)
92 COG0407 HemE Uroporphyrinogen- 92.6 8.3 0.00018 35.8 15.6 144 70-241 186-349 (352)
93 PRK05581 ribulose-phosphate 3- 92.6 4.4 9.5E-05 34.2 13.1 18 75-92 18-35 (220)
94 TIGR02313 HpaI-NOT-DapA 2,4-di 92.6 3.1 6.8E-05 37.3 12.6 104 66-182 18-136 (294)
95 PRK00311 panB 3-methyl-2-oxobu 92.4 3.6 7.8E-05 36.6 12.6 114 39-178 77-201 (264)
96 PF03437 BtpA: BtpA family; I 92.4 7.4 0.00016 34.4 17.6 37 60-98 18-54 (254)
97 cd07944 DRE_TIM_HOA_like 4-hyd 92.1 8 0.00017 34.2 18.1 156 51-240 5-179 (266)
98 PRK05437 isopentenyl pyrophosp 92.1 9.8 0.00021 35.2 15.6 138 71-232 75-229 (352)
99 cd04741 DHOD_1A_like Dihydroor 92.0 2.2 4.7E-05 38.4 10.9 61 114-181 91-165 (294)
100 COG0821 gcpE 1-hydroxy-2-methy 91.9 2 4.4E-05 39.3 10.3 80 75-157 38-134 (361)
101 PF01487 DHquinase_I: Type I 3 91.8 2.1 4.5E-05 36.7 10.2 104 73-182 75-183 (224)
102 COG5016 Pyruvate/oxaloacetate 91.8 2.5 5.5E-05 39.8 11.1 105 69-180 97-206 (472)
103 PRK09282 pyruvate carboxylase 91.8 5.6 0.00012 39.4 14.3 97 81-181 104-205 (592)
104 PLN02591 tryptophan synthase 91.7 8.9 0.00019 33.8 15.3 156 75-236 18-210 (250)
105 TIGR01235 pyruv_carbox pyruvat 91.7 4.7 0.0001 43.0 14.4 99 82-181 634-740 (1143)
106 PF01729 QRPTase_C: Quinolinat 91.7 0.97 2.1E-05 37.5 7.6 65 78-155 92-156 (169)
107 PRK15063 isocitrate lyase; Pro 91.5 6.3 0.00014 37.5 13.5 32 78-110 270-302 (428)
108 PRK12330 oxaloacetate decarbox 91.3 3.7 8.1E-05 39.8 12.2 99 79-181 103-208 (499)
109 TIGR00612 ispG_gcpE 1-hydroxy- 91.3 8.5 0.00018 35.4 13.7 119 75-212 36-157 (346)
110 TIGR01919 hisA-trpF 1-(5-phosp 91.2 3.2 6.9E-05 36.3 10.8 96 77-178 87-198 (243)
111 COG0107 HisF Imidazoleglycerol 91.1 2.7 5.8E-05 36.7 9.8 102 81-185 91-211 (256)
112 TIGR01108 oadA oxaloacetate de 91.0 12 0.00026 37.1 15.6 98 80-181 98-200 (582)
113 cd08205 RuBisCO_IV_RLP Ribulos 90.7 4.6 9.9E-05 37.6 11.9 98 66-182 143-256 (367)
114 cd04739 DHOD_like Dihydroorota 90.7 5.8 0.00012 36.2 12.4 61 114-181 99-171 (325)
115 PRK00748 1-(5-phosphoribosyl)- 90.7 3.2 6.9E-05 35.5 10.3 102 77-184 87-199 (233)
116 PRK12999 pyruvate carboxylase; 90.7 13 0.00028 39.9 16.5 100 79-181 633-742 (1146)
117 TIGR00736 nifR3_rel_arch TIM-b 90.7 6.5 0.00014 34.3 12.1 58 114-183 67-144 (231)
118 PRK06552 keto-hydroxyglutarate 90.5 6.3 0.00014 33.9 11.8 102 78-224 80-185 (213)
119 PRK08227 autoinducer 2 aldolas 90.4 9.3 0.0002 34.0 13.1 91 79-183 48-151 (264)
120 cd04729 NanE N-acetylmannosami 90.4 3.2 6.9E-05 35.4 9.9 112 75-220 81-204 (219)
121 PRK12331 oxaloacetate decarbox 90.2 6.6 0.00014 37.6 12.8 99 79-181 102-205 (448)
122 PRK14041 oxaloacetate decarbox 90.0 4.1 9E-05 39.2 11.2 99 79-181 101-204 (467)
123 PF00977 His_biosynth: Histidi 89.9 0.85 1.8E-05 39.4 6.0 96 78-178 87-196 (229)
124 cd02810 DHOD_DHPD_FMN Dihydroo 89.9 12 0.00025 33.2 13.4 85 96-182 108-198 (289)
125 PRK11320 prpB 2-methylisocitra 89.7 3.4 7.4E-05 37.3 9.9 44 75-123 168-211 (292)
126 PRK08385 nicotinate-nucleotide 89.6 3.3 7.1E-05 37.2 9.6 68 77-155 193-260 (278)
127 COG2513 PrpB PEP phosphonomuta 89.6 1.6 3.4E-05 39.3 7.4 77 77-166 170-246 (289)
128 PRK05567 inosine 5'-monophosph 89.6 4 8.7E-05 39.3 10.9 66 76-153 230-296 (486)
129 cd02932 OYE_YqiM_FMN Old yello 89.5 16 0.00035 33.2 14.9 72 139-220 160-259 (336)
130 PRK12858 tagatose 1,6-diphosph 89.5 12 0.00025 34.6 13.4 125 82-224 115-276 (340)
131 PLN02417 dihydrodipicolinate s 89.4 3.8 8.2E-05 36.5 9.9 102 66-182 19-134 (280)
132 PF02548 Pantoate_transf: Keto 89.3 10 0.00022 33.7 12.3 114 38-177 77-201 (261)
133 PF00478 IMPDH: IMP dehydrogen 89.2 1.5 3.3E-05 40.5 7.3 83 36-154 94-177 (352)
134 TIGR02317 prpB methylisocitrat 89.1 1.4 3E-05 39.6 6.9 43 76-123 164-206 (285)
135 cd07943 DRE_TIM_HOA 4-hydroxy- 89.1 15 0.00032 32.2 17.1 89 139-242 91-184 (263)
136 TIGR03128 RuMP_HxlA 3-hexulose 89.0 12 0.00027 31.2 15.9 100 67-183 10-113 (206)
137 PRK13585 1-(5-phosphoribosyl)- 89.0 5.1 0.00011 34.4 10.3 102 77-183 89-201 (241)
138 TIGR01093 aroD 3-dehydroquinat 88.9 9.9 0.00021 32.7 11.9 95 83-182 89-188 (228)
139 PRK07896 nicotinate-nucleotide 88.9 2.3 5E-05 38.3 8.1 65 78-155 211-275 (289)
140 cd00502 DHQase_I Type I 3-dehy 88.9 8.7 0.00019 32.9 11.5 101 75-182 78-183 (225)
141 PRK08318 dihydropyrimidine deh 88.9 21 0.00045 33.6 15.9 71 76-155 116-202 (420)
142 PRK00366 ispG 4-hydroxy-3-meth 88.8 19 0.00042 33.3 14.1 118 75-211 44-165 (360)
143 PRK02048 4-hydroxy-3-methylbut 88.5 3.8 8.1E-05 40.5 9.8 50 75-125 43-95 (611)
144 TIGR02151 IPP_isom_2 isopenten 88.5 13 0.00029 34.0 13.1 134 70-226 67-216 (333)
145 PRK08195 4-hyroxy-2-oxovalerat 88.5 20 0.00043 32.9 18.9 159 51-240 10-185 (337)
146 PLN02446 (5-phosphoribosyl)-5- 88.4 6.2 0.00014 35.1 10.4 101 77-180 95-214 (262)
147 TIGR00735 hisF imidazoleglycer 88.3 8.9 0.00019 33.5 11.4 101 78-183 88-207 (254)
148 PF00682 HMGL-like: HMGL-like 88.3 5.7 0.00012 34.0 10.1 121 79-222 73-213 (237)
149 TIGR01463 mtaA_cmuA methyltran 88.3 19 0.00042 32.6 17.8 142 71-240 178-338 (340)
150 PLN02925 4-hydroxy-3-methylbut 88.2 3.7 8E-05 41.2 9.6 50 75-125 112-164 (733)
151 PRK15063 isocitrate lyase; Pro 88.2 24 0.00053 33.6 15.9 132 78-219 166-343 (428)
152 PRK02506 dihydroorotate dehydr 88.0 4.1 9E-05 36.9 9.3 60 114-179 92-163 (310)
153 PRK05848 nicotinate-nucleotide 87.9 2.9 6.3E-05 37.4 8.1 66 77-155 193-258 (273)
154 TIGR02319 CPEP_Pphonmut carbox 87.9 2.1 4.5E-05 38.7 7.2 42 77-123 169-210 (294)
155 COG0826 Collagenase and relate 87.8 6.5 0.00014 36.4 10.5 136 78-224 18-174 (347)
156 PRK09140 2-dehydro-3-deoxy-6-p 87.7 14 0.0003 31.5 11.9 115 78-237 75-199 (206)
157 cd02930 DCR_FMN 2,4-dienoyl-Co 87.6 16 0.00036 33.5 13.2 110 66-178 127-281 (353)
158 cd00452 KDPG_aldolase KDPG and 87.3 9.7 0.00021 31.7 10.6 113 76-230 66-179 (190)
159 COG1038 PycA Pyruvate carboxyl 87.1 12 0.00026 38.5 12.4 93 83-179 640-743 (1149)
160 PF04551 GcpE: GcpE protein; 87.1 1.8 3.9E-05 40.0 6.3 80 77-157 35-142 (359)
161 PRK05718 keto-hydroxyglutarate 87.1 18 0.0004 31.0 12.8 78 67-163 25-103 (212)
162 cd04723 HisA_HisF Phosphoribos 86.9 8.9 0.00019 33.2 10.4 97 77-178 91-194 (233)
163 COG0159 TrpA Tryptophan syntha 86.9 22 0.00048 31.7 15.3 159 75-238 33-228 (265)
164 PRK12858 tagatose 1,6-diphosph 86.8 24 0.00051 32.6 13.6 136 67-220 44-204 (340)
165 cd06556 ICL_KPHMT Members of t 86.8 14 0.00031 32.3 11.7 93 78-179 94-197 (240)
166 cd02931 ER_like_FMN Enoate red 86.8 27 0.00059 32.6 16.8 144 68-219 34-269 (382)
167 PRK06096 molybdenum transport 86.7 4.7 0.0001 36.3 8.8 64 77-153 200-263 (284)
168 TIGR02660 nifV_homocitr homoci 86.7 12 0.00027 34.5 11.9 98 78-181 77-193 (365)
169 TIGR03572 WbuZ glycosyl amidat 86.7 11 0.00025 32.1 11.0 101 78-183 88-205 (232)
170 TIGR01949 AroFGH_arch predicte 86.7 21 0.00045 31.2 15.4 124 78-224 95-227 (258)
171 PF01208 URO-D: Uroporphyrinog 86.6 17 0.00036 32.9 12.5 143 69-239 178-342 (343)
172 cd02803 OYE_like_FMN_family Ol 86.6 19 0.00041 32.4 12.8 145 66-233 131-324 (327)
173 PRK00694 4-hydroxy-3-methylbut 86.5 4.6 0.0001 39.7 9.0 48 76-124 48-98 (606)
174 PRK07428 nicotinate-nucleotide 86.5 4.5 9.8E-05 36.4 8.5 66 77-155 207-272 (288)
175 PRK05692 hydroxymethylglutaryl 86.4 13 0.00029 33.3 11.6 102 78-181 84-207 (287)
176 cd04726 KGPDC_HPS 3-Keto-L-gul 86.4 18 0.00038 30.0 14.0 111 78-222 69-186 (202)
177 cd00953 KDG_aldolase KDG (2-ke 86.2 24 0.00051 31.3 16.5 100 66-182 17-130 (279)
178 PRK01033 imidazole glycerol ph 85.7 11 0.00024 33.1 10.6 101 78-183 88-204 (258)
179 PLN02433 uroporphyrinogen deca 85.3 30 0.00064 31.7 17.3 137 75-240 181-337 (345)
180 TIGR01302 IMP_dehydrog inosine 85.2 22 0.00049 33.9 13.1 67 75-153 225-292 (450)
181 COG0434 SgcQ Predicted TIM-bar 85.1 1.8 3.9E-05 38.0 5.0 77 67-155 28-116 (263)
182 cd03174 DRE_TIM_metallolyase D 85.0 24 0.00052 30.4 14.8 101 76-180 77-197 (265)
183 PRK07565 dihydroorotate dehydr 85.0 30 0.00066 31.5 19.0 133 76-237 117-286 (334)
184 PRK14114 1-(5-phosphoribosyl)- 84.9 9.9 0.00021 33.2 9.8 95 77-178 86-193 (241)
185 PF00682 HMGL-like: HMGL-like 84.9 23 0.00051 30.2 13.0 147 66-240 11-178 (237)
186 PRK00115 hemE uroporphyrinogen 84.9 31 0.00067 31.5 17.4 140 71-239 184-343 (346)
187 PRK08318 dihydropyrimidine deh 84.8 13 0.00027 35.1 11.1 62 114-181 99-176 (420)
188 cd00377 ICL_PEPM Members of th 84.5 27 0.00058 30.5 15.9 143 79-238 22-196 (243)
189 TIGR02320 PEP_mutase phosphoen 84.5 30 0.00066 31.1 13.7 99 78-181 97-219 (285)
190 PRK00125 pyrF orotidine 5'-pho 84.4 16 0.00035 32.7 11.0 159 67-239 35-212 (278)
191 TIGR00259 thylakoid_BtpA membr 84.2 23 0.00051 31.4 11.8 32 66-97 21-52 (257)
192 COG0106 HisA Phosphoribosylfor 84.0 16 0.00036 32.0 10.5 96 77-178 88-196 (241)
193 cd02801 DUS_like_FMN Dihydrour 83.9 25 0.00054 29.7 12.8 134 75-234 69-227 (231)
194 TIGR01334 modD putative molybd 83.8 8.1 0.00018 34.6 8.8 64 77-153 199-262 (277)
195 COG0042 tRNA-dihydrouridine sy 83.8 29 0.00064 31.7 12.7 92 86-184 34-147 (323)
196 PRK08195 4-hyroxy-2-oxovalerat 83.7 33 0.00072 31.5 13.1 96 79-180 94-196 (337)
197 TIGR00262 trpA tryptophan synt 83.6 27 0.00058 30.8 12.0 91 77-178 106-203 (256)
198 PRK13125 trpA tryptophan synth 83.6 29 0.00063 30.1 12.8 89 78-176 93-188 (244)
199 cd00717 URO-D Uroporphyrinogen 83.5 34 0.00074 30.9 17.4 139 71-238 175-334 (335)
200 PLN02495 oxidoreductase, actin 83.2 25 0.00054 33.0 12.1 62 114-181 113-190 (385)
201 cd02803 OYE_like_FMN_family Ol 82.9 11 0.00025 33.8 9.7 65 146-219 153-245 (327)
202 PRK14024 phosphoribosyl isomer 82.9 14 0.00029 32.1 9.8 100 77-184 88-199 (241)
203 PRK05286 dihydroorotate dehydr 82.8 13 0.00028 34.2 10.0 73 74-153 158-244 (344)
204 TIGR01303 IMP_DH_rel_1 IMP deh 82.7 8.2 0.00018 37.2 9.0 67 74-152 225-292 (475)
205 PRK11858 aksA trans-homoaconit 82.7 41 0.00089 31.3 14.8 98 78-181 80-196 (378)
206 TIGR01036 pyrD_sub2 dihydrooro 82.7 39 0.00084 31.0 14.5 101 78-180 71-217 (335)
207 TIGR02320 PEP_mutase phosphoen 82.6 36 0.00079 30.6 13.8 39 201-239 168-207 (285)
208 PTZ00314 inosine-5'-monophosph 82.4 41 0.0009 32.6 13.7 64 76-151 243-307 (495)
209 PLN02424 ketopantoate hydroxym 82.1 42 0.0009 30.9 13.6 114 38-177 96-221 (332)
210 cd06556 ICL_KPHMT Members of t 82.1 33 0.00071 30.0 11.8 132 97-238 56-191 (240)
211 TIGR03128 RuMP_HxlA 3-hexulose 81.9 29 0.00062 28.9 14.4 66 78-154 68-133 (206)
212 TIGR01306 GMP_reduct_2 guanosi 81.7 42 0.00092 30.7 14.6 93 76-183 48-146 (321)
213 PRK09016 quinolinate phosphori 81.6 9.4 0.0002 34.5 8.4 63 77-155 219-281 (296)
214 cd07939 DRE_TIM_NifV Streptomy 81.5 36 0.00077 29.8 15.0 98 78-181 74-190 (259)
215 cd07938 DRE_TIM_HMGL 3-hydroxy 81.5 26 0.00056 31.1 11.2 101 78-180 78-200 (274)
216 PRK13586 1-(5-phosphoribosyl)- 81.5 23 0.00051 30.7 10.7 94 77-176 86-192 (232)
217 cd07940 DRE_TIM_IPMS 2-isoprop 81.4 37 0.0008 29.8 18.0 42 199-241 140-185 (268)
218 TIGR02129 hisA_euk phosphoribo 81.3 22 0.00049 31.4 10.5 101 77-180 88-208 (253)
219 PRK06106 nicotinate-nucleotide 81.3 10 0.00023 34.0 8.6 62 78-155 206-267 (281)
220 cd03307 Mta_CmuA_like MtaA_Cmu 80.9 42 0.00092 30.2 16.7 142 71-238 169-325 (326)
221 TIGR02990 ectoine_eutA ectoine 80.8 13 0.00028 32.5 8.8 99 79-181 112-213 (239)
222 TIGR03217 4OH_2_O_val_ald 4-hy 80.6 22 0.00048 32.6 10.7 98 78-181 92-196 (333)
223 PLN02520 bifunctional 3-dehydr 80.5 27 0.00059 34.1 11.9 98 77-181 101-200 (529)
224 TIGR03151 enACPred_II putative 80.5 19 0.00041 32.6 10.1 87 76-183 77-169 (307)
225 PRK06498 isocitrate lyase; Pro 80.4 3.5 7.6E-05 39.7 5.4 36 83-118 342-378 (531)
226 PF13714 PEP_mutase: Phosphoen 80.3 25 0.00055 30.7 10.5 105 67-181 83-199 (238)
227 PLN02746 hydroxymethylglutaryl 80.1 28 0.00061 32.2 11.2 102 77-180 125-248 (347)
228 cd02811 IDI-2_FMN Isopentenyl- 80.0 40 0.00087 30.7 12.2 131 73-226 69-215 (326)
229 PRK13111 trpA tryptophan synth 80.0 42 0.0009 29.7 11.9 89 78-178 109-205 (258)
230 cd04734 OYE_like_3_FMN Old yel 79.9 49 0.0011 30.3 12.9 112 65-178 130-290 (343)
231 cd04738 DHOD_2_like Dihydrooro 79.9 36 0.00079 30.9 11.9 78 72-156 147-239 (327)
232 PRK06559 nicotinate-nucleotide 79.9 11 0.00024 34.0 8.2 63 77-155 208-270 (290)
233 cd07937 DRE_TIM_PC_TC_5S Pyruv 79.7 44 0.00094 29.6 14.6 154 66-240 18-190 (275)
234 PF00290 Trp_syntA: Tryptophan 79.5 25 0.00053 31.2 10.2 155 75-235 26-218 (259)
235 TIGR01740 pyrF orotidine 5'-ph 79.3 27 0.00058 29.7 10.2 99 78-183 68-167 (213)
236 cd07944 DRE_TIM_HOA_like 4-hyd 79.3 44 0.00096 29.5 17.0 97 79-181 88-191 (266)
237 cd00959 DeoC 2-deoxyribose-5-p 79.3 37 0.0008 28.6 17.0 147 66-239 14-173 (203)
238 cd06557 KPHMT-like Ketopantoat 79.0 4.4 9.6E-05 35.8 5.4 45 67-118 153-197 (254)
239 PRK13575 3-dehydroquinate dehy 78.8 44 0.00095 29.1 12.4 91 85-180 96-193 (238)
240 CHL00200 trpA tryptophan synth 78.7 47 0.001 29.4 12.1 90 78-178 111-207 (263)
241 PLN02495 oxidoreductase, actin 78.6 16 0.00034 34.4 9.1 74 74-156 128-217 (385)
242 COG0826 Collagenase and relate 78.5 16 0.00034 33.8 9.0 75 75-156 81-174 (347)
243 PRK06978 nicotinate-nucleotide 78.5 13 0.00027 33.7 8.2 64 76-155 215-278 (294)
244 TIGR00313 cobQ cobyric acid sy 78.4 27 0.00058 33.7 10.9 84 85-176 121-217 (475)
245 PF13714 PEP_mutase: Phosphoen 77.9 7.9 0.00017 33.8 6.6 44 73-121 155-198 (238)
246 cd04724 Tryptophan_synthase_al 77.8 35 0.00076 29.6 10.7 102 75-182 16-140 (242)
247 PLN02591 tryptophan synthase 77.6 50 0.0011 29.1 12.7 91 77-178 97-194 (250)
248 PRK00311 panB 3-methyl-2-oxobu 77.3 4.9 0.00011 35.7 5.2 45 67-118 156-200 (264)
249 TIGR03326 rubisco_III ribulose 77.3 67 0.0015 30.5 14.3 155 66-239 157-328 (412)
250 PRK06278 cobyrinic acid a,c-di 77.2 18 0.00038 35.0 9.3 93 84-181 315-418 (476)
251 PLN02424 ketopantoate hydroxym 76.9 33 0.00071 31.6 10.4 158 66-237 22-216 (332)
252 PRK02083 imidazole glycerol ph 76.8 44 0.00095 29.0 11.1 99 78-183 88-205 (253)
253 cd04739 DHOD_like Dihydroorota 76.7 20 0.00043 32.7 9.1 15 82-96 32-46 (325)
254 cd03311 CIMS_C_terminal_like C 76.4 59 0.0013 29.3 13.6 141 69-225 151-311 (332)
255 PRK04128 1-(5-phosphoribosyl)- 76.2 29 0.00062 30.0 9.6 72 79-157 88-165 (228)
256 PRK08227 autoinducer 2 aldolas 76.2 57 0.0012 29.0 12.4 116 82-224 103-226 (264)
257 PF03102 NeuB: NeuB family; I 76.2 32 0.00069 30.2 9.9 96 72-178 55-177 (241)
258 cd07940 DRE_TIM_IPMS 2-isoprop 76.1 54 0.0012 28.8 13.3 77 98-180 113-196 (268)
259 TIGR01036 pyrD_sub2 dihydrooro 75.8 39 0.00085 30.9 10.9 78 72-156 153-247 (335)
260 PRK07114 keto-hydroxyglutarate 75.6 53 0.0011 28.4 12.4 33 199-237 120-156 (222)
261 cd07939 DRE_TIM_NifV Streptomy 75.6 54 0.0012 28.6 17.8 44 199-242 136-182 (259)
262 TIGR00126 deoC deoxyribose-pho 75.3 52 0.0011 28.2 15.2 148 66-240 15-175 (211)
263 cd08207 RLP_NonPhot Ribulose b 75.1 77 0.0017 30.0 13.8 101 66-183 156-270 (406)
264 cd01568 QPRTase_NadC Quinolina 75.1 15 0.00034 32.5 7.8 58 82-153 197-254 (269)
265 PRK05742 nicotinate-nucleotide 74.6 19 0.00042 32.2 8.2 62 78-155 201-262 (277)
266 cd04747 OYE_like_5_FMN Old yel 74.5 70 0.0015 29.7 12.2 80 139-224 150-257 (361)
267 cd03312 CIMS_N_terminal_like C 74.5 33 0.00072 31.7 10.1 80 68-157 177-264 (360)
268 cd04733 OYE_like_2_FMN Old yel 74.1 23 0.00049 32.3 8.9 72 138-219 154-253 (338)
269 cd04731 HisF The cyclase subun 73.8 57 0.0012 28.0 10.9 102 78-184 85-202 (243)
270 PRK02412 aroD 3-dehydroquinate 73.8 62 0.0013 28.3 16.5 99 67-170 26-133 (253)
271 CHL00200 trpA tryptophan synth 73.7 47 0.001 29.5 10.4 99 129-238 56-168 (263)
272 PF01791 DeoC: DeoC/LacD famil 73.5 22 0.00047 30.6 8.2 129 78-224 81-230 (236)
273 TIGR03849 arch_ComA phosphosul 73.4 31 0.00068 30.2 9.0 139 85-237 23-183 (237)
274 cd02932 OYE_YqiM_FMN Old yello 73.0 74 0.0016 28.9 13.1 110 66-178 144-295 (336)
275 PRK05692 hydroxymethylglutaryl 72.8 71 0.0015 28.6 15.3 42 199-240 152-196 (287)
276 PRK13523 NADPH dehydrogenase N 72.7 73 0.0016 29.2 11.8 109 66-178 132-280 (337)
277 cd04727 pdxS PdxS is a subunit 72.7 73 0.0016 28.7 12.5 66 72-154 73-139 (283)
278 PRK06543 nicotinate-nucleotide 72.6 21 0.00045 32.1 7.9 63 77-155 204-266 (281)
279 COG0157 NadC Nicotinate-nucleo 72.6 28 0.0006 31.3 8.6 64 77-154 199-262 (280)
280 COG0710 AroD 3-dehydroquinate 72.4 66 0.0014 28.1 11.6 97 75-182 80-185 (231)
281 TIGR02317 prpB methylisocitrat 72.4 74 0.0016 28.6 12.8 97 78-182 93-206 (285)
282 cd01572 QPRTase Quinolinate ph 72.3 20 0.00043 31.9 7.7 62 78-155 194-255 (268)
283 PF02548 Pantoate_transf: Keto 71.8 43 0.00092 29.8 9.6 146 78-232 28-190 (261)
284 PRK13397 3-deoxy-7-phosphohept 71.7 20 0.00044 31.6 7.5 62 114-180 122-191 (250)
285 TIGR00222 panB 3-methyl-2-oxob 71.4 10 0.00022 33.7 5.7 38 67-106 155-192 (263)
286 PRK00748 1-(5-phosphoribosyl)- 71.3 63 0.0014 27.4 11.8 76 79-168 36-120 (233)
287 COG0325 Predicted enzyme with 71.2 51 0.0011 28.7 9.7 81 89-170 94-182 (228)
288 COG0413 PanB Ketopantoate hydr 70.8 77 0.0017 28.2 11.1 113 37-176 75-199 (268)
289 cd06822 PLPDE_III_YBL036c_euk 70.5 31 0.00068 29.9 8.4 67 91-158 92-164 (227)
290 cd00739 DHPS DHPS subgroup of 70.2 77 0.0017 27.9 15.5 98 66-185 21-132 (257)
291 cd04735 OYE_like_4_FMN Old yel 70.2 89 0.0019 28.7 12.2 115 66-183 134-292 (353)
292 cd07948 DRE_TIM_HCS Saccharomy 70.0 78 0.0017 27.9 11.3 97 78-180 76-191 (262)
293 COG0284 PyrF Orotidine-5'-phos 69.9 76 0.0017 27.8 11.4 120 104-238 54-175 (240)
294 PTZ00344 pyridoxal kinase; Pro 69.8 40 0.00087 30.0 9.3 99 54-154 45-146 (296)
295 TIGR02090 LEU1_arch isopropylm 69.7 94 0.002 28.7 18.6 145 66-240 19-182 (363)
296 cd01981 Pchlide_reductase_B Pc 69.6 36 0.00077 32.1 9.3 24 215-238 164-189 (430)
297 PRK07226 fructose-bisphosphate 69.6 79 0.0017 27.8 15.6 126 78-226 98-233 (267)
298 cd04724 Tryptophan_synthase_al 69.5 75 0.0016 27.5 11.8 90 78-178 96-192 (242)
299 PRK04302 triosephosphate isome 69.5 54 0.0012 27.9 9.7 24 78-103 106-129 (223)
300 TIGR01464 hemE uroporphyrinoge 69.5 88 0.0019 28.3 17.0 139 71-238 178-337 (338)
301 TIGR01163 rpe ribulose-phospha 69.4 64 0.0014 26.7 11.5 49 74-123 12-65 (210)
302 TIGR01037 pyrD_sub1_fam dihydr 69.2 83 0.0018 27.9 15.6 69 76-153 106-188 (300)
303 smart00633 Glyco_10 Glycosyl h 68.8 64 0.0014 28.0 10.2 107 67-178 51-187 (254)
304 PRK10481 hypothetical protein; 68.4 39 0.00084 29.3 8.5 105 66-176 70-209 (224)
305 PRK00784 cobyric acid synthase 68.3 73 0.0016 30.7 11.3 101 67-180 111-225 (488)
306 cd01573 modD_like ModD; Quinol 68.2 34 0.00074 30.4 8.4 56 83-151 200-255 (272)
307 PF01180 DHO_dh: Dihydroorotat 68.2 25 0.00054 31.3 7.6 49 73-123 112-171 (295)
308 TIGR00078 nadC nicotinate-nucl 68.2 29 0.00062 30.8 7.8 60 78-153 190-249 (265)
309 TIGR01346 isocit_lyase isocitr 68.2 8.6 0.00019 37.4 4.8 59 85-144 378-439 (527)
310 PLN02892 isocitrate lyase 68.1 8.8 0.00019 37.6 4.8 33 85-117 399-432 (570)
311 TIGR00736 nifR3_rel_arch TIM-b 67.6 83 0.0018 27.4 12.1 103 67-184 78-200 (231)
312 PF01408 GFO_IDH_MocA: Oxidore 67.4 26 0.00057 26.1 6.6 24 85-109 61-84 (120)
313 PRK11320 prpB 2-methylisocitra 67.3 97 0.0021 28.0 12.9 96 78-181 98-210 (292)
314 PRK12999 pyruvate carboxylase; 67.0 36 0.00078 36.6 9.5 86 40-143 669-757 (1146)
315 PRK07028 bifunctional hexulose 66.9 1.2E+02 0.0025 28.7 15.8 89 78-178 73-167 (430)
316 PF07302 AroM: AroM protein; 66.8 22 0.00047 30.8 6.6 39 78-120 170-208 (221)
317 TIGR01496 DHPS dihydropteroate 66.6 91 0.002 27.4 13.4 98 67-185 21-130 (257)
318 PRK09250 fructose-bisphosphate 66.5 1.1E+02 0.0024 28.4 14.0 79 82-164 155-248 (348)
319 PRK07807 inosine 5-monophospha 66.5 75 0.0016 30.7 10.9 66 74-152 227-294 (479)
320 PRK06252 methylcobalamin:coenz 66.5 1E+02 0.0022 27.8 16.3 143 71-239 178-335 (339)
321 cd04747 OYE_like_5_FMN Old yel 66.4 1.1E+02 0.0024 28.4 12.8 113 65-178 133-285 (361)
322 COG5309 Exo-beta-1,3-glucanase 66.1 14 0.00031 33.1 5.3 44 52-98 242-285 (305)
323 TIGR01769 GGGP geranylgeranylg 66.0 17 0.00038 31.0 5.8 139 75-238 13-176 (205)
324 PLN02746 hydroxymethylglutaryl 65.6 1.1E+02 0.0025 28.2 16.2 42 199-240 194-238 (347)
325 cd07941 DRE_TIM_LeuA3 Desulfob 65.5 97 0.0021 27.3 18.7 43 200-242 149-194 (273)
326 cd06824 PLPDE_III_Yggs_like Py 65.2 44 0.00096 28.5 8.3 65 91-156 95-162 (224)
327 TIGR00262 trpA tryptophan synt 65.1 97 0.0021 27.2 17.8 91 76-171 27-139 (256)
328 PF01136 Peptidase_U32: Peptid 64.9 62 0.0014 27.4 9.2 82 75-175 4-86 (233)
329 TIGR01182 eda Entner-Doudoroff 64.9 89 0.0019 26.7 12.5 105 78-227 72-181 (204)
330 TIGR03855 NAD_NadX aspartate d 64.8 21 0.00045 31.0 6.2 45 73-120 48-95 (229)
331 PRK09121 5-methyltetrahydropte 64.7 75 0.0016 29.1 10.2 142 69-225 152-312 (339)
332 PF00290 Trp_syntA: Tryptophan 64.7 72 0.0016 28.3 9.6 93 75-178 104-203 (259)
333 PRK04452 acetyl-CoA decarbonyl 64.4 98 0.0021 28.4 10.6 52 70-122 65-132 (319)
334 PRK08508 biotin synthase; Prov 64.1 1E+02 0.0023 27.2 14.0 74 66-154 40-119 (279)
335 cd08213 RuBisCO_large_III Ribu 64.0 1.4E+02 0.0029 28.5 16.4 152 66-239 144-314 (412)
336 PLN00124 succinyl-CoA ligase [ 64.0 65 0.0014 30.6 9.8 67 66-144 328-398 (422)
337 TIGR00737 nifR3_yhdG putative 63.8 1.1E+02 0.0024 27.5 12.5 107 67-184 73-201 (319)
338 PRK00957 methionine synthase; 63.5 1.1E+02 0.0024 27.3 14.3 132 68-225 139-282 (305)
339 CHL00040 rbcL ribulose-1,5-bis 63.5 1.5E+02 0.0032 28.8 15.6 147 66-233 180-345 (475)
340 PRK07114 keto-hydroxyglutarate 63.4 99 0.0022 26.7 11.2 65 132-221 119-187 (222)
341 cd02072 Glm_B12_BD B12 binding 63.4 73 0.0016 25.2 9.2 84 131-232 35-124 (128)
342 TIGR02311 HpaI 2,4-dihydroxyhe 63.3 48 0.001 29.0 8.3 81 78-169 25-107 (249)
343 cd02809 alpha_hydroxyacid_oxid 63.1 66 0.0014 28.8 9.3 90 76-179 84-178 (299)
344 cd04734 OYE_like_3_FMN Old yel 62.9 99 0.0022 28.3 10.6 140 69-224 33-254 (343)
345 PRK06052 5-methyltetrahydropte 62.1 1.2E+02 0.0027 28.0 10.9 142 69-226 142-318 (344)
346 TIGR00044 pyridoxal phosphate 62.0 1E+02 0.0022 26.4 10.3 64 92-156 98-164 (229)
347 PLN02716 nicotinate-nucleotide 62.0 37 0.00081 30.9 7.4 63 78-155 215-291 (308)
348 TIGR02319 CPEP_Pphonmut carbox 62.0 1.2E+02 0.0027 27.3 12.3 91 78-176 97-204 (294)
349 PRK07094 biotin synthase; Prov 61.8 43 0.00093 30.1 7.9 74 76-154 129-215 (323)
350 cd02933 OYE_like_FMN Old yello 61.8 91 0.002 28.6 10.1 92 139-237 158-284 (338)
351 cd07941 DRE_TIM_LeuA3 Desulfob 61.8 1.1E+02 0.0025 26.9 14.7 100 78-181 83-203 (273)
352 PF08267 Meth_synt_1: Cobalami 61.7 65 0.0014 29.3 9.0 87 68-164 176-270 (310)
353 cd03465 URO-D_like The URO-D _ 61.6 1.2E+02 0.0026 27.0 16.4 143 69-238 164-329 (330)
354 COG0796 MurI Glutamate racemas 61.6 1.2E+02 0.0026 27.1 15.4 92 61-171 43-137 (269)
355 PRK04208 rbcL ribulose bisopho 61.4 1.6E+02 0.0035 28.5 17.7 152 66-238 173-343 (468)
356 cd02931 ER_like_FMN Enoate red 61.4 1.3E+02 0.0027 28.1 11.2 112 66-178 140-310 (382)
357 PRK10415 tRNA-dihydrouridine s 61.2 1.3E+02 0.0028 27.3 12.8 107 67-184 75-203 (321)
358 TIGR02635 RhaI_grampos L-rhamn 61.1 52 0.0011 30.8 8.5 96 69-171 154-269 (378)
359 PRK00278 trpC indole-3-glycero 60.9 58 0.0013 28.7 8.4 63 78-155 125-188 (260)
360 KOG0369 Pyruvate carboxylase [ 60.8 47 0.001 33.8 8.3 89 58-154 703-794 (1176)
361 COG5016 Pyruvate/oxaloacetate 60.6 24 0.00051 33.5 6.0 74 73-155 156-232 (472)
362 PRK09722 allulose-6-phosphate 60.4 1.1E+02 0.0025 26.5 15.3 80 78-169 74-157 (229)
363 smart00633 Glyco_10 Glycosyl h 60.3 29 0.00063 30.2 6.4 52 72-125 135-194 (254)
364 TIGR02090 LEU1_arch isopropylm 60.3 1.4E+02 0.0031 27.5 13.8 98 78-181 76-192 (363)
365 TIGR01859 fruc_bis_ald_ fructo 60.0 1.3E+02 0.0028 26.9 14.6 103 77-184 88-211 (282)
366 PRK08005 epimerase; Validated 59.8 1.1E+02 0.0023 26.3 9.5 80 78-170 73-156 (210)
367 TIGR01371 met_syn_B12ind 5-met 59.4 2E+02 0.0044 29.5 13.0 134 68-224 173-317 (750)
368 COG3457 Predicted amino acid r 59.3 1.1E+02 0.0025 28.1 9.9 77 85-167 92-183 (353)
369 PRK12331 oxaloacetate decarbox 59.2 74 0.0016 30.5 9.3 64 73-143 154-220 (448)
370 PRK01261 aroD 3-dehydroquinate 59.0 62 0.0013 28.1 8.1 49 67-122 31-84 (229)
371 PRK05835 fructose-bisphosphate 59.0 90 0.0019 28.4 9.4 103 132-239 154-272 (307)
372 PRK04452 acetyl-CoA decarbonyl 59.0 92 0.002 28.5 9.5 96 137-237 79-193 (319)
373 cd00429 RPE Ribulose-5-phospha 58.6 1E+02 0.0022 25.3 10.2 49 75-124 14-67 (211)
374 PRK13753 dihydropteroate synth 58.4 1.4E+02 0.003 26.8 13.3 111 41-183 4-129 (279)
375 TIGR00379 cobB cobyrinic acid 58.3 1.4E+02 0.0031 28.3 11.2 105 67-183 63-179 (449)
376 TIGR01235 pyruv_carbox pyruvat 58.3 24 0.00051 37.9 6.3 65 72-143 688-755 (1143)
377 COG0279 GmhA Phosphoheptose is 58.3 39 0.00083 28.2 6.2 53 73-128 97-149 (176)
378 COG0159 TrpA Tryptophan syntha 58.2 1E+02 0.0022 27.5 9.4 85 82-178 118-210 (265)
379 TIGR01306 GMP_reduct_2 guanosi 57.8 1.5E+02 0.0033 27.1 12.4 94 77-184 97-207 (321)
380 PRK10558 alpha-dehydro-beta-de 57.6 1.1E+02 0.0024 26.9 9.5 78 78-168 32-113 (256)
381 COG3010 NanE Putative N-acetyl 57.6 1E+02 0.0022 26.7 8.8 139 78-233 38-198 (229)
382 cd04729 NanE N-acetylmannosami 57.6 81 0.0017 26.6 8.5 63 107-178 3-65 (219)
383 PF03481 SUA5: Putative GTP-bi 57.6 16 0.00035 28.3 3.9 45 67-111 79-123 (125)
384 PRK05718 keto-hydroxyglutarate 57.4 1.2E+02 0.0027 25.9 12.2 100 78-221 79-182 (212)
385 PRK15447 putative protease; Pr 57.3 1.1E+02 0.0023 27.5 9.7 46 70-121 16-68 (301)
386 TIGR00035 asp_race aspartate r 57.3 1.2E+02 0.0026 25.9 9.6 135 67-222 56-195 (229)
387 PRK08255 salicylyl-CoA 5-hydro 57.2 2.1E+02 0.0045 29.3 12.7 111 66-179 541-693 (765)
388 PF07287 DUF1446: Protein of u 56.7 1.1E+02 0.0024 28.6 9.7 142 52-219 1-164 (362)
389 COG1038 PycA Pyruvate carboxyl 56.7 24 0.00051 36.5 5.6 72 71-151 692-766 (1149)
390 PRK12581 oxaloacetate decarbox 56.6 51 0.0011 31.8 7.7 65 72-143 162-229 (468)
391 COG0269 SgbH 3-hexulose-6-phos 56.5 1.3E+02 0.0029 26.0 13.4 153 66-235 13-183 (217)
392 PRK14847 hypothetical protein; 56.4 1.6E+02 0.0035 27.2 10.6 77 104-181 156-248 (333)
393 TIGR02660 nifV_homocitr homoci 56.3 1.7E+02 0.0036 27.1 18.5 144 66-240 20-183 (365)
394 PRK06552 keto-hydroxyglutarate 56.3 1.3E+02 0.0028 25.7 13.5 26 212-237 126-153 (213)
395 COG1646 Predicted phosphate-bi 56.2 67 0.0015 28.2 7.7 63 118-184 16-81 (240)
396 cd00452 KDPG_aldolase KDPG and 56.2 59 0.0013 26.9 7.3 59 83-155 114-172 (190)
397 TIGR03239 GarL 2-dehydro-3-deo 56.2 1.2E+02 0.0026 26.5 9.6 78 78-168 25-106 (249)
398 cd02067 B12-binding B12 bindin 56.1 51 0.0011 24.8 6.4 40 131-171 35-77 (119)
399 cd04741 DHOD_1A_like Dihydroor 55.9 1.5E+02 0.0033 26.4 13.7 127 86-238 119-291 (294)
400 cd02070 corrinoid_protein_B12- 55.8 44 0.00094 28.1 6.5 40 131-171 118-160 (201)
401 cd04733 OYE_like_2_FMN Old yel 55.7 1.6E+02 0.0035 26.7 12.4 110 66-178 139-297 (338)
402 TIGR03586 PseI pseudaminic aci 55.4 1.5E+02 0.0032 27.3 10.3 99 72-178 76-198 (327)
403 PRK01130 N-acetylmannosamine-6 55.4 1.3E+02 0.0028 25.4 10.2 55 116-177 6-60 (221)
404 PRK05567 inosine 5'-monophosph 55.0 1E+02 0.0022 29.8 9.6 62 136-219 230-294 (486)
405 PRK15452 putative protease; Pr 54.9 92 0.002 29.8 9.2 43 75-124 78-120 (443)
406 cd00331 IGPS Indole-3-glycerol 54.9 1.3E+02 0.0028 25.3 12.7 141 78-236 36-193 (217)
407 TIGR01278 DPOR_BchB light-inde 54.5 1.3E+02 0.0028 29.2 10.3 26 131-157 100-125 (511)
408 TIGR01093 aroD 3-dehydroquinat 54.5 1.4E+02 0.003 25.5 14.0 144 78-236 17-170 (228)
409 TIGR01417 PTS_I_fam phosphoeno 54.3 2.3E+02 0.005 28.0 14.6 39 72-110 366-407 (565)
410 TIGR02321 Pphn_pyruv_hyd phosp 54.2 1.7E+02 0.0036 26.4 12.1 98 78-180 95-212 (290)
411 cd04735 OYE_like_4_FMN Old yel 54.0 1.8E+02 0.0039 26.7 12.2 72 139-220 150-253 (353)
412 cd04726 KGPDC_HPS 3-Keto-L-gul 54.0 1.2E+02 0.0027 24.8 14.5 101 67-184 11-115 (202)
413 cd06843 PLPDE_III_PvsE_like Ty 53.9 90 0.002 28.7 8.8 73 80-155 85-171 (377)
414 PRK08575 5-methyltetrahydropte 53.9 1.5E+02 0.0033 26.9 10.2 138 69-230 157-308 (326)
415 COG0413 PanB Ketopantoate hydr 53.8 1.6E+02 0.0035 26.2 9.8 142 78-232 27-189 (268)
416 cd08209 RLP_DK-MTP-1-P-enolase 53.8 2E+02 0.0043 27.2 16.2 152 66-239 137-307 (391)
417 TIGR01740 pyrF orotidine 5'-ph 53.8 1.4E+02 0.0029 25.3 12.7 114 103-238 40-157 (213)
418 COG0167 PyrD Dihydroorotate de 53.8 1.8E+02 0.0038 26.6 14.4 70 78-156 114-196 (310)
419 cd02933 OYE_like_FMN Old yello 53.7 1.8E+02 0.0039 26.6 12.6 109 68-178 147-290 (338)
420 PRK12330 oxaloacetate decarbox 53.6 50 0.0011 32.1 7.2 65 73-143 155-223 (499)
421 PF00107 ADH_zinc_N: Zinc-bind 53.3 69 0.0015 24.0 6.8 83 75-169 46-129 (130)
422 cd06818 PLPDE_III_cryptic_DSD 53.2 1.2E+02 0.0026 28.1 9.5 74 78-156 88-167 (382)
423 TIGR02708 L_lactate_ox L-lacta 53.0 94 0.002 29.0 8.7 80 77-170 240-336 (367)
424 TIGR00284 dihydropteroate synt 53.0 2.3E+02 0.005 27.7 12.6 48 73-123 165-215 (499)
425 PRK11572 copper homeostasis pr 52.8 1.6E+02 0.0036 25.9 18.8 109 67-185 68-180 (248)
426 cd01573 modD_like ModD; Quinol 52.8 1.7E+02 0.0036 26.0 10.7 64 134-220 192-256 (272)
427 COG1830 FbaB DhnA-type fructos 52.6 1.7E+02 0.0037 26.1 11.5 94 78-184 48-156 (265)
428 KOG2949 Ketopantoate hydroxyme 52.3 1.7E+02 0.0036 25.8 10.6 83 74-160 118-211 (306)
429 PF00463 ICL: Isocitrate lyase 52.2 32 0.00069 33.5 5.5 45 78-125 371-416 (526)
430 PRK14041 oxaloacetate decarbox 52.2 51 0.0011 31.8 7.0 65 72-143 152-219 (467)
431 cd01966 Nitrogenase_NifN_1 Nit 52.2 99 0.0021 29.2 8.9 24 215-239 159-182 (417)
432 PRK10128 2-keto-3-deoxy-L-rham 52.1 1.6E+02 0.0036 26.1 9.8 79 78-169 31-113 (267)
433 TIGR00036 dapB dihydrodipicoli 52.0 42 0.0009 29.6 6.0 49 73-123 79-127 (266)
434 PRK08610 fructose-bisphosphate 51.9 1.1E+02 0.0024 27.5 8.7 26 130-157 85-110 (286)
435 PF01113 DapB_N: Dihydrodipico 51.8 26 0.00057 27.0 4.2 44 200-244 76-119 (124)
436 PF07745 Glyco_hydro_53: Glyco 51.7 2E+02 0.0043 26.5 14.8 152 3-182 58-242 (332)
437 PLN02826 dihydroorotate dehydr 51.7 2.2E+02 0.0047 27.0 14.6 143 69-238 200-389 (409)
438 PRK08255 salicylyl-CoA 5-hydro 51.6 1.2E+02 0.0025 31.1 9.9 71 139-219 557-655 (765)
439 PRK14042 pyruvate carboxylase 51.5 58 0.0013 32.5 7.4 64 73-143 154-220 (596)
440 cd01129 PulE-GspE PulE/GspE Th 51.5 97 0.0021 27.2 8.3 59 74-144 137-195 (264)
441 PRK06801 hypothetical protein; 50.8 1.9E+02 0.0041 26.0 13.4 105 78-185 89-215 (286)
442 TIGR02026 BchE magnesium-proto 50.7 2.4E+02 0.0051 27.2 11.4 95 75-171 257-365 (497)
443 TIGR01108 oadA oxaloacetate de 50.6 1.1E+02 0.0023 30.5 9.1 64 73-143 149-215 (582)
444 PRK10605 N-ethylmaleimide redu 50.6 2.1E+02 0.0045 26.5 11.4 112 65-178 148-297 (362)
445 PRK07709 fructose-bisphosphate 50.5 1.4E+02 0.0031 26.8 9.2 26 130-157 85-110 (285)
446 PRK12595 bifunctional 3-deoxy- 50.5 72 0.0016 29.6 7.5 101 73-180 169-294 (360)
447 TIGR02370 pyl_corrinoid methyl 50.4 58 0.0013 27.3 6.4 42 129-171 118-162 (197)
448 COG3010 NanE Putative N-acetyl 50.2 1.3E+02 0.0029 26.0 8.4 105 115-236 15-122 (229)
449 TIGR01361 DAHP_synth_Bsub phos 49.9 81 0.0018 27.8 7.5 62 114-180 132-201 (260)
450 COG0673 MviM Predicted dehydro 49.6 37 0.0008 30.2 5.4 63 82-156 63-128 (342)
451 TIGR01430 aden_deam adenosine 49.4 1.9E+02 0.0042 25.8 13.6 28 66-95 65-92 (324)
452 cd00423 Pterin_binding Pterin 49.2 1.8E+02 0.0039 25.3 15.5 115 41-184 3-131 (258)
453 PF03060 NMO: Nitronate monoox 49.1 1.9E+02 0.0042 26.2 10.1 86 75-178 102-195 (330)
454 TIGR01862 N2-ase-Ialpha nitrog 48.9 1.6E+02 0.0034 28.0 9.7 58 96-156 100-158 (443)
455 COG0352 ThiE Thiamine monophos 48.9 1.7E+02 0.0037 25.0 10.3 142 76-236 24-178 (211)
456 TIGR01769 GGGP geranylgeranylg 48.6 59 0.0013 27.8 6.2 51 133-184 11-64 (205)
457 cd00331 IGPS Indole-3-glycerol 48.6 1.6E+02 0.0035 24.6 11.2 65 114-179 10-78 (217)
458 TIGR00640 acid_CoA_mut_C methy 48.4 31 0.00066 27.2 4.1 39 199-240 40-80 (132)
459 cd03309 CmuC_like CmuC_like. P 48.4 2.1E+02 0.0046 26.0 17.0 140 74-238 156-320 (321)
460 TIGR03569 NeuB_NnaB N-acetylne 48.3 1.2E+02 0.0025 28.0 8.4 100 73-181 76-201 (329)
461 cd01965 Nitrogenase_MoFe_beta_ 47.9 94 0.002 29.2 8.0 23 215-238 157-179 (428)
462 cd07945 DRE_TIM_CMS Leptospira 47.7 2E+02 0.0044 25.5 11.0 101 78-181 79-199 (280)
463 TIGR00676 fadh2 5,10-methylene 47.7 2E+02 0.0043 25.4 10.4 40 83-122 154-193 (272)
464 PRK04165 acetyl-CoA decarbonyl 47.6 2.7E+02 0.0058 26.8 12.2 31 86-117 127-158 (450)
465 PF07905 PucR: Purine cataboli 47.5 56 0.0012 25.1 5.5 48 134-182 60-108 (123)
466 PRK06464 phosphoenolpyruvate s 47.2 3.5E+02 0.0075 28.0 12.9 39 73-111 617-661 (795)
467 COG1856 Uncharacterized homolo 46.8 50 0.0011 29.0 5.4 28 3-50 205-232 (275)
468 PRK09140 2-dehydro-3-deoxy-6-p 46.8 1.8E+02 0.0039 24.6 13.1 38 67-110 20-57 (206)
469 cd08208 RLP_Photo Ribulose bis 46.7 2.7E+02 0.0058 26.6 14.0 148 66-238 173-339 (424)
470 PRK09282 pyruvate carboxylase 46.7 70 0.0015 31.8 7.2 64 73-143 154-220 (592)
471 PF03932 CutC: CutC family; I 46.6 1.8E+02 0.004 24.7 10.7 109 67-184 67-179 (201)
472 PRK13396 3-deoxy-7-phosphohept 46.5 92 0.002 28.9 7.5 63 114-181 208-279 (352)
473 cd00381 IMPDH IMPDH: The catal 46.5 73 0.0016 29.0 6.8 16 77-92 147-162 (325)
474 PRK06015 keto-hydroxyglutarate 46.4 1.8E+02 0.004 24.7 11.9 128 72-241 15-146 (201)
475 COG0036 Rpe Pentose-5-phosphat 46.3 1.9E+02 0.0042 25.1 8.9 66 78-156 76-143 (220)
476 cd08206 RuBisCO_large_I_II_III 46.2 2.7E+02 0.0058 26.5 17.2 150 66-239 145-316 (414)
477 PF01081 Aldolase: KDPG and KH 46.2 1.8E+02 0.004 24.6 10.0 111 78-228 72-182 (196)
478 PRK12435 ferrochelatase; Provi 46.2 79 0.0017 28.7 7.0 70 160-239 233-305 (311)
479 PRK01033 imidazole glycerol ph 46.0 2E+02 0.0044 25.0 11.8 77 78-168 35-120 (258)
480 PRK08673 3-deoxy-7-phosphohept 45.8 1.6E+02 0.0034 27.2 8.9 98 79-183 150-272 (335)
481 cd01971 Nitrogenase_VnfN_like 45.7 1.6E+02 0.0035 27.7 9.3 57 96-157 69-126 (427)
482 TIGR01304 IMP_DH_rel_2 IMP deh 45.7 81 0.0017 29.5 7.0 64 75-152 144-214 (369)
483 KOG1579 Homocysteine S-methylt 45.7 2.4E+02 0.0053 25.8 11.5 115 35-170 188-314 (317)
484 PF01180 DHO_dh: Dihydroorotat 45.3 63 0.0014 28.7 6.2 62 114-181 96-170 (295)
485 PRK10773 murF UDP-N-acetylmura 45.1 52 0.0011 31.2 5.9 37 36-91 353-389 (453)
486 PRK02615 thiamine-phosphate py 44.9 2.6E+02 0.0056 25.9 10.5 87 75-166 159-258 (347)
487 cd02930 DCR_FMN 2,4-dienoyl-Co 44.8 2.5E+02 0.0054 25.7 15.7 135 69-219 33-241 (353)
488 cd01571 NAPRTase_B Nicotinate 44.4 1.5E+02 0.0033 26.7 8.5 26 86-111 211-241 (302)
489 cd02071 MM_CoA_mut_B12_BD meth 44.3 97 0.0021 23.6 6.4 39 132-171 36-77 (122)
490 PRK05096 guanosine 5'-monophos 44.1 1.5E+02 0.0032 27.6 8.3 67 76-154 110-181 (346)
491 PRK04326 methionine synthase; 43.9 2.4E+02 0.0052 25.3 14.7 134 69-227 157-302 (330)
492 PRK09310 aroDE bifunctional 3- 43.9 3E+02 0.0066 26.4 11.6 87 78-176 71-159 (477)
493 COG1646 Predicted phosphate-bi 43.8 52 0.0011 28.8 5.1 47 74-121 29-77 (240)
494 PF02679 ComA: (2R)-phospho-3- 43.5 1.1E+02 0.0024 27.0 7.1 121 85-219 36-164 (244)
495 PF09587 PGA_cap: Bacterial ca 43.5 69 0.0015 27.7 6.0 59 159-231 171-229 (250)
496 PRK05222 5-methyltetrahydropte 43.3 1.6E+02 0.0034 30.3 9.3 87 68-164 179-274 (758)
497 TIGR03699 mena_SCO4550 menaqui 43.1 2.5E+02 0.0055 25.3 11.0 140 66-239 72-221 (340)
498 PRK12737 gatY tagatose-bisphos 43.0 1.8E+02 0.0039 26.1 8.7 53 132-185 154-214 (284)
499 PRK14040 oxaloacetate decarbox 42.9 84 0.0018 31.3 7.1 65 72-143 154-221 (593)
500 PRK11579 putative oxidoreducta 42.9 81 0.0017 28.6 6.6 47 73-122 75-123 (346)
No 1
>PLN02489 homocysteine S-methyltransferase
Probab=100.00 E-value=6.5e-61 Score=436.07 Aligned_cols=237 Identities=75% Similarity=1.239 Sum_probs=208.9
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 025860 1 MLRRSVEIAREARDMYFERCSKSSCDSVTDDRIPKHRPILVAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQ 80 (247)
Q Consensus 1 l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~g~eY~g~y~~~~s~~e~~~~~~~q~~ 80 (247)
|+++||+||++|+++|..+++..++ .+..+...+++++|+|||||+|+++.+|+||+|+|++++++++++++|++|++
T Consensus 97 l~~~av~lA~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~~~~~~qi~ 174 (335)
T PLN02489 97 LLRKSVEIACEARDIFWDKCQKGST--SRPGRELSYRPILVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQ 174 (335)
T ss_pred HHHHHHHHHHHHHHHHhhhcccccc--cccccccCCCCcEEEEEcCCccccccCCcccCCCCccCCCHHHHHHHHHHHHH
Confidence 5789999999999987543211100 01112233457999999999999999999999999977899999999999999
Q ss_pred HHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCCChhH
Q 025860 81 VLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTPPRF 160 (247)
Q Consensus 81 ~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~~p~~ 160 (247)
.|+++|||+|+|||||++.|++++++++++.+.++|+|+||+++++++|.+|+++.+++..+.+..++++||+||++|+.
T Consensus 175 ~l~~~gvD~i~~ET~~~l~E~~a~~~~~~~~~~~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGiNC~~p~~ 254 (335)
T PLN02489 175 VLAEAGPDLIAFETIPNKLEAQAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLECASIADSCKKVVAVGINCTPPRF 254 (335)
T ss_pred HHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCCCeEEEEEEeCCCCccCCCCcHHHHHHHHHhcCCceEEEecCCCHHH
Confidence 99999999999999999999999999999875569999999999999999999999999988754578999999999999
Q ss_pred HHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEEeecCCCChHHHHHHHHHhhC
Q 025860 161 ISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCRTTPNTIKGIYRTLSN 239 (247)
Q Consensus 161 ~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iIGGCCGt~P~hI~al~~~l~~ 239 (247)
+.++|+.++...+.||++|||+|.+|+...+.|......+|++|++++++|++.|++||||||||||+||++|++.|++
T Consensus 255 ~~~~l~~l~~~~~~pl~vyPNaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~iIGGCCgt~P~hI~al~~~l~~ 333 (335)
T PLN02489 255 IHGLILSIRKVTSKPIVVYPNSGETYDGEAKEWVESTGVSDEDFVSYVNKWRDAGASLIGGCCRTTPNTIRAISKALSE 333 (335)
T ss_pred HHHHHHHHHhhcCCcEEEECCCCCCCCCccCcccCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCCHHHHHHHHHHHhc
Confidence 9999999998888999999999999988777887554567999999999999999999999999999999999999874
No 2
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=100.00 E-value=4.6e-57 Score=406.43 Aligned_cols=216 Identities=49% Similarity=0.883 Sum_probs=196.6
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 025860 1 MLRRSVEIAREARDMYFERCSKSSCDSVTDDRIPKHRPILVAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQ 80 (247)
Q Consensus 1 l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~g~eY~g~y~~~~s~~e~~~~~~~q~~ 80 (247)
|+++||+||++|++++. ..+++|+|||||+|.++.+|+||+|+|. +++++++++|++|++
T Consensus 88 l~~~av~lA~~a~~~~~------------------~~~~~VaGsiGP~g~~l~~~~~y~g~~~--~~~~~~~~~~~~q~~ 147 (304)
T PRK09485 88 LIRRSVELAKEARDEFW------------------AEKPLVAGSVGPYGAYLADGSEYRGDYG--LSEEELQDFHRPRIE 147 (304)
T ss_pred HHHHHHHHHHHHHHhhc------------------cCCceEEEecCCcccccCCCCCCCCCCC--CCHHHHHHHHHHHHH
Confidence 58999999999998851 1258999999999999999999999995 699999999999999
Q ss_pred HHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCCChhH
Q 025860 81 VLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTPPRF 160 (247)
Q Consensus 81 ~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~~p~~ 160 (247)
+|.++|||+|+|||++++.|++++++++++...++|+|+||+++++++|++|+++++++..+.+...+++||+||++|+.
T Consensus 148 ~l~~~gvD~i~~ET~~~~~E~~~~~~~~~~~~~~~pv~is~~~~~~g~l~~G~~~~~~~~~l~~~~~~~~iGiNC~~p~~ 227 (304)
T PRK09485 148 ALAEAGADLLACETIPNLDEAEALVELLKEEFPGVPAWLSFTLRDGTHISDGTPLAEAAALLAASPQVVAVGVNCTAPEL 227 (304)
T ss_pred HHhhCCCCEEEEeccCCHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcCCCCCCHHHHHHHHhcCCCceEEEecCCCHHH
Confidence 99999999999999999999999999999653469999999999999999999999999999764468999999999999
Q ss_pred HHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEEeecCCCChHHHHHHHHHhh
Q 025860 161 ISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCRTTPNTIKGIYRTLS 238 (247)
Q Consensus 161 ~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iIGGCCGt~P~hI~al~~~l~ 238 (247)
+.++|+.+....+.|+++|||+|.+++...+.|... .++++|++++++|++.|++||||||||||+||++|++.++
T Consensus 228 ~~~~l~~~~~~~~~pl~~~PNaG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~G~~iiGGCCGttP~hI~al~~~l~ 303 (304)
T PRK09485 228 VTAAIAALRAVTDKPLVVYPNSGEVYDAVTKTWHGP--ADDASLGELAPEWYAAGARLIGGCCRTTPEDIAALAAALK 303 (304)
T ss_pred HHHHHHHHHhccCCcEEEECCCCCCCCCCCCcccCC--CChHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHHHHHHhh
Confidence 999999998878899999999999888766778653 2466899999999999999999999999999999999875
No 3
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-56 Score=392.49 Aligned_cols=222 Identities=41% Similarity=0.725 Sum_probs=202.1
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 025860 1 MLRRSVEIAREARDMYFERCSKSSCDSVTDDRIPKHRPILVAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQ 80 (247)
Q Consensus 1 l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~g~eY~g~y~~~~s~~e~~~~~~~q~~ 80 (247)
++++++++|+.|++++..++ -+|+||+||+|++++||+||+|+|.++.++++++++|++|++
T Consensus 94 l~~~s~~~a~~Are~~~~~~------------------~~v~gsiGp~~A~l~~g~eytg~Y~~~~~~~el~~~~k~qle 155 (317)
T KOG1579|consen 94 LYEKSVELADLARERLGEET------------------GYVAGSIGPYGATLADGSEYTGIYGDNVEFEELYDFFKQQLE 155 (317)
T ss_pred HHHHHHHHHHHHHHHhcccc------------------ceeeeecccccceecCCcccccccccccCHHHHHHHHHHHHH
Confidence 47899999999999984321 199999999999999999999999999999999999999999
Q ss_pred HHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCCChhH
Q 025860 81 VLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTPPRF 160 (247)
Q Consensus 81 ~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~~p~~ 160 (247)
.|.++|||+|+|||+|+..|++++++++++..+++|+|+||++.+++++++|+++++++..+.+..++.+|||||++|..
T Consensus 156 ~~~~~gvD~L~fETip~~~EA~a~l~~l~~~~~~~p~~is~t~~d~g~l~~G~t~e~~~~~~~~~~~~~~IGvNC~~~~~ 235 (317)
T KOG1579|consen 156 VFLEAGVDLLAFETIPNVAEAKAALELLQELGPSKPFWISFTIKDEGRLRSGETGEEAAQLLKDGINLLGIGVNCVSPNF 235 (317)
T ss_pred HHHhCCCCEEEEeecCCHHHHHHHHHHHHhcCCCCcEEEEEEecCCCcccCCCcHHHHHHHhccCCceEEEEeccCCchh
Confidence 99999999999999999999999999999976689999999999999999999999999987765459999999999888
Q ss_pred HHHHHHHHH-hhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEEeecCCCChHHHHHHHHHhhC
Q 025860 161 ISGLILIIK-KVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCRTTPNTIKGIYRTLSN 239 (247)
Q Consensus 161 ~~~~l~~l~-~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iIGGCCGt~P~hI~al~~~l~~ 239 (247)
+.+++..+. ...+.||+||||+|..||...+.|.+.. ...++|..++++|++.|++||||||||+|.||++|++++++
T Consensus 236 ~~~~~~~L~~~~~~~~llvYPNsGe~yd~~~g~~~~~~-~~~~~~~~~~~~~~~lGv~iIGGCCrt~P~~I~aI~e~v~~ 314 (317)
T KOG1579|consen 236 VEPLLKELMAKLTKIPLLVYPNSGEVYDNEKGGWIPTP-FGLEPWQTYVKKAIDLGVRIIGGCCRTTPKHIRAIAEAVKK 314 (317)
T ss_pred ccHHHHHHhhccCCCeEEEecCCCCCCccccCcccCCC-cccchHHHHHHHHHhcccceeCcccCCChHHHHHHHHHhhc
Confidence 888888887 5578999999999999999888898652 34566999999999999999999999999999999999986
Q ss_pred CC
Q 025860 240 RS 241 (247)
Q Consensus 240 ~~ 241 (247)
..
T Consensus 315 ~~ 316 (317)
T KOG1579|consen 315 YR 316 (317)
T ss_pred cc
Confidence 43
No 4
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-55 Score=382.36 Aligned_cols=215 Identities=43% Similarity=0.770 Sum_probs=196.8
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 025860 1 MLRRSVEIAREARDMYFERCSKSSCDSVTDDRIPKHRPILVAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQ 80 (247)
Q Consensus 1 l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~g~eY~g~y~~~~s~~e~~~~~~~q~~ 80 (247)
+++++|+||++||++|-. ....|+|||||+|+++.+ ||+|+|+. +.+.+++||+.|++
T Consensus 84 l~~~sv~la~~ard~~g~------------------~~~~iagsiGP~ga~~a~--Ey~g~Y~~--~~d~~~~fh~~rie 141 (300)
T COG2040 84 LIRRSVELARAARDAYGE------------------ENQNIAGSLGPYGAALAD--EYRGDYGA--SQDALYKFHRPRIE 141 (300)
T ss_pred HHHHHHHHHHHHHHHhcc------------------cccccceeccchhhhcCh--hhcCccCc--cHHHHHHHHHHHHH
Confidence 578999999999999842 233489999999999987 99999985 88889999999999
Q ss_pred HHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCCChhH
Q 025860 81 VLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTPPRF 160 (247)
Q Consensus 81 ~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~~p~~ 160 (247)
+|.++|||+|.+||+|++.|++++++++++. ++|+|||||++++++|++|+++.+++..+++..++.++||||++|++
T Consensus 142 ~l~~ag~Dlla~ETip~i~Ea~Aiv~l~~~~--s~p~wISfT~~d~~~lr~Gt~l~eaa~~~~~~~~iaa~gvNC~~p~~ 219 (300)
T COG2040 142 ALNEAGADLLACETLPNITEAEAIVQLVQEF--SKPAWISFTLNDDTRLRDGTPLSEAAAILAGLPNIAALGVNCCHPDH 219 (300)
T ss_pred HHHhCCCcEEeecccCChHHHHHHHHHHHHh--CCceEEEEEeCCCCccCCCccHHHHHHHHhcCcchhheeeccCChhh
Confidence 9999999999999999999999999999998 79999999999999999999999999999876689999999999999
Q ss_pred HHHHHHHH-HhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEEeecCCCChHHHHHHHHHhhC
Q 025860 161 ISGLILII-KKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCRTTPNTIKGIYRTLSN 239 (247)
Q Consensus 161 ~~~~l~~l-~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iIGGCCGt~P~hI~al~~~l~~ 239 (247)
+..+++.+ .....+|++||||+|+.||..++.|.. ....++.|...+++|++.|++||||||+|+|.||++|++.+++
T Consensus 220 ~~a~i~~l~~~~~~~piivYPNSGe~~d~~~k~w~~-p~~~~~~~~~~a~~w~~~GA~iiGGCCrt~p~~I~ei~~~~~~ 298 (300)
T COG2040 220 IPAAIEELSKLLTGKPIIVYPNSGEQYDPAGKTWHG-PALSADSYSTLAKSWVEAGARIIGGCCRTGPAHIAEIAKALKK 298 (300)
T ss_pred hHHHHHHHHhcCCCCceEEcCCcccccCcCCCcCCC-CCCchhHHHHHHHHHHhcccceeeeccCCChHHHHHHHHHHhc
Confidence 99999998 445689999999999999988889974 2356788999999999999999999999999999999999886
Q ss_pred C
Q 025860 240 R 240 (247)
Q Consensus 240 ~ 240 (247)
.
T Consensus 299 ~ 299 (300)
T COG2040 299 A 299 (300)
T ss_pred c
Confidence 4
No 5
>PRK07534 methionine synthase I; Validated
Probab=100.00 E-value=4.7e-52 Score=377.82 Aligned_cols=209 Identities=24% Similarity=0.327 Sum_probs=179.0
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 025860 1 MLRRSVEIAREARDMYFERCSKSSCDSVTDDRIPKHRPILVAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQ 80 (247)
Q Consensus 1 l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~g~eY~g~y~~~~s~~e~~~~~~~q~~ 80 (247)
|+++||+||++|++++ +++++|||||||+|+++.+ +++ ++.+++.++|++|++
T Consensus 86 l~~~av~lAr~a~~~~-------------------~~~~~VaGsIGP~g~~l~~-------~~~-~~~~e~~~~~~~qi~ 138 (336)
T PRK07534 86 LNRAAAEIAREVADKA-------------------GRKVIVAGSVGPTGEIMEP-------MGA-LTHALAVEAFHEQAE 138 (336)
T ss_pred HHHHHHHHHHHHHHhc-------------------CCccEEEEecCCCccccCC-------CCC-CCHHHHHHHHHHHHH
Confidence 5889999999999863 3468999999999998764 332 678899999999999
Q ss_pred HHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhC-CCCeEEEEcCC-Ch
Q 025860 81 VLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESC-KRVVSVGINCT-PP 158 (247)
Q Consensus 81 ~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~-~~~~avG~NC~-~p 158 (247)
.|+++|||+|+|||||++.|++++++++++. ++|+|+||++.++++|.+|+++++++..+... .++++||+||+ +|
T Consensus 139 ~l~~~gvD~l~~ET~p~l~E~~a~~~~~~~~--~~Pv~vSft~~~~g~l~~G~~~~~~~~~~~~~~~~~~avGvNC~~gp 216 (336)
T PRK07534 139 GLKAGGADVLWVETISAPEEIRAAAEAAKLA--GMPWCGTMSFDTAGRTMMGLTPADLADLVEKLGEPPLAFGANCGVGA 216 (336)
T ss_pred HHHhCCCCEEEEeccCCHHHHHHHHHHHHHc--CCeEEEEEEECCCCeeCCCCcHHHHHHHHHhcCCCceEEEecCCCCH
Confidence 9999999999999999999999999999986 69999999999999999999999999998752 25699999999 59
Q ss_pred hHHHHHHHHH-HhhcCCCEEEEeCCCC-cccccccccccCCCCChHHHHHHHHHHHHcCCeEEeecCCCChHHHHHHHHH
Q 025860 159 RFISGLILII-KKVTAKPILIYPNSGE-FYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCRTTPNTIKGIYRT 236 (247)
Q Consensus 159 ~~~~~~l~~l-~~~~~~pl~vyPNaG~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iIGGCCGt~P~hI~al~~~ 236 (247)
+.+.+.+..+ ....+.|+++|||+|. .|+.. .+... .+|+.|++++++|++.|++||||||||||+||++|++.
T Consensus 217 ~~~~~~l~~~~~~~~~~pl~vyPNaG~p~~~~~--~~~~~--~~p~~~~~~~~~~~~~Ga~iIGGCCGTtP~hI~~la~~ 292 (336)
T PRK07534 217 SDLLRTVLGFTAQGPERPIIAKGNAGIPKYVDG--HIHYD--GTPELMAEYAVLARDAGARIIGGCCGTMPEHLAAMRAA 292 (336)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEcCCCCcccCCC--ccccC--CCHHHHHHHHHHHHHcCCcEEeeecCCCHHHHHHHHHH
Confidence 9886665554 4455789999999998 45433 23222 46899999999999999999999999999999999999
Q ss_pred hhCCCC
Q 025860 237 LSNRSS 242 (247)
Q Consensus 237 l~~~~~ 242 (247)
+++..|
T Consensus 293 l~~~~~ 298 (336)
T PRK07534 293 LDARPR 298 (336)
T ss_pred HccCCC
Confidence 986443
No 6
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=100.00 E-value=3.2e-54 Score=388.05 Aligned_cols=216 Identities=40% Similarity=0.772 Sum_probs=160.8
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 025860 1 MLRRSVEIAREARDMYFERCSKSSCDSVTDDRIPKHRPILVAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQ 80 (247)
Q Consensus 1 l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~g~eY~g~y~~~~s~~e~~~~~~~q~~ 80 (247)
++++||+|||+|+++|. ++++++|+|||||+|+++. |+||+++|.. ++++++++|++|++
T Consensus 83 l~~~av~lA~~a~~~~~-----------------~~~~~~VaGsiGP~ga~l~-g~~y~~~~~~--~~~~~~~~~~~q~~ 142 (305)
T PF02574_consen 83 LNRAAVELAREAADEYG-----------------SGRKVLVAGSIGPYGAYLS-GSEYPGDYGL--SFEELRDFHREQAE 142 (305)
T ss_dssp HHHHHHHHHHHHHTT--------------------TT-SEEEEEEE--S---------CTTCTT---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcc-----------------CCCccEEEEEcccccccch-hhhccccccc--cHHHHHHHHHHHHH
Confidence 58999999999999874 2346999999999999999 9999999974 99999999999999
Q ss_pred HHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhC-----CCCeEEEEcC
Q 025860 81 VLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESC-----KRVVSVGINC 155 (247)
Q Consensus 81 ~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~-----~~~~avG~NC 155 (247)
.|.++|||+|+|||||++.|++++++++++.. ++|+|+||++.+++++++|+++.+++..+.+. .++++||+||
T Consensus 143 ~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~-~~p~~is~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~iGvNC 221 (305)
T PF02574_consen 143 ALADAGVDLLLFETMPSLAEAKAALEAIKEVT-GLPVWISFSCKDSGRLRDGTSLEDAVQVIDELLRALPPGPDAIGVNC 221 (305)
T ss_dssp HHHHTT-SEEEEEEEC-CSCHHHHHHHHHHHH-HCCSSEEE-EEEEES-TCTTBCTTSHHHHHHHHHHHCTT-SEEEEES
T ss_pred HHHhcCCCEEEEecCcHHHHHHHHHHHHHhhh-hhhceeccchhhhccccCCCCHHHHHHHHHHHHHHhhhhhheEEcCC
Confidence 99999999999999999999999999999943 68999999999999999999999998888764 5899999999
Q ss_pred CChhHHHHHHHHHHhh-cCCCEEEEeCCCCcccccccccccCC-CCChHHHHHHHHHHHHcCCeEEeecCCCChHHHHHH
Q 025860 156 TPPRFISGLILIIKKV-TAKPILIYPNSGEFYDADRKEWVQNT-GVSDEDFVSYVSKWCEVGASLVGGCCRTTPNTIKGI 233 (247)
Q Consensus 156 ~~p~~~~~~l~~l~~~-~~~pl~vyPNaG~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~G~~iIGGCCGt~P~hI~al 233 (247)
++|......|..+... .+.||++|||+|.+++.. ..|.... .+.++ |.+++++|++.|++||||||||||+||++|
T Consensus 222 ~~~~~~~~~l~~~~~~~~~~~l~vyPNsG~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~G~~iiGGCCGt~P~hI~al 299 (305)
T PF02574_consen 222 TSPPEIMKALLELMSATHDIPLIVYPNSGEPYDVG-KVWSETPEDFAPE-WAEFVKEWVEAGARIIGGCCGTTPEHIRAL 299 (305)
T ss_dssp SS-HHHHHHHHHHHHHHT-SEEEEE--SBS-TTSS-GGSTTTTTSHGGG--HHHHHHHHHHHHCEE---TT--HHHHHHH
T ss_pred CCcHHHHhHHHHHHhccCCceEEEecCCCCCcccc-cccccchhhhHHH-HHHHHHHHHHhCCEEEEeCCCCCHHHHHHH
Confidence 9777666666555554 489999999999998876 6786432 22333 888999999999999999999999999999
Q ss_pred HHHhhC
Q 025860 234 YRTLSN 239 (247)
Q Consensus 234 ~~~l~~ 239 (247)
++.|++
T Consensus 300 ~~~l~~ 305 (305)
T PF02574_consen 300 AKALDK 305 (305)
T ss_dssp HHHTH-
T ss_pred HHHhcC
Confidence 999873
No 7
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-50 Score=351.53 Aligned_cols=212 Identities=26% Similarity=0.414 Sum_probs=185.2
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 025860 1 MLRRSVEIAREARDMYFERCSKSSCDSVTDDRIPKHRPILVAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQ 80 (247)
Q Consensus 1 l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~g~eY~g~y~~~~s~~e~~~~~~~q~~ 80 (247)
||++|++|||+|++++. ..+++||+|||||++..+.. ++++ .++++++++.|++|++
T Consensus 94 in~~aa~iAR~aA~~~~-----------------~~k~rfVaGsiGPt~k~~~~----~~~~--~v~fd~l~~ay~eq~~ 150 (311)
T COG0646 94 INQKAARIARRAADEAG-----------------DPKPRFVAGSIGPTNKTLSI----SPDF--AVTFDELVEAYREQVE 150 (311)
T ss_pred HHHHHHHHHHHHHhhcC-----------------CCCceEEEEeccCcCCcCCc----CCcc--cccHHHHHHHHHHHHH
Confidence 58999999999999872 12689999999999965432 2322 4899999999999999
Q ss_pred HHhcCCCCEEEEecCCCHHHHHHHHHHHHhh----CCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCC
Q 025860 81 VLVESAPDLIAFETIPNKIEAQAYAELLEEE----NIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT 156 (247)
Q Consensus 81 ~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~----~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~ 156 (247)
.|++.|||+|||||+.++.|+|+++.++++. +.++|+++|.|+.+.+++++|.+++++...+++ .++++||+||.
T Consensus 151 ~Li~gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~sG~tl~Gq~~~a~~~~l~~-~~~~~vGlNCa 229 (311)
T COG0646 151 GLIDGGADLILIETIFDTLNAKAAVFAAREVFEELGVRLPVMISGTITDSGRTLSGQTIEAFLNSLEH-LGPDAVGLNCA 229 (311)
T ss_pred HHHhCCCcEEEEehhccHHHHHHHHHHHHHHHHhcCCcccEEEEEEEecCceecCCCcHHHHHHHhhc-cCCcEEeeccc
Confidence 9999999999999999999999999988875 345999999999999999999999999999987 68999999997
Q ss_pred -ChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcC-CeEEeecCCCChHHHHHHH
Q 025860 157 -PPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVG-ASLVGGCCRTTPNTIKGIY 234 (247)
Q Consensus 157 -~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~iIGGCCGt~P~hI~al~ 234 (247)
+|+.|.+.|+.+....+.++.+|||+|.+.... .+..+ +.+|++|++++..|++.| ++||||||||||+||++|+
T Consensus 230 ~Gp~~m~~~l~~ls~~~~~~vs~~PNAGLP~~~g-~~~~Y--~~~p~~~a~~~~~f~~~g~vnIvGGCCGTTPeHIraia 306 (311)
T COG0646 230 LGPDEMRPHLRELSRIADAFVSVYPNAGLPNAFG-ERAVY--DLTPEYMAEALAEFAEEGGVNIVGGCCGTTPEHIRAIA 306 (311)
T ss_pred cCHHHHHHHHHHHHhccCceEEEeCCCCCCcccC-Ccccc--CCCHHHHHHHHHHHHHhCCceeeccccCCCHHHHHHHH
Confidence 999999999999999999999999999863322 11111 257999999999999988 9999999999999999999
Q ss_pred HHhhC
Q 025860 235 RTLSN 239 (247)
Q Consensus 235 ~~l~~ 239 (247)
+.+++
T Consensus 307 ~~v~~ 311 (311)
T COG0646 307 EAVKG 311 (311)
T ss_pred HHhcC
Confidence 98863
No 8
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=100.00 E-value=2.3e-49 Score=385.47 Aligned_cols=207 Identities=28% Similarity=0.418 Sum_probs=183.6
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 025860 1 MLRRSVEIAREARDMYFERCSKSSCDSVTDDRIPKHRPILVAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQ 80 (247)
Q Consensus 1 l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~g~eY~g~y~~~~s~~e~~~~~~~q~~ 80 (247)
|+++||+|||+|++ ++++|||||||+|+ | ++|++ ++.++++++|++|++
T Consensus 84 l~~~av~lAr~a~~----------------------~~~~VagsiGP~g~-------~-~~~~~-~~~~~~~~~~~~~~~ 132 (612)
T PRK08645 84 INRAAVRLAREAAG----------------------DDVYVAGTIGPIGG-------R-GPLGD-ISLEEIRREFREQID 132 (612)
T ss_pred HHHHHHHHHHHHhc----------------------CCCeEEEeCCCCCC-------C-CCCCC-CCHHHHHHHHHHHHH
Confidence 57899999999975 25899999999997 4 56765 789999999999999
Q ss_pred HHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCC-Chh
Q 025860 81 VLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT-PPR 159 (247)
Q Consensus 81 ~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~-~p~ 159 (247)
.|.++|||+|++||+|++.|++++++++++.+ ++|+|+||+++++++|++|+++++++..+.+ .++++||+||+ +|+
T Consensus 133 ~l~~~gvD~l~~ET~~~~~Ea~a~~~a~~~~~-~~p~~~Sf~~~~~g~l~~G~~~~~~~~~~~~-~~~~avGiNC~~~p~ 210 (612)
T PRK08645 133 ALLEEGVDGLLLETFYDLEELLLALEAAREKT-DLPIIAQVAFHEDGVTQNGTSLEEALKELVA-AGADVVGLNCGLGPY 210 (612)
T ss_pred HHHhcCCCEEEEEccCCHHHHHHHHHHHHHhC-CCcEEEEEEECCCCeeCCCCCHHHHHHHHHh-CCCCEEEecCCCCHH
Confidence 99999999999999999999999999999875 5999999999999999999999999999976 57999999999 599
Q ss_pred HHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEEeecCCCChHHHHHHHHHhhC
Q 025860 160 FISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCRTTPNTIKGIYRTLSN 239 (247)
Q Consensus 160 ~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iIGGCCGt~P~hI~al~~~l~~ 239 (247)
.+.++|+.+....+.|+++|||+|.+.......|.. .+|+.|++++++|++.|++||||||||||+||++|++.++.
T Consensus 211 ~~~~~l~~l~~~~~~pl~vypNaG~~~~~~~~~~~~---~~p~~~~~~~~~~~~~Ga~iiGGCCgt~P~hI~~la~~l~~ 287 (612)
T PRK08645 211 HMLEALERIPIPENAPLSAYPNAGLPEYVDGRYVYS---ANPEYFAEYALEFVEQGVRLIGGCCGTTPEHIRAMARALKG 287 (612)
T ss_pred HHHHHHHHHHhccCceEEEEECCCCCCCCCCccccC---CCHHHHHHHHHHHHHhCCCEEeEecCCCHHHHHHHHHHhcc
Confidence 999999999876789999999999853222222322 46899999999999999999999999999999999999987
Q ss_pred CCCC
Q 025860 240 RSSV 243 (247)
Q Consensus 240 ~~~~ 243 (247)
.+|+
T Consensus 288 ~~~~ 291 (612)
T PRK08645 288 LKPV 291 (612)
T ss_pred CCCc
Confidence 7664
No 9
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=100.00 E-value=3e-49 Score=402.68 Aligned_cols=220 Identities=23% Similarity=0.381 Sum_probs=194.4
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCeEEEEecCCcccC--cCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 025860 1 MLRRSVEIAREARDMYFERCSKSSCDSVTDDRIPKHRPILVAASVGSYGAY--LADGSEYSGNYGDAITVETLKDFHRRR 78 (247)
Q Consensus 1 l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~--l~~g~eY~g~y~~~~s~~e~~~~~~~q 78 (247)
|+++||+|||+|+++|.+++ .+++++|||||||+|.+ +.+++||.| |++ +++++++++|++|
T Consensus 106 ln~~av~LAreAa~~~~~~~--------------~~~~~~VAGSIGP~g~~~sl~p~~e~pg-~~~-it~del~~~y~eQ 169 (1229)
T PRK09490 106 LNFAAARLAREAADEWTAKT--------------PDKPRFVAGVLGPTNRTASISPDVNDPG-FRN-VTFDELVAAYREQ 169 (1229)
T ss_pred HHHHHHHHHHHHHHHhhhcc--------------CCCceEEEEecCCCCcccccCCCccccc-ccC-CCHHHHHHHHHHH
Confidence 57899999999999974322 24579999999999964 669999988 654 8999999999999
Q ss_pred HHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhh----CCCCcEEEEEEEcC-CCcccCCCcHHHHHHHHHhCCCCeEEEE
Q 025860 79 VQVLVESAPDLIAFETIPNKIEAQAYAELLEEE----NIKIPAWFSFNSKD-GVNVVSGDSLLECASIAESCKRVVSVGI 153 (247)
Q Consensus 79 ~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~----~~~~pv~is~~~~~-~~~l~~G~~~~~~~~~~~~~~~~~avG~ 153 (247)
++.|+++|||+|+|||++++.|+++++.++++. +.++|+|+|||+.+ +++|++|++++.++..+.+ .++++||+
T Consensus 170 i~~L~e~GVDllliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~T~~d~~Gr~lsG~~~ea~~~~l~~-~~~~avGl 248 (1229)
T PRK09490 170 TRGLIEGGADLILIETIFDTLNAKAAIFAVEEVFEELGVRLPVMISGTITDASGRTLSGQTTEAFWNSLRH-AKPLSIGL 248 (1229)
T ss_pred HHHHHhCCCCEEEEeeeCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCccCCCCcHHHHHHHHhc-CCCCEEEE
Confidence 999999999999999999999999999998864 44799999999965 7899999999999998876 68999999
Q ss_pred cCC-ChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcC-CeEEeecCCCChHHHH
Q 025860 154 NCT-PPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVG-ASLVGGCCRTTPNTIK 231 (247)
Q Consensus 154 NC~-~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~iIGGCCGt~P~hI~ 231 (247)
||+ +|+.|.++|+.+....+.|+++|||+|.+... ..|. .+|++|++++++|++.| ++||||||||||+||+
T Consensus 249 NCs~GP~~m~~~l~~l~~~~~~pi~vyPNAGlP~~~--~~yd----~tPe~~a~~~~~~~~~G~v~IIGGCCGTtPeHI~ 322 (1229)
T PRK09490 249 NCALGADELRPYVEELSRIADTYVSAHPNAGLPNAF--GEYD----ETPEEMAAQIGEFAESGFLNIVGGCCGTTPEHIA 322 (1229)
T ss_pred cCCCcHHHHHHHHHHHHHhcCCeEEEEeCCCCCCCC--CCCC----CCHHHHHHHHHHHHHcCCCCEEEecCCCCHHHHH
Confidence 999 89999999999998889999999999986432 2342 57999999999999999 9999999999999999
Q ss_pred HHHHHhhCCCCC
Q 025860 232 GIYRTLSNRSSV 243 (247)
Q Consensus 232 al~~~l~~~~~~ 243 (247)
+|++.+++.+|.
T Consensus 323 ala~~l~~~~p~ 334 (1229)
T PRK09490 323 AIAEAVAGLPPR 334 (1229)
T ss_pred HHHHHHhcCCCC
Confidence 999999876553
No 10
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=100.00 E-value=1.1e-47 Score=391.80 Aligned_cols=219 Identities=21% Similarity=0.325 Sum_probs=190.5
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCeEEEEecCCcccCc--CCCCCCCCCCCCCCCHHHHHHHHHHH
Q 025860 1 MLRRSVEIAREARDMYFERCSKSSCDSVTDDRIPKHRPILVAASVGSYGAYL--ADGSEYSGNYGDAITVETLKDFHRRR 78 (247)
Q Consensus 1 l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l--~~g~eY~g~y~~~~s~~e~~~~~~~q 78 (247)
|+++||+|||+|+++|.+ . .+++++|||||||+|.++ .++.+| +.|++ +++++++++|++|
T Consensus 91 ln~~av~lAr~Aa~~~~~-~--------------~~~~~~VAGsIGP~g~~~~lgp~~~~-~~~~~-~t~del~~~y~eq 153 (1178)
T TIGR02082 91 LNFKGAKLARAVADEFTL-T--------------PEKPRFVAGSMGPTNKTATLSPDVER-PGFRN-VTYDELVDAYTEQ 153 (1178)
T ss_pred HHHHHHHHHHHHHHhhcc-c--------------CCCceEEEEEeCCCCCCccCCCcccc-CccCC-CCHHHHHHHHHHH
Confidence 578999999999998732 1 245799999999999754 444555 44775 8999999999999
Q ss_pred HHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhh----CCCCcEEEEEE-EcCCCcccCCCcHHHHHHHHHhCCCCeEEEE
Q 025860 79 VQVLVESAPDLIAFETIPNKIEAQAYAELLEEE----NIKIPAWFSFN-SKDGVNVVSGDSLLECASIAESCKRVVSVGI 153 (247)
Q Consensus 79 ~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~----~~~~pv~is~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~ 153 (247)
++.|+++|||+|+|||++++.|+++++.++++. +.++|||+|++ ++++++|++|+++++++..+.. .++++||+
T Consensus 154 ~~~L~~~GvD~iliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~~~~d~~Gr~~~G~~~~~~~~~l~~-~~~~avGl 232 (1178)
T TIGR02082 154 AKGLLDGGVDLLLIETCFDTLNAKAALFAAETVFEEKGRELPIMISGTIVDTSGRTLSGQTIEAFLTSLEH-AGIDMIGL 232 (1178)
T ss_pred HHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCeeCCCCcHHHHHHHHhc-CCCCEEEe
Confidence 999999999999999999999999999999874 34799999955 5677999999999999998876 68999999
Q ss_pred cCC-ChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHc-CCeEEeecCCCChHHHH
Q 025860 154 NCT-PPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEV-GASLVGGCCRTTPNTIK 231 (247)
Q Consensus 154 NC~-~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~iIGGCCGt~P~hI~ 231 (247)
||+ +|+.|.++|+.+....+.|+++|||+|.++.. ..|. .+|++|++++++|++. |++||||||||||+||+
T Consensus 233 NCs~gP~~m~~~l~~l~~~~~~pi~vyPNAGlP~~~--~~yd----~~p~~~a~~~~~~~~~ggv~IIGGCCGTtPeHI~ 306 (1178)
T TIGR02082 233 NCALGPDEMRPHLKHLSEHAEAYVSCHPNAGLPNAF--GEYD----LTPDELAKALADFAAEGGLNIVGGCCGTTPDHIR 306 (1178)
T ss_pred CCCCCHHHHHHHHHHHHHhcCceEEEEeCCCCCCCC--Cccc----CCHHHHHHHHHHHHHhCCCcEEEecCCCCHHHHH
Confidence 999 89999999999999999999999999987553 2342 5799999999999987 69999999999999999
Q ss_pred HHHHHhhCCCCC
Q 025860 232 GIYRTLSNRSSV 243 (247)
Q Consensus 232 al~~~l~~~~~~ 243 (247)
+|++.+++.+|.
T Consensus 307 ala~~l~~~~p~ 318 (1178)
T TIGR02082 307 AIAEAVKNIKPR 318 (1178)
T ss_pred HHHHHhhcCCCC
Confidence 999999876553
No 11
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=97.61 E-value=0.0081 Score=53.85 Aligned_cols=160 Identities=16% Similarity=0.177 Sum_probs=103.1
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEecCCCHHH------------------HHHHHHHHHhhCCCCcEEEEEEEcCCCc
Q 025860 67 TVETLKDFHRRRVQVLVESAPDLIAFETIPNKIE------------------AQAYAELLEEENIKIPAWFSFNSKDGVN 128 (247)
Q Consensus 67 s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E------------------~~aa~~~~~~~~~~~pv~is~~~~~~~~ 128 (247)
.+|.+.+.|+.-+ ++|+|+|-=.|+..-.- ++.|.+++.+.+.++|.+|.=++-+.++
T Consensus 51 ~Pd~I~~IH~aY~----eAGADiIeTNTFgat~i~lady~led~v~~in~~aa~iAR~aA~~~~~~k~rfVaGsiGPt~k 126 (311)
T COG0646 51 KPDVIEAIHRAYI----EAGADIIETNTFGATTIKLADYGLEDKVYEINQKAARIARRAADEAGDPKPRFVAGSIGPTNK 126 (311)
T ss_pred CcHHHHHHHHHHH----hccCcEEEecCCCcchhhHhhhChHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEeccCcCC
Confidence 4688888888665 59999998888875321 2222333333321268888888766554
Q ss_pred c--cCC---CcHHHHHHHHHh------CCCCeEEEEcCC-ChhHHHHHHHHHHhhcC-----CCEEEEeCCCCccccccc
Q 025860 129 V--VSG---DSLLECASIAES------CKRVVSVGINCT-PPRFISGLILIIKKVTA-----KPILIYPNSGEFYDADRK 191 (247)
Q Consensus 129 l--~~G---~~~~~~~~~~~~------~~~~~avG~NC~-~p~~~~~~l~~l~~~~~-----~pl~vyPNaG~~~d~~~~ 191 (247)
+ .+| .++.++....++ ..|+|++.|--. +...+..++..+++..+ .|+++.--. .+. +
T Consensus 127 ~~~~~~~~~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti---~~s--G 201 (311)
T COG0646 127 TLSISPDFAVTFDELVEAYREQVEGLIDGGADLILIETIFDTLNAKAAVFAAREVFEELGVRLPVMISGTI---TDS--G 201 (311)
T ss_pred cCCcCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEehhccHHHHHHHHHHHHHHHHhcCCcccEEEEEEE---ecC--c
Confidence 2 234 567766555432 269999999986 78888888888777754 888764322 110 1
Q ss_pred ccccCCCCChHHHHHHHHHHHHcCCeEEeecCCCChHHHHHHHHHhhCC
Q 025860 192 EWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCRTTPNTIKGIYRTLSNR 240 (247)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~G~~iIGGCCGt~P~hI~al~~~l~~~ 240 (247)
+.+.. .+++.|.. .....|+.+||==|+++|++++..-+.+...
T Consensus 202 ~tl~G--q~~~a~~~---~l~~~~~~~vGlNCa~Gp~~m~~~l~~ls~~ 245 (311)
T COG0646 202 RTLSG--QTIEAFLN---SLEHLGPDAVGLNCALGPDEMRPHLRELSRI 245 (311)
T ss_pred eecCC--CcHHHHHH---HhhccCCcEEeeccccCHHHHHHHHHHHHhc
Confidence 11211 34554444 4666799999999999998887765565543
No 12
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=96.91 E-value=0.07 Score=56.55 Aligned_cols=156 Identities=18% Similarity=0.209 Sum_probs=100.9
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEecCCCH---------H----HH-HHHHHHHHhhC------CCCcEEEEEEEcCC
Q 025860 67 TVETLKDFHRRRVQVLVESAPDLIAFETIPNK---------I----EA-QAYAELLEEEN------IKIPAWFSFNSKDG 126 (247)
Q Consensus 67 s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~---------~----E~-~aa~~~~~~~~------~~~pv~is~~~~~~ 126 (247)
.++.+++.|+.-+ ++|+|+|.=-|+..- . |+ +.+++.+|+.. .+.|++|.-++-+.
T Consensus 48 ~Pe~I~~IH~~Yl----~AGAdII~TNTF~a~~~~L~~yg~~~~~~eln~~av~lAr~Aa~~~~~~~~~~~~VAGsIGP~ 123 (1178)
T TIGR02082 48 KPEVIATIHRAYF----EAGADIIETNTFNSTTISQADYDLEDLIYDLNFKGAKLARAVADEFTLTPEKPRFVAGSMGPT 123 (1178)
T ss_pred CHHHHHHHHHHHH----HHhchheecCCccCCHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCceEEEEEeCCC
Confidence 5688888888765 489998877777432 1 11 13344444321 13578898888776
Q ss_pred Cccc-CC----------CcHHHHHHH-------HHhCCCCeEEEEcCC-ChhHHHHHHHHHHhh-----cCCCEEEE---
Q 025860 127 VNVV-SG----------DSLLECASI-------AESCKRVVSVGINCT-PPRFISGLILIIKKV-----TAKPILIY--- 179 (247)
Q Consensus 127 ~~l~-~G----------~~~~~~~~~-------~~~~~~~~avG~NC~-~p~~~~~~l~~l~~~-----~~~pl~vy--- 179 (247)
+.+. .| .+++++.+. +.+ .++|.|.+.-. +...+..++..+++. .+.|+++.
T Consensus 124 g~~~~lgp~~~~~~~~~~t~del~~~y~eq~~~L~~-~GvD~iliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~~~ 202 (1178)
T TIGR02082 124 NKTATLSPDVERPGFRNVTYDELVDAYTEQAKGLLD-GGVDLLLIETCFDTLNAKAALFAAETVFEEKGRELPIMISGTI 202 (1178)
T ss_pred CCCccCCCccccCccCCCCHHHHHHHHHHHHHHHHh-CCCCEEEEeccCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEE
Confidence 6532 22 466665444 333 68999999975 777777777776653 46898776
Q ss_pred eC-CCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEEeecCCCChHHHHHHHHHhhCC
Q 025860 180 PN-SGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCRTTPNTIKGIYRTLSNR 240 (247)
Q Consensus 180 PN-aG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iIGGCCGt~P~hI~al~~~l~~~ 240 (247)
.+ .|.. .. ..+++.+...+ ...|+..||=-|+++|+++..+-+.+...
T Consensus 203 ~d~~Gr~--------~~--G~~~~~~~~~l---~~~~~~avGlNCs~gP~~m~~~l~~l~~~ 251 (1178)
T TIGR02082 203 VDTSGRT--------LS--GQTIEAFLTSL---EHAGIDMIGLNCALGPDEMRPHLKHLSEH 251 (1178)
T ss_pred ECCCCee--------CC--CCcHHHHHHHH---hcCCCCEEEeCCCCCHHHHHHHHHHHHHh
Confidence 22 2221 11 13455565554 35799999999999999999887777543
No 13
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=96.89 E-value=0.12 Score=42.47 Aligned_cols=137 Identities=9% Similarity=0.074 Sum_probs=81.6
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHh-hCC-CCcEEEEEEEcCCCcccCCCcHHHH---HHHHHhCCCCe
Q 025860 75 HRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEE-ENI-KIPAWFSFNSKDGVNVVSGDSLLEC---ASIAESCKRVV 149 (247)
Q Consensus 75 ~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~-~~~-~~pv~is~~~~~~~~l~~G~~~~~~---~~~~~~~~~~~ 149 (247)
.+++++.+++.|+|.|.+-- ..++.+++ ... +.|+++.+...... ....+. ++.+.+ .|++
T Consensus 15 ~~~~~~~~~~~gv~gi~~~g--------~~i~~~~~~~~~~~~~v~~~v~~~~~~-----~~~~~~~~~a~~a~~-~Gad 80 (201)
T cd00945 15 IAKLCDEAIEYGFAAVCVNP--------GYVRLAADALAGSDVPVIVVVGFPTGL-----TTTEVKVAEVEEAID-LGAD 80 (201)
T ss_pred HHHHHHHHHHhCCcEEEECH--------HHHHHHHHHhCCCCCeEEEEecCCCCC-----CcHHHHHHHHHHHHH-cCCC
Confidence 44477778889999986543 22333322 222 47888777542211 113333 333444 5889
Q ss_pred EEEEcCCC-------hhHHHHHHHHHHhh--cCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEEe
Q 025860 150 SVGINCTP-------PRFISGLILIIKKV--TAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVG 220 (247)
Q Consensus 150 avG~NC~~-------p~~~~~~l~~l~~~--~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iIG 220 (247)
++.+-+.. .+.+...++.+.+. .+.|+++|.+.+.. .+++...+.++...+.|+..|=
T Consensus 81 ~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~-------------~~~~~~~~~~~~~~~~g~~~iK 147 (201)
T cd00945 81 EIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGL-------------KTADEIAKAARIAAEAGADFIK 147 (201)
T ss_pred EEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC-------------CCHHHHHHHHHHHHHhCCCEEE
Confidence 88886641 34555666666666 47999999876431 1355566665556667877775
Q ss_pred ecCC-----CChHHHHHHHHHhh
Q 025860 221 GCCR-----TTPNTIKGIYRTLS 238 (247)
Q Consensus 221 GCCG-----t~P~hI~al~~~l~ 238 (247)
=..| .+.++++.+++.+.
T Consensus 148 ~~~~~~~~~~~~~~~~~i~~~~~ 170 (201)
T cd00945 148 TSTGFGGGGATVEDVKLMKEAVG 170 (201)
T ss_pred eCCCCCCCCCCHHHHHHHHHhcc
Confidence 5444 36778887776653
No 14
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=96.69 E-value=0.4 Score=43.22 Aligned_cols=119 Identities=11% Similarity=0.105 Sum_probs=76.2
Q ss_pred eEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEe-c-----CCCHHHHHHHHHHHHh-h
Q 025860 39 ILVAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFE-T-----IPNKIEAQAYAELLEE-E 111 (247)
Q Consensus 39 ~~VaGsiGP~g~~l~~g~eY~g~y~~~~s~~e~~~~~~~q~~~l~~~gvD~i~~E-T-----~~~~~E~~aa~~~~~~-~ 111 (247)
-.+..-+-|+.. + ..++.+.++. +++.+++.|||.|++= | .-+.+|=+.+++.+.+ .
T Consensus 10 Gv~~a~vTPf~~----------d--g~iD~~~l~~----li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~ 73 (303)
T PRK03620 10 GLLSFPVTPFDA----------D--GSFDEAAYRE----HLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETT 73 (303)
T ss_pred ceEEeeeCCCCC----------C--CCcCHHHHHH----HHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHh
Confidence 356666777742 2 1266666544 8888888999998652 2 2346677777775544 4
Q ss_pred CCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHh--CCCCeEEEEcCC-----ChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 025860 112 NIKIPAWFSFNSKDGVNVVSGDSLLECASIAES--CKRVVSVGINCT-----PPRFISGLILIIKKVTAKPILIYPNSG 183 (247)
Q Consensus 112 ~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~--~~~~~avG~NC~-----~p~~~~~~l~~l~~~~~~pl~vyPNaG 183 (247)
..++|+++.+. + +..++++.++. ..|++++-+--- +.+.+....+.+.+.++.|+++|=+.|
T Consensus 74 ~~~~pvi~gv~---------~-~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~~g 142 (303)
T PRK03620 74 AGRVPVIAGAG---------G-GTAQAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNRDN 142 (303)
T ss_pred CCCCcEEEecC---------C-CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 44689998772 2 44555554432 258888776431 235667777777777899999996544
No 15
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=96.60 E-value=0.09 Score=46.75 Aligned_cols=85 Identities=20% Similarity=0.195 Sum_probs=59.5
Q ss_pred CCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCCCh------------hHHHHHHHHHHhhcCCCEEEEeC
Q 025860 114 KIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTPP------------RFISGLILIIKKVTAKPILIYPN 181 (247)
Q Consensus 114 ~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~~p------------~~~~~~l~~l~~~~~~pl~vyPN 181 (247)
+.|+++|+... +-+.+.++++.+.+ .++++|-+||++| +.+.++++.+++..+.|+++.-+
T Consensus 98 ~~pvi~si~g~------~~~~~~~~a~~~~~-~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~ 170 (289)
T cd02810 98 GQPLIASVGGS------SKEDYVELARKIER-AGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLS 170 (289)
T ss_pred CCeEEEEeccC------CHHHHHHHHHHHHH-hCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeC
Confidence 68999998532 11344556666665 4899999998754 45677888888877899988876
Q ss_pred CCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEEe
Q 025860 182 SGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVG 220 (247)
Q Consensus 182 aG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iIG 220 (247)
.+. +++++.+.++...+.|+..|-
T Consensus 171 ~~~---------------~~~~~~~~a~~l~~~Gad~i~ 194 (289)
T cd02810 171 PYF---------------DLEDIVELAKAAERAGADGLT 194 (289)
T ss_pred CCC---------------CHHHHHHHHHHHHHcCCCEEE
Confidence 431 245677777777788877654
No 16
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=96.59 E-value=0.53 Score=42.53 Aligned_cols=157 Identities=13% Similarity=0.086 Sum_probs=94.7
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEecCCC-----------HHHHH----HHHHHHHhhCC---CCcEEEEEEEcCCCc
Q 025860 67 TVETLKDFHRRRVQVLVESAPDLIAFETIPN-----------KIEAQ----AYAELLEEENI---KIPAWFSFNSKDGVN 128 (247)
Q Consensus 67 s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~-----------~~E~~----aa~~~~~~~~~---~~pv~is~~~~~~~~ 128 (247)
.++-+++.|++-+ ++|+|+|.--|+.. .++++ .+++.+++... ..|++|.-++-+-+.
T Consensus 44 ~Pe~V~~vH~~yl----~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~VaGsiGP~g~ 119 (304)
T PRK09485 44 NPELIYQVHLDYF----RAGADCAITASYQATFQGFAARGLSEAEAEELIRRSVELAKEARDEFWAEKPLVAGSVGPYGA 119 (304)
T ss_pred ChHHHHHHHHHHH----HhCCCEEEeeccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEecCCccc
Confidence 4566788888776 47999988788742 12322 23344444310 126777777755443
Q ss_pred c-cC--------CCcHHHHHHH-------HHhCCCCeEEEEcCC-ChhHHHHHHHHHHhh-cCCCEEEEeCCCCcccccc
Q 025860 129 V-VS--------GDSLLECASI-------AESCKRVVSVGINCT-PPRFISGLILIIKKV-TAKPILIYPNSGEFYDADR 190 (247)
Q Consensus 129 l-~~--------G~~~~~~~~~-------~~~~~~~~avG~NC~-~p~~~~~~l~~l~~~-~~~pl~vyPNaG~~~d~~~ 190 (247)
. .+ +.+.+++.+. +.+ .++|.|.+.-. +.+.+..+++.+++. .+.|+++.-..- +.
T Consensus 120 ~l~~~~~y~g~~~~~~~~~~~~~~~q~~~l~~-~gvD~i~~ET~~~~~E~~~~~~~~~~~~~~~pv~is~~~~---~~-- 193 (304)
T PRK09485 120 YLADGSEYRGDYGLSEEELQDFHRPRIEALAE-AGADLLACETIPNLDEAEALVELLKEEFPGVPAWLSFTLR---DG-- 193 (304)
T ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhh-CCCCEEEEeccCCHHHHHHHHHHHHHhcCCCcEEEEEEeC---CC--
Confidence 2 21 2456665443 333 58999999985 788888888888744 378876544321 11
Q ss_pred cccccCCCCChHHHHHHHHHHHHc-CCeEEeecCCCChHHHHHHHHHhhC
Q 025860 191 KEWVQNTGVSDEDFVSYVSKWCEV-GASLVGGCCRTTPNTIKGIYRTLSN 239 (247)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~-G~~iIGGCCGt~P~hI~al~~~l~~ 239 (247)
..... ..+.++..+.+. +. ++..||==|. +|+|+..+-+.+..
T Consensus 194 g~l~~--G~~~~~~~~~l~---~~~~~~~iGiNC~-~p~~~~~~l~~~~~ 237 (304)
T PRK09485 194 THISD--GTPLAEAAALLA---ASPQVVAVGVNCT-APELVTAAIAALRA 237 (304)
T ss_pred CcCCC--CCCHHHHHHHHh---cCCCceEEEecCC-CHHHHHHHHHHHHh
Confidence 11111 134555555543 34 4789999997 99999988777643
No 17
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=96.29 E-value=0.25 Score=45.06 Aligned_cols=102 Identities=14% Similarity=0.183 Sum_probs=59.8
Q ss_pred HHHHhcCCCCEEEEecCCCH-H------------H--------------HHHHHHHHHhhC-CCCcEEEEEEEcCCCccc
Q 025860 79 VQVLVESAPDLIAFETIPNK-I------------E--------------AQAYAELLEEEN-IKIPAWFSFNSKDGVNVV 130 (247)
Q Consensus 79 ~~~l~~~gvD~i~~ET~~~~-~------------E--------------~~aa~~~~~~~~-~~~pv~is~~~~~~~~l~ 130 (247)
++.+.+.|+.++..=|++.- . | +...++-+++.. .+.|+++|+...+...+.
T Consensus 65 ~~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~~~l~~~~~~~~plivsi~g~~~~~~~ 144 (327)
T cd04738 65 IDALLALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKKRRPRGGPLGVNIGKNKDTPLE 144 (327)
T ss_pred HHHHHHCCCcEEEEeccCCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHHHHHHHhccCCCeEEEEEeCCCCCccc
Confidence 33444678888877777642 0 1 222334344322 268999999654422211
Q ss_pred CC-CcHHHHHHHHHhCCCCeEEEEcCCCh-----------hHHHHHHHHHHhhcC-----CCEEEEeCC
Q 025860 131 SG-DSLLECASIAESCKRVVSVGINCTPP-----------RFISGLILIIKKVTA-----KPILIYPNS 182 (247)
Q Consensus 131 ~G-~~~~~~~~~~~~~~~~~avG~NC~~p-----------~~~~~~l~~l~~~~~-----~pl~vyPNa 182 (247)
.+ +.+.++++.+.. .+++|-+|+++| +.+.++++.+++..+ .|+++.-..
T Consensus 145 ~~~~d~~~~~~~~~~--~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~ 211 (327)
T cd04738 145 DAVEDYVIGVRKLGP--YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAP 211 (327)
T ss_pred ccHHHHHHHHHHHHh--hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCC
Confidence 11 223334444432 489999999755 567788888887764 898887743
No 18
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=96.22 E-value=0.47 Score=50.55 Aligned_cols=159 Identities=17% Similarity=0.164 Sum_probs=98.4
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEecCCCH---------HH-H----HHHHHHHHhhC-------CCCcEEEEEEEcC
Q 025860 67 TVETLKDFHRRRVQVLVESAPDLIAFETIPNK---------IE-A----QAYAELLEEEN-------IKIPAWFSFNSKD 125 (247)
Q Consensus 67 s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~---------~E-~----~aa~~~~~~~~-------~~~pv~is~~~~~ 125 (247)
.++.+++.|+.-+ ++|+|+|.--|+..- .+ + +.+++.+|+.. ++.|++|.-++-+
T Consensus 63 ~Pe~I~~IH~~Yl----~AGADII~TNTF~a~~~~L~~ygl~~~~~eln~~av~LAreAa~~~~~~~~~~~~~VAGSIGP 138 (1229)
T PRK09490 63 QPDVIEAIHRAYL----EAGADIIETNTFNATTIAQADYGMESLVYELNFAAARLAREAADEWTAKTPDKPRFVAGVLGP 138 (1229)
T ss_pred CHHHHHHHHHHHH----HHhCceeecCCCCCCHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCceEEEEecCC
Confidence 4678888888665 589998877777432 11 1 12333344321 1368888888877
Q ss_pred CCcccC-----------CCcHHHHHHH-------HHhCCCCeEEEEcCC-ChhHHHHHHHHHHhh-----cCCCEEEEeC
Q 025860 126 GVNVVS-----------GDSLLECASI-------AESCKRVVSVGINCT-PPRFISGLILIIKKV-----TAKPILIYPN 181 (247)
Q Consensus 126 ~~~l~~-----------G~~~~~~~~~-------~~~~~~~~avG~NC~-~p~~~~~~l~~l~~~-----~~~pl~vyPN 181 (247)
.+.+.+ +.+++++... +.+ .++|.|.+--. +...+..++..++.. .+.|+++.-.
T Consensus 139 ~g~~~sl~p~~e~pg~~~it~del~~~y~eQi~~L~e-~GVDllliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~T 217 (1229)
T PRK09490 139 TNRTASISPDVNDPGFRNVTFDELVAAYREQTRGLIE-GGADLILIETIFDTLNAKAAIFAVEEVFEELGVRLPVMISGT 217 (1229)
T ss_pred CCcccccCCCcccccccCCCHHHHHHHHHHHHHHHHh-CCCCEEEEeeeCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEE
Confidence 665322 2456665443 333 68999999875 777777777666554 4688765432
Q ss_pred CCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEEeecCCCChHHHHHHHHHhhC
Q 025860 182 SGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCRTTPNTIKGIYRTLSN 239 (247)
Q Consensus 182 aG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iIGGCCGt~P~hI~al~~~l~~ 239 (247)
. .|.. ++... ..+.+.+...+ ...|+..||==|+++|+++..+-+.+..
T Consensus 218 ~---~d~~-Gr~ls--G~~~ea~~~~l---~~~~~~avGlNCs~GP~~m~~~l~~l~~ 266 (1229)
T PRK09490 218 I---TDAS-GRTLS--GQTTEAFWNSL---RHAKPLSIGLNCALGADELRPYVEELSR 266 (1229)
T ss_pred E---ECCC-CccCC--CCcHHHHHHHH---hcCCCCEEEEcCCCcHHHHHHHHHHHHH
Confidence 1 1110 01111 13455454443 4679999999999999999988777653
No 19
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=96.19 E-value=0.14 Score=45.82 Aligned_cols=83 Identities=18% Similarity=0.177 Sum_probs=53.5
Q ss_pred CCcEEEEEEEcCCCcccCCCcHHHHHHHHHhC-CCCeEEEEcCCCh-------------hHHHHHHHHHHhhcCCCEEEE
Q 025860 114 KIPAWFSFNSKDGVNVVSGDSLLECASIAESC-KRVVSVGINCTPP-------------RFISGLILIIKKVTAKPILIY 179 (247)
Q Consensus 114 ~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~-~~~~avG~NC~~p-------------~~~~~~l~~l~~~~~~pl~vy 179 (247)
+.|+++|+.-.+ -+.+.++++.+.+. .++++|=+||++| +.+.++++.+++..+.|+++.
T Consensus 90 ~~pl~~qi~g~~------~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vK 163 (300)
T TIGR01037 90 PTPLIASVYGSS------VEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAK 163 (300)
T ss_pred CCcEEEEeecCC------HHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 469999984211 12344556655542 2489999999754 567778888888778898887
Q ss_pred eCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEE
Q 025860 180 PNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLV 219 (247)
Q Consensus 180 PNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iI 219 (247)
-+.. .+++.+.++.+.+.|+..|
T Consensus 164 i~~~-----------------~~~~~~~a~~l~~~G~d~i 186 (300)
T TIGR01037 164 LSPN-----------------VTDITEIAKAAEEAGADGL 186 (300)
T ss_pred CCCC-----------------hhhHHHHHHHHHHcCCCEE
Confidence 6421 1234556666667776665
No 20
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=95.97 E-value=0.48 Score=42.19 Aligned_cols=99 Identities=12% Similarity=0.035 Sum_probs=65.3
Q ss_pred HHHHHhcCCCCEEEEe-cCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCC
Q 025860 78 RVQVLVESAPDLIAFE-TIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT 156 (247)
Q Consensus 78 q~~~l~~~gvD~i~~E-T~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~ 156 (247)
-++...+.|+|.|-+- ..++++.++.+++.+|+.+ +.+.+.+.+.+.++. +-+-+.+.++.+.+ .+++.|.+-=+
T Consensus 96 di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G--~~v~~~i~~~~~~~~-~~~~~~~~~~~~~~-~Ga~~i~l~DT 171 (275)
T cd07937 96 FVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAG--KHVEGAICYTGSPVH-TLEYYVKLAKELED-MGADSICIKDM 171 (275)
T ss_pred HHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCC--CeEEEEEEecCCCCC-CHHHHHHHHHHHHH-cCCCEEEEcCC
Confidence 4445667899987553 4567788888889888875 444444433232221 23344556666666 57887776543
Q ss_pred ----ChhHHHHHHHHHHhhcCCCEEEEe
Q 025860 157 ----PPRFISGLILIIKKVTAKPILIYP 180 (247)
Q Consensus 157 ----~p~~~~~~l~~l~~~~~~pl~vyP 180 (247)
.|+.+..+++.+++..+.||.+..
T Consensus 172 ~G~~~P~~v~~lv~~l~~~~~~~l~~H~ 199 (275)
T cd07937 172 AGLLTPYAAYELVKALKKEVGLPIHLHT 199 (275)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 399999999999987777776554
No 21
>PRK07534 methionine synthase I; Validated
Probab=95.94 E-value=1.1 Score=41.18 Aligned_cols=158 Identities=13% Similarity=0.089 Sum_probs=93.6
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEecCCCH----------HHHH----HHHHHHHhhC--CCCcEEEEEEEcCCCc-c
Q 025860 67 TVETLKDFHRRRVQVLVESAPDLIAFETIPNK----------IEAQ----AYAELLEEEN--IKIPAWFSFNSKDGVN-V 129 (247)
Q Consensus 67 s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~----------~E~~----aa~~~~~~~~--~~~pv~is~~~~~~~~-l 129 (247)
.++.+++.|++-+ ++|+|+|.--|+..- +++. .+++.+++.- ...+++|.-++-+-+. +
T Consensus 43 ~Pe~V~~vH~~Yl----~AGAdiI~TnTy~as~~~l~~~~~~~~~~~l~~~av~lAr~a~~~~~~~~~VaGsIGP~g~~l 118 (336)
T PRK07534 43 HPDNITALHQGFV----DAGSDIILTNSFGGTAARLKLHDAQDRVHELNRAAAEIAREVADKAGRKVIVAGSVGPTGEIM 118 (336)
T ss_pred CHHHHHHHHHHHH----HhcCCEEEecCcccCHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecCCCcccc
Confidence 4577888888665 589999998887322 1121 2344444431 1246777777755433 3
Q ss_pred cC-C-CcHHHHH-------HHHHhCCCCeEEEEcCC-ChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCC
Q 025860 130 VS-G-DSLLECA-------SIAESCKRVVSVGINCT-PPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGV 199 (247)
Q Consensus 130 ~~-G-~~~~~~~-------~~~~~~~~~~avG~NC~-~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~ 199 (247)
.+ | .+.+++. +.+.+ .++|.|.+--. +...+..+++.++.. +.|+++.-..- +.. . . ....
T Consensus 119 ~~~~~~~~~e~~~~~~~qi~~l~~-~gvD~l~~ET~p~l~E~~a~~~~~~~~-~~Pv~vSft~~---~~g--~-l-~~G~ 189 (336)
T PRK07534 119 EPMGALTHALAVEAFHEQAEGLKA-GGADVLWVETISAPEEIRAAAEAAKLA-GMPWCGTMSFD---TAG--R-T-MMGL 189 (336)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHh-CCCCEEEEeccCCHHHHHHHHHHHHHc-CCeEEEEEEEC---CCC--e-e-CCCC
Confidence 22 2 2444433 33334 58999999875 677777888877654 78876654321 110 0 1 1113
Q ss_pred ChHHHHHHHHHHHHcCCeEEeecCCCChHHH-HHHHHHhh
Q 025860 200 SDEDFVSYVSKWCEVGASLVGGCCRTTPNTI-KGIYRTLS 238 (247)
Q Consensus 200 ~~~~~~~~~~~~~~~G~~iIGGCCGt~P~hI-~al~~~l~ 238 (247)
+.++..+.+... ..++..||==|+.+|+|+ +.+.+.+.
T Consensus 190 ~~~~~~~~~~~~-~~~~~avGvNC~~gp~~~~~~l~~~~~ 228 (336)
T PRK07534 190 TPADLADLVEKL-GEPPLAFGANCGVGASDLLRTVLGFTA 228 (336)
T ss_pred cHHHHHHHHHhc-CCCceEEEecCCCCHHHHHHHHHHHHH
Confidence 455566655431 224589999999999998 66665543
No 22
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=95.87 E-value=0.91 Score=41.32 Aligned_cols=173 Identities=17% Similarity=0.177 Sum_probs=103.3
Q ss_pred CeEEEEe--cCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCC
Q 025860 38 PILVAAS--VGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKI 115 (247)
Q Consensus 38 ~~~VaGs--iGP~g~~l~~g~eY~g~y~~~~s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~ 115 (247)
+..|..+ +.||-..-++|--- +-...+.-++-.+...+|+-.+.++|+|++.==-|.+- .+.++.+++.+.+..-
T Consensus 112 dl~vi~Dvclc~YT~hGHcGil~--~~~g~idND~Tl~~Lak~Al~~A~AGADiVAPSdMMDG-rV~aIR~aLd~~g~~~ 188 (324)
T PF00490_consen 112 DLLVITDVCLCEYTSHGHCGILD--DEDGEIDNDETLERLAKQALSHAEAGADIVAPSDMMDG-RVGAIREALDEAGFSD 188 (324)
T ss_dssp TSEEEEEE-STTTBTSSSSSEB---CTTSSBEHHHHHHHHHHHHHHHHHHT-SEEEE-S--TT-HHHHHHHHHHHTTCTT
T ss_pred CcEEEEecccccccCCCceEEEE--CCCCeEecHHHHHHHHHHHHHHHHhCCCeeccccccCC-HHHHHHHHHHhCCCCC
Confidence 4666665 45665554444210 00122667777888888999999999999985555443 3566777777765333
Q ss_pred cEEEEEEEcC-------------------C--CcccCCCcHHHHHHHHH--hCCCCeEEEEcCCChhHHHHHHHHHHhhc
Q 025860 116 PAWFSFNSKD-------------------G--VNVVSGDSLLECASIAE--SCKRVVSVGINCTPPRFISGLILIIKKVT 172 (247)
Q Consensus 116 pv~is~~~~~-------------------~--~~l~~G~~~~~~~~~~~--~~~~~~avG~NC~~p~~~~~~l~~l~~~~ 172 (247)
--++|.+.+- + ....+-....++++.+. -..|+|.|-|-=.-|. +.++..+++..
T Consensus 189 v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDrktYQmdp~N~~EAlre~~~D~~EGAD~lMVKPal~Y--LDIi~~~k~~~ 266 (324)
T PF00490_consen 189 VPIMSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREAELDIEEGADILMVKPALPY--LDIIRRVKERF 266 (324)
T ss_dssp SEEEEEEEEB-SSTGHHHHHHHT-HHSSSTSTTTSB-TT-HHHHHHHHHHHHHTT-SEEEEESSGGG--HHHHHHHHHHC
T ss_pred ccEEechHHHhhhhhHhHHHHhcCCccccCcccccCCCccHHHHHHHhhhhHhhCCCEEEeecchhH--HHHHHHHHHhc
Confidence 3445777541 1 11223334445555442 1358999998766443 67888888889
Q ss_pred CCCEEEEeCCCC---cccccccccccCCCCChHHHHHHHHHHHHcCCeEE
Q 025860 173 AKPILIYPNSGE---FYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLV 219 (247)
Q Consensus 173 ~~pl~vyPNaG~---~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iI 219 (247)
+.|+.+|--+|+ ........|... ...+.+....++.+|+.+|
T Consensus 267 ~~P~~aYqVSGEYaMikaAa~~G~~d~----~~~~~Esl~~~kRAGAd~I 312 (324)
T PF00490_consen 267 DLPVAAYQVSGEYAMIKAAAQNGWIDE----KRVVLESLLSIKRAGADII 312 (324)
T ss_dssp TS-EEEEETHHHHHHHHHHHHTTSS-H----HHHHHHHHHHHHHHT-SEE
T ss_pred CCCEEEEEehHHHHHHHHHHHCCCcch----hhHHHHHHHHHHHcCCCEE
Confidence 999999999996 122223457532 2346677788889999887
No 23
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=95.86 E-value=1 Score=40.15 Aligned_cols=137 Identities=18% Similarity=0.209 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhcCCCCEEEEe------------cCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHH
Q 025860 73 DFHRRRVQVLVESAPDLIAFE------------TIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECAS 140 (247)
Q Consensus 73 ~~~~~q~~~l~~~gvD~i~~E------------T~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~ 140 (247)
+.|...++.+.++|+|.|=+- -..+.+.+..+++.+++.. +.|+++-++.. -+.+.+.++
T Consensus 102 ~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~-~~Pv~vKl~~~-------~~~~~~~a~ 173 (296)
T cd04740 102 EEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT-DVPVIVKLTPN-------VTDIVEIAR 173 (296)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc-CCCEEEEeCCC-------chhHHHHHH
Confidence 345667777788899998552 2355677778888888764 68999887531 124566777
Q ss_pred HHHhCCCCeEE-EEcCCC-h------------------------hHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccc
Q 025860 141 IAESCKRVVSV-GINCTP-P------------------------RFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWV 194 (247)
Q Consensus 141 ~~~~~~~~~av-G~NC~~-p------------------------~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~ 194 (247)
.+.+ .++++| -+|+.. . ......+..+++..+.||+ .|+|.
T Consensus 174 ~~~~-~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii--~~GGI---------- 240 (296)
T cd04740 174 AAEE-AGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPII--GVGGI---------- 240 (296)
T ss_pred HHHH-cCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEE--EECCC----------
Confidence 6766 578865 346531 1 0123556666666666654 34432
Q ss_pred cCCCCChHHHHHHHHHHHHcCCeEEeecCC--CChHHHHHHHHHhh
Q 025860 195 QNTGVSDEDFVSYVSKWCEVGASLVGGCCR--TTPNTIKGIYRTLS 238 (247)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~G~~iIGGCCG--t~P~hI~al~~~l~ 238 (247)
.++++ +.++++.|+..|+-|-+ .+|..++.|.+-+.
T Consensus 241 ----~~~~d----a~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~ 278 (296)
T cd04740 241 ----ASGED----ALEFLMAGASAVQVGTANFVDPEAFKEIIEGLE 278 (296)
T ss_pred ----CCHHH----HHHHHHcCCCEEEEchhhhcChHHHHHHHHHHH
Confidence 13433 34456789988886655 37988888877664
No 24
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=95.78 E-value=0.27 Score=44.21 Aligned_cols=62 Identities=11% Similarity=0.153 Sum_probs=43.4
Q ss_pred CCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCCCh----------------hHHHHHHHHHHhhcCCCEE
Q 025860 114 KIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTPP----------------RFISGLILIIKKVTAKPIL 177 (247)
Q Consensus 114 ~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~~p----------------~~~~~~l~~l~~~~~~pl~ 177 (247)
+.|+++|+.... +-+.+.++++.+.+ .++++|-+||++| +.+.++++.+++..++|++
T Consensus 99 ~~p~i~si~G~~-----~~~~~~~~a~~~~~-~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~ 172 (299)
T cd02940 99 DKILIASIMCEY-----NKEDWTELAKLVEE-AGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVI 172 (299)
T ss_pred CCeEEEEecCCC-----CHHHHHHHHHHHHh-cCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeE
Confidence 579999986431 11355566666655 4799999999754 3567778888877789988
Q ss_pred EEeC
Q 025860 178 IYPN 181 (247)
Q Consensus 178 vyPN 181 (247)
|.-.
T Consensus 173 vKl~ 176 (299)
T cd02940 173 AKLT 176 (299)
T ss_pred EECC
Confidence 7743
No 25
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=95.73 E-value=0.15 Score=46.23 Aligned_cols=93 Identities=18% Similarity=0.219 Sum_probs=59.5
Q ss_pred cCCCCEEEEecCCCHHHHHH---HHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCCChh-
Q 025860 84 ESAPDLIAFETIPNKIEAQA---YAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTPPR- 159 (247)
Q Consensus 84 ~~gvD~i~~ET~~~~~E~~a---a~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~~p~- 159 (247)
+.|+|++.-|.++.-.=... ..+.+.....+.|+++++... +-+.+.++++.+.+ .++++|-+||++|.
T Consensus 29 ~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g~------~~~~~~~aa~~~~~-~G~d~IelN~gcP~~ 101 (319)
T TIGR00737 29 EYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFGS------DPDTMAEAAKINEE-LGADIIDINMGCPVP 101 (319)
T ss_pred HHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEeCC------CHHHHHHHHHHHHh-CCCCEEEEECCCCHH
Confidence 45789999998875422111 112222223368999888532 23455666766665 58999999998652
Q ss_pred ----------------HHHHHHHHHHhhcCCCEEEEeCCC
Q 025860 160 ----------------FISGLILIIKKVTAKPILIYPNSG 183 (247)
Q Consensus 160 ----------------~~~~~l~~l~~~~~~pl~vyPNaG 183 (247)
.+..+++.+++..+.|+.++-..|
T Consensus 102 ~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g 141 (319)
T TIGR00737 102 KITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIG 141 (319)
T ss_pred HhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcc
Confidence 334566777777789999886654
No 26
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=95.69 E-value=1.4 Score=39.96 Aligned_cols=170 Identities=11% Similarity=0.102 Sum_probs=104.2
Q ss_pred CeEEEEe--cCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCC-C
Q 025860 38 PILVAAS--VGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENI-K 114 (247)
Q Consensus 38 ~~~VaGs--iGP~g~~l~~g~eY~g~y~~~~s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~-~ 114 (247)
+.+|..+ +.||-..=++|--..| .+.-++-.+...+|+-.+.++|+|++.==.|.+- .+.++.+++.+.+. +
T Consensus 114 dl~vi~DVcLc~YT~hGHcGil~~g----~i~ND~Tl~~L~~~Als~A~AGADiVAPSdMMDG-rV~aIR~aLd~~g~~~ 188 (322)
T PRK13384 114 EMMVIPDICFCEYTDHGHCGVLHND----EVDNDATVENLVKQSVTAAKAGADMLAPSAMMDG-QVKAIRQGLDAAGFEH 188 (322)
T ss_pred CeEEEeeeecccCCCCCceeeccCC----cCccHHHHHHHHHHHHHHHHcCCCeEeccccccc-HHHHHHHHHHHCCCCC
Confidence 4566665 4566554444422222 1455677777777998999999999985554443 35667777776542 3
Q ss_pred CcEEEEEEEcC------------------C--CcccCCCcHHHHHHHHH--hCCCCeEEEEcCCChhHHHHHHHHHHhhc
Q 025860 115 IPAWFSFNSKD------------------G--VNVVSGDSLLECASIAE--SCKRVVSVGINCTPPRFISGLILIIKKVT 172 (247)
Q Consensus 115 ~pv~is~~~~~------------------~--~~l~~G~~~~~~~~~~~--~~~~~~avG~NC~~p~~~~~~l~~l~~~~ 172 (247)
.++ +|.+.+= + ....+=-.-.++++.+. -..|+|.|-|-=.-|. +.++..+++..
T Consensus 189 v~I-mSYsaKyaS~fYGPFRdAa~Sap~gDrksYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal~Y--LDIi~~~k~~~ 265 (322)
T PRK13384 189 VAI-LAHSAKFASSFYGPFRAAVDCELSGDRKSYQLDYANGRQALLEALLDEAEGADILMVKPGTPY--LDVLSRLRQET 265 (322)
T ss_pred Cce-eehhHhhhhhhcchHHHHhcCCCCCCcccccCCCCCHHHHHHHHHhhHhhCCCEEEEcCCchH--HHHHHHHHhcc
Confidence 443 3554320 1 11112222334444432 1358999988765443 67788888888
Q ss_pred CCCEEEEeCCCCc---ccccccccccCCCCChHHHHHHHHHHHHcCCeEE
Q 025860 173 AKPILIYPNSGEF---YDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLV 219 (247)
Q Consensus 173 ~~pl~vyPNaG~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iI 219 (247)
+.|+.+|--+|+- .......|... ...+.+....++.+|+.+|
T Consensus 266 ~lPvaaYqVSGEYaMikaAa~~G~~d~----~~~~~Esl~~~kRAGAd~I 311 (322)
T PRK13384 266 HLPLAAYQVGGEYAMIKFAALAGALDE----RAVVTETLGGLKRAGADLI 311 (322)
T ss_pred CCCEEEEEchHHHHHHHHHHHcCCccH----HHHHHHHHHHHHHcCCCEE
Confidence 9999999999962 22233467542 2447788888899999987
No 27
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=95.62 E-value=0.57 Score=42.68 Aligned_cols=94 Identities=11% Similarity=0.087 Sum_probs=56.9
Q ss_pred cCCCCEEEEecCCCHHHHHH---HHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCCCh--
Q 025860 84 ESAPDLIAFETIPNKIEAQA---YAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTPP-- 158 (247)
Q Consensus 84 ~~gvD~i~~ET~~~~~E~~a---a~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~~p-- 158 (247)
+.|+|+.+-|.++.-..... ............|+.+++.- .+.+.+.++++.+.+ .++++|-+||++|
T Consensus 31 ~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~g------~~~~~~~~aa~~~~~-~g~d~IdlN~gCP~~ 103 (321)
T PRK10415 31 EMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAG------SDPKEMADAARINVE-SGAQIIDINMGCPAK 103 (321)
T ss_pred HHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEeC------CCHHHHHHHHHHHHH-CCCCEEEEeCCCCHH
Confidence 35789998898886432111 11111111113567666621 122344455665555 5899999999754
Q ss_pred ---------------hHHHHHHHHHHhhcCCCEEEEeCCCC
Q 025860 159 ---------------RFISGLILIIKKVTAKPILIYPNSGE 184 (247)
Q Consensus 159 ---------------~~~~~~l~~l~~~~~~pl~vyPNaG~ 184 (247)
+.+.++++.+++..+.|+.+.-+.|.
T Consensus 104 ~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~ 144 (321)
T PRK10415 104 KVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGW 144 (321)
T ss_pred HHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccc
Confidence 45667777777777899998887663
No 28
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=95.59 E-value=1.1 Score=44.36 Aligned_cols=157 Identities=18% Similarity=0.119 Sum_probs=97.4
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEecCCCH----------HHH----HHHHHHHHhhCCCCcEEEEEEEcCCCcc-cC
Q 025860 67 TVETLKDFHRRRVQVLVESAPDLIAFETIPNK----------IEA----QAYAELLEEENIKIPAWFSFNSKDGVNV-VS 131 (247)
Q Consensus 67 s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~----------~E~----~aa~~~~~~~~~~~pv~is~~~~~~~~l-~~ 131 (247)
.++.+++.|+.-+ ++|+|+|.--|+..- +++ +.+++.+++.. +.+++|.-++-+-+.. ..
T Consensus 41 ~Pe~i~~vH~~yl----~AGAdvi~TnTy~as~~~l~~~g~~~~~~~l~~~av~lAr~a~-~~~~~VagsiGP~g~~~~~ 115 (612)
T PRK08645 41 HPELILRIHREYI----EAGADVIQTNTFGANRIKLKRYGLEDKVKEINRAAVRLAREAA-GDDVYVAGTIGPIGGRGPL 115 (612)
T ss_pred CHHHHHHHHHHHH----HhCCCEEecCcccccHHHHHhcCchHHHHHHHHHHHHHHHHHh-cCCCeEEEeCCCCCCCCCC
Confidence 5688888888765 489999987777321 222 23455666653 3567777776543332 11
Q ss_pred C-CcHHHHHH-------HHHhCCCCeEEEEcCC-ChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChH
Q 025860 132 G-DSLLECAS-------IAESCKRVVSVGINCT-PPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDE 202 (247)
Q Consensus 132 G-~~~~~~~~-------~~~~~~~~~avG~NC~-~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~ 202 (247)
| .+.+++.+ .+.+ .++|.|.+.-. +...+..+++.+++..+.|+++.-..- +. .. ... ..+.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~l~~-~gvD~l~~ET~~~~~Ea~a~~~a~~~~~~~p~~~Sf~~~---~~--g~-l~~-G~~~~ 187 (612)
T PRK08645 116 GDISLEEIRREFREQIDALLE-EGVDGLLLETFYDLEELLLALEAAREKTDLPIIAQVAFH---ED--GV-TQN-GTSLE 187 (612)
T ss_pred CCCCHHHHHHHHHHHHHHHHh-cCCCEEEEEccCCHHHHHHHHHHHHHhCCCcEEEEEEEC---CC--Ce-eCC-CCCHH
Confidence 2 34555433 3334 58999999986 677888888888765557865433221 11 00 111 12344
Q ss_pred HHHHHHHHHHHcCCeEEeecCCCChHHHHHHHHHhhC
Q 025860 203 DFVSYVSKWCEVGASLVGGCCRTTPNTIKGIYRTLSN 239 (247)
Q Consensus 203 ~~~~~~~~~~~~G~~iIGGCCGt~P~hI~al~~~l~~ 239 (247)
+..+. ..+.|+..||=.|..+|+++..+-+.+..
T Consensus 188 ~~~~~---~~~~~~~avGiNC~~~p~~~~~~l~~l~~ 221 (612)
T PRK08645 188 EALKE---LVAAGADVVGLNCGLGPYHMLEALERIPI 221 (612)
T ss_pred HHHHH---HHhCCCCEEEecCCCCHHHHHHHHHHHHh
Confidence 44444 44578999999999999999988766643
No 29
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=95.50 E-value=0.78 Score=41.44 Aligned_cols=106 Identities=16% Similarity=0.173 Sum_probs=73.0
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEE-----e-cCCCHHHHHHHHHHHHhh-CCCCcEEEEEEEcCCCcccCCCcHHHH
Q 025860 66 ITVETLKDFHRRRVQVLVESAPDLIAF-----E-TIPNKIEAQAYAELLEEE-NIKIPAWFSFNSKDGVNVVSGDSLLEC 138 (247)
Q Consensus 66 ~s~~e~~~~~~~q~~~l~~~gvD~i~~-----E-T~~~~~E~~aa~~~~~~~-~~~~pv~is~~~~~~~~l~~G~~~~~~ 138 (247)
++++. +++.++.+++.|||.|++ | ..-+.+|=+.+++.+.+. +.++|+++.. .+.+..++
T Consensus 22 vD~~a----~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~---------g~~~t~ea 88 (299)
T COG0329 22 VDEEA----LRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGV---------GSNSTAEA 88 (299)
T ss_pred cCHHH----HHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEec---------CCCcHHHH
Confidence 56655 455888889999998865 2 123467777777777664 3358998877 34556666
Q ss_pred HHHHHh--CCCCeEEEEcCC-----ChhHHHHHHHHHHhhcCCCEEEEeCCCC
Q 025860 139 ASIAES--CKRVVSVGINCT-----PPRFISGLILIIKKVTAKPILIYPNSGE 184 (247)
Q Consensus 139 ~~~~~~--~~~~~avG~NC~-----~p~~~~~~l~~l~~~~~~pl~vyPNaG~ 184 (247)
++..+. ..|++++-+=.- ..+.+..-++.+.+..+.|+++|=+.+.
T Consensus 89 i~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~ 141 (299)
T COG0329 89 IELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSR 141 (299)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 665432 368888877652 2466777777888888999999987654
No 30
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=95.49 E-value=0.57 Score=39.92 Aligned_cols=93 Identities=18% Similarity=0.260 Sum_probs=59.2
Q ss_pred CCCCEEEEecCCCHHHHH---HHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCCC----
Q 025860 85 SAPDLIAFETIPNKIEAQ---AYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTP---- 157 (247)
Q Consensus 85 ~gvD~i~~ET~~~~~E~~---aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~~---- 157 (247)
.|+|+++=|.+..-.=.. .-.........+.|+++++... +-+.+.++++.+.+ .++++|=+||++
T Consensus 22 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~g~------~~~~~~~aa~~~~~-aG~d~ieln~g~p~~~ 94 (231)
T cd02801 22 YGADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLGGS------DPETLAEAAKIVEE-LGADGIDLNMGCPSPK 94 (231)
T ss_pred HCCCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEcCC------CHHHHHHHHHHHHh-cCCCEEEEeCCCCHHH
Confidence 358999877665321111 1112222223468999999532 23455667776665 589999999864
Q ss_pred -------------hhHHHHHHHHHHhhcCCCEEEEeCCCC
Q 025860 158 -------------PRFISGLILIIKKVTAKPILIYPNSGE 184 (247)
Q Consensus 158 -------------p~~~~~~l~~l~~~~~~pl~vyPNaG~ 184 (247)
|+.+..+++.+++....|+.+.-|.|.
T Consensus 95 ~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~ 134 (231)
T cd02801 95 VTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGW 134 (231)
T ss_pred HhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeecc
Confidence 445677788887777788988877653
No 31
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=95.47 E-value=1.8 Score=39.41 Aligned_cols=170 Identities=18% Similarity=0.229 Sum_probs=102.6
Q ss_pred CeEEEEe--cCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCC-C
Q 025860 38 PILVAAS--VGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENI-K 114 (247)
Q Consensus 38 ~~~VaGs--iGP~g~~l~~g~eY~g~y~~~~s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~-~ 114 (247)
..+|..+ +.||-..=+.|---.+ .+.-++-.+...+|+-.+.++|+|++.==-|.+- .+.++.+++.+.+. +
T Consensus 109 ~l~vi~DVclc~YT~hGHcGil~~~----~idND~Tl~~L~~~Avs~A~AGADiVAPSdMMDG-rV~aIR~aLd~~g~~~ 183 (320)
T cd04823 109 ELGIITDVALDPYTSHGHDGIVRDG----GILNDETVEVLCKQALVQAEAGADIVAPSDMMDG-RIGAIREALDAEGFTN 183 (320)
T ss_pred CcEEEEeeeccCCCCCCcceeccCC----cCcCHHHHHHHHHHHHHHHHhCCCEEEcccchhh-HHHHHHHHHHHCCCCC
Confidence 4566665 4566544333321111 1455666777778999999999999985444432 34566677776542 3
Q ss_pred CcEEEEEEEcC-------------------C--CcccCCCcHHHHHHHHHh--CCCCeEEEEcCCChhHHHHHHHHHHhh
Q 025860 115 IPAWFSFNSKD-------------------G--VNVVSGDSLLECASIAES--CKRVVSVGINCTPPRFISGLILIIKKV 171 (247)
Q Consensus 115 ~pv~is~~~~~-------------------~--~~l~~G~~~~~~~~~~~~--~~~~~avG~NC~~p~~~~~~l~~l~~~ 171 (247)
.|++ |.+.+= + ....+=.+-.++++.+.. ..|+|.+-|-=.-|. +.+++.+++.
T Consensus 184 v~Im-SYsaKyaS~fYGPFRdAa~Sap~fgDRksYQmdp~n~~eAlre~~~Di~EGAD~lMVKPal~Y--LDIi~~~k~~ 260 (320)
T cd04823 184 VSIL-SYAAKYASAFYGPFRDALGSAPRKGDKKTYQMDPANSREALREVALDIAEGADMVMVKPGMPY--LDIIRRVKDE 260 (320)
T ss_pred Ccee-echHHhhhhccchhHHHhcCCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCchH--HHHHHHHHHh
Confidence 4443 554320 0 111122233444444421 358999888765433 6778888888
Q ss_pred cCCCEEEEeCCCC---cccccccccccCCCCChHHHHHHHHHHHHcCCeEE
Q 025860 172 TAKPILIYPNSGE---FYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLV 219 (247)
Q Consensus 172 ~~~pl~vyPNaG~---~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iI 219 (247)
.+.|+.+|--+|+ ........|... ...+.+....++.+|+.+|
T Consensus 261 ~~lPvaaYqVSGEYaMikaAa~~G~~d~----~~~~~Esl~~ikRAGAd~I 307 (320)
T cd04823 261 FGVPTFAYQVSGEYAMLKAAAQNGWLDE----DKVMLESLLAFKRAGADGI 307 (320)
T ss_pred cCCCEEEEEccHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHhcCCCEE
Confidence 8999999999996 222333467542 2346677788889999987
No 32
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=95.44 E-value=0.61 Score=42.89 Aligned_cols=123 Identities=19% Similarity=0.195 Sum_probs=72.5
Q ss_pred HHHHhcCCCCEEEEecCCCH---------------------------HHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccC
Q 025860 79 VQVLVESAPDLIAFETIPNK---------------------------IEAQAYAELLEEENIKIPAWFSFNSKDGVNVVS 131 (247)
Q Consensus 79 ~~~l~~~gvD~i~~ET~~~~---------------------------~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~ 131 (247)
++.+.+.|..++..=|++.. ..+...++-+++...+.|+++|+..... +..
T Consensus 75 ~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~~~l~~~~~~~pvivsI~~~~~--~~~ 152 (344)
T PRK05286 75 IDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADALAERLKKAYRGIPLGINIGKNKD--TPL 152 (344)
T ss_pred HHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCCCHhHHHHHHHHHHhcCCCcEEEEEecCCC--CCc
Confidence 33455678888877777542 1133344444433136899999965432 112
Q ss_pred CCcHHHHHHHHHhC-CCCeEEEEcCCCh-----------hHHHHHHHHHHhhcC-----CCEEEEeCCCCcccccccccc
Q 025860 132 GDSLLECASIAESC-KRVVSVGINCTPP-----------RFISGLILIIKKVTA-----KPILIYPNSGEFYDADRKEWV 194 (247)
Q Consensus 132 G~~~~~~~~~~~~~-~~~~avG~NC~~p-----------~~~~~~l~~l~~~~~-----~pl~vyPNaG~~~d~~~~~~~ 194 (247)
+.+.++.++.+... ..+++|-+|+++| +.+.++++.+++..+ .||++.-+.+
T Consensus 153 ~~~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~----------- 221 (344)
T PRK05286 153 EDAVDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPD----------- 221 (344)
T ss_pred ccCHHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCC-----------
Confidence 33445544444321 2489999998754 457788888887765 8888877532
Q ss_pred cCCCCChHHHHHHHHHHHHcCCeE
Q 025860 195 QNTGVSDEDFVSYVSKWCEVGASL 218 (247)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~G~~i 218 (247)
.+.+++.+.++.+.+.|++.
T Consensus 222 ----~~~~~~~~ia~~l~~~Gadg 241 (344)
T PRK05286 222 ----LSDEELDDIADLALEHGIDG 241 (344)
T ss_pred ----CCHHHHHHHHHHHHHhCCcE
Confidence 12344666666666666443
No 33
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=95.41 E-value=1.8 Score=38.29 Aligned_cols=105 Identities=18% Similarity=0.228 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEe-c-----CCCHHHHHHHHHHHHhh-CCCCcEEEEEEEcCCCcccCCCcHHHH
Q 025860 66 ITVETLKDFHRRRVQVLVESAPDLIAFE-T-----IPNKIEAQAYAELLEEE-NIKIPAWFSFNSKDGVNVVSGDSLLEC 138 (247)
Q Consensus 66 ~s~~e~~~~~~~q~~~l~~~gvD~i~~E-T-----~~~~~E~~aa~~~~~~~-~~~~pv~is~~~~~~~~l~~G~~~~~~ 138 (247)
++.+.++ .+++.+++.|||.|++= | .-+.+|-+.+++.+.+. +.+.|+++.+. +.+..++
T Consensus 15 iD~~~~~----~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~---------~~~~~~~ 81 (281)
T cd00408 15 VDLDALR----RLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVG---------ANSTREA 81 (281)
T ss_pred cCHHHHH----HHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecC---------CccHHHH
Confidence 5665544 48888888999998753 2 22467888888876654 33689998873 3345555
Q ss_pred HHHHH--hCCCCeEEEEcCC-----ChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 025860 139 ASIAE--SCKRVVSVGINCT-----PPRFISGLILIIKKVTAKPILIYPNSG 183 (247)
Q Consensus 139 ~~~~~--~~~~~~avG~NC~-----~p~~~~~~l~~l~~~~~~pl~vyPNaG 183 (247)
++..+ +..|++++.+--- +++.+...++.+.+..+.|+++|=|.+
T Consensus 82 i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~ 133 (281)
T cd00408 82 IELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNIPG 133 (281)
T ss_pred HHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECcc
Confidence 55443 1258898888662 246667777777777899999996643
No 34
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=95.37 E-value=1.1 Score=40.10 Aligned_cols=82 Identities=17% Similarity=0.230 Sum_probs=54.4
Q ss_pred CCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCC-CeEEEEcCCC-------------hhHHHHHHHHHHhhcCCCEEEE
Q 025860 114 KIPAWFSFNSKDGVNVVSGDSLLECASIAESCKR-VVSVGINCTP-------------PRFISGLILIIKKVTAKPILIY 179 (247)
Q Consensus 114 ~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~-~~avG~NC~~-------------p~~~~~~l~~l~~~~~~pl~vy 179 (247)
+.|+++|+... +-+.+.++++.+.+ .+ +++|=+||+. |+.+.++++.+++..+.||++.
T Consensus 91 ~~p~i~si~g~------~~~~~~~~a~~~~~-aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vK 163 (301)
T PRK07259 91 DTPIIANVAGS------TEEEYAEVAEKLSK-APNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVK 163 (301)
T ss_pred CCcEEEEeccC------CHHHHHHHHHHHhc-cCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 58999999532 12345566666655 46 9999999843 3557788888888888999887
Q ss_pred eCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEE
Q 025860 180 PNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLV 219 (247)
Q Consensus 180 PNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iI 219 (247)
-+.. .+++.+.++.+.+.|+..|
T Consensus 164 l~~~-----------------~~~~~~~a~~l~~~G~d~i 186 (301)
T PRK07259 164 LTPN-----------------VTDIVEIAKAAEEAGADGL 186 (301)
T ss_pred cCCC-----------------chhHHHHHHHHHHcCCCEE
Confidence 6531 1234555566666776543
No 35
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=95.35 E-value=2 Score=39.07 Aligned_cols=170 Identities=16% Similarity=0.205 Sum_probs=104.3
Q ss_pred CeEEEEe--cCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCC-C
Q 025860 38 PILVAAS--VGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENI-K 114 (247)
Q Consensus 38 ~~~VaGs--iGP~g~~l~~g~eY~g~y~~~~s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~-~ 114 (247)
+..|..+ +.||-..=++|---.|. +.-++-.+...+|+-.+.++|+|++.==-|.+- .+.++.+++.+.+. +
T Consensus 112 ~l~vi~DVcLc~YT~hGHcGil~~g~----idND~Tl~~L~~~Al~~A~AGaDiVAPSdMMDG-rV~aIR~aLd~~g~~~ 186 (323)
T PRK09283 112 ELGVITDVCLDEYTSHGHCGILEDGY----VDNDETLELLAKQALSQAEAGADIVAPSDMMDG-RVGAIREALDEAGFTD 186 (323)
T ss_pred CcEEEEeeeccCCCCCCceecccCCc----CcCHHHHHHHHHHHHHHHHhCCCEEEccccccc-HHHHHHHHHHHCCCCC
Confidence 4566665 45665544444211122 455777777888999999999999985544443 34666777776542 3
Q ss_pred CcEEEEEEEcC-------------------C--CcccCCCcHHHHHHHHH--hCCCCeEEEEcCCChhHHHHHHHHHHhh
Q 025860 115 IPAWFSFNSKD-------------------G--VNVVSGDSLLECASIAE--SCKRVVSVGINCTPPRFISGLILIIKKV 171 (247)
Q Consensus 115 ~pv~is~~~~~-------------------~--~~l~~G~~~~~~~~~~~--~~~~~~avG~NC~~p~~~~~~l~~l~~~ 171 (247)
.++ +|.+.+= + ....+-.+-.++++.+. -..|+|.|-|-=.-|. +.+++.+++.
T Consensus 187 v~I-mSYsaKyaS~fYGPFRdA~~Sap~~gDrktYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal~Y--LDIi~~~k~~ 263 (323)
T PRK09283 187 VPI-MSYSAKYASAFYGPFRDAAGSAPQFGDRKTYQMDPANRREALREVALDIEEGADMVMVKPALPY--LDIIRRVKDE 263 (323)
T ss_pred Cce-eecHHHHHHhhhHHHHHHHhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCchH--HHHHHHHHhc
Confidence 443 3554320 0 11222233344444442 1358999988766443 6788888888
Q ss_pred cCCCEEEEeCCCC---cccccccccccCCCCChHHHHHHHHHHHHcCCeEE
Q 025860 172 TAKPILIYPNSGE---FYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLV 219 (247)
Q Consensus 172 ~~~pl~vyPNaG~---~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iI 219 (247)
.+.|+.+|--+|+ ........|... ...+.+....++.+|+.+|
T Consensus 264 ~~~PvaaYqVSGEYaMikaAa~~G~~D~----~~~~~Esl~~~kRAGAd~I 310 (323)
T PRK09283 264 FNLPVAAYQVSGEYAMIKAAAQNGWIDE----ERVVLESLLSIKRAGADGI 310 (323)
T ss_pred CCCCEEEEEccHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHhcCCCEE
Confidence 8999999999996 222233466532 2346677888889999887
No 36
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=95.30 E-value=0.8 Score=40.87 Aligned_cols=82 Identities=18% Similarity=0.252 Sum_probs=53.9
Q ss_pred CCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCCCh-------------hHHHHHHHHHHhhcCCCEEEEe
Q 025860 114 KIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTPP-------------RFISGLILIIKKVTAKPILIYP 180 (247)
Q Consensus 114 ~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~~p-------------~~~~~~l~~l~~~~~~pl~vyP 180 (247)
+.|+.+|+... +-+.+.++++.+.+ .++++|=+|+++| +.+.++++.+++..+.|+++.-
T Consensus 89 ~~p~ivsi~g~------~~~~~~~~a~~~~~-~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl 161 (296)
T cd04740 89 GTPVIASIAGS------TVEEFVEVAEKLAD-AGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKL 161 (296)
T ss_pred CCcEEEEEecC------CHHHHHHHHHHHHH-cCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 58999999532 12345566666666 4899999998643 4566778888887789998875
Q ss_pred CCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEE
Q 025860 181 NSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLV 219 (247)
Q Consensus 181 NaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iI 219 (247)
+.. .+++.+.++...+.|+..|
T Consensus 162 ~~~-----------------~~~~~~~a~~~~~~G~d~i 183 (296)
T cd04740 162 TPN-----------------VTDIVEIARAAEEAGADGL 183 (296)
T ss_pred CCC-----------------chhHHHHHHHHHHcCCCEE
Confidence 321 1234455555666776543
No 37
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=95.20 E-value=0.55 Score=43.30 Aligned_cols=136 Identities=15% Similarity=0.096 Sum_probs=76.6
Q ss_pred HHHHHhcCCCCEEEEecCCCHHHHHHHHHH-HHhhCCCCcEEEEEEEcCCCcc---c---CCCcHHHHHHHHHhCCCCeE
Q 025860 78 RVQVLVESAPDLIAFETIPNKIEAQAYAEL-LEEENIKIPAWFSFNSKDGVNV---V---SGDSLLECASIAESCKRVVS 150 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~-~~~~~~~~pv~is~~~~~~~~l---~---~G~~~~~~~~~~~~~~~~~a 150 (247)
.++.+.++|+|.++.= +.+++. .+....+.|+++-++-...-.. . --.++++|++ .++++
T Consensus 96 ~i~~a~~~g~dAv~~~--------~G~l~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlr-----LGAdA 162 (348)
T PRK09250 96 IVKLAIEAGCNAVAST--------LGVLEAVARKYAHKIPFILKLNHNELLSYPNTYDQALTASVEDALR-----LGAVA 162 (348)
T ss_pred HHHHHHhcCCCEEEeC--------HHHHHhccccccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHH-----CCCCE
Confidence 5556677899999842 444443 3444346898888763211100 0 1123444443 58899
Q ss_pred EEEcCC-ChhHHHHHHHHHHh------hcCCCEE--EEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEEee
Q 025860 151 VGINCT-PPRFISGLILIIKK------VTAKPIL--IYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGG 221 (247)
Q Consensus 151 vG~NC~-~p~~~~~~l~~l~~------~~~~pl~--vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iIGG 221 (247)
||+..- +.+.-...|+.+.+ .+..|++ +||-.....+.. ++. .+|+..+..++--.++||.||==
T Consensus 163 V~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~--d~~----~~~d~Ia~AaRiaaELGADIVKv 236 (348)
T PRK09250 163 VGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDG--DYH----TAADLTGQANHLAATIGADIIKQ 236 (348)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcc--ccc----ccHHHHHHHHHHHHHHcCCEEEe
Confidence 999884 43322333333322 2578965 588765543321 111 24677777778888999999875
Q ss_pred cCCCChHHHHH
Q 025860 222 CCRTTPNTIKG 232 (247)
Q Consensus 222 CCGt~P~hI~a 232 (247)
=.-++++..+.
T Consensus 237 ~yp~~~~~f~~ 247 (348)
T PRK09250 237 KLPTNNGGYKA 247 (348)
T ss_pred cCCCChhhHHH
Confidence 44444444333
No 38
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=95.14 E-value=0.59 Score=41.91 Aligned_cols=105 Identities=11% Similarity=0.026 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHHHHHHhcCC-CCEEEEe------cCCCHHHHHHHHHHHHh-hCCCCcEEEEEEEcCCCcccCCCcHHH
Q 025860 66 ITVETLKDFHRRRVQVLVESA-PDLIAFE------TIPNKIEAQAYAELLEE-ENIKIPAWFSFNSKDGVNVVSGDSLLE 137 (247)
Q Consensus 66 ~s~~e~~~~~~~q~~~l~~~g-vD~i~~E------T~~~~~E~~aa~~~~~~-~~~~~pv~is~~~~~~~~l~~G~~~~~ 137 (247)
++.+.+ +.+++.+++.| ||.|++= ..-+.+|-+.+++.+.+ .+.++|+++.+. +.+..+
T Consensus 18 iD~~~~----~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~---------~~~t~~ 84 (290)
T TIGR00683 18 INEKGL----RQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVG---------SVNLKE 84 (290)
T ss_pred cCHHHH----HHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecC---------CCCHHH
Confidence 555554 44788888899 9998653 34467888888876555 333589998873 334555
Q ss_pred HHHHHHh--CCCCeEEEEcC-----CChhHHHHHHHHHHhhc-CCCEEEEeCCC
Q 025860 138 CASIAES--CKRVVSVGINC-----TPPRFISGLILIIKKVT-AKPILIYPNSG 183 (247)
Q Consensus 138 ~~~~~~~--~~~~~avG~NC-----~~p~~~~~~l~~l~~~~-~~pl~vyPNaG 183 (247)
+++..+. ..|+++|.+-= ...+.+..-.+.+.+.. +.|+++|-|-+
T Consensus 85 ~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~ 138 (290)
T TIGR00683 85 AVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIPF 138 (290)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCcc
Confidence 5554432 25888877721 12356666667775555 79999997754
No 39
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=95.09 E-value=2.5 Score=38.36 Aligned_cols=171 Identities=14% Similarity=0.167 Sum_probs=104.6
Q ss_pred CeEEEEe--cCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCC--
Q 025860 38 PILVAAS--VGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENI-- 113 (247)
Q Consensus 38 ~~~VaGs--iGP~g~~l~~g~eY~g~y~~~~s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~-- 113 (247)
..+|..+ +.||-..=+.|---.+ ..+.-++-.+...+|+-.+.++|+|++.==.|.+- .+.++.+++.+.+.
T Consensus 107 dl~vi~Dvclc~YT~hGHcGil~~~---g~vdND~Tl~~L~k~Avs~A~AGADiVAPSdMMDG-rV~aIR~aLD~~G~~~ 182 (320)
T cd04824 107 ELLIACDVCLCEYTSHGHCGILYED---GTINNEASVKRLAEVALAYAKAGAHIVAPSDMMDG-RVRAIKQALIQAGLGN 182 (320)
T ss_pred CcEEEEeeeccCCCCCCcceeECCC---CcCcCHHHHHHHHHHHHHHHHhCCCEEeccccccc-HHHHHHHHHHHCCCcc
Confidence 4556655 4566544333321111 11455666677777998899999999985555443 35667777777654
Q ss_pred CCcEEEEEEEcC-------------------C--CcccCCCcHHHHHHHHH--hCCCCeEEEEcCCChhHHHHHHHHHHh
Q 025860 114 KIPAWFSFNSKD-------------------G--VNVVSGDSLLECASIAE--SCKRVVSVGINCTPPRFISGLILIIKK 170 (247)
Q Consensus 114 ~~pv~is~~~~~-------------------~--~~l~~G~~~~~~~~~~~--~~~~~~avG~NC~~p~~~~~~l~~l~~ 170 (247)
+.|+ +|.+.+= + ....+=.+-.++++.+. -..|+|.|-|-=.-|. +.+++.+++
T Consensus 183 ~v~I-mSYsaKyaS~fYGPFRdAa~Sap~~gDRksYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal~Y--LDIi~~~k~ 259 (320)
T cd04824 183 KVSV-MSYSAKFASCLYGPFRDAACSAPSFGDRRCYQLPPGARGLALRAVERDVSEGADMIMVKPGTPY--LDIVREAKD 259 (320)
T ss_pred CCee-eehHHHhhhhccchHHHHhcCCCCCCCccccCCCCcCHHHHHHHHHhhHHhCCCEEEEcCCchH--HHHHHHHHH
Confidence 3444 3655320 0 11122233344554432 1358999988765443 678888888
Q ss_pred hc-CCCEEEEeCCCC---cccccccccccCCCCChHHHHHHHHHHHHcCCeEE
Q 025860 171 VT-AKPILIYPNSGE---FYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLV 219 (247)
Q Consensus 171 ~~-~~pl~vyPNaG~---~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iI 219 (247)
.. +.|+.+|--+|+ ........|... ...+.+....++.+|+.+|
T Consensus 260 ~~~~~PvaaYqVSGEYaMikaAa~~G~iDe----~~~~~Esl~~ikRAGAd~I 308 (320)
T cd04824 260 KHPDLPLAVYHVSGEYAMLHAAAEAGAFDL----KRAVLEAMTGFRRAGADII 308 (320)
T ss_pred hccCCCEEEEEccHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHhcCCCEE
Confidence 88 999999999996 222233567542 2346778888899999987
No 40
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=95.03 E-value=0.53 Score=41.92 Aligned_cols=104 Identities=19% Similarity=0.218 Sum_probs=71.3
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEe-c-----CCCHHHHHHHHHHHHh-hCCCCcEEEEEEEcCCCcccCCCcHHHH
Q 025860 66 ITVETLKDFHRRRVQVLVESAPDLIAFE-T-----IPNKIEAQAYAELLEE-ENIKIPAWFSFNSKDGVNVVSGDSLLEC 138 (247)
Q Consensus 66 ~s~~e~~~~~~~q~~~l~~~gvD~i~~E-T-----~~~~~E~~aa~~~~~~-~~~~~pv~is~~~~~~~~l~~G~~~~~~ 138 (247)
++.+. +++.++.+++.|||.|++= | .-+.+|-+.+++.+.+ .+.+.|+++.+. +.+..++
T Consensus 19 id~~~----~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~---------~~st~~~ 85 (289)
T PF00701_consen 19 IDEDA----LKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG---------ANSTEEA 85 (289)
T ss_dssp B-HHH----HHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE---------SSSHHHH
T ss_pred cCHHH----HHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCc---------chhHHHH
Confidence 55544 5558888889999999873 2 2246677777776655 344689999884 4466776
Q ss_pred HHHHHh--CCCCeEEEEcC-----CChhHHHHHHHHHHhhcCCCEEEEeCC
Q 025860 139 ASIAES--CKRVVSVGINC-----TPPRFISGLILIIKKVTAKPILIYPNS 182 (247)
Q Consensus 139 ~~~~~~--~~~~~avG~NC-----~~p~~~~~~l~~l~~~~~~pl~vyPNa 182 (247)
++.++. ..+++++-+-- .+.+.+....+.+.+.++.|+++|-+.
T Consensus 86 i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P 136 (289)
T PF00701_consen 86 IELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADATDLPIIIYNNP 136 (289)
T ss_dssp HHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEEEEBH
T ss_pred HHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhhcCCCEEEEECC
Confidence 665542 35888877643 135677788888888899999999885
No 41
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=94.97 E-value=2.6 Score=37.79 Aligned_cols=119 Identities=11% Similarity=0.088 Sum_probs=75.7
Q ss_pred eEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEe-c-----CCCHHHHHHHHHHHHhh-
Q 025860 39 ILVAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFE-T-----IPNKIEAQAYAELLEEE- 111 (247)
Q Consensus 39 ~~VaGsiGP~g~~l~~g~eY~g~y~~~~s~~e~~~~~~~q~~~l~~~gvD~i~~E-T-----~~~~~E~~aa~~~~~~~- 111 (247)
-.+...+-|+-. +. .++.+.+ +.+++.+++.|||.|++= | .-+.+|-+.+++.+.+.
T Consensus 8 Gi~~a~vTPf~~----------dg--~iD~~~l----~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~ 71 (296)
T TIGR03249 8 GLLSFPVTPFDA----------DG--SFDEAAY----RENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTA 71 (296)
T ss_pred ceEEeeeCCcCC----------CC--CcCHHHH----HHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHh
Confidence 456666777742 11 2566554 448888889999998763 2 34577878888765553
Q ss_pred CCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHh--CCCCeEEEEcCC-----ChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 025860 112 NIKIPAWFSFNSKDGVNVVSGDSLLECASIAES--CKRVVSVGINCT-----PPRFISGLILIIKKVTAKPILIYPNSG 183 (247)
Q Consensus 112 ~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~--~~~~~avG~NC~-----~p~~~~~~l~~l~~~~~~pl~vyPNaG 183 (247)
..++|+++.+. .+..++++.++. ..|++++.+--- +.+.+..-.+.+.+..+.|+++|=+.|
T Consensus 72 ~g~~pvi~gv~----------~~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn~~g 140 (296)
T TIGR03249 72 KGKVPVYTGVG----------GNTSDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQRDN 140 (296)
T ss_pred CCCCcEEEecC----------ccHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEeCCC
Confidence 33589998862 134555554432 258888877542 135566666677777789999995333
No 42
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=94.96 E-value=1 Score=44.63 Aligned_cols=95 Identities=15% Similarity=0.150 Sum_probs=67.7
Q ss_pred HhcCCCCEE-EEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCC----
Q 025860 82 LVESAPDLI-AFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT---- 156 (247)
Q Consensus 82 l~~~gvD~i-~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~---- 156 (247)
..+.|+|+| +|..+.++.-++..++++++.+ .-+..++++..... -+=+.+.+.++.+.+ .|++.|.|-=+
T Consensus 105 a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G--~~~~~~i~yt~sp~-~t~e~~~~~ak~l~~-~Gad~I~IkDtaG~l 180 (596)
T PRK14042 105 AVNNGVDVFRVFDALNDARNLKVAIDAIKSHK--KHAQGAICYTTSPV-HTLDNFLELGKKLAE-MGCDSIAIKDMAGLL 180 (596)
T ss_pred HHHcCCCEEEEcccCcchHHHHHHHHHHHHcC--CEEEEEEEecCCCC-CCHHHHHHHHHHHHH-cCCCEEEeCCcccCC
Confidence 457999998 7788899999999999999985 45555544433221 122344456666666 58888887654
Q ss_pred ChhHHHHHHHHHHhhcCCCEEEEe
Q 025860 157 PPRFISGLILIIKKVTAKPILIYP 180 (247)
Q Consensus 157 ~p~~~~~~l~~l~~~~~~pl~vyP 180 (247)
.|..+..+++.+++..+.||.+.-
T Consensus 181 ~P~~v~~lv~alk~~~~ipi~~H~ 204 (596)
T PRK14042 181 TPTVTVELYAGLKQATGLPVHLHS 204 (596)
T ss_pred CHHHHHHHHHHHHhhcCCEEEEEe
Confidence 399999999999988778876554
No 43
>PRK06852 aldolase; Validated
Probab=94.94 E-value=0.79 Score=41.60 Aligned_cols=100 Identities=12% Similarity=0.127 Sum_probs=53.8
Q ss_pred HHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCc--------ccCCCcHHHHHHHHHh-CCCC
Q 025860 78 RVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVN--------VVSGDSLLECASIAES-CKRV 148 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~--------l~~G~~~~~~~~~~~~-~~~~ 148 (247)
.++.+.++|+|.|+.= +-+++.......++|+++-++-...-. -.--.+++++++.-.+ ..++
T Consensus 64 ~i~~~~~~g~dav~~~--------~G~l~~~~~~~~~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVeeAvrlG~~~~~~A 135 (304)
T PRK06852 64 LFRIASKAKIGVFATQ--------LGLIARYGMDYPDVPYLVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEFKENSGLNI 135 (304)
T ss_pred HHHHHHhcCCCEEEeC--------HHHHHhhccccCCCcEEEEECCCCCcCCcccCCccccceecHHHHHhcCCccCCCc
Confidence 5556677899999843 444443333334789888887421110 0122346666652110 1358
Q ss_pred eEEEEcCC-ChhHHHHHHHHHHh------hcCCCEE--EEeCCCCc
Q 025860 149 VSVGINCT-PPRFISGLILIIKK------VTAKPIL--IYPNSGEF 185 (247)
Q Consensus 149 ~avG~NC~-~p~~~~~~l~~l~~------~~~~pl~--vyPNaG~~ 185 (247)
++|++..- +.+.=.+.|+.+.+ .+..|++ +||-....
T Consensus 136 dAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i 181 (304)
T PRK06852 136 LGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAV 181 (304)
T ss_pred eEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCccc
Confidence 89999884 43222233332222 2578975 68876544
No 44
>PLN02489 homocysteine S-methyltransferase
Probab=94.93 E-value=3 Score=38.31 Aligned_cols=158 Identities=16% Similarity=0.156 Sum_probs=93.2
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEecCCC-----------HHHHH----HHHHHHHhhC-------------------
Q 025860 67 TVETLKDFHRRRVQVLVESAPDLIAFETIPN-----------KIEAQ----AYAELLEEEN------------------- 112 (247)
Q Consensus 67 s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~-----------~~E~~----aa~~~~~~~~------------------- 112 (247)
.++.+++.|++-+ ++|+|+|.--|+.. .+|++ .+++.+++.-
T Consensus 53 ~Pe~V~~vH~~yl----~AGAdvI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~ 128 (335)
T PLN02489 53 SPHLIRKVHLDYL----EAGADIIITASYQATIQGFESRGLSREESETLLRKSVEIACEARDIFWDKCQKGSTSRPGREL 128 (335)
T ss_pred CHHHHHHHHHHHH----HhCCCEEEecccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccc
Confidence 4577888888765 48999887777642 13322 2233333221
Q ss_pred CCCcEEEEEEEcCCCc-ccCC----------CcHHHHHHH-------HHhCCCCeEEEEcCC-ChhHHHHHHHHHHhhc-
Q 025860 113 IKIPAWFSFNSKDGVN-VVSG----------DSLLECASI-------AESCKRVVSVGINCT-PPRFISGLILIIKKVT- 172 (247)
Q Consensus 113 ~~~pv~is~~~~~~~~-l~~G----------~~~~~~~~~-------~~~~~~~~avG~NC~-~p~~~~~~l~~l~~~~- 172 (247)
.+.|++|.-++-+-+. +.+| .+.+++.+. +.+ .++|.|.+--. +...+..+++.++...
T Consensus 129 ~~~~~~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~~~~~~qi~~l~~-~gvD~i~~ET~~~l~E~~a~~~~~~~~~~ 207 (335)
T PLN02489 129 SYRPILVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAE-AGPDLIAFETIPNKLEAQAYVELLEEENI 207 (335)
T ss_pred CCCCcEEEEEcCCccccccCCcccCCCCccCCCHHHHHHHHHHHHHHHHh-CCCCEEEEeccCChHHHHHHHHHHHHcCC
Confidence 1357888888765543 2222 455655443 333 58999999986 6777777888777653
Q ss_pred CCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEEeecCCCChHHHHHHHHHhhC
Q 025860 173 AKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCRTTPNTIKGIYRTLSN 239 (247)
Q Consensus 173 ~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iIGGCCGt~P~hI~al~~~l~~ 239 (247)
++|+++.-.. .++. . . ....+.++..+.+.+ ..++..||==| ++|+++..+-+.+..
T Consensus 208 ~~p~~iS~t~---~~~~--~-l-~~G~~~~~~~~~~~~--~~~~~~iGiNC-~~p~~~~~~l~~l~~ 264 (335)
T PLN02489 208 KIPAWISFNS---KDGV--N-V-VSGDSLLECASIADS--CKKVVAVGINC-TPPRFIHGLILSIRK 264 (335)
T ss_pred CCeEEEEEEe---CCCC--c-c-CCCCcHHHHHHHHHh--cCCceEEEecC-CCHHHHHHHHHHHHh
Confidence 5786544432 1110 0 1 111234444444422 13688899988 499999998777754
No 45
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=94.92 E-value=1.8 Score=37.57 Aligned_cols=148 Identities=12% Similarity=0.012 Sum_probs=86.3
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEecCCCH------HHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHH
Q 025860 66 ITVETLKDFHRRRVQVLVESAPDLIAFETIPNK------IEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECA 139 (247)
Q Consensus 66 ~s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~------~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~ 139 (247)
.+.++..+ .++.|.+.|||.|=+-..... .....+++.+++...+.++. .+. . .| .+.+
T Consensus 16 ~s~e~~~~----i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~-~l~-~------~~---~~~i 80 (265)
T cd03174 16 FSTEDKLE----IAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQ-ALV-R------NR---EKGI 80 (265)
T ss_pred CCHHHHHH----HHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEE-EEc-c------Cc---hhhH
Confidence 46777666 556667789999866655544 45555666666653233333 222 1 12 4455
Q ss_pred HHHHhCCCCeEEEEcCCCh----------------hHHHHHHHHHHhhcCCCEEEEe-CCCCcccccccccccCCCCChH
Q 025860 140 SIAESCKRVVSVGINCTPP----------------RFISGLILIIKKVTAKPILIYP-NSGEFYDADRKEWVQNTGVSDE 202 (247)
Q Consensus 140 ~~~~~~~~~~avG~NC~~p----------------~~~~~~l~~l~~~~~~pl~vyP-NaG~~~d~~~~~~~~~~~~~~~ 202 (247)
+.+.+ .+++.|.+-+... +.+...++..++. ..++.+.. .++.+ ..+++
T Consensus 81 ~~a~~-~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~-G~~v~~~~~~~~~~------------~~~~~ 146 (265)
T cd03174 81 ERALE-AGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEA-GLEVEGSLEDAFGC------------KTDPE 146 (265)
T ss_pred HHHHh-CCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC-CCeEEEEEEeecCC------------CCCHH
Confidence 55555 4678877777532 2233333333332 34444333 22110 13578
Q ss_pred HHHHHHHHHHHcCCeEEeecC---CCChHHHHHHHHHhhCCCC
Q 025860 203 DFVSYVSKWCEVGASLVGGCC---RTTPNTIKGIYRTLSNRSS 242 (247)
Q Consensus 203 ~~~~~~~~~~~~G~~iIGGCC---Gt~P~hI~al~~~l~~~~~ 242 (247)
++.+.++.+.+.|+..|.=|= ..+|+.++.+-+.+.+..+
T Consensus 147 ~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~ 189 (265)
T cd03174 147 YVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREALP 189 (265)
T ss_pred HHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCC
Confidence 899999999999998876321 1489999988777765443
No 46
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=94.88 E-value=2.9 Score=37.93 Aligned_cols=170 Identities=15% Similarity=0.198 Sum_probs=104.1
Q ss_pred CeEEEEe--cCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCC-C
Q 025860 38 PILVAAS--VGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENI-K 114 (247)
Q Consensus 38 ~~~VaGs--iGP~g~~l~~g~eY~g~y~~~~s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~-~ 114 (247)
...|..+ +.||-..=++|---.+ .+.-++-.+...+|+-...++|+|++.==-|.+- .+.++.+++.+.+. +
T Consensus 104 ~l~vi~DvcLc~YT~hGHcGil~~~----~idND~Tl~~L~k~Als~A~AGADiVAPSdMMDG-rV~aIR~aLd~~g~~~ 178 (314)
T cd00384 104 ELVVITDVCLCEYTDHGHCGILKDD----YVDNDATLELLAKIAVSHAEAGADIVAPSDMMDG-RVAAIREALDEAGFSD 178 (314)
T ss_pred CcEEEEeeeccCCCCCCcceeccCC----cCccHHHHHHHHHHHHHHHHcCCCeeeccccccc-HHHHHHHHHHHCCCCC
Confidence 3455554 4566544444322112 2555777777888999999999999985444443 35667777776542 3
Q ss_pred CcEEEEEEEcC-------------------C--CcccCCCcHHHHHHHHH--hCCCCeEEEEcCCChhHHHHHHHHHHhh
Q 025860 115 IPAWFSFNSKD-------------------G--VNVVSGDSLLECASIAE--SCKRVVSVGINCTPPRFISGLILIIKKV 171 (247)
Q Consensus 115 ~pv~is~~~~~-------------------~--~~l~~G~~~~~~~~~~~--~~~~~~avG~NC~~p~~~~~~l~~l~~~ 171 (247)
.|++ |.+.+= + ....+-.+-.++++.+. -..|+|.|-|-=.-|. +.+++.+++.
T Consensus 179 v~Im-sYsaKyaSafYGPFRdAa~Sap~~gDRktYQmdpan~~eAlre~~~D~~EGAD~lMVKPal~Y--LDIi~~~k~~ 255 (314)
T cd00384 179 VPIM-SYSAKYASAFYGPFRDAADSAPSFGDRKTYQMDPANRREALREVELDIEEGADILMVKPALAY--LDIIRDVRER 255 (314)
T ss_pred Ccee-ecHHHhhhhccchHHHHhhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCchH--HHHHHHHHHh
Confidence 4443 554320 1 11122223344554442 1358999988765443 6788888888
Q ss_pred cCCCEEEEeCCCC---cccccccccccCCCCChHHHHHHHHHHHHcCCeEE
Q 025860 172 TAKPILIYPNSGE---FYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLV 219 (247)
Q Consensus 172 ~~~pl~vyPNaG~---~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iI 219 (247)
.+.|+.+|--+|+ ......+.|... ..-+.+....++.+|+.+|
T Consensus 256 ~~~PvaaYqVSGEYaMikaAa~~G~id~----~~~~~Esl~~~kRAGAd~I 302 (314)
T cd00384 256 FDLPVAAYNVSGEYAMIKAAAKNGWIDE----ERVVLESLTSIKRAGADLI 302 (314)
T ss_pred cCCCEEEEEccHHHHHHHHHHHcCCccH----HHHHHHHHHHHHhcCCCEE
Confidence 8999999999996 222334567542 2346677788889999887
No 47
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=94.85 E-value=2.3 Score=38.01 Aligned_cols=117 Identities=12% Similarity=0.103 Sum_probs=75.3
Q ss_pred EEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEe-c-----CCCHHHHHHHHHHHHh-hC
Q 025860 40 LVAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFE-T-----IPNKIEAQAYAELLEE-EN 112 (247)
Q Consensus 40 ~VaGsiGP~g~~l~~g~eY~g~y~~~~s~~e~~~~~~~q~~~l~~~gvD~i~~E-T-----~~~~~E~~aa~~~~~~-~~ 112 (247)
.+...+-|+.. + ..++.+.++. +++.+++.|||.|++- | .-+.+|-+.+++.+.+ ..
T Consensus 4 i~~a~vTPf~~----------d--g~iD~~~l~~----l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~ 67 (289)
T cd00951 4 LLSFPVTHFDA----------D--GSFDEDAYRA----HVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETA 67 (289)
T ss_pred eEEEeecCCCC----------C--CCcCHHHHHH----HHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC
Confidence 45566777742 1 1266666544 8888888999998654 2 3356777777776554 33
Q ss_pred CCCcEEEEEEEcCCCcccCCCcHHHHH---HHHHhCCCCeEEEEcCC-----ChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 025860 113 IKIPAWFSFNSKDGVNVVSGDSLLECA---SIAESCKRVVSVGINCT-----PPRFISGLILIIKKVTAKPILIYPNSG 183 (247)
Q Consensus 113 ~~~pv~is~~~~~~~~l~~G~~~~~~~---~~~~~~~~~~avG~NC~-----~p~~~~~~l~~l~~~~~~pl~vyPNaG 183 (247)
.++||++++.+ +..+++ +.+.+ .|++++.+--- +.+.+...++.+.+..+.|+++|=+.|
T Consensus 68 ~~~pvi~gv~~----------~t~~~i~~a~~a~~-~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~~g 135 (289)
T cd00951 68 GRVPVLAGAGY----------GTATAIAYAQAAEK-AGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNRAN 135 (289)
T ss_pred CCCCEEEecCC----------CHHHHHHHHHHHHH-hCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 36899988742 233443 33444 58898877442 235566677777777889999996655
No 48
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=94.81 E-value=1 Score=40.81 Aligned_cols=105 Identities=14% Similarity=0.103 Sum_probs=70.7
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEE-----e-cCCCHHHHHHHHHHHHh-hCCCCcEEEEEEEcCCCcccCCCcHHHH
Q 025860 66 ITVETLKDFHRRRVQVLVESAPDLIAF-----E-TIPNKIEAQAYAELLEE-ENIKIPAWFSFNSKDGVNVVSGDSLLEC 138 (247)
Q Consensus 66 ~s~~e~~~~~~~q~~~l~~~gvD~i~~-----E-T~~~~~E~~aa~~~~~~-~~~~~pv~is~~~~~~~~l~~G~~~~~~ 138 (247)
++.+.++ ++++.+++.|||.|++ | ..-+.+|-+.+++.+.+ .+.++||++... ..+..++
T Consensus 26 iD~~~l~----~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~---------~~~t~~a 92 (309)
T cd00952 26 VDLDETA----RLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGAT---------TLNTRDT 92 (309)
T ss_pred cCHHHHH----HHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEec---------cCCHHHH
Confidence 5655544 4888899999999876 2 22356787778876654 343689998873 3345555
Q ss_pred HHHHHh--CCCCeEEEEcCC-----ChhHHHHHHHHHHhhc-CCCEEEEeCCC
Q 025860 139 ASIAES--CKRVVSVGINCT-----PPRFISGLILIIKKVT-AKPILIYPNSG 183 (247)
Q Consensus 139 ~~~~~~--~~~~~avG~NC~-----~p~~~~~~l~~l~~~~-~~pl~vyPNaG 183 (247)
++.++. ..|++++.+-=- +.+.+..-.+.+.+.. +.|+++|-|-.
T Consensus 93 i~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P~ 145 (309)
T cd00952 93 IARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANPE 145 (309)
T ss_pred HHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCch
Confidence 554432 258888877642 2466677777787778 69999996643
No 49
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=94.72 E-value=0.92 Score=41.23 Aligned_cols=91 Identities=16% Similarity=0.117 Sum_probs=54.5
Q ss_pred CCCEEEEecCCCHHHH---HHH---HHHHH---hhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCC
Q 025860 86 APDLIAFETIPNKIEA---QAY---AELLE---EENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT 156 (247)
Q Consensus 86 gvD~i~~ET~~~~~E~---~aa---~~~~~---~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~ 156 (247)
|+|+.+=|.++.-.-. +.. ...+. ....+.|+.+++.-. +-+.+.+++..+.+ .++++|-+||+
T Consensus 25 ~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~g~------~p~~~~~aA~~~~~-~g~d~IdiN~G 97 (312)
T PRK10550 25 DYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLLGQ------YPQWLAENAARAVE-LGSWGVDLNCG 97 (312)
T ss_pred CCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEeccC------CHHHHHHHHHHHHH-cCCCEEEEeCC
Confidence 4899999988742111 111 11111 111247899888411 22334556666665 58999999997
Q ss_pred Ch-----------------hHHHHHHHHHHhhc--CCCEEEEeCCC
Q 025860 157 PP-----------------RFISGLILIIKKVT--AKPILIYPNSG 183 (247)
Q Consensus 157 ~p-----------------~~~~~~l~~l~~~~--~~pl~vyPNaG 183 (247)
+| +.+..+++.+++.. +.||.+.-..|
T Consensus 98 CP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g 143 (312)
T PRK10550 98 CPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLG 143 (312)
T ss_pred CCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECC
Confidence 64 33455566666655 48999987765
No 50
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=94.61 E-value=3.4 Score=37.45 Aligned_cols=171 Identities=18% Similarity=0.261 Sum_probs=101.6
Q ss_pred CeEEEEe--cCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCC-C
Q 025860 38 PILVAAS--VGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENI-K 114 (247)
Q Consensus 38 ~~~VaGs--iGP~g~~l~~g~eY~g~y~~~~s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~-~ 114 (247)
...|..+ +.||-..=++|--+.+.+ +.-++-.+.+.+|+-...++|+|++.==-|.+- .+.++.+++.+.+. +
T Consensus 116 ~l~iitDvcLceyT~HGHcGil~~~~~---V~ND~Tle~l~k~Avs~AeAGAdivAPSdMMDG-rV~aIR~aLd~ag~~~ 191 (330)
T COG0113 116 ELVVITDVCLCEYTDHGHCGILDDGGY---VDNDETLEILAKQAVSQAEAGADIVAPSDMMDG-RVGAIREALDEAGFID 191 (330)
T ss_pred CeEEEeeecccCCcCCCccccccCCCe---ecchHHHHHHHHHHHHHHHcCCCeecccccccc-hHHHHHHHHHHcCCCc
Confidence 3455544 556655444443332322 445666777787888888899999984444333 34566666666542 3
Q ss_pred CcEEEEEEEcC-------------------C--CcccCCCcHHHHHHHHHh--CCCCeEEEEcCCChhHHHHHHHHHHhh
Q 025860 115 IPAWFSFNSKD-------------------G--VNVVSGDSLLECASIAES--CKRVVSVGINCTPPRFISGLILIIKKV 171 (247)
Q Consensus 115 ~pv~is~~~~~-------------------~--~~l~~G~~~~~~~~~~~~--~~~~~avG~NC~~p~~~~~~l~~l~~~ 171 (247)
.|+ +|.+.+- + ..-.|=-...++++.+.. ..|+|.|-|-=.-|. +.++..+++.
T Consensus 192 v~I-MsYsaKyASafYGPFRdAa~Sap~~gdrktYQmDpaN~~EAlrE~~lD~~EGAD~lMVKPal~Y--LDIi~~vk~~ 268 (330)
T COG0113 192 VPI-MSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREIELDIEEGADILMVKPALPY--LDIIRRVKEE 268 (330)
T ss_pred cee-eehhHHHhhhccccHHHHhhcccccCCcceeccCCcCHHHHHHHHHhhHhcCCcEEEEcCCchH--HHHHHHHHHh
Confidence 443 3544320 0 011122233445554431 358998888766443 6788888888
Q ss_pred cCCCEEEEeCCCCc---ccccccccccCCCCChHHHHHHHHHHHHcCCeEE
Q 025860 172 TAKPILIYPNSGEF---YDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLV 219 (247)
Q Consensus 172 ~~~pl~vyPNaG~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iI 219 (247)
.+.|+.+|--+|+- .....+.|... ...+.+....++.+|+.+|
T Consensus 269 ~~lP~~AYqVSGEYaMikAAa~nGwide----~~~vlEsL~~~kRAGAd~I 315 (330)
T COG0113 269 FNLPVAAYQVSGEYAMIKAAAQNGWIDE----EKVVLESLTSIKRAGADLI 315 (330)
T ss_pred cCCCeEEEecchHHHHHHHHHHcCCcch----HHHHHHHHHHHHhcCCCEE
Confidence 99999999999962 22224568643 2345666777888888776
No 51
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=94.54 E-value=1.7 Score=39.56 Aligned_cols=116 Identities=17% Similarity=0.230 Sum_probs=72.1
Q ss_pred CC-CEEEEecCCCHHHHHH-HHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCCChh----
Q 025860 86 AP-DLIAFETIPNKIEAQA-YAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTPPR---- 159 (247)
Q Consensus 86 gv-D~i~~ET~~~~~E~~a-a~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~~p~---- 159 (247)
|+ |+.+=|.++.-.=... --+.+.....+.|+.+++.-. +.+.+.++++.+.+ .++++|-+||+.|.
T Consensus 24 g~~~~~~TEMv~a~~l~~~~~~~~l~~~~~e~p~~vQl~g~------~p~~~~~aA~~~~~-~g~d~IDlN~GCP~~~v~ 96 (318)
T TIGR00742 24 SKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLGGS------DPNDLAKCAKIAEK-RGYDEINLNVGCPSDRVQ 96 (318)
T ss_pred CCCCEEEeCCEEEhhhhccCHHHHcccCCCCCcEEEEEccC------CHHHHHHHHHHHHh-CCCCEEEEECCCCHHHhC
Confidence 55 8887777654310000 002233223468888888421 34556677777766 58999999997652
Q ss_pred -------------HHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEE
Q 025860 160 -------------FISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLV 219 (247)
Q Consensus 160 -------------~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iI 219 (247)
.+.++++.+++..+.|+.|.-..|.- . + .+.+...++++...+.|++.|
T Consensus 97 ~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~--~----~-----~~~~~~~~~~~~l~~~G~~~i 158 (318)
T TIGR00742 97 NGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGID--P----L-----DSYEFLCDFVEIVSGKGCQNF 158 (318)
T ss_pred CCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCC--C----c-----chHHHHHHHHHHHHHcCCCEE
Confidence 25677778887778999998877631 1 0 112445567777778898865
No 52
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.47 E-value=1.2 Score=41.95 Aligned_cols=66 Identities=9% Similarity=0.053 Sum_probs=44.9
Q ss_pred HHHHHHHhcCCCCEEEEec-CCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEE
Q 025860 76 RRRVQVLVESAPDLIAFET-IPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGI 153 (247)
Q Consensus 76 ~~q~~~l~~~gvD~i~~ET-~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~ 153 (247)
.++++.|+++|||+|++-+ -++-..+...++.+++..+++++++.. -.+.+++...+ + .|+|+|.+
T Consensus 155 ~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~----------V~T~e~a~~l~-~-aGaD~I~v 221 (404)
T PRK06843 155 IERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGN----------IVTKEAALDLI-S-VGADCLKV 221 (404)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEe----------cCCHHHHHHHH-H-cCCCEEEE
Confidence 3478889999999999885 344456666777777754467776544 33556666544 4 47888765
No 53
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=94.41 E-value=3.3 Score=36.67 Aligned_cols=157 Identities=18% Similarity=0.194 Sum_probs=84.9
Q ss_pred HHHHHHHhcCCCCEEEEecCC-----------------------CHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCC
Q 025860 76 RRRVQVLVESAPDLIAFETIP-----------------------NKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSG 132 (247)
Q Consensus 76 ~~q~~~l~~~gvD~i~~ET~~-----------------------~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G 132 (247)
.+.++.|.+.|||+|=+= +| ++++.-..++.+++...+.|+++...++ ... .
T Consensus 29 ~~~~~~l~~~Gad~iElG-iPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N--~i~--~ 103 (258)
T PRK13111 29 LEIIKALVEAGADIIELG-IPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYN--PIF--Q 103 (258)
T ss_pred HHHHHHHHHCCCCEEEEC-CCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEeccc--HHh--h
Confidence 336778888999998322 22 2223333444455333468876333232 222 2
Q ss_pred CcHHHHHHHHHhCCCCeEEEEcCCChhHHHHHHHHHHhhcCCCE-EEEeCCCC--c--cccccccccc---C------CC
Q 025860 133 DSLLECASIAESCKRVVSVGINCTPPRFISGLILIIKKVTAKPI-LIYPNSGE--F--YDADRKEWVQ---N------TG 198 (247)
Q Consensus 133 ~~~~~~~~~~~~~~~~~avG~NC~~p~~~~~~l~~l~~~~~~pl-~vyPNaG~--~--~d~~~~~~~~---~------~~ 198 (247)
-.+++.++.+.+ .|++++-++=-.++....+++..+++.=.++ ++-||.-. . .......|.. . ..
T Consensus 104 ~G~e~f~~~~~~-aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~ 182 (258)
T PRK13111 104 YGVERFAADAAE-AGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYVSRAGVTGARS 182 (258)
T ss_pred cCHHHHHHHHHH-cCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCccc
Confidence 245777887877 5899999986677888888887776532333 47777731 0 1111112211 0 00
Q ss_pred CChHHHHHHHHHHHHc-CCeEEeecCCCChHHHHHHHHHhh
Q 025860 199 VSDEDFVSYVSKWCEV-GASLVGGCCRTTPNTIKGIYRTLS 238 (247)
Q Consensus 199 ~~~~~~~~~~~~~~~~-G~~iIGGCCGt~P~hI~al~~~l~ 238 (247)
..+....+++++..+. +..++=|=.=.+|+|++.+.+..+
T Consensus 183 ~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~AD 223 (258)
T PRK13111 183 ADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAAVAD 223 (258)
T ss_pred CCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHhCC
Confidence 1122334444444432 444444444568999999886533
No 54
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=94.36 E-value=4.1 Score=37.38 Aligned_cols=155 Identities=15% Similarity=0.135 Sum_probs=86.9
Q ss_pred CcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEe---------------cCCCHHHHHHHHHHHHhhCCCC
Q 025860 51 YLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFE---------------TIPNKIEAQAYAELLEEENIKI 115 (247)
Q Consensus 51 ~l~~g~eY~g~y~~~~s~~e~~~~~~~q~~~l~~~gvD~i~~E---------------T~~~~~E~~aa~~~~~~~~~~~ 115 (247)
+|.||. |.... ..+.++..+ .++.|.++|||.|=+= .+++.+.++.+++.++ +.
T Consensus 9 TLRDG~-q~~~~--~f~~~~~~~----ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~----~~ 77 (333)
T TIGR03217 9 TLRDGM-HAIRH--QFTIEQVRA----IAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVK----RA 77 (333)
T ss_pred CCCCCC-cCCCC--cCCHHHHHH----HHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCC----CC
Confidence 456665 33333 257777777 6667788999988320 1233333333333322 22
Q ss_pred cEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeE--EEEcCCChhHHHHHHHHHHhhcCCCEEEEeCCCCccccccccc
Q 025860 116 PAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVS--VGINCTPPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEW 193 (247)
Q Consensus 116 pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~a--vG~NC~~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~ 193 (247)
.+.+ +..... | ...+ ++...+ .+++. |.+.|+..+.+.+.++..++. ...+.+.+=. . +
T Consensus 78 ~~~~-ll~pg~-----~-~~~d-l~~a~~-~gvd~iri~~~~~e~d~~~~~i~~ak~~-G~~v~~~l~~-----s----~ 138 (333)
T TIGR03217 78 KVAV-LLLPGI-----G-TVHD-LKAAYD-AGARTVRVATHCTEADVSEQHIGMAREL-GMDTVGFLMM-----S----H 138 (333)
T ss_pred EEEE-EeccCc-----c-CHHH-HHHHHH-CCCCEEEEEeccchHHHHHHHHHHHHHc-CCeEEEEEEc-----c----c
Confidence 3221 221111 1 1233 344444 35665 556777766777777776653 3333322211 0 1
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCeEEeecCC----CChHHHHHHHHHhhCC
Q 025860 194 VQNTGVSDEDFVSYVSKWCEVGASLVGGCCR----TTPNTIKGIYRTLSNR 240 (247)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~G~~iIGGCCG----t~P~hI~al~~~l~~~ 240 (247)
..+|+++.++++...+.|+..|. .|- .+|++++.+-+.++..
T Consensus 139 ----~~~~e~l~~~a~~~~~~Ga~~i~-i~DT~G~~~P~~v~~~v~~l~~~ 184 (333)
T TIGR03217 139 ----MTPPEKLAEQAKLMESYGADCVY-IVDSAGAMLPDDVRDRVRALKAV 184 (333)
T ss_pred ----CCCHHHHHHHHHHHHhcCCCEEE-EccCCCCCCHHHHHHHHHHHHHh
Confidence 14588999999999999999885 332 4899999988887643
No 55
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=94.36 E-value=1.1 Score=38.59 Aligned_cols=118 Identities=19% Similarity=0.175 Sum_probs=70.3
Q ss_pred HHHHHhcCCCCEEEEec-CCCHH------HHHHHHHHHHhhCCCCcEEEEEEEcCCCccc---CCCcHHHHHHHHHhCCC
Q 025860 78 RVQVLVESAPDLIAFET-IPNKI------EAQAYAELLEEENIKIPAWFSFNSKDGVNVV---SGDSLLECASIAESCKR 147 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET-~~~~~------E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~---~G~~~~~~~~~~~~~~~ 147 (247)
+++.+++.|+|.+.+.- +.+.. +++.+.+..++. ++|+++..... +..+. +.+.+..+++...+ .+
T Consensus 81 ~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~--g~~~iie~~~~-g~~~~~~~~~~~i~~~~~~a~~-~G 156 (235)
T cd00958 81 SVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKY--GLPLIAWMYPR-GPAVKNEKDPDLIAYAARIGAE-LG 156 (235)
T ss_pred CHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHc--CCCEEEEEecc-CCcccCccCHHHHHHHHHHHHH-HC
Confidence 56667789998775442 22322 555555555554 68988865432 22221 22344444554555 58
Q ss_pred CeEEEEcCC-ChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCe
Q 025860 148 VVSVGINCT-PPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGAS 217 (247)
Q Consensus 148 ~~avG~NC~-~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 217 (247)
+|.|+++.+ +++. ++.+.+....|+++- +|.. . .+++++.+.+++.++.|+.
T Consensus 157 aD~Ik~~~~~~~~~----~~~i~~~~~~pvv~~--GG~~----------~--~~~~~~l~~~~~~~~~Ga~ 209 (235)
T cd00958 157 ADIVKTKYTGDAES----FKEVVEGCPVPVVIA--GGPK----------K--DSEEEFLKMVYDAMEAGAA 209 (235)
T ss_pred CCEEEecCCCCHHH----HHHHHhcCCCCEEEe--CCCC----------C--CCHHHHHHHHHHHHHcCCc
Confidence 999999976 3444 444444556886443 2320 0 2467788888999999987
No 56
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=94.28 E-value=1.8 Score=41.57 Aligned_cols=99 Identities=12% Similarity=0.166 Sum_probs=68.4
Q ss_pred HHHHhcCCCCEE-EEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCC-
Q 025860 79 VQVLVESAPDLI-AFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT- 156 (247)
Q Consensus 79 ~~~l~~~gvD~i-~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~- 156 (247)
++...+.|+|+| +|-.+.+++-++.+++.+++.+...-+.++++..+.. +=+-+.+.++.+.+ .|++.|.|-=+
T Consensus 111 v~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~---t~~y~~~~a~~l~~-~Gad~I~IkDta 186 (468)
T PRK12581 111 ISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVH---TLNYYLSLVKELVE-MGADSICIKDMA 186 (468)
T ss_pred HHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcC---cHHHHHHHHHHHHH-cCCCEEEECCCC
Confidence 444567999998 5667788888888999999886323345555543311 11234566666666 58898877654
Q ss_pred ---ChhHHHHHHHHHHhhcCCCEEEEeC
Q 025860 157 ---PPRFISGLILIIKKVTAKPILIYPN 181 (247)
Q Consensus 157 ---~p~~~~~~l~~l~~~~~~pl~vyPN 181 (247)
.|..+..+++.+++..+.||.+.-.
T Consensus 187 G~l~P~~v~~Lv~alk~~~~~pi~~H~H 214 (468)
T PRK12581 187 GILTPKAAKELVSGIKAMTNLPLIVHTH 214 (468)
T ss_pred CCcCHHHHHHHHHHHHhccCCeEEEEeC
Confidence 3999999999998877788766554
No 57
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=94.27 E-value=1.9 Score=37.92 Aligned_cols=97 Identities=10% Similarity=0.028 Sum_probs=62.4
Q ss_pred HHHHHhcCCCCEEEEe-cCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCC
Q 025860 78 RVQVLVESAPDLIAFE-TIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT 156 (247)
Q Consensus 78 q~~~l~~~gvD~i~~E-T~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~ 156 (247)
-++...+.|+|.+-+- ..++..+++.+++.+++.+ ..+.+++. +.... +=+-+.+.++.+.+ .+++.|.+-=+
T Consensus 90 ~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G--~~v~~~~~--~~~~~-~~~~~~~~~~~~~~-~G~d~i~l~DT 163 (263)
T cd07943 90 DLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLG--MDVVGFLM--MSHMA-SPEELAEQAKLMES-YGADCVYVTDS 163 (263)
T ss_pred HHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCC--CeEEEEEE--eccCC-CHHHHHHHHHHHHH-cCCCEEEEcCC
Confidence 3555667899987543 4556677888888888764 44444442 22221 22334555666665 58888877433
Q ss_pred ----ChhHHHHHHHHHHhhcCC-CEEEEe
Q 025860 157 ----PPRFISGLILIIKKVTAK-PILIYP 180 (247)
Q Consensus 157 ----~p~~~~~~l~~l~~~~~~-pl~vyP 180 (247)
.|+.+..+++.+++..+. ||.+..
T Consensus 164 ~G~~~P~~v~~lv~~l~~~~~~~~l~~H~ 192 (263)
T cd07943 164 AGAMLPDDVRERVRALREALDPTPVGFHG 192 (263)
T ss_pred CCCcCHHHHHHHHHHHHHhCCCceEEEEe
Confidence 499999999999887665 765544
No 58
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=94.26 E-value=3.5 Score=36.69 Aligned_cols=113 Identities=19% Similarity=0.264 Sum_probs=68.0
Q ss_pred CCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCc
Q 025860 37 RPILVAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIP 116 (247)
Q Consensus 37 ~~~~VaGsiGP~g~~l~~g~eY~g~y~~~~s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~p 116 (247)
++.+|.+++ |++ .|. +.++ .++.-.+.+.++|+|.+=+|-- .|....++++.+. +.|
T Consensus 75 ~~~~vv~Dm-Pf~-----------sy~---~~e~---a~~na~rl~~eaGa~aVkiEgg---~~~~~~i~~l~~~--gIp 131 (263)
T TIGR00222 75 PNCLIVTDL-PFM-----------SYA---TPEQ---ALKNAARVMQETGANAVKLEGG---EWLVETVQMLTER--GVP 131 (263)
T ss_pred CCceEEeCC-CcC-----------CCC---CHHH---HHHHHHHHHHHhCCeEEEEcCc---HhHHHHHHHHHHC--CCC
Confidence 357888887 554 242 2333 3333445555699999999974 4444555677766 589
Q ss_pred EE-------EEEEEcCCCcccCCCcHHHHHHHHH-----hCCCCeEEEEcCCChhHHHHHHHHHHhhcCCCEE
Q 025860 117 AW-------FSFNSKDGVNVVSGDSLLECASIAE-----SCKRVVSVGINCTPPRFISGLILIIKKVTAKPIL 177 (247)
Q Consensus 117 v~-------is~~~~~~~~l~~G~~~~~~~~~~~-----~~~~~~avG~NC~~p~~~~~~l~~l~~~~~~pl~ 177 (247)
|+ .+.....+ ....|.+-+++-+.++ +..|+++|=+-|..++ +.+.+.+..+.|++
T Consensus 132 V~gHiGltPq~a~~~gg-y~~qgrt~~~a~~~i~~A~a~e~AGA~~ivlE~vp~~----~a~~It~~l~iP~i 199 (263)
T TIGR00222 132 VVGHLGLTPQSVNILGG-YKVQGKDEEAAKKLLEDALALEEAGAQLLVLECVPVE----LAAKITEALAIPVI 199 (263)
T ss_pred EEEecCCCceeEeecCC-eeecCCCHHHHHHHHHHHHHHHHcCCCEEEEcCCcHH----HHHHHHHhCCCCEE
Confidence 88 55544322 3334665444333222 1369999999999754 45555555678864
No 59
>PRK00865 glutamate racemase; Provisional
Probab=94.16 E-value=2.6 Score=37.20 Aligned_cols=152 Identities=16% Similarity=0.146 Sum_probs=80.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHH
Q 025860 60 GNYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECA 139 (247)
Q Consensus 60 g~y~~~~s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~ 139 (247)
.+|+. -|.+++.++-.+.++.|.+.|+|++++=..+.-. .+++.+++.. ++|++ | ++.++
T Consensus 42 ~PYG~-ks~~~i~~~~~~~~~~L~~~g~d~iVIaCNTa~~---~~l~~lr~~~-~iPvi-------------g--i~~a~ 101 (261)
T PRK00865 42 FPYGE-KSEEEIRERTLEIVEFLLEYGVKMLVIACNTASA---VALPDLRERY-DIPVV-------------G--IVPAI 101 (261)
T ss_pred CCCCC-CCHHHHHHHHHHHHHHHHhCCCCEEEEeCchHHH---HHHHHHHHhC-CCCEE-------------e--eHHHH
Confidence 35554 6889999999999999999999999987665221 2445566653 68887 2 23344
Q ss_pred HHHHhCCCCeEEEEcCCChh----HHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcC
Q 025860 140 SIAESCKRVVSVGINCTPPR----FISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVG 215 (247)
Q Consensus 140 ~~~~~~~~~~avG~NC~~p~----~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G 215 (247)
..+.....-.-||+=.+... ....+++... .+..+...|......-.... +.. .......+.+++..+.+.|
T Consensus 102 ~~a~~~~~~~~igVLaT~~Ti~s~~y~~~i~~~~--~~~~v~~~~~~~lv~~ie~g-~~~-~~~~~~~l~~~l~~l~~~g 177 (261)
T PRK00865 102 KPAAALTRNGRIGVLATPGTVKSAAYRDLIARFA--PDCQVESLACPELVPLVEAG-ILG-GPVTLEVLREYLAPLLAAG 177 (261)
T ss_pred HHHHHhcCCCeEEEEECHHHhhchHHHHHHHHhC--CCCEEEEecCHHHHHHHhCC-CcC-CHHHHHHHHHHHHHHhcCC
Confidence 33322123346777766432 2333333321 12335556766432111101 111 0111234666677776778
Q ss_pred CeEEeecCCCChHHHHHHHH
Q 025860 216 ASLVGGCCRTTPNTIKGIYR 235 (247)
Q Consensus 216 ~~iIGGCCGt~P~hI~al~~ 235 (247)
+..|=--|.--|--...|++
T Consensus 178 ~d~iILGCTh~p~l~~~i~~ 197 (261)
T PRK00865 178 IDTLVLGCTHYPLLKPEIQQ 197 (261)
T ss_pred CCEEEECCcCHHHHHHHHHH
Confidence 65543334333433333333
No 60
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=94.14 E-value=2.4 Score=42.02 Aligned_cols=99 Identities=16% Similarity=0.163 Sum_probs=68.6
Q ss_pred HHHHhcCCCCEE-EEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCC-
Q 025860 79 VQVLVESAPDLI-AFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT- 156 (247)
Q Consensus 79 ~~~l~~~gvD~i-~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~- 156 (247)
++...+.|+|.| +|-.++++.-++.+++++++.+...-..++++..... +=+-+.+.++.+.+ .+++.|.+-=+
T Consensus 103 v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~---~~~~~~~~a~~l~~-~Gad~i~i~Dt~ 178 (593)
T PRK14040 103 VERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTTSPVH---TLQTWVDLAKQLED-MGVDSLCIKDMA 178 (593)
T ss_pred HHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCcc---CHHHHHHHHHHHHH-cCCCEEEECCCC
Confidence 444567999977 6678888888999999999875222234555543321 12235566666666 58888877554
Q ss_pred ---ChhHHHHHHHHHHhhcCCCEEEEeC
Q 025860 157 ---PPRFISGLILIIKKVTAKPILIYPN 181 (247)
Q Consensus 157 ---~p~~~~~~l~~l~~~~~~pl~vyPN 181 (247)
.|..+..+++.+++..+.||.+.-.
T Consensus 179 G~l~P~~~~~lv~~lk~~~~~pi~~H~H 206 (593)
T PRK14040 179 GLLKPYAAYELVSRIKKRVDVPLHLHCH 206 (593)
T ss_pred CCcCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 3999999999999887888766553
No 61
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=94.08 E-value=3.2 Score=36.07 Aligned_cols=92 Identities=18% Similarity=0.216 Sum_probs=55.1
Q ss_pred HHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCCC-
Q 025860 79 VQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTP- 157 (247)
Q Consensus 79 ~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~~- 157 (247)
.+.+.+.|-.-|+.+- .++-.+..+..+++. +.|+.+++... +-+.+.++++.+.+ ..+.|-+||..
T Consensus 41 a~~~~~~~~~ef~~~~--~~~~~~~~~~~~~~~--~~p~~vqi~g~------~~~~~~~aa~~~~~--~~~~ielN~gCP 108 (233)
T cd02911 41 ARKLVKRGRKEFLPDD--PLEFIEGEIKALKDS--NVLVGVNVRSS------SLEPLLNAAALVAK--NAAILEINAHCR 108 (233)
T ss_pred HHHHHhcCCccccccc--hHHHHHHHHHHhhcc--CCeEEEEecCC------CHHHHHHHHHHHhh--cCCEEEEECCCC
Confidence 3345555654444333 233333444445554 57999888421 12344556665654 35999999974
Q ss_pred ----------------hhHHHHHHHHHHhhcCCCEEEEeCCC
Q 025860 158 ----------------PRFISGLILIIKKVTAKPILIYPNSG 183 (247)
Q Consensus 158 ----------------p~~~~~~l~~l~~~~~~pl~vyPNaG 183 (247)
|+.+..+++.+++ .+.|+.+.-..|
T Consensus 109 ~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g 149 (233)
T cd02911 109 QPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIRAG 149 (233)
T ss_pred cHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCC
Confidence 4555677777776 488998877665
No 62
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=94.06 E-value=1.5 Score=38.85 Aligned_cols=157 Identities=15% Similarity=0.164 Sum_probs=93.7
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCEE-----EEecCCC--HHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHH
Q 025860 67 TVETLKDFHRRRVQVLVESAPDLI-----AFETIPN--KIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECA 139 (247)
Q Consensus 67 s~~e~~~~~~~q~~~l~~~gvD~i-----~~ET~~~--~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~ 139 (247)
+.+.+.+|-+..++.+.+ -|.++ +||.... +.+++..++.+++. +.+|++-+-+.|- |.+....+
T Consensus 35 ~~~~~~~f~~~ii~~l~~-~v~~vK~g~~lf~~~G~~gi~~l~~~~~~~~~~--g~~VilD~K~~DI-----pnTv~~~a 106 (261)
T TIGR02127 35 SAAGLQAFCLRIIDATAE-YAAVVKPQVAFFERFGSEGFKALEEVIAHARSL--GLPVLADVKRGDI-----GSTASAYA 106 (261)
T ss_pred hHHHHHHHHHHHHHhcCC-cceEEecCHHHHHhcCHHHHHHHHHHHHHHHHC--CCeEEEEeeccCh-----HHHHHHHH
Confidence 456677888888887764 34444 5566543 45666666777775 5788887776553 44556666
Q ss_pred HHHHhCCCCeEEEEcCC-ChhHHHHHHHHHHhhcCCCEEE---EeCCC--CcccccccccccCCCCC-hHHHHHHHHHHH
Q 025860 140 SIAESCKRVVSVGINCT-PPRFISGLILIIKKVTAKPILI---YPNSG--EFYDADRKEWVQNTGVS-DEDFVSYVSKWC 212 (247)
Q Consensus 140 ~~~~~~~~~~avG~NC~-~p~~~~~~l~~l~~~~~~pl~v---yPNaG--~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~ 212 (247)
+.+....+++++-+|+. +.+.+.++++...+. +.-++| .-|.| .+.+.. . ....+ .+...+.++.|.
T Consensus 107 ~a~~~~~g~D~vTvh~~~G~d~l~~~~~~~~~~-~~~v~VlvlTSnp~~~~lq~~~----~-~~~~~~~~~V~~~a~~~~ 180 (261)
T TIGR02127 107 KAWLGHLHADALTVSPYLGLDSLRPFLEYARAN-GAGIFVLVKTSNPGGADLQDLR----V-SDGRTVYEEVAELAGELN 180 (261)
T ss_pred HHHHhhcCCCEEEECCcCCHHHHHHHHHHHhhc-CCEEEEEEeCCCCCHHHHhhhh----c-cCCCCHHHHHHHHHHHhc
Confidence 66652357999999997 777777787765432 222222 33433 122210 0 00001 234556666665
Q ss_pred Hc--CCeEEeecCC-CChHHHHHHHHHh
Q 025860 213 EV--GASLVGGCCR-TTPNTIKGIYRTL 237 (247)
Q Consensus 213 ~~--G~~iIGGCCG-t~P~hI~al~~~l 237 (247)
+. |....|--|| |.|+.++.|++.+
T Consensus 181 ~~~~~~g~~GvV~gAT~p~e~~~iR~~~ 208 (261)
T TIGR02127 181 ESPGDCSSVGAVVGATSPGDLLRLRIEM 208 (261)
T ss_pred cccCcCCceEEEECCCCHHHHHHHHHhC
Confidence 43 1234777676 5689999999876
No 63
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=93.92 E-value=5.1 Score=36.81 Aligned_cols=140 Identities=16% Similarity=0.200 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCEEEEecCC---------------C---HHHHHHHHHHHHhhCCCCcEEEEEEEcCC----
Q 025860 69 ETLKDFHRRRVQVLVESAPDLIAFETIP---------------N---KIEAQAYAELLEEENIKIPAWFSFNSKDG---- 126 (247)
Q Consensus 69 ~e~~~~~~~q~~~l~~~gvD~i~~ET~~---------------~---~~E~~aa~~~~~~~~~~~pv~is~~~~~~---- 126 (247)
++..++|+++++ .|+-+|+.|... + +...+.+.+++++. +.++++++.-...
T Consensus 37 ~~~~~~y~~rA~----gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~l~d~vh~~--G~~i~~QL~H~G~~~~~ 110 (337)
T PRK13523 37 NFHLIHYGTRAA----GQVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHKLVTFIHDH--GAKAAIQLAHAGRKAEL 110 (337)
T ss_pred HHHHHHHHHHHc----CCCeEEEECCeEECccccCCCCceecCCHHHHHHHHHHHHHHHhc--CCEEEEEccCCCCCCCC
Confidence 677788888775 688888888321 1 23444555666665 4567777643211
Q ss_pred ---------------CcccCCCcHH---H-------HHHHHHhCCCCeEEEEcCCC---------h--------------
Q 025860 127 ---------------VNVVSGDSLL---E-------CASIAESCKRVVSVGINCTP---------P-------------- 158 (247)
Q Consensus 127 ---------------~~l~~G~~~~---~-------~~~~~~~~~~~~avG~NC~~---------p-------------- 158 (247)
......-+.+ + +++.+.+ .|.|+|-|||.+ |
T Consensus 111 ~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~-aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGsle 189 (337)
T PRK13523 111 EGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKE-AGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPE 189 (337)
T ss_pred CCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHH
Confidence 0011112222 2 3333334 589999999983 3
Q ss_pred ---hHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEEeecCC
Q 025860 159 ---RFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCR 224 (247)
Q Consensus 159 ---~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iIGGCCG 224 (247)
..+.++++.+++..+.|+++.-|.... ... ..+++++.+.++.+.+.|+.+|==..|
T Consensus 190 nR~Rf~~eii~~ir~~~~~~v~vRis~~d~--------~~~-G~~~~e~~~i~~~l~~~gvD~i~vs~g 249 (337)
T PRK13523 190 NRYRFLREIIDAVKEVWDGPLFVRISASDY--------HPG-GLTVQDYVQYAKWMKEQGVDLIDVSSG 249 (337)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEeccccc--------CCC-CCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 234566777777777899988887421 111 245677778877777778776644343
No 64
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=93.91 E-value=0.74 Score=40.83 Aligned_cols=104 Identities=14% Similarity=0.182 Sum_probs=70.0
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEe-c-----CCCHHHHHHHHHHHHhh-CCCCcEEEEEEEcCCCcccCCCcHHHH
Q 025860 66 ITVETLKDFHRRRVQVLVESAPDLIAFE-T-----IPNKIEAQAYAELLEEE-NIKIPAWFSFNSKDGVNVVSGDSLLEC 138 (247)
Q Consensus 66 ~s~~e~~~~~~~q~~~l~~~gvD~i~~E-T-----~~~~~E~~aa~~~~~~~-~~~~pv~is~~~~~~~~l~~G~~~~~~ 138 (247)
++.+.+++ +++.+++.|||.+++= | .-+.+|-+.+++.+.+. ..++|+++.+ .+.+..++
T Consensus 18 iD~~~~~~----~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv---------~~~~~~~~ 84 (284)
T cd00950 18 VDFDALER----LIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGT---------GSNNTAEA 84 (284)
T ss_pred cCHHHHHH----HHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEecc---------CCccHHHH
Confidence 56555444 7888888999998754 3 34678888888876664 3357888777 34456666
Q ss_pred HHHHHh--CCCCeEEEEcCC-----ChhHHHHHHHHHHhhcCCCEEEEeCC
Q 025860 139 ASIAES--CKRVVSVGINCT-----PPRFISGLILIIKKVTAKPILIYPNS 182 (247)
Q Consensus 139 ~~~~~~--~~~~~avG~NC~-----~p~~~~~~l~~l~~~~~~pl~vyPNa 182 (247)
++.++. ..|+++|-+-=- +.+.+....+.+.+..+.|+++|-|.
T Consensus 85 ~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~P 135 (284)
T cd00950 85 IELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILYNVP 135 (284)
T ss_pred HHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEEECh
Confidence 665542 257776665431 23566677777777778999999764
No 65
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=93.87 E-value=1.7 Score=38.68 Aligned_cols=104 Identities=15% Similarity=0.167 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEe-c-----CCCHHHHHHHHHHHHhh-CCCCcEEEEEEEcCCCcccCCCcHHHH
Q 025860 66 ITVETLKDFHRRRVQVLVESAPDLIAFE-T-----IPNKIEAQAYAELLEEE-NIKIPAWFSFNSKDGVNVVSGDSLLEC 138 (247)
Q Consensus 66 ~s~~e~~~~~~~q~~~l~~~gvD~i~~E-T-----~~~~~E~~aa~~~~~~~-~~~~pv~is~~~~~~~~l~~G~~~~~~ 138 (247)
++.+.++ ..++.+++.|||.|++= | .-+.+|=+.+++.+.+. ..++|+++.+. +.+..++
T Consensus 19 iD~~~l~----~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~---------~~~~~~~ 85 (292)
T PRK03170 19 VDFAALR----KLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTG---------SNSTAEA 85 (292)
T ss_pred cCHHHHH----HHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecC---------CchHHHH
Confidence 5655544 48888888999998742 3 34577877788766653 33579887763 3455666
Q ss_pred HHHHHh--CCCCeEEEEcCC-----ChhHHHHHHHHHHhhcCCCEEEEeCC
Q 025860 139 ASIAES--CKRVVSVGINCT-----PPRFISGLILIIKKVTAKPILIYPNS 182 (247)
Q Consensus 139 ~~~~~~--~~~~~avG~NC~-----~p~~~~~~l~~l~~~~~~pl~vyPNa 182 (247)
++.++. ..|++++.+-=- +++.+....+.+.+..+.|+++|=+-
T Consensus 86 i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~P 136 (292)
T PRK03170 86 IELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILYNVP 136 (292)
T ss_pred HHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECc
Confidence 655432 257887776321 23567777777777788999999653
No 66
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=93.87 E-value=0.96 Score=41.45 Aligned_cols=93 Identities=12% Similarity=0.104 Sum_probs=62.0
Q ss_pred HHHHHHhcCCC--CEEEEe-cCCCHHHHHHHHHHHHhhCCCCcEEEE-EEEcCCCcccCCCcHHHHHHHHHhCCCCeEE-
Q 025860 77 RRVQVLVESAP--DLIAFE-TIPNKIEAQAYAELLEEENIKIPAWFS-FNSKDGVNVVSGDSLLECASIAESCKRVVSV- 151 (247)
Q Consensus 77 ~q~~~l~~~gv--D~i~~E-T~~~~~E~~aa~~~~~~~~~~~pv~is-~~~~~~~~l~~G~~~~~~~~~~~~~~~~~av- 151 (247)
+++..|+++|+ |+|.+- |.++...+..+++.+++..++.|+++. +. +.+++.. +.+ .|++++
T Consensus 100 ~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~-----------t~e~a~~-l~~-aGad~i~ 166 (326)
T PRK05458 100 DFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVG-----------TPEAVRE-LEN-AGADATK 166 (326)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecC-----------CHHHHHH-HHH-cCcCEEE
Confidence 57888999965 999996 666777777788888876546777763 32 5566655 444 478886
Q ss_pred -----EEcCCC--------hhHHHHHHHHHHhhcCCCEEEEeCCCC
Q 025860 152 -----GINCTP--------PRFISGLILIIKKVTAKPILIYPNSGE 184 (247)
Q Consensus 152 -----G~NC~~--------p~~~~~~l~~l~~~~~~pl~vyPNaG~ 184 (247)
|=||+. |.....++..+.+..+.|++ .++|.
T Consensus 167 vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVI--AdGGI 210 (326)
T PRK05458 167 VGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPII--ADGGI 210 (326)
T ss_pred ECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEE--EeCCC
Confidence 667742 22244557777666678855 45553
No 67
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=93.79 E-value=0.84 Score=39.70 Aligned_cols=98 Identities=8% Similarity=-0.059 Sum_probs=64.5
Q ss_pred HHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCc------ccCCCcHHHHHHHHHhCCCCeEE
Q 025860 78 RVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVN------VVSGDSLLECASIAESCKRVVSV 151 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~------l~~G~~~~~~~~~~~~~~~~~av 151 (247)
+++.+++.|+|-+++-|.. +.+...+-++.++++ +. +++|+...++.. -.++.++.+.++.+.+ .++..|
T Consensus 90 ~v~~~l~~Ga~kvvigt~a-~~~~~~l~~~~~~fg-~~-ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~-~g~~~i 165 (234)
T PRK13587 90 QIMDYFAAGINYCIVGTKG-IQDTDWLKEMAHTFP-GR-IYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSD-IPLGGI 165 (234)
T ss_pred HHHHHHHCCCCEEEECchH-hcCHHHHHHHHHHcC-CC-EEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHH-cCCCEE
Confidence 4555667899999987643 233334444555554 34 889999876521 1356788999999887 577888
Q ss_pred EEcCCChhHH-----HHHHHHHHhhcCCCEEEE
Q 025860 152 GINCTPPRFI-----SGLILIIKKVTAKPILIY 179 (247)
Q Consensus 152 G~NC~~p~~~-----~~~l~~l~~~~~~pl~vy 179 (247)
-++..+.+.+ ..+++.+.+..+.|+++.
T Consensus 166 i~tdi~~dGt~~G~~~~li~~l~~~~~ipvi~~ 198 (234)
T PRK13587 166 IYTDIAKDGKMSGPNFELTGQLVKATTIPVIAS 198 (234)
T ss_pred EEecccCcCCCCccCHHHHHHHHHhCCCCEEEe
Confidence 8888643221 557777777677886544
No 68
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=93.68 E-value=0.98 Score=41.26 Aligned_cols=76 Identities=16% Similarity=0.172 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCCC-h-----------hHHHHHH
Q 025860 98 KIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTP-P-----------RFISGLI 165 (247)
Q Consensus 98 ~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~~-p-----------~~~~~~l 165 (247)
+++....++.+++.. +.|+++++...+ -+.+.++++.+.+ .++++|=+|++. | +.+.+++
T Consensus 86 ~d~~~~~i~~~~~~~-~~pvi~sI~g~~------~~e~~~~a~~~~~-agad~ielN~scpp~~~~~~g~~~~~~~~eil 157 (334)
T PRK07565 86 PEEYLELIRRAKEAV-DIPVIASLNGSS------AGGWVDYARQIEQ-AGADALELNIYYLPTDPDISGAEVEQRYLDIL 157 (334)
T ss_pred HHHHHHHHHHHHHhc-CCcEEEEeccCC------HHHHHHHHHHHHH-cCCCEEEEeCCCCCCCCCCccccHHHHHHHHH
Confidence 444444444444433 689999994311 1233466666665 479999999643 1 2356777
Q ss_pred HHHHhhcCCCEEEEeC
Q 025860 166 LIIKKVTAKPILIYPN 181 (247)
Q Consensus 166 ~~l~~~~~~pl~vyPN 181 (247)
+.+++..++|++++-+
T Consensus 158 ~~v~~~~~iPV~vKl~ 173 (334)
T PRK07565 158 RAVKSAVSIPVAVKLS 173 (334)
T ss_pred HHHHhccCCcEEEEeC
Confidence 8888888899998853
No 69
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=93.67 E-value=0.9 Score=38.88 Aligned_cols=102 Identities=20% Similarity=0.125 Sum_probs=64.0
Q ss_pred HHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcc------cCCCcHHHHHHHHHhCCCCeE
Q 025860 77 RRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNV------VSGDSLLECASIAESCKRVVS 150 (247)
Q Consensus 77 ~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l------~~G~~~~~~~~~~~~~~~~~a 150 (247)
++++.+++.|+|.+++=|.. +.+...+.+++++.+ +.++++|+.++..... .+..++.+.++.+.+ .+++.
T Consensus 86 e~~~~~~~~Gad~vvigs~~-l~dp~~~~~i~~~~g-~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ga~~ 162 (234)
T cd04732 86 EDIERLLDLGVSRVIIGTAA-VKNPELVKELLKEYG-GERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEE-LGVKA 162 (234)
T ss_pred HHHHHHHHcCCCEEEECchH-HhChHHHHHHHHHcC-CceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHH-cCCCE
Confidence 35556667899999886654 455555666666664 4588999887654222 234567778887776 46777
Q ss_pred EEEcCCCh-----hHHHHHHHHHHhhcCCCEEEEeCCC
Q 025860 151 VGINCTPP-----RFISGLILIIKKVTAKPILIYPNSG 183 (247)
Q Consensus 151 vG~NC~~p-----~~~~~~l~~l~~~~~~pl~vyPNaG 183 (247)
+-+.-... ..-..+++.+.+..+.|+ +.|+|
T Consensus 163 iii~~~~~~g~~~g~~~~~i~~i~~~~~ipv--i~~GG 198 (234)
T cd04732 163 IIYTDISRDGTLSGPNFELYKELAAATGIPV--IASGG 198 (234)
T ss_pred EEEEeecCCCccCCCCHHHHHHHHHhcCCCE--EEecC
Confidence 66653211 112467777777778884 44555
No 70
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=93.55 E-value=5.3 Score=35.75 Aligned_cols=135 Identities=19% Similarity=0.176 Sum_probs=78.2
Q ss_pred HHHHHHHHHhcCC-CCEEEE------------ecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHH
Q 025860 74 FHRRRVQVLVESA-PDLIAF------------ETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECAS 140 (247)
Q Consensus 74 ~~~~q~~~l~~~g-vD~i~~------------ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~ 140 (247)
.|.+.++.+.++| +|.|=+ .-..+.+.+..+++.+++.. +.|+++-++. +-+.+.+.++
T Consensus 105 ~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~-------~~~~~~~~a~ 176 (301)
T PRK07259 105 EYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTP-------NVTDIVEIAK 176 (301)
T ss_pred HHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCC-------CchhHHHHHH
Confidence 3555666777788 998844 12234566777788888764 6898887752 1135566777
Q ss_pred HHHhCCCCeEEEE-cCC-Ch----h--------------------HHHHHHHHHHhhcCCCEEEEeCCCCcccccccccc
Q 025860 141 IAESCKRVVSVGI-NCT-PP----R--------------------FISGLILIIKKVTAKPILIYPNSGEFYDADRKEWV 194 (247)
Q Consensus 141 ~~~~~~~~~avG~-NC~-~p----~--------------------~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~ 194 (247)
.+.+ .++++|-+ |++ +. + .....+.++++..+.||+. |+|.
T Consensus 177 ~l~~-~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~--~GGI---------- 243 (301)
T PRK07259 177 AAEE-AGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIG--MGGI---------- 243 (301)
T ss_pred HHHH-cCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEE--ECCC----------
Confidence 6766 57887543 543 11 0 1234555555555666432 3332
Q ss_pred cCCCCChHHHHHHHHHHHHcCCeEEeecCCC--ChHHHHHHHHHh
Q 025860 195 QNTGVSDEDFVSYVSKWCEVGASLVGGCCRT--TPNTIKGIYRTL 237 (247)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~G~~iIGGCCGt--~P~hI~al~~~l 237 (247)
.++++..+ .+..|++.|.=|-+. +|.-++.+++.+
T Consensus 244 ----~~~~da~~----~l~aGAd~V~igr~ll~~P~~~~~i~~~l 280 (301)
T PRK07259 244 ----SSAEDAIE----FIMAGASAVQVGTANFYDPYAFPKIIEGL 280 (301)
T ss_pred ----CCHHHHHH----HHHcCCCceeEcHHHhcCcHHHHHHHHHH
Confidence 12433333 445677777755553 677777776655
No 71
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=93.52 E-value=3.6 Score=36.94 Aligned_cols=73 Identities=16% Similarity=0.174 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCCCEEEEecC---------------CCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHH
Q 025860 75 HRRRVQVLVESAPDLIAFETI---------------PNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECA 139 (247)
Q Consensus 75 ~~~q~~~l~~~gvD~i~~ET~---------------~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~ 139 (247)
|.+.++.+.+.|+|.|=+-.- .+.+.+..+++.+++.. ++|+++-++. +-+.+.+.+
T Consensus 115 ~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~Pv~vKl~~-------~~~~~~~~a 186 (299)
T cd02940 115 WTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAV-KIPVIAKLTP-------NITDIREIA 186 (299)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhc-CCCeEEECCC-------CchhHHHHH
Confidence 444666666678888855321 23456677788887653 6899987742 123567777
Q ss_pred HHHHhCCCCeEE-EEcCC
Q 025860 140 SIAESCKRVVSV-GINCT 156 (247)
Q Consensus 140 ~~~~~~~~~~av-G~NC~ 156 (247)
+.+.+ .++++| -+|..
T Consensus 187 ~~~~~-~Gadgi~~~Nt~ 203 (299)
T cd02940 187 RAAKE-GGADGVSAINTV 203 (299)
T ss_pred HHHHH-cCCCEEEEeccc
Confidence 77766 478765 44543
No 72
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=93.51 E-value=0.43 Score=43.98 Aligned_cols=131 Identities=21% Similarity=0.337 Sum_probs=77.1
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHH--HHh-----hCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCC
Q 025860 74 FHRRRVQVLVESAPDLIAFETIPNKIEAQAYAEL--LEE-----ENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCK 146 (247)
Q Consensus 74 ~~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~--~~~-----~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~ 146 (247)
.||..++ +. |+|++.=|.|- ++..+.- .+. ...+-|.+++|.-+ |=+.+.+|++.+.+
T Consensus 33 ~fR~L~R-~y--~~~l~yTpMi~----a~~fv~~ek~r~~~~st~~~D~PLIvQf~~n------dp~~ll~Aa~lv~~-- 97 (358)
T KOG2335|consen 33 AFRRLVR-LY--GADLLYTPMIH----AKTFVHSEKYRDSELSTSPEDRPLIVQFGGN------DPENLLKAARLVQP-- 97 (358)
T ss_pred HHHHHHH-Hh--CCceEechHHH----HHHHhcCccchhhhcccCCCCCceEEEEcCC------CHHHHHHHHHHhhh--
Confidence 3554444 33 78988755443 3333321 111 12368999999643 34566788876654
Q ss_pred CCeEEEEcCCCh-----------------hHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHH
Q 025860 147 RVVSVGINCTPP-----------------RFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVS 209 (247)
Q Consensus 147 ~~~avG~NC~~p-----------------~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~ 209 (247)
.+|+|++||+.| +.+.++++.++.....|+.+.---| .+.++=.++++
T Consensus 98 y~D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~---------------~d~~kTvd~ak 162 (358)
T KOG2335|consen 98 YCDGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIF---------------VDLEKTVDYAK 162 (358)
T ss_pred hcCcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEec---------------CcHHHHHHHHH
Confidence 469999999866 3445566666666777765554332 12445556777
Q ss_pred HHHHcCCeEE---eecC-----CCChHHHHHHH
Q 025860 210 KWCEVGASLV---GGCC-----RTTPNTIKGIY 234 (247)
Q Consensus 210 ~~~~~G~~iI---GGCC-----Gt~P~hI~al~ 234 (247)
...++|++++ |=.| .+.|.++.+|+
T Consensus 163 ~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~ 195 (358)
T KOG2335|consen 163 MLEDAGVSLLTVHGRTREQKGLKTGPADWEAIK 195 (358)
T ss_pred HHHhCCCcEEEEecccHHhcCCCCCCcCHHHHH
Confidence 7778888775 3222 25565555554
No 73
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=93.47 E-value=1.2 Score=43.13 Aligned_cols=81 Identities=12% Similarity=0.267 Sum_probs=52.9
Q ss_pred CCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEecCC-CHHHHHHHHHHHHhhCCC
Q 025860 36 HRPILVAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIP-NKIEAQAYAELLEEENIK 114 (247)
Q Consensus 36 ~~~~~VaGsiGP~g~~l~~g~eY~g~y~~~~s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~-~~~E~~aa~~~~~~~~~~ 114 (247)
..+.+|+++||+... ..++++.|+++|+|+|.+-+-. +-......++.+|+..++
T Consensus 234 ~~~l~vgaavg~~~~------------------------~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~ 289 (505)
T PLN02274 234 DGKLLVGAAIGTRES------------------------DKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPE 289 (505)
T ss_pred CCCEEEEEEEcCCcc------------------------HHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCC
Confidence 346788888987531 2358999999999999998732 222333667777775446
Q ss_pred CcEEEE-EEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEE
Q 025860 115 IPAWFS-FNSKDGVNVVSGDSLLECASIAESCKRVVSVGI 153 (247)
Q Consensus 115 ~pv~is-~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~ 153 (247)
.++++. + .+.+++...+ + .|+|+|.+
T Consensus 290 ~~vi~g~v-----------~t~e~a~~a~-~-aGaD~i~v 316 (505)
T PLN02274 290 LDVIGGNV-----------VTMYQAQNLI-Q-AGVDGLRV 316 (505)
T ss_pred CcEEEecC-----------CCHHHHHHHH-H-cCcCEEEE
Confidence 777642 2 2455565544 3 48888854
No 74
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=93.46 E-value=2.5 Score=37.40 Aligned_cols=113 Identities=19% Similarity=0.223 Sum_probs=68.3
Q ss_pred eEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEE
Q 025860 39 ILVAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAW 118 (247)
Q Consensus 39 ~~VaGsiGP~g~~l~~g~eY~g~y~~~~s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~ 118 (247)
.+|.+++ |||. |.. +.++..+. -++.+.++|++.+-+|-. .|....++++.+. +.||+
T Consensus 74 p~viaD~-~fg~-----------y~~--~~~~av~~---a~r~~~~aGa~aVkiEd~---~~~~~~I~al~~a--gipV~ 131 (254)
T cd06557 74 ALVVADM-PFGS-----------YQT--SPEQALRN---AARLMKEAGADAVKLEGG---AEVAETIRALVDA--GIPVM 131 (254)
T ss_pred CeEEEeC-CCCc-----------ccC--CHHHHHHH---HHHHHHHhCCeEEEEcCc---HHHHHHHHHHHHc--CCCee
Confidence 4566777 7763 432 55665442 233344599999999985 4667777777776 57888
Q ss_pred EEEEEcCC------CcccCCCc---HHHHHHHHHh--CCCCeEEEEcCCChhHHHHHHHHHHhhcCCCEE
Q 025860 119 FSFNSKDG------VNVVSGDS---LLECASIAES--CKRVVSVGINCTPPRFISGLILIIKKVTAKPIL 177 (247)
Q Consensus 119 is~~~~~~------~~l~~G~~---~~~~~~~~~~--~~~~~avG~NC~~p~~~~~~l~~l~~~~~~pl~ 177 (247)
--+-+... +....|-+ ..++++.++. ..|+++|=+-|... ++++.+.+..+.|++
T Consensus 132 gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v~~----~~~~~i~~~v~iP~i 197 (254)
T cd06557 132 GHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVLECVPA----ELAKEITEALSIPTI 197 (254)
T ss_pred ccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEEcCCCH----HHHHHHHHhCCCCEE
Confidence 44443322 12223333 3444443321 36999999999953 366666666678864
No 75
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=93.43 E-value=1.8 Score=38.94 Aligned_cols=160 Identities=17% Similarity=0.136 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEecCCCHHHH-----------H----HHHHHHHhhC----CCCcEEEEEEEcCCC
Q 025860 67 TVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEA-----------Q----AYAELLEEEN----IKIPAWFSFNSKDGV 127 (247)
Q Consensus 67 s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~-----------~----aa~~~~~~~~----~~~pv~is~~~~~~~ 127 (247)
.++.+++.|++-++ +|+|+|.=-|+..-.+. + .+++.+++.- ...+++|.-++-+-+
T Consensus 39 ~p~~v~~iH~~yl~----AGAdiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~VaGsiGP~g 114 (305)
T PF02574_consen 39 NPELVRQIHRDYLE----AGADIITTNTYQASRERLKEYGLSDEEAEELNRAAVELAREAADEYGSGRKVLVAGSIGPYG 114 (305)
T ss_dssp -HHHHHHHHHHHHH----HT-SEEEEC-TT-SHHHHGGGT-GGGCHHHHHHHHHHHHHHHHTT---TT-SEEEEEEE--S
T ss_pred CHHHHHHHHHHHHH----CCCCeEEecCCcCchhhhhhcCCcHHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccccc
Confidence 56888899987764 89999987777654321 1 2344444421 123566666654322
Q ss_pred --------cccCCCcHHHHH-------HHHHhCCCCeEEEEcCC-ChhHHHHHHHHHHhhcCCCE----EEEeCCCCccc
Q 025860 128 --------NVVSGDSLLECA-------SIAESCKRVVSVGINCT-PPRFISGLILIIKKVTAKPI----LIYPNSGEFYD 187 (247)
Q Consensus 128 --------~l~~G~~~~~~~-------~~~~~~~~~~avG~NC~-~p~~~~~~l~~l~~~~~~pl----~vyPNaG~~~d 187 (247)
.-..+.+.+++. +.+.+ .++|.+.+--. +...+..+++.+++..+.|+ .+..+. ...+
T Consensus 115 a~l~g~~y~~~~~~~~~~~~~~~~~q~~~l~~-~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~p~~is~~~~~~~-~l~~ 192 (305)
T PF02574_consen 115 AYLSGSEYPGDYGLSFEELRDFHREQAEALAD-AGVDLLLFETMPSLAEAKAALEAIKEVTGLPVWISFSCKDSG-RLRD 192 (305)
T ss_dssp --------CTTCTT-HHHHHHHHHHHHHHHHH-TT-SEEEEEEEC-CSCHHHHHHHHHHHHHCCSSEEE-EEEEE-S-TC
T ss_pred ccchhhhccccccccHHHHHHHHHHHHHHHHh-cCCCEEEEecCcHHHHHHHHHHHHHhhhhhhceeccchhhhc-cccC
Confidence 122344555443 33344 57999999975 45566667777766445562 233222 2222
Q ss_pred ccccccccCCCCChHHHHHHHHHHHHcCCeEEeecCCCChHHHHHHHHHhhC
Q 025860 188 ADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCRTTPNTIKGIYRTLSN 239 (247)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iIGGCCGt~P~hI~al~~~l~~ 239 (247)
++. .. ..-....+..... +.++..||=-|...|.+...|.+....
T Consensus 193 g~~--~~----~~~~~~~~~~~~~-~~~~~~iGvNC~~~~~~~~~l~~~~~~ 237 (305)
T PF02574_consen 193 GTS--LE----DAVQVIDELLRAL-PPGPDAIGVNCTSPPEIMKALLELMSA 237 (305)
T ss_dssp TTB--CT----TSHHHHHHHHHHH-CTT-SEEEEESSS-HHHHHHHHHHHHH
T ss_pred CCC--HH----HHHHHHHHHHHHh-hhhhheEEcCCCCcHHHHhHHHHHHhc
Confidence 210 00 1122222333333 679999999999999999999877653
No 76
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=93.41 E-value=4.9 Score=35.80 Aligned_cols=105 Identities=18% Similarity=0.154 Sum_probs=69.1
Q ss_pred CCHHHHHHHHHHHHHHHhcC-CCCEEEEe-c-----CCCHHHHHHHHHHHHhh-CCCCcEEEEEEEcCCCcccCCCcHHH
Q 025860 66 ITVETLKDFHRRRVQVLVES-APDLIAFE-T-----IPNKIEAQAYAELLEEE-NIKIPAWFSFNSKDGVNVVSGDSLLE 137 (247)
Q Consensus 66 ~s~~e~~~~~~~q~~~l~~~-gvD~i~~E-T-----~~~~~E~~aa~~~~~~~-~~~~pv~is~~~~~~~~l~~G~~~~~ 137 (247)
++.+. ++..++.+++. |||.|++- | .-+.+|-+.+++.+.+. ..++|+++.+. ..+..+
T Consensus 18 iD~~~----~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~---------~~~~~~ 84 (288)
T cd00954 18 INEDV----LRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVG---------SLNLKE 84 (288)
T ss_pred CCHHH----HHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccC---------CCCHHH
Confidence 55555 44478888889 99998654 2 22467777777766553 33578887772 345566
Q ss_pred HHHHHHh--CCCCeEEEEcCC-----ChhHHHHHHHHHHhhc-CCCEEEEeCCC
Q 025860 138 CASIAES--CKRVVSVGINCT-----PPRFISGLILIIKKVT-AKPILIYPNSG 183 (247)
Q Consensus 138 ~~~~~~~--~~~~~avG~NC~-----~p~~~~~~l~~l~~~~-~~pl~vyPNaG 183 (247)
+++..+. ..|++++-+--- +.+.+..-.+.+.+.. +.|+++|-|.+
T Consensus 85 ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P~ 138 (288)
T cd00954 85 SQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHIPA 138 (288)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCcc
Confidence 6654431 258888876542 2356677777777778 89999997653
No 77
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=93.41 E-value=1 Score=36.33 Aligned_cols=103 Identities=16% Similarity=0.108 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCHHH-HH----HHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCC
Q 025860 73 DFHRRRVQVLVESAPDLIAFETIPNKIE-AQ----AYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKR 147 (247)
Q Consensus 73 ~~~~~q~~~l~~~gvD~i~~ET~~~~~E-~~----aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~ 147 (247)
+.+.+.++.+.+.|+|++.+++...-.. .. ..++.+.+.. +.|+++++...+. +..+...+..+.. .+
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~a~~~~~-~g 84 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAET-DLPLGVQLAINDA-----AAAVDIAAAAARA-AG 84 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhc-CCcEEEEEccCCc-----hhhhhHHHHHHHH-cC
Confidence 3455577778889999999987552221 11 1133333332 6899999876442 2222222345555 58
Q ss_pred CeEEEEcCCCh---hHHHHHHHHHHhhc-CCCEEEEeCC
Q 025860 148 VVSVGINCTPP---RFISGLILIIKKVT-AKPILIYPNS 182 (247)
Q Consensus 148 ~~avG~NC~~p---~~~~~~l~~l~~~~-~~pl~vyPNa 182 (247)
+++|-+|+..+ +...+.++.+++.. +.|+++.-+.
T Consensus 85 ~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~ 123 (200)
T cd04722 85 ADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSP 123 (200)
T ss_pred CCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 89999998864 44667777777665 6777766654
No 78
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=93.34 E-value=1.3 Score=37.88 Aligned_cols=102 Identities=20% Similarity=0.117 Sum_probs=60.2
Q ss_pred HHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcc------cCCCcHHHHHHHHHhCCCCeE
Q 025860 77 RRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNV------VSGDSLLECASIAESCKRVVS 150 (247)
Q Consensus 77 ~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l------~~G~~~~~~~~~~~~~~~~~a 150 (247)
++++.+.+.|+|.+++=|.. +.+...+.+++++.+ ..++++|+.+..+... ..+.++.+.++.+.+ .+++.
T Consensus 85 ed~~~~~~~Ga~~vvlgs~~-l~d~~~~~~~~~~~g-~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~-~g~~~ 161 (230)
T TIGR00007 85 EDVEKLLDLGVDRVIIGTAA-VENPDLVKELLKEYG-PERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEE-LGLEG 161 (230)
T ss_pred HHHHHHHHcCCCEEEEChHH-hhCHHHHHHHHHHhC-CCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHh-CCCCE
Confidence 46666777999998876543 233455566667664 3578888887643211 123566778887776 46665
Q ss_pred EEEc---CCCh--hHHHHHHHHHHhhcCCCEEEEeCCC
Q 025860 151 VGIN---CTPP--RFISGLILIIKKVTAKPILIYPNSG 183 (247)
Q Consensus 151 vG~N---C~~p--~~~~~~l~~l~~~~~~pl~vyPNaG 183 (247)
+-+. ..+. ..-..+++.+.+..+.| +..++|
T Consensus 162 ii~~~~~~~g~~~g~~~~~i~~i~~~~~ip--via~GG 197 (230)
T TIGR00007 162 IIYTDISRDGTLSGPNFELTKELVKAVNVP--VIASGG 197 (230)
T ss_pred EEEEeecCCCCcCCCCHHHHHHHHHhCCCC--EEEeCC
Confidence 4433 3211 11145667776666777 455555
No 79
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=93.30 E-value=6.9 Score=36.41 Aligned_cols=116 Identities=17% Similarity=0.098 Sum_probs=63.3
Q ss_pred CCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEE-EEecCC-----CHHH-HHHHHHHHH
Q 025860 37 RPILVAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLI-AFETIP-----NKIE-AQAYAELLE 109 (247)
Q Consensus 37 ~~~~VaGsiGP~g~~l~~g~eY~g~y~~~~s~~e~~~~~~~q~~~l~~~gvD~i-~~ET~~-----~~~E-~~aa~~~~~ 109 (247)
.+.++...+=|.| ++.+++.+ ++..+..+|||+| --|.+. ..+| ++++.++++
T Consensus 125 ~rPl~~tiiKP~G----------------L~~~~~a~----~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~ 184 (364)
T cd08210 125 ERPLLCSALKPQG----------------LSAAELAE----LAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVA 184 (364)
T ss_pred CCceEEEEecccc----------------CCHHHHHH----HHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHH
Confidence 3456666676654 46666555 6666777999999 333332 2333 334445554
Q ss_pred hh----CCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCCChhHHHHHHHHHHhhcC-CCEEEEeCC
Q 025860 110 EE----NIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTPPRFISGLILIIKKVTA-KPILIYPNS 182 (247)
Q Consensus 110 ~~----~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~~p~~~~~~l~~l~~~~~-~pl~vyPNa 182 (247)
+. +..+++.+.+|- +.+.+.+-++.+.+ .|++++.+|-...- ...++.+++... .||..+|+.
T Consensus 185 ~a~~eTG~~~~y~~Nita-------~~~em~~ra~~a~~-~Ga~~vMv~~~~~G--~~~~~~l~~~~~~l~i~aHra~ 252 (364)
T cd08210 185 EANAETGGRTLYAPNVTG-------PPTQLLERARFAKE-AGAGGVLIAPGLTG--LDTFRELAEDFDFLPILAHPAF 252 (364)
T ss_pred HHHhhcCCcceEEEecCC-------CHHHHHHHHHHHHH-cCCCEEEeecccch--HHHHHHHHhcCCCcEEEEcccc
Confidence 43 334666666641 11122333444444 57888888874211 123444444556 777777775
No 80
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=93.24 E-value=1.1 Score=39.97 Aligned_cols=104 Identities=13% Similarity=0.151 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEe------cCCCHHHHHHHHHHHHh-hCCCCcEEEEEEEcCCCcccCCCcHHHH
Q 025860 66 ITVETLKDFHRRRVQVLVESAPDLIAFE------TIPNKIEAQAYAELLEE-ENIKIPAWFSFNSKDGVNVVSGDSLLEC 138 (247)
Q Consensus 66 ~s~~e~~~~~~~q~~~l~~~gvD~i~~E------T~~~~~E~~aa~~~~~~-~~~~~pv~is~~~~~~~~l~~G~~~~~~ 138 (247)
++.+.+. .+++.+++.|||.|++= ..-+.+|=+.+++.+.+ ...++||++.+. ..+..++
T Consensus 16 iD~~~~~----~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~---------~~s~~~~ 82 (285)
T TIGR00674 16 VDFAALE----KLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTG---------SNATEEA 82 (285)
T ss_pred cCHHHHH----HHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCC---------CccHHHH
Confidence 5665544 48888888999999863 23456777777776555 333589998773 3455666
Q ss_pred HHHHHh--CCCCeEEEEcCC-----ChhHHHHHHHHHHhhcCCCEEEEeCC
Q 025860 139 ASIAES--CKRVVSVGINCT-----PPRFISGLILIIKKVTAKPILIYPNS 182 (247)
Q Consensus 139 ~~~~~~--~~~~~avG~NC~-----~p~~~~~~l~~l~~~~~~pl~vyPNa 182 (247)
++..+. ..|++++-+==- +++.+....+.+.+..+.|+++|=|-
T Consensus 83 i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~P 133 (285)
T TIGR00674 83 ISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPIILYNVP 133 (285)
T ss_pred HHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECc
Confidence 555432 257887666421 24666777777777788999999664
No 81
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=93.21 E-value=2.9 Score=37.35 Aligned_cols=104 Identities=14% Similarity=0.117 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHHHHHhc-CCCCEEEEe-c-----CCCHHHHHHHHHHHHh-hCCCCcEEEEEEEcCCCcccCCCcHHH
Q 025860 66 ITVETLKDFHRRRVQVLVE-SAPDLIAFE-T-----IPNKIEAQAYAELLEE-ENIKIPAWFSFNSKDGVNVVSGDSLLE 137 (247)
Q Consensus 66 ~s~~e~~~~~~~q~~~l~~-~gvD~i~~E-T-----~~~~~E~~aa~~~~~~-~~~~~pv~is~~~~~~~~l~~G~~~~~ 137 (247)
++.+.+++ +++.+++ .|||.|++- | .-+.+|-+.+++.+.+ ...++|+++.+. ..+..+
T Consensus 21 iD~~~~~~----li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg---------~~~t~~ 87 (293)
T PRK04147 21 IDEQGLRR----LVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVG---------SVNTAE 87 (293)
T ss_pred cCHHHHHH----HHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCC---------CCCHHH
Confidence 56655444 8888888 999998653 2 2346777777776554 333578888762 345566
Q ss_pred HHHHHHh--CCCCeEEEEcCC-----ChhHHHHHHHHHHhhcCCCEEEEeCC
Q 025860 138 CASIAES--CKRVVSVGINCT-----PPRFISGLILIIKKVTAKPILIYPNS 182 (247)
Q Consensus 138 ~~~~~~~--~~~~~avG~NC~-----~p~~~~~~l~~l~~~~~~pl~vyPNa 182 (247)
+++..+. ..|++++-+--- ..+.+..-++.+.+..+.|+++|-|.
T Consensus 88 ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~P 139 (293)
T PRK04147 88 AQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMIVYNIP 139 (293)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 6554432 257888776542 13566666777777788999999654
No 82
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=93.19 E-value=5.8 Score=35.20 Aligned_cols=144 Identities=11% Similarity=0.099 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCEEEE-e---cCC----CHHHHHH-HHHHHHh----hC-CCCcEEEEEEEcCCCcccCCCc
Q 025860 69 ETLKDFHRRRVQVLVESAPDLIAF-E---TIP----NKIEAQA-YAELLEE----EN-IKIPAWFSFNSKDGVNVVSGDS 134 (247)
Q Consensus 69 ~e~~~~~~~q~~~l~~~gvD~i~~-E---T~~----~~~E~~a-a~~~~~~----~~-~~~pv~is~~~~~~~~l~~G~~ 134 (247)
+.+.+...+.++.+.++|+|+|.+ | +.. +.++.+. +...+++ .. .+.|+++-. | |..
T Consensus 140 ~~i~~~~~~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~~~~~~lH~-c--------g~~ 210 (306)
T cd00465 140 EYLTEFILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAGEVPIVHHS-C--------YDA 210 (306)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCceEEEE-C--------CCH
Confidence 556677888888999999997654 4 322 3334333 2333333 11 134555432 3 222
Q ss_pred HHHHHHHHHhCCCCeEEEEcCCChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHc
Q 025860 135 LLECASIAESCKRVVSVGINCTPPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEV 214 (247)
Q Consensus 135 ~~~~~~~~~~~~~~~avG~NC~~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (247)
...+..+.+ .+++++++-... ..+..+.+.+ +..+.+..|--.. ... -++++..+.+++.++.
T Consensus 211 -~~~~~~l~~-~~~d~~~~d~~~-~d~~~~~~~~----~~~~~i~Ggv~~~-------~~~---~~~e~i~~~v~~~l~~ 273 (306)
T cd00465 211 -ADLLEEMIQ-LGVDVISFDMTV-NEPKEAIEKV----GEKKTLVGGVDPG-------YLP---ATDEECIAKVEELVER 273 (306)
T ss_pred -HHHHHHHHH-hCcceEeccccc-CCHHHHHHHh----CCCEEEECCCCcc-------ccC---CCHHHHHHHHHHHHHH
Confidence 345556665 478888877653 2334444433 2234455554211 011 2467788888888876
Q ss_pred CC--eEEeecCCCC----h--HHHHHHHHHhh
Q 025860 215 GA--SLVGGCCRTT----P--NTIKGIYRTLS 238 (247)
Q Consensus 215 G~--~iIGGCCGt~----P--~hI~al~~~l~ 238 (247)
+. -|++--||.- + +.|++|.++++
T Consensus 274 ~~~~~il~~~cgi~~~~~~~~enl~a~v~a~~ 305 (306)
T cd00465 274 LGPHYIINPDCGLGPDSDYKPEHLRAVVQLVD 305 (306)
T ss_pred hCCCeEEeCCCCCCCCCCCcHHHHHHHHHHhh
Confidence 54 6788778744 3 89999988765
No 83
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=93.17 E-value=3.6 Score=37.68 Aligned_cols=116 Identities=18% Similarity=0.234 Sum_probs=70.0
Q ss_pred CC-CEEEEecCCCHHHHHH-HHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCCCh-----
Q 025860 86 AP-DLIAFETIPNKIEAQA-YAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTPP----- 158 (247)
Q Consensus 86 gv-D~i~~ET~~~~~E~~a-a~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~~p----- 158 (247)
|+ |+.+-|.+..-.=+.. ..+.+.....+.|+.+++.-. +-+.+.++++.+.+ .++++|-+||++|
T Consensus 34 g~~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~g~------~p~~~~~aA~~~~~-~g~d~IdlN~gCP~~~v~ 106 (333)
T PRK11815 34 SRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLGGS------DPADLAEAAKLAED-WGYDEINLNVGCPSDRVQ 106 (333)
T ss_pred CCCCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEeCC------CHHHHHHHHHHHHh-cCCCEEEEcCCCCHHHcc
Confidence 54 8888787654321111 112233333467999988421 23445566666665 5899999999755
Q ss_pred ------------hHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEE
Q 025860 159 ------------RFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLV 219 (247)
Q Consensus 159 ------------~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iI 219 (247)
+.+..+++.+++..+.||.+.--.|. +. . .+.++..++++.+.+.|+..|
T Consensus 107 ~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~--~~-------~--~t~~~~~~~~~~l~~aG~d~i 168 (333)
T PRK11815 107 NGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGI--DD-------Q--DSYEFLCDFVDTVAEAGCDTF 168 (333)
T ss_pred CCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeee--CC-------C--cCHHHHHHHHHHHHHhCCCEE
Confidence 33456777777777889888652221 11 0 123456677777888888776
No 84
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=93.16 E-value=2.6 Score=36.80 Aligned_cols=100 Identities=16% Similarity=0.080 Sum_probs=64.8
Q ss_pred HHHHHHhcCCCCEEEEecCC--------------CHHHHHHHHHHHHhhCCC-CcEEEEEEEcCCCcccCC-CcHHHHHH
Q 025860 77 RRVQVLVESAPDLIAFETIP--------------NKIEAQAYAELLEEENIK-IPAWFSFNSKDGVNVVSG-DSLLECAS 140 (247)
Q Consensus 77 ~q~~~l~~~gvD~i~~ET~~--------------~~~E~~aa~~~~~~~~~~-~pv~is~~~~~~~~l~~G-~~~~~~~~ 140 (247)
+.++.+.++||+.+.+|-.. +.+|...-++++++.-.+ .+++|-.-. +... .| ..++++++
T Consensus 88 ~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiART--Da~~-~~~~~~~eai~ 164 (243)
T cd00377 88 RTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIART--DALL-AGEEGLDEAIE 164 (243)
T ss_pred HHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEc--Cchh-ccCCCHHHHHH
Confidence 35777778999999998543 677877777777764322 234433322 1222 33 57888888
Q ss_pred HHHh--CCCCeEEEEcCC-ChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 025860 141 IAES--CKRVVSVGINCT-PPRFISGLILIIKKVTAKPILIYPNSG 183 (247)
Q Consensus 141 ~~~~--~~~~~avG~NC~-~p~~~~~~l~~l~~~~~~pl~vyPNaG 183 (247)
..+. ..|+|++-+-+. .++.+..+.+ ..+.|+.+|+..+
T Consensus 165 Ra~ay~~AGAD~v~v~~~~~~~~~~~~~~----~~~~Pl~~~~~~~ 206 (243)
T cd00377 165 RAKAYAEAGADGIFVEGLKDPEEIRAFAE----APDVPLNVNMTPG 206 (243)
T ss_pred HHHHHHHcCCCEEEeCCCCCHHHHHHHHh----cCCCCEEEEecCC
Confidence 7753 258898888765 5555555544 4689999997654
No 85
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=93.14 E-value=0.46 Score=43.06 Aligned_cols=132 Identities=19% Similarity=0.197 Sum_probs=71.5
Q ss_pred cCCCC-EEEEecCCCHHHHH---HHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCCCh-
Q 025860 84 ESAPD-LIAFETIPNKIEAQ---AYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTPP- 158 (247)
Q Consensus 84 ~~gvD-~i~~ET~~~~~E~~---aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~~p- 158 (247)
+.|++ +.+=|.++.-.-.. ...+.+.....+.|+++++.-. +.+.+.++++.+.+ .++++|-+||+.|
T Consensus 19 ~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~g~------~~~~~~~aa~~~~~-~~~~~IDlN~GCP~ 91 (309)
T PF01207_consen 19 EFGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLFGN------DPEDLAEAAEIVAE-LGFDGIDLNMGCPA 91 (309)
T ss_dssp CCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE-S-------HHHHHHHHHHHCC-TT-SEEEEEE---S
T ss_pred HHCCCeEEEcCCEEECcccccccceeecccccccccceeEEEeec------cHHHHHHHHHhhhc-cCCcEEeccCCCCH
Confidence 45666 77778766322111 1222333333346999999532 34566677776665 5899999999754
Q ss_pred ----------------hHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEEeec
Q 025860 159 ----------------RFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGC 222 (247)
Q Consensus 159 ----------------~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iIGGC 222 (247)
+.+..+|+.+++..+.|+.+.=-.|. . .+++++.++++.+.+.|++.|-==
T Consensus 92 ~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~---------~----~~~~~~~~~~~~l~~~G~~~i~vH 158 (309)
T PF01207_consen 92 PKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGW---------D----DSPEETIEFARILEDAGVSAITVH 158 (309)
T ss_dssp HHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESEC---------T------CHHHHHHHHHHHHTT--EEEEE
T ss_pred HHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEeccccc---------c----cchhHHHHHHHHhhhcccceEEEe
Confidence 55677888888888889877665442 1 124667788888888888777433
Q ss_pred CC------CChHHHHHHHH
Q 025860 223 CR------TTPNTIKGIYR 235 (247)
Q Consensus 223 CG------t~P~hI~al~~ 235 (247)
|. .+|.+...+++
T Consensus 159 ~Rt~~q~~~~~a~w~~i~~ 177 (309)
T PF01207_consen 159 GRTRKQRYKGPADWEAIAE 177 (309)
T ss_dssp CS-TTCCCTS---HHHHHH
T ss_pred cCchhhcCCcccchHHHHH
Confidence 32 22555555543
No 86
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=92.92 E-value=1.5 Score=43.00 Aligned_cols=106 Identities=12% Similarity=0.076 Sum_probs=74.2
Q ss_pred HHHHHHhcCCCCEEEEecCC--CHHH---------HHHHHHHHHhhCCCCcEEEEEEEcCC-------------------
Q 025860 77 RRVQVLVESAPDLIAFETIP--NKIE---------AQAYAELLEEENIKIPAWFSFNSKDG------------------- 126 (247)
Q Consensus 77 ~q~~~l~~~gvD~i~~ET~~--~~~E---------~~aa~~~~~~~~~~~pv~is~~~~~~------------------- 126 (247)
++++.++++|+|-+.+-|.- +.+| -..+-+++++++ +..+++|+..++.
T Consensus 338 e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg-~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~ 416 (538)
T PLN02617 338 EVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYG-NQAVVVSIDPRRVYVKDPSDVPFKTVKVTNPG 416 (538)
T ss_pred HHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcC-CceEEEEEecCcCcccCccccccccccccccC
Confidence 46777888999999998832 2222 245556677776 6779999987632
Q ss_pred ---------------CcccCCCcHHHHHHHHHhCCCCeEEEEcCCChhH-----HHHHHHHHHhhcCCCEEEEeCCCC
Q 025860 127 ---------------VNVVSGDSLLECASIAESCKRVVSVGINCTPPRF-----ISGLILIIKKVTAKPILIYPNSGE 184 (247)
Q Consensus 127 ---------------~~l~~G~~~~~~~~~~~~~~~~~avG~NC~~p~~-----~~~~l~~l~~~~~~pl~vyPNaG~ 184 (247)
++-..+.++.+.++.+.+ .++--|.+|+.+-+. =..+++.+.+..+.|+++.--+|.
T Consensus 417 ~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~-~Gageil~t~id~DGt~~G~d~~l~~~v~~~~~ipviasGG~g~ 493 (538)
T PLN02617 417 PNGEEYAWYQCTVKGGREGRPIGAYELAKAVEE-LGAGEILLNCIDCDGQGKGFDIELVKLVSDAVTIPVIASSGAGT 493 (538)
T ss_pred cCcccceEEEEEEecCcccCCCCHHHHHHHHHh-cCCCEEEEeeccccccccCcCHHHHHHHHhhCCCCEEEECCCCC
Confidence 111246678888988887 689999999974322 156778888888999887766654
No 87
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=92.91 E-value=6.8 Score=35.21 Aligned_cols=147 Identities=10% Similarity=0.162 Sum_probs=78.8
Q ss_pred CeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEe---------cCCCHHHHHH---HH
Q 025860 38 PILVAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFE---------TIPNKIEAQA---YA 105 (247)
Q Consensus 38 ~~~VaGsiGP~g~~l~~g~eY~g~y~~~~s~~e~~~~~~~q~~~l~~~gvD~i~~E---------T~~~~~E~~a---a~ 105 (247)
+..|.|-+-=+..++.||+.| .+.+.+.+ +++.+++.|+|+|=+- -++.-+|++- ++
T Consensus 14 ~~~imGIlNvTpDSFsdgg~~-------~~~~~a~~----~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI 82 (282)
T PRK11613 14 HPHVMGILNVTPDSFSDGGTH-------NSLIDAVK----HANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVV 82 (282)
T ss_pred CceEEEEEcCCCCCCCCCCCC-------CCHHHHHH----HHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 456888776666677776543 24566655 7777888999999655 2333346444 44
Q ss_pred HHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEE----EEcCCChhHHHHHHHHHHhhcCCCEEEEeC
Q 025860 106 ELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSV----GINCTPPRFISGLILIIKKVTAKPILIYPN 181 (247)
Q Consensus 106 ~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~av----G~NC~~p~~~~~~l~~l~~~~~~pl~vyPN 181 (247)
+.+++. ..+.+|+... . .++++...+ .|++.| |++ .| .|.+.+ ++ .+.|+++.++
T Consensus 83 ~~l~~~---~~~~ISIDT~---------~-~~va~~AL~-~GadiINDI~g~~--d~-~~~~~~---a~-~~~~vVlmh~ 141 (282)
T PRK11613 83 EAIAQR---FEVWISVDTS---------K-PEVIRESAK-AGAHIINDIRSLS--EP-GALEAA---AE-TGLPVCLMHM 141 (282)
T ss_pred HHHHhc---CCCeEEEECC---------C-HHHHHHHHH-cCCCEEEECCCCC--CH-HHHHHH---HH-cCCCEEEEcC
Confidence 555532 2345677432 1 334444444 367754 332 44 333333 22 3789999999
Q ss_pred CCCcccccc-cccccCCCCChHHHHHHHHHHHHcCC
Q 025860 182 SGEFYDADR-KEWVQNTGVSDEDFVSYVSKWCEVGA 216 (247)
Q Consensus 182 aG~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~ 216 (247)
.|.+.+... ..|..--..-...|.+.+..+.+.|+
T Consensus 142 ~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI 177 (282)
T PRK11613 142 QGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAGI 177 (282)
T ss_pred CCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcCC
Confidence 875432210 01100000001235566667778887
No 88
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=92.91 E-value=6.6 Score=35.87 Aligned_cols=67 Identities=10% Similarity=0.142 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCCCCEEEEec-CCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEE
Q 025860 75 HRRRVQVLVESAPDLIAFET-IPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGI 153 (247)
Q Consensus 75 ~~~q~~~l~~~gvD~i~~ET-~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~ 153 (247)
..++++.++++|+|+|.+-+ ..+.......++.+++..+++|+++ + +..+.+.+... .+ .++|+|-+
T Consensus 95 ~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~-------G---~v~t~~~A~~l-~~-aGaD~I~v 162 (325)
T cd00381 95 DKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIA-------G---NVVTAEAARDL-ID-AGADGVKV 162 (325)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEE-------C---CCCCHHHHHHH-Hh-cCCCEEEE
Confidence 35688899999999998875 3445566667777777643467665 1 23455666554 34 47888754
No 89
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=92.76 E-value=3 Score=36.66 Aligned_cols=101 Identities=15% Similarity=0.228 Sum_probs=66.3
Q ss_pred HHHHHHhcCC-CCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcC
Q 025860 77 RRVQVLVESA-PDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINC 155 (247)
Q Consensus 77 ~q~~~l~~~g-vD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC 155 (247)
+.++.+++.| +|++=+|--.....++.+++.+++. +.++++|+.-.+ .+++-+.+.+.++.+.. .++|.+=+-+
T Consensus 99 ~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~--~~kvI~S~H~f~--~tP~~~~l~~~~~~~~~-~gaDivKia~ 173 (253)
T PRK02412 99 ALIKAVIKSGLPDYIDVELFSGKDVVKEMVAFAHEH--GVKVVLSYHDFE--KTPPKEEIVERLRKMES-LGADIVKIAV 173 (253)
T ss_pred HHHHHHHhcCCCCEEEEeccCChHHHHHHHHHHHHc--CCEEEEeeCCCC--CCcCHHHHHHHHHHHHH-hCCCEEEEEe
Confidence 3445556677 8999999755555566666766664 578999996322 22333345666666665 5788887777
Q ss_pred C--ChhHHHHHHHHHHhh----cCCCEEEEeCC
Q 025860 156 T--PPRFISGLILIIKKV----TAKPILIYPNS 182 (247)
Q Consensus 156 ~--~p~~~~~~l~~l~~~----~~~pl~vyPNa 182 (247)
. ++.....+++..... .+.|++++.-+
T Consensus 174 ~a~~~~D~~~ll~~~~~~~~~~~~~P~i~~~MG 206 (253)
T PRK02412 174 MPQSEQDVLTLLNATREMKELYADQPLITMSMG 206 (253)
T ss_pred cCCCHHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Confidence 5 577777777655432 46898888754
No 90
>PRK15452 putative protease; Provisional
Probab=92.68 E-value=5 Score=38.35 Aligned_cols=127 Identities=11% Similarity=0.044 Sum_probs=73.2
Q ss_pred HHHHHhcCCCCEEEEe----------cCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHH---HHHHHh
Q 025860 78 RVQVLVESAPDLIAFE----------TIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLEC---ASIAES 144 (247)
Q Consensus 78 q~~~l~~~gvD~i~~E----------T~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~---~~~~~~ 144 (247)
++++.+++|+|.+.+. .-.+.+|++.+++.+++. ++.+++++.. +.....+..+ ++.+.+
T Consensus 15 ~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~--g~kvyvt~n~-----i~~e~el~~~~~~l~~l~~ 87 (443)
T PRK15452 15 NMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHAL--GKKFYVVVNI-----APHNAKLKTFIRDLEPVIA 87 (443)
T ss_pred HHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHc--CCEEEEEecC-----cCCHHHHHHHHHHHHHHHh
Confidence 6667788999999992 234568899999999887 5788887742 2222334333 444444
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHhh-cCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEEeecC
Q 025860 145 CKRVVSVGINCTPPRFISGLILIIKKV-TAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCC 223 (247)
Q Consensus 145 ~~~~~avG~NC~~p~~~~~~l~~l~~~-~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iIGGCC 223 (247)
.++|+|-+.--+ ++..+++. .+.|+.+-.+.. +... ..++-|.+.|+.-+=--.
T Consensus 88 -~gvDgvIV~d~G------~l~~~ke~~p~l~ih~stqln---------------i~N~---~a~~f~~~lG~~rvvLSr 142 (443)
T PRK15452 88 -MKPDALIMSDPG------LIMMVREHFPEMPIHLSVQAN---------------AVNW---ATVKFWQQMGLTRVILSR 142 (443)
T ss_pred -CCCCEEEEcCHH------HHHHHHHhCCCCeEEEEeccc---------------CCCH---HHHHHHHHCCCcEEEECC
Confidence 578988876532 33333332 244543322221 1111 222336666765444455
Q ss_pred CCChHHHHHHHHH
Q 025860 224 RTTPNTIKGIYRT 236 (247)
Q Consensus 224 Gt~P~hI~al~~~ 236 (247)
.-+-+.|+.|++.
T Consensus 143 ELsl~EI~~i~~~ 155 (443)
T PRK15452 143 ELSLEEIEEIRQQ 155 (443)
T ss_pred cCCHHHHHHHHhh
Confidence 6677777777643
No 91
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=92.66 E-value=0.86 Score=38.91 Aligned_cols=89 Identities=16% Similarity=0.157 Sum_probs=56.2
Q ss_pred HHHHHHHhcCCCCEEEEecC----CCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEE
Q 025860 76 RRRVQVLVESAPDLIAFETI----PNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSV 151 (247)
Q Consensus 76 ~~q~~~l~~~gvD~i~~ET~----~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~av 151 (247)
.++++.+.++|+|++++-.- |+..++..+++.+++. .+.|+++.. .+++++.. +.+ .+++.+
T Consensus 78 ~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~~v-----------~t~ee~~~-a~~-~G~d~i 143 (221)
T PRK01130 78 LKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMADC-----------STLEEGLA-AQK-LGFDFI 143 (221)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEEeC-----------CCHHHHHH-HHH-cCCCEE
Confidence 45778888899998876432 1226677778888873 357776533 25566644 444 589999
Q ss_pred EEcCC---C-----hhHHHHHHHHHHhhcCCCEEE
Q 025860 152 GINCT---P-----PRFISGLILIIKKVTAKPILI 178 (247)
Q Consensus 152 G~NC~---~-----p~~~~~~l~~l~~~~~~pl~v 178 (247)
++|-. . ......+++++++..+.|+++
T Consensus 144 ~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia 178 (221)
T PRK01130 144 GTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIA 178 (221)
T ss_pred EcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEE
Confidence 88631 1 112256777777777788654
No 92
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=92.62 E-value=8.3 Score=35.77 Aligned_cols=144 Identities=15% Similarity=0.116 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHhcCCCCEE-EEec------CCCHHHHH-----HHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHH
Q 025860 70 TLKDFHRRRVQVLVESAPDLI-AFET------IPNKIEAQ-----AYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLE 137 (247)
Q Consensus 70 e~~~~~~~q~~~l~~~gvD~i-~~ET------~~~~~E~~-----aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~ 137 (247)
.+.+.-..-++.++++|+|.| +|++ +.+.+|.. -+++.+++.+.+ +.++-|+ . |. ..
T Consensus 186 kltd~~i~Yl~~qi~aGAdavqifDsW~g~l~~~~~~~f~~~~~~~i~~~vk~~~~~-~pii~f~-~-------ga--~~ 254 (352)
T COG0407 186 KLTDAVIEYLKAQIEAGADAVQIFDSWAGVLSMIDYDEFVLPYMKRIVREVKEVKGG-VPVIHFC-K-------GA--GH 254 (352)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEeeccccccCCcccHHHHhhhHHHHHHHHHHHhCCC-CcEEEEC-C-------Cc--HH
Confidence 344555556667778999998 4445 12233322 233344444322 3344442 2 21 22
Q ss_pred HHHHHHhCCCCeEEEEcCCChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCe
Q 025860 138 CASIAESCKRVVSVGINCTPPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGAS 217 (247)
Q Consensus 138 ~~~~~~~~~~~~avG~NC~~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 217 (247)
.+..+.+ .+++++|+-+.-+ ++..++.....+.++-|--.. .+. .+++...+.+++.++.|..
T Consensus 255 ~l~~m~~-~g~d~l~vdw~v~------l~~a~~~~~~~~~lqGNldP~-------lL~---~~~~~i~~~~~~iL~~~~~ 317 (352)
T COG0407 255 LLEDMAK-TGFDVLGVDWRVD------LKEAKKRLGDKVALQGNLDPA-------LLY---APPEAIKEEVKRILEDGGD 317 (352)
T ss_pred HHHHHHh-cCCcEEeeccccC------HHHHHHHhCCCceEEeccChH-------hhc---CCHHHHHHHHHHHHHHhcc
Confidence 3444555 4799999999733 222222222337788877431 111 2367788888899887776
Q ss_pred E----EeecCC----CChHHHHHHHHHhhCCC
Q 025860 218 L----VGGCCR----TTPNTIKGIYRTLSNRS 241 (247)
Q Consensus 218 i----IGGCCG----t~P~hI~al~~~l~~~~ 241 (247)
. +==-|| |-|+++++|-+.+++..
T Consensus 318 ~~~~IfnlGhGI~P~tp~e~v~~lve~v~~~~ 349 (352)
T COG0407 318 GSGYIFNLGHGILPETPPENVKALVEAVHEYS 349 (352)
T ss_pred CCCceecCCCCcCCCCCHHHHHHHHHHHHHhc
Confidence 5 222366 67899999998887643
No 93
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=92.60 E-value=4.4 Score=34.18 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=15.4
Q ss_pred HHHHHHHHhcCCCCEEEE
Q 025860 75 HRRRVQVLVESAPDLIAF 92 (247)
Q Consensus 75 ~~~q~~~l~~~gvD~i~~ 92 (247)
+.+.++.+.++|+|+|=+
T Consensus 18 ~~~~~~~~~~~G~~~i~l 35 (220)
T PRK05581 18 LGEEVKAVEAAGADWIHV 35 (220)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 455888899999999988
No 94
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=92.57 E-value=3.1 Score=37.30 Aligned_cols=104 Identities=14% Similarity=0.070 Sum_probs=66.4
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEe-c-----CCCHHHHHHHHHHHHh-hCCCCcEEEEEEEcCCCcccCCCcHHHH
Q 025860 66 ITVETLKDFHRRRVQVLVESAPDLIAFE-T-----IPNKIEAQAYAELLEE-ENIKIPAWFSFNSKDGVNVVSGDSLLEC 138 (247)
Q Consensus 66 ~s~~e~~~~~~~q~~~l~~~gvD~i~~E-T-----~~~~~E~~aa~~~~~~-~~~~~pv~is~~~~~~~~l~~G~~~~~~ 138 (247)
++.+.+.+ +++.+++.|||.|++= | .-+.+|=+.+++.+.+ ...+.||++.+. +.+..++
T Consensus 18 iD~~~l~~----lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~---------~~~t~~a 84 (294)
T TIGR02313 18 IDEEALRE----LIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTG---------ALNHDET 84 (294)
T ss_pred cCHHHHHH----HHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECC---------cchHHHH
Confidence 56666554 7888888999988642 2 2246676777775443 333689997773 3455666
Q ss_pred HHHHHh--CCCCeEEEEcCC-----ChhHHHHHHHHHHhhc-CCCEEEEeCC
Q 025860 139 ASIAES--CKRVVSVGINCT-----PPRFISGLILIIKKVT-AKPILIYPNS 182 (247)
Q Consensus 139 ~~~~~~--~~~~~avG~NC~-----~p~~~~~~l~~l~~~~-~~pl~vyPNa 182 (247)
++..+. ..|++++.+-=- +.+.+..-.+.+.+.+ +.|+++|=|-
T Consensus 85 i~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P 136 (294)
T TIGR02313 85 LELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNIP 136 (294)
T ss_pred HHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 554432 257776655331 2356667777777778 8999999554
No 95
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=92.43 E-value=3.6 Score=36.60 Aligned_cols=114 Identities=19% Similarity=0.229 Sum_probs=65.7
Q ss_pred eEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEE
Q 025860 39 ILVAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAW 118 (247)
Q Consensus 39 ~~VaGsiGP~g~~l~~g~eY~g~y~~~~s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~ 118 (247)
.+|.+++ ||| .|.. +.++..+ .-++.+.++|++.+-+|-. .|....++++.+. +.||+
T Consensus 77 p~vvaD~-pfg-----------~y~~--~~~~av~---~a~r~~~~aGa~aVkiEdg---~~~~~~I~al~~a--gIpV~ 134 (264)
T PRK00311 77 ALVVADM-PFG-----------SYQA--SPEQALR---NAGRLMKEAGAHAVKLEGG---EEVAETIKRLVER--GIPVM 134 (264)
T ss_pred CcEEEeC-CCC-----------CccC--CHHHHHH---HHHHHHHHhCCeEEEEcCc---HHHHHHHHHHHHC--CCCEe
Confidence 3566777 775 3432 4454333 2334444599999999985 4555666667765 58887
Q ss_pred EEEEEcC------CCcccCCCc---HHHHHHHHHh--CCCCeEEEEcCCChhHHHHHHHHHHhhcCCCEEE
Q 025860 119 FSFNSKD------GVNVVSGDS---LLECASIAES--CKRVVSVGINCTPPRFISGLILIIKKVTAKPILI 178 (247)
Q Consensus 119 is~~~~~------~~~l~~G~~---~~~~~~~~~~--~~~~~avG~NC~~p~~~~~~l~~l~~~~~~pl~v 178 (247)
--+=+.. .+...-|.+ ..++++..+. ..|+++|=+-|...+ +.+.+.+..+.|++-
T Consensus 135 gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAGA~~i~lE~v~~~----~~~~i~~~l~iP~ig 201 (264)
T PRK00311 135 GHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAGAFALVLECVPAE----LAKEITEALSIPTIG 201 (264)
T ss_pred eeecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHCCCCEEEEcCCCHH----HHHHHHHhCCCCEEE
Confidence 3332221 122223433 3344433321 369999999999543 555565566788643
No 96
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=92.42 E-value=7.4 Score=34.45 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=32.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEecCCCH
Q 025860 60 GNYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNK 98 (247)
Q Consensus 60 g~y~~~~s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~ 98 (247)
+.|.. +.+++.++-.+-++.|.++|+|.+++|.+.+.
T Consensus 18 p~~~~--~~~~iie~A~~ea~~l~~~GvDgiiveN~~D~ 54 (254)
T PF03437_consen 18 PRYDG--SMEEIIERAVREAEALEEGGVDGIIVENMGDV 54 (254)
T ss_pred CCCCC--CHHHHHHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence 34543 78999999999999999999999999998866
No 97
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=92.12 E-value=8 Score=34.21 Aligned_cols=156 Identities=17% Similarity=0.096 Sum_probs=86.4
Q ss_pred CcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEecCCCH--------------HHHHHHHHHHHhhCCCCc
Q 025860 51 YLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNK--------------IEAQAYAELLEEENIKIP 116 (247)
Q Consensus 51 ~l~~g~eY~g~y~~~~s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~--------------~E~~aa~~~~~~~~~~~p 116 (247)
+|.||. |...+. .+.++..+ .++.|.++|||.|=+ .++.. +.++.+.+..+ .+.+
T Consensus 5 TLRDG~-q~~~~~--f~~~~~~~----ia~~L~~~GVd~IEv-G~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~ 73 (266)
T cd07944 5 TLRDGG-YVNNWD--FGDEFVKA----IYRALAAAGIDYVEI-GYRSSPEKEFKGKSAFCDDEFLRRLLGDSK---GNTK 73 (266)
T ss_pred CcccCc-cccCcc--CCHHHHHH----HHHHHHHCCCCEEEe-ecCCCCccccCCCccCCCHHHHHHHHhhhc---cCCE
Confidence 466765 445543 47777766 566677899999832 23332 22233332221 1233
Q ss_pred EEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcC--CChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccc
Q 025860 117 AWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINC--TPPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWV 194 (247)
Q Consensus 117 v~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC--~~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~ 194 (247)
+. .|. .... ..+. .+....+ .+++.|-+.+ ...+.+.+.++..++. ...+.+.+ - +.
T Consensus 74 ~~-~~~-~~~~-----~~~~-~l~~a~~-~gv~~iri~~~~~~~~~~~~~i~~ak~~-G~~v~~~~--~---~a------ 132 (266)
T cd07944 74 IA-VMV-DYGN-----DDID-LLEPASG-SVVDMIRVAFHKHEFDEALPLIKAIKEK-GYEVFFNL--M---AI------ 132 (266)
T ss_pred EE-EEE-CCCC-----CCHH-HHHHHhc-CCcCEEEEecccccHHHHHHHHHHHHHC-CCeEEEEE--E---ee------
Confidence 33 222 1110 1233 3333334 4678766665 3566666777766543 33333322 1 11
Q ss_pred cCCCCChHHHHHHHHHHHHcCCeEEeec--CC-CChHHHHHHHHHhhCC
Q 025860 195 QNTGVSDEDFVSYVSKWCEVGASLVGGC--CR-TTPNTIKGIYRTLSNR 240 (247)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~G~~iIGGC--CG-t~P~hI~al~~~l~~~ 240 (247)
.. .+++.+.+.+++..+.|+..|.=| .| .+|+++..+-+.+++.
T Consensus 133 ~~--~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~ 179 (266)
T cd07944 133 SG--YSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSN 179 (266)
T ss_pred cC--CCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 01 357889999999999998887532 33 4899999988887654
No 98
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=92.10 E-value=9.8 Score=35.16 Aligned_cols=138 Identities=14% Similarity=0.091 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEecCC----CHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHh-C
Q 025860 71 LKDFHRRRVQVLVESAPDLIAFETIP----NKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAES-C 145 (247)
Q Consensus 71 ~~~~~~~q~~~l~~~gvD~i~~ET~~----~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~-~ 145 (247)
-.+.-.+.+++..+.|+.+-+=. ++ +. |.+...+.+|+..++.|+++++-+... .|.+.+++.+.+.. .
T Consensus 75 ~~~in~~La~~a~~~G~~~~~Gs-~~~~~~~~-~~~~~~~~vr~~~p~~p~~aNl~~~~~----~~~~~~~~~~~~~~~~ 148 (352)
T PRK05437 75 AKEINRKLAEAAEELGIAMGVGS-QRAALKDP-ELADSFSVVRKVAPDGLLFANLGAVQL----YGYGVEEAQRAVEMIE 148 (352)
T ss_pred HHHHHHHHHHHHHHcCCCeEecc-cHhhccCh-hhHHHHHHHHHHCCCceEEeecCcccc----CCCCHHHHHHHHHhcC
Confidence 34445667777777887665422 22 22 366677778887668999999976432 25555555444432 1
Q ss_pred CCCeEEEEcCC----Ch------hHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcC
Q 025860 146 KRVVSVGINCT----PP------RFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVG 215 (247)
Q Consensus 146 ~~~~avG~NC~----~p------~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G 215 (247)
..+..|++||. .| +.+...++.+++..+.|+++.-+++. .++ +.++.+.+.|
T Consensus 149 adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g--------------~s~----~~a~~l~~~G 210 (352)
T PRK05437 149 ADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEVGFG--------------ISK----ETAKRLADAG 210 (352)
T ss_pred CCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeCCCC--------------CcH----HHHHHHHHcC
Confidence 34567888883 12 22346677777777899998865310 122 4556677788
Q ss_pred CeE--EeecCCCChHHHHH
Q 025860 216 ASL--VGGCCRTTPNTIKG 232 (247)
Q Consensus 216 ~~i--IGGCCGt~P~hI~a 232 (247)
+.. |+|-+||+-..|..
T Consensus 211 vd~I~Vsg~GGt~~~~ie~ 229 (352)
T PRK05437 211 VKAIDVAGAGGTSWAAIEN 229 (352)
T ss_pred CCEEEECCCCCCCccchhh
Confidence 776 67777776544443
No 99
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=92.02 E-value=2.2 Score=38.38 Aligned_cols=61 Identities=8% Similarity=0.079 Sum_probs=42.2
Q ss_pred CCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCC--CCeEEEEcCCC------------hhHHHHHHHHHHhhcCCCEEEE
Q 025860 114 KIPAWFSFNSKDGVNVVSGDSLLECASIAESCK--RVVSVGINCTP------------PRFISGLILIIKKVTAKPILIY 179 (247)
Q Consensus 114 ~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~--~~~avG~NC~~------------p~~~~~~l~~l~~~~~~pl~vy 179 (247)
+.|+++|+... -+.+.+.++.+.+.. ++++|=+|+++ |+.+.++++.+++..++|+++.
T Consensus 91 ~~pvivsi~g~-------~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~~iPv~vK 163 (294)
T cd04741 91 AKPFFISVTGS-------AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYSIPVGVK 163 (294)
T ss_pred CCeEEEECCCC-------HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 58999998421 123344455454422 58999999974 5667888888888888999887
Q ss_pred eC
Q 025860 180 PN 181 (247)
Q Consensus 180 PN 181 (247)
--
T Consensus 164 l~ 165 (294)
T cd04741 164 TP 165 (294)
T ss_pred eC
Confidence 63
No 100
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=91.85 E-value=2 Score=39.35 Aligned_cols=80 Identities=18% Similarity=0.226 Sum_probs=62.1
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcC-----------------CCcccCCCcHHH
Q 025860 75 HRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKD-----------------GVNVVSGDSLLE 137 (247)
Q Consensus 75 ~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~-----------------~~~l~~G~~~~~ 137 (247)
--.|+..|.++|+|++= =|+|+.+.+.+.-+..++. ++|++.-|.|+. .|..-.++-+.+
T Consensus 38 Tv~QI~~L~~aG~dIVR-vtv~~~e~A~A~~~Ik~~~--~vPLVaDiHf~~rla~~~~~~g~~k~RINPGNig~~~~v~~ 114 (361)
T COG0821 38 TVAQIKALERAGCDIVR-VTVPDMEAAEALKEIKQRL--NVPLVADIHFDYRLALEAAECGVDKVRINPGNIGFKDRVRE 114 (361)
T ss_pred HHHHHHHHHHcCCCEEE-EecCCHHHHHHHHHHHHhC--CCCEEEEeeccHHHHHHhhhcCcceEEECCcccCcHHHHHH
Confidence 44599999999999886 4899999988877766655 799999999872 123334466888
Q ss_pred HHHHHHhCCCCeEEEEcCCC
Q 025860 138 CASIAESCKRVVSVGINCTP 157 (247)
Q Consensus 138 ~~~~~~~~~~~~avG~NC~~ 157 (247)
+++.+.+..-+.=||+|-.+
T Consensus 115 vVe~Ak~~g~piRIGVN~GS 134 (361)
T COG0821 115 VVEAAKDKGIPIRIGVNAGS 134 (361)
T ss_pred HHHHHHHcCCCEEEecccCc
Confidence 88888776667889999976
No 101
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=91.83 E-value=2.1 Score=36.67 Aligned_cols=104 Identities=13% Similarity=0.101 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEE
Q 025860 73 DFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVG 152 (247)
Q Consensus 73 ~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG 152 (247)
+.|.+.++.+++.|+|++=+|--...+..+. ....+.. +.++++|+.-.+ .+++-..+.+.++.+.. .+++.+=
T Consensus 75 ~~~~~ll~~~~~~~~d~iDiE~~~~~~~~~~-~~~~~~~--~~~iI~S~H~f~--~tp~~~~l~~~~~~~~~-~gadivK 148 (224)
T PF01487_consen 75 EEYLELLERAIRLGPDYIDIELDLFPDDLKS-RLAARKG--GTKIILSYHDFE--KTPSWEELIELLEEMQE-LGADIVK 148 (224)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEGGCCHHHHHH-HHHHHHT--TSEEEEEEEESS-----THHHHHHHHHHHHH-TT-SEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEcccchhHHHH-HHHHhhC--CCeEEEEeccCC--CCCCHHHHHHHHHHHHh-cCCCeEE
Confidence 3345566666777899999998643333333 3333433 689999998322 22333346677777776 5888887
Q ss_pred EcCC--ChhHHHHHHHHHHhhc---CCCEEEEeCC
Q 025860 153 INCT--PPRFISGLILIIKKVT---AKPILIYPNS 182 (247)
Q Consensus 153 ~NC~--~p~~~~~~l~~l~~~~---~~pl~vyPNa 182 (247)
+-+. +++....+++...... +.|+++++-+
T Consensus 149 ia~~~~~~~D~~~l~~~~~~~~~~~~~p~i~~~MG 183 (224)
T PF01487_consen 149 IAVMANSPEDVLRLLRFTKEFREEPDIPVIAISMG 183 (224)
T ss_dssp EEEE-SSHHHHHHHHHHHHHHHHHTSSEEEEEEET
T ss_pred EEeccCCHHHHHHHHHHHHHHhhccCCcEEEEEcC
Confidence 7774 5777777776655543 7899888765
No 102
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=91.83 E-value=2.5 Score=39.80 Aligned_cols=105 Identities=14% Similarity=0.147 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCEE-EEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCC
Q 025860 69 ETLKDFHRRRVQVLVESAPDLI-AFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKR 147 (247)
Q Consensus 69 ~e~~~~~~~q~~~l~~~gvD~i-~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~ 147 (247)
+++.+-|- +...+.|+|+| +|..+.+..-++.+++++++.+...-..+|.|..+-..+ +...+.++.+.+ .+
T Consensus 97 DDvVe~Fv---~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~---e~yv~~akel~~-~g 169 (472)
T COG5016 97 DDVVEKFV---EKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTL---EYYVELAKELLE-MG 169 (472)
T ss_pred hHHHHHHH---HHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccCCcccH---HHHHHHHHHHHH-cC
Confidence 45555443 34567999998 889999999999999999998766677778877654332 234456666666 68
Q ss_pred CeEEEEcCC----ChhHHHHHHHHHHhhcCCCEEEEe
Q 025860 148 VVSVGINCT----PPRFISGLILIIKKVTAKPILIYP 180 (247)
Q Consensus 148 ~~avG~NC~----~p~~~~~~l~~l~~~~~~pl~vyP 180 (247)
+|.|-|-=. .|...-++++.+++..+.|+-+.-
T Consensus 170 ~DSIciKDmaGlltP~~ayelVk~iK~~~~~pv~lHt 206 (472)
T COG5016 170 VDSICIKDMAGLLTPYEAYELVKAIKKELPVPVELHT 206 (472)
T ss_pred CCEEEeecccccCChHHHHHHHHHHHHhcCCeeEEec
Confidence 898877652 499999999999998888875544
No 103
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=91.79 E-value=5.6 Score=39.44 Aligned_cols=97 Identities=13% Similarity=0.160 Sum_probs=64.7
Q ss_pred HHhcCCCCEE-EEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCC---
Q 025860 81 VLVESAPDLI-AFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT--- 156 (247)
Q Consensus 81 ~l~~~gvD~i-~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~--- 156 (247)
...++|+|.| +|-.++++..++.+++.+++.+...-+.+++++. .. -+=+-+.+.++.+.+ .|++.|.+-=+
T Consensus 104 ~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~--p~-~t~~~~~~~a~~l~~-~Gad~I~i~Dt~G~ 179 (592)
T PRK09282 104 KAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTTS--PV-HTIEKYVELAKELEE-MGCDSICIKDMAGL 179 (592)
T ss_pred HHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEeccC--CC-CCHHHHHHHHHHHHH-cCCCEEEECCcCCC
Confidence 3456899987 5668888999999999999875322333444432 11 011233445555555 58888776543
Q ss_pred -ChhHHHHHHHHHHhhcCCCEEEEeC
Q 025860 157 -PPRFISGLILIIKKVTAKPILIYPN 181 (247)
Q Consensus 157 -~p~~~~~~l~~l~~~~~~pl~vyPN 181 (247)
.|..+..+++.+++..+.||.+.-.
T Consensus 180 ~~P~~~~~lv~~lk~~~~~pi~~H~H 205 (592)
T PRK09282 180 LTPYAAYELVKALKEEVDLPVQLHSH 205 (592)
T ss_pred cCHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 3999999999999887788776654
No 104
>PLN02591 tryptophan synthase
Probab=91.69 E-value=8.9 Score=33.80 Aligned_cols=156 Identities=13% Similarity=0.094 Sum_probs=85.7
Q ss_pred HHHHHHHHhcCCCCEEEE----------------------ecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCC
Q 025860 75 HRRRVQVLVESAPDLIAF----------------------ETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSG 132 (247)
Q Consensus 75 ~~~q~~~l~~~gvD~i~~----------------------ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G 132 (247)
..+.++.|.++|||+|=+ +--.+++..-..++-+|+. .+.|++ -|+-. |... .
T Consensus 18 ~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~-~~~p~i-lm~Y~-N~i~--~ 92 (250)
T PLN02591 18 TAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQ-LSCPIV-LFTYY-NPIL--K 92 (250)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCCEE-EEecc-cHHH--H
Confidence 344788888999999822 1111222233333334433 367865 33321 2222 2
Q ss_pred CcHHHHHHHHHhCCCCeEEEEcCCChhHHHHHHHHHHhhcCCCE-EEEeCCCC--c--ccccccccc---cC------CC
Q 025860 133 DSLLECASIAESCKRVVSVGINCTPPRFISGLILIIKKVTAKPI-LIYPNSGE--F--YDADRKEWV---QN------TG 198 (247)
Q Consensus 133 ~~~~~~~~~~~~~~~~~avG~NC~~p~~~~~~l~~l~~~~~~pl-~vyPNaG~--~--~d~~~~~~~---~~------~~ 198 (247)
-.+++.++.+.+ .+++++-+.=-.++...++.+..+++.=.++ ++-||... . .......|. +. ..
T Consensus 93 ~G~~~F~~~~~~-aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~ 171 (250)
T PLN02591 93 RGIDKFMATIKE-AGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARA 171 (250)
T ss_pred hHHHHHHHHHHH-cCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCc
Confidence 245778888877 5899999987778888888887766532344 34477742 1 000011121 10 01
Q ss_pred CChHHHHHHHHHHHHc-CCeEEeecCCCChHHHHHHHHH
Q 025860 199 VSDEDFVSYVSKWCEV-GASLVGGCCRTTPNTIKGIYRT 236 (247)
Q Consensus 199 ~~~~~~~~~~~~~~~~-G~~iIGGCCGt~P~hI~al~~~ 236 (247)
-.+..+.+++++..+. +..++=|=-=++|+|++.+.+.
T Consensus 172 ~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~ 210 (250)
T PLN02591 172 SVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGW 210 (250)
T ss_pred CCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhc
Confidence 1144555555555543 5555545555679999998765
No 105
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=91.69 E-value=4.7 Score=43.01 Aligned_cols=99 Identities=15% Similarity=0.107 Sum_probs=69.5
Q ss_pred HhcCCCCEE-EEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHH---HHHHHHHhCCCCeEEEEcCC-
Q 025860 82 LVESAPDLI-AFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLL---ECASIAESCKRVVSVGINCT- 156 (247)
Q Consensus 82 l~~~gvD~i-~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~---~~~~~~~~~~~~~avG~NC~- 156 (247)
..+.|+|+| +|..+.++.-++.+++++++.+...-..+++|-+--.-.+.-.+++ +.++.+.+ .|++.|.|-=+
T Consensus 634 ~~~~GidifrifD~lN~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~-~Gad~I~ikDt~ 712 (1143)
T TIGR01235 634 AAQGGIDIFRVFDSLNWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEK-AGAHILGIKDMA 712 (1143)
T ss_pred HHHcCCCEEEECccCcCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHH-cCCCEEEECCCc
Confidence 456999998 8899999999999999999986333344454421101111223344 56666666 58998888664
Q ss_pred ---ChhHHHHHHHHHHhhcCCCEEEEeC
Q 025860 157 ---PPRFISGLILIIKKVTAKPILIYPN 181 (247)
Q Consensus 157 ---~p~~~~~~l~~l~~~~~~pl~vyPN 181 (247)
.|..+..+++.+++..+.||.+.-.
T Consensus 713 Gll~P~~~~~Lv~~lk~~~~~pi~~H~H 740 (1143)
T TIGR01235 713 GLLKPAAAKLLIKALREKTDLPIHFHTH 740 (1143)
T ss_pred CCcCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 3999999999999888888866553
No 106
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=91.65 E-value=0.97 Score=37.47 Aligned_cols=65 Identities=18% Similarity=0.238 Sum_probs=44.3
Q ss_pred HHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcC
Q 025860 78 RVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINC 155 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC 155 (247)
|++..+++|+|.|.+.+++ +.+++.+++.+++.+.+ +.+.++ .|-+++.+.+... .++|.|++-+
T Consensus 92 e~~ea~~~g~d~I~lD~~~-~~~~~~~v~~l~~~~~~--v~ie~S--------GGI~~~ni~~ya~--~gvD~isvg~ 156 (169)
T PF01729_consen 92 EAEEALEAGADIIMLDNMS-PEDLKEAVEELRELNPR--VKIEAS--------GGITLENIAEYAK--TGVDVISVGS 156 (169)
T ss_dssp HHHHHHHTT-SEEEEES-C-HHHHHHHHHHHHHHTTT--SEEEEE--------SSSSTTTHHHHHH--TT-SEEEECH
T ss_pred HHHHHHHhCCCEEEecCcC-HHHHHHHHHHHhhcCCc--EEEEEE--------CCCCHHHHHHHHh--cCCCEEEcCh
Confidence 4555666999999999985 89999999988887533 444443 4666666666543 4789888765
No 107
>PRK15063 isocitrate lyase; Provisional
Probab=91.47 E-value=6.3 Score=37.45 Aligned_cols=32 Identities=34% Similarity=0.380 Sum_probs=28.6
Q ss_pred HHHHHhcCCCCEEEEec-CCCHHHHHHHHHHHHh
Q 025860 78 RVQVLVESAPDLIAFET-IPNKIEAQAYAELLEE 110 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET-~~~~~E~~aa~~~~~~ 110 (247)
+..++.+ |+|+|++|| .++++|++.+.+.++.
T Consensus 270 Ra~AYa~-GAD~iw~Et~~~d~ee~~~fa~~v~~ 302 (428)
T PRK15063 270 RGLAYAP-YADLIWCETSTPDLEEARRFAEAIHA 302 (428)
T ss_pred HHHHHhc-CCCEEEeCCCCCCHHHHHHHHHhhcc
Confidence 7778887 999999998 8999999999988875
No 108
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=91.30 E-value=3.7 Score=39.82 Aligned_cols=99 Identities=12% Similarity=0.091 Sum_probs=70.3
Q ss_pred HHHHhcCCCCEE-EEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCC-
Q 025860 79 VQVLVESAPDLI-AFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT- 156 (247)
Q Consensus 79 ~~~l~~~gvD~i-~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~- 156 (247)
++...+.|+|+| +|-.++++.-++.+++++++.+...-..++++..... +-+-+.+.++.+.+ .|++.|.|-=+
T Consensus 103 v~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~---t~e~~~~~a~~l~~-~Gad~I~IkDta 178 (499)
T PRK12330 103 VEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIH---TVEGFVEQAKRLLD-MGADSICIKDMA 178 (499)
T ss_pred HHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCC---CHHHHHHHHHHHHH-cCCCEEEeCCCc
Confidence 444567899998 7788899999999999999986322245555543321 23444556666666 58888877654
Q ss_pred ---ChhHHHHHHHHHHhhc--CCCEEEEeC
Q 025860 157 ---PPRFISGLILIIKKVT--AKPILIYPN 181 (247)
Q Consensus 157 ---~p~~~~~~l~~l~~~~--~~pl~vyPN 181 (247)
.|..+..+++.+++.. +.||.+.-.
T Consensus 179 Gll~P~~~~~LV~~Lk~~~~~~ipI~~H~H 208 (499)
T PRK12330 179 ALLKPQPAYDIVKGIKEACGEDTRINLHCH 208 (499)
T ss_pred cCCCHHHHHHHHHHHHHhCCCCCeEEEEeC
Confidence 3999999999999886 688876654
No 109
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=91.28 E-value=8.5 Score=35.43 Aligned_cols=119 Identities=18% Similarity=0.185 Sum_probs=81.4
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEc
Q 025860 75 HRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGIN 154 (247)
Q Consensus 75 ~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~N 154 (247)
-..|+..|.++|+|++= =|+|+.++++++-+..+.. +.|++.-+.|+ ..-++..+. .+++.|=+|
T Consensus 36 tv~QI~~L~~aGceiVR-vavp~~~~A~al~~I~~~~--~iPlVADIHFd----------~~lAl~a~~--~g~dkiRIN 100 (346)
T TIGR00612 36 TVAQIRALEEAGCDIVR-VTVPDRESAAAFEAIKEGT--NVPLVADIHFD----------YRLAALAMA--KGVAKVRIN 100 (346)
T ss_pred HHHHHHHHHHcCCCEEE-EcCCCHHHHHhHHHHHhCC--CCCEEEeeCCC----------cHHHHHHHH--hccCeEEEC
Confidence 44599999999999987 4889999988877755543 69999999884 233444444 378889998
Q ss_pred CC---ChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHH
Q 025860 155 CT---PPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWC 212 (247)
Q Consensus 155 C~---~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (247)
=. +.+.+.++++..++ .+.|+=+=-|+|.+...--..|- ..+|+.+.+.+.+++
T Consensus 101 PGNig~~e~v~~vv~~ak~-~~ipIRIGVN~GSL~~~~~~kyg---~~t~eamveSAl~~v 157 (346)
T TIGR00612 101 PGNIGFRERVRDVVEKARD-HGKAMRIGVNHGSLERRLLEKYG---DATAEAMVQSALEEA 157 (346)
T ss_pred CCCCCCHHHHHHHHHHHHH-CCCCEEEecCCCCCcHHHHHHcC---CCCHHHHHHHHHHHH
Confidence 85 46777777776655 47888777899975321111121 135777777665554
No 110
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=91.20 E-value=3.2 Score=36.32 Aligned_cols=96 Identities=13% Similarity=0.078 Sum_probs=62.9
Q ss_pred HHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEc-CCC--c------ccCCCcHHHHHHHHHhCCC
Q 025860 77 RRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSK-DGV--N------VVSGDSLLECASIAESCKR 147 (247)
Q Consensus 77 ~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~-~~~--~------l~~G~~~~~~~~~~~~~~~ 147 (247)
++++.+++.|+|-+++=|.. +..-..+-+++++++ +. +++|+..+ ++. . ..++.++.+.++.+.+ .+
T Consensus 87 e~~~~~l~~Ga~~vvigT~a-~~~p~~~~~~~~~~g-~~-ivvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~~-~g 162 (243)
T TIGR01919 87 SSLRAALTGGRARVNGGTAA-LENPWWAAAVIRYGG-DI-VAVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLDS-GG 162 (243)
T ss_pred HHHHHHHHcCCCEEEECchh-hCCHHHHHHHHHHcc-cc-EEEEEEEecCCceEEEECCCeecCCCcHHHHHHHHHh-CC
Confidence 35666777899999987743 222233344555554 33 88999987 431 1 2367788999999887 57
Q ss_pred CeEEEEcCCC-------hhHHHHHHHHHHhhcCCCEEE
Q 025860 148 VVSVGINCTP-------PRFISGLILIIKKVTAKPILI 178 (247)
Q Consensus 148 ~~avG~NC~~-------p~~~~~~l~~l~~~~~~pl~v 178 (247)
+..|-++-.+ |. ..+++.+.+..+.|+++
T Consensus 163 ~~~ii~tdI~~dGt~~G~d--~~l~~~l~~~~~~pvia 198 (243)
T TIGR01919 163 CSRVVVTDSKKDGLSGGPN--ELLLEVVAARTDAIVAA 198 (243)
T ss_pred CCEEEEEecCCcccCCCcC--HHHHHHHHhhCCCCEEE
Confidence 7777777743 33 45777777777788643
No 111
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=91.06 E-value=2.7 Score=36.74 Aligned_cols=102 Identities=12% Similarity=0.128 Sum_probs=77.7
Q ss_pred HHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcC--------------CCcccCCCcHHHHHHHHHhCC
Q 025860 81 VLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKD--------------GVNVVSGDSLLECASIAESCK 146 (247)
Q Consensus 81 ~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~--------------~~~l~~G~~~~~~~~~~~~~~ 146 (247)
.++.+|+|=+-+.| +-+.....+-++.++++ ...+++++..+. +++...|-+..+.++.+.+ .
T Consensus 91 ~ll~aGADKVSINs-aAv~~p~lI~~~a~~FG-sQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~-~ 167 (256)
T COG0107 91 KLLRAGADKVSINS-AAVKDPELITEAADRFG-SQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVEE-L 167 (256)
T ss_pred HHHHcCCCeeeeCh-hHhcChHHHHHHHHHhC-CceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHHH-c
Confidence 45669999999888 45666677778888887 578888887643 2344567778888888887 6
Q ss_pred CCeEEEEcCCCh-----hHHHHHHHHHHhhcCCCEEEEeCCCCc
Q 025860 147 RVVSVGINCTPP-----RFISGLILIIKKVTAKPILIYPNSGEF 185 (247)
Q Consensus 147 ~~~avG~NC~~p-----~~~~~~l~~l~~~~~~pl~vyPNaG~~ 185 (247)
|+-=|.+||.+- -+=+++++.+++..++|+++---+|.+
T Consensus 168 GAGEIlLtsmD~DGtk~GyDl~l~~~v~~~v~iPvIASGGaG~~ 211 (256)
T COG0107 168 GAGEILLTSMDRDGTKAGYDLELTRAVREAVNIPVIASGGAGKP 211 (256)
T ss_pred CCceEEEeeecccccccCcCHHHHHHHHHhCCCCEEecCCCCcH
Confidence 888899999632 234788899999999999988877764
No 112
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=90.97 E-value=12 Score=37.07 Aligned_cols=98 Identities=17% Similarity=0.151 Sum_probs=65.3
Q ss_pred HHHhcCCCCEE-EEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCC--
Q 025860 80 QVLVESAPDLI-AFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT-- 156 (247)
Q Consensus 80 ~~l~~~gvD~i-~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~-- 156 (247)
+...++|+|.| +|-.+++...++..++.+++.+ +.+-++++...... -+-+-+.+.++.+.+ .+++.|.+-=+
T Consensus 98 ~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G--~~v~~~i~~t~~p~-~~~~~~~~~~~~~~~-~Gad~I~i~Dt~G 173 (582)
T TIGR01108 98 KKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHG--AHAQGTISYTTSPV-HTLETYLDLAEELLE-MGVDSICIKDMAG 173 (582)
T ss_pred HHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcC--CEEEEEEEeccCCC-CCHHHHHHHHHHHHH-cCCCEEEECCCCC
Confidence 33557899987 5557788889999999999875 44444333222111 122344556666665 58888776543
Q ss_pred --ChhHHHHHHHHHHhhcCCCEEEEeC
Q 025860 157 --PPRFISGLILIIKKVTAKPILIYPN 181 (247)
Q Consensus 157 --~p~~~~~~l~~l~~~~~~pl~vyPN 181 (247)
.|..+..+++.+++..+.||.+.-.
T Consensus 174 ~~~P~~v~~lv~~lk~~~~~pi~~H~H 200 (582)
T TIGR01108 174 ILTPKAAYELVSALKKRFGLPVHLHSH 200 (582)
T ss_pred CcCHHHHHHHHHHHHHhCCCceEEEec
Confidence 3999999999999887788766543
No 113
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=90.72 E-value=4.6 Score=37.61 Aligned_cols=98 Identities=19% Similarity=0.124 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEE-EEecCCCH-----H-HHHHHHHHHHh----hCCCCcEEEEEEEcCCCcccCCCc
Q 025860 66 ITVETLKDFHRRRVQVLVESAPDLI-AFETIPNK-----I-EAQAYAELLEE----ENIKIPAWFSFNSKDGVNVVSGDS 134 (247)
Q Consensus 66 ~s~~e~~~~~~~q~~~l~~~gvD~i-~~ET~~~~-----~-E~~aa~~~~~~----~~~~~pv~is~~~~~~~~l~~G~~ 134 (247)
++.+++.+ +++.|++.|||+| ..|++.+. + -++++.+++++ .+..+++....+ +..
T Consensus 143 ld~~~la~----~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit---------~~~ 209 (367)
T cd08205 143 LSPEELAE----LAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNIT---------GDP 209 (367)
T ss_pred CCHHHHHH----HHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcC---------CCH
Confidence 56666555 6777778999998 55555543 2 23333444433 232234444442 222
Q ss_pred HHHHHHHH---HhCCCCeEEEEcCC--ChhHHHHHHHHHHhhcCCCEEEEeCC
Q 025860 135 LLECASIA---ESCKRVVSVGINCT--PPRFISGLILIIKKVTAKPILIYPNS 182 (247)
Q Consensus 135 ~~~~~~~~---~~~~~~~avG~NC~--~p~~~~~~l~~l~~~~~~pl~vyPNa 182 (247)
.++++.. .+ .|++++-+|-- +.. .++.+.+..+.||..+|+.
T Consensus 210 -~e~i~~a~~a~~-~Gad~vmv~~~~~g~~----~~~~l~~~~~lpi~~H~a~ 256 (367)
T cd08205 210 -DELRRRADRAVE-AGANALLINPNLVGLD----ALRALAEDPDLPIMAHPAF 256 (367)
T ss_pred -HHHHHHHHHHHH-cCCCEEEEeccccccc----HHHHHHhcCCCeEEEccCc
Confidence 4554433 34 57888888774 332 2334444457888888886
No 114
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=90.72 E-value=5.8 Score=36.18 Aligned_cols=61 Identities=18% Similarity=0.253 Sum_probs=41.8
Q ss_pred CCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCCC----h--------hHHHHHHHHHHhhcCCCEEEEeC
Q 025860 114 KIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTP----P--------RFISGLILIIKKVTAKPILIYPN 181 (247)
Q Consensus 114 ~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~~----p--------~~~~~~l~~l~~~~~~pl~vyPN 181 (247)
+.|+++|+... +-+.+.++++.+.+ .++++|=+|+++ + +.+.++++.+++..++|+++.-.
T Consensus 99 ~~pvi~si~g~------~~~~~~~~a~~~~~-~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~ 171 (325)
T cd04739 99 SIPVIASLNGV------SAGGWVDYARQIEE-AGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLS 171 (325)
T ss_pred CCeEEEEeCCC------CHHHHHHHHHHHHh-cCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcC
Confidence 58999998321 11334566776666 478999999863 2 23467778888778899988853
No 115
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=90.71 E-value=3.2 Score=35.46 Aligned_cols=102 Identities=13% Similarity=0.058 Sum_probs=57.1
Q ss_pred HHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCC------CcccCCCcHHHHHHHHHhCCCCeE
Q 025860 77 RRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDG------VNVVSGDSLLECASIAESCKRVVS 150 (247)
Q Consensus 77 ~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~------~~l~~G~~~~~~~~~~~~~~~~~a 150 (247)
++++.+.+.|+|.+++=|.. +.....+.++.++++ ..+++++.++.. ..-.+..++.+.++.+.+ .+++.
T Consensus 87 ed~~~~~~~Ga~~vilg~~~-l~~~~~l~ei~~~~~--~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~-~g~~~ 162 (233)
T PRK00748 87 ETVEALLDAGVSRVIIGTAA-VKNPELVKEACKKFP--GKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFED-AGVKA 162 (233)
T ss_pred HHHHHHHHcCCCEEEECchH-HhCHHHHHHHHHHhC--CCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHh-cCCCE
Confidence 35556666899998876533 222223444455543 347778876531 111134566788888876 46776
Q ss_pred EEEcCCChhH-----HHHHHHHHHhhcCCCEEEEeCCCC
Q 025860 151 VGINCTPPRF-----ISGLILIIKKVTAKPILIYPNSGE 184 (247)
Q Consensus 151 vG~NC~~p~~-----~~~~l~~l~~~~~~pl~vyPNaG~ 184 (247)
|.++....+. -..+++++.+..+.|+ +.|+|.
T Consensus 163 ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipv--ia~GGi 199 (233)
T PRK00748 163 IIYTDISRDGTLSGPNVEATRELAAAVPIPV--IASGGV 199 (233)
T ss_pred EEEeeecCcCCcCCCCHHHHHHHHHhCCCCE--EEeCCC
Confidence 5555322111 1466777777667774 446653
No 116
>PRK12999 pyruvate carboxylase; Reviewed
Probab=90.69 E-value=13 Score=39.86 Aligned_cols=100 Identities=15% Similarity=0.110 Sum_probs=69.4
Q ss_pred HHHHhcCCCCEE-EEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEc----CCCccc-CCCcHHHHHHHHHhCCCCeEEE
Q 025860 79 VQVLVESAPDLI-AFETIPNKIEAQAYAELLEEENIKIPAWFSFNSK----DGVNVV-SGDSLLECASIAESCKRVVSVG 152 (247)
Q Consensus 79 ~~~l~~~gvD~i-~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~----~~~~l~-~G~~~~~~~~~~~~~~~~~avG 152 (247)
++...+.|+|+| +|-.+.++..++.+++++++.+ .-+-++++.. +..+.. +=.-+.+.++.+.+ .|++.|.
T Consensus 633 i~~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~g--~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~-~Ga~~i~ 709 (1146)
T PRK12999 633 VREAAAAGIDVFRIFDSLNWVENMRVAIDAVRETG--KIAEAAICYTGDILDPARAKYDLDYYVDLAKELEK-AGAHILA 709 (1146)
T ss_pred HHHHHHcCCCEEEEeccCChHHHHHHHHHHHHHcC--CeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHH-cCCCEEE
Confidence 445567899998 6778888989999999999875 4444555544 222211 11233456666666 5888887
Q ss_pred EcCC----ChhHHHHHHHHHHhhcCCCEEEEeC
Q 025860 153 INCT----PPRFISGLILIIKKVTAKPILIYPN 181 (247)
Q Consensus 153 ~NC~----~p~~~~~~l~~l~~~~~~pl~vyPN 181 (247)
|-=+ .|..+..+++.+++..+.||.+.-.
T Consensus 710 ikDt~G~l~P~~~~~lv~~lk~~~~ipi~~H~H 742 (1146)
T PRK12999 710 IKDMAGLLKPAAAYELVSALKEEVDLPIHLHTH 742 (1146)
T ss_pred ECCccCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 7654 3999999999999888888876554
No 117
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=90.69 E-value=6.5 Score=34.28 Aligned_cols=58 Identities=14% Similarity=0.124 Sum_probs=38.1
Q ss_pred CCcEEEEEEEcCCCcccCCCcHHH---HHHHHHhCCCCeEEEEcCCCh-----------------hHHHHHHHHHHhhcC
Q 025860 114 KIPAWFSFNSKDGVNVVSGDSLLE---CASIAESCKRVVSVGINCTPP-----------------RFISGLILIIKKVTA 173 (247)
Q Consensus 114 ~~pv~is~~~~~~~~l~~G~~~~~---~~~~~~~~~~~~avG~NC~~p-----------------~~~~~~l~~l~~~~~ 173 (247)
+.|+.+|+- |.++++ +++.+. .++++|-+||+.| +.+.++++.++. .+
T Consensus 67 ~~~vivnv~---------~~~~ee~~~~a~~v~--~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~-~~ 134 (231)
T TIGR00736 67 RALVSVNVR---------FVDLEEAYDVLLTIA--EHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE-LN 134 (231)
T ss_pred cCCEEEEEe---------cCCHHHHHHHHHHHh--cCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc-CC
Confidence 569999984 334444 444443 3689999999744 345666666663 47
Q ss_pred CCEEEEeCCC
Q 025860 174 KPILIYPNSG 183 (247)
Q Consensus 174 ~pl~vyPNaG 183 (247)
+|+.|.--.+
T Consensus 135 ~PVsvKiR~~ 144 (231)
T TIGR00736 135 KPIFVKIRGN 144 (231)
T ss_pred CcEEEEeCCC
Confidence 8888776554
No 118
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.53 E-value=6.3 Score=33.85 Aligned_cols=102 Identities=21% Similarity=0.244 Sum_probs=59.2
Q ss_pred HHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEE---c
Q 025860 78 RVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGI---N 154 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~---N 154 (247)
|++..+++|++||+ -|.+. ..+++++++. ++|++ +.-.++.++...+. .|++.|++ .
T Consensus 80 ~~~~a~~aGA~Fiv---sP~~~--~~v~~~~~~~--~i~~i-----------PG~~T~~E~~~A~~--~Gad~vklFPa~ 139 (213)
T PRK06552 80 TARLAILAGAQFIV---SPSFN--RETAKICNLY--QIPYL-----------PGCMTVTEIVTALE--AGSEIVKLFPGS 139 (213)
T ss_pred HHHHHHHcCCCEEE---CCCCC--HHHHHHHHHc--CCCEE-----------CCcCCHHHHHHHHH--cCCCEEEECCcc
Confidence 55556667888877 23332 2344555654 46766 12257788887664 58999998 4
Q ss_pred CCChhHHHHHHHHHHhhc-CCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEEeecCC
Q 025860 155 CTPPRFISGLILIIKKVT-AKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCR 224 (247)
Q Consensus 155 C~~p~~~~~~l~~l~~~~-~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iIGGCCG 224 (247)
..++++ ++.++... +.|++ |=+| +++ +.+.+|++.|+..+|..-.
T Consensus 140 ~~G~~~----ik~l~~~~p~ip~~--atGG---------------I~~----~N~~~~l~aGa~~vavgs~ 185 (213)
T PRK06552 140 TLGPSF----IKAIKGPLPQVNVM--VTGG---------------VNL----DNVKDWFAAGADAVGIGGE 185 (213)
T ss_pred cCCHHH----HHHHhhhCCCCEEE--EECC---------------CCH----HHHHHHHHCCCcEEEEchH
Confidence 445554 44443332 24432 4333 334 4566799999888765533
No 119
>PRK08227 autoinducer 2 aldolase; Validated
Probab=90.40 E-value=9.3 Score=33.99 Aligned_cols=91 Identities=9% Similarity=0.088 Sum_probs=46.3
Q ss_pred HHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCC-----cccCCCcHHHHHHHHHhCCCCeEEEE
Q 025860 79 VQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGV-----NVVSGDSLLECASIAESCKRVVSVGI 153 (247)
Q Consensus 79 ~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~-----~l~~G~~~~~~~~~~~~~~~~~avG~ 153 (247)
+..+.+ |+|.|+.= +.+++.......+.|+++-++-...- .-.--.+++++++ .++++|++
T Consensus 48 ~~~i~~-~~da~~~~--------~G~~~~~~~~~~~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvr-----lGAdAV~~ 113 (264)
T PRK08227 48 IAPLFP-YADVLMCT--------RGILRSVVPPATNKPVVLRASGGNSILKELSNEAVAVDMEDAVR-----LNACAVAA 113 (264)
T ss_pred HHHHhh-cCCEEEeC--------hhHHHhcccccCCCcEEEEEcCCCCCCCCCCcccceecHHHHHH-----CCCCEEEE
Confidence 444554 79999842 44444333333468988887632110 0001133555543 47888888
Q ss_pred cCC-ChhHHHHHHHHHHh------hcCCCEEE-EeCCC
Q 025860 154 NCT-PPRFISGLILIIKK------VTAKPILI-YPNSG 183 (247)
Q Consensus 154 NC~-~p~~~~~~l~~l~~------~~~~pl~v-yPNaG 183 (247)
..- +.+.=.+.|+.+.+ .+..|+++ ||-..
T Consensus 114 ~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~ 151 (264)
T PRK08227 114 QVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGK 151 (264)
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCC
Confidence 874 33222233332222 26789655 65543
No 120
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=90.38 E-value=3.2 Score=35.36 Aligned_cols=112 Identities=19% Similarity=0.184 Sum_probs=67.9
Q ss_pred HHHHHHHHhcCCCCEEEEecC----CCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeE
Q 025860 75 HRRRVQVLVESAPDLIAFETI----PNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVS 150 (247)
Q Consensus 75 ~~~q~~~l~~~gvD~i~~ET~----~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~a 150 (247)
+.+|++.+.++|+|++++-.- |+..+.+..++.+++.+ ++|+++.+ .+++++.. +.+ .+++.
T Consensus 81 ~~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v-----------~t~~ea~~-a~~-~G~d~ 146 (219)
T cd04729 81 TIEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADI-----------STLEEALN-AAK-LGFDI 146 (219)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEEC-----------CCHHHHHH-HHH-cCCCE
Confidence 345888899999998887421 22236677777777775 57777643 24556644 334 58999
Q ss_pred EEEc-CC--C-----hhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEEe
Q 025860 151 VGIN-CT--P-----PRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVG 220 (247)
Q Consensus 151 vG~N-C~--~-----p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iIG 220 (247)
+++| .. . .......++.+++..+.|++ +++|. .++ +.+.++++.|+..++
T Consensus 147 i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvi--a~GGI--------------~~~----~~~~~~l~~GadgV~ 204 (219)
T cd04729 147 IGTTLSGYTEETAKTEDPDFELLKELRKALGIPVI--AEGRI--------------NSP----EQAAKALELGADAVV 204 (219)
T ss_pred EEccCccccccccCCCCCCHHHHHHHHHhcCCCEE--EeCCC--------------CCH----HHHHHHHHCCCCEEE
Confidence 8875 21 0 11123677777776677854 45543 123 344556677776655
No 121
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=90.24 E-value=6.6 Score=37.61 Aligned_cols=99 Identities=17% Similarity=0.157 Sum_probs=65.9
Q ss_pred HHHHhcCCCCEE-EEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCC-
Q 025860 79 VQVLVESAPDLI-AFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT- 156 (247)
Q Consensus 79 ~~~l~~~gvD~i-~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~- 156 (247)
++...++|+|.| +|-.+++..-++.+++.+++.+ ..+-++++.....+ -+-+-+.+.++.+.+ .|++.|.+-=+
T Consensus 102 v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G--~~v~~~i~~t~~p~-~~~~~~~~~a~~l~~-~Gad~I~i~Dt~ 177 (448)
T PRK12331 102 VQKSVENGIDIIRIFDALNDVRNLETAVKATKKAG--GHAQVAISYTTSPV-HTIDYFVKLAKEMQE-MGADSICIKDMA 177 (448)
T ss_pred HHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcC--CeEEEEEEeecCCC-CCHHHHHHHHHHHHH-cCCCEEEEcCCC
Confidence 344567899987 4456677777888888888875 44444343332222 122334566666666 58888877654
Q ss_pred ---ChhHHHHHHHHHHhhcCCCEEEEeC
Q 025860 157 ---PPRFISGLILIIKKVTAKPILIYPN 181 (247)
Q Consensus 157 ---~p~~~~~~l~~l~~~~~~pl~vyPN 181 (247)
.|..+..+++.+++..+.||.+.-.
T Consensus 178 G~l~P~~v~~lv~alk~~~~~pi~~H~H 205 (448)
T PRK12331 178 GILTPYVAYELVKRIKEAVTVPLEVHTH 205 (448)
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 3999999999999887788876553
No 122
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=90.00 E-value=4.1 Score=39.18 Aligned_cols=99 Identities=18% Similarity=0.205 Sum_probs=66.2
Q ss_pred HHHHhcCCCCEE-EEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCC-
Q 025860 79 VQVLVESAPDLI-AFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT- 156 (247)
Q Consensus 79 ~~~l~~~gvD~i-~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~- 156 (247)
++...++|+|.| +|-.+++++-++..++.+++.+...-..+++++.+ .- +=+-+.+.++.+.+ .|++.|.+-=+
T Consensus 101 v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p--~~-t~e~~~~~a~~l~~-~Gad~I~i~Dt~ 176 (467)
T PRK14041 101 VKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTVSP--VH-TLEYYLEFARELVD-MGVDSICIKDMA 176 (467)
T ss_pred HHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEeccCC--CC-CHHHHHHHHHHHHH-cCCCEEEECCcc
Confidence 333567899976 56677888888888899988753223334444432 10 11234456666665 58888777554
Q ss_pred ---ChhHHHHHHHHHHhhcCCCEEEEeC
Q 025860 157 ---PPRFISGLILIIKKVTAKPILIYPN 181 (247)
Q Consensus 157 ---~p~~~~~~l~~l~~~~~~pl~vyPN 181 (247)
.|..+..+++.+++..+.||.+.-.
T Consensus 177 G~l~P~~v~~Lv~~lk~~~~vpI~~H~H 204 (467)
T PRK14041 177 GLLTPKRAYELVKALKKKFGVPVEVHSH 204 (467)
T ss_pred CCcCHHHHHHHHHHHHHhcCCceEEEec
Confidence 3999999999999887888876654
No 123
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=89.92 E-value=0.85 Score=39.45 Aligned_cols=96 Identities=19% Similarity=0.197 Sum_probs=62.3
Q ss_pred HHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCC-Cc------ccCCCcHHHHHHHHHhCCCCeE
Q 025860 78 RVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDG-VN------VVSGDSLLECASIAESCKRVVS 150 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~-~~------l~~G~~~~~~~~~~~~~~~~~a 150 (247)
.++.+++.|+|-+++=|.. +.....+-+++++++ +-.+++|+.+.++ .. ..++.++.+.++.+.+ .++..
T Consensus 87 d~~~ll~~Ga~~Vvigt~~-~~~~~~l~~~~~~~g-~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~-~g~~~ 163 (229)
T PF00977_consen 87 DAERLLDAGADRVVIGTEA-LEDPELLEELAERYG-SQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEE-LGAGE 163 (229)
T ss_dssp HHHHHHHTT-SEEEESHHH-HHCCHHHHHHHHHHG-GGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHH-TT-SE
T ss_pred HHHHHHHhCCCEEEeChHH-hhchhHHHHHHHHcC-cccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHh-cCCcE
Confidence 4556777999988886532 222233444555565 4589999998875 11 2245679999999987 58888
Q ss_pred EEEcCCC-------hhHHHHHHHHHHhhcCCCEEE
Q 025860 151 VGINCTP-------PRFISGLILIIKKVTAKPILI 178 (247)
Q Consensus 151 vG~NC~~-------p~~~~~~l~~l~~~~~~pl~v 178 (247)
|-+++.+ |. .++++.+.+..+.|+++
T Consensus 164 ii~tdi~~dGt~~G~d--~~~~~~l~~~~~~~via 196 (229)
T PF00977_consen 164 IILTDIDRDGTMQGPD--LELLKQLAEAVNIPVIA 196 (229)
T ss_dssp EEEEETTTTTTSSS----HHHHHHHHHHHSSEEEE
T ss_pred EEEeeccccCCcCCCC--HHHHHHHHHHcCCCEEE
Confidence 8888842 33 46788887777888644
No 124
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=89.87 E-value=12 Score=33.17 Aligned_cols=85 Identities=9% Similarity=-0.016 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcc----cCCCcHHHHHHHHHhC-CCCeEEEEcCC-ChhHHHHHHHHHH
Q 025860 96 PNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNV----VSGDSLLECASIAESC-KRVVSVGINCT-PPRFISGLILIIK 169 (247)
Q Consensus 96 ~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l----~~G~~~~~~~~~~~~~-~~~~avG~NC~-~p~~~~~~l~~l~ 169 (247)
.+.++...+++.+.+.+. --+-+.+.|...... .+-..+.++++.+++. .-+..+.++.. .++.+.++++.+.
T Consensus 108 ~~~~~~~~~a~~~~~~G~-d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~ 186 (289)
T cd02810 108 SSKEDYVELARKIERAGA-KALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAE 186 (289)
T ss_pred CCHHHHHHHHHHHHHhCC-CEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 356677666666665531 123344444432211 1112344555555542 12345666654 4455666666554
Q ss_pred hhcCCCEEEEeCC
Q 025860 170 KVTAKPILIYPNS 182 (247)
Q Consensus 170 ~~~~~pl~vyPNa 182 (247)
+. ..-.++-.|.
T Consensus 187 ~~-Gad~i~~~~~ 198 (289)
T cd02810 187 RA-GADGLTAINT 198 (289)
T ss_pred Hc-CCCEEEEEcc
Confidence 43 2334444553
No 125
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=89.73 E-value=3.4 Score=37.30 Aligned_cols=44 Identities=23% Similarity=0.321 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEE
Q 025860 75 HRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNS 123 (247)
Q Consensus 75 ~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~ 123 (247)
--+|++...++|+|+|++|.+.+.+|++.+.+.+ ++|+++.++.
T Consensus 168 AI~Ra~aY~eAGAD~ifi~~~~~~~~i~~~~~~~-----~~Pl~~n~~~ 211 (292)
T PRK11320 168 AIERAQAYVEAGADMIFPEAMTELEMYRRFADAV-----KVPILANITE 211 (292)
T ss_pred HHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHhc-----CCCEEEEecc
Confidence 3348888999999999999999999998776643 4799887763
No 126
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=89.62 E-value=3.3 Score=37.15 Aligned_cols=68 Identities=13% Similarity=0.179 Sum_probs=48.1
Q ss_pred HHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcC
Q 025860 77 RRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINC 155 (247)
Q Consensus 77 ~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC 155 (247)
+|+...+++|+|.|++.+|+ +++++.+++.+++.+.+..+.+..+ .|.++..+.+... .|+|.|.+-.
T Consensus 193 eea~~a~~agaDiI~LDn~~-~e~l~~~v~~l~~~~~~~~~~leaS--------GGI~~~ni~~yA~--tGvD~Is~ga 260 (278)
T PRK08385 193 EDALKAAKAGADIIMLDNMT-PEEIREVIEALKREGLRERVKIEVS--------GGITPENIEEYAK--LDVDVISLGA 260 (278)
T ss_pred HHHHHHHHcCcCEEEECCCC-HHHHHHHHHHHHhcCcCCCEEEEEE--------CCCCHHHHHHHHH--cCCCEEEeCh
Confidence 45666677999999999984 9999999998887542112333332 4777777776554 5899887765
No 127
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=89.61 E-value=1.6 Score=39.28 Aligned_cols=77 Identities=23% Similarity=0.175 Sum_probs=50.6
Q ss_pred HHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCC
Q 025860 77 RRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT 156 (247)
Q Consensus 77 ~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~ 156 (247)
+++.+.+++|+|.|+.|-+.+.+|++...+.++ .|+.+.++-... +++..+ ..+.+ .|+.-|-+-.+
T Consensus 170 ~Ra~AY~eAGAD~if~~al~~~e~i~~f~~av~-----~pl~~N~t~~g~------tp~~~~-~~L~~-~Gv~~V~~~~~ 236 (289)
T COG2513 170 ERAQAYVEAGADAIFPEALTDLEEIRAFAEAVP-----VPLPANITEFGK------TPLLTV-AELAE-LGVKRVSYGLT 236 (289)
T ss_pred HHHHHHHHcCCcEEccccCCCHHHHHHHHHhcC-----CCeeeEeeccCC------CCCcCH-HHHHh-cCceEEEECcH
Confidence 488888999999999999999999988777665 566666664322 222222 34555 57776666555
Q ss_pred ChhHHHHHHH
Q 025860 157 PPRFISGLIL 166 (247)
Q Consensus 157 ~p~~~~~~l~ 166 (247)
.-..+...+.
T Consensus 237 ~~raa~~a~~ 246 (289)
T COG2513 237 AFRAALKAAE 246 (289)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 128
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=89.60 E-value=4 Score=39.34 Aligned_cols=66 Identities=11% Similarity=0.110 Sum_probs=47.2
Q ss_pred HHHHHHHhcCCCCEEEEec-CCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEE
Q 025860 76 RRRVQVLVESAPDLIAFET-IPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGI 153 (247)
Q Consensus 76 ~~q~~~l~~~gvD~i~~ET-~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~ 153 (247)
.++++.|+++|+|+|.+++ -.+...+...++.+++..++.|+++. ++.+.+++...+ + .|+++|.+
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g----------~v~t~e~a~~l~-~-aGad~i~v 296 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAG----------NVATAEAARALI-E-AGADAVKV 296 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEe----------ccCCHHHHHHHH-H-cCCCEEEE
Confidence 5688899999999999886 35555566667777765447888872 456667666644 3 47888865
No 129
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=89.53 E-value=16 Score=33.23 Aligned_cols=72 Identities=22% Similarity=0.355 Sum_probs=43.8
Q ss_pred HHHHHhCCCCeEEEEcCCC---------h-----------------hHHHHHHHHHHhhc--CCCEEEEeCCCCcccccc
Q 025860 139 ASIAESCKRVVSVGINCTP---------P-----------------RFISGLILIIKKVT--AKPILIYPNSGEFYDADR 190 (247)
Q Consensus 139 ~~~~~~~~~~~avG~NC~~---------p-----------------~~~~~~l~~l~~~~--~~pl~vyPNaG~~~d~~~ 190 (247)
++.+.+ .|.|+|=|||.+ | ..+..+++.+++.. +.||++.-|.....+.
T Consensus 160 A~~a~~-aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~-- 236 (336)
T cd02932 160 ARRAVE-AGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEG-- 236 (336)
T ss_pred HHHHHH-cCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCC--
Confidence 333344 599999999853 1 23467778888776 6789988775321110
Q ss_pred cccccCCCCChHHHHHHHHHHHHcCCeEEe
Q 025860 191 KEWVQNTGVSDEDFVSYVSKWCEVGASLVG 220 (247)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~G~~iIG 220 (247)
..+++++.+.++.+.+.|+.+|=
T Consensus 237 -------g~~~~e~~~ia~~Le~~gvd~ie 259 (336)
T cd02932 237 -------GWDLEDSVELAKALKELGVDLID 259 (336)
T ss_pred -------CCCHHHHHHHHHHHHHcCCCEEE
Confidence 12355666666666666765553
No 130
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=89.49 E-value=12 Score=34.61 Aligned_cols=125 Identities=16% Similarity=0.183 Sum_probs=75.2
Q ss_pred HhcCCCCEEEEecC--CC-H--------HHHHHHHHHHHhhCCCCcEEEEE-EEcCCCcccCC--------CcHHHHHHH
Q 025860 82 LVESAPDLIAFETI--PN-K--------IEAQAYAELLEEENIKIPAWFSF-NSKDGVNVVSG--------DSLLECASI 141 (247)
Q Consensus 82 l~~~gvD~i~~ET~--~~-~--------~E~~aa~~~~~~~~~~~pv~is~-~~~~~~~l~~G--------~~~~~~~~~ 141 (247)
+++.|+|.+-+=.+ |+ . ..+..+.+..++. ++|+++-+ +........+. +.+..+++.
T Consensus 115 a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~--giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~ 192 (340)
T PRK12858 115 IKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRAN--DIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEE 192 (340)
T ss_pred HHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHc--CCceEEEEeccCCCccccccccccccCHHHHHHHHHH
Confidence 45678888866555 33 1 1122233333444 69999875 33332222222 345566666
Q ss_pred HHh-CCCCeEEEEcCC-Ch---------------hHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHH
Q 025860 142 AES-CKRVVSVGINCT-PP---------------RFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDF 204 (247)
Q Consensus 142 ~~~-~~~~~avG~NC~-~p---------------~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~ 204 (247)
+.+ ..|+|.+=+.-. .+ +.....++++......|+++. .+| .+.+.|
T Consensus 193 ~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvl-sgG---------------~~~~~f 256 (340)
T PRK12858 193 FSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFL-SAG---------------VSPELF 256 (340)
T ss_pred HhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEE-CCC---------------CCHHHH
Confidence 653 368999998875 33 222355666666677886443 222 135668
Q ss_pred HHHHHHHHHcCCeEEeecCC
Q 025860 205 VSYVSKWCEVGASLVGGCCR 224 (247)
Q Consensus 205 ~~~~~~~~~~G~~iIGGCCG 224 (247)
.+.++..++.|+++-|=+||
T Consensus 257 ~~~l~~A~~aGa~f~Gvl~G 276 (340)
T PRK12858 257 RRTLEFACEAGADFSGVLCG 276 (340)
T ss_pred HHHHHHHHHcCCCccchhhh
Confidence 88888888999999999998
No 131
>PLN02417 dihydrodipicolinate synthase
Probab=89.41 E-value=3.8 Score=36.49 Aligned_cols=102 Identities=14% Similarity=0.021 Sum_probs=64.8
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEe-c-----CCCHHHHHHHHHHHHh-hCCCCcEEEEEEEcCCCcccCCCcHHHH
Q 025860 66 ITVETLKDFHRRRVQVLVESAPDLIAFE-T-----IPNKIEAQAYAELLEE-ENIKIPAWFSFNSKDGVNVVSGDSLLEC 138 (247)
Q Consensus 66 ~s~~e~~~~~~~q~~~l~~~gvD~i~~E-T-----~~~~~E~~aa~~~~~~-~~~~~pv~is~~~~~~~~l~~G~~~~~~ 138 (247)
++.+. ++++++.+++.|||.|++- | .-+.+|-+.+++.+.+ ...++|+++.+ ...+..++
T Consensus 19 iD~~~----~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv---------~~~~t~~~ 85 (280)
T PLN02417 19 FDLEA----YDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNT---------GSNSTREA 85 (280)
T ss_pred cCHHH----HHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEEC---------CCccHHHH
Confidence 56555 4558888889999998763 2 2246777777776554 33358998777 34455666
Q ss_pred HHHHHh--CCCCeEEEEcC-----CChhHHHHHHHHHHhhcCCCEEEEeCC
Q 025860 139 ASIAES--CKRVVSVGINC-----TPPRFISGLILIIKKVTAKPILIYPNS 182 (247)
Q Consensus 139 ~~~~~~--~~~~~avG~NC-----~~p~~~~~~l~~l~~~~~~pl~vyPNa 182 (247)
++.++. ..|++++-+-= .+.+.+..-++.+.+.. |+++|=|-
T Consensus 86 i~~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~~--pi~lYn~P 134 (280)
T PLN02417 86 IHATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDMG--PTIIYNVP 134 (280)
T ss_pred HHHHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhhC--CEEEEECh
Confidence 665542 35788766532 12355666667776654 99999553
No 132
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=89.30 E-value=10 Score=33.66 Aligned_cols=114 Identities=18% Similarity=0.270 Sum_probs=65.6
Q ss_pred CeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcE
Q 025860 38 PILVAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPA 117 (247)
Q Consensus 38 ~~~VaGsiGP~g~~l~~g~eY~g~y~~~~s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv 117 (247)
+.+|.+++ ||+. |. .|.++..+ .-.+.+.++|+|.+=+|--. |....++.+-+. ++||
T Consensus 77 ~~~vv~Dm-Pf~s-----------y~--~s~e~av~---nA~rl~ke~GadaVKlEGg~---~~~~~i~~l~~~--GIPV 134 (261)
T PF02548_consen 77 NAFVVADM-PFGS-----------YQ--ASPEQAVR---NAGRLMKEAGADAVKLEGGA---EIAETIKALVDA--GIPV 134 (261)
T ss_dssp SSEEEEE---TTS-----------ST--SSHHHHHH---HHHHHHHTTT-SEEEEEBSG---GGHHHHHHHHHT--T--E
T ss_pred CceEEecC-Cccc-----------cc--CCHHHHHH---HHHHHHHhcCCCEEEeccch---hHHHHHHHHHHC--CCcE
Confidence 67888888 6763 42 25555443 23344456999999999755 334455556655 5899
Q ss_pred EEEEEEcCC------CcccCCCcHHHHHHHHHh-----CCCCeEEEEcCCChhHHHHHHHHHHhhcCCCEE
Q 025860 118 WFSFNSKDG------VNVVSGDSLLECASIAES-----CKRVVSVGINCTPPRFISGLILIIKKVTAKPIL 177 (247)
Q Consensus 118 ~is~~~~~~------~~l~~G~~~~~~~~~~~~-----~~~~~avG~NC~~p~~~~~~l~~l~~~~~~pl~ 177 (247)
+--+=+.+. +.-.-|.+.+++.+.+++ ..|+.+|-+-|+..+ +-+.+.+..++|.+
T Consensus 135 ~gHiGLtPQ~~~~~GGyr~qGk~~~~a~~l~~~A~ale~AGaf~ivlE~vp~~----la~~It~~l~IPtI 201 (261)
T PF02548_consen 135 MGHIGLTPQSVHQLGGYRVQGKTAEEAEKLLEDAKALEEAGAFAIVLECVPAE----LAKAITEALSIPTI 201 (261)
T ss_dssp EEEEES-GGGHHHHTSS--CSTSHHHHHHHHHHHHHHHHHT-SEEEEESBBHH----HHHHHHHHSSS-EE
T ss_pred EEEecCchhheeccCCceEEecCHHHHHHHHHHHHHHHHcCccEEeeecCHHH----HHHHHHHhCCCCEE
Confidence 988866542 223356666666554432 258999999999644 44555666788865
No 133
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=89.15 E-value=1.5 Score=40.55 Aligned_cols=83 Identities=19% Similarity=0.200 Sum_probs=52.6
Q ss_pred CCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEec-CCCHHHHHHHHHHHHhhCCC
Q 025860 36 HRPILVAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFET-IPNKIEAQAYAELLEEENIK 114 (247)
Q Consensus 36 ~~~~~VaGsiGP~g~~l~~g~eY~g~y~~~~s~~e~~~~~~~q~~~l~~~gvD~i~~ET-~~~~~E~~aa~~~~~~~~~~ 114 (247)
..+.+|++++||... +.++++.|+++|+|+|++-+ ..+.......++.+|+..++
T Consensus 94 ~~~l~V~aavg~~~~------------------------~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~ 149 (352)
T PF00478_consen 94 KGRLLVAAAVGTRDD------------------------DFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPD 149 (352)
T ss_dssp TSCBCEEEEEESSTC------------------------HHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTT
T ss_pred cccceEEEEecCCHH------------------------HHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCC
Confidence 457899999999731 24488889999999999984 44555556667777776556
Q ss_pred CcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEc
Q 025860 115 IPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGIN 154 (247)
Q Consensus 115 ~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~N 154 (247)
+||++-=.. + .+.++.|.+ .++|+|=+-
T Consensus 150 ~~viaGNV~-------T----~e~a~~L~~-aGad~vkVG 177 (352)
T PF00478_consen 150 VPVIAGNVV-------T----YEGAKDLID-AGADAVKVG 177 (352)
T ss_dssp SEEEEEEE--------S----HHHHHHHHH-TT-SEEEES
T ss_pred ceEEecccC-------C----HHHHHHHHH-cCCCEEEEe
Confidence 888854322 2 233334444 467775443
No 134
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=89.11 E-value=1.4 Score=39.62 Aligned_cols=43 Identities=23% Similarity=0.335 Sum_probs=34.4
Q ss_pred HHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEE
Q 025860 76 RRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNS 123 (247)
Q Consensus 76 ~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~ 123 (247)
-+|+++..++|+|++++|.+.+.+|++.+.+. . +.|+++.++.
T Consensus 164 I~Ra~ay~~AGAD~vfi~g~~~~e~i~~~~~~---i--~~Pl~~n~~~ 206 (285)
T TIGR02317 164 IERAKAYVEAGADMIFPEALTSLEEFRQFAKA---V--KVPLLANMTE 206 (285)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHh---c--CCCEEEEecc
Confidence 33888899999999999999999998865553 3 3798887754
No 135
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=89.09 E-value=15 Score=32.24 Aligned_cols=89 Identities=15% Similarity=0.078 Sum_probs=55.9
Q ss_pred HHHHHhCCCCeEEEEcCC--ChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCC
Q 025860 139 ASIAESCKRVVSVGINCT--PPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGA 216 (247)
Q Consensus 139 ~~~~~~~~~~~avG~NC~--~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 216 (247)
++...+ .+++.|.+-+. ....+.++++..++. ...+.+++ . +. + ..+|+.+.+.+++..+.|+
T Consensus 91 i~~a~~-~g~~~iri~~~~s~~~~~~~~i~~ak~~-G~~v~~~~--~---~~----~----~~~~~~~~~~~~~~~~~G~ 155 (263)
T cd07943 91 LKMAAD-LGVDVVRVATHCTEADVSEQHIGAARKL-GMDVVGFL--M---MS----H----MASPEELAEQAKLMESYGA 155 (263)
T ss_pred HHHHHH-cCCCEEEEEechhhHHHHHHHHHHHHHC-CCeEEEEE--E---ec----c----CCCHHHHHHHHHHHHHcCC
Confidence 444444 47888777554 344566666665543 33333333 1 11 0 1358889999999999999
Q ss_pred eEEeec--C-CCChHHHHHHHHHhhCCCC
Q 025860 217 SLVGGC--C-RTTPNTIKGIYRTLSNRSS 242 (247)
Q Consensus 217 ~iIGGC--C-Gt~P~hI~al~~~l~~~~~ 242 (247)
..|.=| - ..+|+.+..|-+.+++.-+
T Consensus 156 d~i~l~DT~G~~~P~~v~~lv~~l~~~~~ 184 (263)
T cd07943 156 DCVYVTDSAGAMLPDDVRERVRALREALD 184 (263)
T ss_pred CEEEEcCCCCCcCHHHHHHHHHHHHHhCC
Confidence 998532 1 2489999999888876533
No 136
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=89.00 E-value=12 Score=31.17 Aligned_cols=100 Identities=17% Similarity=0.039 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEecC--CCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHh
Q 025860 67 TVETLKDFHRRRVQVLVESAPDLIAFETI--PNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAES 144 (247)
Q Consensus 67 s~~e~~~~~~~q~~~l~~~gvD~i~~ET~--~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~ 144 (247)
+.++..+ .++.+ +.|+|+| |-- -.......+++.+++..++.++.+.+.+.+.+. ..++.+.+
T Consensus 10 ~~~~a~~----~~~~l-~~~v~~i--ev~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~--------~~~~~~~~ 74 (206)
T TIGR03128 10 DIEEALE----LAEKV-ADYVDII--EIGTPLIKNEGIEAVKEMKEAFPDRKVLADLKTMDAGE--------YEAEQAFA 74 (206)
T ss_pred CHHHHHH----HHHHc-ccCeeEE--EeCCHHHHHhCHHHHHHHHHHCCCCEEEEEEeeccchH--------HHHHHHHH
Confidence 4455444 67777 7889864 642 222333445556665432456666654432221 13445555
Q ss_pred CCCCeEEEEcCC-ChhHHHHHHHHHHhhcCCCEEEE-eCCC
Q 025860 145 CKRVVSVGINCT-PPRFISGLILIIKKVTAKPILIY-PNSG 183 (247)
Q Consensus 145 ~~~~~avG~NC~-~p~~~~~~l~~l~~~~~~pl~vy-PNaG 183 (247)
.|++.|-+.|. ++..+..+++..++. +.++++- +|..
T Consensus 75 -~Gad~i~vh~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~ 113 (206)
T TIGR03128 75 -AGADIVTVLGVADDATIKGAVKAAKKH-GKEVQVDLINVK 113 (206)
T ss_pred -cCCCEEEEeccCCHHHHHHHHHHHHHc-CCEEEEEecCCC
Confidence 58899989997 444566777776654 6666554 5643
No 137
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=88.98 E-value=5.1 Score=34.44 Aligned_cols=102 Identities=19% Similarity=0.169 Sum_probs=59.6
Q ss_pred HHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCccc------CCCcHHHHHHHHHhCCCCeE
Q 025860 77 RRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVV------SGDSLLECASIAESCKRVVS 150 (247)
Q Consensus 77 ~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~------~G~~~~~~~~~~~~~~~~~a 150 (247)
++++.+++.|+|.+.+-|.. +.+...+.++.+.++ +..+++|+++.++.... .+.++.+.++.+.. .+++.
T Consensus 89 ~~~~~~~~~Ga~~v~iGs~~-~~~~~~~~~i~~~~g-~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~-~G~~~ 165 (241)
T PRK13585 89 EDAASLLDLGVDRVILGTAA-VENPEIVRELSEEFG-SERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEE-LGAGS 165 (241)
T ss_pred HHHHHHHHcCCCEEEEChHH-hhChHHHHHHHHHhC-CCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHH-cCCCE
Confidence 45666777999999887644 333344555555554 45688888876432221 24477778887766 46665
Q ss_pred EEEcCC---C--hhHHHHHHHHHHhhcCCCEEEEeCCC
Q 025860 151 VGINCT---P--PRFISGLILIIKKVTAKPILIYPNSG 183 (247)
Q Consensus 151 vG~NC~---~--p~~~~~~l~~l~~~~~~pl~vyPNaG 183 (247)
|-+.=. + ...-..+++.+.+..+.|+ +.++|
T Consensus 166 i~~~~~~~~g~~~g~~~~~i~~i~~~~~iPv--ia~GG 201 (241)
T PRK13585 166 ILFTNVDVEGLLEGVNTEPVKELVDSVDIPV--IASGG 201 (241)
T ss_pred EEEEeecCCCCcCCCCHHHHHHHHHhCCCCE--EEeCC
Confidence 443211 1 1111356777777777884 44554
No 138
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=88.93 E-value=9.9 Score=32.69 Aligned_cols=95 Identities=16% Similarity=0.147 Sum_probs=63.2
Q ss_pred hcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCC--ChhH
Q 025860 83 VESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT--PPRF 160 (247)
Q Consensus 83 ~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~--~p~~ 160 (247)
...++|++=+|-......++.+++.+++. +..+++|+.-. ..+.+-+.+.+.++.+.. .|++.+=+-+. +++.
T Consensus 89 ~~~~~d~vDiEl~~~~~~~~~l~~~~~~~--~~kvI~S~H~f--~~tp~~~~l~~~~~~~~~-~gaDivKia~~a~~~~D 163 (228)
T TIGR01093 89 DSPGPDFVDIELFLPDDAVKELINIAKKG--GTKIIMSYHDF--QKTPSWEEIVERLEKALS-YGADIVKIAVMANSKED 163 (228)
T ss_pred HhCCCCEEEEEccCCHHHHHHHHHHHHHC--CCEEEEeccCC--CCCCCHHHHHHHHHHHHH-hCCCEEEEEeccCCHHH
Confidence 45779999999766555556666655654 57899999732 223333445566666665 57888888885 5777
Q ss_pred HHHHHHHHHhh---cCCCEEEEeCC
Q 025860 161 ISGLILIIKKV---TAKPILIYPNS 182 (247)
Q Consensus 161 ~~~~l~~l~~~---~~~pl~vyPNa 182 (247)
...+++...+. .+.|++++.-+
T Consensus 164 ~~~ll~~~~~~~~~~~~p~i~~~MG 188 (228)
T TIGR01093 164 VLTLLEITNKVDEHADVPLITMSMG 188 (228)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 77777654332 45798888744
No 139
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=88.92 E-value=2.3 Score=38.33 Aligned_cols=65 Identities=14% Similarity=0.226 Sum_probs=46.0
Q ss_pred HHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcC
Q 025860 78 RVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINC 155 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC 155 (247)
|+...+++|+|.|++..|+ ++|++.+++.+++.+. .+.+-.+ .|-+++.+.+... .|+|.|.+--
T Consensus 211 ea~eal~~gaDiI~LDnm~-~e~vk~av~~~~~~~~--~v~ieaS--------GGI~~~ni~~yA~--tGvD~Is~ga 275 (289)
T PRK07896 211 QLDEVLAEGAELVLLDNFP-VWQTQEAVQRRDARAP--TVLLESS--------GGLTLDTAAAYAE--TGVDYLAVGA 275 (289)
T ss_pred HHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHhccCC--CEEEEEE--------CCCCHHHHHHHHh--cCCCEEEeCh
Confidence 4444567999999999988 9999999998776532 2333332 4677777777554 5889887654
No 140
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=88.87 E-value=8.7 Score=32.87 Aligned_cols=101 Identities=12% Similarity=0.065 Sum_probs=60.6
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEc
Q 025860 75 HRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGIN 154 (247)
Q Consensus 75 ~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~N 154 (247)
|.+.++.+++.|+|++=+|--. ......++.+++. +.++++|+.-.+. +++=..+.+.++.+.. .+++.+=+-
T Consensus 78 ~~~ll~~~~~~~~d~vDiEl~~--~~~~~~~~~~~~~--~~kiI~S~H~f~~--tp~~~~l~~~~~~~~~-~gadivKla 150 (225)
T cd00502 78 YLELLEEALKLGPDYVDIELDS--ALLEELINSRKKG--NTKIIGSYHDFSG--TPSDEELVSRLEKMAA-LGADIVKIA 150 (225)
T ss_pred HHHHHHHHHHHCCCEEEEEecc--hHHHHHHHHHHhC--CCEEEEEeccCCC--CcCHHHHHHHHHHHHH-hCCCEEEEE
Confidence 3334555566789999999543 3344444444433 6899999974322 1222334455555555 467877776
Q ss_pred CC--ChhHHHHHHHHHHhhc---CCCEEEEeCC
Q 025860 155 CT--PPRFISGLILIIKKVT---AKPILIYPNS 182 (247)
Q Consensus 155 C~--~p~~~~~~l~~l~~~~---~~pl~vyPNa 182 (247)
+. +++....+++...... +.|++++.-+
T Consensus 151 ~~~~~~~D~~~ll~~~~~~~~~~~~p~i~~~MG 183 (225)
T cd00502 151 VMANSIEDNLRLLKFTRQVKNLYDIPLIAINMG 183 (225)
T ss_pred ecCCCHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 65 5777777776554442 4688877643
No 141
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=88.85 E-value=21 Score=33.60 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=45.7
Q ss_pred HHHHHHHhcCCCCEEEEecC---------------CCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHH
Q 025860 76 RRRVQVLVESAPDLIAFETI---------------PNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECAS 140 (247)
Q Consensus 76 ~~q~~~l~~~gvD~i~~ET~---------------~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~ 140 (247)
.+.++.+.+.|+|+|=+-.- .+.+.+..+++.+++.. ++|+++-++- +-+.+.+.++
T Consensus 116 ~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~-~~Pv~vKl~p-------~~~~~~~~a~ 187 (420)
T PRK08318 116 KEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGS-RLPVIVKLTP-------NITDIREPAR 187 (420)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhcc-CCcEEEEcCC-------CcccHHHHHH
Confidence 33555555678998866421 34456677788887754 6899988862 2234777777
Q ss_pred HHHhCCCCeEEE-EcC
Q 025860 141 IAESCKRVVSVG-INC 155 (247)
Q Consensus 141 ~~~~~~~~~avG-~NC 155 (247)
.+.+ .++++|- +|-
T Consensus 188 ~~~~-~Gadgi~~~Nt 202 (420)
T PRK08318 188 AAKR-GGADAVSLINT 202 (420)
T ss_pred HHHH-CCCCEEEEecc
Confidence 7766 4787654 444
No 142
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=88.84 E-value=19 Score=33.34 Aligned_cols=118 Identities=15% Similarity=0.149 Sum_probs=78.3
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEc
Q 025860 75 HRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGIN 154 (247)
Q Consensus 75 ~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~N 154 (247)
-..|+..|.++|+|++= =|+|+.++++++-+..+.. ++|++.-+.|+. .-|+..+. .+++.|=+|
T Consensus 44 tv~Qi~~L~~aGceiVR-vav~~~~~a~al~~I~~~~--~iPlvADIHFd~----------~lAl~a~~--~G~~~iRIN 108 (360)
T PRK00366 44 TVAQIKRLARAGCEIVR-VAVPDMEAAAALPEIKKQL--PVPLVADIHFDY----------RLALAAAE--AGADALRIN 108 (360)
T ss_pred HHHHHHHHHHcCCCEEE-EccCCHHHHHhHHHHHHcC--CCCEEEecCCCH----------HHHHHHHH--hCCCEEEEC
Confidence 45599999999999987 4889999988877765554 699999888742 23444443 378888898
Q ss_pred CC---C-hhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHH
Q 025860 155 CT---P-PRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKW 211 (247)
Q Consensus 155 C~---~-p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 211 (247)
=. . .+.+.++++..++ .+.|+=+=-|+|.+...--..|- ..+|+.+.+.+.+.
T Consensus 109 PGNig~~~~~v~~vv~~ak~-~~ipIRIGvN~GSL~~~~~~~yg---~~t~eamveSAl~~ 165 (360)
T PRK00366 109 PGNIGKRDERVREVVEAAKD-YGIPIRIGVNAGSLEKDLLEKYG---EPTPEALVESALRH 165 (360)
T ss_pred CCCCCchHHHHHHHHHHHHH-CCCCEEEecCCccChHHHHHHcC---CCCHHHHHHHHHHH
Confidence 85 2 4566666666554 47887777788865221111121 13566666655444
No 143
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=88.52 E-value=3.8 Score=40.48 Aligned_cols=50 Identities=8% Similarity=0.101 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHH---hhCCCCcEEEEEEEcC
Q 025860 75 HRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLE---EENIKIPAWFSFNSKD 125 (247)
Q Consensus 75 ~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~---~~~~~~pv~is~~~~~ 125 (247)
--+|+..|.++|+|++= =|+|+.+|++++-+..+ +.+.++|++.-+.|+.
T Consensus 43 tv~Qi~~l~~aGceiVR-vtv~~~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~ 95 (611)
T PRK02048 43 CVAQAKRIIDAGGEYVR-LTTQGVREAENLMNINIGLRSQGYMVPLVADVHFNP 95 (611)
T ss_pred HHHHHHHHHHcCCCEEE-EcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCc
Confidence 44599999999999987 48899999987665433 3456799999998864
No 144
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=88.52 E-value=13 Score=33.96 Aligned_cols=134 Identities=15% Similarity=0.121 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEEecCC----CHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhC
Q 025860 70 TLKDFHRRRVQVLVESAPDLIAFETIP----NKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESC 145 (247)
Q Consensus 70 e~~~~~~~q~~~l~~~gvD~i~~ET~~----~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~ 145 (247)
.....-+..++...+.|+.+.+ -++. +. |.......+|+..++.|++.++-+..... .+-+.+..+++.+ +
T Consensus 67 ~~~~in~~La~~a~~~g~~~~~-Gs~~~~~~~~-~~~~~~~~vr~~~~~~p~i~nl~~~~~~~-~~~~~~~~~i~~i-~- 141 (333)
T TIGR02151 67 EAGKINRNLARAARELGIPMGV-GSQRAALKDP-ETADTFEVVREEAPNGPLIANIGAPQLVE-GGPEEAQEAIDMI-E- 141 (333)
T ss_pred hHHHHHHHHHHHHHHcCCCeEE-cCchhhccCh-hhHhHHHHHHHhCCCCcEEeecCchhhcc-ccHHHHHHHHHHh-c-
Confidence 3445556677777788877664 2332 22 23333366777555899999886532211 0112244555544 3
Q ss_pred CCCeEEEEcCCC----h------hHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcC
Q 025860 146 KRVVSVGINCTP----P------RFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVG 215 (247)
Q Consensus 146 ~~~~avG~NC~~----p------~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G 215 (247)
..+..|++||.. | +.....++.+++..+.|+++.-+... .+ .+.++.+.+.|
T Consensus 142 adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g--------------~~----~~~a~~L~~aG 203 (333)
T TIGR02151 142 ADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQLSVPVIVKEVGFG--------------IS----KEVAKLLADAG 203 (333)
T ss_pred CCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCC--------------CC----HHHHHHHHHcC
Confidence 356788888742 2 22346677777778999998854310 11 24556677788
Q ss_pred CeE--EeecCCCC
Q 025860 216 ASL--VGGCCRTT 226 (247)
Q Consensus 216 ~~i--IGGCCGt~ 226 (247)
++. |+|-.||+
T Consensus 204 vd~I~Vsg~gGt~ 216 (333)
T TIGR02151 204 VSAIDVAGAGGTS 216 (333)
T ss_pred CCEEEECCCCCCc
Confidence 766 56655654
No 145
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=88.47 E-value=20 Score=32.92 Aligned_cols=159 Identities=15% Similarity=0.114 Sum_probs=87.9
Q ss_pred CcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEe------------cCCCHHHHHHHHHHHHhhCCCCcEE
Q 025860 51 YLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFE------------TIPNKIEAQAYAELLEEENIKIPAW 118 (247)
Q Consensus 51 ~l~~g~eY~g~y~~~~s~~e~~~~~~~q~~~l~~~gvD~i~~E------------T~~~~~E~~aa~~~~~~~~~~~pv~ 118 (247)
+|.||. |..... .+.++..+ .++.|.++|||.|=+= -++...+.+ .++.+++...+.++.
T Consensus 10 TLRDG~-q~~~~~--f~~~~~~~----i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e-~i~~~~~~~~~~~~~ 81 (337)
T PRK08195 10 TLRDGM-HAVRHQ--YTLEQVRA----IARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEE-YIEAAAEVVKQAKIA 81 (337)
T ss_pred CCCCcC-cCCCCc--cCHHHHHH----HHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHH-HHHHHHHhCCCCEEE
Confidence 456665 333332 57777776 6667888999998331 111111222 223332221123333
Q ss_pred EEEEEcCCCcccCCCcHHHHHHHHHhCCCCeE--EEEcCCChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccC
Q 025860 119 FSFNSKDGVNVVSGDSLLECASIAESCKRVVS--VGINCTPPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQN 196 (247)
Q Consensus 119 is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~a--vG~NC~~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~ 196 (247)
+ |..... | .+.+ ++...+ .+++. |.+.|+..+.+.+.++..++. ...+.+++=. .
T Consensus 82 ~-ll~pg~-----~-~~~d-l~~a~~-~gvd~iri~~~~~e~~~~~~~i~~ak~~-G~~v~~~l~~-----a-------- 138 (337)
T PRK08195 82 A-LLLPGI-----G-TVDD-LKMAYD-AGVRVVRVATHCTEADVSEQHIGLAREL-GMDTVGFLMM-----S-------- 138 (337)
T ss_pred E-EeccCc-----c-cHHH-HHHHHH-cCCCEEEEEEecchHHHHHHHHHHHHHC-CCeEEEEEEe-----c--------
Confidence 2 211111 1 2333 333444 36665 668888777777787777654 3333332211 0
Q ss_pred CCCChHHHHHHHHHHHHcCCeEEeec--CC-CChHHHHHHHHHhhCC
Q 025860 197 TGVSDEDFVSYVSKWCEVGASLVGGC--CR-TTPNTIKGIYRTLSNR 240 (247)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~G~~iIGGC--CG-t~P~hI~al~~~l~~~ 240 (247)
...+++++.++++.+.+.|+..|.=| -| .+|+.++.+-+.+++.
T Consensus 139 ~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~ 185 (337)
T PRK08195 139 HMAPPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAA 185 (337)
T ss_pred cCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHh
Confidence 11358899999999999999987622 22 4899999887777643
No 146
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=88.39 E-value=6.2 Score=35.07 Aligned_cols=101 Identities=8% Similarity=0.016 Sum_probs=67.6
Q ss_pred HHHHHHhcCCCCEEEEecCCCHHH----HHHHHHHHHhhCCCCcEEEEEEEc--CCC-c-------ccCCCcHHHHHHHH
Q 025860 77 RRVQVLVESAPDLIAFETIPNKIE----AQAYAELLEEENIKIPAWFSFNSK--DGV-N-------VVSGDSLLECASIA 142 (247)
Q Consensus 77 ~q~~~l~~~gvD~i~~ET~~~~~E----~~aa~~~~~~~~~~~pv~is~~~~--~~~-~-------l~~G~~~~~~~~~~ 142 (247)
++++.+++.|||-+++-|.- +.. ...+-+++++++ +-.+++++.++ ++. + -.++.++.+.+..+
T Consensus 95 e~i~~~l~~Ga~rViigT~A-v~~~~~~p~~v~~~~~~~G-~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~ 172 (262)
T PLN02446 95 ENAMSYLDAGASHVIVTSYV-FRDGQIDLERLKDLVRLVG-KQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEF 172 (262)
T ss_pred HHHHHHHHcCCCEEEEchHH-HhCCCCCHHHHHHHHHHhC-CCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHH
Confidence 57888889999999998864 222 445556667775 46799999986 431 1 22566788876666
Q ss_pred HhCCCCeEEEEcCCChhHH-----HHHHHHHHhhcCCCEEEEe
Q 025860 143 ESCKRVVSVGINCTPPRFI-----SGLILIIKKVTAKPILIYP 180 (247)
Q Consensus 143 ~~~~~~~avG~NC~~p~~~-----~~~l~~l~~~~~~pl~vyP 180 (247)
.+ .++..|-++..+-+.+ ..+++.+.+..+.|+++--
T Consensus 173 ~~-~g~~eii~TdI~rDGtl~G~d~el~~~l~~~~~ipVIASG 214 (262)
T PLN02446 173 LA-AYCDEFLVHGVDVEGKRLGIDEELVALLGEHSPIPVTYAG 214 (262)
T ss_pred HH-hCCCEEEEEEEcCCCcccCCCHHHHHHHHhhCCCCEEEEC
Confidence 65 4577777776432211 5677788777888876543
No 147
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=88.34 E-value=8.9 Score=33.52 Aligned_cols=101 Identities=14% Similarity=0.124 Sum_probs=61.9
Q ss_pred HHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCc--------------ccCCCcHHHHHHHHH
Q 025860 78 RVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVN--------------VVSGDSLLECASIAE 143 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~--------------l~~G~~~~~~~~~~~ 143 (247)
.++.+...|+|.+++=|.. +.+...+-++.+.++ +-.+++|+.+.+... ...+..+.+.++.+.
T Consensus 88 d~~~~~~~Ga~~vivgt~~-~~~p~~~~~~~~~~~-~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~ 165 (254)
T TIGR00735 88 DVDKLLRAGADKVSINTAA-VKNPELIYELADRFG-SQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVE 165 (254)
T ss_pred HHHHHHHcCCCEEEEChhH-hhChHHHHHHHHHcC-CCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHH
Confidence 4444556799998876533 233344444455553 357888998864321 123566778888887
Q ss_pred hCCCCeEEEEcCCChh-----HHHHHHHHHHhhcCCCEEEEeCCC
Q 025860 144 SCKRVVSVGINCTPPR-----FISGLILIIKKVTAKPILIYPNSG 183 (247)
Q Consensus 144 ~~~~~~avG~NC~~p~-----~~~~~l~~l~~~~~~pl~vyPNaG 183 (247)
+ .+++.|-++..+.+ .-..+++.+.+..+.|+ +.+.|
T Consensus 166 ~-~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipv--ia~GG 207 (254)
T TIGR00735 166 K-LGAGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPV--IASGG 207 (254)
T ss_pred H-cCCCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCE--EEeCC
Confidence 6 58888888664321 12467777777777785 44444
No 148
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=88.34 E-value=5.7 Score=34.00 Aligned_cols=121 Identities=16% Similarity=0.192 Sum_probs=76.7
Q ss_pred HHHHhcCCCCEEEEec-CCC--------------HHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHH
Q 025860 79 VQVLVESAPDLIAFET-IPN--------------KIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAE 143 (247)
Q Consensus 79 ~~~l~~~gvD~i~~ET-~~~--------------~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~ 143 (247)
++.+.+.|+|.+-+-. +++ ++.++.+++.+++.+ ..+ .|.+.+..+. +-+.+.++++.+.
T Consensus 73 ~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g--~~v--~~~~~~~~~~-~~~~~~~~~~~~~ 147 (237)
T PF00682_consen 73 VEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELG--YEV--AFGCEDASRT-DPEELLELAEALA 147 (237)
T ss_dssp HHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTT--SEE--EEEETTTGGS-SHHHHHHHHHHHH
T ss_pred HHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcC--Cce--EeCccccccc-cHHHHHHHHHHHH
Confidence 3445668999886654 455 667777777788764 344 7777665554 2345566677676
Q ss_pred hCCCCeEEEEcCC----ChhHHHHHHHHHHhhcC-CCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeE
Q 025860 144 SCKRVVSVGINCT----PPRFISGLILIIKKVTA-KPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASL 218 (247)
Q Consensus 144 ~~~~~~avG~NC~----~p~~~~~~l~~l~~~~~-~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~i 218 (247)
+ .+++.|.+.=+ .|..+..+++.+++... .||.+....- +- + .++. +...+++|+++
T Consensus 148 ~-~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd---------~G----l---a~An-~laA~~aGa~~ 209 (237)
T PF00682_consen 148 E-AGADIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHND---------LG----L---AVAN-ALAALEAGADR 209 (237)
T ss_dssp H-HT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBT---------TS--------HHHH-HHHHHHTT-SE
T ss_pred H-cCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCC---------cc----c---hhHH-HHHHHHcCCCE
Confidence 6 48898888643 49999999999998866 7887766431 10 0 1333 34456789998
Q ss_pred Eeec
Q 025860 219 VGGC 222 (247)
Q Consensus 219 IGGC 222 (247)
|=++
T Consensus 210 id~t 213 (237)
T PF00682_consen 210 IDGT 213 (237)
T ss_dssp EEEB
T ss_pred EEcc
Confidence 7444
No 149
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=88.31 E-value=19 Score=32.58 Aligned_cols=142 Identities=13% Similarity=0.119 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHhcCCCCEE-EEecCC-----CHHHHHH--------HHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHH
Q 025860 71 LKDFHRRRVQVLVESAPDLI-AFETIP-----NKIEAQA--------YAELLEEENIKIPAWFSFNSKDGVNVVSGDSLL 136 (247)
Q Consensus 71 ~~~~~~~q~~~l~~~gvD~i-~~ET~~-----~~~E~~a--------a~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~ 136 (247)
+.+...+.++.+.++|+|+| +++... +.++.+. +++.+++. +.+.++-++ |.. .
T Consensus 178 i~~~~~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~--g~~~ilH~C---------G~~-~ 245 (340)
T TIGR01463 178 ALDFVIAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEI--GGITVLHIC---------GFT-Q 245 (340)
T ss_pred HHHHHHHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhc--CCceEEEEC---------CCc-h
Confidence 34556777788888999986 555332 3433332 23333333 234444332 211 2
Q ss_pred HHHHHHHhCCCCeEEEEcCC-ChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcC
Q 025860 137 ECASIAESCKRVVSVGINCT-PPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVG 215 (247)
Q Consensus 137 ~~~~~~~~~~~~~avG~NC~-~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G 215 (247)
..+..+.+ .+++++.+--. + +.. .++..+..+.++-|--.. ..... -++++..+.+++.++.|
T Consensus 246 ~~~~~l~~-~g~d~ls~d~~~~---l~~----~~~~~g~~~~i~Gnidp~------~ll~~--gt~eeI~~~v~~~l~~~ 309 (340)
T TIGR01463 246 PILRDIAN-NGCFGFSVDMKPG---MDH----AKRVIGGQASLVGNLSPF------STLMN--GTPEKVKKLAKEVLYNG 309 (340)
T ss_pred hhHHHHHH-hCCCEEeecCCCC---HHH----HHHHcCCceEEEecCChH------HHhcC--CCHHHHHHHHHHHHHcC
Confidence 23444555 46777664332 3 222 233333335566555210 01111 25888999999999988
Q ss_pred CeEEeecCC----CChHHHHHHHHHhhCC
Q 025860 216 ASLVGGCCR----TTPNTIKGIYRTLSNR 240 (247)
Q Consensus 216 ~~iIGGCCG----t~P~hI~al~~~l~~~ 240 (247)
.-|++--|| |-++.|++|.++++..
T Consensus 310 ~~Il~~gcgi~~~tp~eni~a~v~a~~~~ 338 (340)
T TIGR01463 310 GDIVMPGCDIDWMTPLENLKAMIEACKSI 338 (340)
T ss_pred CeEECCCCCCCCCCCHHHHHHHHHHHHhc
Confidence 889988887 5788999999887754
No 150
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=88.23 E-value=3.7 Score=41.22 Aligned_cols=50 Identities=20% Similarity=0.289 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHH---hhCCCCcEEEEEEEcC
Q 025860 75 HRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLE---EENIKIPAWFSFNSKD 125 (247)
Q Consensus 75 ~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~---~~~~~~pv~is~~~~~ 125 (247)
--+|+..|.++|+|++=+ |+++.+|++++-..-+ +.+.++|++.-+.|+.
T Consensus 112 tv~Qi~~l~~aGceiVRv-tv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~ 164 (733)
T PLN02925 112 TVDQVMRIADKGADIVRI-TVQGKKEADACFEIKNTLVQKGYNIPLVADIHFAP 164 (733)
T ss_pred HHHHHHHHHHcCCCEEEE-cCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCH
Confidence 445999999999999874 8899999887655433 3455799999998863
No 151
>PRK15063 isocitrate lyase; Provisional
Probab=88.21 E-value=24 Score=33.57 Aligned_cols=132 Identities=12% Similarity=0.135 Sum_probs=80.3
Q ss_pred HHHHHhcCCCCEEEEecCC---------------CHHHHHHHHHHHHhh--CCCCcEEEEEEEcCC--------------
Q 025860 78 RVQVLVESAPDLIAFETIP---------------NKIEAQAYAELLEEE--NIKIPAWFSFNSKDG-------------- 126 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~---------------~~~E~~aa~~~~~~~--~~~~pv~is~~~~~~-------------- 126 (247)
.++.++++||-.|-||-+- +.+|...=+.+++.. -.+.|++|---.+..
T Consensus 166 ~vk~~ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~AAr~A~d~~g~~~vIiARTDA~aa~li~s~~d~rD~ 245 (428)
T PRK15063 166 LMKAMIEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVAARLAADVMGVPTLVIARTDAEAADLLTSDVDERDR 245 (428)
T ss_pred HHHHHHHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHHHHHHHHhcCCCeEEEEECCcccccccccccccccc
Confidence 5788889999999999862 233333333333321 114565554333221
Q ss_pred -----CcccCC-----CcHHHHHHHHHh-CCCCeEEEEcCC--ChhHHHHHHHHHHhhcCCC--EEEEeCCCCccccccc
Q 025860 127 -----VNVVSG-----DSLLECASIAES-CKRVVSVGINCT--PPRFISGLILIIKKVTAKP--ILIYPNSGEFYDADRK 191 (247)
Q Consensus 127 -----~~l~~G-----~~~~~~~~~~~~-~~~~~avG~NC~--~p~~~~~~l~~l~~~~~~p--l~vyPNaG~~~d~~~~ 191 (247)
.++..| ..++++++.... ..++|.|=+-.. +++.+..+.+.+.. ..| +++|+.+.. -
T Consensus 246 ~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~GAD~iw~Et~~~d~ee~~~fa~~v~~--~~P~~~layn~sPs------f 317 (428)
T PRK15063 246 PFITGERTAEGFYRVKAGIEQAIARGLAYAPYADLIWCETSTPDLEEARRFAEAIHA--KFPGKLLAYNCSPS------F 317 (428)
T ss_pred ccccCCCccccccccccCHHHHHHHHHHHhcCCCEEEeCCCCCCHHHHHHHHHhhcc--cCccceeecCCCCC------c
Confidence 123333 468888887763 237888877653 56666666666542 236 777744322 2
Q ss_pred ccccCCCCChHHHHHHHHHHHHcCCeEE
Q 025860 192 EWVQNTGVSDEDFVSYVSKWCEVGASLV 219 (247)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~G~~iI 219 (247)
.|... ++++.+..|.+++.+.|..++
T Consensus 318 nW~~~--~~~~~~~~f~~eL~~~Gy~~~ 343 (428)
T PRK15063 318 NWKKN--LDDATIAKFQRELGAMGYKFQ 343 (428)
T ss_pred ccccc--cCHHHHHHHHHHHHHcCceEE
Confidence 56433 678899999999999997664
No 152
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=88.00 E-value=4.1 Score=36.88 Aligned_cols=60 Identities=12% Similarity=0.077 Sum_probs=38.8
Q ss_pred CCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCCCh------------hHHHHHHHHHHhhcCCCEEEE
Q 025860 114 KIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTPP------------RFISGLILIIKKVTAKPILIY 179 (247)
Q Consensus 114 ~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~~p------------~~~~~~l~~l~~~~~~pl~vy 179 (247)
+.|+++|+...+. +...+.++.+.+...+++|=+|+++| +.+.++++.+++..++|+++.
T Consensus 92 ~~pvI~Si~G~~~------~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~~~Pv~vK 163 (310)
T PRK02506 92 NKPHFLSVVGLSP------EETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYFTKPLGVK 163 (310)
T ss_pred CCCEEEEEEeCcH------HHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhcCCccEEe
Confidence 5899999853221 12234444444432389999999754 567777888887778887743
No 153
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=87.93 E-value=2.9 Score=37.37 Aligned_cols=66 Identities=8% Similarity=0.097 Sum_probs=44.9
Q ss_pred HHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcC
Q 025860 77 RRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINC 155 (247)
Q Consensus 77 ~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC 155 (247)
+++...+++|+|+|.++++ ++++++.+++..+...+ .+.+-.+ .|-+++.+.+.+. .|+|.|.+-.
T Consensus 193 eea~~A~~~GaDiI~LDn~-~~e~l~~~v~~~~~~~~--~~~ieAs--------GgIt~~ni~~ya~--~GvD~IsvG~ 258 (273)
T PRK05848 193 EEAKNAMNAGADIVMCDNM-SVEEIKEVVAYRNANYP--HVLLEAS--------GNITLENINAYAK--SGVDAISSGS 258 (273)
T ss_pred HHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhhccCC--CeEEEEE--------CCCCHHHHHHHHH--cCCCEEEeCh
Confidence 3455566799999999996 69999999987654221 2222221 4677777777554 5889887766
No 154
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=87.93 E-value=2.1 Score=38.70 Aligned_cols=42 Identities=19% Similarity=0.246 Sum_probs=33.9
Q ss_pred HHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEE
Q 025860 77 RRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNS 123 (247)
Q Consensus 77 ~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~ 123 (247)
+|+++..++|+|+|++|...+.+|++.+.+.+ +.|++.++..
T Consensus 169 ~Ra~aY~eAGAD~ifi~~~~~~~ei~~~~~~~-----~~P~~~nv~~ 210 (294)
T TIGR02319 169 RRSREYVAAGADCIFLEAMLDVEEMKRVRDEI-----DAPLLANMVE 210 (294)
T ss_pred HHHHHHHHhCCCEEEecCCCCHHHHHHHHHhc-----CCCeeEEEEe
Confidence 38888999999999999999999988766643 3688777754
No 155
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=87.77 E-value=6.5 Score=36.36 Aligned_cols=136 Identities=13% Similarity=0.080 Sum_probs=74.9
Q ss_pred HHHHHhcCCCCEEEEecC----------CCHHHHHHHHHHHHhhCCCCcEEEEEEEc-CCCcccCCCcHHHHHHHHHhCC
Q 025860 78 RVQVLVESAPDLIAFETI----------PNKIEAQAYAELLEEENIKIPAWFSFNSK-DGVNVVSGDSLLECASIAESCK 146 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~----------~~~~E~~aa~~~~~~~~~~~pv~is~~~~-~~~~l~~G~~~~~~~~~~~~~~ 146 (247)
.++.+++.|+|.+.+=-- .+..|++.+++.+.+.+ +.+++.+... -+. .-..+.+.+..+.+ .
T Consensus 18 ~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~g--kk~~V~~N~~~~~~---~~~~~~~~l~~l~e-~ 91 (347)
T COG0826 18 DLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAG--KKVYVAVNTLLHND---ELETLERYLDRLVE-L 91 (347)
T ss_pred HHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcC--CeEEEEeccccccc---hhhHHHHHHHHHHH-c
Confidence 344466789999977522 45778999999999885 5666655421 111 11235677887877 6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHhhcCCC--EEEEeCCCCc-----ccc-cccccccCCCCChHHHHHHHHHH--HHcCC
Q 025860 147 RVVSVGINCTPPRFISGLILIIKKVTAKP--ILIYPNSGEF-----YDA-DRKEWVQNTGVSDEDFVSYVSKW--CEVGA 216 (247)
Q Consensus 147 ~~~avG~NC~~p~~~~~~l~~l~~~~~~p--l~vyPNaG~~-----~d~-~~~~~~~~~~~~~~~~~~~~~~~--~~~G~ 216 (247)
++|+|-++ +|-. ..++++. ..+.| +..+.|.-.. |.. ...+|...+.++-++..+-.++. ++.=+
T Consensus 92 GvDaviv~--Dpg~-i~l~~e~--~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~rEls~~ei~~i~~~~~~veiEv 166 (347)
T COG0826 92 GVDAVIVA--DPGL-IMLARER--GPDLPIHVSTQANVTNAETAKFWKELGAKRVVLPRELSLEEIKEIKEQTPDVEIEV 166 (347)
T ss_pred CCCEEEEc--CHHH-HHHHHHh--CCCCcEEEeeeEecCCHHHHHHHHHcCCEEEEeCccCCHHHHHHHHHhCCCceEEE
Confidence 89998876 3332 2333322 23455 4666665321 111 12333333334555555544443 33335
Q ss_pred eEEeecCC
Q 025860 217 SLVGGCCR 224 (247)
Q Consensus 217 ~iIGGCCG 224 (247)
-+-|+||=
T Consensus 167 fVhGalci 174 (347)
T COG0826 167 FVHGALCI 174 (347)
T ss_pred EEecchhh
Confidence 56677764
No 156
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=87.72 E-value=14 Score=31.51 Aligned_cols=115 Identities=15% Similarity=0.135 Sum_probs=66.1
Q ss_pred HHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEE---c
Q 025860 78 RVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGI---N 154 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~---N 154 (247)
|++...++|+|++.. |...+ .++++.+.. +.+++.+ -.+++++.+... .+++.|++ +
T Consensus 75 ~~~~a~~aGA~fivs---p~~~~--~v~~~~~~~--~~~~~~G-----------~~t~~E~~~A~~--~Gad~vk~Fpa~ 134 (206)
T PRK09140 75 QVDRLADAGGRLIVT---PNTDP--EVIRRAVAL--GMVVMPG-----------VATPTEAFAALR--AGAQALKLFPAS 134 (206)
T ss_pred HHHHHHHcCCCEEEC---CCCCH--HHHHHHHHC--CCcEEcc-----------cCCHHHHHHHHH--cCCCEEEECCCC
Confidence 566677788888874 22221 223334443 4566644 345677666543 47898888 4
Q ss_pred CCChhHHHHHHHHHHhhc--CCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEEeecCCCCh-----
Q 025860 155 CTPPRFISGLILIIKKVT--AKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCRTTP----- 227 (247)
Q Consensus 155 C~~p~~~~~~l~~l~~~~--~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iIGGCCGt~P----- 227 (247)
..+|+. ++.++... +.|+ +|=+| +++ +.+.+|++.|+..++..-....
T Consensus 135 ~~G~~~----l~~l~~~~~~~ipv--vaiGG---------------I~~----~n~~~~~~aGa~~vav~s~l~~~~~~~ 189 (206)
T PRK09140 135 QLGPAG----IKALRAVLPPDVPV--FAVGG---------------VTP----ENLAPYLAAGAAGFGLGSALYRPGQSA 189 (206)
T ss_pred CCCHHH----HHHHHhhcCCCCeE--EEECC---------------CCH----HHHHHHHHCCCeEEEEehHhcccccCh
Confidence 445554 34443332 3553 44333 334 4556699999998887766554
Q ss_pred HHHHHHHHHh
Q 025860 228 NTIKGIYRTL 237 (247)
Q Consensus 228 ~hI~al~~~l 237 (247)
+.|++.++.+
T Consensus 190 ~~i~~~a~~~ 199 (206)
T PRK09140 190 EEVAERARAF 199 (206)
T ss_pred HHHHHHHHHH
Confidence 6677665554
No 157
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=87.64 E-value=16 Score=33.49 Aligned_cols=110 Identities=12% Similarity=0.064 Sum_probs=66.3
Q ss_pred CCHHH---HHHHHHHHHHHHhcCCCCEEEEec------------CCC-------------HHHHHHHHHHHHhh-CCCCc
Q 025860 66 ITVET---LKDFHRRRVQVLVESAPDLIAFET------------IPN-------------KIEAQAYAELLEEE-NIKIP 116 (247)
Q Consensus 66 ~s~~e---~~~~~~~q~~~l~~~gvD~i~~ET------------~~~-------------~~E~~aa~~~~~~~-~~~~p 116 (247)
.|.+| +.+.|..-++.+.++|.|.+=+=. ..+ ..-+..+++.+|+. +.+.+
T Consensus 127 mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~ 206 (353)
T cd02930 127 LSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFI 206 (353)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCce
Confidence 45544 566788888888889999996633 112 44555667777764 33445
Q ss_pred EEEEEEEcCCCcccCCCcHHHHHHHH---HhCCCCeEEEEcCC---Chh----------HHHHHHHHHHhhcCCCEEE
Q 025860 117 AWFSFNSKDGVNVVSGDSLLECASIA---ESCKRVVSVGINCT---PPR----------FISGLILIIKKVTAKPILI 178 (247)
Q Consensus 117 v~is~~~~~~~~l~~G~~~~~~~~~~---~~~~~~~avG~NC~---~p~----------~~~~~l~~l~~~~~~pl~v 178 (247)
+.+-+...+ ....|.+++++++.+ .+ .++|.|=+... .+. ......+.+++..+.||++
T Consensus 207 v~iRi~~~D--~~~~g~~~~e~~~i~~~Le~-~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~ 281 (353)
T cd02930 207 IIYRLSMLD--LVEGGSTWEEVVALAKALEA-AGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIA 281 (353)
T ss_pred EEEEecccc--cCCCCCCHHHHHHHHHHHHH-cCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEE
Confidence 555554333 223567777665544 44 47777766432 110 1345667788888899766
No 158
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=87.29 E-value=9.7 Score=31.70 Aligned_cols=113 Identities=16% Similarity=0.166 Sum_probs=68.8
Q ss_pred HHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcC
Q 025860 76 RRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINC 155 (247)
Q Consensus 76 ~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC 155 (247)
.++++.+.+.|+|++.. |... ..+++..++. +.|+++.. .+++++.+.+. .+++.|++-=
T Consensus 66 ~~~~~~a~~~Ga~~i~~---p~~~--~~~~~~~~~~--~~~~i~gv-----------~t~~e~~~A~~--~Gad~i~~~p 125 (190)
T cd00452 66 PEQADAAIAAGAQFIVS---PGLD--PEVVKAANRA--GIPLLPGV-----------ATPTEIMQALE--LGADIVKLFP 125 (190)
T ss_pred HHHHHHHHHcCCCEEEc---CCCC--HHHHHHHHHc--CCcEECCc-----------CCHHHHHHHHH--CCCCEEEEcC
Confidence 45777788899999973 2221 3455555554 46766432 37788877654 5899999853
Q ss_pred CChhHHHHHHHHHHhhc-CCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEEeecCCCChHHH
Q 025860 156 TPPRFISGLILIIKKVT-AKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCRTTPNTI 230 (247)
Q Consensus 156 ~~p~~~~~~l~~l~~~~-~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iIGGCCGt~P~hI 230 (247)
..+. -...++.++... ..|+ .|=+| +++ +.+.+|++.|+..|+.+.....+.+
T Consensus 126 ~~~~-g~~~~~~l~~~~~~~p~--~a~GG---------------I~~----~n~~~~~~~G~~~v~v~s~i~~~~~ 179 (190)
T cd00452 126 AEAV-GPAYIKALKGPFPQVRF--MPTGG---------------VSL----DNAAEWLAAGVVAVGGGSLLPKDAV 179 (190)
T ss_pred Cccc-CHHHHHHHHhhCCCCeE--EEeCC---------------CCH----HHHHHHHHCCCEEEEEchhcchhhh
Confidence 3332 345566665432 2342 22222 344 4556699999999998888775443
No 159
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=87.13 E-value=12 Score=38.47 Aligned_cols=93 Identities=16% Similarity=0.138 Sum_probs=67.8
Q ss_pred hcCCCCEE-EEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcH------HHHHHHHHhCCCCeEEEEcC
Q 025860 83 VESAPDLI-AFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSL------LECASIAESCKRVVSVGINC 155 (247)
Q Consensus 83 ~~~gvD~i-~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~------~~~~~~~~~~~~~~avG~NC 155 (247)
.++|+|+| +|..+.+++.++.+++++++.+ +-+=++++.. +..|..+.+. .+.++.+.+ .|+..+||-=
T Consensus 640 a~~GIDvFRiFDsLNwv~~M~vaidAV~e~g--kv~EatiCYT-GDildp~r~kY~L~YY~~lA~el~~-~GaHIlaIKD 715 (1149)
T COG1038 640 AKSGIDVFRIFDSLNWVEQMRVAIDAVREAG--KVAEATICYT-GDILDPGRKKYTLDYYVKLAKELEK-AGAHILAIKD 715 (1149)
T ss_pred HhcCccEEEeehhhcchhhhhhHHHHHHhcC--CeEEEEEEec-cccCCCCcccccHHHHHHHHHHHHh-cCCcEEEehh
Confidence 36899998 8899999999999999999985 3333444332 2333344332 245666665 5889999987
Q ss_pred C----ChhHHHHHHHHHHhhcCCCEEEE
Q 025860 156 T----PPRFISGLILIIKKVTAKPILIY 179 (247)
Q Consensus 156 ~----~p~~~~~~l~~l~~~~~~pl~vy 179 (247)
- .|.....|+..|++..+.|+=+.
T Consensus 716 MAGLLKP~AA~~Li~aLr~~~dlPIHlH 743 (1149)
T COG1038 716 MAGLLKPAAAYRLISALRETVDLPIHLH 743 (1149)
T ss_pred hhhccCHHHHHHHHHHHHHhcCCceEEe
Confidence 3 48999999999999999997543
No 160
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=87.12 E-value=1.8 Score=40.03 Aligned_cols=80 Identities=18% Similarity=0.236 Sum_probs=52.8
Q ss_pred HHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHh---hCCCCcEEEEEEEcC----------------CCcc--------
Q 025860 77 RRVQVLVESAPDLIAFETIPNKIEAQAYAELLEE---ENIKIPAWFSFNSKD----------------GVNV-------- 129 (247)
Q Consensus 77 ~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~---~~~~~pv~is~~~~~----------------~~~l-------- 129 (247)
.|+..|.++|+|++=+ |+|+.++++++-+..+. .+.+.|++.-+.|+. .|.+
T Consensus 35 ~QI~~L~~aGceivRv-avp~~~~a~al~~I~~~l~~~g~~iPlVADIHFd~~lAl~a~~~v~kiRINPGNi~~~~~~~~ 113 (359)
T PF04551_consen 35 AQIKRLEEAGCEIVRV-AVPDMEAAEALKEIKKRLRALGSPIPLVADIHFDYRLALEAIEAVDKIRINPGNIVDEFQEEL 113 (359)
T ss_dssp HHHHHHHHCT-SEEEE-EE-SHHHHHHHHHHHHHHHCTT-SS-EEEEESTTCHHHHHHHHC-SEEEE-TTTSS----SS-
T ss_pred HHHHHHHHcCCCEEEE-cCCCHHHHHHHHHHHHhhccCCCCCCeeeecCCCHHHHHHHHHHhCeEEECCCcccccccccc
Confidence 4999999999999874 78999998887765554 344799999998873 1222
Q ss_pred cC-CCcHHHHHHHHHhCCCCeEEEEcCCC
Q 025860 130 VS-GDSLLECASIAESCKRVVSVGINCTP 157 (247)
Q Consensus 130 ~~-G~~~~~~~~~~~~~~~~~avG~NC~~ 157 (247)
-+ -+.+.++++.+++..-+.=||+|..+
T Consensus 114 g~~~~~~~~vv~~ake~~ipIRIGvN~GS 142 (359)
T PF04551_consen 114 GSIREKVKEVVEAAKERGIPIRIGVNSGS 142 (359)
T ss_dssp SS-HHHHHHHHHHHHHHT-EEEEEEEGGG
T ss_pred cchHHHHHHHHHHHHHCCCCEEEeccccc
Confidence 11 12355666666664456779999974
No 161
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=87.09 E-value=18 Score=30.98 Aligned_cols=78 Identities=14% Similarity=0.044 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEe-cCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhC
Q 025860 67 TVETLKDFHRRRVQVLVESAPDLIAFE-TIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESC 145 (247)
Q Consensus 67 s~~e~~~~~~~q~~~l~~~gvD~i~~E-T~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~ 145 (247)
+.++..+ .++.|.+.|+|+| | |+.+. +...+++.+++..+++-+-+-.. + +.+++- ...+
T Consensus 25 ~~~~a~~----i~~al~~~Gi~~i--Eitl~~~-~~~~~I~~l~~~~p~~~IGAGTV------l----~~~~a~-~a~~- 85 (212)
T PRK05718 25 KLEDAVP----LAKALVAGGLPVL--EVTLRTP-AALEAIRLIAKEVPEALIGAGTV------L----NPEQLA-QAIE- 85 (212)
T ss_pred CHHHHHH----HHHHHHHcCCCEE--EEecCCc-cHHHHHHHHHHHCCCCEEEEeec------c----CHHHHH-HHHH-
Confidence 4555555 7888888899976 6 55544 55555666665432322222111 1 113333 3333
Q ss_pred CCCeEEEEcCCChhHHHH
Q 025860 146 KRVVSVGINCTPPRFISG 163 (247)
Q Consensus 146 ~~~~avG~NC~~p~~~~~ 163 (247)
.|++-+-.-+..++.+..
T Consensus 86 aGA~FivsP~~~~~vi~~ 103 (212)
T PRK05718 86 AGAQFIVSPGLTPPLLKA 103 (212)
T ss_pred cCCCEEECCCCCHHHHHH
Confidence 467766666666644333
No 162
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=86.92 E-value=8.9 Score=33.16 Aligned_cols=97 Identities=8% Similarity=-0.089 Sum_probs=61.2
Q ss_pred HHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCc--ccCCCcHHHHHHHHHhCCCCeEEEEc
Q 025860 77 RRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVN--VVSGDSLLECASIAESCKRVVSVGIN 154 (247)
Q Consensus 77 ~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~--l~~G~~~~~~~~~~~~~~~~~avG~N 154 (247)
++++.+++.|+|-+++-|.. +.. ..+-+++++++ +-.+++|+.++++.. ..++.++.+.++.+.. . +..+-++
T Consensus 91 edv~~~l~~Ga~~viigt~~-~~~-~~~~~~~~~~~-~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~li~~ 165 (233)
T cd04723 91 ENAQEWLKRGASRVIVGTET-LPS-DDDEDRLAALG-EQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAK-W-PEELIVL 165 (233)
T ss_pred HHHHHHHHcCCCeEEEccee-ccc-hHHHHHHHhcC-CCCeEEEEeccCCeeccccCcCCHHHHHHHHHH-h-CCeEEEE
Confidence 56777788999988887655 333 55666777775 337999999876421 2467889999998876 3 5433333
Q ss_pred CC---Ch--hHHHHHHHHHHhhcCCCEEE
Q 025860 155 CT---PP--RFISGLILIIKKVTAKPILI 178 (247)
Q Consensus 155 C~---~p--~~~~~~l~~l~~~~~~pl~v 178 (247)
-. +. ..-..+++.+.+..+.|+++
T Consensus 166 di~~~G~~~g~~~~~~~~i~~~~~ipvi~ 194 (233)
T cd04723 166 DIDRVGSGQGPDLELLERLAARADIPVIA 194 (233)
T ss_pred EcCccccCCCcCHHHHHHHHHhcCCCEEE
Confidence 32 10 11135666666666777543
No 163
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=86.87 E-value=22 Score=31.67 Aligned_cols=159 Identities=14% Similarity=0.167 Sum_probs=92.2
Q ss_pred HHHHHHHHhcCCCCEEEEe----------------------cCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCC
Q 025860 75 HRRRVQVLVESAPDLIAFE----------------------TIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSG 132 (247)
Q Consensus 75 ~~~q~~~l~~~gvD~i~~E----------------------T~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G 132 (247)
..+.++.|.++|+|+|=+- --.++.....+++.+++.+.+.|+++-...+. ....|
T Consensus 33 s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Np--i~~~G 110 (265)
T COG0159 33 SLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNP--IFNYG 110 (265)
T ss_pred HHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccH--HHHhh
Confidence 3347888999999998221 11223333344555565556789887665533 23344
Q ss_pred CcHHHHHHHHHhCCCCeEEEEcCCChhHHHHHHHHHHhhcCCC-EEEEeCCCC--c----ccccccccc-cC------CC
Q 025860 133 DSLLECASIAESCKRVVSVGINCTPPRFISGLILIIKKVTAKP-ILIYPNSGE--F----YDADRKEWV-QN------TG 198 (247)
Q Consensus 133 ~~~~~~~~~~~~~~~~~avG~NC~~p~~~~~~l~~l~~~~~~p-l~vyPNaG~--~----~d~~~~~~~-~~------~~ 198 (247)
+++.++.+.+ .|++++-+-=-.++....+.+..+++.=.| .++-||... . .....-.|. +. +.
T Consensus 111 --ie~F~~~~~~-~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~ 187 (265)
T COG0159 111 --IEKFLRRAKE-AGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGVTGARN 187 (265)
T ss_pred --HHHHHHHHHH-cCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEecccccCCCc
Confidence 3667777777 589998887777787777777766542223 467888752 1 000001111 11 01
Q ss_pred CChHHHHHHHHHHHH-cCCeEEeecCCCChHHHHHHHHHhh
Q 025860 199 VSDEDFVSYVSKWCE-VGASLVGGCCRTTPNTIKGIYRTLS 238 (247)
Q Consensus 199 ~~~~~~~~~~~~~~~-~G~~iIGGCCGt~P~hI~al~~~l~ 238 (247)
.......+.+++.++ .++.++=|=.=.+|+|.+.+.+.-+
T Consensus 188 ~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~AD 228 (265)
T COG0159 188 PVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEAAD 228 (265)
T ss_pred ccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHhCC
Confidence 111224455555544 2666666666689999999987743
No 164
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=86.85 E-value=24 Score=32.60 Aligned_cols=136 Identities=13% Similarity=0.186 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcC--CC---c---ccCCCcHHHH
Q 025860 67 TVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKD--GV---N---VVSGDSLLEC 138 (247)
Q Consensus 67 s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~--~~---~---l~~G~~~~~~ 138 (247)
+.+.+.++ +..+...+..++|.|++--.--+... .... .+.++|+.+.... .. + +....++
T Consensus 44 ~~~~l~~~-K~lv~~~l~~~asaILld~~yG~~a~------~~~~-~~~GLil~~e~tg~d~t~~gr~~~~~~~~sv--- 112 (340)
T PRK12858 44 SYTDLVDF-KLAVSEALTPYASAILLDPEYGLPAA------KVRD-PNCGLLLSYEKTGYDATAPGRLPDLLDNWSV--- 112 (340)
T ss_pred chhhHHHH-HHHHHHHHhhCCCEEEEccccChhhh------cccC-CCCCeEEEecccccccCCCCCCccccccccH---
Confidence 44455554 44555555578999997421111111 1111 3678999975311 11 1 1122233
Q ss_pred HHHHHhCCCCeEEEEcCC-Chh-------HHHHHHHHHHh---hcCCCEEE----EeCCCCcccccccccccCCCCChHH
Q 025860 139 ASIAESCKRVVSVGINCT-PPR-------FISGLILIIKK---VTAKPILI----YPNSGEFYDADRKEWVQNTGVSDED 203 (247)
Q Consensus 139 ~~~~~~~~~~~avG~NC~-~p~-------~~~~~l~~l~~---~~~~pl~v----yPNaG~~~d~~~~~~~~~~~~~~~~ 203 (247)
+.+.. .|+++|.+.+- +|+ .+...|.++.. ..+.|+++ ||-.+...+. ..|.. ..|+.
T Consensus 113 -e~a~~-~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~--~~~a~---~~p~~ 185 (340)
T PRK12858 113 -RRIKE-AGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKA--EEFAK---VKPEK 185 (340)
T ss_pred -HHHHH-cCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCcccccc--ccccc---cCHHH
Confidence 33444 57888888774 333 33444544433 25889655 5554332111 22321 35888
Q ss_pred HHHHHHHHHH--cCCeEEe
Q 025860 204 FVSYVSKWCE--VGASLVG 220 (247)
Q Consensus 204 ~~~~~~~~~~--~G~~iIG 220 (247)
....++.+.+ +|+.|+=
T Consensus 186 V~~a~r~~~~~elGaDvlK 204 (340)
T PRK12858 186 VIKTMEEFSKPRYGVDVLK 204 (340)
T ss_pred HHHHHHHHhhhccCCeEEE
Confidence 8999999995 9998875
No 165
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=86.76 E-value=14 Score=32.26 Aligned_cols=93 Identities=10% Similarity=0.034 Sum_probs=56.8
Q ss_pred HHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCC---------cccCCCcHHHHHHHHHh--CC
Q 025860 78 RVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGV---------NVVSGDSLLECASIAES--CK 146 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~---------~l~~G~~~~~~~~~~~~--~~ 146 (247)
-++.|.++|++.+-+|-.. |....++.+++. ..||+.-....... ..++-..++++++..+. ..
T Consensus 94 ~~~~l~~aGa~gv~iED~~---~~~~~i~ai~~a--~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~A 168 (240)
T cd06556 94 LAKTFMRAGAAGVKIEGGE---WHIETLQMLTAA--AVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPA 168 (240)
T ss_pred HHHHHHHcCCcEEEEcCcH---HHHHHHHHHHHc--CCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHc
Confidence 4566777999999999864 555566777765 36666555432211 11112345566655432 25
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHhhcCCCEEEE
Q 025860 147 RVVSVGINCTPPRFISGLILIIKKVTAKPILIY 179 (247)
Q Consensus 147 ~~~avG~NC~~p~~~~~~l~~l~~~~~~pl~vy 179 (247)
|+++|=+-|.+++. ++++.+..+.|++..
T Consensus 169 GAd~i~~e~~~~e~----~~~i~~~~~~P~~~~ 197 (240)
T cd06556 169 GADLIVMECVPVEL----AKQITEALAIPLAGI 197 (240)
T ss_pred CCCEEEEcCCCHHH----HHHHHHhCCCCEEEE
Confidence 89999999885444 444555568897664
No 166
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=86.76 E-value=27 Score=32.56 Aligned_cols=144 Identities=15% Similarity=0.143 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEecC-----------CC-----------HHHHHHHHHHHHhhCCCCcEEEEEEEc-
Q 025860 68 VETLKDFHRRRVQVLVESAPDLIAFETI-----------PN-----------KIEAQAYAELLEEENIKIPAWFSFNSK- 124 (247)
Q Consensus 68 ~~e~~~~~~~q~~~l~~~gvD~i~~ET~-----------~~-----------~~E~~aa~~~~~~~~~~~pv~is~~~~- 124 (247)
.++..++|+++++ .|+-+|+.|-. ++ +...+.+.+++++. +.++++++.-.
T Consensus 34 t~~~~~yy~~rA~----gG~GlIi~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~k~l~davh~~--G~~i~~QL~H~~ 107 (382)
T cd02931 34 NQRGIDYYVERAK----GGTGLIITGVTMVDNEIEQFPMPSLPCPTYNPTAFIRTAKEMTERVHAY--GTKIFLQLTAGF 107 (382)
T ss_pred CHHHHHHHHHHhc----CCCCEEEEEEEEeCCcccccCCCCccccccCCHHHhHHHHHHHHHHHHc--CCEEEEEccCcC
Confidence 3688889998875 67888887721 11 12345566677765 46778777421
Q ss_pred CC---C---------------------cc---cCCCcHHH-------HHHHHHhCCCCeEEEEcCCC-------------
Q 025860 125 DG---V---------------------NV---VSGDSLLE-------CASIAESCKRVVSVGINCTP------------- 157 (247)
Q Consensus 125 ~~---~---------------------~l---~~G~~~~~-------~~~~~~~~~~~~avG~NC~~------------- 157 (247)
.. . .. .+-+.+.+ +++.+.+ .|.|+|-|||.+
T Consensus 108 Gr~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~ra~~-AGfDgVEih~ah~GyLl~qFLSp~~ 186 (382)
T cd02931 108 GRVCIPGFLGEDKPVAPSPIPNRWLPEITCRELTTEEVETFVGKFGESAVIAKE-AGFDGVEIHAVHEGYLLDQFTISLF 186 (382)
T ss_pred CCccCccccCCCCccCCCCCCCCcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEEeccccChHHHHhcCCcc
Confidence 10 0 00 01111222 2333334 599999999853
Q ss_pred --------------hhHHHHHHHHHHhhc--CCCEEEEeCCCCccccc------ccccccCCCCChHHHHHHHHHHHHcC
Q 025860 158 --------------PRFISGLILIIKKVT--AKPILIYPNSGEFYDAD------RKEWVQNTGVSDEDFVSYVSKWCEVG 215 (247)
Q Consensus 158 --------------p~~~~~~l~~l~~~~--~~pl~vyPNaG~~~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~G 215 (247)
...+.++|+.+++.. +.||++.-|........ ..++. ....++++..+.++.+.+.|
T Consensus 187 N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~-~~g~~~e~~~~~~~~l~~~g 265 (382)
T cd02931 187 NKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQ-EKGRDLEEGLKAAKILEEAG 265 (382)
T ss_pred CCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccc-cCCCCHHHHHHHHHHHHHhC
Confidence 134556677777765 46888877753211000 00121 12356788888888888889
Q ss_pred CeEE
Q 025860 216 ASLV 219 (247)
Q Consensus 216 ~~iI 219 (247)
+.+|
T Consensus 266 vD~l 269 (382)
T cd02931 266 YDAL 269 (382)
T ss_pred CCEE
Confidence 8877
No 167
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=86.73 E-value=4.7 Score=36.26 Aligned_cols=64 Identities=13% Similarity=0.144 Sum_probs=45.0
Q ss_pred HHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEE
Q 025860 77 RRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGI 153 (247)
Q Consensus 77 ~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~ 153 (247)
+|++..+++|+|+|+++.|+ +++++.+++.+++.. ..+.+..+ .|.+++.+.+... .++|.|-+
T Consensus 200 eqa~ea~~agaDiI~LDn~~-~e~l~~av~~~~~~~--~~~~leaS--------GGI~~~ni~~yA~--tGvD~Is~ 263 (284)
T PRK06096 200 KEAIAALRAQPDVLQLDKFS-PQQATEIAQIAPSLA--PHCTLSLA--------GGINLNTLKNYAD--CGIRLFIT 263 (284)
T ss_pred HHHHHHHHcCCCEEEECCCC-HHHHHHHHHHhhccC--CCeEEEEE--------CCCCHHHHHHHHh--cCCCEEEE
Confidence 45556677999999999876 899999998876542 23444443 5788888777554 47887743
No 168
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=86.72 E-value=12 Score=34.55 Aligned_cols=98 Identities=12% Similarity=0.162 Sum_probs=62.2
Q ss_pred HHHHHhcCCCCEEEEecCCC---------------HHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHH
Q 025860 78 RVQVLVESAPDLIAFETIPN---------------KIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIA 142 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~---------------~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~ 142 (247)
-++...++|+|.|-+=.-.| ++.++.+++.+++.+ . .++|++.+..+. +=+-+.+.++.+
T Consensus 77 di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g--~--~v~~~~ed~~r~-~~~~l~~~~~~~ 151 (365)
T TIGR02660 77 DIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRG--L--FVSVGGEDASRA-DPDFLVELAEVA 151 (365)
T ss_pred HHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCC--C--EEEEeecCCCCC-CHHHHHHHHHHH
Confidence 45667789999875554333 334445666666653 3 356777665543 233445555555
Q ss_pred HhCCCCeEEEEcCC----ChhHHHHHHHHHHhhcCCCEEEEeC
Q 025860 143 ESCKRVVSVGINCT----PPRFISGLILIIKKVTAKPILIYPN 181 (247)
Q Consensus 143 ~~~~~~~avG~NC~----~p~~~~~~l~~l~~~~~~pl~vyPN 181 (247)
.+ .+++-|.+-=+ .|+.+..+++.+++..+.||.+...
T Consensus 152 ~~-~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~v~l~~H~H 193 (365)
T TIGR02660 152 AE-AGADRFRFADTVGILDPFSTYELVRALRQAVDLPLEMHAH 193 (365)
T ss_pred HH-cCcCEEEEcccCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 55 47776655333 3999999999998877788877665
No 169
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=86.71 E-value=11 Score=32.13 Aligned_cols=101 Identities=16% Similarity=0.145 Sum_probs=57.8
Q ss_pred HHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCC-----c-------ccCCCcHHHHHHHHHhC
Q 025860 78 RVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGV-----N-------VVSGDSLLECASIAESC 145 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~-----~-------l~~G~~~~~~~~~~~~~ 145 (247)
.++.+.+.|+|.+++=|.. +.....+.++.++++ +..+.+|+.+..+. . ...+.++.+.++.+.+
T Consensus 88 d~~~~~~~G~~~vilg~~~-l~~~~~~~~~~~~~~-~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~- 164 (232)
T TIGR03572 88 DAKKLLSLGADKVSINTAA-LENPDLIEEAARRFG-SQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQ- 164 (232)
T ss_pred HHHHHHHcCCCEEEEChhH-hcCHHHHHHHHHHcC-CceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHH-
Confidence 3344555799988876432 222233333444443 23367888876641 1 1235567778888876
Q ss_pred CCCeEEEEcCCChh-----HHHHHHHHHHhhcCCCEEEEeCCC
Q 025860 146 KRVVSVGINCTPPR-----FISGLILIIKKVTAKPILIYPNSG 183 (247)
Q Consensus 146 ~~~~avG~NC~~p~-----~~~~~l~~l~~~~~~pl~vyPNaG 183 (247)
.+++.|-+.....+ .-.++++.+++..+.|+ +.++|
T Consensus 165 ~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipv--ia~GG 205 (232)
T TIGR03572 165 LGAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPV--IALGG 205 (232)
T ss_pred cCCCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCE--EEECC
Confidence 58888777763221 12567777777777784 44444
No 170
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=86.71 E-value=21 Score=31.23 Aligned_cols=124 Identities=15% Similarity=0.155 Sum_probs=69.3
Q ss_pred HHHHHhcCCCCEEEEecC-C------CHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccC--CCcHHHHHHHHHhCCCC
Q 025860 78 RVQVLVESAPDLIAFETI-P------NKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVS--GDSLLECASIAESCKRV 148 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~-~------~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~--G~~~~~~~~~~~~~~~~ 148 (247)
.++.+++.|+|.+-+.-- . .+.+++.+.+..++. +.|+++-+. .+..++.. -+.+..+++...+ .++
T Consensus 95 ~v~~al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~--g~~liv~~~-~~Gvh~~~~~~~~~~~~~~~a~~-~GA 170 (258)
T TIGR01949 95 TVEDAIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDW--GVPLLAMMY-PRGPHIDDRDPELVAHAARLGAE-LGA 170 (258)
T ss_pred eHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHc--CCCEEEEEe-ccCcccccccHHHHHHHHHHHHH-HCC
Confidence 466677899987766432 1 222444444455544 588887443 22222211 1223333444444 689
Q ss_pred eEEEEcCCChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEEeecCC
Q 025860 149 VSVGINCTPPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCR 224 (247)
Q Consensus 149 ~avG~NC~~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iIGGCCG 224 (247)
|.|++.-.. -...++.+.+..+.|+.+- +|... .+.+++.+.+.+.++.|+. |=+.|
T Consensus 171 Dyikt~~~~---~~~~l~~~~~~~~iPVva~--GGi~~------------~~~~~~~~~i~~~~~aGa~--Gia~g 227 (258)
T TIGR01949 171 DIVKTPYTG---DIDSFRDVVKGCPAPVVVA--GGPKT------------NSDREFLQMIKDAMEAGAA--GVAVG 227 (258)
T ss_pred CEEeccCCC---CHHHHHHHHHhCCCcEEEe--cCCCC------------CCHHHHHHHHHHHHHcCCc--EEehh
Confidence 999987542 1234445544456887442 33210 1357788888899999998 66666
No 171
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=86.60 E-value=17 Score=32.92 Aligned_cols=143 Identities=13% Similarity=0.154 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCEEEEec-CC---CHHHH--------HHHHHHHHhhCCCC-cEEEEEEEcCCCcccCCCcH
Q 025860 69 ETLKDFHRRRVQVLVESAPDLIAFET-IP---NKIEA--------QAYAELLEEENIKI-PAWFSFNSKDGVNVVSGDSL 135 (247)
Q Consensus 69 ~e~~~~~~~q~~~l~~~gvD~i~~ET-~~---~~~E~--------~aa~~~~~~~~~~~-pv~is~~~~~~~~l~~G~~~ 135 (247)
+.+.++..+.++.++++|+|+|.+-. .. +.+.. +.+++.+++.+ . ++++-. | |..
T Consensus 178 ~~~~~~~~~~~~~~~~~G~d~i~~~d~~~~~isp~~f~e~~~P~~k~i~~~i~~~g--~~~~~lH~-c--------G~~- 245 (343)
T PF01208_consen 178 DKITDFIIEYAKAQIEAGADGIFIFDSSGSLISPEMFEEFILPYLKKIIDAIKEAG--KDPVILHI-C--------GNT- 245 (343)
T ss_dssp HHHHHHHHHHHHHHHHTT-SEEEEEETTGGGS-HHHHHHHTHHHHHHHHHHHHHHE--TE-EEEEE-T--------THG-
T ss_pred HHHHHHHHHHHHHHHHhCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHhC--CCceEEEE-C--------Cch-
Confidence 33555666777788889999885443 22 22322 23445555553 3 555433 2 321
Q ss_pred HHHHHHHHhCCCCeEEEEcCCChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcC
Q 025860 136 LECASIAESCKRVVSVGINCTPPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVG 215 (247)
Q Consensus 136 ~~~~~~~~~~~~~~avG~NC~~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G 215 (247)
...+..+.+ .+++++.+.= ...+.++.+.+. .+ +.+.-|--. ...+. -++++..+.+++.++.+
T Consensus 246 ~~~~~~l~~-~g~d~~~~~~--~~~~~~~~~~~~--~~--~~l~Gni~~------~~~l~---gt~eei~~~v~~~i~~~ 309 (343)
T PF01208_consen 246 TPILDDLAD-LGADVLSVDE--KVDLAEAKRKLG--DK--IVLMGNIDP------VSLLF---GTPEEIEEEVKRLIEEG 309 (343)
T ss_dssp -GGHHHHHT-SS-SEEEE-T--TS-HHHHHHHHT--TS--SEEEEEB-G-------GGGG---S-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHh-cCCCEEEEcC--CCCHHHHHHHhC--CC--eEEECCCCc------ccccc---CCHHHHHHHHHHHHHHh
Confidence 225555665 5788766532 223334444332 12 333433311 01122 25889999999998843
Q ss_pred C-----eEEeecCC----CChHHHHHHHHHhhC
Q 025860 216 A-----SLVGGCCR----TTPNTIKGIYRTLSN 239 (247)
Q Consensus 216 ~-----~iIGGCCG----t~P~hI~al~~~l~~ 239 (247)
. -|+|--|+ |.|+.|+++.+++++
T Consensus 310 ~~~~~gfIl~~gc~ip~~~p~eni~a~~~a~~e 342 (343)
T PF01208_consen 310 LAGGGGFILSPGCGIPPDTPPENIKAMVEAVKE 342 (343)
T ss_dssp HCTSSSEEBEBSS---TTS-HHHHHHHHHHHHH
T ss_pred cCCCCCEEEeCCCcCCCCcCHHHHHHHHHHHHh
Confidence 3 37887785 789999999888753
No 172
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=86.56 E-value=19 Score=32.41 Aligned_cols=145 Identities=17% Similarity=0.121 Sum_probs=82.5
Q ss_pred CCHH---HHHHHHHHHHHHHhcCCCCEEEEecCC--------C-----------------HHHHHHHHHHHHhh-CCCCc
Q 025860 66 ITVE---TLKDFHRRRVQVLVESAPDLIAFETIP--------N-----------------KIEAQAYAELLEEE-NIKIP 116 (247)
Q Consensus 66 ~s~~---e~~~~~~~q~~~l~~~gvD~i~~ET~~--------~-----------------~~E~~aa~~~~~~~-~~~~p 116 (247)
.|.+ ++.+.|.+-++.+.++|.|.|=+-.-. + ...+..+++.+++. +.+.|
T Consensus 131 mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~ 210 (327)
T cd02803 131 MTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFP 210 (327)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCce
Confidence 5554 456678888888888999998554320 1 12234555666653 34567
Q ss_pred EEEEEEEcCCCcccCCCcHHHHH---HHHHhCCCCeEEEEcCCC---h-----------hHHHHHHHHHHhhcCCCEEEE
Q 025860 117 AWFSFNSKDGVNVVSGDSLLECA---SIAESCKRVVSVGINCTP---P-----------RFISGLILIIKKVTAKPILIY 179 (247)
Q Consensus 117 v~is~~~~~~~~l~~G~~~~~~~---~~~~~~~~~~avG~NC~~---p-----------~~~~~~l~~l~~~~~~pl~vy 179 (247)
+.+-++..+ ....|.++++++ +.+.+ .+++.|-+.... + ......++.+++..+.||++
T Consensus 211 i~vris~~~--~~~~g~~~~e~~~la~~l~~-~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~- 286 (327)
T cd02803 211 VGVRLSADD--FVPGGLTLEEAIEIAKALEE-AGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIA- 286 (327)
T ss_pred EEEEechhc--cCCCCCCHHHHHHHHHHHHH-cCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEE-
Confidence 777766432 223566666654 44444 578888765531 1 22346677777777888654
Q ss_pred eCCCCcccccccccccCCCCChHHHHHHHHHHHHc-CCeEEeecCC--CChHHHHHH
Q 025860 180 PNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEV-GASLVGGCCR--TTPNTIKGI 233 (247)
Q Consensus 180 PNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~iIGGCCG--t~P~hI~al 233 (247)
|.|. .+++.+ .+.++. |+.+|+=+-+ ..|+..+.+
T Consensus 287 -~Ggi--------------~t~~~a----~~~l~~g~aD~V~igR~~ladP~l~~k~ 324 (327)
T cd02803 287 -VGGI--------------RDPEVA----EEILAEGKADLVALGRALLADPDLPNKA 324 (327)
T ss_pred -eCCC--------------CCHHHH----HHHHHCCCCCeeeecHHHHhCccHHHHH
Confidence 3332 124333 335555 6888875433 355554443
No 173
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=86.47 E-value=4.6 Score=39.66 Aligned_cols=48 Identities=25% Similarity=0.237 Sum_probs=37.9
Q ss_pred HHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHH---HhhCCCCcEEEEEEEc
Q 025860 76 RRRVQVLVESAPDLIAFETIPNKIEAQAYAELL---EEENIKIPAWFSFNSK 124 (247)
Q Consensus 76 ~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~---~~~~~~~pv~is~~~~ 124 (247)
-+|+..|.++|+|++= =|+|+.++++++-+.. ++.+.+.|++.-+.|+
T Consensus 48 v~Qi~~L~~aGceiVR-vtvp~~~~A~al~~I~~~L~~~g~~iPLVADIHF~ 98 (606)
T PRK00694 48 VRQICALQEWGCDIVR-VTVQGLKEAQACEHIKERLIQQGISIPLVADIHFF 98 (606)
T ss_pred HHHHHHHHHcCCCEEE-EcCCCHHHHHhHHHHHHHHhccCCCCCEEeecCCC
Confidence 4489999999999987 4889999988765543 3345679999999885
No 174
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=86.45 E-value=4.5 Score=36.44 Aligned_cols=66 Identities=21% Similarity=0.250 Sum_probs=46.1
Q ss_pred HHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcC
Q 025860 77 RRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINC 155 (247)
Q Consensus 77 ~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC 155 (247)
+|+...+++|+|+|.+..++ +++++.+++.+++...+.|+.+| .|-+++.+.+... .|+|.|-+-.
T Consensus 207 eea~eA~~~GaD~I~LDn~~-~e~l~~av~~~~~~~~~i~leAs----------GGIt~~ni~~ya~--tGvD~Isvgs 272 (288)
T PRK07428 207 EQVQEALEYGADIIMLDNMP-VDLMQQAVQLIRQQNPRVKIEAS----------GNITLETIRAVAE--TGVDYISSSA 272 (288)
T ss_pred HHHHHHHHcCCCEEEECCCC-HHHHHHHHHHHHhcCCCeEEEEE----------CCCCHHHHHHHHH--cCCCEEEEch
Confidence 34545567999999999876 79999999988764334443332 4777777777553 5788877655
No 175
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=86.40 E-value=13 Score=33.26 Aligned_cols=102 Identities=9% Similarity=0.062 Sum_probs=63.0
Q ss_pred HHHHHhcCCCCEEEEecCCC---------------HHHHHHHHHHHHhhCCCCcEEEEEEE--cCCCcccCCCcHHHHHH
Q 025860 78 RVQVLVESAPDLIAFETIPN---------------KIEAQAYAELLEEENIKIPAWFSFNS--KDGVNVVSGDSLLECAS 140 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~---------------~~E~~aa~~~~~~~~~~~pv~is~~~--~~~~~l~~G~~~~~~~~ 140 (247)
-++...+.|+|.+-+-.-.+ +++++.+++.+++.+...-+.+++++ ..+++. +=+-+.+.++
T Consensus 84 ~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~-~~~~~~~~~~ 162 (287)
T PRK05692 84 GLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEV-PPEAVADVAE 162 (287)
T ss_pred HHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCC-CHHHHHHHHH
Confidence 34556678999875553222 33566778888877532333344443 344432 2234555666
Q ss_pred HHHhCCCCeEEEEcCC----ChhHHHHHHHHHHhhcC-CCEEEEeC
Q 025860 141 IAESCKRVVSVGINCT----PPRFISGLILIIKKVTA-KPILIYPN 181 (247)
Q Consensus 141 ~~~~~~~~~avG~NC~----~p~~~~~~l~~l~~~~~-~pl~vyPN 181 (247)
.+.+ .|++.|.+-=+ .|..+..+++.+++..+ .||.+.-.
T Consensus 163 ~~~~-~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~H 207 (287)
T PRK05692 163 RLFA-LGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGHFH 207 (287)
T ss_pred HHHH-cCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 6666 58887777543 49999999999987754 67766554
No 176
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=86.36 E-value=18 Score=30.00 Aligned_cols=111 Identities=9% Similarity=0.025 Sum_probs=65.9
Q ss_pred HHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEE-EEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCC
Q 025860 78 RVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFS-FNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT 156 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is-~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~ 156 (247)
+++.+.++|+|++.+=..+...++..+++.+++. ++++.+. ++. . +..+..+ +.. .+++.++++=.
T Consensus 69 ~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~--g~~~~v~~~~~--------~-t~~e~~~-~~~-~~~d~v~~~~~ 135 (202)
T cd04726 69 EAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKY--GKEVQVDLIGV--------E-DPEKRAK-LLK-LGVDIVILHRG 135 (202)
T ss_pred HHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHc--CCeEEEEEeCC--------C-CHHHHHH-HHH-CCCCEEEEcCc
Confidence 4566778999999987666666677888888876 4676665 322 2 3455555 333 36788887521
Q ss_pred ------ChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEEeec
Q 025860 157 ------PPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGC 222 (247)
Q Consensus 157 ------~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iIGGC 222 (247)
+.....+.++.+++..+.|+.+-+ | .++ +.+.++++.|+..++..
T Consensus 136 ~~~~~~~~~~~~~~i~~~~~~~~~~i~~~G--G---------------I~~----~~i~~~~~~Gad~vvvG 186 (202)
T cd04726 136 IDAQAAGGWWPEDDLKKVKKLLGVKVAVAG--G---------------ITP----DTLPEFKKAGADIVIVG 186 (202)
T ss_pred ccccccCCCCCHHHHHHHHhhcCCCEEEEC--C---------------cCH----HHHHHHHhcCCCEEEEe
Confidence 112334555555543345543222 2 334 34667888898876543
No 177
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=86.16 E-value=24 Score=31.33 Aligned_cols=100 Identities=15% Similarity=0.166 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEE-----e-cCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHH
Q 025860 66 ITVETLKDFHRRRVQVLVESAPDLIAF-----E-TIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECA 139 (247)
Q Consensus 66 ~s~~e~~~~~~~q~~~l~~~gvD~i~~-----E-T~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~ 139 (247)
++.+.+.+ +++.+++.|||.|++ | ..-+.+|-+.+++.+.+.. + ++++.+ ...+..+++
T Consensus 17 iD~~~~~~----li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~-~-~vi~gv---------g~~~~~~ai 81 (279)
T cd00953 17 IDKEKFKK----HCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDIT-D-KVIFQV---------GSLNLEESI 81 (279)
T ss_pred cCHHHHHH----HHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHc-C-CEEEEe---------CcCCHHHHH
Confidence 66665555 788888899999876 3 2335677788888766653 2 455443 234556666
Q ss_pred HHHHh--CCCCeEEEEcC------CChhHHHHHHHHHHhhcCCCEEEEeCC
Q 025860 140 SIAES--CKRVVSVGINC------TPPRFISGLILIIKKVTAKPILIYPNS 182 (247)
Q Consensus 140 ~~~~~--~~~~~avG~NC------~~p~~~~~~l~~l~~~~~~pl~vyPNa 182 (247)
+..+. ..|++++.+=- .+++.+....+.+.+ +.|+++|=|-
T Consensus 82 ~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~--~lpv~iYn~P 130 (279)
T cd00953 82 ELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS--PYPTFIYNYP 130 (279)
T ss_pred HHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh--cCCEEEEeCc
Confidence 65432 35888877622 124556666677766 7999999543
No 178
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=85.66 E-value=11 Score=33.05 Aligned_cols=101 Identities=13% Similarity=0.111 Sum_probs=59.4
Q ss_pred HHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCC----c--c-----cCCCcHHHHHHHHHhCC
Q 025860 78 RVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGV----N--V-----VSGDSLLECASIAESCK 146 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~----~--l-----~~G~~~~~~~~~~~~~~ 146 (247)
.++.+.+.|+|.+.+-|.. +.....+.+++++++ +-.+.+|+.++.+. . + ....++.+.++.+.+ .
T Consensus 88 d~~~l~~~G~~~vvigs~~-~~~~~~~~~~~~~~~-~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~-~ 164 (258)
T PRK01033 88 QAKKIFSLGVEKVSINTAA-LEDPDLITEAAERFG-SQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEA-L 164 (258)
T ss_pred HHHHHHHCCCCEEEEChHH-hcCHHHHHHHHHHhC-CCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHH-c
Confidence 3444556799998876531 222233344444443 23478899886541 1 1 235567788888876 5
Q ss_pred CCeEEEEcCCChh-----HHHHHHHHHHhhcCCCEEEEeCCC
Q 025860 147 RVVSVGINCTPPR-----FISGLILIIKKVTAKPILIYPNSG 183 (247)
Q Consensus 147 ~~~avG~NC~~p~-----~~~~~l~~l~~~~~~pl~vyPNaG 183 (247)
++..|-++...-+ .-.++++.+.+..+.|+ ..++|
T Consensus 165 g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~ipv--IasGG 204 (258)
T PRK01033 165 GAGEILLNSIDRDGTMKGYDLELLKSFRNALKIPL--IALGG 204 (258)
T ss_pred CCCEEEEEccCCCCCcCCCCHHHHHHHHhhCCCCE--EEeCC
Confidence 7887777753211 12566777777778885 44554
No 179
>PLN02433 uroporphyrinogen decarboxylase
Probab=85.29 E-value=30 Score=31.66 Aligned_cols=137 Identities=9% Similarity=0.104 Sum_probs=77.6
Q ss_pred HHHHHHHHhcCCCCEE-EEec---CCCHHHHHH--------HHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHH
Q 025860 75 HRRRVQVLVESAPDLI-AFET---IPNKIEAQA--------YAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIA 142 (247)
Q Consensus 75 ~~~q~~~l~~~gvD~i-~~ET---~~~~~E~~a--------a~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~ 142 (247)
-.+.++.++++|+|++ +++. +-+.++.+. +++.+++...+.|++. +.| |.+ .....+
T Consensus 181 ~~~~~~~~ieaGa~~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~il-h~c--------G~~--~~~~~~ 249 (345)
T PLN02433 181 VIEYVDYQIDAGAQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEVKARHPDVPLIL-YAN--------GSG--GLLERL 249 (345)
T ss_pred HHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEE-EeC--------CCH--HHHHHH
Confidence 3455556677999987 5543 333444442 3334443321244443 433 322 345566
Q ss_pred HhCCCCeEEEEcCC-ChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCe---E
Q 025860 143 ESCKRVVSVGINCT-PPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGAS---L 218 (247)
Q Consensus 143 ~~~~~~~avG~NC~-~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~---i 218 (247)
.+ .+++++++--. +... +.+ .....+.++-|--. .-. . -++++..+.+++.++.+.. |
T Consensus 250 ~~-~~~~~i~~d~~~dl~e---~~~----~~g~~~~l~GNi~p-------~ll-~--gt~e~i~~~v~~~i~~~~~~g~I 311 (345)
T PLN02433 250 AG-TGVDVIGLDWTVDMAD---ARR----RLGSDVAVQGNVDP-------AVL-F--GSKEAIEKEVRDVVKKAGPQGHI 311 (345)
T ss_pred Hh-cCCCEEEcCCCCCHHH---HHH----HhCCCeEEEeCCCc-------hhh-C--CCHHHHHHHHHHHHHHcCCCCeE
Confidence 66 47887776554 4332 222 22333556666532 011 1 2588899999999886444 7
Q ss_pred EeecCC----CChHHHHHHHHHhhCC
Q 025860 219 VGGCCR----TTPNTIKGIYRTLSNR 240 (247)
Q Consensus 219 IGGCCG----t~P~hI~al~~~l~~~ 240 (247)
+.--|| |-|++|+++.++++..
T Consensus 312 l~~Gc~i~~~tp~eNi~a~v~av~~~ 337 (345)
T PLN02433 312 LNLGHGVLVGTPEENVAHFFDVAREL 337 (345)
T ss_pred EecCCCCCCCCCHHHHHHHHHHHHHh
Confidence 776666 6789999999888753
No 180
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=85.20 E-value=22 Score=33.88 Aligned_cols=67 Identities=9% Similarity=0.135 Sum_probs=44.6
Q ss_pred HHHHHHHHhcCCCCEEEEecC-CCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEE
Q 025860 75 HRRRVQVLVESAPDLIAFETI-PNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGI 153 (247)
Q Consensus 75 ~~~q~~~l~~~gvD~i~~ET~-~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~ 153 (247)
..++++.|+++|+|+|.+-+- .+-.-+...++.+++..+++|+++. +..+.+++...+ + .|+++|.+
T Consensus 225 ~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G----------~v~t~~~a~~l~-~-aGad~i~v 292 (450)
T TIGR01302 225 DKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAG----------NVATAEQAKALI-D-AGADGLRV 292 (450)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEE----------eCCCHHHHHHHH-H-hCCCEEEE
Confidence 345888999999999998762 3334455566667765447898873 244556666544 3 47888755
No 181
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=85.08 E-value=1.8 Score=37.98 Aligned_cols=77 Identities=21% Similarity=0.208 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEecCCCH-------HHHHHH-----HHHHHhhCCCCcEEEEEEEcCCCcccCCCc
Q 025860 67 TVETLKDFHRRRVQVLVESAPDLIAFETIPNK-------IEAQAY-----AELLEEENIKIPAWFSFNSKDGVNVVSGDS 134 (247)
Q Consensus 67 s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~-------~E~~aa-----~~~~~~~~~~~pv~is~~~~~~~~l~~G~~ 134 (247)
+.+++.+.-..-++.|.++|+|.+++|.+.+. .|-.++ -+..++. .+|+=+.+--+ + +
T Consensus 28 ~~~~vid~A~~dA~~leegG~DavivEN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v--~iPvGvNVLrN------d--~ 97 (263)
T COG0434 28 SLEAVIDRAVRDAAALEEGGVDAVIVENYGDAPFLKDVGPETVAAMAVIVREVVREV--SIPVGVNVLRN------D--A 97 (263)
T ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCChHHHHHHHHHHHHHHHhc--cccceeeeecc------c--c
Confidence 78899998888899999999999999988764 122222 2333443 57887766321 2 2
Q ss_pred HHHHHHHHHhCCCCeEEEEcC
Q 025860 135 LLECASIAESCKRVVSVGINC 155 (247)
Q Consensus 135 ~~~~~~~~~~~~~~~avG~NC 155 (247)
+. ++.... +.+++.|=+|-
T Consensus 98 va-A~~IA~-a~gA~FIRVN~ 116 (263)
T COG0434 98 VA-ALAIAY-AVGADFIRVNV 116 (263)
T ss_pred HH-HHHHHH-hcCCCEEEEEe
Confidence 22 222222 24677777776
No 182
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=85.02 E-value=24 Score=30.39 Aligned_cols=101 Identities=15% Similarity=0.163 Sum_probs=64.5
Q ss_pred HHHHHHHhcCCCCEEEEecCCC---------------HHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHH
Q 025860 76 RRRVQVLVESAPDLIAFETIPN---------------KIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECAS 140 (247)
Q Consensus 76 ~~q~~~l~~~gvD~i~~ET~~~---------------~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~ 140 (247)
.+.++.+.+.|+|.+.+=.-.+ ++++..+++.+++. ++++.+++...... ..+=+.+.+.++
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~--G~~v~~~~~~~~~~-~~~~~~l~~~~~ 153 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEA--GLEVEGSLEDAFGC-KTDPEYVLEVAK 153 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEEeecCC-CCCHHHHHHHHH
Confidence 4456677778998886554443 67777788888876 46777777321110 012223445566
Q ss_pred HHHhCCCCeEEEEcCC----ChhHHHHHHHHHHhhcC-CCEEEEe
Q 025860 141 IAESCKRVVSVGINCT----PPRFISGLILIIKKVTA-KPILIYP 180 (247)
Q Consensus 141 ~~~~~~~~~avG~NC~----~p~~~~~~l~~l~~~~~-~pl~vyP 180 (247)
.+.+ .+++.|.+.=+ .|+.+..+++.+++..+ .|+.+..
T Consensus 154 ~~~~-~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~ 197 (265)
T cd03174 154 ALEE-AGADEISLKDTVGLATPEEVAELVKALREALPDVPLGLHT 197 (265)
T ss_pred HHHH-cCCCEEEechhcCCcCHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 5555 47777665432 49999999999988765 7776655
No 183
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=84.97 E-value=30 Score=31.49 Aligned_cols=133 Identities=16% Similarity=0.154 Sum_probs=72.4
Q ss_pred HHHHHHHhcCCCCEEEEecC-----C-----CH-HHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHh
Q 025860 76 RRRVQVLVESAPDLIAFETI-----P-----NK-IEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAES 144 (247)
Q Consensus 76 ~~q~~~l~~~gvD~i~~ET~-----~-----~~-~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~ 144 (247)
.+.++.+.++|+|.|-+-.. . +. +....+++.+++.. ++|+++-++- .-+.+.+.++.+.+
T Consensus 117 ~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~-~iPV~vKl~p-------~~~~~~~~a~~l~~ 188 (334)
T PRK07565 117 VDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV-SIPVAVKLSP-------YFSNLANMAKRLDA 188 (334)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc-CCcEEEEeCC-------CchhHHHHHHHHHH
Confidence 34566666789999976321 1 11 12445666666653 6899988752 11246777777776
Q ss_pred CCCCeEE-EEcCC-Ch----h-----------------HHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCCh
Q 025860 145 CKRVVSV-GINCT-PP----R-----------------FISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSD 201 (247)
Q Consensus 145 ~~~~~av-G~NC~-~p----~-----------------~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~ 201 (247)
.++++| -+|-. .. + .....+..+++..+.||+. |+|. .++
T Consensus 189 -~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig--~GGI--------------~s~ 251 (334)
T PRK07565 189 -AGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAA--TTGV--------------HDA 251 (334)
T ss_pred -cCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEE--ECCC--------------CCH
Confidence 577765 33553 11 0 1123444555555677553 4443 123
Q ss_pred HHHHHHHHHHHHcCCeEEeecCCC---ChHHHHHHHHHh
Q 025860 202 EDFVSYVSKWCEVGASLVGGCCRT---TPNTIKGIYRTL 237 (247)
Q Consensus 202 ~~~~~~~~~~~~~G~~iIGGCCGt---~P~hI~al~~~l 237 (247)
++..+ ++..||+.|+-|-+. +|+.++.|.+.|
T Consensus 252 ~Da~e----~l~aGA~~V~v~t~~~~~g~~~~~~i~~~L 286 (334)
T PRK07565 252 EDVIK----MLLAGADVVMIASALLRHGPDYIGTILRGL 286 (334)
T ss_pred HHHHH----HHHcCCCceeeehHHhhhCcHHHHHHHHHH
Confidence 33333 344677777766552 466666555444
No 184
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=84.94 E-value=9.9 Score=33.23 Aligned_cols=95 Identities=7% Similarity=-0.078 Sum_probs=61.1
Q ss_pred HHHHHHhcCCCCEEEEecC--CCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCc------ccCCCcHHHHHHHHHhCCCC
Q 025860 77 RRVQVLVESAPDLIAFETI--PNKIEAQAYAELLEEENIKIPAWFSFNSKDGVN------VVSGDSLLECASIAESCKRV 148 (247)
Q Consensus 77 ~q~~~l~~~gvD~i~~ET~--~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~------l~~G~~~~~~~~~~~~~~~~ 148 (247)
++++.+++.|+|-+++-|. .+++-++.+ .+++ + .+++|+.++++.. ..++.++.+.++.+.+ .++
T Consensus 86 e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~----~~~~-~-~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~-~g~ 158 (241)
T PRK14114 86 DYAEKLRKLGYRRQIVSSKVLEDPSFLKFL----KEID-V-EPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKE-YGL 158 (241)
T ss_pred HHHHHHHHCCCCEEEECchhhCCHHHHHHH----HHhC-C-CEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHh-cCC
Confidence 4666677799999888764 454444443 2344 3 3799999876422 2356678888888876 577
Q ss_pred eEEEEcCCChhHH-----HHHHHHHHhhcCCCEEE
Q 025860 149 VSVGINCTPPRFI-----SGLILIIKKVTAKPILI 178 (247)
Q Consensus 149 ~avG~NC~~p~~~-----~~~l~~l~~~~~~pl~v 178 (247)
..|-++-.+-+.+ .++++.+.+..+.|+++
T Consensus 159 ~~ii~tdI~rdGt~~G~d~el~~~l~~~~~~pvia 193 (241)
T PRK14114 159 EEIVHTEIEKDGTLQEHDFSLTRKIAIEAEVKVFA 193 (241)
T ss_pred CEEEEEeechhhcCCCcCHHHHHHHHHHCCCCEEE
Confidence 7777775322111 45677777777788644
No 185
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=84.93 E-value=23 Score=30.17 Aligned_cols=147 Identities=13% Similarity=0.149 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEe-cCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHh
Q 025860 66 ITVETLKDFHRRRVQVLVESAPDLIAFE-TIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAES 144 (247)
Q Consensus 66 ~s~~e~~~~~~~q~~~l~~~gvD~i~~E-T~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~ 144 (247)
.+.++..+ .++.|.+.|+|.|=+- -..+..+.+.+.+..+... + .-+.++.- ..-..+..+++.+..
T Consensus 11 ~~~~~k~~----i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~-~-~~~~~~~~------~~~~~i~~~~~~~~~ 78 (237)
T PF00682_consen 11 FSTEEKLE----IAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALP-N-ARLQALCR------ANEEDIERAVEAAKE 78 (237)
T ss_dssp --HHHHHH----HHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHH-S-SEEEEEEE------SCHHHHHHHHHHHHH
T ss_pred cCHHHHHH----HHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhc-c-cccceeee------ehHHHHHHHHHhhHh
Confidence 46677666 4445677899997444 2344556555555444432 2 22223321 122345666666665
Q ss_pred CCCCeEEEEcCC-Ch---------------hHHHHHHHHHHhhcCCCEEEEe-CCCCcccccccccccCCCCChHHHHHH
Q 025860 145 CKRVVSVGINCT-PP---------------RFISGLILIIKKVTAKPILIYP-NSGEFYDADRKEWVQNTGVSDEDFVSY 207 (247)
Q Consensus 145 ~~~~~avG~NC~-~p---------------~~~~~~l~~l~~~~~~pl~vyP-NaG~~~d~~~~~~~~~~~~~~~~~~~~ 207 (247)
.+++.|.+-+. ++ +.+.++++..++. ...+.+.+ +++ ..+++++.+.
T Consensus 79 -~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~-g~~v~~~~~~~~--------------~~~~~~~~~~ 142 (237)
T PF00682_consen 79 -AGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKEL-GYEVAFGCEDAS--------------RTDPEELLEL 142 (237)
T ss_dssp -TTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHT-TSEEEEEETTTG--------------GSSHHHHHHH
T ss_pred -ccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhc-CCceEeCccccc--------------cccHHHHHHH
Confidence 57887777774 43 2233333333322 22221111 110 1358899999
Q ss_pred HHHHHHcCCeEEeecC---CCChHHHHHHHHHhhCC
Q 025860 208 VSKWCEVGASLVGGCC---RTTPNTIKGIYRTLSNR 240 (247)
Q Consensus 208 ~~~~~~~G~~iIGGCC---Gt~P~hI~al~~~l~~~ 240 (247)
++...+.|+..|.=|= ..+|..+..+-+.++..
T Consensus 143 ~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~ 178 (237)
T PF00682_consen 143 AEALAEAGADIIYLADTVGIMTPEDVAELVRALREA 178 (237)
T ss_dssp HHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHh
Confidence 9999999999987552 24899998887777654
No 186
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=84.87 E-value=31 Score=31.50 Aligned_cols=140 Identities=16% Similarity=0.209 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHhcCCCCEEE-Eec---CCCHHHHHH--------HHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHH
Q 025860 71 LKDFHRRRVQVLVESAPDLIA-FET---IPNKIEAQA--------YAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLEC 138 (247)
Q Consensus 71 ~~~~~~~q~~~l~~~gvD~i~-~ET---~~~~~E~~a--------a~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~ 138 (247)
+.+.-.+.++.++++|+|+|. ++. +-+.++.+. +++.+++.+++.|++ -++ . |+ ...
T Consensus 184 ~t~~~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~il-h~c-g-------~~--~~~ 252 (346)
T PRK00115 184 LADATIAYLNAQIEAGAQAVQIFDSWAGALSPADYREFVLPYMKRIVAELKREHPDVPVI-LFG-K-------GA--GEL 252 (346)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEE-EEc-C-------Cc--HHH
Confidence 344455667777789999885 664 444444442 233344332123333 332 1 22 123
Q ss_pred HHHHHhCCCCeEEEEcCC-ChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCe
Q 025860 139 ASIAESCKRVVSVGINCT-PPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGAS 217 (247)
Q Consensus 139 ~~~~~~~~~~~avG~NC~-~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 217 (247)
+..+.+ .++++++++-. +.. ..++..+..+.++-|--. .-.. .++++..+.+++.++.+..
T Consensus 253 ~~~~~~-~~~~~is~d~~~dl~-------~~k~~~g~~~~i~Gni~p-------~ll~---gt~e~i~~~~~~~i~~~~~ 314 (346)
T PRK00115 253 LEAMAE-TGADVVGLDWTVDLA-------EARRRVGDKKALQGNLDP-------AVLL---APPEAIEEEVRAILDGGGG 314 (346)
T ss_pred HHHHHh-cCCCEEeeCCCCCHH-------HHHHHcCCCeEEEeCCCh-------hHhc---CCHHHHHHHHHHHHHHhCC
Confidence 455665 58899999875 332 222223333666666521 0111 2588899999999885433
Q ss_pred ---EEe-ecC---CCChHHHHHHHHHhhC
Q 025860 218 ---LVG-GCC---RTTPNTIKGIYRTLSN 239 (247)
Q Consensus 218 ---iIG-GCC---Gt~P~hI~al~~~l~~ 239 (247)
|+. ||. +|-++.|+++-++++.
T Consensus 315 ~gfIl~~Gc~i~~~tp~eNi~a~v~a~~~ 343 (346)
T PRK00115 315 PGHIFNLGHGILPETPPENVKALVEAVHE 343 (346)
T ss_pred CCeeeecCCcCCCCcCHHHHHHHHHHHHH
Confidence 554 443 5789999999988764
No 187
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=84.77 E-value=13 Score=35.08 Aligned_cols=62 Identities=13% Similarity=0.145 Sum_probs=42.7
Q ss_pred CCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCCChh----------------HHHHHHHHHHhhcCCCEE
Q 025860 114 KIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTPPR----------------FISGLILIIKKVTAKPIL 177 (247)
Q Consensus 114 ~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~~p~----------------~~~~~l~~l~~~~~~pl~ 177 (247)
+.|+++|+.... +-+.+.++++.+.+ .++++|=+|++.|. .+.++++.+++..++||+
T Consensus 99 ~~p~i~si~g~~-----~~~~~~~~a~~~~~-~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~ 172 (420)
T PRK08318 99 DRALIASIMVEC-----NEEEWKEIAPLVEE-TGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVI 172 (420)
T ss_pred CceEEEEeccCC-----CHHHHHHHHHHHHh-cCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEE
Confidence 578888884210 12345666776666 57999999987543 566777777777789998
Q ss_pred EEeC
Q 025860 178 IYPN 181 (247)
Q Consensus 178 vyPN 181 (247)
|.-.
T Consensus 173 vKl~ 176 (420)
T PRK08318 173 VKLT 176 (420)
T ss_pred EEcC
Confidence 8763
No 188
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=84.52 E-value=27 Score=30.48 Aligned_cols=143 Identities=10% Similarity=0.069 Sum_probs=85.7
Q ss_pred HHHHhcCCCCEEEEe-------------cCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCC--cHHHHHHHHH
Q 025860 79 VQVLVESAPDLIAFE-------------TIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGD--SLLECASIAE 143 (247)
Q Consensus 79 ~~~l~~~gvD~i~~E-------------T~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~--~~~~~~~~~~ 143 (247)
++.+.++|.|.+++= ..-++.|+...++.+.... ++|+.+-+.+ + .|. .+.+.++.+.
T Consensus 22 A~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~-~~Pv~~D~~~---G---~g~~~~~~~~v~~~~ 94 (243)
T cd00377 22 ARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAV-DLPVIADADT---G---YGNALNVARTVRELE 94 (243)
T ss_pred HHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhc-cCCEEEEcCC---C---CCCHHHHHHHHHHHH
Confidence 334445677777531 1234577777777666543 6786655532 2 232 3444566665
Q ss_pred hCCCCeEEEE--------cCC-------ChhHHHHHHHHHHhhcCC--CEEEEeCCCCcccccccccccCCCCChHHHHH
Q 025860 144 SCKRVVSVGI--------NCT-------PPRFISGLILIIKKVTAK--PILIYPNSGEFYDADRKEWVQNTGVSDEDFVS 206 (247)
Q Consensus 144 ~~~~~~avG~--------NC~-------~p~~~~~~l~~l~~~~~~--pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~ 206 (247)
+ .|+.+|-+ ||. +++.+...|+..++..+. ++.+...... .+... .+-++-.+
T Consensus 95 ~-~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa-------~~~~~--~~~~eai~ 164 (243)
T cd00377 95 E-AGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDA-------LLAGE--EGLDEAIE 164 (243)
T ss_pred H-cCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCc-------hhccC--CCHHHHHH
Confidence 5 68999999 553 355666666665555333 4444433211 01110 12456677
Q ss_pred HHHHHHHcCCeEEeecCCCChHHHHHHHHHhh
Q 025860 207 YVSKWCEVGASLVGGCCRTTPNTIKGIYRTLS 238 (247)
Q Consensus 207 ~~~~~~~~G~~iIGGCCGt~P~hI~al~~~l~ 238 (247)
.++.+.++|+..|==-+-.+++||+.+++.++
T Consensus 165 Ra~ay~~AGAD~v~v~~~~~~~~~~~~~~~~~ 196 (243)
T cd00377 165 RAKAYAEAGADGIFVEGLKDPEEIRAFAEAPD 196 (243)
T ss_pred HHHHHHHcCCCEEEeCCCCCHHHHHHHHhcCC
Confidence 78889999999887777779999999988754
No 189
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=84.45 E-value=30 Score=31.06 Aligned_cols=99 Identities=13% Similarity=0.094 Sum_probs=64.5
Q ss_pred HHHHHhcCCCCEEEEecC-----------------CCHHHHHHHHHHHHhh--CCCCcEEEEEEEcCCCcccCCCcHHHH
Q 025860 78 RVQVLVESAPDLIAFETI-----------------PNKIEAQAYAELLEEE--NIKIPAWFSFNSKDGVNVVSGDSLLEC 138 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~-----------------~~~~E~~aa~~~~~~~--~~~~pv~is~~~~~~~~l~~G~~~~~~ 138 (247)
.++.+.++||..|.+|-. -+.+|...-++++++. +.+.+++.-.. ..+ .+..++++
T Consensus 97 ~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTD----a~~-~~~~~~eA 171 (285)
T TIGR02320 97 LVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVE----SLI-LGKGMEDA 171 (285)
T ss_pred HHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecc----ccc-ccCCHHHH
Confidence 567778899999999763 3577888888877764 22334443321 111 23458888
Q ss_pred HHHHHh--CCCCeEEEEcC--CChhHHHHHHHHHHhh-cCCCEEEEeC
Q 025860 139 ASIAES--CKRVVSVGINC--TPPRFISGLILIIKKV-TAKPILIYPN 181 (247)
Q Consensus 139 ~~~~~~--~~~~~avG~NC--~~p~~~~~~l~~l~~~-~~~pl~vyPN 181 (247)
++..+. ..|+|+|=+-+ .+++.+..+.+.+... .+.|+++.|.
T Consensus 172 i~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~~~~~ 219 (285)
T TIGR02320 172 LKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLVIVPT 219 (285)
T ss_pred HHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEEEecC
Confidence 887753 25899888876 3577888888876532 2568876663
No 190
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=84.38 E-value=16 Score=32.73 Aligned_cols=159 Identities=13% Similarity=0.099 Sum_probs=92.0
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCEE-----EEecCCC--HHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHH
Q 025860 67 TVETLKDFHRRRVQVLVESAPDLI-----AFETIPN--KIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECA 139 (247)
Q Consensus 67 s~~e~~~~~~~q~~~l~~~gvD~i-----~~ET~~~--~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~ 139 (247)
+.+.+.+|-+..++.+.+ -|.++ +||.... +.-++.+++.+++. ++||++-+-+.|- |.+....+
T Consensus 35 ~~~~~~~f~~~ivd~~~~-~v~~vK~gla~f~~~G~~G~~~l~~~i~~l~~~--g~~VilD~K~~DI-----~nTv~~ya 106 (278)
T PRK00125 35 DADGLFEFCRIIVDATAD-LVAAFKPQIAYFEAHGAEGLAQLERTIAYLREA--GVLVIADAKRGDI-----GSTAEAYA 106 (278)
T ss_pred cHHHHHHHHHHHHHhcCC-cccEEeccHHHHHhcCchhhhHHHHHHHHHHHC--CCcEEEEeecCCh-----HHHHHHHH
Confidence 567888888988888864 34444 5565531 12234466777776 5788888776553 45566677
Q ss_pred HHHHh-CCCCeEEEEcCC-ChhHHHHHHHHHHhhcCCCEEE---EeCCC--CcccccccccccCCCCC-hHHHHHHHHHH
Q 025860 140 SIAES-CKRVVSVGINCT-PPRFISGLILIIKKVTAKPILI---YPNSG--EFYDADRKEWVQNTGVS-DEDFVSYVSKW 211 (247)
Q Consensus 140 ~~~~~-~~~~~avG~NC~-~p~~~~~~l~~l~~~~~~pl~v---yPNaG--~~~d~~~~~~~~~~~~~-~~~~~~~~~~~ 211 (247)
+.+.. ..++|++-+|+. +.+.+.+.++...+. +.-++| .-|.+ .+.+.. .... .+ -+...+.+..|
T Consensus 107 ~a~~~~~~g~DavTVhp~~G~d~l~~~~~~~~~~-~k~vfVlvlTSnp~s~~lq~~~----~~~~-~~l~~~V~~~a~~~ 180 (278)
T PRK00125 107 KAAFESPLEADAVTVSPYMGFDSLEPYLEYAEEH-GKGVFVLCRTSNPGGSDLQFLR----TADG-RPLYQHVADLAAAL 180 (278)
T ss_pred HHHhcCccCCcEEEECCcCCHHHHHHHHHHHHhc-CCEEEEEEeCCCCCHHHHHhhh----ccCC-CcHHHHHHHHHHHH
Confidence 76652 268999999996 788888887765443 233322 33443 121110 0000 01 12334444444
Q ss_pred HH---cCCeEEe-ecCCCChHHHHHHHHHhhC
Q 025860 212 CE---VGASLVG-GCCRTTPNTIKGIYRTLSN 239 (247)
Q Consensus 212 ~~---~G~~iIG-GCCGt~P~hI~al~~~l~~ 239 (247)
.+ .....+| =-|.|-|+.++.|++.+..
T Consensus 181 ~~~~~~~~g~~G~VVgaT~p~e~~~iR~~~~~ 212 (278)
T PRK00125 181 NNLGNCGYGSIGLVVGATFPPELAAVRKILGG 212 (278)
T ss_pred hccccCCCCCCEEEECCCCHHHHHHHHHhCCC
Confidence 43 1233355 3455669999999988643
No 191
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=84.23 E-value=23 Score=31.37 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEecCCC
Q 025860 66 ITVETLKDFHRRRVQVLVESAPDLIAFETIPN 97 (247)
Q Consensus 66 ~s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~ 97 (247)
.+.+++.+.=.+=++.|.++|+|.+++|.+.+
T Consensus 21 ~~~~~i~e~A~~ea~~l~~~GvD~viveN~~d 52 (257)
T TIGR00259 21 DNLNAVIDKAWKDAMALEEGGVDAVMFENFFD 52 (257)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 37889999888889999999999999999887
No 192
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=83.97 E-value=16 Score=32.01 Aligned_cols=96 Identities=19% Similarity=0.200 Sum_probs=68.8
Q ss_pred HHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCc------ccCCCcHHHHHHHHHhCCCCeE
Q 025860 77 RRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVN------VVSGDSLLECASIAESCKRVVS 150 (247)
Q Consensus 77 ~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~------l~~G~~~~~~~~~~~~~~~~~a 150 (247)
+.++.|++.|++-+++=|+. +.......+++++++ -.+++++.++++.. -.++.++.+.++.+.+ .++..
T Consensus 88 ~~v~~ll~~G~~rViiGt~a-v~~p~~v~~~~~~~g--~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~-~g~~~ 163 (241)
T COG0106 88 EDVEALLDAGVARVIIGTAA-VKNPDLVKELCEEYG--DRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEE-VGLAH 163 (241)
T ss_pred HHHHHHHHCCCCEEEEecce-ecCHHHHHHHHHHcC--CcEEEEEEccCCccccccccccccCCHHHHHHHHHh-cCCCe
Confidence 36777888999999999988 667777778888875 68888999987543 3356788899998876 46665
Q ss_pred EEEc-------CCChhHHHHHHHHHHhhcCCCEEE
Q 025860 151 VGIN-------CTPPRFISGLILIIKKVTAKPILI 178 (247)
Q Consensus 151 vG~N-------C~~p~~~~~~l~~l~~~~~~pl~v 178 (247)
|-+- |.+|. ..+++.+.+..+.|+++
T Consensus 164 ii~TdI~~DGtl~G~n--~~l~~~l~~~~~ipvia 196 (241)
T COG0106 164 ILYTDISRDGTLSGPN--VDLVKELAEAVDIPVIA 196 (241)
T ss_pred EEEEecccccccCCCC--HHHHHHHHHHhCcCEEE
Confidence 5543 23343 34666676677888643
No 193
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=83.88 E-value=25 Score=29.67 Aligned_cols=134 Identities=17% Similarity=0.085 Sum_probs=75.5
Q ss_pred HHHHHHHHhcCCCCEEEEecC----------------CCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHH
Q 025860 75 HRRRVQVLVESAPDLIAFETI----------------PNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLEC 138 (247)
Q Consensus 75 ~~~q~~~l~~~gvD~i~~ET~----------------~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~ 138 (247)
|.+.++.+.++|+|.|=+-.- .+.+.+..+++.+++.- +.|+.+-+....+. .+...+.
T Consensus 69 ~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~-~~~v~vk~r~~~~~----~~~~~~~ 143 (231)
T cd02801 69 LAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAV-PIPVTVKIRLGWDD----EEETLEL 143 (231)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhc-CCCEEEEEeeccCC----chHHHHH
Confidence 333666667789999966422 25666777888887653 35666655432111 1356667
Q ss_pred HHHHHhCCCCeEEEEcCCChh------HHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHH
Q 025860 139 ASIAESCKRVVSVGINCTPPR------FISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWC 212 (247)
Q Consensus 139 ~~~~~~~~~~~avG~NC~~p~------~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (247)
++.+.+ .+++.|-+.....+ .-...++.+++..+.|++ .|.|. .++++..+ ++
T Consensus 144 ~~~l~~-~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi--~~Ggi--------------~~~~d~~~----~l 202 (231)
T cd02801 144 AKALED-AGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVI--ANGDI--------------FSLEDALR----CL 202 (231)
T ss_pred HHHHHH-hCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEE--EeCCC--------------CCHHHHHH----HH
Confidence 777776 57888866664211 124555667666667754 35543 12443333 34
Q ss_pred Hc-CCeEEeecCC--CChHHHHHHH
Q 025860 213 EV-GASLVGGCCR--TTPNTIKGIY 234 (247)
Q Consensus 213 ~~-G~~iIGGCCG--t~P~hI~al~ 234 (247)
+. |+..|.=.-+ ..|...+.++
T Consensus 203 ~~~gad~V~igr~~l~~P~~~~~~~ 227 (231)
T cd02801 203 EQTGVDGVMIGRGALGNPWLFREIK 227 (231)
T ss_pred HhcCCCEEEEcHHhHhCCHHHHhhh
Confidence 43 6666553333 4666665554
No 194
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=83.82 E-value=8.1 Score=34.63 Aligned_cols=64 Identities=11% Similarity=0.097 Sum_probs=45.0
Q ss_pred HHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEE
Q 025860 77 RRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGI 153 (247)
Q Consensus 77 ~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~ 153 (247)
+|++..+++|+|.|++..|+ +++++.+++.+++.. ..+.+.++ .|.++..+.+... .++|.|-+
T Consensus 199 eea~ea~~~GaDiI~lDn~~-~e~l~~~v~~l~~~~--~~~~leas--------GGI~~~ni~~ya~--~GvD~is~ 262 (277)
T TIGR01334 199 EQALTVLQASPDILQLDKFT-PQQLHHLHERLKFFD--HIPTLAAA--------GGINPENIADYIE--AGIDLFIT 262 (277)
T ss_pred HHHHHHHHcCcCEEEECCCC-HHHHHHHHHHHhccC--CCEEEEEE--------CCCCHHHHHHHHh--cCCCEEEe
Confidence 35556677999999999855 899999998887542 34445553 5778888777654 47776643
No 195
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=83.75 E-value=29 Score=31.65 Aligned_cols=92 Identities=22% Similarity=0.312 Sum_probs=59.2
Q ss_pred CC-CEEEEecCCCHHHHHHHHH---HHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCCCh---
Q 025860 86 AP-DLIAFETIPNKIEAQAYAE---LLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTPP--- 158 (247)
Q Consensus 86 gv-D~i~~ET~~~~~E~~aa~~---~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~~p--- 158 (247)
|. |++.=|.+++-.-+..--+ .+.......|+.+++.-.+ =+.+.++++.+.+ .+++.|-+||..|
T Consensus 34 ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~gsd------p~~l~eaA~~~~~-~g~~~IdlN~GCP~~~ 106 (323)
T COG0042 34 GAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLGGSD------PELLAEAAKIAEE-LGADIIDLNCGCPSPK 106 (323)
T ss_pred CCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEecCCC------HHHHHHHHHHHHh-cCCCEEeeeCCCChHH
Confidence 55 9999998886544433211 1111112467666663211 1335667776666 4699999999754
Q ss_pred --------------hHHHHHHHHHHhhc-CCCEEEEeCCCC
Q 025860 159 --------------RFISGLILIIKKVT-AKPILIYPNSGE 184 (247)
Q Consensus 159 --------------~~~~~~l~~l~~~~-~~pl~vyPNaG~ 184 (247)
+.+..+++.+++.. ++|+.|.=-.|.
T Consensus 107 V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~ 147 (323)
T COG0042 107 VVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGW 147 (323)
T ss_pred hcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEeccc
Confidence 56677888888888 599988877764
No 196
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=83.66 E-value=33 Score=31.47 Aligned_cols=96 Identities=10% Similarity=0.025 Sum_probs=58.9
Q ss_pred HHHHhcCCCCEEEEec-CCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCC-
Q 025860 79 VQVLVESAPDLIAFET-IPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT- 156 (247)
Q Consensus 79 ~~~l~~~gvD~i~~ET-~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~- 156 (247)
++...+.|+|.|-+-| .+..+.++..++.+|+.+ ..+.+++... .. .+-+.+.+.++.+.+ .+++.|.+-=+
T Consensus 94 l~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G--~~v~~~l~~a--~~-~~~e~l~~~a~~~~~-~Ga~~i~i~DT~ 167 (337)
T PRK08195 94 LKMAYDAGVRVVRVATHCTEADVSEQHIGLARELG--MDTVGFLMMS--HM-APPEKLAEQAKLMES-YGAQCVYVVDSA 167 (337)
T ss_pred HHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCC--CeEEEEEEec--cC-CCHHHHHHHHHHHHh-CCCCEEEeCCCC
Confidence 4555678999876654 334445566667777764 4555444321 11 122334445555555 57887766544
Q ss_pred ---ChhHHHHHHHHHHhhc--CCCEEEEe
Q 025860 157 ---PPRFISGLILIIKKVT--AKPILIYP 180 (247)
Q Consensus 157 ---~p~~~~~~l~~l~~~~--~~pl~vyP 180 (247)
.|+.+..+++.+++.. +.|+.+.-
T Consensus 168 G~~~P~~v~~~v~~l~~~l~~~i~ig~H~ 196 (337)
T PRK08195 168 GALLPEDVRDRVRALRAALKPDTQVGFHG 196 (337)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 3999999999998875 56776554
No 197
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=83.57 E-value=27 Score=30.76 Aligned_cols=91 Identities=20% Similarity=0.191 Sum_probs=57.9
Q ss_pred HHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCe-EEEEcC
Q 025860 77 RRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVV-SVGINC 155 (247)
Q Consensus 77 ~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-avG~NC 155 (247)
+.++.+.++|||.+++=-.| .+|....++.+++.+ +.....++ ..++.+.+...+....+.. .+.+|-
T Consensus 106 ~f~~~~~~aGvdgviipDlp-~ee~~~~~~~~~~~g--l~~i~lv~--------P~T~~eri~~i~~~~~gfiy~vs~~G 174 (256)
T TIGR00262 106 EFYAKCKEVGVDGVLVADLP-LEESGDLVEAAKKHG--VKPIFLVA--------PNADDERLKQIAEKSQGFVYLVSRAG 174 (256)
T ss_pred HHHHHHHHcCCCEEEECCCC-hHHHHHHHHHHHHCC--CcEEEEEC--------CCCCHHHHHHHHHhCCCCEEEEECCC
Confidence 34666778999999887776 478888888888874 44443332 3445555444444333333 456553
Q ss_pred -CC-----hhHHHHHHHHHHhhcCCCEEE
Q 025860 156 -TP-----PRFISGLILIIKKVTAKPILI 178 (247)
Q Consensus 156 -~~-----p~~~~~~l~~l~~~~~~pl~v 178 (247)
++ +..+...++++++..+.|+.+
T Consensus 175 ~TG~~~~~~~~~~~~i~~lr~~~~~pi~v 203 (256)
T TIGR00262 175 VTGARNRAASALNELVKRLKAYSAKPVLV 203 (256)
T ss_pred CCCCcccCChhHHHHHHHHHhhcCCCEEE
Confidence 22 245788888888887788654
No 198
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=83.56 E-value=29 Score=30.13 Aligned_cols=89 Identities=11% Similarity=0.148 Sum_probs=57.1
Q ss_pred HHHHHhcCCCCEEEEecCC--CHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcC
Q 025860 78 RVQVLVESAPDLIAFETIP--NKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINC 155 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~--~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC 155 (247)
.++.+.++|+|.+++=-.| ..+|....++.+++.+ +.+.+.++ ..++++.+-..+....++..+++|=
T Consensus 93 ~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~G--l~~~~~v~--------p~T~~e~l~~~~~~~~~~l~msv~~ 162 (244)
T PRK13125 93 FLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKG--LKPVFFTS--------PKFPDLLIHRLSKLSPLFIYYGLRP 162 (244)
T ss_pred HHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcC--CCEEEEEC--------CCCCHHHHHHHHHhCCCEEEEEeCC
Confidence 4555677999999873222 1467888888888874 66665553 4566666555555445666678886
Q ss_pred C-C---hhHHHHHHHHHHhhc-CCCE
Q 025860 156 T-P---PRFISGLILIIKKVT-AKPI 176 (247)
Q Consensus 156 ~-~---p~~~~~~l~~l~~~~-~~pl 176 (247)
+ + +..+...++++++.. +.|+
T Consensus 163 ~~g~~~~~~~~~~i~~lr~~~~~~~i 188 (244)
T PRK13125 163 ATGVPLPVSVERNIKRVRNLVGNKYL 188 (244)
T ss_pred CCCCCchHHHHHHHHHHHHhcCCCCE
Confidence 4 2 455666677777665 3553
No 199
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=83.48 E-value=34 Score=30.92 Aligned_cols=139 Identities=13% Similarity=0.153 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHhcCCCCEEE-Ee---cCCCHHHHHH--------HHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHH
Q 025860 71 LKDFHRRRVQVLVESAPDLIA-FE---TIPNKIEAQA--------YAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLEC 138 (247)
Q Consensus 71 ~~~~~~~q~~~l~~~gvD~i~-~E---T~~~~~E~~a--------a~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~ 138 (247)
+.+.-.+.++.++++|+|.|. ++ ++-+.++.+. +++.+++.+.+.|++ -++ .|+. ..
T Consensus 175 it~~~~~~~~~~ieaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~il-h~c--------g~~~--~~ 243 (335)
T cd00717 175 LTDATIEYLKAQIEAGAQAVQIFDSWAGALSPEDFEEFVLPYLKRIIEEVKKRLPGVPVI-LFA--------KGAG--GL 243 (335)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEE-EEc--------CCCH--HH
Confidence 444455666777779999885 55 4455555543 333444432123443 232 1332 45
Q ss_pred HHHHHhCCCCeEEEEcCC-ChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCe
Q 025860 139 ASIAESCKRVVSVGINCT-PPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGAS 217 (247)
Q Consensus 139 ~~~~~~~~~~~avG~NC~-~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 217 (247)
+..+.+ .++++++++-. +.. .+ ++..+..+.++-|--. .. .. .++++..+.+++.++.+..
T Consensus 244 ~~~~~~-~~~~~~s~d~~~dl~---e~----k~~~g~~~~i~Gni~p------~~-l~---~~~e~i~~~v~~~l~~~~~ 305 (335)
T cd00717 244 LEDLAQ-LGADVVGLDWRVDLD---EA----RKRLGPKVALQGNLDP------AL-LY---APKEAIEKEVKRILKAFGG 305 (335)
T ss_pred HHHHHh-cCCCEEEeCCCCCHH---HH----HHHhCCCeEEEeCCCh------hh-hc---CCHHHHHHHHHHHHHHhCc
Confidence 666766 47899888875 322 22 2223333555555521 11 11 2468899999999886554
Q ss_pred ----EEe-ecC---CCChHHHHHHHHHhh
Q 025860 218 ----LVG-GCC---RTTPNTIKGIYRTLS 238 (247)
Q Consensus 218 ----iIG-GCC---Gt~P~hI~al~~~l~ 238 (247)
|+. ||. +|-++.|+++.++++
T Consensus 306 ~~gfIl~~gc~i~~~tp~eNi~a~v~a~~ 334 (335)
T cd00717 306 APGHIFNLGHGILPDTPPENVKALVEAVH 334 (335)
T ss_pred CCCceeecCCcCCCCcCHHHHHHHHHHHh
Confidence 554 454 588999999988765
No 200
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=83.21 E-value=25 Score=33.05 Aligned_cols=62 Identities=15% Similarity=0.037 Sum_probs=39.7
Q ss_pred CCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCCC----------------hhHHHHHHHHHHhhcCCCEE
Q 025860 114 KIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTP----------------PRFISGLILIIKKVTAKPIL 177 (247)
Q Consensus 114 ~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~~----------------p~~~~~~l~~l~~~~~~pl~ 177 (247)
+.|+++|+.-. . +=+...+.++.+.+ .++++|=+|-+. |+.+..+++.+++..++|++
T Consensus 113 ~~pvIaSi~~~---~--s~~~~~~~a~~~e~-~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~ 186 (385)
T PLN02495 113 DRILIASIMEE---Y--NKDAWEEIIERVEE-TGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPVW 186 (385)
T ss_pred CCcEEEEccCC---C--CHHHHHHHHHHHHh-cCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCceE
Confidence 67999998410 0 11233445555555 578988887653 34566677777877889988
Q ss_pred EEeC
Q 025860 178 IYPN 181 (247)
Q Consensus 178 vyPN 181 (247)
+.-.
T Consensus 187 vKLs 190 (385)
T PLN02495 187 AKMT 190 (385)
T ss_pred EEeC
Confidence 7654
No 201
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=82.95 E-value=11 Score=33.84 Aligned_cols=65 Identities=15% Similarity=0.283 Sum_probs=44.9
Q ss_pred CCCeEEEEcCCCh--------------------------hHHHHHHHHHHhhc--CCCEEEEeCCCCcccccccccccCC
Q 025860 146 KRVVSVGINCTPP--------------------------RFISGLILIIKKVT--AKPILIYPNSGEFYDADRKEWVQNT 197 (247)
Q Consensus 146 ~~~~avG~NC~~p--------------------------~~~~~~l~~l~~~~--~~pl~vyPNaG~~~d~~~~~~~~~~ 197 (247)
.|+|+|=|||.+. ..+.+.++.+++.. +.||++.-|.....+.
T Consensus 153 aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~--------- 223 (327)
T cd02803 153 AGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPG--------- 223 (327)
T ss_pred cCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCC---------
Confidence 5999999999731 23456777777765 6789998887532111
Q ss_pred CCChHHHHHHHHHHHHcCCeEE
Q 025860 198 GVSDEDFVSYVSKWCEVGASLV 219 (247)
Q Consensus 198 ~~~~~~~~~~~~~~~~~G~~iI 219 (247)
..+++++.+.++.+.+.|+.+|
T Consensus 224 g~~~~e~~~la~~l~~~G~d~i 245 (327)
T cd02803 224 GLTLEEAIEIAKALEEAGVDAL 245 (327)
T ss_pred CCCHHHHHHHHHHHHHcCCCEE
Confidence 1346777788888888888777
No 202
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=82.93 E-value=14 Score=32.14 Aligned_cols=100 Identities=11% Similarity=0.052 Sum_probs=59.9
Q ss_pred HHHHHHhcCCCCEEEEecC--CCHHHHHHHHHHHHhhCCCCcEEEEEEEcCC-----CcccCCCcHHHHHHHHHhCCCCe
Q 025860 77 RRVQVLVESAPDLIAFETI--PNKIEAQAYAELLEEENIKIPAWFSFNSKDG-----VNVVSGDSLLECASIAESCKRVV 149 (247)
Q Consensus 77 ~q~~~l~~~gvD~i~~ET~--~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~-----~~l~~G~~~~~~~~~~~~~~~~~ 149 (247)
++++.+++.|+|-+.+=|. .+++-++. ++++++ ..+.+|+.+.+. +-..+..++.+.++.+.+ .++.
T Consensus 88 edv~~~l~~Ga~kvviGs~~l~~p~l~~~---i~~~~~--~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~-~G~~ 161 (241)
T PRK14024 88 ESLEAALATGCARVNIGTAALENPEWCAR---VIAEHG--DRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDS-AGCS 161 (241)
T ss_pred HHHHHHHHCCCCEEEECchHhCCHHHHHH---HHHHhh--hhEEEEEEEeccEeccCCeeecCccHHHHHHHHHh-cCCC
Confidence 4566677789999887653 44444444 444443 236677766432 212244567788888876 5777
Q ss_pred EEEEcCCChhH-----HHHHHHHHHhhcCCCEEEEeCCCC
Q 025860 150 SVGINCTPPRF-----ISGLILIIKKVTAKPILIYPNSGE 184 (247)
Q Consensus 150 avG~NC~~p~~-----~~~~l~~l~~~~~~pl~vyPNaG~ 184 (247)
.+-++....+. -..+++.+.+..+.|++ .|+|.
T Consensus 162 ~iiv~~~~~~g~~~G~d~~~i~~i~~~~~ipvi--asGGi 199 (241)
T PRK14024 162 RYVVTDVTKDGTLTGPNLELLREVCARTDAPVV--ASGGV 199 (241)
T ss_pred EEEEEeecCCCCccCCCHHHHHHHHhhCCCCEE--EeCCC
Confidence 77666632111 15667777777788854 46653
No 203
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=82.83 E-value=13 Score=34.18 Aligned_cols=73 Identities=14% Similarity=0.049 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCCCCEEEEecC----------CCHHHHHHHHHHHHhhCC----CCcEEEEEEEcCCCcccCCCcHHHHH
Q 025860 74 FHRRRVQVLVESAPDLIAFETI----------PNKIEAQAYAELLEEENI----KIPAWFSFNSKDGVNVVSGDSLLECA 139 (247)
Q Consensus 74 ~~~~q~~~l~~~gvD~i~~ET~----------~~~~E~~aa~~~~~~~~~----~~pv~is~~~~~~~~l~~G~~~~~~~ 139 (247)
.|.+.++.+. .++|+|-+.-. .+...+..+++.+++.-. ++||++-++... +-+.+.+.+
T Consensus 158 d~~~~~~~~~-~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~-----~~~~~~~ia 231 (344)
T PRK05286 158 DYLICLEKLY-PYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDL-----SDEELDDIA 231 (344)
T ss_pred HHHHHHHHHH-hhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCC-----CHHHHHHHH
Confidence 3445666654 36898877631 233455666777776432 289998886320 112356677
Q ss_pred HHHHhCCCCeEEEE
Q 025860 140 SIAESCKRVVSVGI 153 (247)
Q Consensus 140 ~~~~~~~~~~avG~ 153 (247)
+.+.+ .++++|-+
T Consensus 232 ~~l~~-~Gadgi~~ 244 (344)
T PRK05286 232 DLALE-HGIDGVIA 244 (344)
T ss_pred HHHHH-hCCcEEEE
Confidence 76666 47776544
No 204
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=82.72 E-value=8.2 Score=37.24 Aligned_cols=67 Identities=7% Similarity=0.043 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcCCCCEEEEec-CCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEE
Q 025860 74 FHRRRVQVLVESAPDLIAFET-IPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVG 152 (247)
Q Consensus 74 ~~~~q~~~l~~~gvD~i~~ET-~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG 152 (247)
...++++.|+++|||.|++-+ -.+..-...+++.+++..+++|+++.+ +.+.+.+.. +.+ .|+++|.
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~----------~~t~~~~~~-l~~-~G~d~i~ 292 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGN----------VVSAEGVRD-LLE-AGANIIK 292 (475)
T ss_pred cHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEec----------cCCHHHHHH-HHH-hCCCEEE
Confidence 455799999999999999985 344445555677777765578999843 445555555 434 4788775
No 205
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=82.71 E-value=41 Score=31.30 Aligned_cols=98 Identities=17% Similarity=0.193 Sum_probs=61.7
Q ss_pred HHHHHhcCCCCEEEEec-CCCH--------------HHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHH
Q 025860 78 RVQVLVESAPDLIAFET-IPNK--------------IEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIA 142 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET-~~~~--------------~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~ 142 (247)
-++.+.+.|+|.+-+=. .++. +.++.+++.+++.+ . -+.|++.+.++. +-+-+.+.++.+
T Consensus 80 di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G--~--~v~~~~ed~~r~-~~~~l~~~~~~~ 154 (378)
T PRK11858 80 DIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHG--L--YVSFSAEDASRT-DLDFLIEFAKAA 154 (378)
T ss_pred HHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC--C--eEEEEeccCCCC-CHHHHHHHHHHH
Confidence 35566778999775443 3332 34445666666653 3 355666655543 334455566666
Q ss_pred HhCCCCeEEEEcCC----ChhHHHHHHHHHHhhcCCCEEEEeC
Q 025860 143 ESCKRVVSVGINCT----PPRFISGLILIIKKVTAKPILIYPN 181 (247)
Q Consensus 143 ~~~~~~~avG~NC~----~p~~~~~~l~~l~~~~~~pl~vyPN 181 (247)
.+ .+++.|.+-=+ .|+.+..+++.+++..+.||.+...
T Consensus 155 ~~-~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~H 196 (378)
T PRK11858 155 EE-AGADRVRFCDTVGILDPFTMYELVKELVEAVDIPIEVHCH 196 (378)
T ss_pred Hh-CCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 65 57776655433 3999999999998877888877665
No 206
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=82.68 E-value=39 Score=30.98 Aligned_cols=101 Identities=16% Similarity=0.168 Sum_probs=57.4
Q ss_pred HHHHHhcCCCCEEEEecCCCH-H--------------------------HHHHHHHHHHhhCCCCcEEEEEEEcCCCccc
Q 025860 78 RVQVLVESAPDLIAFETIPNK-I--------------------------EAQAYAELLEEENIKIPAWFSFNSKDGVNVV 130 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~-~--------------------------E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~ 130 (247)
.++.+.+.|..++.+-|++.- + .+...++-+++...+.|+.+|+.-.. .+.
T Consensus 71 ~~~~~~~~G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n~G~~~~l~~i~~~~~~~~i~vsi~~~~--~~~ 148 (335)
T TIGR01036 71 AIDALGAMGFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGADVLVERLKRARYKGPIGINIGKNK--DTP 148 (335)
T ss_pred HHHHHHhcCCCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCChhHHHHHHHHhhccCCCcEEEEEeCCC--CCC
Confidence 444555678888887777642 1 12333444443333579999985332 223
Q ss_pred CCCcHHHHHHHHHhC-CCCeEEEEcCCC-----------hhHHHHHHHHHHhhcC-------CCEEEEe
Q 025860 131 SGDSLLECASIAESC-KRVVSVGINCTP-----------PRFISGLILIIKKVTA-------KPILIYP 180 (247)
Q Consensus 131 ~G~~~~~~~~~~~~~-~~~~avG~NC~~-----------p~~~~~~l~~l~~~~~-------~pl~vyP 180 (247)
.+.+.++.++.+... ..+++|=+|=++ |+.+.++++.+++..+ +|+++.-
T Consensus 149 ~~~~~~dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKL 217 (335)
T TIGR01036 149 SEDAKEDYAACLRKLGPLADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKI 217 (335)
T ss_pred cccCHHHHHHHHHHHhhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEe
Confidence 344556655555431 137887776443 3466777777766554 8887654
No 207
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=82.59 E-value=36 Score=30.56 Aligned_cols=39 Identities=26% Similarity=0.299 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHcCCeEEeecCC-CChHHHHHHHHHhhC
Q 025860 201 DEDFVSYVSKWCEVGASLVGGCCR-TTPNTIKGIYRTLSN 239 (247)
Q Consensus 201 ~~~~~~~~~~~~~~G~~iIGGCCG-t~P~hI~al~~~l~~ 239 (247)
-++-.+.++.+.++||..|==-++ .++++|+.+.+.++.
T Consensus 168 ~~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~ 207 (285)
T TIGR02320 168 MEDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRN 207 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhh
Confidence 455667788899999887765554 889999999888864
No 208
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=82.39 E-value=41 Score=32.61 Aligned_cols=64 Identities=11% Similarity=0.084 Sum_probs=39.9
Q ss_pred HHHHHHHhcCCCCEEEEecC-CCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEE
Q 025860 76 RRRVQVLVESAPDLIAFETI-PNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSV 151 (247)
Q Consensus 76 ~~q~~~l~~~gvD~i~~ET~-~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~av 151 (247)
.++++.|+++|+|+|.+-+- .+-..+...++.+++..+++|+++ + +..+.+++...+ + .|+++|
T Consensus 243 ~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~a-------G---~V~t~~~a~~~~-~-aGad~I 307 (495)
T PTZ00314 243 IERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIA-------G---NVVTADQAKNLI-D-AGADGL 307 (495)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEE-------C---CcCCHHHHHHHH-H-cCCCEE
Confidence 45889999999999998752 222333445666666544677775 1 234555555544 3 477776
No 209
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=82.12 E-value=42 Score=30.93 Aligned_cols=114 Identities=16% Similarity=0.232 Sum_probs=64.7
Q ss_pred CeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcE
Q 025860 38 PILVAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPA 117 (247)
Q Consensus 38 ~~~VaGsiGP~g~~l~~g~eY~g~y~~~~s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv 117 (247)
..+|.+++ |+| .|.. +.++..+ .-.+.+.++|+|.+=+|--. .+...+++.+-+. ++||
T Consensus 96 ~a~vVaDm-Pfg-----------SY~~--s~e~av~---nA~rl~~eaGa~aVKlEGg~--~~~~~~I~~l~~~--GIPV 154 (332)
T PLN02424 96 RPLLVGDL-PFG-----------SYES--STDQAVE---SAVRMLKEGGMDAVKLEGGS--PSRVTAAKAIVEA--GIAV 154 (332)
T ss_pred CCEEEeCC-CCC-----------CCCC--CHHHHHH---HHHHHHHHhCCcEEEECCCc--HHHHHHHHHHHHc--CCCE
Confidence 56777777 555 3432 5555444 23333457999999999753 3333444444454 5899
Q ss_pred EEEEEEcC------CCcccCCCcHHHHHHH------HHhCCCCeEEEEcCCChhHHHHHHHHHHhhcCCCEE
Q 025860 118 WFSFNSKD------GVNVVSGDSLLECASI------AESCKRVVSVGINCTPPRFISGLILIIKKVTAKPIL 177 (247)
Q Consensus 118 ~is~~~~~------~~~l~~G~~~~~~~~~------~~~~~~~~avG~NC~~p~~~~~~l~~l~~~~~~pl~ 177 (247)
+--+=+.. .+.-..|.+-+++.+. +.+ .|+++|=+-|...+ +.+.+.+..++|.+
T Consensus 155 ~gHiGLtPQs~~~lGGykvqGr~~~~a~~li~dA~ale~-AGAf~ivLE~Vp~~----la~~It~~l~IPtI 221 (332)
T PLN02424 155 MGHVGLTPQAISVLGGFRPQGRTAESAVKVVETALALQE-AGCFAVVLECVPAP----VAAAITSALQIPTI 221 (332)
T ss_pred EEeecccceeehhhcCccccCCCHHHHHHHHHHHHHHHH-cCCcEEEEcCCcHH----HHHHHHHhCCCCEE
Confidence 83332221 1211245554443332 333 69999999999644 55555556677753
No 210
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=82.12 E-value=33 Score=30.01 Aligned_cols=132 Identities=11% Similarity=0.086 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCCChhHHHHHHHHHHhhcCCCE
Q 025860 97 NKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTPPRFISGLILIIKKVTAKPI 176 (247)
Q Consensus 97 ~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~~p~~~~~~l~~l~~~~~~pl 176 (247)
+++|+...++.+.+..+..|+++-+.+ -.|.+.+++++.+.....+-+-|||.-+-..+.+.++.++.. ..|+
T Consensus 56 tl~em~~~~~~I~r~~~~~pviaD~~~------G~g~~~~~~~~~~~~l~~aGa~gv~iED~~~~~~~i~ai~~a-~i~V 128 (240)
T cd06556 56 PVNDVPYHVRAVRRGAPLALIVADLPF------GAYGAPTAAFELAKTFMRAGAAGVKIEGGEWHIETLQMLTAA-AVPV 128 (240)
T ss_pred CHHHHHHHHHHHHhhCCCCCEEEeCCC------CCCcCHHHHHHHHHHHHHcCCcEEEEcCcHHHHHHHHHHHHc-CCeE
Confidence 466777777766654323687766632 145565666444432222334556664323445566666654 3666
Q ss_pred EEEeCCCCc----ccccccccccCCCCChHHHHHHHHHHHHcCCeEEeecCCCChHHHHHHHHHhh
Q 025860 177 LIYPNSGEF----YDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCRTTPNTIKGIYRTLS 238 (247)
Q Consensus 177 ~vyPNaG~~----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iIGGCCGt~P~hI~al~~~l~ 238 (247)
++.=.+-.. .++-...+... ...++..+.++.+.++|+..|==-|- +++.++.+.+.++
T Consensus 129 iaRtd~~pq~~~~~gg~~~~~~~~--~~~~~ai~Ra~ay~~AGAd~i~~e~~-~~e~~~~i~~~~~ 191 (240)
T cd06556 129 IAHTGLTPQSVNTSGGDEGQYRGD--EAGEQLIADALAYAPAGADLIVMECV-PVELAKQITEALA 191 (240)
T ss_pred EEEeCCchhhhhccCCceeeccCH--HHHHHHHHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHhCC
Confidence 554443210 00000011111 12345666678888999887765555 9999999998765
No 211
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=81.89 E-value=29 Score=28.92 Aligned_cols=66 Identities=5% Similarity=0.117 Sum_probs=44.4
Q ss_pred HHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEc
Q 025860 78 RVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGIN 154 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~N 154 (247)
+++.+.++|+|+|.+=-.........+++.+++. ++++.+.+.- ..++++++... .+ .+++.|+++
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~--g~~~~~~~~~-------~~t~~~~~~~~-~~-~g~d~v~~~ 133 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADDATIKGAVKAAKKH--GKEVQVDLIN-------VKDKVKRAKEL-KE-LGADYIGVH 133 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHc--CCEEEEEecC-------CCChHHHHHHH-HH-cCCCEEEEc
Confidence 6777888999999765444444567777888876 5788875421 23455555543 34 478999987
No 212
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=81.70 E-value=42 Score=30.73 Aligned_cols=93 Identities=15% Similarity=0.117 Sum_probs=58.6
Q ss_pred HHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCC-CCcEEEEEEEcCCCcccCCCcHHH--HHHHHHhC-CCCeEE
Q 025860 76 RRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENI-KIPAWFSFNSKDGVNVVSGDSLLE--CASIAESC-KRVVSV 151 (247)
Q Consensus 76 ~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~-~~pv~is~~~~~~~~l~~G~~~~~--~~~~~~~~-~~~~av 151 (247)
++.++++.+.|-=-++.+ + ++++.... +++.+. .+++.+++ |.+.++ -+..+.+. ..++.|
T Consensus 48 ~~LA~~a~~~G~~~i~hK-~-~~E~~~sf---vrk~k~~~L~v~~Sv----------G~t~e~~~r~~~lv~a~~~~d~i 112 (321)
T TIGR01306 48 EKLAEQLAENGYFYIMHR-F-DEESRIPF---IKDMQERGLFASISV----------GVKACEYEFVTQLAEEALTPEYI 112 (321)
T ss_pred HHHHHHHHHcCCEEEEec-C-CHHHHHHH---HHhccccccEEEEEc----------CCCHHHHHHHHHHHhcCCCCCEE
Confidence 345666666788888888 4 66665553 344321 24444433 444332 33334442 226999
Q ss_pred EEcCC--ChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 025860 152 GINCT--PPRFISGLILIIKKVTAKPILIYPNSG 183 (247)
Q Consensus 152 G~NC~--~p~~~~~~l~~l~~~~~~pl~vyPNaG 183 (247)
.+-.. +...+...++.+++....|+++-.|-+
T Consensus 113 ~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~ 146 (321)
T TIGR01306 113 TIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVG 146 (321)
T ss_pred EEeCccCchHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 99886 478889999999998888888888764
No 213
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=81.60 E-value=9.4 Score=34.55 Aligned_cols=63 Identities=11% Similarity=0.169 Sum_probs=46.2
Q ss_pred HHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcC
Q 025860 77 RRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINC 155 (247)
Q Consensus 77 ~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC 155 (247)
+|+...+++|+|.|++.+|+ ++|++.+++.++. .+.+..+ .|.++..+.+... .|+|.|.+-+
T Consensus 219 eea~ea~~~gaDiI~LDn~s-~e~~~~av~~~~~-----~~~ieaS--------GGI~~~ni~~yA~--tGVD~Is~ga 281 (296)
T PRK09016 219 DELDQALKAGADIIMLDNFT-TEQMREAVKRTNG-----RALLEVS--------GNVTLETLREFAE--TGVDFISVGA 281 (296)
T ss_pred HHHHHHHHcCCCEEEeCCCC-hHHHHHHHHhhcC-----CeEEEEE--------CCCCHHHHHHHHh--cCCCEEEeCc
Confidence 45566677999999999988 7999999986542 3333432 4678887777654 5899888876
No 214
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=81.53 E-value=36 Score=29.75 Aligned_cols=98 Identities=13% Similarity=0.191 Sum_probs=60.2
Q ss_pred HHHHHhcCCCCEEEEec-CCCH--------------HHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHH
Q 025860 78 RVQVLVESAPDLIAFET-IPNK--------------IEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIA 142 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET-~~~~--------------~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~ 142 (247)
.++...+.|+|.|-+-. .++. +.++.+++.+++.+ . .++|.+.+.++. +-+-+.+.++.+
T Consensus 74 ~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G--~--~v~~~~~~~~~~-~~~~~~~~~~~~ 148 (259)
T cd07939 74 DIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRG--L--FVSVGAEDASRA-DPDFLIEFAEVA 148 (259)
T ss_pred HHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC--C--eEEEeeccCCCC-CHHHHHHHHHHH
Confidence 34556678999875543 3322 34445666666653 3 345666655442 233444555555
Q ss_pred HhCCCCeEEEEcCC----ChhHHHHHHHHHHhhcCCCEEEEeC
Q 025860 143 ESCKRVVSVGINCT----PPRFISGLILIIKKVTAKPILIYPN 181 (247)
Q Consensus 143 ~~~~~~~avG~NC~----~p~~~~~~l~~l~~~~~~pl~vyPN 181 (247)
.+ .+++.|.+.=+ .|+.+..++..+++..+.||.+...
T Consensus 149 ~~-~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~H 190 (259)
T cd07939 149 QE-AGADRLRFADTVGILDPFTTYELIRRLRAATDLPLEFHAH 190 (259)
T ss_pred HH-CCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 55 57887766543 3999999999998876677766553
No 215
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=81.50 E-value=26 Score=31.14 Aligned_cols=101 Identities=12% Similarity=0.094 Sum_probs=60.4
Q ss_pred HHHHHhcCCCCEEEEecCCCH---------------HHHHHHHHHHHhhCCCCcEEEEEE--EcCCCcccCCCcHHHHHH
Q 025860 78 RVQVLVESAPDLIAFETIPNK---------------IEAQAYAELLEEENIKIPAWFSFN--SKDGVNVVSGDSLLECAS 140 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~---------------~E~~aa~~~~~~~~~~~pv~is~~--~~~~~~l~~G~~~~~~~~ 140 (247)
-++..++.|+|.|-+-.-.|- +.++.+++.+++.+...-+.++.+ +.+.++. +-+-+.+.++
T Consensus 78 dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~-~~~~~~~~~~ 156 (274)
T cd07938 78 GAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEV-PPERVAEVAE 156 (274)
T ss_pred HHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCC-CHHHHHHHHH
Confidence 456667789998766543332 333445666676653333334433 4444443 3333445666
Q ss_pred HHHhCCCCeEEEEcCC----ChhHHHHHHHHHHhhc-CCCEEEEe
Q 025860 141 IAESCKRVVSVGINCT----PPRFISGLILIIKKVT-AKPILIYP 180 (247)
Q Consensus 141 ~~~~~~~~~avG~NC~----~p~~~~~~l~~l~~~~-~~pl~vyP 180 (247)
.+.+ .+++.|.+-=+ .|..+..+++.+++.. +.||.+.-
T Consensus 157 ~~~~-~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~ 200 (274)
T cd07938 157 RLLD-LGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALHF 200 (274)
T ss_pred HHHH-cCCCEEEECCCCCccCHHHHHHHHHHHHHHCCCCeEEEEE
Confidence 6665 58888777654 4999999999998765 36665544
No 216
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=81.49 E-value=23 Score=30.67 Aligned_cols=94 Identities=7% Similarity=0.045 Sum_probs=57.2
Q ss_pred HHHHHHhcCCCCEEEEecC--CCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCc------ccCCCcHHHHHHHHHhCCCC
Q 025860 77 RRVQVLVESAPDLIAFETI--PNKIEAQAYAELLEEENIKIPAWFSFNSKDGVN------VVSGDSLLECASIAESCKRV 148 (247)
Q Consensus 77 ~q~~~l~~~gvD~i~~ET~--~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~------l~~G~~~~~~~~~~~~~~~~ 148 (247)
++++.+++.|+|-+++-|. .+++ .+-+++++++ +-.+++|+.+..++. ..++.++.+.++.+.+ .++
T Consensus 86 e~~~~~l~~Ga~kvvigt~a~~~p~---~~~~~~~~~g-~~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~-~g~ 160 (232)
T PRK13586 86 EKAKRLLSLDVNALVFSTIVFTNFN---LFHDIVREIG-SNRVLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNE-LEL 160 (232)
T ss_pred HHHHHHHHCCCCEEEECchhhCCHH---HHHHHHHHhC-CCCEEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHh-cCC
Confidence 4566677789999988654 4554 3444566665 457999999832222 2245578889998876 466
Q ss_pred eEEEEcCCChhH-----HHHHHHHHHhhcCCCE
Q 025860 149 VSVGINCTPPRF-----ISGLILIIKKVTAKPI 176 (247)
Q Consensus 149 ~avG~NC~~p~~-----~~~~l~~l~~~~~~pl 176 (247)
..|-++-.+-+. =..+++.+.+. ..|+
T Consensus 161 ~~ii~tdI~~dGt~~G~d~el~~~~~~~-~~~v 192 (232)
T PRK13586 161 LGIIFTYISNEGTTKGIDYNVKDYARLI-RGLK 192 (232)
T ss_pred CEEEEecccccccCcCcCHHHHHHHHhC-CCCE
Confidence 666666632111 13456666554 4453
No 217
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=81.37 E-value=37 Score=29.82 Aligned_cols=42 Identities=19% Similarity=0.248 Sum_probs=33.7
Q ss_pred CChHHHHHHHHHHHHcCCeEEeecCCC----ChHHHHHHHHHhhCCC
Q 025860 199 VSDEDFVSYVSKWCEVGASLVGGCCRT----TPNTIKGIYRTLSNRS 241 (247)
Q Consensus 199 ~~~~~~~~~~~~~~~~G~~iIGGCCGt----~P~hI~al~~~l~~~~ 241 (247)
.+++.+.+.++++.+.|+..|. .|-| +|+.+..+-+.+++.-
T Consensus 140 ~~~~~~~~~~~~~~~~G~~~i~-l~DT~G~~~P~~v~~lv~~l~~~~ 185 (268)
T cd07940 140 TDLDFLIEVVEAAIEAGATTIN-IPDTVGYLTPEEFGELIKKLKENV 185 (268)
T ss_pred CCHHHHHHHHHHHHHcCCCEEE-ECCCCCCCCHHHHHHHHHHHHHhC
Confidence 3588889999999999999886 4444 9999998887876643
No 218
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=81.32 E-value=22 Score=31.40 Aligned_cols=101 Identities=11% Similarity=0.051 Sum_probs=63.3
Q ss_pred HHHHHHhcCCCCEEEEecCCCHH---HHHHHHHHHHhhCCCCcEEEEEEEc---CCC-c-------ccCCCcHH-HHHHH
Q 025860 77 RRVQVLVESAPDLIAFETIPNKI---EAQAYAELLEEENIKIPAWFSFNSK---DGV-N-------VVSGDSLL-ECASI 141 (247)
Q Consensus 77 ~q~~~l~~~gvD~i~~ET~~~~~---E~~aa~~~~~~~~~~~pv~is~~~~---~~~-~-------l~~G~~~~-~~~~~ 141 (247)
++++.++++|+|-+.+-|.---+ .....-++.++++ +-.+++++.+. ++. + -.++.++. +.++.
T Consensus 88 e~v~~~l~aGa~rVvIGS~av~~~~i~~~~~~~i~~~fG-~~~IvvsiD~k~~~~g~~~V~~~GW~~~t~~~~~~e~~~~ 166 (253)
T TIGR02129 88 TNAQEWLDEGASHVIVTSWLFTKGKFDLKRLKEIVSLVG-KDRLIVDLSCRKTQDGRWIVAMNKWQTITDLELNAETLEE 166 (253)
T ss_pred HHHHHHHHcCCCEEEECcHHHhCCCCCHHHHHHHHHHhC-CCCEEEEEEEEEcCCCcEEEEECCCcccCCCChHHHHHHH
Confidence 36667778999999998743111 1334445566675 45799999986 321 1 22455666 88888
Q ss_pred HHhCCCCeEEEEcCCChhHH-----HHHHHHHHhhcCCCEEEEe
Q 025860 142 AESCKRVVSVGINCTPPRFI-----SGLILIIKKVTAKPILIYP 180 (247)
Q Consensus 142 ~~~~~~~~avG~NC~~p~~~-----~~~l~~l~~~~~~pl~vyP 180 (247)
+.+ . +..|-++-.+-+.+ ..+++.+.+..+.|+++--
T Consensus 167 ~~~-~-~~~il~TdI~rDGtl~G~dlel~~~l~~~~~ipVIASG 208 (253)
T TIGR02129 167 LSK-Y-CDEFLIHAADVEGLCKGIDEELVSKLGEWSPIPITYAG 208 (253)
T ss_pred HHh-h-CCEEEEeeecccCccccCCHHHHHHHHhhCCCCEEEEC
Confidence 765 3 66777766432221 4567777777788876543
No 219
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=81.30 E-value=10 Score=33.99 Aligned_cols=62 Identities=8% Similarity=0.079 Sum_probs=44.1
Q ss_pred HHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcC
Q 025860 78 RVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINC 155 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC 155 (247)
|+...+++|+|.|++..|+ ++|++.+++.++. ..| +..+ .|.+++.+.+... .|+|.|.+-.
T Consensus 206 ea~ea~~~gaDiI~LDn~s-~e~l~~av~~~~~---~~~--leaS--------GGI~~~ni~~yA~--tGVD~Is~Ga 267 (281)
T PRK06106 206 QLEEALELGVDAVLLDNMT-PDTLREAVAIVAG---RAI--TEAS--------GRITPETAPAIAA--SGVDLISVGW 267 (281)
T ss_pred HHHHHHHcCCCEEEeCCCC-HHHHHHHHHHhCC---Cce--EEEE--------CCCCHHHHHHHHh--cCCCEEEeCh
Confidence 4444567999999999986 8999999987653 223 3332 5778887777553 5899888766
No 220
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=80.92 E-value=42 Score=30.22 Aligned_cols=142 Identities=13% Similarity=0.156 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHhcCCCCEE-EEecCC-----CHHHHHHHH-----HHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHH
Q 025860 71 LKDFHRRRVQVLVESAPDLI-AFETIP-----NKIEAQAYA-----ELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECA 139 (247)
Q Consensus 71 ~~~~~~~q~~~l~~~gvD~i-~~ET~~-----~~~E~~aa~-----~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~ 139 (247)
+.+...+.++.++++|+|+| ++++.. +.++.+... +.++... +.|+++-+ | |.. ...+
T Consensus 169 it~~~~~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~-~~~~ilh~-c--------G~~-~~~l 237 (326)
T cd03307 169 LTEACIEYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELH-GCPTILHI-C--------GNT-TPIL 237 (326)
T ss_pred HHHHHHHHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHh-cCCcEEEE-C--------CCC-hhHH
Confidence 33344455666677999988 666543 556655432 2333332 23555432 3 221 2345
Q ss_pred HHHHhCCCCeEEEEcCCChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEE
Q 025860 140 SIAESCKRVVSVGINCTPPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLV 219 (247)
Q Consensus 140 ~~~~~~~~~~avG~NC~~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iI 219 (247)
..+.+ .+++++++--. ..+..+. +..+..+.++-|-... .-... -++++..+.+++.++.|.-|+
T Consensus 238 ~~~~~-~g~d~~~~d~~--~dl~e~~----~~~g~~~~i~Gnidp~------~~l~~--gt~e~i~~~~~~~l~~g~~Il 302 (326)
T cd03307 238 EYIAQ-CGFDGISVDEK--VDVKTAK----EIVGGRAALIGNVSPS------QTLLN--GTPEDVKAEARKCLEDGVDIL 302 (326)
T ss_pred HHHHH-cCCCeeccccc--CCHHHHH----HHcCCceEEEeCCChH------HHhcC--CCHHHHHHHHHHHHHccCCEe
Confidence 55555 36676554322 1222222 2223336677665221 00111 358889999999999887777
Q ss_pred eecCC----CChHHHHHHHHHhh
Q 025860 220 GGCCR----TTPNTIKGIYRTLS 238 (247)
Q Consensus 220 GGCCG----t~P~hI~al~~~l~ 238 (247)
+--|| |-++.++++.++++
T Consensus 303 ~~Gc~i~~~tp~env~a~v~a~~ 325 (326)
T cd03307 303 APGCGIAPRTPLANLKAMVEARK 325 (326)
T ss_pred cCcCCCCCCCCHHHHHHHHHHHh
Confidence 77777 67899999988765
No 221
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=80.77 E-value=13 Score=32.50 Aligned_cols=99 Identities=20% Similarity=0.240 Sum_probs=61.2
Q ss_pred HHHHhcCCCCEEEEecCCCHHHHHH-HHHHHHhhCCCCcEEEEEEEcCCCcc--cCCCcHHHHHHHHHhCCCCeEEEEcC
Q 025860 79 VQVLVESAPDLIAFETIPNKIEAQA-YAELLEEENIKIPAWFSFNSKDGVNV--VSGDSLLECASIAESCKRVVSVGINC 155 (247)
Q Consensus 79 ~~~l~~~gvD~i~~ET~~~~~E~~a-a~~~~~~~~~~~pv~is~~~~~~~~l--~~G~~~~~~~~~~~~~~~~~avG~NC 155 (247)
+++|..-|+.=|.+=| |=..++-. +.+.+.+.+.+...+.+|-..++... .+.+++.+++..+.. .++++|=+-|
T Consensus 112 ~~AL~alg~~RIalvT-PY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~-~~aDAifisC 189 (239)
T TIGR02990 112 VDGLAALGVRRISLLT-PYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFD-PDADALFLSC 189 (239)
T ss_pred HHHHHHcCCCEEEEEC-CCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcC-CCCCEEEEeC
Confidence 3445555777777777 43444433 34456666544555556555544432 244556666665544 6899999999
Q ss_pred CChhHHHHHHHHHHhhcCCCEEEEeC
Q 025860 156 TPPRFISGLILIIKKVTAKPILIYPN 181 (247)
Q Consensus 156 ~~p~~~~~~l~~l~~~~~~pl~vyPN 181 (247)
+.- ....+++.+.+..++|+ +-.|
T Consensus 190 TnL-rt~~vi~~lE~~lGkPV-lsSN 213 (239)
T TIGR02990 190 TAL-RAATCAQRIEQAIGKPV-VTSN 213 (239)
T ss_pred CCc-hhHHHHHHHHHHHCCCE-EEHH
Confidence 962 34678888888889997 4444
No 222
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=80.58 E-value=22 Score=32.59 Aligned_cols=98 Identities=12% Similarity=0.026 Sum_probs=60.2
Q ss_pred HHHHHhcCCCCEEEEecC-CCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCC
Q 025860 78 RVQVLVESAPDLIAFETI-PNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT 156 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~-~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~ 156 (247)
.++...+.|+|.|-+=|- +..+.++..++.+|+.+ ..+.+++... .. .+=+.+.+.++.+.+ .+++.|.+-=+
T Consensus 92 dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G--~~v~~~l~~s--~~-~~~e~l~~~a~~~~~-~Ga~~i~i~DT 165 (333)
T TIGR03217 92 DLKAAYDAGARTVRVATHCTEADVSEQHIGMARELG--MDTVGFLMMS--HM-TPPEKLAEQAKLMES-YGADCVYIVDS 165 (333)
T ss_pred HHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcC--CeEEEEEEcc--cC-CCHHHHHHHHHHHHh-cCCCEEEEccC
Confidence 355566789998866543 34445666677777764 4454444321 11 122334455555555 57887766544
Q ss_pred ----ChhHHHHHHHHHHhhcC--CCEEEEeC
Q 025860 157 ----PPRFISGLILIIKKVTA--KPILIYPN 181 (247)
Q Consensus 157 ----~p~~~~~~l~~l~~~~~--~pl~vyPN 181 (247)
.|+.+..+++.+++..+ .||++...
T Consensus 166 ~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~H 196 (333)
T TIGR03217 166 AGAMLPDDVRDRVRALKAVLKPETQVGFHAH 196 (333)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCceEEEEeC
Confidence 39999999999988754 77776554
No 223
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=80.51 E-value=27 Score=34.06 Aligned_cols=98 Identities=15% Similarity=0.033 Sum_probs=61.1
Q ss_pred HHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCC
Q 025860 77 RRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT 156 (247)
Q Consensus 77 ~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~ 156 (247)
+..+.+.+.|+|++=+|-... .++...+..++.. +..+++|+.-. ..+++-+.+.+.++.+.. .++|.+=+-+.
T Consensus 101 ~ll~~~~~~~~d~iDiEl~~~-~~~~~~~~~~~~~--~~~vI~S~H~f--~~tP~~~el~~~~~~~~~-~gaDi~Kia~~ 174 (529)
T PLN02520 101 DALRLAMELGADYVDVELKVA-HEFINSISGKKPE--KCKVIVSSHNY--ENTPSVEELGNLVARIQA-TGADIVKIATT 174 (529)
T ss_pred HHHHHHHHhCCCEEEEEcCCc-hhHHHHHHhhhhc--CCEEEEEecCC--CCCCCHHHHHHHHHHHHH-hCCCEEEEecC
Confidence 344555567899999996543 3555555555543 57899988611 123333344455665555 57898888886
Q ss_pred --ChhHHHHHHHHHHhhcCCCEEEEeC
Q 025860 157 --PPRFISGLILIIKKVTAKPILIYPN 181 (247)
Q Consensus 157 --~p~~~~~~l~~l~~~~~~pl~vyPN 181 (247)
+++....+++.... .+.|++.+.-
T Consensus 175 ~~~~~D~~~ll~~~~~-~~~p~i~~~M 200 (529)
T PLN02520 175 ALDITDVARMFQITVH-SQVPTIGLVM 200 (529)
T ss_pred CCCHHHHHHHHHHHhh-cCCCEEEEec
Confidence 56777777765443 4778775544
No 224
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=80.50 E-value=19 Score=32.60 Aligned_cols=87 Identities=14% Similarity=0.112 Sum_probs=50.5
Q ss_pred HHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcC
Q 025860 76 RRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINC 155 (247)
Q Consensus 76 ~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC 155 (247)
.++++.+++.||+++.+ +.....+ .++.+++. +.+++..+ .+++++. .+.+ .++|+|.+..
T Consensus 77 ~~~~~~~~~~~v~~v~~-~~g~p~~---~i~~lk~~--g~~v~~~v-----------~s~~~a~-~a~~-~GaD~Ivv~g 137 (307)
T TIGR03151 77 DELVDLVIEEKVPVVTT-GAGNPGK---YIPRLKEN--GVKVIPVV-----------ASVALAK-RMEK-AGADAVIAEG 137 (307)
T ss_pred HHHHHHHHhCCCCEEEE-cCCCcHH---HHHHHHHc--CCEEEEEc-----------CCHHHHH-HHHH-cCCCEEEEEC
Confidence 45777777788888776 4444432 45555654 35555333 2344443 3444 4888887744
Q ss_pred C---C---hhHHHHHHHHHHhhcCCCEEEEeCCC
Q 025860 156 T---P---PRFISGLILIIKKVTAKPILIYPNSG 183 (247)
Q Consensus 156 ~---~---p~~~~~~l~~l~~~~~~pl~vyPNaG 183 (247)
. + ......+++++.+..++|++ .++|
T Consensus 138 ~eagGh~g~~~~~~ll~~v~~~~~iPvi--aaGG 169 (307)
T TIGR03151 138 MESGGHIGELTTMALVPQVVDAVSIPVI--AAGG 169 (307)
T ss_pred cccCCCCCCCcHHHHHHHHHHHhCCCEE--EECC
Confidence 2 1 12246778888877778854 4444
No 225
>PRK06498 isocitrate lyase; Provisional
Probab=80.36 E-value=3.5 Score=39.74 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=30.1
Q ss_pred hcCCCCEEEEec-CCCHHHHHHHHHHHHhhCCCCcEE
Q 025860 83 VESAPDLIAFET-IPNKIEAQAYAELLEEENIKIPAW 118 (247)
Q Consensus 83 ~~~gvD~i~~ET-~~~~~E~~aa~~~~~~~~~~~pv~ 118 (247)
...++|+||+|| -|++.+++...+.+++..+++...
T Consensus 342 ~apyADLlW~ET~~P~~~qa~~fa~~Ir~~~P~~~La 378 (531)
T PRK06498 342 LQNGADLLWIETEKPHVAQIAGMVNRIREVVPNAKLV 378 (531)
T ss_pred hcCcCcEEEecCCCCCHHHHHHHHHHHHHHCCCCeEE
Confidence 358999999998 899999999999999875555443
No 226
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=80.25 E-value=25 Score=30.67 Aligned_cols=105 Identities=13% Similarity=0.048 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEecCC---------CHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHH
Q 025860 67 TVETLKDFHRRRVQVLVESAPDLIAFETIP---------NKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLE 137 (247)
Q Consensus 67 s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~---------~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~ 137 (247)
+...+.. -++.|.++||-.|-+|-.- +.+|+..=++++++.-.+..++|.--. +..+..+..+++
T Consensus 83 ~~~~v~~----tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ART--Da~~~~~~~~de 156 (238)
T PF13714_consen 83 DPENVAR----TVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIART--DAFLRAEEGLDE 156 (238)
T ss_dssp SHHHHHH----HHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEE--CHHCHHHHHHHH
T ss_pred hhHHHHH----HHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEec--cccccCCCCHHH
Confidence 3445444 6777888999999999882 566766666666553212333333322 222224678888
Q ss_pred HHHHHHh--CCCCeEEEEcCC-ChhHHHHHHHHHHhhcCCCEEEEeC
Q 025860 138 CASIAES--CKRVVSVGINCT-PPRFISGLILIIKKVTAKPILIYPN 181 (247)
Q Consensus 138 ~~~~~~~--~~~~~avG~NC~-~p~~~~~~l~~l~~~~~~pl~vyPN 181 (247)
+++.++. ..|+|+|-+-+. ..+.+..+.+.+ +.|+.+.+.
T Consensus 157 aI~R~~aY~eAGAD~ifi~~~~~~~~i~~~~~~~----~~Pl~v~~~ 199 (238)
T PF13714_consen 157 AIERAKAYAEAGADMIFIPGLQSEEEIERIVKAV----DGPLNVNPG 199 (238)
T ss_dssp HHHHHHHHHHTT-SEEEETTSSSHHHHHHHHHHH----SSEEEEETT
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhc----CCCEEEEcC
Confidence 8888753 268999998886 566665555554 599988884
No 227
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=80.10 E-value=28 Score=32.20 Aligned_cols=102 Identities=10% Similarity=0.028 Sum_probs=59.5
Q ss_pred HHHHHHhcCCCCEEEEe-----------cCCCHHHHH----HHHHHHHhhCCCCcEEEEEE--EcCCCcccCCCcHHHHH
Q 025860 77 RRVQVLVESAPDLIAFE-----------TIPNKIEAQ----AYAELLEEENIKIPAWFSFN--SKDGVNVVSGDSLLECA 139 (247)
Q Consensus 77 ~q~~~l~~~gvD~i~~E-----------T~~~~~E~~----aa~~~~~~~~~~~pv~is~~--~~~~~~l~~G~~~~~~~ 139 (247)
+-++..+++|+|.+.+- .-.+.+|+. .+++.+++.+..+-+.++.+ +.+.++. +-+-+.+.+
T Consensus 125 ~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~-~~~~l~~~~ 203 (347)
T PLN02746 125 KGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPV-PPSKVAYVA 203 (347)
T ss_pred HHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCC-CHHHHHHHH
Confidence 34556667899987655 223444444 35666666642233334433 4444442 334455666
Q ss_pred HHHHhCCCCeEEEEcCC----ChhHHHHHHHHHHhhcCC-CEEEEe
Q 025860 140 SIAESCKRVVSVGINCT----PPRFISGLILIIKKVTAK-PILIYP 180 (247)
Q Consensus 140 ~~~~~~~~~~avG~NC~----~p~~~~~~l~~l~~~~~~-pl~vyP 180 (247)
+.+.+ .|++-|.+-=+ .|..+..+++.+++..+. ||.+.-
T Consensus 204 ~~~~~-~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~~~~i~~H~ 248 (347)
T PLN02746 204 KELYD-MGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPVDKLAVHF 248 (347)
T ss_pred HHHHH-cCCCEEEecCCcCCcCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 66665 57887666443 399999999998876543 555443
No 228
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=80.04 E-value=40 Score=30.71 Aligned_cols=131 Identities=14% Similarity=0.096 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCC---HHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHh-CCCC
Q 025860 73 DFHRRRVQVLVESAPDLIAFETIPN---KIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAES-CKRV 148 (247)
Q Consensus 73 ~~~~~q~~~l~~~gvD~i~~ET~~~---~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~-~~~~ 148 (247)
+.-.+.+++..+.|+=+-+ -+++. -.|...-++.+|+..++.|+++++-+... .|.+.+++.+.+.. ...+
T Consensus 69 ~in~~La~~a~~~g~~~~~-Gs~~~~~~~~e~~~~~~~vr~~~~~~p~~~Nl~~~~~----~~~~~~~~~~~i~~~~ada 143 (326)
T cd02811 69 EINRNLAEAAEELGIAMGV-GSQRAALEDPELAESFTVVREAPPNGPLIANLGAVQL----NGYGVEEARRAVEMIEADA 143 (326)
T ss_pred HHHHHHHHHHHHcCCCeEe-cCchhhccChhhhhHHHHHHHhCCCceEEeecCcccc----CCCCHHHHHHHHHhcCCCc
Confidence 3345566666667743222 22221 12334566677777656999998865422 14455554444432 1345
Q ss_pred eEEEEcCC----C---h---hHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeE
Q 025860 149 VSVGINCT----P---P---RFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASL 218 (247)
Q Consensus 149 ~avG~NC~----~---p---~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~i 218 (247)
..|++||. . + +.....|+.+.+..+.|+++.-++.. .++ +.++.+.+.|++.
T Consensus 144 lel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~~vPVivK~~g~g--------------~s~----~~a~~l~~~Gvd~ 205 (326)
T cd02811 144 LAIHLNPLQEAVQPEGDRDFRGWLERIEELVKALSVPVIVKEVGFG--------------ISR----ETAKRLADAGVKA 205 (326)
T ss_pred EEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCC--------------CCH----HHHHHHHHcCCCE
Confidence 66788872 1 1 22346677777777999998754420 122 4556677888766
Q ss_pred --EeecCCCC
Q 025860 219 --VGGCCRTT 226 (247)
Q Consensus 219 --IGGCCGt~ 226 (247)
|+|.+||+
T Consensus 206 I~vsG~GGt~ 215 (326)
T cd02811 206 IDVAGAGGTS 215 (326)
T ss_pred EEECCCCCCc
Confidence 56666653
No 229
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=79.98 E-value=42 Score=29.67 Aligned_cols=89 Identities=16% Similarity=0.118 Sum_probs=55.4
Q ss_pred HHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHH-hCCCCe-EEEEcC
Q 025860 78 RVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAE-SCKRVV-SVGINC 155 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~-~~~~~~-avG~NC 155 (247)
-++.+.++|||.+++=-+| ++|.+..++.+++.+ +..+.-++ .-++ .+-++.+. ...+.. .++.+-
T Consensus 109 f~~~~~~aGvdGviipDLp-~ee~~~~~~~~~~~g--l~~I~lva--------p~t~-~eri~~i~~~s~gfIY~vs~~G 176 (258)
T PRK13111 109 FAADAAEAGVDGLIIPDLP-PEEAEELRAAAKKHG--LDLIFLVA--------PTTT-DERLKKIASHASGFVYYVSRAG 176 (258)
T ss_pred HHHHHHHcCCcEEEECCCC-HHHHHHHHHHHHHcC--CcEEEEeC--------CCCC-HHHHHHHHHhCCCcEEEEeCCC
Confidence 3455677999999998777 589999999998874 44332221 1112 22222222 223333 345555
Q ss_pred -CC-----hhHHHHHHHHHHhhcCCCEEE
Q 025860 156 -TP-----PRFISGLILIIKKVTAKPILI 178 (247)
Q Consensus 156 -~~-----p~~~~~~l~~l~~~~~~pl~v 178 (247)
++ +..+...++.+++..+.|+++
T Consensus 177 vTG~~~~~~~~~~~~i~~vk~~~~~pv~v 205 (258)
T PRK13111 177 VTGARSADAADLAELVARLKAHTDLPVAV 205 (258)
T ss_pred CCCcccCCCccHHHHHHHHHhcCCCcEEE
Confidence 22 466788899999888999876
No 230
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=79.94 E-value=49 Score=30.34 Aligned_cols=112 Identities=13% Similarity=0.062 Sum_probs=63.0
Q ss_pred CCCHHH---HHHHHHHHHHHHhcCCCCEEEEec----------CC-----------CH----HHHHHHHHHHHhhCCCCc
Q 025860 65 AITVET---LKDFHRRRVQVLVESAPDLIAFET----------IP-----------NK----IEAQAYAELLEEENIKIP 116 (247)
Q Consensus 65 ~~s~~e---~~~~~~~q~~~l~~~gvD~i~~ET----------~~-----------~~----~E~~aa~~~~~~~~~~~p 116 (247)
++|.+| +.+.|..-++.+.++|.|.+=+=. -| ++ .=+..+++++++.- +.+
T Consensus 130 ~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~v-g~~ 208 (343)
T cd04734 130 AMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAV-GPD 208 (343)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHc-CCC
Confidence 356555 555677777777889999995554 11 11 22334566666642 344
Q ss_pred EEEEEEEcCCCcccCCCcHHHHHHHH---HhCCC-CeEEEEcCC---C--------------hhHHHHHHHHHHhhcCCC
Q 025860 117 AWFSFNSKDGVNVVSGDSLLECASIA---ESCKR-VVSVGINCT---P--------------PRFISGLILIIKKVTAKP 175 (247)
Q Consensus 117 v~is~~~~~~~~l~~G~~~~~~~~~~---~~~~~-~~avG~NC~---~--------------p~~~~~~l~~l~~~~~~p 175 (247)
+++.+-+........|.++++.+..+ .+ .+ ++.|=+... . +.....+++.+++..+.|
T Consensus 209 ~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~-~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ip 287 (343)
T cd04734 209 FIVGIRISGDEDTEGGLSPDEALEIAARLAA-EGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLP 287 (343)
T ss_pred CeEEEEeehhhccCCCCCHHHHHHHHHHHHh-cCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCC
Confidence 44444444333345677777665444 44 45 787776432 1 112245666777777788
Q ss_pred EEE
Q 025860 176 ILI 178 (247)
Q Consensus 176 l~v 178 (247)
+++
T Consensus 288 vi~ 290 (343)
T cd04734 288 VFH 290 (343)
T ss_pred EEe
Confidence 654
No 231
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=79.89 E-value=36 Score=30.91 Aligned_cols=78 Identities=21% Similarity=0.172 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhcCCCCEEEEec-CC---------CHHHHHHHHHHHHhhC----CCCcEEEEEEEcCCCcccCCCcHHH
Q 025860 72 KDFHRRRVQVLVESAPDLIAFET-IP---------NKIEAQAYAELLEEEN----IKIPAWFSFNSKDGVNVVSGDSLLE 137 (247)
Q Consensus 72 ~~~~~~q~~~l~~~gvD~i~~ET-~~---------~~~E~~aa~~~~~~~~----~~~pv~is~~~~~~~~l~~G~~~~~ 137 (247)
.+.|.+.++.+.+ ++|+|-+.. -| +.+.+..+++++++.- .++|+++-++... +-+.+.+
T Consensus 147 ~~d~~~~~~~~~~-~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~-----~~~~~~~ 220 (327)
T cd04738 147 VEDYVIGVRKLGP-YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDL-----SDEELED 220 (327)
T ss_pred HHHHHHHHHHHHh-hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCC-----CHHHHHH
Confidence 3445556665543 588887764 12 2245666777776642 1389998886321 1124566
Q ss_pred HHHHHHhCCCCeEEE-EcCC
Q 025860 138 CASIAESCKRVVSVG-INCT 156 (247)
Q Consensus 138 ~~~~~~~~~~~~avG-~NC~ 156 (247)
.++.+.+ .++++|= .|.+
T Consensus 221 ia~~l~~-aGad~I~~~n~~ 239 (327)
T cd04738 221 IADVALE-HGVDGIIATNTT 239 (327)
T ss_pred HHHHHHH-cCCcEEEEECCc
Confidence 7776666 5888766 4543
No 232
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=79.85 E-value=11 Score=34.01 Aligned_cols=63 Identities=6% Similarity=0.083 Sum_probs=45.3
Q ss_pred HHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcC
Q 025860 77 RRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINC 155 (247)
Q Consensus 77 ~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC 155 (247)
+|++..+++|+|.|++..|+ +++++.+++.+++ .+.+..+ .|.++..+.+... .|+|.|-+-+
T Consensus 208 eea~~a~~agaDiImLDnms-pe~l~~av~~~~~-----~~~leaS--------GGI~~~ni~~yA~--tGVD~Is~ga 270 (290)
T PRK06559 208 AAAEEAAAAGADIIMLDNMS-LEQIEQAITLIAG-----RSRIECS--------GNIDMTTISRFRG--LAIDYVSSGS 270 (290)
T ss_pred HHHHHHHHcCCCEEEECCCC-HHHHHHHHHHhcC-----ceEEEEE--------CCCCHHHHHHHHh--cCCCEEEeCc
Confidence 35555677999999999976 8999999887653 2333332 5778887777654 5888877766
No 233
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=79.71 E-value=44 Score=29.63 Aligned_cols=154 Identities=14% Similarity=0.004 Sum_probs=82.5
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEec-CC----------CHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCC--
Q 025860 66 ITVETLKDFHRRRVQVLVESAPDLIAFET-IP----------NKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSG-- 132 (247)
Q Consensus 66 ~s~~e~~~~~~~q~~~l~~~gvD~i~~ET-~~----------~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G-- 132 (247)
.+.++... .+..|.+.|+|.| |. .| +..+. ..++.+++...+.++.+-.... +..-..+
T Consensus 18 ~~~~~~~~----ia~~L~~~Gv~~i--E~G~~a~~~~~~~~~~~~~~-e~i~~~~~~~~~~~l~~~~r~~-~~~~~~~~p 89 (275)
T cd07937 18 MRTEDMLP----IAEALDEAGFFSL--EVWGGATFDVCMRFLNEDPW-ERLRELRKAMPNTPLQMLLRGQ-NLVGYRHYP 89 (275)
T ss_pred ccHHHHHH----HHHHHHHcCCCEE--EccCCcchhhhccccCCCHH-HHHHHHHHhCCCCceehhcccc-cccCccCCC
Confidence 35566555 5777888999888 43 23 22232 2333344432234433222111 1000011
Q ss_pred -CcHHHHHHHHHhCCCCeEEEEcCC--ChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHH
Q 025860 133 -DSLLECASIAESCKRVVSVGINCT--PPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVS 209 (247)
Q Consensus 133 -~~~~~~~~~~~~~~~~~avG~NC~--~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~ 209 (247)
.-..+-++...+ .+++.|.+-+. ..+.+.+.++..++. ..-+.++... .. .+ ..+++.+.+.++
T Consensus 90 ~~~~~~di~~~~~-~g~~~iri~~~~~~~~~~~~~i~~ak~~-G~~v~~~i~~--~~-------~~--~~~~~~~~~~~~ 156 (275)
T cd07937 90 DDVVELFVEKAAK-NGIDIFRIFDALNDVRNLEVAIKAVKKA-GKHVEGAICY--TG-------SP--VHTLEYYVKLAK 156 (275)
T ss_pred cHHHHHHHHHHHH-cCCCEEEEeecCChHHHHHHHHHHHHHC-CCeEEEEEEe--cC-------CC--CCCHHHHHHHHH
Confidence 112444555544 46777766543 455666677766554 2223222211 00 01 135788999999
Q ss_pred HHHHcCCeEEeec--CC-CChHHHHHHHHHhhCC
Q 025860 210 KWCEVGASLVGGC--CR-TTPNTIKGIYRTLSNR 240 (247)
Q Consensus 210 ~~~~~G~~iIGGC--CG-t~P~hI~al~~~l~~~ 240 (247)
++.+.|+..|.=| .| .+|+++..+-+.+++.
T Consensus 157 ~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~ 190 (275)
T cd07937 157 ELEDMGADSICIKDMAGLLTPYAAYELVKALKKE 190 (275)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHh
Confidence 9999999987643 23 4899999888777654
No 234
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=79.51 E-value=25 Score=31.23 Aligned_cols=155 Identities=14% Similarity=0.104 Sum_probs=86.5
Q ss_pred HHHHHHHHhcCCCCEEEE----------------------ecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCC
Q 025860 75 HRRRVQVLVESAPDLIAF----------------------ETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSG 132 (247)
Q Consensus 75 ~~~q~~~l~~~gvD~i~~----------------------ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G 132 (247)
..+.++.|.++|||+|=+ +--.+++++-..++-+++...+.|+++.-..+. ...-|
T Consensus 26 ~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~--i~~~G 103 (259)
T PF00290_consen 26 TLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNP--IFQYG 103 (259)
T ss_dssp HHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHH--HHHH-
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccH--Hhccc
Confidence 344778888899999822 222334444444555663335789887665422 22223
Q ss_pred CcHHHHHHHHHhCCCCeEEEEcCCChhHHHHHHHHHHhhcCCC--EEEEeCCCCc----cccccccccc---C------C
Q 025860 133 DSLLECASIAESCKRVVSVGINCTPPRFISGLILIIKKVTAKP--ILIYPNSGEF----YDADRKEWVQ---N------T 197 (247)
Q Consensus 133 ~~~~~~~~~~~~~~~~~avG~NC~~p~~~~~~l~~l~~~~~~p--l~vyPNaG~~----~d~~~~~~~~---~------~ 197 (247)
+++.++.+.+ .+++++-+==-.++....+.+.+.++ +.. .++.||...- .......|.+ . +
T Consensus 104 --~e~F~~~~~~-aGvdGlIipDLP~ee~~~~~~~~~~~-gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~ 179 (259)
T PF00290_consen 104 --IERFFKEAKE-AGVDGLIIPDLPPEESEELREAAKKH-GLDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGVTGSR 179 (259)
T ss_dssp --HHHHHHHHHH-HTEEEEEETTSBGGGHHHHHHHHHHT-T-EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSSSSTT
T ss_pred --hHHHHHHHHH-cCCCEEEEcCCChHHHHHHHHHHHHc-CCeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCCCCCc
Confidence 4667777766 47888777666677777666655543 333 4677876421 0000112211 0 1
Q ss_pred CCChHHHHHHHHHHHHc-CCeEEeecCCCChHHHHHHHH
Q 025860 198 GVSDEDFVSYVSKWCEV-GASLVGGCCRTTPNTIKGIYR 235 (247)
Q Consensus 198 ~~~~~~~~~~~~~~~~~-G~~iIGGCCGt~P~hI~al~~ 235 (247)
..-+..+.+++++.++. ...++-|=.=.+|+|++.+..
T Consensus 180 ~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~~ 218 (259)
T PF00290_consen 180 TELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLAA 218 (259)
T ss_dssp SSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHHc
Confidence 12245667777777665 477777777789999999873
No 235
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=79.35 E-value=27 Score=29.66 Aligned_cols=99 Identities=15% Similarity=0.177 Sum_probs=53.1
Q ss_pred HHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHH-HhCCCCeEEEEcCC
Q 025860 78 RVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIA-ESCKRVVSVGINCT 156 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~-~~~~~~~avG~NC~ 156 (247)
+++.+.+.|+|++-+=..+...-++.+++.+++.++.+-+++.+|..+...+ +.++.+.+..+ ......-.+|+=|+
T Consensus 68 ~~~~~~~~gad~vTvh~~~g~~~l~~~~~~~~~~~~~v~~v~~lss~~~~~~--~~~~~~~v~~~a~~~~~~g~~g~v~~ 145 (213)
T TIGR01740 68 QYESKIKQGADMVNVHGVAGSESVEAAKEAASEGGRGLLAVTELTSMGSLDY--GEDTMEKVLEYAKEAKAFGLDGPVCS 145 (213)
T ss_pred HHHHHHhcCCCEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhhh--CcCHHHHHHHHHHHhhhcCCeEEEeC
Confidence 4444667999999999988888889999988875422233333443332233 44554444333 32111112455465
Q ss_pred ChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 025860 157 PPRFISGLILIIKKVTAKPILIYPNSG 183 (247)
Q Consensus 157 ~p~~~~~~l~~l~~~~~~pl~vyPNaG 183 (247)
|+. ++.+++.....+++-|--+
T Consensus 146 -~~~----~~~ir~~~~~~~~vtPGI~ 167 (213)
T TIGR01740 146 -AEE----AKEIRKFTGDFLILTPGIR 167 (213)
T ss_pred -HHH----HHHHHHhcCCceEEeCCcC
Confidence 433 2333333222456777544
No 236
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=79.34 E-value=44 Score=29.49 Aligned_cols=97 Identities=15% Similarity=0.124 Sum_probs=62.2
Q ss_pred HHHHhcCCCCEEEE-ecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCC-
Q 025860 79 VQVLVESAPDLIAF-ETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT- 156 (247)
Q Consensus 79 ~~~l~~~gvD~i~~-ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~- 156 (247)
++...+.|+|.|-+ -...++++++.+++.+|+.+ ..+.+++... .+ .+=+-+.+.++.+.+ .+++.|.+-=+
T Consensus 88 l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G--~~v~~~~~~a--~~-~~~~~~~~~~~~~~~-~g~~~i~l~DT~ 161 (266)
T cd07944 88 LEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKG--YEVFFNLMAI--SG-YSDEELLELLELVNE-IKPDVFYIVDSF 161 (266)
T ss_pred HHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCC--CeEEEEEEee--cC-CCHHHHHHHHHHHHh-CCCCEEEEecCC
Confidence 44456689998543 35567788888888888764 5555554432 11 122334445555555 47887766543
Q ss_pred ---ChhHHHHHHHHHHhhcC--CCEEEEeC
Q 025860 157 ---PPRFISGLILIIKKVTA--KPILIYPN 181 (247)
Q Consensus 157 ---~p~~~~~~l~~l~~~~~--~pl~vyPN 181 (247)
.|+.+..+++.+++..+ .||.+...
T Consensus 162 G~~~P~~v~~lv~~l~~~~~~~~~i~~H~H 191 (266)
T cd07944 162 GSMYPEDIKRIISLLRSNLDKDIKLGFHAH 191 (266)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCceEEEEeC
Confidence 39999999999988765 77766553
No 237
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=79.29 E-value=37 Score=28.55 Aligned_cols=147 Identities=12% Similarity=0.109 Sum_probs=79.4
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhC
Q 025860 66 ITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESC 145 (247)
Q Consensus 66 ~s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~ 145 (247)
.+.+++.+. ++...+.|+|.+.+- ..-++.+.+.++.. .+.+-.+..|.... ...-.-+.++-+.+ .
T Consensus 14 ~t~~~i~~~----~~~a~~~~~~av~v~----p~~v~~~~~~l~~~--~~~v~~~~~fp~g~-~~~~~k~~eve~A~-~- 80 (203)
T cd00959 14 ATEEDIRKL----CDEAKEYGFAAVCVN----PCFVPLAREALKGS--GVKVCTVIGFPLGA-TTTEVKVAEAREAI-A- 80 (203)
T ss_pred CCHHHHHHH----HHHHHHcCCCEEEEc----HHHHHHHHHHcCCC--CcEEEEEEecCCCC-CcHHHHHHHHHHHH-H-
Confidence 466777774 344445789999854 33344444444432 22233233332221 11222223333333 3
Q ss_pred CCCeEEEEcC--CC-----hhHHHHHHHHHHhhc-CCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCe
Q 025860 146 KRVVSVGINC--TP-----PRFISGLILIIKKVT-AKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGAS 217 (247)
Q Consensus 146 ~~~~avG~NC--~~-----p~~~~~~l~~l~~~~-~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 217 (247)
.|++.|-+.. .. -+.+..-+..+.+.. +.|+.+.-..+. .+++.....++-..+.|+.
T Consensus 81 ~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~--------------l~~~~i~~a~ria~e~GaD 146 (203)
T cd00959 81 DGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGL--------------LTDEEIIKACEIAIEAGAD 146 (203)
T ss_pred cCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCC--------------CCHHHHHHHHHHHHHhCCC
Confidence 4677665544 31 233445555554443 466544221111 2366777888888899999
Q ss_pred EEeec-----CCCChHHHHHHHHHhhC
Q 025860 218 LVGGC-----CRTTPNTIKGIYRTLSN 239 (247)
Q Consensus 218 iIGGC-----CGt~P~hI~al~~~l~~ 239 (247)
+|==. -|+||++++.|++.++.
T Consensus 147 ~IKTsTG~~~~~at~~~v~~~~~~~~~ 173 (203)
T cd00959 147 FIKTSTGFGPGGATVEDVKLMKEAVGG 173 (203)
T ss_pred EEEcCCCCCCCCCCHHHHHHHHHHhCC
Confidence 98654 34788999999988873
No 238
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=78.97 E-value=4.4 Score=35.80 Aligned_cols=45 Identities=22% Similarity=0.192 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEE
Q 025860 67 TVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAW 118 (247)
Q Consensus 67 s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~ 118 (247)
+.+++ +.-.++++.+.++|+|.|++|-+++ ++++.+.+. . ++|++
T Consensus 153 t~~~a-~~~i~ra~a~~~AGA~~i~lE~v~~-~~~~~i~~~---v--~iP~i 197 (254)
T cd06557 153 TEEEA-ERLLEDALALEEAGAFALVLECVPA-ELAKEITEA---L--SIPTI 197 (254)
T ss_pred CHHHH-HHHHHHHHHHHHCCCCEEEEcCCCH-HHHHHHHHh---C--CCCEE
Confidence 33334 4455589999999999999999985 555554443 3 36765
No 239
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=78.80 E-value=44 Score=29.14 Aligned_cols=91 Identities=11% Similarity=-0.026 Sum_probs=59.2
Q ss_pred CCCCEEEEecCC--CHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCC--ChhH
Q 025860 85 SAPDLIAFETIP--NKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT--PPRF 160 (247)
Q Consensus 85 ~gvD~i~~ET~~--~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~--~p~~ 160 (247)
.++|++=+|-.. ....++.++..+++. +..+++|..-. ..+++=+.+.+.+..+.. .++|.+=+-|. +++.
T Consensus 96 ~~~d~vDiE~~~~~~~~~~~~l~~~~~~~--~~~vI~S~H~F--~~TP~~~~l~~~~~~m~~-~gaDi~KiAv~~~~~~D 170 (238)
T PRK13575 96 NGIDMIDIEWQADIDIEKHQRLITHLQQY--NKEVVISHHNF--ESTPPLDELKFIFFKMQK-FNPEYVKLAVMPHNKND 170 (238)
T ss_pred CCCCEEEEEcccCCChHHHHHHHHHHHHc--CCEEEEecCCC--CCCCCHHHHHHHHHHHHH-hCCCEEEEEecCCCHHH
Confidence 458999999653 455566666666654 57999998622 223333345566666665 57888888885 6788
Q ss_pred HHHHHHHHHhh---cCCCEEEEe
Q 025860 161 ISGLILIIKKV---TAKPILIYP 180 (247)
Q Consensus 161 ~~~~l~~l~~~---~~~pl~vyP 180 (247)
+..+++..... .+.|+++.+
T Consensus 171 vl~Ll~~~~~~~~~~~~p~i~i~ 193 (238)
T PRK13575 171 VLNLLQAMSTFSDTMDCKVVGIS 193 (238)
T ss_pred HHHHHHHHHHHHhccCCCEEEEe
Confidence 88888765443 456865444
No 240
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=78.74 E-value=47 Score=29.45 Aligned_cols=90 Identities=19% Similarity=0.206 Sum_probs=57.7
Q ss_pred HHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCe-EEEEcCC
Q 025860 78 RVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVV-SVGINCT 156 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-avG~NC~ 156 (247)
.++.+.++|||.+++=-+| .+|....++.+++.+ +..+.-++ ..++.+..-.......+.. .|..+-+
T Consensus 111 F~~~~~~aGvdgviipDLP-~ee~~~~~~~~~~~g--i~~I~lv~--------PtT~~eri~~i~~~a~gFIY~vS~~Gv 179 (263)
T CHL00200 111 FIKKISQAGVKGLIIPDLP-YEESDYLISVCNLYN--IELILLIA--------PTSSKSRIQKIARAAPGCIYLVSTTGV 179 (263)
T ss_pred HHHHHHHcCCeEEEecCCC-HHHHHHHHHHHHHcC--CCEEEEEC--------CCCCHHHHHHHHHhCCCcEEEEcCCCC
Confidence 4555678999999998888 588888888888875 54444443 2333333333333322232 3343432
Q ss_pred -C-----hhHHHHHHHHHHhhcCCCEEE
Q 025860 157 -P-----PRFISGLILIIKKVTAKPILI 178 (247)
Q Consensus 157 -~-----p~~~~~~l~~l~~~~~~pl~v 178 (247)
+ ++.+..+++++++.++.|+.+
T Consensus 180 TG~~~~~~~~~~~~i~~ir~~t~~Pi~v 207 (263)
T CHL00200 180 TGLKTELDKKLKKLIETIKKMTNKPIIL 207 (263)
T ss_pred CCCCccccHHHHHHHHHHHHhcCCCEEE
Confidence 2 467888899999888999866
No 241
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=78.57 E-value=16 Score=34.39 Aligned_cols=74 Identities=11% Similarity=0.155 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCCCCEEEEecC---------------CCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHH
Q 025860 74 FHRRRVQVLVESAPDLIAFETI---------------PNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLEC 138 (247)
Q Consensus 74 ~~~~q~~~l~~~gvD~i~~ET~---------------~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~ 138 (247)
.|.+.++.+.+.|+|.|=+--- .+.+-++.+++++++.. ++|+|+-++- +-+++.+.
T Consensus 128 ~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~-~iPv~vKLsP-------n~t~i~~i 199 (385)
T PLN02495 128 AWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKA-TVPVWAKMTP-------NITDITQP 199 (385)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhh-cCceEEEeCC-------ChhhHHHH
Confidence 3455666677789999866431 24455667778888764 6999999972 23347888
Q ss_pred HHHHHhCCCCeE-EEEcCC
Q 025860 139 ASIAESCKRVVS-VGINCT 156 (247)
Q Consensus 139 ~~~~~~~~~~~a-vG~NC~ 156 (247)
++.+.+ .++++ +.+|-.
T Consensus 200 a~aa~~-~Gadgi~liNT~ 217 (385)
T PLN02495 200 ARVALK-SGCEGVAAINTI 217 (385)
T ss_pred HHHHHH-hCCCEEEEeccc
Confidence 887776 57886 566875
No 242
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=78.55 E-value=16 Score=33.84 Aligned_cols=75 Identities=23% Similarity=0.199 Sum_probs=46.8
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCC-----------C----cccCCCcHHHHH
Q 025860 75 HRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDG-----------V----NVVSGDSLLECA 139 (247)
Q Consensus 75 ~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~-----------~----~l~~G~~~~~~~ 139 (247)
..+.++.|.+.|||.|++= + -.++.++++.++++|+.+|....-. + .+..=.++.++.
T Consensus 81 ~~~~l~~l~e~GvDaviv~---D----pg~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~rEls~~ei~ 153 (347)
T COG0826 81 LERYLDRLVELGVDAVIVA---D----PGLIMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKRVVLPRELSLEEIK 153 (347)
T ss_pred HHHHHHHHHHcCCCEEEEc---C----HHHHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEEEEeCccCCHHHHH
Confidence 4457777888999999853 3 3556677777778999999986421 1 122334555655
Q ss_pred HHHHhCC----CCeEEEEcCC
Q 025860 140 SIAESCK----RVVSVGINCT 156 (247)
Q Consensus 140 ~~~~~~~----~~~avG~NC~ 156 (247)
+...+.. .+.+-|--|.
T Consensus 154 ~i~~~~~~veiEvfVhGalci 174 (347)
T COG0826 154 EIKEQTPDVEIEVFVHGALCI 174 (347)
T ss_pred HHHHhCCCceEEEEEecchhh
Confidence 5544421 2556677775
No 243
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=78.50 E-value=13 Score=33.72 Aligned_cols=64 Identities=9% Similarity=0.115 Sum_probs=45.1
Q ss_pred HHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcC
Q 025860 76 RRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINC 155 (247)
Q Consensus 76 ~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC 155 (247)
.+|++..+++|+|.|++..|+ +++++.+++.++. .+.+..+ .|.++..+.+... .|+|.|-+-.
T Consensus 215 leea~eA~~aGaDiImLDnms-pe~l~~av~~~~~-----~~~lEaS--------GGIt~~ni~~yA~--tGVD~IS~ga 278 (294)
T PRK06978 215 LAQLETALAHGAQSVLLDNFT-LDMMREAVRVTAG-----RAVLEVS--------GGVNFDTVRAFAE--TGVDRISIGA 278 (294)
T ss_pred HHHHHHHHHcCCCEEEECCCC-HHHHHHHHHhhcC-----CeEEEEE--------CCCCHHHHHHHHh--cCCCEEEeCc
Confidence 345666678999999999986 8999998886642 2333332 4678887777554 5788776655
No 244
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=78.42 E-value=27 Score=33.66 Aligned_cols=84 Identities=15% Similarity=0.138 Sum_probs=48.2
Q ss_pred CCCCEEEEecCCCHHHHH------HHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHH---HHHHHhC--CCCeEEEE
Q 025860 85 SAPDLIAFETIPNKIEAQ------AYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLEC---ASIAESC--KRVVSVGI 153 (247)
Q Consensus 85 ~gvD~i~~ET~~~~~E~~------aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~---~~~~~~~--~~~~avG~ 153 (247)
.+.|++++|+...+.+.- ...+.++.. +.|+++-+.+.. |..+..+ +..+... ..+.+|-+
T Consensus 121 ~~~D~vIIEGaGGl~~~~~~~~d~s~~~lA~~l--~apVILV~d~~~------g~~~a~i~gt~~~l~~~~~~~i~GvIl 192 (475)
T TIGR00313 121 REYDYVVIEGAGSPAEINLLKRDLANMRIAELA--NADAILVADIDR------GGVFASIYGTLKLLPENWRKLIKGIVI 192 (475)
T ss_pred hcCCEEEEECCCCccccccCcCCchHHHHHHHh--CCCEEEEEeCCc------cHHHHHHHHHHHHhChhhcCceEEEEE
Confidence 468999999998776621 234556655 579887765432 2222222 2222221 24568889
Q ss_pred cCCCh--hHHHHHHHHHHhhcCCCE
Q 025860 154 NCTPP--RFISGLILIIKKVTAKPI 176 (247)
Q Consensus 154 NC~~p--~~~~~~l~~l~~~~~~pl 176 (247)
|+..+ ..+...++.+.+..+.|+
T Consensus 193 Nrv~~~~~~~~~~~~~l~e~~gipv 217 (475)
T TIGR00313 193 NKFRGNVDVLKSGIEKLEELTGIPV 217 (475)
T ss_pred eccCCcHHHHHHHHHHHHHhhCCCE
Confidence 99743 334455555555555663
No 245
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=77.89 E-value=7.9 Score=33.84 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEE
Q 025860 73 DFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSF 121 (247)
Q Consensus 73 ~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~ 121 (247)
+.--+|+++..++|+|.+++|.+.+.+|++.+.+.+ +.|+.+..
T Consensus 155 deaI~R~~aY~eAGAD~ifi~~~~~~~~i~~~~~~~-----~~Pl~v~~ 198 (238)
T PF13714_consen 155 DEAIERAKAYAEAGADMIFIPGLQSEEEIERIVKAV-----DGPLNVNP 198 (238)
T ss_dssp HHHHHHHHHHHHTT-SEEEETTSSSHHHHHHHHHHH-----SSEEEEET
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhc-----CCCEEEEc
Confidence 334458999999999999999999999977766655 26866554
No 246
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=77.81 E-value=35 Score=29.63 Aligned_cols=102 Identities=19% Similarity=0.170 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCCCCEEEEe-----------cCCCHH-----------HHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCC
Q 025860 75 HRRRVQVLVESAPDLIAFE-----------TIPNKI-----------EAQAYAELLEEENIKIPAWFSFNSKDGVNVVSG 132 (247)
Q Consensus 75 ~~~q~~~l~~~gvD~i~~E-----------T~~~~~-----------E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G 132 (247)
..+.++.|.++|||+|=+. ++++.. ..-.+++.+|+.. ++|+.+....+ .....|
T Consensus 16 ~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~-~~pv~lm~y~n--~~~~~G 92 (242)
T cd04724 16 TLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN-TIPIVLMGYYN--PILQYG 92 (242)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC-CCCEEEEEecC--HHHHhC
Confidence 3447778888999999776 111111 2233444455443 67865433332 111122
Q ss_pred CcHHHHHHHHHhCCCCeEEEEcCCChhHHHHHHHHHHhhcCCC-EEEEeCC
Q 025860 133 DSLLECASIAESCKRVVSVGINCTPPRFISGLILIIKKVTAKP-ILIYPNS 182 (247)
Q Consensus 133 ~~~~~~~~~~~~~~~~~avG~NC~~p~~~~~~l~~l~~~~~~p-l~vyPNa 182 (247)
++..++.+.+ .|++++-+.=-+++....+++.++++.=.+ +++-|+.
T Consensus 93 --~~~fi~~~~~-aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T 140 (242)
T cd04724 93 --LERFLRDAKE-AGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTT 140 (242)
T ss_pred --HHHHHHHHHH-CCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 3555665555 466666664445666666666665542222 2355554
No 247
>PLN02591 tryptophan synthase
Probab=77.57 E-value=50 Score=29.09 Aligned_cols=91 Identities=18% Similarity=0.193 Sum_probs=56.9
Q ss_pred HHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCe-EEEEcC
Q 025860 77 RRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVV-SVGINC 155 (247)
Q Consensus 77 ~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-avG~NC 155 (247)
.-++.+.++|||.+++=-+| ++|.....+.+++.+ +..+.-++ .-++-+.+-.......+.. .|+.+-
T Consensus 97 ~F~~~~~~aGv~GviipDLP-~ee~~~~~~~~~~~g--l~~I~lv~--------Ptt~~~ri~~ia~~~~gFIY~Vs~~G 165 (250)
T PLN02591 97 KFMATIKEAGVHGLVVPDLP-LEETEALRAEAAKNG--IELVLLTT--------PTTPTERMKAIAEASEGFVYLVSSTG 165 (250)
T ss_pred HHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHHHcC--CeEEEEeC--------CCCCHHHHHHHHHhCCCcEEEeeCCC
Confidence 34555678999999998888 689999999888874 44443222 1122222222222223333 345443
Q ss_pred C-C-----hhHHHHHHHHHHhhcCCCEEE
Q 025860 156 T-P-----PRFISGLILIIKKVTAKPILI 178 (247)
Q Consensus 156 ~-~-----p~~~~~~l~~l~~~~~~pl~v 178 (247)
+ + |..+...++.+++.++.|+++
T Consensus 166 vTG~~~~~~~~~~~~i~~vk~~~~~Pv~v 194 (250)
T PLN02591 166 VTGARASVSGRVESLLQELKEVTDKPVAV 194 (250)
T ss_pred CcCCCcCCchhHHHHHHHHHhcCCCceEE
Confidence 2 2 677888899999988999876
No 248
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=77.35 E-value=4.9 Score=35.75 Aligned_cols=45 Identities=20% Similarity=0.201 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEE
Q 025860 67 TVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAW 118 (247)
Q Consensus 67 s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~ 118 (247)
+.+++ +.-.++++.+.++|+|.|++|.+++ ++++.+.+. . +.|++
T Consensus 156 t~~~a-~~~i~ra~a~~eAGA~~i~lE~v~~-~~~~~i~~~---l--~iP~i 200 (264)
T PRK00311 156 DEEAA-EKLLEDAKALEEAGAFALVLECVPA-ELAKEITEA---L--SIPTI 200 (264)
T ss_pred CHHHH-HHHHHHHHHHHHCCCCEEEEcCCCH-HHHHHHHHh---C--CCCEE
Confidence 43444 4455589999999999999999986 565554443 2 36765
No 249
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=77.33 E-value=67 Score=30.49 Aligned_cols=155 Identities=10% Similarity=0.005 Sum_probs=79.3
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEE-----EE-ecCCCHH-HHHHHHHHHHhhC--CCCcEEEEEEEcCCCcccCCCcHH
Q 025860 66 ITVETLKDFHRRRVQVLVESAPDLI-----AF-ETIPNKI-EAQAYAELLEEEN--IKIPAWFSFNSKDGVNVVSGDSLL 136 (247)
Q Consensus 66 ~s~~e~~~~~~~q~~~l~~~gvD~i-----~~-ET~~~~~-E~~aa~~~~~~~~--~~~pv~is~~~~~~~~l~~G~~~~ 136 (247)
++++++.+ ++..+...|+|+| +. ..+.-++ -+++..+++++.. .+.+.+-++.+..+ -..+.
T Consensus 157 lsp~~~a~----~~~~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~ya~NiT~~-----~~em~ 227 (412)
T TIGR03326 157 LSTEEHAK----VAYELWSGGVDLLKDDENLTSQPFNRFEERVEKLYKVRDKVEAETGERKEYLANITAP-----VREME 227 (412)
T ss_pred CChHHHHH----HHHHHHhcCCceeecCCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCcceEEEEecCC-----HHHHH
Confidence 47777666 5556667999998 22 2333333 3455555554421 13444445544221 12233
Q ss_pred HHHHHHHhCCCCeEEEEcCC--ChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHc
Q 025860 137 ECASIAESCKRVVSVGINCT--PPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEV 214 (247)
Q Consensus 137 ~~~~~~~~~~~~~avG~NC~--~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (247)
+-++.+.+ .++.++.+|.. +... ...|.......+.||...|+.--.+... +...++..- +.+-|+-+
T Consensus 228 ~ra~~~~~-~G~~~~mv~~~~~G~~~-l~~l~~~~~~~~l~ih~Hra~~ga~~~~-----~~~Gis~~v---l~kl~RLa 297 (412)
T TIGR03326 228 RRAELVAD-LGGQYVMVDVVVCGWSA-LQYIRELTEDLGLAIHAHRAMHAAFTRN-----PKHGISMFA---LAKLYRLI 297 (412)
T ss_pred HHHHHHHH-hCCCeEEEEeeccchHH-HHHHHHhhccCCeEEEEcCCcccccccC-----CCCcCcHHH---HHHHHHHc
Confidence 33444444 47788888874 4332 2333332224578999999864322111 111234322 33345556
Q ss_pred CCeE--Eeec----CCCChHHHHHHHHHhhC
Q 025860 215 GASL--VGGC----CRTTPNTIKGIYRTLSN 239 (247)
Q Consensus 215 G~~i--IGGC----CGt~P~hI~al~~~l~~ 239 (247)
|+.. +|+= =..+++....+++.+..
T Consensus 298 GaD~~~~~t~~~Gk~~~~~~~~~~~~~~~~~ 328 (412)
T TIGR03326 298 GVDQLHTGTAGVGKLEGGKEDTKQINDFLRQ 328 (412)
T ss_pred CCCeeeeCCCccCCCCCCHHHHHHHHHHHhC
Confidence 7654 3333 34567777777777653
No 250
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=77.23 E-value=18 Score=35.01 Aligned_cols=93 Identities=13% Similarity=0.059 Sum_probs=55.9
Q ss_pred cCCCCEEEEecCCCHHHH-------HHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHH---HHHHHHh-CCCCeEEE
Q 025860 84 ESAPDLIAFETIPNKIEA-------QAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLE---CASIAES-CKRVVSVG 152 (247)
Q Consensus 84 ~~gvD~i~~ET~~~~~E~-------~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~---~~~~~~~-~~~~~avG 152 (247)
..+.|++++|-...+-+- -...+.++.. +.||++-..+..... ...+.. ..+.+.+ ...+.+|-
T Consensus 315 ~~~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l--~~PVILV~~~~~g~i---~~~~~~i~G~~~~l~~~~i~i~GVI 389 (476)
T PRK06278 315 NSDYDYYIIEGVMGAFTGALNKKNPYSGAEIAKAL--GFPVYIVSSCSKSGI---EGAFVESMAYYSLLKKMGVKVEGII 389 (476)
T ss_pred hcCCCEEEEECCCCcccccCCCCccccHHHHHHHh--CCCEEEEEcCCCChH---HHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 347899999987666664 1345777777 589998876543210 011221 1223322 23467899
Q ss_pred EcCCChhHHHHHHHHHHhhcCCCEEEEeC
Q 025860 153 INCTPPRFISGLILIIKKVTAKPILIYPN 181 (247)
Q Consensus 153 ~NC~~p~~~~~~l~~l~~~~~~pl~vyPN 181 (247)
+|+..+......++.+.+..++|++-+|-
T Consensus 390 lN~v~~~~~~~~~~~~le~~gvpVLG~~~ 418 (476)
T PRK06278 390 LNKVYNMEIFEKVKKIAENSNINLIGVGK 418 (476)
T ss_pred EECCCcHHHHHHHHHHHHhcCCCEEEecc
Confidence 99986544455556555557899765565
No 251
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=76.91 E-value=33 Score=31.59 Aligned_cols=158 Identities=13% Similarity=0.034 Sum_probs=82.6
Q ss_pred CCHHHHHHHHHH-------------HHHHHhcCCCCEEEEecC-------------CCHHHHHHHHHHHHhhCCCCcEEE
Q 025860 66 ITVETLKDFHRR-------------RVQVLVESAPDLIAFETI-------------PNKIEAQAYAELLEEENIKIPAWF 119 (247)
Q Consensus 66 ~s~~e~~~~~~~-------------q~~~l~~~gvD~i~~ET~-------------~~~~E~~aa~~~~~~~~~~~pv~i 119 (247)
++..++++.|+. -++++-++|||+|+.-.- -+++|+..-.+++++-. +.|+++
T Consensus 22 ~ti~~l~~~k~~g~kivmlTAyD~~sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga-~~a~vV 100 (332)
T PLN02424 22 VTLRTLRQKYRRGEPITMVTAYDYPSAVHVDSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGA-NRPLLV 100 (332)
T ss_pred cCHHHHHHHHhCCCcEEEEecCCHHHHHHHHHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccC-CCCEEE
Confidence 355666666653 356677799999986421 24677777777776643 456554
Q ss_pred -EEEEcCCCcccCCCcHHHHHHHH----HhCCCCeEEEEcCCChhHHHHHHHHHHhhcCCCEE----EEeCCCCcccccc
Q 025860 120 -SFNSKDGVNVVSGDSLLECASIA----ESCKRVVSVGINCTPPRFISGLILIIKKVTAKPIL----IYPNSGEFYDADR 190 (247)
Q Consensus 120 -s~~~~~~~~l~~G~~~~~~~~~~----~~~~~~~avG~NC~~p~~~~~~l~~l~~~~~~pl~----vyPNaG~~~d~~~ 190 (247)
-+-| ..-+.+++++++.. .+ .++++|=+-.+. ..+.+.++.+. ...+|++ +.|-.-...
T Consensus 101 aDmPf-----gSY~~s~e~av~nA~rl~~e-aGa~aVKlEGg~-~~~~~~I~~l~-~~GIPV~gHiGLtPQs~~~l---- 168 (332)
T PLN02424 101 GDLPF-----GSYESSTDQAVESAVRMLKE-GGMDAVKLEGGS-PSRVTAAKAIV-EAGIAVMGHVGLTPQAISVL---- 168 (332)
T ss_pred eCCCC-----CCCCCCHHHHHHHHHHHHHH-hCCcEEEECCCc-HHHHHHHHHHH-HcCCCEEEeecccceeehhh----
Confidence 3322 12345677664433 33 355555444432 44567777776 3578866 555331110
Q ss_pred cccccCCC--CChHHHHHHHHHHHHcCCeEEeecCCCChHHHHHHHHHh
Q 025860 191 KEWVQNTG--VSDEDFVSYVSKWCEVGASLVGGCCRTTPNTIKGIYRTL 237 (247)
Q Consensus 191 ~~~~~~~~--~~~~~~~~~~~~~~~~G~~iIGGCCGt~P~hI~al~~~l 237 (247)
..|..... .......+.++.+.++|+..|===|=. .+-+++|.+.+
T Consensus 169 GGykvqGr~~~~a~~li~dA~ale~AGAf~ivLE~Vp-~~la~~It~~l 216 (332)
T PLN02424 169 GGFRPQGRTAESAVKVVETALALQEAGCFAVVLECVP-APVAAAITSAL 216 (332)
T ss_pred cCccccCCCHHHHHHHHHHHHHHHHcCCcEEEEcCCc-HHHHHHHHHhC
Confidence 11111111 112345566677777887555432322 22445555544
No 252
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=76.79 E-value=44 Score=28.99 Aligned_cols=99 Identities=11% Similarity=0.104 Sum_probs=56.6
Q ss_pred HHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCC---C----cc-----cCCCcHHHHHHHHHhC
Q 025860 78 RVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDG---V----NV-----VSGDSLLECASIAESC 145 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~---~----~l-----~~G~~~~~~~~~~~~~ 145 (247)
.++.+.+.|+|.+.+=|.. +.....+-+..+.++ +-.+.+|+.+.++ + .+ ....+..+.++.+.+
T Consensus 88 ~~~~~l~~Ga~~Viigt~~-l~~p~~~~ei~~~~g-~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~- 164 (253)
T PRK02083 88 DARRLLRAGADKVSINSAA-VANPELISEAADRFG-SQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEE- 164 (253)
T ss_pred HHHHHHHcCCCEEEEChhH-hhCcHHHHHHHHHcC-CCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHH-
Confidence 4444555789999886532 222233334444443 3467788877542 1 11 234566777777776
Q ss_pred CCCeEEEEcC----C---ChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 025860 146 KRVVSVGINC----T---PPRFISGLILIIKKVTAKPILIYPNSG 183 (247)
Q Consensus 146 ~~~~avG~NC----~---~p~~~~~~l~~l~~~~~~pl~vyPNaG 183 (247)
.+++.+.++= + ++. ..+++.+.+..+.|+ +.++|
T Consensus 165 ~g~~~ii~~~i~~~g~~~g~d--~~~i~~~~~~~~ipv--ia~GG 205 (253)
T PRK02083 165 LGAGEILLTSMDRDGTKNGYD--LELTRAVSDAVNVPV--IASGG 205 (253)
T ss_pred cCCCEEEEcCCcCCCCCCCcC--HHHHHHHHhhCCCCE--EEECC
Confidence 5787766622 2 232 567777777777884 45554
No 253
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=76.71 E-value=20 Score=32.67 Aligned_cols=15 Identities=13% Similarity=0.262 Sum_probs=12.4
Q ss_pred HhcCCCCEEEEecCC
Q 025860 82 LVESAPDLIAFETIP 96 (247)
Q Consensus 82 l~~~gvD~i~~ET~~ 96 (247)
+.++|.-++..-|++
T Consensus 32 ~~~~G~Gavv~ktit 46 (325)
T cd04739 32 LEDAGAGAIVLPSLF 46 (325)
T ss_pred HHHCCCcEEEecccc
Confidence 556899999999986
No 254
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=76.36 E-value=59 Score=29.33 Aligned_cols=141 Identities=11% Similarity=-0.074 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCEEEEec-----CCCH---HHHHH----HHHHHHhhCCCCcEEEEEEEcCC--CcccCCCc
Q 025860 69 ETLKDFHRRRVQVLVESAPDLIAFET-----IPNK---IEAQA----YAELLEEENIKIPAWFSFNSKDG--VNVVSGDS 134 (247)
Q Consensus 69 ~e~~~~~~~q~~~l~~~gvD~i~~ET-----~~~~---~E~~a----a~~~~~~~~~~~pv~is~~~~~~--~~l~~G~~ 134 (247)
+.+.+.+++.++.|.++|++.|-+.- +.+. .++.. +.+.+.+.+.+.++.+.+++.+. ....+| +
T Consensus 151 ~~la~~~~~e~~~l~~aG~~~iQiDEP~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~lHiC~G~~~~~~~~~~-~ 229 (332)
T cd03311 151 MDLALALREEIRDLYDAGCRYIQIDEPALAEGLPLEPDDLAADYLKWANEALADRPDDTQIHTHICYGNFRSTWAAEG-G 229 (332)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeecchhhccCCcccHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCCCcccccccC-c
Confidence 66888999999999999999875542 2211 12222 33333332224556655543321 123334 4
Q ss_pred HHHHHHHHHhCCCCeEEEEcCCCh-hHHHHHHHHHHhhcCCC--EEEEeCCCCcccccccccccCCCCChHHHHHHHHHH
Q 025860 135 LLECASIAESCKRVVSVGINCTPP-RFISGLILIIKKVTAKP--ILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKW 211 (247)
Q Consensus 135 ~~~~~~~~~~~~~~~avG~NC~~p-~~~~~~l~~l~~~~~~p--l~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 211 (247)
...++..+.+ ..++++++-...+ ..-...|+.+.. ++. +++.+. . ..|. .++++..+.+++.
T Consensus 230 y~~i~~~l~~-~~vd~~~le~~~~~~~~~~~l~~~~~--~k~l~~GvVd~-------~-~~~~----e~~e~v~~ri~~~ 294 (332)
T cd03311 230 YEPIAEYIFE-LDVDVFFLEYDNSRAGGLEPLKELPY--DKKVGLGVVDV-------K-SPEV----ESPEEVKDRIEEA 294 (332)
T ss_pred HHHHHHHHHh-CCCCEEEEEEcCCCCcchHHHHhCCC--CCEEEeeeecC-------C-CCCC----CCHHHHHHHHHHH
Confidence 5667777766 4699999998742 222233333211 222 222221 1 1233 3588888888888
Q ss_pred HHcCCe---EEeecCCC
Q 025860 212 CEVGAS---LVGGCCRT 225 (247)
Q Consensus 212 ~~~G~~---iIGGCCGt 225 (247)
.+.... +|+=-||.
T Consensus 295 ~~~~~~~~l~lsp~CGl 311 (332)
T cd03311 295 AKYVPLEQLWVSPDCGF 311 (332)
T ss_pred HhhCCHHHEEECCCCCC
Confidence 775432 78888995
No 255
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=76.19 E-value=29 Score=29.99 Aligned_cols=72 Identities=11% Similarity=0.013 Sum_probs=44.6
Q ss_pred HHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcc------cCCCcHHHHHHHHHhCCCCeEEE
Q 025860 79 VQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNV------VSGDSLLECASIAESCKRVVSVG 152 (247)
Q Consensus 79 ~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l------~~G~~~~~~~~~~~~~~~~~avG 152 (247)
++.|.+.|+|-+++-|..- +...+-+++++++ + +++|+.++++.-. ..+.++.++++.+.+ . +..+-
T Consensus 88 v~~l~~~G~~~vivGtaa~--~~~~l~~~~~~~g-~--ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~-~-~~~ii 160 (228)
T PRK04128 88 IKDAYEIGVENVIIGTKAF--DLEFLEKVTSEFE-G--ITVSLDVKGGRIAVKGWLEESSIKVEDAYEMLKN-Y-VNRFI 160 (228)
T ss_pred HHHHHHCCCCEEEECchhc--CHHHHHHHHHHcC-C--EEEEEEccCCeEecCCCeEcCCCCHHHHHHHHHH-H-hCEEE
Confidence 3445557999988855443 3344444556664 3 9999998764221 245677788887765 2 55666
Q ss_pred EcCCC
Q 025860 153 INCTP 157 (247)
Q Consensus 153 ~NC~~ 157 (247)
++..+
T Consensus 161 ~t~i~ 165 (228)
T PRK04128 161 YTSIE 165 (228)
T ss_pred EEecc
Confidence 66653
No 256
>PRK08227 autoinducer 2 aldolase; Validated
Probab=76.19 E-value=57 Score=29.05 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=67.5
Q ss_pred HhcCCCCEEEEecCC-CHHHHHHHHH------HHHhhCCCCcEEEEEEEcCCCcccCCC-cHHHHHHHHHhCCCCeEEEE
Q 025860 82 LVESAPDLIAFETIP-NKIEAQAYAE------LLEEENIKIPAWFSFNSKDGVNVVSGD-SLLECASIAESCKRVVSVGI 153 (247)
Q Consensus 82 l~~~gvD~i~~ET~~-~~~E~~aa~~------~~~~~~~~~pv~is~~~~~~~~l~~G~-~~~~~~~~~~~~~~~~avG~ 153 (247)
.++.|+|.+.+=.++ +-.|.+.+.+ -+.+. ++|+++ +. .......++. -+.-+++...+ .|+|.|=+
T Consensus 103 AvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~--G~Plla-~~-prG~~~~~~~~~ia~aaRiaaE-LGADiVK~ 177 (264)
T PRK08227 103 AVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRY--GMPVMA-VT-AVGKDMVRDARYFSLATRIAAE-MGAQIIKT 177 (264)
T ss_pred HHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHh--CCcEEE-Ee-cCCCCcCchHHHHHHHHHHHHH-HcCCEEec
Confidence 445899999876554 4445444333 33334 689888 44 2222222322 23445554455 79999999
Q ss_pred cCCChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEEeecCC
Q 025860 154 NCTPPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCR 224 (247)
Q Consensus 154 NC~~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iIGGCCG 224 (247)
|.++ +.+.+++ .....|+++- +|. + .+.++|.+.+.+.++.|+ .|=|-|
T Consensus 178 ~y~~-~~f~~vv----~a~~vPVvia--GG~------k-------~~~~~~L~~v~~ai~aGa--~Gv~~G 226 (264)
T PRK08227 178 YYVE-EGFERIT----AGCPVPIVIA--GGK------K-------LPERDALEMCYQAIDEGA--SGVDMG 226 (264)
T ss_pred CCCH-HHHHHHH----HcCCCcEEEe--CCC------C-------CCHHHHHHHHHHHHHcCC--ceeeec
Confidence 9985 4444443 3456777542 121 1 135678899998988887 455555
No 257
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=76.17 E-value=32 Score=30.15 Aligned_cols=96 Identities=17% Similarity=0.146 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHH-----------------HHhh-CCCCcEEEEEEEcCCCcccCCC
Q 025860 72 KDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAEL-----------------LEEE-NIKIPAWFSFNSKDGVNVVSGD 133 (247)
Q Consensus 72 ~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~-----------------~~~~-~~~~pv~is~~~~~~~~l~~G~ 133 (247)
.++|++..+...+.|+|++ -|..+...+..+.+. ++.. ..++|+++|. .+.
T Consensus 55 ~e~~~~L~~~~~~~gi~f~--stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlST---------G~s 123 (241)
T PF03102_consen 55 EEQHKELFEYCKELGIDFF--STPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILST---------GMS 123 (241)
T ss_dssp HHHHHHHHHHHHHTT-EEE--EEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE----------TT-
T ss_pred HHHHHHHHHHHHHcCCEEE--ECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEEC---------CCC
Confidence 3567777777777888777 488888777766431 2221 2368999987 233
Q ss_pred c---HHHHHHHHHhCCCCeEEEEcCCC-----hhH-HHHHHHHHHhhcCCCEEE
Q 025860 134 S---LLECASIAESCKRVVSVGINCTP-----PRF-ISGLILIIKKVTAKPILI 178 (247)
Q Consensus 134 ~---~~~~~~~~~~~~~~~avG~NC~~-----p~~-~~~~l~~l~~~~~~pl~v 178 (247)
+ ++++++.+....+...+.+=|++ |+. =+..++.+++..+.|++.
T Consensus 124 tl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~~~vG~ 177 (241)
T PF03102_consen 124 TLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFGVPVGY 177 (241)
T ss_dssp -HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHSTSEEEE
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhcCCCEEe
Confidence 3 44577777444577889999963 333 256777788777777753
No 258
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=76.12 E-value=54 Score=28.77 Aligned_cols=77 Identities=21% Similarity=0.220 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCC----ChhHHHHHHHHHHhhcC
Q 025860 98 KIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT----PPRFISGLILIIKKVTA 173 (247)
Q Consensus 98 ~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~----~p~~~~~~l~~l~~~~~ 173 (247)
++.++.+++.+++.+ .. ++|++.+.++. +=+-+.+.++.+.+ .+++.|.+-=+ .|+.+..+++.+++..+
T Consensus 113 ~~~~~~~i~~a~~~G--~~--v~~~~~~~~~~-~~~~~~~~~~~~~~-~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~ 186 (268)
T cd07940 113 LERAVEAVEYAKSHG--LD--VEFSAEDATRT-DLDFLIEVVEAAIE-AGATTINIPDTVGYLTPEEFGELIKKLKENVP 186 (268)
T ss_pred HHHHHHHHHHHHHcC--Ce--EEEeeecCCCC-CHHHHHHHHHHHHH-cCCCEEEECCCCCCCCHHHHHHHHHHHHHhCC
Confidence 345556666667654 33 45666655442 23334555666665 57888777554 39999999999988754
Q ss_pred ---CCEEEEe
Q 025860 174 ---KPILIYP 180 (247)
Q Consensus 174 ---~pl~vyP 180 (247)
.||.+..
T Consensus 187 ~~~i~l~~H~ 196 (268)
T cd07940 187 NIKVPISVHC 196 (268)
T ss_pred CCceeEEEEe
Confidence 5665544
No 259
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=75.83 E-value=39 Score=30.95 Aligned_cols=78 Identities=15% Similarity=0.171 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhcCCCCEEEEec-CC---------CHHHHHHHHHHHHhhC------CCCcEEEEEEEcCCCcccCCCcH
Q 025860 72 KDFHRRRVQVLVESAPDLIAFET-IP---------NKIEAQAYAELLEEEN------IKIPAWFSFNSKDGVNVVSGDSL 135 (247)
Q Consensus 72 ~~~~~~q~~~l~~~gvD~i~~ET-~~---------~~~E~~aa~~~~~~~~------~~~pv~is~~~~~~~~l~~G~~~ 135 (247)
.+.|.+.++.+.+ .+|+|-+.- -| +.+.+..+++.+++.- .++|+|+-++-.- +-+.+
T Consensus 153 ~~dy~~~~~~~~~-~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~-----~~~~i 226 (335)
T TIGR01036 153 KEDYAACLRKLGP-LADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDL-----TESDL 226 (335)
T ss_pred HHHHHHHHHHHhh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCC-----CHHHH
Confidence 3446667777664 589987752 22 2344555666665532 1289998886321 11247
Q ss_pred HHHHHHHHhCCCCeE-EEEcCC
Q 025860 136 LECASIAESCKRVVS-VGINCT 156 (247)
Q Consensus 136 ~~~~~~~~~~~~~~a-vG~NC~ 156 (247)
.+.++.+.+ .++++ +.+|..
T Consensus 227 ~~ia~~~~~-~GadGi~l~NT~ 247 (335)
T TIGR01036 227 EDIADSLVE-LGIDGVIATNTT 247 (335)
T ss_pred HHHHHHHHH-hCCcEEEEECCC
Confidence 777777766 57885 667876
No 260
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=75.64 E-value=53 Score=28.43 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=21.7
Q ss_pred CChHHHHHHHHHHHHcCCeEE----eecCCCChHHHHHHHHHh
Q 025860 199 VSDEDFVSYVSKWCEVGASLV----GGCCRTTPNTIKGIYRTL 237 (247)
Q Consensus 199 ~~~~~~~~~~~~~~~~G~~iI----GGCCGt~P~hI~al~~~l 237 (247)
.||.+..+ .+++|+++| .+. + +|.||++|+.-+
T Consensus 120 ~TpsEi~~----A~~~Ga~~vKlFPA~~-~-G~~~ikal~~p~ 156 (222)
T PRK07114 120 GSLSEIGY----AEELGCEIVKLFPGSV-Y-GPGFVKAIKGPM 156 (222)
T ss_pred CCHHHHHH----HHHCCCCEEEECcccc-c-CHHHHHHHhccC
Confidence 56776555 457787665 453 2 499999887554
No 261
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=75.63 E-value=54 Score=28.58 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=33.9
Q ss_pred CChHHHHHHHHHHHHcCCeEEeec--CC-CChHHHHHHHHHhhCCCC
Q 025860 199 VSDEDFVSYVSKWCEVGASLVGGC--CR-TTPNTIKGIYRTLSNRSS 242 (247)
Q Consensus 199 ~~~~~~~~~~~~~~~~G~~iIGGC--CG-t~P~hI~al~~~l~~~~~ 242 (247)
.+++.+.+.++++.+.|+..|.=| .| .+|+.++.+-+.+++.-|
T Consensus 136 ~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~ 182 (259)
T cd07939 136 ADPDFLIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRAATD 182 (259)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcC
Confidence 358889999999999999987644 23 489999988877765433
No 262
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=75.33 E-value=52 Score=28.20 Aligned_cols=148 Identities=14% Similarity=0.083 Sum_probs=83.3
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhC
Q 025860 66 ITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESC 145 (247)
Q Consensus 66 ~s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~ 145 (247)
.+.+++.+.-++-. +.++..+.+ ++.-++.+.+.++.. +..+..-+.|+- |....-.-+.++-+.++
T Consensus 15 ~t~~~i~~lc~~A~----~~~~~avcv----~p~~v~~a~~~l~~~--~v~v~tVigFP~-G~~~~~~K~~E~~~Av~-- 81 (211)
T TIGR00126 15 TTEEDIITLCAQAK----TYKFAAVCV----NPSYVPLAKELLKGT--EVRICTVVGFPL-GASTTDVKLYETKEAIK-- 81 (211)
T ss_pred CCHHHHHHHHHHHH----hhCCcEEEe----CHHHHHHHHHHcCCC--CCeEEEEeCCCC-CCCcHHHHHHHHHHHHH--
Confidence 57788888655443 457777765 344566666666543 334333333332 22222333444544443
Q ss_pred CCCeEEE--EcCC-----ChhHHHHHHHHHHhhc-CCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCe
Q 025860 146 KRVVSVG--INCT-----PPRFISGLILIIKKVT-AKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGAS 217 (247)
Q Consensus 146 ~~~~avG--~NC~-----~p~~~~~~l~~l~~~~-~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 217 (247)
.|++.|- +|-. ..+.+..-+..+.+.. +.|+-+--..+. ++.++....++-..+.|+.
T Consensus 82 ~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~--------------L~~~ei~~a~~ia~eaGAD 147 (211)
T TIGR00126 82 YGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGL--------------LTDEEIRKACEICIDAGAD 147 (211)
T ss_pred cCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCC--------------CCHHHHHHHHHHHHHhCCC
Confidence 3566544 4443 1344444555555443 466544222211 3356677777778899999
Q ss_pred EEeec-----CCCChHHHHHHHHHhhCC
Q 025860 218 LVGGC-----CRTTPNTIKGIYRTLSNR 240 (247)
Q Consensus 218 iIGGC-----CGt~P~hI~al~~~l~~~ 240 (247)
+|==. -|+||++++.|++.+...
T Consensus 148 fvKTsTGf~~~gat~~dv~~m~~~v~~~ 175 (211)
T TIGR00126 148 FVKTSTGFGAGGATVEDVRLMRNTVGDT 175 (211)
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHHhccC
Confidence 98544 458899999999988753
No 263
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=75.11 E-value=77 Score=30.05 Aligned_cols=101 Identities=15% Similarity=0.122 Sum_probs=58.1
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEE-----EEe-cCCCHH-HHHHHHHHHHhhC--CCCcEEEEEEEcCCCcccCCCcHH
Q 025860 66 ITVETLKDFHRRRVQVLVESAPDLI-----AFE-TIPNKI-EAQAYAELLEEEN--IKIPAWFSFNSKDGVNVVSGDSLL 136 (247)
Q Consensus 66 ~s~~e~~~~~~~q~~~l~~~gvD~i-----~~E-T~~~~~-E~~aa~~~~~~~~--~~~pv~is~~~~~~~~l~~G~~~~ 136 (247)
++++++.+ ++..+...|+|+| +.. ++.-++ -++++.+++++.. .+...+-++.+. |. ..
T Consensus 156 lsp~~~a~----~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT-------~~-~~ 223 (406)
T cd08207 156 LTPEETAA----LVRQLAAAGIDFIKDDELLANPPYSPLDERVRAVMRVINDHAQRTGRKVMYAFNIT-------DD-ID 223 (406)
T ss_pred CCHHHHHH----HHHHHHhCCCCcccccccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEecC-------CC-HH
Confidence 47777666 5555667999997 333 233333 3445556555421 134555455442 32 44
Q ss_pred HHHH---HHHhCCCCeEEEEcCC--ChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 025860 137 ECAS---IAESCKRVVSVGINCT--PPRFISGLILIIKKVTAKPILIYPNSG 183 (247)
Q Consensus 137 ~~~~---~~~~~~~~~avG~NC~--~p~~~~~~l~~l~~~~~~pl~vyPNaG 183 (247)
+..+ .+.+ .++.++-+|-. +.. .++.+++..+.||.+.|+.-
T Consensus 224 em~~ra~~~~~-~G~~~~mv~~~~~G~~----~l~~l~~~~~l~IhaHra~~ 270 (406)
T cd08207 224 EMRRNHDLVVE-AGGTCVMVSLNSVGLS----GLAALRRHSQLPIHGHRNGW 270 (406)
T ss_pred HHHHHHHHHHH-hCCCeEEEeccccchH----HHHHHHhcCCceEEECCCcc
Confidence 4443 3444 57778888874 433 45555556789999999864
No 264
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=75.06 E-value=15 Score=32.52 Aligned_cols=58 Identities=21% Similarity=0.224 Sum_probs=39.9
Q ss_pred HhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEE
Q 025860 82 LVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGI 153 (247)
Q Consensus 82 l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~ 153 (247)
..+.|+|.|.+..++ ..+++.+++.+++. .++|+.++ -|-++..+.+.+. .|+++|.+
T Consensus 197 A~~~gaD~I~ld~~~-~e~l~~~v~~i~~~-~~i~i~as----------GGIt~~ni~~~a~--~Gad~Isv 254 (269)
T cd01568 197 ALEAGADIIMLDNMS-PEELKEAVKLLKGL-PRVLLEAS----------GGITLENIRAYAE--TGVDVIST 254 (269)
T ss_pred HHHcCCCEEEECCCC-HHHHHHHHHHhccC-CCeEEEEE----------CCCCHHHHHHHHH--cCCCEEEE
Confidence 345789999999975 68888877776653 24554432 4677887777554 47888765
No 265
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=74.56 E-value=19 Score=32.20 Aligned_cols=62 Identities=13% Similarity=0.144 Sum_probs=42.5
Q ss_pred HHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcC
Q 025860 78 RVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINC 155 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC 155 (247)
|+....+.|+|+|.+..+ ++++++.+++..+ + +.|+.+| -|.+++.+.+.+ . .|++.|.+-+
T Consensus 201 ea~eA~~~gaD~I~LD~~-~~e~l~~~v~~~~--~-~i~leAs----------GGIt~~ni~~~a-~-tGvD~Isvg~ 262 (277)
T PRK05742 201 ELRQALAAGADIVMLDEL-SLDDMREAVRLTA--G-RAKLEAS----------GGINESTLRVIA-E-TGVDYISIGA 262 (277)
T ss_pred HHHHHHHcCCCEEEECCC-CHHHHHHHHHHhC--C-CCcEEEE----------CCCCHHHHHHHH-H-cCCCEEEECh
Confidence 444556789999999775 5888888887653 2 4665544 367777776654 3 4788887766
No 266
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=74.50 E-value=70 Score=29.71 Aligned_cols=80 Identities=11% Similarity=0.217 Sum_probs=53.1
Q ss_pred HHHHHhCCCCeEEEEcCCC---------h-----------------hHHHHHHHHHHhhc--CCCEEEEeCCCCcccccc
Q 025860 139 ASIAESCKRVVSVGINCTP---------P-----------------RFISGLILIIKKVT--AKPILIYPNSGEFYDADR 190 (247)
Q Consensus 139 ~~~~~~~~~~~avG~NC~~---------p-----------------~~~~~~l~~l~~~~--~~pl~vyPNaG~~~d~~~ 190 (247)
++.+.+ .|.|+|-|||.+ | ..++++++.+++.. +.||++.-|....
T Consensus 150 A~~a~~-aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~----- 223 (361)
T cd04747 150 AADARR-LGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQ----- 223 (361)
T ss_pred HHHHHH-cCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccc-----
Confidence 333344 599999999876 2 23456667777764 5789998885321
Q ss_pred cccccCCCCChHHHHHHHHHHHHcCCeEEeecCC
Q 025860 191 KEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCR 224 (247)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~G~~iIGGCCG 224 (247)
..|......+++++.+.++...+.|+.+|=..+|
T Consensus 224 ~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g 257 (361)
T cd04747 224 QDYTARLADTPDELEALLAPLVDAGVDIFHCSTR 257 (361)
T ss_pred cccccCCCCCHHHHHHHHHHHHHcCCCEEEecCC
Confidence 1121111246788888888888889999977666
No 267
>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the N-terminal barrel, and a few single-barrel sequences most similar to the N-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains fro
Probab=74.47 E-value=33 Score=31.73 Aligned_cols=80 Identities=11% Similarity=0.062 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEe-----cCCCHHHHHHHHHHHHhhCC---CCcEEEEEEEcCCCcccCCCcHHHHH
Q 025860 68 VETLKDFHRRRVQVLVESAPDLIAFE-----TIPNKIEAQAYAELLEEENI---KIPAWFSFNSKDGVNVVSGDSLLECA 139 (247)
Q Consensus 68 ~~e~~~~~~~q~~~l~~~gvD~i~~E-----T~~~~~E~~aa~~~~~~~~~---~~pv~is~~~~~~~~l~~G~~~~~~~ 139 (247)
.+++...|++.++.|.++||+.|=|- +..+..+...+.++.+.... +.++.++..+.+ +.+++
T Consensus 177 ~~dla~~y~~el~~L~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~l~tyfg~---------~~~~~ 247 (360)
T cd03312 177 LDKLLPVYKELLKKLAAAGAEWVQIDEPALVLDLPEEWLAAFKRAYEELAKAAPGLKLLLATYFGS---------LGENL 247 (360)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEeeCChhhcCCCHHHHHHHHHHHHHHhcCCCCCcEEEEecccc---------hHHHH
Confidence 36788899999999999999988443 33333455556666655421 356777754432 24455
Q ss_pred HHHHhCCCCeEEEEcCCC
Q 025860 140 SIAESCKRVVSVGINCTP 157 (247)
Q Consensus 140 ~~~~~~~~~~avG~NC~~ 157 (247)
..+.+ ..++++++-...
T Consensus 248 ~~l~~-l~Vd~l~le~~~ 264 (360)
T cd03312 248 DLLAS-LPVDGLHLDLVR 264 (360)
T ss_pred HHHHc-CCCCEEEEEecC
Confidence 55555 467777777763
No 268
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=74.10 E-value=23 Score=32.33 Aligned_cols=72 Identities=26% Similarity=0.353 Sum_probs=47.4
Q ss_pred HHHHHHhCCCCeEEEEcCCC---------h-----------------hHHHHHHHHHHhhc--CCCEEEEeCCCCccccc
Q 025860 138 CASIAESCKRVVSVGINCTP---------P-----------------RFISGLILIIKKVT--AKPILIYPNSGEFYDAD 189 (247)
Q Consensus 138 ~~~~~~~~~~~~avG~NC~~---------p-----------------~~~~~~l~~l~~~~--~~pl~vyPNaG~~~d~~ 189 (247)
+++.+.+ .|.|+|-|||.+ | ..+.+.++.+++.. +.||++.-|.-...+
T Consensus 154 aA~ra~~-aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~-- 230 (338)
T cd04733 154 AARLAQE-AGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQR-- 230 (338)
T ss_pred HHHHHHH-cCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCC--
Confidence 3443444 589999999874 3 23456667777765 468999888632111
Q ss_pred ccccccCCCCChHHHHHHHHHHHHcCCeEE
Q 025860 190 RKEWVQNTGVSDEDFVSYVSKWCEVGASLV 219 (247)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~iI 219 (247)
.. .++++..+.++.+.+.|+.+|
T Consensus 231 -~g------~~~eea~~ia~~Le~~Gvd~i 253 (338)
T cd04733 231 -GG------FTEEDALEVVEALEEAGVDLV 253 (338)
T ss_pred -CC------CCHHHHHHHHHHHHHcCCCEE
Confidence 11 346778888888888897766
No 269
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=73.82 E-value=57 Score=27.99 Aligned_cols=102 Identities=13% Similarity=0.127 Sum_probs=56.3
Q ss_pred HHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCC-----------cccCCCcHHHHHHHHHhCC
Q 025860 78 RVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGV-----------NVVSGDSLLECASIAESCK 146 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~-----------~l~~G~~~~~~~~~~~~~~ 146 (247)
.++.+.+.|+|.+++=|.. +.....+.++.++.+ +-.+.+|++++... ...+..+..+.++.+.+ .
T Consensus 85 d~~~~l~~G~~~v~ig~~~-~~~p~~~~~i~~~~~-~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~-~ 161 (243)
T cd04731 85 DARRLLRAGADKVSINSAA-VENPELIREIAKRFG-SQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEE-L 161 (243)
T ss_pred HHHHHHHcCCceEEECchh-hhChHHHHHHHHHcC-CCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHH-C
Confidence 4444555789988876532 222333444445443 22477888876321 11124455566676766 5
Q ss_pred CCeEEEEcCCC-----hhHHHHHHHHHHhhcCCCEEEEeCCCC
Q 025860 147 RVVSVGINCTP-----PRFISGLILIIKKVTAKPILIYPNSGE 184 (247)
Q Consensus 147 ~~~avG~NC~~-----p~~~~~~l~~l~~~~~~pl~vyPNaG~ 184 (247)
+++.|-+-... ...-.++++.+.+..+.| ++.|+|.
T Consensus 162 G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~p--via~GGi 202 (243)
T cd04731 162 GAGEILLTSMDRDGTKKGYDLELIRAVSSAVNIP--VIASGGA 202 (243)
T ss_pred CCCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCC--EEEeCCC
Confidence 78877774432 112246677777666777 5555553
No 270
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=73.79 E-value=62 Score=28.34 Aligned_cols=99 Identities=13% Similarity=0.152 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCEE-----EEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCc--HHHHH
Q 025860 67 TVETLKDFHRRRVQVLVESAPDLI-----AFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDS--LLECA 139 (247)
Q Consensus 67 s~~e~~~~~~~q~~~l~~~gvD~i-----~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~--~~~~~ 139 (247)
+.+++.. +++.+...|+|++ .|+.+++...+...+..+++...++|+++++-...+|=...+.. -.+.+
T Consensus 26 ~~~e~~~----~~~~~~~~~aD~vElRlD~l~~~~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll 101 (253)
T PRK02412 26 TLEEVLA----EALAISKYDADIIEWRADFLEKISDVESVLAAAPAIREKFAGKPLLFTFRTAKEGGEIALSDEEYLALI 101 (253)
T ss_pred CHHHHHH----HHHHHhhcCCCEEEEEechhhccCCHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCHHHHHHHH
Confidence 5566655 4444555678877 44566666666666666665433689999888665432222321 11233
Q ss_pred HHHHhCCC-CeEEEEcCC-ChhHHHHHHHHHHh
Q 025860 140 SIAESCKR-VVSVGINCT-PPRFISGLILIIKK 170 (247)
Q Consensus 140 ~~~~~~~~-~~avG~NC~-~p~~~~~~l~~l~~ 170 (247)
+.+.. .+ ++.|=+.=. ..+.+..+++..++
T Consensus 102 ~~~~~-~~~~d~vDiEl~~~~~~~~~l~~~~~~ 133 (253)
T PRK02412 102 KAVIK-SGLPDYIDVELFSGKDVVKEMVAFAHE 133 (253)
T ss_pred HHHHh-cCCCCEEEEeccCChHHHHHHHHHHHH
Confidence 33333 34 677777643 34455555555543
No 271
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=73.75 E-value=47 Score=29.46 Aligned_cols=99 Identities=16% Similarity=0.148 Sum_probs=66.9
Q ss_pred ccCCCcHHHHHHHHHhCCCCeEEEEcCCChhHHHHHHHHHHhhcCCC--EEEEeCCCCccccccccccc-----------
Q 025860 129 VVSGDSLLECASIAESCKRVVSVGINCTPPRFISGLILIIKKVTAKP--ILIYPNSGEFYDADRKEWVQ----------- 195 (247)
Q Consensus 129 l~~G~~~~~~~~~~~~~~~~~avG~NC~~p~~~~~~l~~l~~~~~~p--l~vyPNaG~~~d~~~~~~~~----------- 195 (247)
+.||..+.++.....+ |+...+.+..+++++++..+.| ++.|-|--..|.. ..|..
T Consensus 56 ~aDGpvIq~a~~rAL~---------~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~--e~F~~~~~~aGvdgvi 124 (263)
T CHL00200 56 LADGPIIQEASNRALK---------QGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHYGI--NKFIKKISQAGVKGLI 124 (263)
T ss_pred CccCHHHHHHHHHHHH---------cCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhCH--HHHHHHHHHcCCeEEE
Confidence 3589888888765543 3345788888888888666778 5778885221110 01110
Q ss_pred CCCCChHHHHHHHHHHHHcCCeEEeecCCCCh-HHHHHHHHHhh
Q 025860 196 NTGVSDEDFVSYVSKWCEVGASLVGGCCRTTP-NTIKGIYRTLS 238 (247)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~G~~iIGGCCGt~P-~hI~al~~~l~ 238 (247)
-.++.+++..++...+.+.|...|=-+.-||| +.|+.|++..+
T Consensus 125 ipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~ 168 (263)
T CHL00200 125 IPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAP 168 (263)
T ss_pred ecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCC
Confidence 11355677778888888999999988888875 78888887654
No 272
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=73.47 E-value=22 Score=30.61 Aligned_cols=129 Identities=15% Similarity=0.072 Sum_probs=65.1
Q ss_pred HHHHHhcCCCCEEEEecCCCH------------HHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCc---HHHHHHHH
Q 025860 78 RVQVLVESAPDLIAFETIPNK------------IEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDS---LLECASIA 142 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~------------~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~---~~~~~~~~ 142 (247)
.++..++.|+|-+-+ +.+. +|++.+.+.+++. .+|+++-....+ ....+... +..+++.+
T Consensus 81 ~ve~A~~~GAd~vd~--vi~~~~~~~~~~~~~~~~i~~v~~~~~~~--gl~vIlE~~l~~-~~~~~~~~~~~I~~a~ria 155 (236)
T PF01791_consen 81 EVEEAIRLGADEVDV--VINYGALGSGNEDEVIEEIAAVVEECHKY--GLKVILEPYLRG-EEVADEKKPDLIARAARIA 155 (236)
T ss_dssp HHHHHHHTT-SEEEE--EEEHHHHHTTHHHHHHHHHHHHHHHHHTS--EEEEEEEECECH-HHBSSTTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCceeee--eccccccccccHHHHHHHHHHHHHHHhcC--CcEEEEEEecCc-hhhcccccHHHHHHHHHHH
Confidence 455556678776622 2222 4444555555543 588887733322 22112222 55666666
Q ss_pred HhCCCCeEEEEcCC----ChhHHHHHHHHHHhhcCCC--EEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCC
Q 025860 143 ESCKRVVSVGINCT----PPRFISGLILIIKKVTAKP--ILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGA 216 (247)
Q Consensus 143 ~~~~~~~avG~NC~----~p~~~~~~l~~l~~~~~~p--l~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 216 (247)
.+ .|+|.|=.+-+ .-..-..++.++......| +.+..-+|.. . . +.....+.+.++++.|+
T Consensus 156 ~e-~GaD~vKt~tg~~~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~--~--~--------~~~~~l~~a~~~i~aGa 222 (236)
T PF01791_consen 156 AE-LGADFVKTSTGKPVGATPEDVELMRKAVEAAPVPGKVGVKASGGID--A--E--------DFLRTLEDALEFIEAGA 222 (236)
T ss_dssp HH-TT-SEEEEE-SSSSCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSS--H--H--------HHHHSHHHHHHHHHTTH
T ss_pred HH-hCCCEEEecCCccccccHHHHHHHHHHHHhcCCCcceEEEEeCCCC--h--H--------HHHHHHHHHHHHHHcCC
Confidence 66 68998877665 1111123333333334555 4444444430 0 0 01233466677889999
Q ss_pred eEEeecCC
Q 025860 217 SLVGGCCR 224 (247)
Q Consensus 217 ~iIGGCCG 224 (247)
..+|=++|
T Consensus 223 ~~~G~~~G 230 (236)
T PF01791_consen 223 DRIGTSSG 230 (236)
T ss_dssp SEEEEEEH
T ss_pred hhHHHHHH
Confidence 99997765
No 273
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=73.42 E-value=31 Score=30.22 Aligned_cols=139 Identities=14% Similarity=0.117 Sum_probs=81.0
Q ss_pred CCCCEEEE--ecCCCHHH--HHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCCC---
Q 025860 85 SAPDLIAF--ETIPNKIE--AQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTP--- 157 (247)
Q Consensus 85 ~gvD~i~~--ET~~~~~E--~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~~--- 157 (247)
.-+|++=| =|..-..+ ++.-++++++. ++++...=|+.+-. +.. ..+.+.++.+++ .|.++|=|+=+.
T Consensus 23 ~yID~lKfg~Gt~~l~~~~~l~eki~la~~~--~V~v~~GGtl~E~~-~~q-~~~~~Yl~~~k~-lGf~~IEiS~G~~~i 97 (237)
T TIGR03849 23 DYITFVKFGWGTSALIDRDIVKEKIEMYKDY--GIKVYPGGTLFEIA-HSK-GKFDEYLNECDE-LGFEAVEISDGSMEI 97 (237)
T ss_pred hheeeEEecCceEeeccHHHHHHHHHHHHHc--CCeEeCCccHHHHH-HHh-hhHHHHHHHHHH-cCCCEEEEcCCccCC
Confidence 34777744 34444444 78888888876 46665221111111 111 244555556666 688888888752
Q ss_pred -hhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEE---e-------ecCC--
Q 025860 158 -PRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLV---G-------GCCR-- 224 (247)
Q Consensus 158 -p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iI---G-------GCCG-- 224 (247)
.+.-..+++.++ +.-+-|.|--|..... .....+++++.+.+++++++||..| + |.|.
T Consensus 98 ~~~~~~rlI~~~~---~~g~~v~~EvG~K~~~------~~~~~~~~~~i~~~~~~LeAGA~~ViiEarEsg~~~Gi~~~~ 168 (237)
T TIGR03849 98 SLEERCNLIERAK---DNGFMVLSEVGKKSPE------KDSELTPDDRIKLINKDLEAGADYVIIEGRESGKNIGLFDEK 168 (237)
T ss_pred CHHHHHHHHHHHH---hCCCeEeccccccCCc------ccccCCHHHHHHHHHHHHHCCCcEEEEeehhcCCCcceeCCC
Confidence 344456666554 3456677777753221 1113678999999999999998775 2 6665
Q ss_pred --CChHHHHHHHHHh
Q 025860 225 --TTPNTIKGIYRTL 237 (247)
Q Consensus 225 --t~P~hI~al~~~l 237 (247)
...+-+..|.+.+
T Consensus 169 g~~r~d~v~~i~~~l 183 (237)
T TIGR03849 169 GNVKEDELDVLAENV 183 (237)
T ss_pred CCCchHHHHHHHhhC
Confidence 3445555554443
No 274
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=73.03 E-value=74 Score=28.91 Aligned_cols=110 Identities=16% Similarity=0.186 Sum_probs=66.1
Q ss_pred CCHHH---HHHHHHHHHHHHhcCCCCEEEEecC------------CC-------------HHHHHHHHHHHHhh-CCCCc
Q 025860 66 ITVET---LKDFHRRRVQVLVESAPDLIAFETI------------PN-------------KIEAQAYAELLEEE-NIKIP 116 (247)
Q Consensus 66 ~s~~e---~~~~~~~q~~~l~~~gvD~i~~ET~------------~~-------------~~E~~aa~~~~~~~-~~~~p 116 (247)
.+.+| +.+.|...++.+.++|.|.+=+-.- ++ .+.+..+++.+++. +.+.|
T Consensus 144 mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~ 223 (336)
T cd02932 144 LTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKP 223 (336)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCce
Confidence 56555 5667888888888899999966421 11 22345666667664 44577
Q ss_pred EEEEEEEcCCCcccCCCcHHHHHHHH---HhCCCCeEEEEc---CC-------ChhHHHHHHHHHHhhcCCCEEE
Q 025860 117 AWFSFNSKDGVNVVSGDSLLECASIA---ESCKRVVSVGIN---CT-------PPRFISGLILIIKKVTAKPILI 178 (247)
Q Consensus 117 v~is~~~~~~~~l~~G~~~~~~~~~~---~~~~~~~avG~N---C~-------~p~~~~~~l~~l~~~~~~pl~v 178 (247)
+.+-++..+ ....|.+++++++.+ .+ .+++.|-+- .+ .+......++.+++..+.||++
T Consensus 224 v~vri~~~~--~~~~g~~~~e~~~ia~~Le~-~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~ 295 (336)
T cd02932 224 LFVRISATD--WVEGGWDLEDSVELAKALKE-LGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIA 295 (336)
T ss_pred EEEEEcccc--cCCCCCCHHHHHHHHHHHHH-cCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEE
Confidence 877776432 223566677666544 34 467766542 11 1222346677788878888754
No 275
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=72.77 E-value=71 Score=28.59 Aligned_cols=42 Identities=12% Similarity=0.200 Sum_probs=33.9
Q ss_pred CChHHHHHHHHHHHHcCCeEEeecCC---CChHHHHHHHHHhhCC
Q 025860 199 VSDEDFVSYVSKWCEVGASLVGGCCR---TTPNTIKGIYRTLSNR 240 (247)
Q Consensus 199 ~~~~~~~~~~~~~~~~G~~iIGGCCG---t~P~hI~al~~~l~~~ 240 (247)
.+++.+.+.++.+.+.|+..|.=|=- .+|..+..+-+.++..
T Consensus 152 ~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~ 196 (287)
T PRK05692 152 VPPEAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAE 196 (287)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHh
Confidence 45888999999999999999874432 3899999988887654
No 276
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=72.74 E-value=73 Score=29.20 Aligned_cols=109 Identities=12% Similarity=0.103 Sum_probs=66.3
Q ss_pred CCHHH---HHHHHHHHHHHHhcCCCCEEEEecC----------C-----------CH-HHHHH---HHHHHHhhCCCCcE
Q 025860 66 ITVET---LKDFHRRRVQVLVESAPDLIAFETI----------P-----------NK-IEAQA---YAELLEEENIKIPA 117 (247)
Q Consensus 66 ~s~~e---~~~~~~~q~~~l~~~gvD~i~~ET~----------~-----------~~-~E~~a---a~~~~~~~~~~~pv 117 (247)
+|.+| +.+.|..-++.+.++|.|.+=+=.- | ++ ..++. +++.+|+.- +.|+
T Consensus 132 mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~-~~~v 210 (337)
T PRK13523 132 MTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVW-DGPL 210 (337)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhc-CCCe
Confidence 55544 5567888888888899999955433 1 11 23444 444555543 5677
Q ss_pred EEEEEEcCCCcccCCCcHHHHHHH---HHhCCCCeEEEEcCCC---------hhHHHHHHHHHHhhcCCCEEE
Q 025860 118 WFSFNSKDGVNVVSGDSLLECASI---AESCKRVVSVGINCTP---------PRFISGLILIIKKVTAKPILI 178 (247)
Q Consensus 118 ~is~~~~~~~~l~~G~~~~~~~~~---~~~~~~~~avG~NC~~---------p~~~~~~l~~l~~~~~~pl~v 178 (247)
.+-++..+ ....|.++++.++. +.+ .++|.|-+-... +.....+.+.+++..+.|+++
T Consensus 211 ~vRis~~d--~~~~G~~~~e~~~i~~~l~~-~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~ 280 (337)
T PRK13523 211 FVRISASD--YHPGGLTVQDYVQYAKWMKE-QGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANIATGA 280 (337)
T ss_pred EEEecccc--cCCCCCCHHHHHHHHHHHHH-cCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEE
Confidence 77776543 23457778766544 444 478877775532 111245667788777888655
No 277
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=72.73 E-value=73 Score=28.70 Aligned_cols=66 Identities=17% Similarity=0.102 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhcCCCCEEEEecC-CCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeE
Q 025860 72 KDFHRRRVQVLVESAPDLIAFETI-PNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVS 150 (247)
Q Consensus 72 ~~~~~~q~~~l~~~gvD~i~~ET~-~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~a 150 (247)
+..|..-++.|.++|||+|- ||- +.+ +...+...|... +.|+++- =.+++++.+... .|++.
T Consensus 73 K~~~~~Ea~~L~eaGvDiID-aT~r~rP--~~~~~~~iK~~~-~~l~MAD-----------~stleEal~a~~--~Gad~ 135 (283)
T cd04727 73 RIGHFVEAQILEALGVDMID-ESEVLTP--ADEEHHIDKHKF-KVPFVCG-----------ARNLGEALRRIS--EGAAM 135 (283)
T ss_pred ehhHHHHHHHHHHcCCCEEe-ccCCCCc--HHHHHHHHHHHc-CCcEEcc-----------CCCHHHHHHHHH--CCCCE
Confidence 34556678889999999995 876 334 344555566543 6777743 346677766554 35666
Q ss_pred EEEc
Q 025860 151 VGIN 154 (247)
Q Consensus 151 vG~N 154 (247)
||--
T Consensus 136 I~TT 139 (283)
T cd04727 136 IRTK 139 (283)
T ss_pred EEec
Confidence 6544
No 278
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=72.62 E-value=21 Score=32.13 Aligned_cols=63 Identities=13% Similarity=0.183 Sum_probs=43.8
Q ss_pred HHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcC
Q 025860 77 RRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINC 155 (247)
Q Consensus 77 ~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC 155 (247)
+|+...+++|+|.|++..|+ +++++.+++.++.. . .+.. ..|.++..+.+... .|+|.|-+-.
T Consensus 204 ee~~ea~~~gaDiImLDn~s-~e~l~~av~~~~~~---~--~lea--------SGgI~~~ni~~yA~--tGVD~Is~ga 266 (281)
T PRK06543 204 DQIEPVLAAGVDTIMLDNFS-LDDLREGVELVDGR---A--IVEA--------SGNVNLNTVGAIAS--TGVDVISVGA 266 (281)
T ss_pred HHHHHHHhcCCCEEEECCCC-HHHHHHHHHHhCCC---e--EEEE--------ECCCCHHHHHHHHh--cCCCEEEeCc
Confidence 34555667999999999976 99999999877632 1 2222 25678888877654 4788776554
No 279
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=72.59 E-value=28 Score=31.29 Aligned_cols=64 Identities=17% Similarity=0.207 Sum_probs=44.7
Q ss_pred HHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEc
Q 025860 77 RRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGIN 154 (247)
Q Consensus 77 ~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~N 154 (247)
+|++..+++|+|+|++--|+ ++|++.+++.++ . ...+.+..+ .|.+++.+-... . .++|.|-+-
T Consensus 199 e~~~eAl~agaDiImLDNm~-~e~~~~av~~l~-~--~~~~~lEaS--------GgIt~~ni~~yA-~-tGVD~IS~g 262 (280)
T COG0157 199 EEAEEALEAGADIIMLDNMS-PEELKEAVKLLG-L--AGRALLEAS--------GGITLENIREYA-E-TGVDVISVG 262 (280)
T ss_pred HHHHHHHHcCCCEEEecCCC-HHHHHHHHHHhc-c--CCceEEEEe--------CCCCHHHHHHHh-h-cCCCEEEeC
Confidence 34555666999999999987 899999998762 2 245665553 567777777654 3 478876543
No 280
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=72.43 E-value=66 Score=28.08 Aligned_cols=97 Identities=15% Similarity=0.188 Sum_probs=65.7
Q ss_pred HHHHHHHHhcC-CCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCc----HHHHHHHHHhCCCCe
Q 025860 75 HRRRVQVLVES-APDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDS----LLECASIAESCKRVV 149 (247)
Q Consensus 75 ~~~q~~~l~~~-gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~----~~~~~~~~~~~~~~~ 149 (247)
|.+.++.+.+. ++|++=+|-...-...+.++...++. + +++|..= .++++ +.+.+..+.. .+++
T Consensus 80 ~i~ll~~la~~~~~d~iDiEl~~~~~~~~~~~~~~~~~--~--vI~SyH~------F~~TP~~~~i~~~l~km~~-~~aD 148 (231)
T COG0710 80 YIELLKKLAELNGPDYIDIELSSPEDDVKEIIKFAKKH--G--VIVSYHD------FEKTPPLEEIIERLDKMES-LGAD 148 (231)
T ss_pred HHHHHHHHHhhcCCCEEEEEccCcchhHHHHHhccccC--C--EEEEecc------CCCCCcHHHHHHHHHHHHh-hCCC
Confidence 44455566653 59999999888766666666655554 2 7777742 24555 6666666665 5789
Q ss_pred EEEEcCC--ChhHHHHHHHHHHhh--cCCCEEEEeCC
Q 025860 150 SVGINCT--PPRFISGLILIIKKV--TAKPILIYPNS 182 (247)
Q Consensus 150 avG~NC~--~p~~~~~~l~~l~~~--~~~pl~vyPNa 182 (247)
.+=|-|. +.+..+.+|+..+.. ...|+++.+=+
T Consensus 149 ivKiAvm~~~~~DvL~ll~~~~~~~~~~~p~i~i~MG 185 (231)
T COG0710 149 IVKIAVMPQSKEDVLDLLEATREFKEAEKPVITISMG 185 (231)
T ss_pred eEEEEecCCCHHHHHHHHHHHHhccccCCCEEEEecC
Confidence 9999996 578888898877654 47787655543
No 281
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=72.41 E-value=74 Score=28.62 Aligned_cols=97 Identities=7% Similarity=-0.036 Sum_probs=62.8
Q ss_pred HHHHHhcCCCCEEEEecCC--------------CHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHH
Q 025860 78 RVQVLVESAPDLIAFETIP--------------NKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAE 143 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~--------------~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~ 143 (247)
-++.+.++||..|-+|-.. +.+|+..=++++++...+.+++|---.+ .. ....++++++..+
T Consensus 93 tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTD--a~--~~~g~deAI~Ra~ 168 (285)
T TIGR02317 93 TVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTD--AR--AVEGLDAAIERAK 168 (285)
T ss_pred HHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcC--cc--cccCHHHHHHHHH
Confidence 5777888999999999742 5667666677776653344566544332 22 2345888888775
Q ss_pred h--CCCCeEEEEcCC-ChhHHHHHHHHHHhhcCCCEEEEeCC
Q 025860 144 S--CKRVVSVGINCT-PPRFISGLILIIKKVTAKPILIYPNS 182 (247)
Q Consensus 144 ~--~~~~~avG~NC~-~p~~~~~~l~~l~~~~~~pl~vyPNa 182 (247)
. ..|+|+|-+-+. +.+.+..+.+. .+.|+.+-+-.
T Consensus 169 ay~~AGAD~vfi~g~~~~e~i~~~~~~----i~~Pl~~n~~~ 206 (285)
T TIGR02317 169 AYVEAGADMIFPEALTSLEEFRQFAKA----VKVPLLANMTE 206 (285)
T ss_pred HHHHcCCCEEEeCCCCCHHHHHHHHHh----cCCCEEEEecc
Confidence 3 258999988775 56665555444 45888655543
No 282
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=72.31 E-value=20 Score=31.89 Aligned_cols=62 Identities=19% Similarity=0.267 Sum_probs=41.7
Q ss_pred HHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcC
Q 025860 78 RVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINC 155 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC 155 (247)
|+....+.|+|.|.+..|+ +++++.+++.++. ++|+.++ -|-++..+.+.+. .|+++|-+-.
T Consensus 194 ea~~A~~~gaDyI~ld~~~-~e~l~~~~~~~~~---~ipi~Ai----------GGI~~~ni~~~a~--~Gvd~Iav~s 255 (268)
T cd01572 194 QLKEALEAGADIIMLDNMS-PEELREAVALLKG---RVLLEAS----------GGITLENIRAYAE--TGVDYISVGA 255 (268)
T ss_pred HHHHHHHcCCCEEEECCcC-HHHHHHHHHHcCC---CCcEEEE----------CCCCHHHHHHHHH--cCCCEEEEEe
Confidence 3444556899999999986 7888887776543 3665543 4777777776554 4677665543
No 283
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=71.84 E-value=43 Score=29.82 Aligned_cols=146 Identities=11% Similarity=0.050 Sum_probs=70.5
Q ss_pred HHHHHhcCCCCEEEEe------------cCC-CHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHh
Q 025860 78 RVQVLVESAPDLIAFE------------TIP-NKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAES 144 (247)
Q Consensus 78 q~~~l~~~gvD~i~~E------------T~~-~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~ 144 (247)
-++++-++|+|+|++= |++ +++|+.--.+++++-.++..+++-+-|-.-. ...-+.+..+.+.+.+
T Consensus 28 ~A~~~d~agvD~iLVGDSlgmv~~G~~sT~~vtld~mi~h~~aV~Rga~~~~vv~DmPf~sy~-~s~e~av~nA~rl~ke 106 (261)
T PF02548_consen 28 SARIADEAGVDIILVGDSLGMVVLGYDSTLPVTLDEMIYHTKAVRRGAPNAFVVADMPFGSYQ-ASPEQAVRNAGRLMKE 106 (261)
T ss_dssp HHHHHHHTT-SEEEE-TTHHHHTT--SSSTT--HHHHHHHHHHHHHH-TSSEEEEE--TTSST-SSHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCEEEeCCcHHHheeCCCCCcCcCHHHHHHHHHHHHhcCCCceEEecCCccccc-CCHHHHHHHHHHHHHh
Confidence 4555667999999873 222 4566666677777654345566666553221 1122344455565665
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHhhcCCCEEEEeCCCC-ccccc-ccccccCCC--CChHHHHHHHHHHHHcCCeEEe
Q 025860 145 CKRVVSVGINCTPPRFISGLILIIKKVTAKPILIYPNSGE-FYDAD-RKEWVQNTG--VSDEDFVSYVSKWCEVGASLVG 220 (247)
Q Consensus 145 ~~~~~avG~NC~~p~~~~~~l~~l~~~~~~pl~vyPNaG~-~~d~~-~~~~~~~~~--~~~~~~~~~~~~~~~~G~~iIG 220 (247)
.++++|=+-... .+.+.++.|.+. .+|++-. -|. +.... ...|.-... .+...+.+.++.+-++|+-.|=
T Consensus 107 -~GadaVKlEGg~--~~~~~i~~l~~~-GIPV~gH--iGLtPQ~~~~~GGyr~qGk~~~~a~~l~~~A~ale~AGaf~iv 180 (261)
T PF02548_consen 107 -AGADAVKLEGGA--EIAETIKALVDA-GIPVMGH--IGLTPQSVHQLGGYRVQGKTAEEAEKLLEDAKALEEAGAFAIV 180 (261)
T ss_dssp -TT-SEEEEEBSG--GGHHHHHHHHHT-T--EEEE--EES-GGGHHHHTSS--CSTSHHHHHHHHHHHHHHHHHT-SEEE
T ss_pred -cCCCEEEeccch--hHHHHHHHHHHC-CCcEEEE--ecCchhheeccCCceEEecCHHHHHHHHHHHHHHHHcCccEEe
Confidence 589999888863 345566666543 6774322 232 11000 001111111 1234566777777777864432
Q ss_pred ecCCCChHHHHH
Q 025860 221 GCCRTTPNTIKG 232 (247)
Q Consensus 221 GCCGt~P~hI~a 232 (247)
..-.|+.+..
T Consensus 181 --lE~vp~~la~ 190 (261)
T PF02548_consen 181 --LECVPAELAK 190 (261)
T ss_dssp --EESBBHHHHH
T ss_pred --eecCHHHHHH
Confidence 2335655544
No 284
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=71.66 E-value=20 Score=31.62 Aligned_cols=62 Identities=15% Similarity=0.066 Sum_probs=37.9
Q ss_pred CCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEc-CC-C-hh-----HHHHHHHHHHhhcCCCEEEEe
Q 025860 114 KIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGIN-CT-P-PR-----FISGLILIIKKVTAKPILIYP 180 (247)
Q Consensus 114 ~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~N-C~-~-p~-----~~~~~l~~l~~~~~~pl~vyP 180 (247)
++||+++- +...+-+.+..+++++....+-..+.+- |+ . |. .-...+..+++..+.|+++=|
T Consensus 122 gkPVilk~-----G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~ 191 (250)
T PRK13397 122 DKPILFKR-----GLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKTDLPIIVDV 191 (250)
T ss_pred CCeEEEeC-----CCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHhCCCeEECC
Confidence 68998764 3333445666778877764344566666 75 2 21 123667777776788877644
No 285
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=71.39 E-value=10 Score=33.72 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHH
Q 025860 67 TVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAE 106 (247)
Q Consensus 67 s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~ 106 (247)
+.++. +.-.++++++.++|+|.|++|-+| .+.++.+.+
T Consensus 155 t~~~a-~~~i~~A~a~e~AGA~~ivlE~vp-~~~a~~It~ 192 (263)
T TIGR00222 155 DEEAA-KKLLEDALALEEAGAQLLVLECVP-VELAAKITE 192 (263)
T ss_pred CHHHH-HHHHHHHHHHHHcCCCEEEEcCCc-HHHHHHHHH
Confidence 44444 445558999999999999999999 455555444
No 286
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=71.32 E-value=63 Score=27.37 Aligned_cols=76 Identities=12% Similarity=0.182 Sum_probs=45.0
Q ss_pred HHHHhcCCCCEEEEecCCCH-----HHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCC-CcHHHHHHHHHhCCCCeEEE
Q 025860 79 VQVLVESAPDLIAFETIPNK-----IEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSG-DSLLECASIAESCKRVVSVG 152 (247)
Q Consensus 79 ~~~l~~~gvD~i~~ET~~~~-----~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G-~~~~~~~~~~~~~~~~~avG 152 (247)
++.+.+.|+|.|.+=++... .....+.+..+.. +.|++++= | .+++++-+.+ . .+++.+-
T Consensus 36 a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~~--~~pv~~~G----------GI~~~ed~~~~~-~-~Ga~~vi 101 (233)
T PRK00748 36 AKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVKAV--DIPVQVGG----------GIRSLETVEALL-D-AGVSRVI 101 (233)
T ss_pred HHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHHC--CCCEEEcC----------CcCCHHHHHHHH-H-cCCCEEE
Confidence 33444578999988776443 2233333333433 57888632 2 3556665544 3 4788888
Q ss_pred EcCC---ChhHHHHHHHHH
Q 025860 153 INCT---PPRFISGLILII 168 (247)
Q Consensus 153 ~NC~---~p~~~~~~l~~l 168 (247)
++.. .|+.+.++.+.+
T Consensus 102 lg~~~l~~~~~l~ei~~~~ 120 (233)
T PRK00748 102 IGTAAVKNPELVKEACKKF 120 (233)
T ss_pred ECchHHhCHHHHHHHHHHh
Confidence 9985 466666666655
No 287
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=71.25 E-value=51 Score=28.70 Aligned_cols=81 Identities=15% Similarity=0.089 Sum_probs=53.1
Q ss_pred EEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHH---hCCCCeEEEEcCCC-----hhH
Q 025860 89 LIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAE---SCKRVVSVGINCTP-----PRF 160 (247)
Q Consensus 89 ~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~---~~~~~~avG~NC~~-----p~~ 160 (247)
+-+++|+-++.-++.+=+.+.+.+..+.+++.+....+.. .+|.+++++...+. +..++...|+.|.. |+.
T Consensus 94 ~~~ihSlDr~klA~~l~kra~~~~~~l~v~iQVNi~~E~s-K~G~~~~e~~~~~~~~~~~~~L~l~GLM~ipp~~~d~~~ 172 (228)
T COG0325 94 FDWIHSLDRLKLAKELNKRALELPKPLNVLIQVNISGEES-KSGVPPEELDELAQEVQELPNLELRGLMTIPPLTDDPEE 172 (228)
T ss_pred cceeeecCHHHHHHHHHHHHHhCCCCceEEEEEecCCccc-cCCCCHHHHHHHHHHHHhCCCCeEeEEEeeCCCCCCHHH
Confidence 4466777777666666553444432477888888755433 37888888766553 46788999999963 455
Q ss_pred HHHHHHHHHh
Q 025860 161 ISGLILIIKK 170 (247)
Q Consensus 161 ~~~~l~~l~~ 170 (247)
....++.+++
T Consensus 173 ~~~~F~~l~~ 182 (228)
T COG0325 173 IFAVFRKLRK 182 (228)
T ss_pred HHHHHHHHHH
Confidence 5556655544
No 288
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=70.84 E-value=77 Score=28.22 Aligned_cols=113 Identities=19% Similarity=0.260 Sum_probs=68.5
Q ss_pred CCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCc
Q 025860 37 RPILVAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIP 116 (247)
Q Consensus 37 ~~~~VaGsiGP~g~~l~~g~eY~g~y~~~~s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~p 116 (247)
.+.+|..++ |||+ |. .|.+ ++++.-++.+.++|+|.+=+|-= .|+...++.+.+. .+|
T Consensus 75 ~~~~vv~Dm-PF~s-----------y~--~s~~---~a~~nA~r~~ke~gA~aVKlEGG---~~~~~~i~~L~~~--gIP 132 (268)
T COG0413 75 PNAFVVADL-PFGS-----------YE--VSPE---QALKNAARLMKEAGADAVKLEGG---EEMAETIKRLTER--GIP 132 (268)
T ss_pred CCeeEEeCC-CCcc-----------cC--CCHH---HHHHHHHHHHHHhCCCEEEEcCC---HHHHHHHHHHHHc--CCc
Confidence 356676666 6653 32 2443 34445666667799999999986 5555566666665 589
Q ss_pred EEEEEEEcCC------CcccCCCcHHHHHHH------HHhCCCCeEEEEcCCChhHHHHHHHHHHhhcCCCE
Q 025860 117 AWFSFNSKDG------VNVVSGDSLLECASI------AESCKRVVSVGINCTPPRFISGLILIIKKVTAKPI 176 (247)
Q Consensus 117 v~is~~~~~~------~~l~~G~~~~~~~~~------~~~~~~~~avG~NC~~p~~~~~~l~~l~~~~~~pl 176 (247)
|.--+=+.+. +.=.-|.+-+++-+. +.+ .|+.++-+.|+. + ++-+.+.+..++|.
T Consensus 133 V~gHiGLtPQ~v~~~GGykvqGr~~~~a~~l~~dA~ale~-AGaf~ivlE~Vp-~---~lA~~IT~~lsiPt 199 (268)
T COG0413 133 VMGHIGLTPQSVNWLGGYKVQGRTEESAEKLLEDAKALEE-AGAFALVLECVP-A---ELAKEITEKLSIPT 199 (268)
T ss_pred eEEEecCChhhhhccCCeeeecCCHHHHHHHHHHHHHHHh-cCceEEEEeccH-H---HHHHHHHhcCCCCE
Confidence 8877655432 222234443433333 334 689999999995 3 34455555566773
No 289
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins. This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)
Probab=70.46 E-value=31 Score=29.87 Aligned_cols=67 Identities=15% Similarity=0.099 Sum_probs=49.4
Q ss_pred EEecCCCHHHHHHHHHHHHhh--CCCCcEEEEEEEcCCCcccCCCcHHH---HHHHHH-hCCCCeEEEEcCCCh
Q 025860 91 AFETIPNKIEAQAYAELLEEE--NIKIPAWFSFNSKDGVNVVSGDSLLE---CASIAE-SCKRVVSVGINCTPP 158 (247)
Q Consensus 91 ~~ET~~~~~E~~aa~~~~~~~--~~~~pv~is~~~~~~~~l~~G~~~~~---~~~~~~-~~~~~~avG~NC~~p 158 (247)
+++|+-++.-+..+-+++.+. +..++|++.+.+..+.. +.|.++++ .++.+. ...++...|+.|.+|
T Consensus 92 ~ihsvDs~~la~~L~~~a~~~~~~~~~~VlIqVn~g~e~~-K~Gv~~~e~~~l~~~i~~~~~~L~l~GLMt~~~ 164 (227)
T cd06822 92 MVETVDSEKLADKLNKAWEKLGEREPLKVMVQVNTSGEES-KSGLEPSEAVELVKHIIEECPNLKFSGLMTIGS 164 (227)
T ss_pred EEEecCCHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC-CCCCCHHHHHHHHHHHHhhCCCceEEEEEeeCC
Confidence 569999999998888887776 65689999998765432 57876654 444454 556788999999643
No 290
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=70.20 E-value=77 Score=27.91 Aligned_cols=98 Identities=12% Similarity=0.163 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEec---------CCCHHHHHH---HHHHHHhhCCCCcEEEEEEEcCCCcccCCC
Q 025860 66 ITVETLKDFHRRRVQVLVESAPDLIAFET---------IPNKIEAQA---YAELLEEENIKIPAWFSFNSKDGVNVVSGD 133 (247)
Q Consensus 66 ~s~~e~~~~~~~q~~~l~~~gvD~i~~ET---------~~~~~E~~a---a~~~~~~~~~~~pv~is~~~~~~~~l~~G~ 133 (247)
.+.+++.+ +++.+++.|+|+|=+-. ++--+|.+- +++.+++.. +.| +|+...
T Consensus 21 ~~~~~~~~----~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~-~~p--lSIDT~--------- 84 (257)
T cd00739 21 LSLDKAVA----HAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL-DVL--ISVDTF--------- 84 (257)
T ss_pred CCHHHHHH----HHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCc--EEEeCC---------
Confidence 46667666 56666779999997732 233445444 455555432 345 566422
Q ss_pred cHHHHHHHHHhCCCCeEEE-EcCCC-hhHHHHHHHHHHhhcCCCEEEEeCCCCc
Q 025860 134 SLLECASIAESCKRVVSVG-INCTP-PRFISGLILIIKKVTAKPILIYPNSGEF 185 (247)
Q Consensus 134 ~~~~~~~~~~~~~~~~avG-~NC~~-p~~~~~~l~~l~~~~~~pl~vyPNaG~~ 185 (247)
. .++++...+ .+++.|- ++... .+.+.++++ + .+.++++.++.|.+
T Consensus 85 ~-~~v~e~al~-~G~~iINdisg~~~~~~~~~l~~---~-~~~~vV~m~~~g~p 132 (257)
T cd00739 85 R-AEVARAALE-AGADIINDVSGGSDDPAMLEVAA---E-YGAPLVLMHMRGTP 132 (257)
T ss_pred C-HHHHHHHHH-hCCCEEEeCCCCCCChHHHHHHH---H-cCCCEEEECCCCCC
Confidence 1 234443333 2555433 33321 133444443 3 37899999988754
No 291
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=70.18 E-value=89 Score=28.68 Aligned_cols=115 Identities=10% Similarity=0.057 Sum_probs=61.3
Q ss_pred CCHHH---HHHHHHHHHHHHhcCCCCEEEEec------------CCC----------HHHHHH---HHHHHHhh-CC--C
Q 025860 66 ITVET---LKDFHRRRVQVLVESAPDLIAFET------------IPN----------KIEAQA---YAELLEEE-NI--K 114 (247)
Q Consensus 66 ~s~~e---~~~~~~~q~~~l~~~gvD~i~~ET------------~~~----------~~E~~a---a~~~~~~~-~~--~ 114 (247)
+|.+| +.+.|.+-++.+.++|.|.|=+=. ..+ ...++. +++++|+. +. .
T Consensus 134 mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~ 213 (353)
T cd04735 134 LTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHAD 213 (353)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccC
Confidence 55544 556777777788889999985542 111 122333 44455553 20 0
Q ss_pred CcEEEEEEEcCCCcccCCCcHHHHH---HHHHhCCCCeEEEEcCC---Ch-----hHHHHHHHHHHhhc--CCCEEEEeC
Q 025860 115 IPAWFSFNSKDGVNVVSGDSLLECA---SIAESCKRVVSVGINCT---PP-----RFISGLILIIKKVT--AKPILIYPN 181 (247)
Q Consensus 115 ~pv~is~~~~~~~~l~~G~~~~~~~---~~~~~~~~~~avG~NC~---~p-----~~~~~~l~~l~~~~--~~pl~vyPN 181 (247)
.++.+.+-+........|.++++.+ +.+.+ .+++.|.+-+. .. ..-...++.+++.. +.|+++ |
T Consensus 214 ~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~-~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~--~ 290 (353)
T cd04735 214 KDFILGYRFSPEEPEEPGIRMEDTLALVDKLAD-KGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIA--V 290 (353)
T ss_pred CCceEEEEECcccccCCCCCHHHHHHHHHHHHH-cCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEE--E
Confidence 3444555444333334677777654 44444 57888877652 11 11233445555554 567553 4
Q ss_pred CC
Q 025860 182 SG 183 (247)
Q Consensus 182 aG 183 (247)
+|
T Consensus 291 Gg 292 (353)
T cd04735 291 GS 292 (353)
T ss_pred CC
Confidence 44
No 292
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=70.00 E-value=78 Score=27.92 Aligned_cols=97 Identities=23% Similarity=0.211 Sum_probs=55.9
Q ss_pred HHHHHhcCCCCEEEEec-----------CCCHHH----HHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHH
Q 025860 78 RVQVLVESAPDLIAFET-----------IPNKIE----AQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIA 142 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET-----------~~~~~E----~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~ 142 (247)
-++...+.|+|.|-+-. -.+.+| ++.+++.+++. ++.+.+++. +-.+. +=+.+.+.++.+
T Consensus 76 di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~--G~~v~~~~e--da~r~-~~~~l~~~~~~~ 150 (262)
T cd07948 76 DARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSK--GIEVRFSSE--DSFRS-DLVDLLRVYRAV 150 (262)
T ss_pred HHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEE--eeCCC-CHHHHHHHHHHH
Confidence 35556678999876632 112234 44444555654 345544443 22221 112244555555
Q ss_pred HhCCCCeEEEEcCC----ChhHHHHHHHHHHhhcCCCEEEEe
Q 025860 143 ESCKRVVSVGINCT----PPRFISGLILIIKKVTAKPILIYP 180 (247)
Q Consensus 143 ~~~~~~~avG~NC~----~p~~~~~~l~~l~~~~~~pl~vyP 180 (247)
.+ .+++.|.+-=+ .|+.+..+++.+++..+.|+.+..
T Consensus 151 ~~-~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~~~i~~H~ 191 (262)
T cd07948 151 DK-LGVNRVGIADTVGIATPRQVYELVRTLRGVVSCDIEFHG 191 (262)
T ss_pred HH-cCCCEEEECCcCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 55 47787766543 399999999999887777775554
No 293
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=69.91 E-value=76 Score=27.78 Aligned_cols=120 Identities=10% Similarity=0.017 Sum_probs=74.0
Q ss_pred HHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCC-ChhHHHHHHHHHHhhcCCCEEEEeCC
Q 025860 104 YAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT-PPRFISGLILIIKKVTAKPILIYPNS 182 (247)
Q Consensus 104 a~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~-~p~~~~~~l~~l~~~~~~pl~vyPNa 182 (247)
+++-+++.+ .+|++-+-+.|- +.+...+++.+.+ .+++++-++.. +.+.|.++++.+....+..+.+--|.
T Consensus 54 ~~~el~~~~--~~VflDlK~~DI-----pnT~~~~~~~~~~-~g~d~vtvH~~~G~~~~~~~~e~~~~~~~~vl~vT~lt 125 (240)
T COG0284 54 ILEELKARG--KKVFLDLKLADI-----PNTVALAAKAAAD-LGADAVTVHAFGGFDMLRAAKEALEAGGPFVLAVTSLT 125 (240)
T ss_pred HHHHHHHhC--CceEEeeecccc-----hHHHHHHHHHhhh-cCCcEEEEeCcCCHHHHHHHHHHHhhcCceEEEEEeCC
Confidence 444455553 388888887664 4566778877766 68999999997 78888888887766544567777777
Q ss_pred CCcc-cccccccccCCCCChHHHHHHHHHHHHcCCeEEeecCCCChHHHHHHHHHhh
Q 025860 183 GEFY-DADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCRTTPNTIKGIYRTLS 238 (247)
Q Consensus 183 G~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iIGGCCGt~P~hI~al~~~l~ 238 (247)
+.-. +-....+.. ...+.+.+.++.+...|. +|.- ++|++.+++++...
T Consensus 126 s~~~~~~~~~~~~~---~~~~~v~~~a~~~~~~G~--dgvv--~~~~e~~~ir~~~g 175 (240)
T COG0284 126 SMGELQLAELGINS---SLEEQVLRLAKLAGEAGL--DGVV--CSAEEVAAIREILG 175 (240)
T ss_pred Cchhhhhhhccccc---hHHHHHHHHHHHhccCCc--eEEE--cCHHHHHHHHHhcC
Confidence 6411 100001111 112345566666665554 5543 45778888876654
No 294
>PTZ00344 pyridoxal kinase; Provisional
Probab=69.81 E-value=40 Score=29.99 Aligned_cols=99 Identities=8% Similarity=-0.060 Sum_probs=54.9
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCC---CcEEEEEEEcCCCccc
Q 025860 54 DGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIK---IPAWFSFNSKDGVNVV 130 (247)
Q Consensus 54 ~g~eY~g~y~~~~s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~---~pv~is~~~~~~~~l~ 130 (247)
+...|....++.++.+++.+..+...+......+|+++.=.+++.+-+..+.+.+++.... .++++--...+.+.+-
T Consensus 45 ~~~~~~~~~g~~i~~~~~~~~l~~l~~~~~~~~~~~v~sG~l~~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~ 124 (296)
T PTZ00344 45 NHTGYPVIKGHRLDLNELITLMDGLRANNLLSDYTYVLTGYINSADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLY 124 (296)
T ss_pred CCCCCCCccCeeCCHHHHHHHHHHHHhcCCcccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceE
Confidence 3333433334446776766644422221223468999999999988888888888653211 2344332233455555
Q ss_pred CCCcHHHHHHHHHhCCCCeEEEEc
Q 025860 131 SGDSLLECASIAESCKRVVSVGIN 154 (247)
Q Consensus 131 ~G~~~~~~~~~~~~~~~~~avG~N 154 (247)
.+..+.++++.+.. .++.+=.|
T Consensus 125 ~~~~~~~~~~~ll~--~~dii~pN 146 (296)
T PTZ00344 125 VKEEVVDAYRELIP--YADVITPN 146 (296)
T ss_pred eCHHHHHHHHHHhh--hCCEEeCC
Confidence 66666666665432 34544444
No 295
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=69.72 E-value=94 Score=28.74 Aligned_cols=145 Identities=17% Similarity=0.098 Sum_probs=77.4
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEecCCC-HHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHh
Q 025860 66 ITVETLKDFHRRRVQVLVESAPDLIAFETIPN-KIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAES 144 (247)
Q Consensus 66 ~s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~-~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~ 144 (247)
.+.++..+ .++.|.+.|||.|=+-...+ ..|. ..++.+.+... ..-++++.- ...+-++.+.+
T Consensus 19 ~s~~~k~~----ia~~L~~~Gv~~IEvG~p~~~~~~~-e~i~~i~~~~~-~~~v~~~~r----------~~~~di~~a~~ 82 (363)
T TIGR02090 19 LTVEQKVE----IARKLDELGVDVIEAGFPIASEGEF-EAIKKISQEGL-NAEICSLAR----------ALKKDIDKAID 82 (363)
T ss_pred CCHHHHHH----HHHHHHHcCCCEEEEeCCCCChHHH-HHHHHHHhcCC-CcEEEEEcc----------cCHHHHHHHHH
Confidence 57777666 66667889999985433323 3443 33444443332 233334431 11223444444
Q ss_pred CCCCeEEEEcCC-ChhH------------HHHHHHHHHhh--cCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHH
Q 025860 145 CKRVVSVGINCT-PPRF------------ISGLILIIKKV--TAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVS 209 (247)
Q Consensus 145 ~~~~~avG~NC~-~p~~------------~~~~l~~l~~~--~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~ 209 (247)
.+++.|.+-.. ++.+ +..+.+.++.. ....+.+.+ .|. ...+++.+.+.++
T Consensus 83 -~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~-----eda--------~r~~~~~l~~~~~ 148 (363)
T TIGR02090 83 -CGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSA-----EDA--------TRTDIDFLIKVFK 148 (363)
T ss_pred -cCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEE-----eec--------CCCCHHHHHHHHH
Confidence 46777777332 2222 22222222222 123332222 111 1135788999999
Q ss_pred HHHHcCCeEEeecC---CCChHHHHHHHHHhhCC
Q 025860 210 KWCEVGASLVGGCC---RTTPNTIKGIYRTLSNR 240 (247)
Q Consensus 210 ~~~~~G~~iIGGCC---Gt~P~hI~al~~~l~~~ 240 (247)
.+.+.|+..|.=|= ..+|+.+..+-+.+...
T Consensus 149 ~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~ 182 (363)
T TIGR02090 149 RAEEAGADRINIADTVGVLTPQKMEELIKKLKEN 182 (363)
T ss_pred HHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhcc
Confidence 99999999886332 24899999888777654
No 296
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=69.60 E-value=36 Score=32.08 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=16.2
Q ss_pred CCeEEeecCCC--ChHHHHHHHHHhh
Q 025860 215 GASLVGGCCRT--TPNTIKGIYRTLS 238 (247)
Q Consensus 215 G~~iIGGCCGt--~P~hI~al~~~l~ 238 (247)
.++|||.++-+ .|.++++|++.|+
T Consensus 164 ~VNiiG~~~~~~~~~~d~~ei~~lL~ 189 (430)
T cd01981 164 SVNLIGPSSLGFHNRHDCRELKRLLH 189 (430)
T ss_pred cEEEEcCCCCCCCCcchHHHHHHHHH
Confidence 37788877642 3777777777665
No 297
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=69.57 E-value=79 Score=27.80 Aligned_cols=126 Identities=17% Similarity=0.161 Sum_probs=68.3
Q ss_pred HHHHHhcCCCCEEEE-ecCCCH------HHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCc---HHHHHHHHHhCCC
Q 025860 78 RVQVLVESAPDLIAF-ETIPNK------IEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDS---LLECASIAESCKR 147 (247)
Q Consensus 78 q~~~l~~~gvD~i~~-ET~~~~------~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~---~~~~~~~~~~~~~ 147 (247)
.++.+++.|+|.+-+ .-+.+. ++++.+.+..++. +.|+.+-. ..+..++.++.+ +..+++...+ .+
T Consensus 98 ~ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~--g~pl~vi~-~~~g~~~e~~~~~~~i~~a~~~a~e-~G 173 (267)
T PRK07226 98 TVEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEW--GMPLLAMM-YPRGPGIKNEYDPEVVAHAARVAAE-LG 173 (267)
T ss_pred cHHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHc--CCcEEEEE-ecCCCccCCCccHHHHHHHHHHHHH-HC
Confidence 455567789885533 333332 2444444554544 57877743 222222222222 3334444444 58
Q ss_pred CeEEEEcCCChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEEeecCCCC
Q 025860 148 VVSVGINCTPPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCRTT 226 (247)
Q Consensus 148 ~~avG~NC~~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iIGGCCGt~ 226 (247)
+|.|=.+=.+. .++++.+....+.|+ +.-+|... .+.+++.+.+.+.+++|+. |-|+|..
T Consensus 174 AD~vKt~~~~~---~~~l~~~~~~~~ipV--~a~GGi~~------------~~~~~~l~~v~~~~~aGA~--Gis~gr~ 233 (267)
T PRK07226 174 ADIVKTNYTGD---PESFREVVEGCPVPV--VIAGGPKT------------DTDREFLEMVRDAMEAGAA--GVAVGRN 233 (267)
T ss_pred CCEEeeCCCCC---HHHHHHHHHhCCCCE--EEEeCCCC------------CCHHHHHHHHHHHHHcCCc--EEehhhh
Confidence 89887763321 234444444445774 44445310 1246688888888999998 7788853
No 298
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=69.54 E-value=75 Score=27.54 Aligned_cols=90 Identities=22% Similarity=0.209 Sum_probs=54.3
Q ss_pred HHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCC-CeEEEEcCC
Q 025860 78 RVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKR-VVSVGINCT 156 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~-~~avG~NC~ 156 (247)
.++.+.++|+|.+++=-.+ .+|....++.+++.+ +...+.++ ..++.+..-..+....+ +..+++|=+
T Consensus 96 fi~~~~~aG~~giiipDl~-~ee~~~~~~~~~~~g--~~~i~~i~--------P~T~~~~i~~i~~~~~~~vy~~s~~g~ 164 (242)
T cd04724 96 FLRDAKEAGVDGLIIPDLP-PEEAEEFREAAKEYG--LDLIFLVA--------PTTPDERIKKIAELASGFIYYVSRTGV 164 (242)
T ss_pred HHHHHHHCCCcEEEECCCC-HHHHHHHHHHHHHcC--CcEEEEeC--------CCCCHHHHHHHHhhCCCCEEEEeCCCC
Confidence 4556778999998875444 468888888888874 44443332 33444433333331223 345666653
Q ss_pred -C-----hhHHHHHHHHHHhhcCCCEEE
Q 025860 157 -P-----PRFISGLILIIKKVTAKPILI 178 (247)
Q Consensus 157 -~-----p~~~~~~l~~l~~~~~~pl~v 178 (247)
+ +..+...++.+++..+.|+.+
T Consensus 165 tG~~~~~~~~~~~~i~~lr~~~~~pI~v 192 (242)
T cd04724 165 TGARTELPDDLKELIKRIRKYTDLPIAV 192 (242)
T ss_pred CCCccCCChhHHHHHHHHHhcCCCcEEE
Confidence 2 245677788888777788755
No 299
>PRK04302 triosephosphate isomerase; Provisional
Probab=69.53 E-value=54 Score=27.95 Aligned_cols=24 Identities=13% Similarity=0.068 Sum_probs=14.4
Q ss_pred HHHHHhcCCCCEEEEecCCCHHHHHH
Q 025860 78 RVQVLVESAPDLIAFETIPNKIEAQA 103 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~~E~~a 103 (247)
.++...+.|.+.|+ .+++.++++.
T Consensus 106 ~v~~a~~~Gl~~I~--~v~~~~~~~~ 129 (223)
T PRK04302 106 VVERAKKLGLESVV--CVNNPETSAA 129 (223)
T ss_pred HHHHHHHCCCeEEE--EcCCHHHHHH
Confidence 44445557887773 4466666664
No 300
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=69.51 E-value=88 Score=28.31 Aligned_cols=139 Identities=15% Similarity=0.129 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhcCCCCEEE-Ee---cCCCHHHHHH--------HHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHH
Q 025860 71 LKDFHRRRVQVLVESAPDLIA-FE---TIPNKIEAQA--------YAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLEC 138 (247)
Q Consensus 71 ~~~~~~~q~~~l~~~gvD~i~-~E---T~~~~~E~~a--------a~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~ 138 (247)
+.+.-.+.++.++++|+|++. ++ ++-+.++.+. +++.+++...+.|++ -++. |+ ...
T Consensus 178 ~t~~~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~il-h~cg--------~~--~~~ 246 (338)
T TIGR01464 178 LTDATIEYLVEQVKAGAQAVQIFDSWAGALSPEDFEEFVLPYLKKIIEEVKARLPNVPVI-LFAK--------GA--GHL 246 (338)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEE-EEeC--------Cc--HHH
Confidence 333445666777789999875 66 3555555543 233444431134443 3421 22 234
Q ss_pred HHHHHhCCCCeEEEEcCC-ChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCC-
Q 025860 139 ASIAESCKRVVSVGINCT-PPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGA- 216 (247)
Q Consensus 139 ~~~~~~~~~~~avG~NC~-~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~- 216 (247)
+..+.+ .++++++++-. +. ..+ ++..+.-+.++-|--. .-. . -++++..+.+++.++.+.
T Consensus 247 ~~~~~~-~~~~~~s~d~~~dl---~e~----~~~~~~~~~i~Gni~p-------~~l-~--gt~e~i~~~v~~~l~~~~~ 308 (338)
T TIGR01464 247 LEELAE-TGADVVGLDWTVDL---KEA----RKRVGPGVAIQGNLDP-------AVL-Y--APEEALEEKVEKILEAFGG 308 (338)
T ss_pred HHHHHh-cCCCEEEeCCCCCH---HHH----HHHhCCCeeEEeCCCh-------HHh-c--CCHHHHHHHHHHHHHHhcc
Confidence 556666 47899988875 32 222 2222333556666521 011 1 257889999999988644
Q ss_pred ---eEEeecC----CCChHHHHHHHHHhh
Q 025860 217 ---SLVGGCC----RTTPNTIKGIYRTLS 238 (247)
Q Consensus 217 ---~iIGGCC----Gt~P~hI~al~~~l~ 238 (247)
-|+.--| +|-++.|+++.++++
T Consensus 309 ~~g~Il~~Gc~i~~~tp~eni~a~v~a~~ 337 (338)
T TIGR01464 309 KSRYIFNLGHGILPDTPPENVKALVEYVH 337 (338)
T ss_pred CCCceecCCCcCCCCcCHHHHHHHHHHHh
Confidence 4665445 477899999988765
No 301
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=69.36 E-value=64 Score=26.66 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCCCCEEEEe-----cCCCHHHHHHHHHHHHhhCCCCcEEEEEEE
Q 025860 74 FHRRRVQVLVESAPDLIAFE-----TIPNKIEAQAYAELLEEENIKIPAWFSFNS 123 (247)
Q Consensus 74 ~~~~q~~~l~~~gvD~i~~E-----T~~~~~E~~aa~~~~~~~~~~~pv~is~~~ 123 (247)
...++++.+.+.|+|.|=+= .+++...-..+++.+++.. +.|+.+-+.+
T Consensus 12 ~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~-~~~v~v~lm~ 65 (210)
T TIGR01163 12 RLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYT-DLPIDVHLMV 65 (210)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcC-CCcEEEEeee
Confidence 45568888999999998663 3344333333444455442 5676544444
No 302
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=69.25 E-value=83 Score=27.94 Aligned_cols=69 Identities=10% Similarity=0.145 Sum_probs=41.2
Q ss_pred HHHHHHHhcC--CCCEEEEecC------------CCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHH
Q 025860 76 RRRVQVLVES--APDLIAFETI------------PNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASI 141 (247)
Q Consensus 76 ~~q~~~l~~~--gvD~i~~ET~------------~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~ 141 (247)
.+.++.+.++ ++|.|=+-.- .+.+.+..+++.+++.. ++|+++-+.. +-+...+.++.
T Consensus 106 ~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~-~~pv~vKi~~-------~~~~~~~~a~~ 177 (300)
T TIGR01037 106 AEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT-DVPVFAKLSP-------NVTDITEIAKA 177 (300)
T ss_pred HHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEECCC-------ChhhHHHHHHH
Confidence 3455556554 3888866521 24456667777777653 5788877641 11245566666
Q ss_pred HHhCCCCeEEEE
Q 025860 142 AESCKRVVSVGI 153 (247)
Q Consensus 142 ~~~~~~~~avG~ 153 (247)
+.+ .++++|-+
T Consensus 178 l~~-~G~d~i~v 188 (300)
T TIGR01037 178 AEE-AGADGLTL 188 (300)
T ss_pred HHH-cCCCEEEE
Confidence 665 57887754
No 303
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=68.75 E-value=64 Score=28.01 Aligned_cols=107 Identities=10% Similarity=0.041 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHHHHhcC---CCCE--EEEecCCCH---------------HHHHHHHHHHHhhCCCCcEEEEEEEcCC
Q 025860 67 TVETLKDFHRRRVQVLVES---APDL--IAFETIPNK---------------IEAQAYAELLEEENIKIPAWFSFNSKDG 126 (247)
Q Consensus 67 s~~e~~~~~~~q~~~l~~~---gvD~--i~~ET~~~~---------------~E~~aa~~~~~~~~~~~pv~is~~~~~~ 126 (247)
+.+++.+.++..++..+.. .++. ++-|.+.+- +-++.+.+++++..++.++++.= -
T Consensus 51 ~~~~~~~~~~~~i~~v~~ry~g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Nd----y 126 (254)
T smart00633 51 SKETLLARLENHIKTVVGRYKGKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYND----Y 126 (254)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEec----c
Confidence 4566666666666665541 2332 244655431 34456778888877677787751 1
Q ss_pred CcccC---CCcHHHHHHHHHhC-CCCeEEEEcCC------ChhHHHHHHHHHHhhcCCCEEE
Q 025860 127 VNVVS---GDSLLECASIAESC-KRVVSVGINCT------PPRFISGLILIIKKVTAKPILI 178 (247)
Q Consensus 127 ~~l~~---G~~~~~~~~~~~~~-~~~~avG~NC~------~p~~~~~~l~~l~~~~~~pl~v 178 (247)
+.... -..+.+.++.+.+. ..+++||+.+- .+..+...|+++.+. ++||.+
T Consensus 127 ~~~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l~~~~~~-g~pi~i 187 (254)
T smart00633 127 NTEEPNAKRQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAALDRFASL-GLEIQI 187 (254)
T ss_pred CCcCccHHHHHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHHHHHHHc-CCceEE
Confidence 11111 12445566666542 24789999984 246677888877654 778654
No 304
>PRK10481 hypothetical protein; Provisional
Probab=68.43 E-value=39 Score=29.34 Aligned_cols=105 Identities=12% Similarity=0.107 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEecCCCHHHHHH---HHH--------HHHhhC----------------------
Q 025860 66 ITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQA---YAE--------LLEEEN---------------------- 112 (247)
Q Consensus 66 ~s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~a---a~~--------~~~~~~---------------------- 112 (247)
+|.+.+...-+.+++.|.+.|+|.|++=...++-++.+ ++. ++....
T Consensus 70 ~s~~~v~~~lq~~i~~l~~~g~d~ivl~Ctgdfp~l~a~r~~l~~P~~~i~~lv~Al~~g~riGVitP~~~qi~~~~~kw 149 (224)
T PRK10481 70 VSKQKVERDLQSVIEVLDNQGYDVILLLCTGEFPSLTARNAILLEPSRILPPLVAAIVGGHQVGVIVPVEEQLAQQAQKW 149 (224)
T ss_pred EEHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCCCccccCccccCchhhHHHHHHHhcCCCeEEEEEeCHHHHHHHHHHH
Confidence 47888888899999999999999999887766333222 111 111100
Q ss_pred --CCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCCChhHHHHHHHHHHhhcCCCE
Q 025860 113 --IKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTPPRFISGLILIIKKVTAKPI 176 (247)
Q Consensus 113 --~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~~p~~~~~~l~~l~~~~~~pl 176 (247)
.+.++. +.+.+.. ..+-..+.++++.+.. .++++|=+-|++... ...+.+++..++|+
T Consensus 150 ~~~G~~v~--~~~aspy-~~~~~~l~~aa~~L~~-~gaD~Ivl~C~G~~~--~~~~~le~~lg~PV 209 (224)
T PRK10481 150 QVLQKPPV--FALASPY-HGSEEELIDAGKELLD-QGADVIVLDCLGYHQ--RHRDLLQKALDVPV 209 (224)
T ss_pred HhcCCcee--EeecCCC-CCCHHHHHHHHHHhhc-CCCCEEEEeCCCcCH--HHHHHHHHHHCcCE
Confidence 011222 2222211 1111235566666665 689999999987542 33455566678886
No 305
>PRK00784 cobyric acid synthase; Provisional
Probab=68.31 E-value=73 Score=30.70 Aligned_cols=101 Identities=16% Similarity=0.165 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEecCCCHHHH------HHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHH-
Q 025860 67 TVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEA------QAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECA- 139 (247)
Q Consensus 67 s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~------~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~- 139 (247)
..+.+.+.|. .+. .+.|++++|-...+.|. ....++++.. +.||++-.... .|..+..+.
T Consensus 111 ~~~~I~~~~~----~l~-~~~D~vIVEGaGg~~~~~L~~~~~~~~dlak~l--~~PVILV~~~~------~g~~~~~i~~ 177 (488)
T PRK00784 111 LLEAVLESLD----RLA-AEYDVVVVEGAGSPAEINLRDRDIANMGFAEAA--DAPVILVADID------RGGVFASLVG 177 (488)
T ss_pred hHHHHHHHHH----HHH-hcCCEEEEECCCCccccCcccCCchhHHHHHHc--CCCEEEEEeCC------cCcHHHHHHH
Confidence 4455555553 233 46899999976444432 2356777876 58998865442 243444443
Q ss_pred --HHHHhC--CCCeEEEEcCCChh--HHHHHHHHHHhhcCCC-EEEEe
Q 025860 140 --SIAESC--KRVVSVGINCTPPR--FISGLILIIKKVTAKP-ILIYP 180 (247)
Q Consensus 140 --~~~~~~--~~~~avG~NC~~p~--~~~~~l~~l~~~~~~p-l~vyP 180 (247)
+.+... ..+.+|-+|+..++ .+....+.+.+..+.| +++-|
T Consensus 178 ~~~~l~~~~~~~i~GvI~N~v~~~~~~~~~~~~~l~~~~gipvLG~iP 225 (488)
T PRK00784 178 TLALLPPEERARVKGFIINKFRGDISLLEPGLDWLEELTGVPVLGVLP 225 (488)
T ss_pred HHHhcChhhCCcEEEEEEECCCCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 333311 25678999998533 3344544555555566 34444
No 306
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=68.24 E-value=34 Score=30.44 Aligned_cols=56 Identities=13% Similarity=0.109 Sum_probs=31.2
Q ss_pred hcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEE
Q 025860 83 VESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSV 151 (247)
Q Consensus 83 ~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~av 151 (247)
.+.|+|.|.+-.+. ..+++.+++.+++..+++|+.++ .|.++..+.+.+. .++++|
T Consensus 200 ~~~gaD~I~ld~~~-p~~l~~~~~~~~~~~~~i~i~As----------GGI~~~ni~~~~~--~Gvd~I 255 (272)
T cd01573 200 AEAGADILQLDKFS-PEELAELVPKLRSLAPPVLLAAA----------GGINIENAAAYAA--AGADIL 255 (272)
T ss_pred HHcCCCEEEECCCC-HHHHHHHHHHHhccCCCceEEEE----------CCCCHHHHHHHHH--cCCcEE
Confidence 34677777777664 35666666655543223554433 3566666665443 356665
No 307
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=68.22 E-value=25 Score=31.31 Aligned_cols=49 Identities=12% Similarity=0.194 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCCCCEEEEec----------CCCHHHH-HHHHHHHHhhCCCCcEEEEEEE
Q 025860 73 DFHRRRVQVLVESAPDLIAFET----------IPNKIEA-QAYAELLEEENIKIPAWFSFNS 123 (247)
Q Consensus 73 ~~~~~q~~~l~~~gvD~i~~ET----------~~~~~E~-~aa~~~~~~~~~~~pv~is~~~ 123 (247)
+.|.+.++.+. +|+|+|=+.. +.+..+. ..+++.+++.. ++|+++-++.
T Consensus 112 ~d~~~~a~~~~-~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~~-~~Pv~vKL~p 171 (295)
T PF01180_consen 112 EDWAELAKRLE-AGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREAV-DIPVFVKLSP 171 (295)
T ss_dssp HHHHHHHHHHH-HHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHHH-SSEEEEEE-S
T ss_pred HHHHHHHHHhc-CcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhcc-CCCEEEEecC
Confidence 34555666666 7899886641 2222332 33555666653 6899988864
No 308
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=68.20 E-value=29 Score=30.83 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=42.0
Q ss_pred HHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEE
Q 025860 78 RVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGI 153 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~ 153 (247)
|+....+.|+|.|.+..++ +++++.+++.++. .+|+.++ -|-+++.+...+. .|++.|.+
T Consensus 190 ea~~A~~~gaDyI~ld~~~-~e~lk~~v~~~~~---~ipi~As----------GGI~~~ni~~~a~--~Gvd~Isv 249 (265)
T TIGR00078 190 EAEEAAEAGADIIMLDNMK-PEEIKEAVQLLKG---RVLLEAS----------GGITLDNLEEYAE--TGVDVISS 249 (265)
T ss_pred HHHHHHHcCCCEEEECCCC-HHHHHHHHHHhcC---CCcEEEE----------CCCCHHHHHHHHH--cCCCEEEe
Confidence 4444566899999999976 5888887776542 3565543 4778787777554 47888887
No 309
>TIGR01346 isocit_lyase isocitrate lyase. Isocitrate lyase and malate synthase are the enzymes of the glyoxylate shunt, a pathway associated with the TCA cycle.
Probab=68.19 E-value=8.6 Score=37.41 Aligned_cols=59 Identities=17% Similarity=0.142 Sum_probs=38.7
Q ss_pred CCCCEEEEec-CCCHHHHHHHHHHHHhhCCCCcEEEEEE--EcCCCcccCCCcHHHHHHHHHh
Q 025860 85 SAPDLIAFET-IPNKIEAQAYAELLEEENIKIPAWFSFN--SKDGVNVVSGDSLLECASIAES 144 (247)
Q Consensus 85 ~gvD~i~~ET-~~~~~E~~aa~~~~~~~~~~~pv~is~~--~~~~~~l~~G~~~~~~~~~~~~ 144 (247)
..+|+||+|| -|++.+++...+.+++..+++...-.++ |+=... .+-+.+......|..
T Consensus 378 PyaDliW~ET~~Pdl~~A~~Fa~~v~~~~P~k~LaYN~SPSFNW~~~-~~d~~~~~F~~~L~~ 439 (527)
T TIGR01346 378 PYADLIWMETSTPDLELAKKFAEGVKSKFPDQLLAYNLSPSFNWSAH-MEDDEIAKFIQELGD 439 (527)
T ss_pred ccccEEEecCCCCCHHHHHHHHHHHHHHCCCCeEEecCCCCcccccc-CCHHHHHHHHHHHHh
Confidence 6899999999 8999999999999998765554332222 211122 344555555555544
No 310
>PLN02892 isocitrate lyase
Probab=68.07 E-value=8.8 Score=37.62 Aligned_cols=33 Identities=33% Similarity=0.376 Sum_probs=28.6
Q ss_pred CCCCEEEEec-CCCHHHHHHHHHHHHhhCCCCcE
Q 025860 85 SAPDLIAFET-IPNKIEAQAYAELLEEENIKIPA 117 (247)
Q Consensus 85 ~gvD~i~~ET-~~~~~E~~aa~~~~~~~~~~~pv 117 (247)
.++|+||+|| -|++.+++...+.+++..+++..
T Consensus 399 PyaDliW~ET~~Pdl~~A~~Fa~~V~~~~P~k~L 432 (570)
T PLN02892 399 PYADLIWMETASPDLAEATKFAEGVKAKHPEIML 432 (570)
T ss_pred cccCEEEecCCCCCHHHHHHHHHHHHHhCCCCee
Confidence 7899999999 89999999999999987655543
No 311
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=67.64 E-value=83 Score=27.36 Aligned_cols=103 Identities=16% Similarity=0.119 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEec----------------CCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCccc
Q 025860 67 TVETLKDFHRRRVQVLVESAPDLIAFET----------------IPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVV 130 (247)
Q Consensus 67 s~~e~~~~~~~q~~~l~~~gvD~i~~ET----------------~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~ 130 (247)
+++++.+ .++.+ +.++|.|=+-. +.+++-+..+++.+++. ++||++-+....
T Consensus 78 ~~ee~~~----~a~~v-~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~--~~PVsvKiR~~~----- 145 (231)
T TIGR00736 78 DLEEAYD----VLLTI-AEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKEL--NKPIFVKIRGNC----- 145 (231)
T ss_pred CHHHHHH----HHHHH-hcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcC--CCcEEEEeCCCC-----
Confidence 5555544 33433 34788876553 23666677778887754 689887776422
Q ss_pred CCCcHHHHHHHHHhCCCCeEEEEcCCC---hhHHHHHHHHHHhhcC-CCEEEEeCCCC
Q 025860 131 SGDSLLECASIAESCKRVVSVGINCTP---PRFISGLILIIKKVTA-KPILIYPNSGE 184 (247)
Q Consensus 131 ~G~~~~~~~~~~~~~~~~~avG~NC~~---p~~~~~~l~~l~~~~~-~pl~vyPNaG~ 184 (247)
+.....+.++.+.+ .|+++|-|.+.- |..-...++.+++..+ .| +-.|.|.
T Consensus 146 ~~~~~~~~a~~l~~-aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ip--IIgNGgI 200 (231)
T TIGR00736 146 IPLDELIDALNLVD-DGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKI--IIGNNSI 200 (231)
T ss_pred CcchHHHHHHHHHH-cCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCc--EEEECCc
Confidence 23345577777776 699999998852 2234677888887763 66 4457664
No 312
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=67.37 E-value=26 Score=26.06 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=13.2
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHH
Q 025860 85 SAPDLIAFETIPNKIEAQAYAELLE 109 (247)
Q Consensus 85 ~gvD~i~~ET~~~~~E~~aa~~~~~ 109 (247)
..+|++++-|-++. -...+.++++
T Consensus 61 ~~~D~V~I~tp~~~-h~~~~~~~l~ 84 (120)
T PF01408_consen 61 EDVDAVIIATPPSS-HAEIAKKALE 84 (120)
T ss_dssp TTESEEEEESSGGG-HHHHHHHHHH
T ss_pred hcCCEEEEecCCcc-hHHHHHHHHH
Confidence 45677766665544 3345555554
No 313
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=67.34 E-value=97 Score=27.98 Aligned_cols=96 Identities=8% Similarity=-0.020 Sum_probs=61.8
Q ss_pred HHHHHhcCCCCEEEEecCC--------------CHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHH
Q 025860 78 RVQVLVESAPDLIAFETIP--------------NKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAE 143 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~--------------~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~ 143 (247)
-++.+.++||-.|-||-.. +.+|+..=++++++...+.+++|---. +..+ ...++++++..+
T Consensus 98 ~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART--Da~~--~~g~deAI~Ra~ 173 (292)
T PRK11320 98 TVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMART--DALA--VEGLDAAIERAQ 173 (292)
T ss_pred HHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEec--Cccc--ccCHHHHHHHHH
Confidence 5677888999999999753 556666666666664324455554432 2222 234888888775
Q ss_pred h--CCCCeEEEEcCC-ChhHHHHHHHHHHhhcCCCEEEEeC
Q 025860 144 S--CKRVVSVGINCT-PPRFISGLILIIKKVTAKPILIYPN 181 (247)
Q Consensus 144 ~--~~~~~avG~NC~-~p~~~~~~l~~l~~~~~~pl~vyPN 181 (247)
. ..|+|+|-+-+. .++.+..+.+. .+.|+.+-+-
T Consensus 174 aY~eAGAD~ifi~~~~~~~~i~~~~~~----~~~Pl~~n~~ 210 (292)
T PRK11320 174 AYVEAGADMIFPEAMTELEMYRRFADA----VKVPILANIT 210 (292)
T ss_pred HHHHcCCCEEEecCCCCHHHHHHHHHh----cCCCEEEEec
Confidence 2 258999988875 56666655554 4689865443
No 314
>PRK12999 pyruvate carboxylase; Reviewed
Probab=66.95 E-value=36 Score=36.56 Aligned_cols=86 Identities=21% Similarity=0.329 Sum_probs=54.3
Q ss_pred EEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEe-cC--CCHHHHHHHHHHHHhhCCCCc
Q 025860 40 LVAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFE-TI--PNKIEAQAYAELLEEENIKIP 116 (247)
Q Consensus 40 ~VaGsiGP~g~~l~~g~eY~g~y~~~~s~~e~~~~~~~q~~~l~~~gvD~i~~E-T~--~~~~E~~aa~~~~~~~~~~~p 116 (247)
.+-++++..|..+.+ +++.| +. ++|.+.++.+.+.|+|.|.|= |. -.+.++...++++|+.. ++|
T Consensus 669 ~~~~~i~ytg~~~d~---~~~~~----~~----~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~-~ip 736 (1146)
T PRK12999 669 IAEAAICYTGDILDP---ARAKY----DL----DYYVDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEV-DLP 736 (1146)
T ss_pred eEEEEEEEEecCCCC---CCCCC----CH----HHHHHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHc-CCe
Confidence 445667766654432 11222 22 567778888889999999776 33 34667888888888753 455
Q ss_pred EEEEEEEcCCCcccCCCcHHHHHHHHH
Q 025860 117 AWFSFNSKDGVNVVSGDSLLECASIAE 143 (247)
Q Consensus 117 v~is~~~~~~~~l~~G~~~~~~~~~~~ 143 (247)
+.|.+.++ .|..+...+..+.
T Consensus 737 --i~~H~Hnt----~Gla~an~laA~~ 757 (1146)
T PRK12999 737 --IHLHTHDT----SGNGLATYLAAAE 757 (1146)
T ss_pred --EEEEeCCC----CchHHHHHHHHHH
Confidence 46666553 4666666666554
No 315
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=66.89 E-value=1.2e+02 Score=28.70 Aligned_cols=89 Identities=10% Similarity=0.108 Sum_probs=52.4
Q ss_pred HHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEE-EEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCC
Q 025860 78 RVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFS-FNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT 156 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is-~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~ 156 (247)
.++.+.+.|+|.+.+=..++......+++.+++. +.++.+. +++ .++++.+ +.+.+ .+++.|++.-.
T Consensus 73 ~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~--G~~~~~g~~s~--------~t~~e~~-~~a~~-~GaD~I~~~pg 140 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLADDSTIEDAVRAARKY--GVRLMADLINV--------PDPVKRA-VELEE-LGVDYINVHVG 140 (430)
T ss_pred HHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHc--CCEEEEEecCC--------CCHHHHH-HHHHh-cCCCEEEEEec
Confidence 6777888999999865444444456677777876 4666653 221 2234433 33444 47888877643
Q ss_pred C-----hhHHHHHHHHHHhhcCCCEEE
Q 025860 157 P-----PRFISGLILIIKKVTAKPILI 178 (247)
Q Consensus 157 ~-----p~~~~~~l~~l~~~~~~pl~v 178 (247)
. +......|+.++...+.|+.+
T Consensus 141 ~~~~~~~~~~~~~l~~l~~~~~iPI~a 167 (430)
T PRK07028 141 IDQQMLGKDPLELLKEVSEEVSIPIAV 167 (430)
T ss_pred cchhhcCCChHHHHHHHHhhCCCcEEE
Confidence 1 122235666666655677654
No 316
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=66.80 E-value=22 Score=30.84 Aligned_cols=39 Identities=21% Similarity=0.254 Sum_probs=31.7
Q ss_pred HHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEE
Q 025860 78 RVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFS 120 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is 120 (247)
.++.|.+.|+|+|++..|.=-.+.|..++-. . ++||+.|
T Consensus 170 Aa~~L~~~gadlIvLDCmGYt~~~r~~~~~~--~--g~PVlLs 208 (221)
T PF07302_consen 170 AARELAEQGADLIVLDCMGYTQEMRDIVQRA--L--GKPVLLS 208 (221)
T ss_pred HHHHHHhcCCCEEEEECCCCCHHHHHHHHHH--h--CCCEEeH
Confidence 7777888999999999999999988766532 2 6899865
No 317
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=66.60 E-value=91 Score=27.41 Aligned_cols=98 Identities=15% Similarity=0.190 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEecC---------CCHHH---HHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCc
Q 025860 67 TVETLKDFHRRRVQVLVESAPDLIAFETI---------PNKIE---AQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDS 134 (247)
Q Consensus 67 s~~e~~~~~~~q~~~l~~~gvD~i~~ET~---------~~~~E---~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~ 134 (247)
+.+++.+ +++.+++.|+|+|=+-.. +.-.| ++.+++.+++.. +.| +|+... .
T Consensus 21 ~~~~~~~----~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~-~~p--lsiDT~---------~ 84 (257)
T TIGR01496 21 SVDKAVA----HAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQP-DVP--ISVDTY---------R 84 (257)
T ss_pred CHHHHHH----HHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCe--EEEeCC---------C
Confidence 6677666 566667799999977422 22235 666677776542 345 566432 1
Q ss_pred HHHHHHHHHhCCCCeEEEEcCCChhHHHHHHHHHHhhcCCCEEEEeCCCCc
Q 025860 135 LLECASIAESCKRVVSVGINCTPPRFISGLILIIKKVTAKPILIYPNSGEF 185 (247)
Q Consensus 135 ~~~~~~~~~~~~~~~avG~NC~~p~~~~~~l~~l~~~~~~pl~vyPNaG~~ 185 (247)
.++++...+. |++. ||-.........++.+++ .+.|+++.++.|.+
T Consensus 85 -~~vi~~al~~-G~~i--INsis~~~~~~~~~l~~~-~~~~vV~m~~~g~p 130 (257)
T TIGR01496 85 -AEVARAALEA-GADI--INDVSGGQDPAMLEVAAE-YGVPLVLMHMRGTP 130 (257)
T ss_pred -HHHHHHHHHc-CCCE--EEECCCCCCchhHHHHHH-cCCcEEEEeCCCCC
Confidence 2233333232 5542 554321111223333333 47899999987753
No 318
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=66.55 E-value=1.1e+02 Score=28.39 Aligned_cols=79 Identities=4% Similarity=-0.136 Sum_probs=45.3
Q ss_pred HhcCCCCEEEEecCC-CHHH------HHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCC-------cHHHHHHHHHhCCC
Q 025860 82 LVESAPDLIAFETIP-NKIE------AQAYAELLEEENIKIPAWFSFNSKDGVNVVSGD-------SLLECASIAESCKR 147 (247)
Q Consensus 82 l~~~gvD~i~~ET~~-~~~E------~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~-------~~~~~~~~~~~~~~ 147 (247)
.++.|+|.+.+=.++ +-.| +..+.+-+++. ++|+++-..-. +..+.+.. -+.-+++...+ .|
T Consensus 155 AlrLGAdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~--GlPlv~~~YpR-G~~i~~~~d~~~~~d~Ia~AaRiaaE-LG 230 (348)
T PRK09250 155 ALRLGAVAVGATIYFGSEESRRQIEEISEAFEEAHEL--GLATVLWSYLR-NSAFKKDGDYHTAADLTGQANHLAAT-IG 230 (348)
T ss_pred HHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHh--CCCEEEEeccc-CcccCCcccccccHHHHHHHHHHHHH-Hc
Confidence 445899999876554 3333 33333444444 58988754333 33332322 24445554445 79
Q ss_pred CeEEEEcCC-ChhHHHHH
Q 025860 148 VVSVGINCT-PPRFISGL 164 (247)
Q Consensus 148 ~~avG~NC~-~p~~~~~~ 164 (247)
+|.|=++-+ +++.+.++
T Consensus 231 ADIVKv~yp~~~~~f~~v 248 (348)
T PRK09250 231 ADIIKQKLPTNNGGYKAI 248 (348)
T ss_pred CCEEEecCCCChhhHHHh
Confidence 999999987 45554444
No 319
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=66.52 E-value=75 Score=30.72 Aligned_cols=66 Identities=9% Similarity=0.013 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCCCCEEEEec-CCCHHHHHHHHHHHHhhCCCCcEEE-EEEEcCCCcccCCCcHHHHHHHHHhCCCCeEE
Q 025860 74 FHRRRVQVLVESAPDLIAFET-IPNKIEAQAYAELLEEENIKIPAWF-SFNSKDGVNVVSGDSLLECASIAESCKRVVSV 151 (247)
Q Consensus 74 ~~~~q~~~l~~~gvD~i~~ET-~~~~~E~~aa~~~~~~~~~~~pv~i-s~~~~~~~~l~~G~~~~~~~~~~~~~~~~~av 151 (247)
...++++.|+++|+|.|++-+ -.+-.-+...++.+|+..++.++++ .+ .+.+.+.. +.+ .|+|+|
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv-----------~t~~~a~~-l~~-aGad~v 293 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNV-----------VTAEGTRD-LVE-AGADIV 293 (479)
T ss_pred hHHHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeecc-----------CCHHHHHH-HHH-cCCCEE
Confidence 456789999999999999984 3443444555666666555677775 22 13344444 434 478876
Q ss_pred E
Q 025860 152 G 152 (247)
Q Consensus 152 G 152 (247)
+
T Consensus 294 ~ 294 (479)
T PRK07807 294 K 294 (479)
T ss_pred E
Confidence 5
No 320
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=66.50 E-value=1e+02 Score=27.84 Aligned_cols=143 Identities=14% Similarity=0.149 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhcCCCCEE-EEecCC-----CHHHHHHH-----HHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHH
Q 025860 71 LKDFHRRRVQVLVESAPDLI-AFETIP-----NKIEAQAY-----AELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECA 139 (247)
Q Consensus 71 ~~~~~~~q~~~l~~~gvD~i-~~ET~~-----~~~E~~aa-----~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~ 139 (247)
+.+...+.++.++++|+|+| +++... +.++.+.. .+.++... ..++++-+ | |.. ...+
T Consensus 178 i~~~~~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~-~~~~ilH~-c--------G~~-~~~l 246 (339)
T PRK06252 178 VTDFCIEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVK-GLPTILHI-C--------GDL-TSIL 246 (339)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhc-cCCcEEEE-C--------CCc-hHHH
Confidence 33445556677778999985 566532 34443322 12333332 11444433 2 211 2345
Q ss_pred HHHHhCCCCeEEEEcCCChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEE
Q 025860 140 SIAESCKRVVSVGINCTPPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLV 219 (247)
Q Consensus 140 ~~~~~~~~~~avG~NC~~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iI 219 (247)
..+.+ .+++++.+--. ..+..+.+. .+.-+.++-|--.. ..... -++++..+.+++.++.|..|+
T Consensus 247 ~~~~~-~g~d~~~~d~~--~dl~~~~~~----~g~~~~i~Gnidp~------~~l~~--gt~eeI~~~v~~~l~~g~~Il 311 (339)
T PRK06252 247 EEMAD-CGFDGISIDEK--VDVKTAKEN----VGDRAALIGNVSTS------FTLLN--GTPEKVKAEAKKCLEDGVDIL 311 (339)
T ss_pred HHHHh-cCCCeeccCCC--CCHHHHHHH----hCCCeEEEeccCcH------HHhcC--CCHHHHHHHHHHHHHcCCCEE
Confidence 55555 46776554322 122223222 22235566555210 01111 358889999999999887788
Q ss_pred eecCC----CChHHHHHHHHHhhC
Q 025860 220 GGCCR----TTPNTIKGIYRTLSN 239 (247)
Q Consensus 220 GGCCG----t~P~hI~al~~~l~~ 239 (247)
.--|| |-+++++++.++++.
T Consensus 312 ~~gcgi~~~tp~enl~a~v~a~~~ 335 (339)
T PRK06252 312 APGCGIAPKTPLENIKAMVEARKE 335 (339)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHH
Confidence 87777 568999999888764
No 321
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=66.40 E-value=1.1e+02 Score=28.37 Aligned_cols=113 Identities=14% Similarity=0.084 Sum_probs=65.0
Q ss_pred CCCHHH---HHHHHHHHHHHHhcCCCCEEEEecCC---------------------CH-HHHHH---HHHHHHhh-CCCC
Q 025860 65 AITVET---LKDFHRRRVQVLVESAPDLIAFETIP---------------------NK-IEAQA---YAELLEEE-NIKI 115 (247)
Q Consensus 65 ~~s~~e---~~~~~~~q~~~l~~~gvD~i~~ET~~---------------------~~-~E~~a---a~~~~~~~-~~~~ 115 (247)
.+|.+| +.+.|.+-++.+.++|.|.+=+=.-. ++ .-++. +++++|+. +.+.
T Consensus 133 ~mt~~eI~~ii~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~ 212 (361)
T cd04747 133 EMTEADIDDVIAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDF 212 (361)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 356554 55678877888888999998443211 11 12333 44455553 4467
Q ss_pred cEEEEEEEcCCCc--ccCCCcHHHHHHH---HHhCCCCeEEEEcCC---ChhH---HHHHHHHHHhhcCCCEEE
Q 025860 116 PAWFSFNSKDGVN--VVSGDSLLECASI---AESCKRVVSVGINCT---PPRF---ISGLILIIKKVTAKPILI 178 (247)
Q Consensus 116 pv~is~~~~~~~~--l~~G~~~~~~~~~---~~~~~~~~avG~NC~---~p~~---~~~~l~~l~~~~~~pl~v 178 (247)
|+.+-++..+... ...|.++++.+.. +.+ .+++.|-+.|. .|.. -..+.+.+++..+.|+++
T Consensus 213 ~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~-~gvd~i~vs~g~~~~~~~~~~~~~~~~~~k~~~~~pv~~ 285 (361)
T cd04747 213 PIILRFSQWKQQDYTARLADTPDELEALLAPLVD-AGVDIFHCSTRRFWEPEFEGSELNLAGWTKKLTGLPTIT 285 (361)
T ss_pred eEEEEECcccccccccCCCCCHHHHHHHHHHHHH-cCCCEEEecCCCccCCCcCccchhHHHHHHHHcCCCEEE
Confidence 8888777422111 1236777776555 444 57888777553 2211 124455667777888665
No 322
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=66.09 E-value=14 Score=33.05 Aligned_cols=44 Identities=20% Similarity=0.281 Sum_probs=34.1
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEecCCCH
Q 025860 52 LADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNK 98 (247)
Q Consensus 52 l~~g~eY~g~y~~~~s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~ 98 (247)
-.+|--|-+.+ .+.+....+.++.+-.|...|+|.|+||++.+.
T Consensus 242 PS~G~~~G~a~---pS~anq~~~~~~i~~~~~~~G~d~fvfeAFdd~ 285 (305)
T COG5309 242 PSDGRTYGSAV---PSVANQKIAVQEILNALRSCGYDVFVFEAFDDD 285 (305)
T ss_pred CCCCCccCCcC---CChhHHHHHHHHHHhhhhccCccEEEeeecccc
Confidence 34555554554 377888889999999898999999999998764
No 323
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=66.05 E-value=17 Score=31.01 Aligned_cols=139 Identities=18% Similarity=0.213 Sum_probs=75.0
Q ss_pred HHHHHHHHhcCCCCEEEEecCC--CHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEE-
Q 025860 75 HRRRVQVLVESAPDLIAFETIP--NKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSV- 151 (247)
Q Consensus 75 ~~~q~~~l~~~gvD~i~~ET~~--~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~av- 151 (247)
....++.+.+.|+|.|++=.-. +...+...++.+|+.. ++|+++ | ..+.. + +. .++|++
T Consensus 13 ~~~ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~-~lPvil-f--p~~~~---~-----i~------~~aD~~~ 74 (205)
T TIGR01769 13 IEKIAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKIT-NLPVIL-F--PGNVN---G-----LS------RYADAVF 74 (205)
T ss_pred HHHHHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhc-CCCEEE-E--CCCcc---c-----cC------cCCCEEE
Confidence 3446667888999999997333 5567777788888854 799998 4 22111 0 11 123433
Q ss_pred ---EEcCCChhHHHHHH-H---HHHhhcC--CC---EEEEeCCCCcccccccccccC----CCCChHHHHHHHHHHHHcC
Q 025860 152 ---GINCTPPRFISGLI-L---IIKKVTA--KP---ILIYPNSGEFYDADRKEWVQN----TGVSDEDFVSYVSKWCEVG 215 (247)
Q Consensus 152 ---G~NC~~p~~~~~~l-~---~l~~~~~--~p---l~vyPNaG~~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~G 215 (247)
-+|-..|+.+...- + .+++... .| +++-|.+ . -.|+.+ .+.+|++-..++.-.-..|
T Consensus 75 ~~sllns~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~-~------v~~v~~a~~ip~~~~e~~~~~a~aa~~~G 147 (205)
T TIGR01769 75 FMSLLNSADTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGG-A------VGYVGKAREIPYNKPEIAAAYCLAAKYFG 147 (205)
T ss_pred EEEeecCCCcchhhhHHHHHHHHHHHcCCcccceEEEEECCCC-c------eeeecCcccCCCCCHHHHHHHHHHHHHcC
Confidence 45666776643331 1 1222211 22 3444433 1 112221 1245666555555444567
Q ss_pred CeEE--eecC--C--CChHHHHHHHHHhh
Q 025860 216 ASLV--GGCC--R--TTPNTIKGIYRTLS 238 (247)
Q Consensus 216 ~~iI--GGCC--G--t~P~hI~al~~~l~ 238 (247)
+++| =-+- + .+++.|+.+++.++
T Consensus 148 ~~~i~Le~~sGa~~~v~~e~i~~Vk~~~~ 176 (205)
T TIGR01769 148 MKWVYLEAGSGASYPVNPETISLVKKASG 176 (205)
T ss_pred CCEEEEEcCCCCCCCCCHHHHHHHHHhhC
Confidence 6643 2222 3 56888988887763
No 324
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=65.59 E-value=1.1e+02 Score=28.21 Aligned_cols=42 Identities=12% Similarity=0.114 Sum_probs=33.3
Q ss_pred CChHHHHHHHHHHHHcCCeEEeecC--C-CChHHHHHHHHHhhCC
Q 025860 199 VSDEDFVSYVSKWCEVGASLVGGCC--R-TTPNTIKGIYRTLSNR 240 (247)
Q Consensus 199 ~~~~~~~~~~~~~~~~G~~iIGGCC--G-t~P~hI~al~~~l~~~ 240 (247)
.+++.+.+.++++.+.|+..|.=|= | .+|..+..+-+.+...
T Consensus 194 ~~~~~l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~ 238 (347)
T PLN02746 194 VPPSKVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAV 238 (347)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHh
Confidence 4588899999999999999987432 2 3899999988887654
No 325
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=65.52 E-value=97 Score=27.34 Aligned_cols=43 Identities=21% Similarity=0.197 Sum_probs=32.6
Q ss_pred ChHHHHHHHHHHHHcCCeEEee--cCC-CChHHHHHHHHHhhCCCC
Q 025860 200 SDEDFVSYVSKWCEVGASLVGG--CCR-TTPNTIKGIYRTLSNRSS 242 (247)
Q Consensus 200 ~~~~~~~~~~~~~~~G~~iIGG--CCG-t~P~hI~al~~~l~~~~~ 242 (247)
+++.+.+.++++.+.|+..|.= ..| .+|+.++.+-+.+++.-|
T Consensus 149 ~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~ 194 (273)
T cd07941 149 NPEYALATLKAAAEAGADWLVLCDTNGGTLPHEIAEIVKEVRERLP 194 (273)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhCC
Confidence 5777889999999999988752 233 489999988877765433
No 326
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=65.24 E-value=44 Score=28.47 Aligned_cols=65 Identities=9% Similarity=0.012 Sum_probs=44.7
Q ss_pred EEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHH---HHhCCCCeEEEEcCC
Q 025860 91 AFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASI---AESCKRVVSVGINCT 156 (247)
Q Consensus 91 ~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~---~~~~~~~~avG~NC~ 156 (247)
+..|+.+...++.+-+.+.+.+..++||+.+.+.. +.-+.|.+..++.+. +....++...|+-|-
T Consensus 95 ~~~~I~s~~~~~~l~~~a~~~g~~~~v~l~id~~~-Gm~R~Gi~~~~~~~~~~~i~~~~~l~l~Gl~tH 162 (224)
T cd06824 95 WVHSVDRLKIAKRLNDQRPAGLPPLNVCIQVNISG-EDSKSGVAPEDAAELAEAISQLPNLRLRGLMAI 162 (224)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCCCcEEEEEEcCC-CCCCCCCCHHHHHHHHHHHhcCCCCcEEEEEEe
Confidence 45888999998888877776554567888887754 333568776554443 344457788888884
No 327
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=65.08 E-value=97 Score=27.20 Aligned_cols=91 Identities=13% Similarity=0.078 Sum_probs=47.0
Q ss_pred HHHHHHHhcCCCCEEEE----------------------ecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCC
Q 025860 76 RRRVQVLVESAPDLIAF----------------------ETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGD 133 (247)
Q Consensus 76 ~~q~~~l~~~gvD~i~~----------------------ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~ 133 (247)
.+.++.|.++|||+|=+ +-=.+++..-..++.+++...+.|+. -|+..+ .....
T Consensus 27 ~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv-~m~Y~N-pi~~~-- 102 (256)
T TIGR00262 27 LEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIG-LLTYYN-LIFRK-- 102 (256)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE-EEEecc-HHhhh--
Confidence 33677888899999833 22223344455556666542368976 444322 11111
Q ss_pred cHHHHHHHHHhCCCCeEEEEcCCChhHHHHHHHHHHhh
Q 025860 134 SLLECASIAESCKRVVSVGINCTPPRFISGLILIIKKV 171 (247)
Q Consensus 134 ~~~~~~~~~~~~~~~~avG~NC~~p~~~~~~l~~l~~~ 171 (247)
.+++.++.+.+ .|++++-+.=-.++....+++.+++.
T Consensus 103 G~e~f~~~~~~-aGvdgviipDlp~ee~~~~~~~~~~~ 139 (256)
T TIGR00262 103 GVEEFYAKCKE-VGVDGVLVADLPLEESGDLVEAAKKH 139 (256)
T ss_pred hHHHHHHHHHH-cCCCEEEECCCChHHHHHHHHHHHHC
Confidence 22444555544 35555555544444555555555443
No 328
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=64.93 E-value=62 Score=27.42 Aligned_cols=82 Identities=17% Similarity=0.122 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEc
Q 025860 75 HRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGIN 154 (247)
Q Consensus 75 ~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~N 154 (247)
+++.++.|.+.|+|.|++-. + .+++++++.++++|+++++.+.- .=...++.+.+ .|+..+-+
T Consensus 4 ~~~~l~~l~~~g~dgi~v~~---~----g~~~~~k~~~~~~~i~~~~~~nv--------~N~~s~~~~~~-~G~~~i~l- 66 (233)
T PF01136_consen 4 LEKYLDKLKELGVDGILVSN---P----GLLELLKELGPDLKIIADYSLNV--------FNSESARFLKE-LGASRITL- 66 (233)
T ss_pred HHHHHHHHHhCCCCEEEEcC---H----HHHHHHHHhCCCCcEEEecCccC--------CCHHHHHHHHH-cCCCEEEE-
Confidence 45577778899999998654 3 34456777766899999986532 11345666655 35443333
Q ss_pred CCChhHHHHHHHHHHhhc-CCC
Q 025860 155 CTPPRFISGLILIIKKVT-AKP 175 (247)
Q Consensus 155 C~~p~~~~~~l~~l~~~~-~~p 175 (247)
+|+.-.+-|+.|.+.. ..|
T Consensus 67 --s~EL~~~ei~~i~~~~~~~~ 86 (233)
T PF01136_consen 67 --SPELSLEEIKEIAENSPGVP 86 (233)
T ss_pred --CccCCHHHHHHHHHhCCCCe
Confidence 4554455555555555 344
No 329
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=64.91 E-value=89 Score=26.67 Aligned_cols=105 Identities=13% Similarity=0.186 Sum_probs=60.0
Q ss_pred HHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcC--
Q 025860 78 RVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINC-- 155 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC-- 155 (247)
|++.++++|+|||+ -|.+. ..+++.+++. ++|++ +.-.++.|+...++ .|++.|=+-=
T Consensus 72 ~a~~a~~aGA~Fiv---sP~~~--~~v~~~~~~~--~i~~i-----------PG~~TptEi~~A~~--~Ga~~vKlFPA~ 131 (204)
T TIGR01182 72 QLRQAVDAGAQFIV---SPGLT--PELAKHAQDH--GIPII-----------PGVATPSEIMLALE--LGITALKLFPAE 131 (204)
T ss_pred HHHHHHHcCCCEEE---CCCCC--HHHHHHHHHc--CCcEE-----------CCCCCHHHHHHHHH--CCCCEEEECCch
Confidence 55556678888885 23332 3455566665 46666 22367888888765 3666655533
Q ss_pred -C-ChhHHHHHHHHHHhh-cCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEEeecCCCCh
Q 025860 156 -T-PPRFISGLILIIKKV-TAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCRTTP 227 (247)
Q Consensus 156 -~-~p~~~~~~l~~l~~~-~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iIGGCCGt~P 227 (247)
. +|.++ +.++.. .+.| ++|-+| +++ +.+.+|+++|+..+|+--.-.+
T Consensus 132 ~~GG~~yi----kal~~plp~i~--~~ptGG---------------V~~----~N~~~~l~aGa~~vg~Gs~L~~ 181 (204)
T TIGR01182 132 VSGGVKML----KALAGPFPQVR--FCPTGG---------------INL----ANVRDYLAAPNVACGGGSWLVP 181 (204)
T ss_pred hcCCHHHH----HHHhccCCCCc--EEecCC---------------CCH----HHHHHHHhCCCEEEEEChhhcC
Confidence 2 25543 333321 1223 234443 344 5667799999998887666554
No 330
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=64.77 E-value=21 Score=31.01 Aligned_cols=45 Identities=7% Similarity=0.179 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCC---CHHHHHHHHHHHHhhCCCCcEEEE
Q 025860 73 DFHRRRVQVLVESAPDLIAFETIP---NKIEAQAYAELLEEENIKIPAWFS 120 (247)
Q Consensus 73 ~~~~~q~~~l~~~gvD~i~~ET~~---~~~E~~aa~~~~~~~~~~~pv~is 120 (247)
..|.+++..++++|.|+++ |... +.++.+.+++++++. +.++++.
T Consensus 48 ~~H~e~a~~aL~aGkhVl~-~s~gAlad~e~~~~l~~aA~~~--g~~l~i~ 95 (229)
T TIGR03855 48 EAVKEYAEKILKNGKDLLI-MSVGALADRELRERLREVARSS--GRKVYIP 95 (229)
T ss_pred HHHHHHHHHHHHCCCCEEE-ECCcccCCHHHHHHHHHHHHhc--CCEEEEC
Confidence 5688899999999999998 6653 667888888888876 4666654
No 331
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=64.74 E-value=75 Score=29.13 Aligned_cols=142 Identities=15% Similarity=0.146 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCEEEEec--CCC-HHH-HHHHHHHHHhh--CCCCcEEEEEEEcCCCcc------cC-C---
Q 025860 69 ETLKDFHRRRVQVLVESAPDLIAFET--IPN-KIE-AQAYAELLEEE--NIKIPAWFSFNSKDGVNV------VS-G--- 132 (247)
Q Consensus 69 ~e~~~~~~~q~~~l~~~gvD~i~~ET--~~~-~~E-~~aa~~~~~~~--~~~~pv~is~~~~~~~~l------~~-G--- 132 (247)
.++.+.+++-++.|.++|++.|-|.- ++. ..+ +...+++++.. +.+.++++.+++- +... .. |
T Consensus 152 ~dlA~al~~Ei~~L~~aG~~~IQiDeP~l~~~~~~~~~~~v~~~n~~~~g~~~~v~~HvC~G-~~~~~~~~~~~~~~~~~ 230 (339)
T PRK09121 152 WEFAKILNQEAKELEAAGVDIIQFDEPAFNVFFDEVNDWGVAALERAIEGLKCETAVHICYG-YGIKANTDWKKTLGSEW 230 (339)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEecccHHhhhhHHHHHHHHHHHHHHHcCCCCceEEEEeCC-CCCCCcccccccccccc
Confidence 55788999999999999999886652 221 122 45555666553 2235555555433 3210 00 1
Q ss_pred CcHHHHHHHHHhCCCCeEEEEcCCChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHH
Q 025860 133 DSLLECASIAESCKRVVSVGINCTPPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWC 212 (247)
Q Consensus 133 ~~~~~~~~~~~~~~~~~avG~NC~~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (247)
.+...++..+.+ .+++.+.+-+..+..-...|+.++ +..|+ + |. .|... ..-.++++..+-..+..
T Consensus 231 g~y~~i~~~l~~-~~vd~~~lE~~~~r~~~~~l~~~~---~~~v~--l--Gv-vd~k~-----~~lE~~e~I~~rI~~a~ 296 (339)
T PRK09121 231 RQYEEAFPKLQK-SNIDIISLECHNSRVPMDLLELIR---GKKVM--V--GA-IDVAS-----DTIETPEEVADTLRKAL 296 (339)
T ss_pred ccHHHHHHHHHh-CCCCEEEEEecCCCCCcHHHHhcc---cCeEE--e--ee-EeCCC-----CCCCCHHHHHHHHHHHH
Confidence 355677787866 689999999865442223344442 22221 1 22 22211 11145777777766665
Q ss_pred Hc-C--CeEEeecCCC
Q 025860 213 EV-G--ASLVGGCCRT 225 (247)
Q Consensus 213 ~~-G--~~iIGGCCGt 225 (247)
+. + =-++.=-||-
T Consensus 297 ~~v~~~~l~lspdCGf 312 (339)
T PRK09121 297 QFVDADKLYPCTNCGM 312 (339)
T ss_pred HhCCHHHEEECCCCCC
Confidence 52 2 3346667873
No 332
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=64.73 E-value=72 Score=28.29 Aligned_cols=93 Identities=18% Similarity=0.149 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeE-EEE
Q 025860 75 HRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVS-VGI 153 (247)
Q Consensus 75 ~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~a-vG~ 153 (247)
...-++.+.++|||.+++=-+| ++|.....+.+++.+ +..+.-++ ..++-+.+-.......+..- +..
T Consensus 104 ~e~F~~~~~~aGvdGlIipDLP-~ee~~~~~~~~~~~g--l~~I~lv~--------p~t~~~Ri~~i~~~a~gFiY~vs~ 172 (259)
T PF00290_consen 104 IERFFKEAKEAGVDGLIIPDLP-PEESEELREAAKKHG--LDLIPLVA--------PTTPEERIKKIAKQASGFIYLVSR 172 (259)
T ss_dssp HHHHHHHHHHHTEEEEEETTSB-GGGHHHHHHHHHHTT---EEEEEEE--------TTS-HHHHHHHHHH-SSEEEEESS
T ss_pred hHHHHHHHHHcCCCEEEEcCCC-hHHHHHHHHHHHHcC--CeEEEEEC--------CCCCHHHHHHHHHhCCcEEEeecc
Confidence 3334555667899999988877 578888888888764 54443332 22333333332333334332 223
Q ss_pred cC-CC-----hhHHHHHHHHHHhhcCCCEEE
Q 025860 154 NC-TP-----PRFISGLILIIKKVTAKPILI 178 (247)
Q Consensus 154 NC-~~-----p~~~~~~l~~l~~~~~~pl~v 178 (247)
+- |+ +..+...++.+++.++.|+.+
T Consensus 173 ~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~v 203 (259)
T PF00290_consen 173 MGVTGSRTELPDELKEFIKRIKKHTDLPVAV 203 (259)
T ss_dssp SSSSSTTSSCHHHHHHHHHHHHHTTSS-EEE
T ss_pred CCCCCCcccchHHHHHHHHHHHhhcCcceEE
Confidence 33 22 467888999999999999754
No 333
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=64.38 E-value=98 Score=28.36 Aligned_cols=52 Identities=21% Similarity=0.201 Sum_probs=32.7
Q ss_pred HHHHHHHHH----H---HHHh-cCCCCEEEEec---CCC-----HHHHHHHHHHHHhhCCCCcEEEEEE
Q 025860 70 TLKDFHRRR----V---QVLV-ESAPDLIAFET---IPN-----KIEAQAYAELLEEENIKIPAWFSFN 122 (247)
Q Consensus 70 e~~~~~~~q----~---~~l~-~~gvD~i~~ET---~~~-----~~E~~aa~~~~~~~~~~~pv~is~~ 122 (247)
++.+.|... . ..-. +.|+|+|.+-. -++ ..|+..+++.+.+.- ++|+.|--+
T Consensus 65 ~i~~~~~~v~~~p~~~Ak~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eav-d~PL~Id~s 132 (319)
T PRK04452 65 AVKEPFGDVMNDPAAWAKKCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAV-DVPLIIGGS 132 (319)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhC-CCCEEEecC
Confidence 566666654 2 2223 58999999884 332 345777777776653 789875544
No 334
>PRK08508 biotin synthase; Provisional
Probab=64.14 E-value=1e+02 Score=27.23 Aligned_cols=74 Identities=9% Similarity=0.010 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEe----cCC--CHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHH
Q 025860 66 ITVETLKDFHRRRVQVLVESAPDLIAFE----TIP--NKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECA 139 (247)
Q Consensus 66 ~s~~e~~~~~~~q~~~l~~~gvD~i~~E----T~~--~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~ 139 (247)
.+.|++.+ .++...+.|++-|.+= +++ .++-+..+++.+++..+++.++.|. |..-.+.+
T Consensus 40 ~s~eeI~~----~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s~----------G~~~~e~l 105 (279)
T PRK08508 40 KDIEQIVQ----EAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACN----------GTASVEQL 105 (279)
T ss_pred CCHHHHHH----HHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEecC----------CCCCHHHH
Confidence 57788887 4444455688777663 233 2333445555666543344454442 33334555
Q ss_pred HHHHhCCCCeEEEEc
Q 025860 140 SIAESCKRVVSVGIN 154 (247)
Q Consensus 140 ~~~~~~~~~~avG~N 154 (247)
+.+.+ .|++.+.+|
T Consensus 106 ~~Lk~-aGld~~~~~ 119 (279)
T PRK08508 106 KELKK-AGIFSYNHN 119 (279)
T ss_pred HHHHH-cCCCEEccc
Confidence 55554 355555544
No 335
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=63.99 E-value=1.4e+02 Score=28.47 Aligned_cols=152 Identities=10% Similarity=0.011 Sum_probs=79.9
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEE-----EE-ecCCCHH-HHHHHHHHHHhhC--CCCcEEEEEEEcCCCcccCCCcHH
Q 025860 66 ITVETLKDFHRRRVQVLVESAPDLI-----AF-ETIPNKI-EAQAYAELLEEEN--IKIPAWFSFNSKDGVNVVSGDSLL 136 (247)
Q Consensus 66 ~s~~e~~~~~~~q~~~l~~~gvD~i-----~~-ET~~~~~-E~~aa~~~~~~~~--~~~pv~is~~~~~~~~l~~G~~~~ 136 (247)
+|+++..+ ++..+...|+|+| +. ..+.-++ -+++..+++++.. .+.+.+-.+.+ +|. ..
T Consensus 144 lsp~~~a~----~~y~~~~GGvD~iKDDE~l~~q~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~Ni-------T~~-~~ 211 (412)
T cd08213 144 LSPEEHAE----VAYEALVGGVDLVKDDENLTSQPFNRFEERAKESLKARDKAEAETGERKAYLANI-------TAP-VR 211 (412)
T ss_pred CCHHHHHH----HHHHHHhcCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEe-------cCC-HH
Confidence 47777655 5555667999998 22 2333333 3455555555421 13455545544 232 34
Q ss_pred HHHH---HHHhCCCCeEEEEcCC--ChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHH
Q 025860 137 ECAS---IAESCKRVVSVGINCT--PPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKW 211 (247)
Q Consensus 137 ~~~~---~~~~~~~~~avG~NC~--~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 211 (247)
+..+ .+.+ .|..++-+|.. +... ...|.......+.||.+.|+.--.+... +...++..-|.+ -|
T Consensus 212 em~~ra~~a~e-~G~~~~mv~~~~~G~~~-l~~l~~~~~~~~l~ihaHra~~ga~~r~-----~~~Gis~~~l~k---l~ 281 (412)
T cd08213 212 EMERRAELVAD-LGGKYVMIDVVVAGWSA-LQYLRDLAEDYGLAIHAHRAMHAAFTRN-----PRHGISMLVLAK---LY 281 (412)
T ss_pred HHHHHHHHHHH-hCCCeEEeeccccChHH-HHHHHHhccccCeEEEECCCcceecccC-----CcCcCcHHHHHH---HH
Confidence 4443 3444 57788888884 3332 2333332223578999999874322211 111234433333 34
Q ss_pred HHcCCeE--E---eecCCCChHHHHHHHHHhhC
Q 025860 212 CEVGASL--V---GGCCRTTPNTIKGIYRTLSN 239 (247)
Q Consensus 212 ~~~G~~i--I---GGCCGt~P~hI~al~~~l~~ 239 (247)
+=+|+.. + +|==..+++....+++.+..
T Consensus 282 RLaGaD~ih~~t~~Gk~~~~~~~~~~~~~~l~~ 314 (412)
T cd08213 282 RLIGVDQLHIGTAVGKMEGDKEEVLRIADILRE 314 (412)
T ss_pred HHcCCCccccCCccCCcCCCHHHHHHHHHHHHh
Confidence 4456543 3 44444578888888887764
No 336
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=63.98 E-value=65 Score=30.64 Aligned_cols=67 Identities=9% Similarity=0.105 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEecCCC---HH-HHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHH
Q 025860 66 ITVETLKDFHRRRVQVLVESAPDLIAFETIPN---KI-EAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASI 141 (247)
Q Consensus 66 ~s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~---~~-E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~ 141 (247)
.+.+++++.++- .+.+..|..|++--+.- -+ =++.+++++++.+.++|+++-+ .|+..++..+.
T Consensus 328 a~~~~v~~a~~i---i~~d~~vk~iliNIfGGI~~cd~iA~gii~a~~~~~~~~pivvRl---------~Gtn~~~g~~~ 395 (422)
T PLN00124 328 ASEQQVVEAFKI---LTSDDKVKAILVNIFGGIMKCDVIASGIVNAAKQVGLKVPLVVRL---------EGTNVDQGKRI 395 (422)
T ss_pred CCHHHHHHHHHH---HhcCCCCcEEEEEecCCccchHHHHHHHHHHHHhcCCCCcEEEEc---------CCCCHHHHHHH
Confidence 577888887762 25578899998754432 22 2456677888877789999866 69999999888
Q ss_pred HHh
Q 025860 142 AES 144 (247)
Q Consensus 142 ~~~ 144 (247)
+.+
T Consensus 396 l~~ 398 (422)
T PLN00124 396 LKE 398 (422)
T ss_pred HHh
Confidence 876
No 337
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=63.83 E-value=1.1e+02 Score=27.48 Aligned_cols=107 Identities=15% Similarity=0.139 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEec----------------CCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCccc
Q 025860 67 TVETLKDFHRRRVQVLVESAPDLIAFET----------------IPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVV 130 (247)
Q Consensus 67 s~~e~~~~~~~q~~~l~~~gvD~i~~ET----------------~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~ 130 (247)
+.+++.+ -++.+.++|+|.|=+-. +.+.+-+..+++.+++.- +.|+.+-+... ...
T Consensus 73 ~~~~~~~----aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~-~~pv~vKir~g---~~~ 144 (319)
T TIGR00737 73 DPDTMAE----AAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAV-DIPVTVKIRIG---WDD 144 (319)
T ss_pred CHHHHHH----HHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhc-CCCEEEEEEcc---cCC
Confidence 4455555 44455668899884431 112344556666776643 57887776531 111
Q ss_pred CCCcHHHHHHHHHhCCCCeEEEEcCCC------hhHHHHHHHHHHhhcCCCEEEEeCCCC
Q 025860 131 SGDSLLECASIAESCKRVVSVGINCTP------PRFISGLILIIKKVTAKPILIYPNSGE 184 (247)
Q Consensus 131 ~G~~~~~~~~~~~~~~~~~avG~NC~~------p~~~~~~l~~l~~~~~~pl~vyPNaG~ 184 (247)
++.+..+.++.+.+ .|++.|-+.... .......++.+++..+.|++ .|+|.
T Consensus 145 ~~~~~~~~a~~l~~-~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi--~nGgI 201 (319)
T TIGR00737 145 AHINAVEAARIAED-AGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVI--GNGDI 201 (319)
T ss_pred CcchHHHHHHHHHH-hCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEE--EeCCC
Confidence 33456677777776 578888776521 12345677778777777754 46664
No 338
>PRK00957 methionine synthase; Provisional
Probab=63.53 E-value=1.1e+02 Score=27.28 Aligned_cols=132 Identities=13% Similarity=0.148 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCEEEE-ec--CCCHHHHHHHHHHHHhhC--CCCcEEEEEEEcCCCcccCCCcHHHHHHHH
Q 025860 68 VETLKDFHRRRVQVLVESAPDLIAF-ET--IPNKIEAQAYAELLEEEN--IKIPAWFSFNSKDGVNVVSGDSLLECASIA 142 (247)
Q Consensus 68 ~~e~~~~~~~q~~~l~~~gvD~i~~-ET--~~~~~E~~aa~~~~~~~~--~~~pv~is~~~~~~~~l~~G~~~~~~~~~~ 142 (247)
..++.+.|++.++.|.++|+++|-+ |. ...+.+.+.+.++++... .+.++.+.+ | | .....+..+
T Consensus 139 ~~dla~~~~~~i~~l~~~G~~~IqiDEP~l~~~~~~~~~~~~~~~~~~~~i~~~v~lH~-C--------G-~~~~i~~~l 208 (305)
T PRK00957 139 IYDLARALRKEAEALEKAGVAMIQIDEPILSTGAYDLEVAKKAIDIITKGLNVPVAMHV-C--------G-DVSNIIDDL 208 (305)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEecChhhhcCCchHHHHHHHHHHHHHhhCCceEEEE-C--------C-CcHHHHHHH
Confidence 4667889999999999999997644 32 112223344444444432 133443333 2 2 124456666
Q ss_pred HhCCCCeEEEEcCCC-hhHHHHHHHHHHhhc-CCC--EEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHc-CC-
Q 025860 143 ESCKRVVSVGINCTP-PRFISGLILIIKKVT-AKP--ILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEV-GA- 216 (247)
Q Consensus 143 ~~~~~~~avG~NC~~-p~~~~~~l~~l~~~~-~~p--l~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~- 216 (247)
.+ .+++++++-.++ .+.+ ..++. ... +.- +++.+ .. ..|. .++++..+.+++..+. +.
T Consensus 209 ~~-~~vd~i~ld~~~~~~~l-~~l~~--~~~~~k~l~~GvId-------~~-~~~~----e~~e~v~~~i~~~~~~~~~~ 272 (305)
T PRK00957 209 LK-FNVDILDHEFASNKKNL-EILEE--KDLIGKKIGFGCVD-------TK-SKSV----ESVDEIKALIEEGIEILGAE 272 (305)
T ss_pred Hh-CCCCEEEEeecCCCCCH-HHHhh--hccCCCEEEEEEEc-------CC-CCCC----CCHHHHHHHHHHHHHhcCHH
Confidence 55 589999999864 3322 22221 111 221 22322 11 1243 3577777776666552 32
Q ss_pred -eEEeecCCC
Q 025860 217 -SLVGGCCRT 225 (247)
Q Consensus 217 -~iIGGCCGt 225 (247)
-+|.=-||.
T Consensus 273 ~l~lsp~CGl 282 (305)
T PRK00957 273 NILIDPDCGM 282 (305)
T ss_pred HEEECCCcCC
Confidence 378888997
No 339
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=63.52 E-value=1.5e+02 Score=28.78 Aligned_cols=147 Identities=12% Similarity=-0.017 Sum_probs=75.1
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEE-----EEe-cCCCHH-HHHHHHHHHHhhC--CCCcEEEEEEEcCCCcccCCCcHH
Q 025860 66 ITVETLKDFHRRRVQVLVESAPDLI-----AFE-TIPNKI-EAQAYAELLEEEN--IKIPAWFSFNSKDGVNVVSGDSLL 136 (247)
Q Consensus 66 ~s~~e~~~~~~~q~~~l~~~gvD~i-----~~E-T~~~~~-E~~aa~~~~~~~~--~~~pv~is~~~~~~~~l~~G~~~~ 136 (247)
+|++++.+ ++..+...|+|+| +.. .+.-++ -++++.+++++.. .+...+..+.+ ++.+..
T Consensus 180 Lsp~~~A~----~~y~~~~GGvD~IKDDE~l~dq~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~Ni-------Ta~~~~ 248 (475)
T CHL00040 180 LSAKNYGR----AVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNA-------TAGTCE 248 (475)
T ss_pred CCHHHHHH----HHHHHHcCCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeecc-------CCCCHH
Confidence 47777666 5555667999998 222 222233 3455555555421 12343334433 233334
Q ss_pred HH---HHHHHhCCCCeEEEEcCC--ChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHH
Q 025860 137 EC---ASIAESCKRVVSVGINCT--PPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKW 211 (247)
Q Consensus 137 ~~---~~~~~~~~~~~avG~NC~--~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 211 (247)
+. ++.+.+ .|..++-+|-. +... ...|.......+.||.+.|+.--.+.. .+...++..- +.+-|
T Consensus 249 em~~ra~~a~e-~G~~~~mv~~~~~G~~a-l~~l~~~~~~~~l~IhaHrA~~ga~~r-----~~~~Gis~~v---l~KL~ 318 (475)
T CHL00040 249 EMYKRAVFARE-LGVPIVMHDYLTGGFTA-NTSLAHYCRDNGLLLHIHRAMHAVIDR-----QKNHGIHFRV---LAKAL 318 (475)
T ss_pred HHHHHHHHHHH-cCCceEEEeccccccch-HHHHHHHhhhcCceEEecccccccccc-----CccCCCcHHH---HHHHH
Confidence 44 444444 47777777774 3332 333333323468999999997533221 1122244422 44446
Q ss_pred HHcCCeEE-----eecCCCChHHHHHH
Q 025860 212 CEVGASLV-----GGCCRTTPNTIKGI 233 (247)
Q Consensus 212 ~~~G~~iI-----GGCCGt~P~hI~al 233 (247)
+=+|+..+ .|=-..+.+....+
T Consensus 319 RLaGaD~ih~~t~~gk~~g~~~~~~~~ 345 (475)
T CHL00040 319 RMSGGDHIHAGTVVGKLEGEREMTLGF 345 (475)
T ss_pred HHcCCCccccCCcccCCCCCHHHHHHH
Confidence 66788876 44344445533334
No 340
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=63.40 E-value=99 Score=26.73 Aligned_cols=65 Identities=29% Similarity=0.339 Sum_probs=34.4
Q ss_pred CCcHHHHHHHHHhCCCCeEEEEcC---CChhHHHHHHHHHHhhcCCC-EEEEeCCCCcccccccccccCCCCChHHHHHH
Q 025860 132 GDSLLECASIAESCKRVVSVGINC---TPPRFISGLILIIKKVTAKP-ILIYPNSGEFYDADRKEWVQNTGVSDEDFVSY 207 (247)
Q Consensus 132 G~~~~~~~~~~~~~~~~~avG~NC---~~p~~~~~~l~~l~~~~~~p-l~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~ 207 (247)
-.++.|+...+. .|++.|=+.= .+|.+ ++.++.. .| +-+.|-+| +++. .+.
T Consensus 119 ~~TpsEi~~A~~--~Ga~~vKlFPA~~~G~~~----ikal~~p--~p~i~~~ptGG---------------V~~~--~~n 173 (222)
T PRK07114 119 CGSLSEIGYAEE--LGCEIVKLFPGSVYGPGF----VKAIKGP--MPWTKIMPTGG---------------VEPT--EEN 173 (222)
T ss_pred CCCHHHHHHHHH--CCCCEEEECcccccCHHH----HHHHhcc--CCCCeEEeCCC---------------CCcc--hhc
Confidence 367888888765 3666655542 34443 4444321 11 22344333 2220 023
Q ss_pred HHHHHHcCCeEEee
Q 025860 208 VSKWCEVGASLVGG 221 (247)
Q Consensus 208 ~~~~~~~G~~iIGG 221 (247)
+.+|++.|+..+|.
T Consensus 174 ~~~yl~aGa~avg~ 187 (222)
T PRK07114 174 LKKWFGAGVTCVGM 187 (222)
T ss_pred HHHHHhCCCEEEEE
Confidence 46688899988883
No 341
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=63.36 E-value=73 Score=25.15 Aligned_cols=84 Identities=14% Similarity=0.038 Sum_probs=55.5
Q ss_pred CCCcHHHHHHHHHhCCCCeEEEEcCC---ChhHHHHHHHHHHhhc--CCCEEEEeCCCCcccccccccccCCCCChHHHH
Q 025860 131 SGDSLLECASIAESCKRVVSVGINCT---PPRFISGLILIIKKVT--AKPILIYPNSGEFYDADRKEWVQNTGVSDEDFV 205 (247)
Q Consensus 131 ~G~~~~~~~~~~~~~~~~~avG~NC~---~p~~~~~~l~~l~~~~--~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~ 205 (247)
--.+.++.++.+.+ .++++||+++- +...+..+++.+++.- +.|+++=-+.. ..++.|.
T Consensus 35 ~~v~~e~~v~aa~~-~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~---------------i~~~d~~ 98 (128)
T cd02072 35 VLSPQEEFIDAAIE-TDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLV---------------VGKQDFE 98 (128)
T ss_pred CCCCHHHHHHHHHH-cCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCC---------------CChhhhH
Confidence 34788999998887 58999999993 5677888888887752 34443322111 1245677
Q ss_pred HHHHHHHHcCCeE-EeecCCCChHHHHH
Q 025860 206 SYVSKWCEVGASL-VGGCCRTTPNTIKG 232 (247)
Q Consensus 206 ~~~~~~~~~G~~i-IGGCCGt~P~hI~a 232 (247)
+...++.++|+.- .| -||.|++|-.
T Consensus 99 ~~~~~L~~~Gv~~vf~--pgt~~~~i~~ 124 (128)
T cd02072 99 DVEKRFKEMGFDRVFA--PGTPPEEAIA 124 (128)
T ss_pred HHHHHHHHcCCCEEEC--cCCCHHHHHH
Confidence 7777888899753 33 3567776643
No 342
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=63.27 E-value=48 Score=29.00 Aligned_cols=81 Identities=4% Similarity=-0.056 Sum_probs=49.7
Q ss_pred HHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhh-CCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCC
Q 025860 78 RVQVLVESAPDLIAFETIPNKIEAQAYAELLEEE-NIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT 156 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~-~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~ 156 (247)
.++.+...|.|+++|..-.+..+++.+..+++.. ..+..+++-+. +. +...+ ..+.+ .|+++|-+=.+
T Consensus 25 ~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~--------~~-~~~~i-~~~Ld-~Ga~gIivP~v 93 (249)
T TIGR02311 25 AAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPA--------IG-DPVLI-KQLLD-IGAQTLLVPMI 93 (249)
T ss_pred HHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECC--------CC-CHHHH-HHHhC-CCCCEEEecCc
Confidence 4555667899999998655555444444444332 11345565542 22 22334 44444 58888888887
Q ss_pred -ChhHHHHHHHHHH
Q 025860 157 -PPRFISGLILIIK 169 (247)
Q Consensus 157 -~p~~~~~~l~~l~ 169 (247)
+++.+..+++..+
T Consensus 94 ~s~e~a~~~v~~~~ 107 (249)
T TIGR02311 94 ETAEQAEAAVAATR 107 (249)
T ss_pred CCHHHHHHHHHHcC
Confidence 7888888888765
No 343
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=63.06 E-value=66 Score=28.78 Aligned_cols=90 Identities=9% Similarity=0.105 Sum_probs=53.7
Q ss_pred HHHHHHHhcCCCCEEEEe-cCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEc
Q 025860 76 RRRVQVLVESAPDLIAFE-TIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGIN 154 (247)
Q Consensus 76 ~~q~~~l~~~gvD~i~~E-T~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~N 154 (247)
...+++..+.|+.+.+=+ +..+.++++ +.. +.|+|+.+.... +-....+.++.+.+ .++++|-+|
T Consensus 84 ~~la~aa~~~g~~~~~~~~~~~~~~~i~-------~~~-~~~~~~ql~~~~-----~~~~~~~~i~~~~~-~g~~~i~l~ 149 (299)
T cd02809 84 LATARAAAAAGIPFTLSTVSTTSLEEVA-------AAA-PGPRWFQLYVPR-----DREITEDLLRRAEA-AGYKALVLT 149 (299)
T ss_pred HHHHHHHHHcCCCEEecCCCcCCHHHHH-------Hhc-CCCeEEEEeecC-----CHHHHHHHHHHHHH-cCCCEEEEe
Confidence 345566667888876644 434444433 222 369999986431 12234556666665 578887776
Q ss_pred CCChh----HHHHHHHHHHhhcCCCEEEE
Q 025860 155 CTPPR----FISGLILIIKKVTAKPILIY 179 (247)
Q Consensus 155 C~~p~----~~~~~l~~l~~~~~~pl~vy 179 (247)
+..|. .....++.+++.++.|+++.
T Consensus 150 ~~~p~~~~~~~~~~i~~l~~~~~~pvivK 178 (299)
T cd02809 150 VDTPVLGRRLTWDDLAWLRSQWKGPLILK 178 (299)
T ss_pred cCCCCCCCCCCHHHHHHHHHhcCCCEEEe
Confidence 65442 12256777777778898776
No 344
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=62.94 E-value=99 Score=28.31 Aligned_cols=140 Identities=15% Similarity=0.177 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCEEEEecC-C--------------C---HHHHHHHHHHHHhhCCCCcEEEEEEEcCC----
Q 025860 69 ETLKDFHRRRVQVLVESAPDLIAFETI-P--------------N---KIEAQAYAELLEEENIKIPAWFSFNSKDG---- 126 (247)
Q Consensus 69 ~e~~~~~~~q~~~l~~~gvD~i~~ET~-~--------------~---~~E~~aa~~~~~~~~~~~pv~is~~~~~~---- 126 (247)
+++.++|+++++ .|+-+|+.|.. . + +...+.+.+++++. +.++++++.-...
T Consensus 33 ~~~~~~y~~~A~----gG~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh~~--g~~~~~Ql~H~G~~~~~ 106 (343)
T cd04734 33 ERYIAYHEERAR----GGAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRRLAEAVHAH--GAVIMIQLTHLGRRGDG 106 (343)
T ss_pred HHHHHHHHHHHh----CCCCEEEEeeeeeCCcccCCCCccccCCHHHHHHHHHHHHHHHhc--CCeEEEeccCCCcCcCc
Confidence 677788887765 78888887733 1 1 23444556666665 3567777642100
Q ss_pred ------------------CcccCCCcHH----------HHHHHHHhCCCCeEEEEcCCC---------h-----------
Q 025860 127 ------------------VNVVSGDSLL----------ECASIAESCKRVVSVGINCTP---------P----------- 158 (247)
Q Consensus 127 ------------------~~l~~G~~~~----------~~~~~~~~~~~~~avG~NC~~---------p----------- 158 (247)
......-+.+ ++++.+.+ .|.|+|-|||.+ |
T Consensus 107 ~~~~~~~~~ps~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~ra~~-aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGG 185 (343)
T cd04734 107 DGSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAARRCQA-GGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGG 185 (343)
T ss_pred ccCCCcccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEEccccchHHHHhhCCCcCCCCCcCCC
Confidence 0001112222 23333344 689999999941 2
Q ss_pred ------hHHHHHHHHHHhhc--CCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcC-CeEE---eecCC
Q 025860 159 ------RFISGLILIIKKVT--AKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVG-ASLV---GGCCR 224 (247)
Q Consensus 159 ------~~~~~~l~~l~~~~--~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~iI---GGCCG 224 (247)
..+..+++.+++.. +.++.+.-|... +.. ...++++..++++.+.+.| +.+| +|.+.
T Consensus 186 slenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~--------~~~-~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~ 254 (343)
T cd04734 186 SLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDE--------DTE-GGLSPDEALEIAARLAAEGLIDYVNVSAGSYY 254 (343)
T ss_pred CHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhh--------ccC-CCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCC
Confidence 33456667777765 345777766532 111 1245778888888888888 6755 66554
No 345
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=62.10 E-value=1.2e+02 Score=28.01 Aligned_cols=142 Identities=11% Similarity=0.121 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCEEEEe-----cCC----CHHHHHHHHHHHH----hhCCCCcEEEEEEEcCCCcccCCCcH
Q 025860 69 ETLKDFHRRRVQVLVESAPDLIAFE-----TIP----NKIEAQAYAELLE----EENIKIPAWFSFNSKDGVNVVSGDSL 135 (247)
Q Consensus 69 ~e~~~~~~~q~~~l~~~gvD~i~~E-----T~~----~~~E~~aa~~~~~----~~~~~~pv~is~~~~~~~~l~~G~~~ 135 (247)
.++..+.++.++.|.+.||++|-+- |.+ +.+++..+++.+- ..+.+.++.+-+
T Consensus 142 ~~ia~~l~~e~~~l~~~gv~~IqIDEP~l~~~~~~~~~~~~~i~Al~~a~~~a~~~gvdv~i~lH~-------------- 207 (344)
T PRK06052 142 KSVERFVENAIKSAKNFKIKTISIDEPSLGINPEIQFSDDEIISALTVASTYARKQGADVEIHLHS-------------- 207 (344)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEecCcccccCCccccCHHHHHHHHHHHHhhhccCCcceEEEEeh--------------
Confidence 5677788889999999999999553 333 5566666666551 112233333322
Q ss_pred HHHH-HHHHhCCCCeEEEEcCC-ChhHHHHHHHHHH-hhcCCC--EEEEeC--CCC--cccc--ccccccc--------C
Q 025860 136 LECA-SIAESCKRVVSVGINCT-PPRFISGLILIIK-KVTAKP--ILIYPN--SGE--FYDA--DRKEWVQ--------N 196 (247)
Q Consensus 136 ~~~~-~~~~~~~~~~avG~NC~-~p~~~~~~l~~l~-~~~~~p--l~vyPN--aG~--~~d~--~~~~~~~--------~ 196 (247)
.+. ..+.+..+++.+|+-+. .|+.+ .+++... ...++. ++|.=- .+. .++. .++.|.. .
T Consensus 208 -~l~~~~i~~~~~idvi~~E~A~~~~~L-~~l~~~~~e~~dk~ig~GV~dtd~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 285 (344)
T PRK06052 208 -PLYYELICETPGINVIGVESAATPSYL-DLIDKKVLEDTDTFLRVGVARTDIFSLIAILNEKYGTNAWKDKEYLQEIVT 285 (344)
T ss_pred -HhhHHHHhcCCCCCEEeeeccCChHHH-HHHhhhhhhhcCCceEEeEEEchhhcchhhhhhhcccccccchhhccccCC
Confidence 233 44445445999999998 57443 4444321 011232 344332 110 1111 1345643 1
Q ss_pred CCCChHHHHHHHHHHHH---cCCeEEeecCCCC
Q 025860 197 TGVSDEDFVSYVSKWCE---VGASLVGGCCRTT 226 (247)
Q Consensus 197 ~~~~~~~~~~~~~~~~~---~G~~iIGGCCGt~ 226 (247)
.-.+++++.+..++.++ ..--+|.=-||-.
T Consensus 286 ~VEsveEI~~rI~~ale~i~~e~lwVNPDCGLK 318 (344)
T PRK06052 286 ELETPEVIKKRLEKAYSIFGDRIKYVGPDCGLG 318 (344)
T ss_pred CCCCHHHHHHHHHHHHHhCChhhEEECCCCCCC
Confidence 22577888877776654 3456678889854
No 346
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=62.04 E-value=1e+02 Score=26.40 Aligned_cols=64 Identities=20% Similarity=0.116 Sum_probs=41.0
Q ss_pred EecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHH---HHhCCCCeEEEEcCC
Q 025860 92 FETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASI---AESCKRVVSVGINCT 156 (247)
Q Consensus 92 ~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~---~~~~~~~~avG~NC~ 156 (247)
..++.++..++.+-+++++.+...+||+.+.+.+ +..+.|.+..++.+. +....++...|+.|-
T Consensus 98 ~~~vds~~~~~~l~~~a~~~~~~~~V~l~vdtg~-gm~R~G~~~~e~~~~~~~i~~~~~l~l~Gl~th 164 (229)
T TIGR00044 98 VHTIDSLKIAKKLNEQREKLQPPLNVLLQINISD-EESKSGIQPEELLELAIQIEELKHLKLRGLMTI 164 (229)
T ss_pred EEEECCHHHHHHHHHHHHhcCCCceEEEEEECCC-CCCCCCCCHHHHHHHHHHHhcCCCCeEEEEEEe
Confidence 3577777777777777666544466777776532 334568776554443 344457888999884
No 347
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=62.03 E-value=37 Score=30.92 Aligned_cols=63 Identities=11% Similarity=0.162 Sum_probs=42.0
Q ss_pred HHHHHhc------CCCCEEEEecC--------CCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHH
Q 025860 78 RVQVLVE------SAPDLIAFETI--------PNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAE 143 (247)
Q Consensus 78 q~~~l~~------~gvD~i~~ET~--------~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~ 143 (247)
|+...++ +|+|.|++..| .++++++.+++.++. ..| +..+ .|.+++.+.+...
T Consensus 215 ea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~~~~~---~~~--lEaS--------GGIt~~ni~~yA~ 281 (308)
T PLN02716 215 EVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVELING---RFE--TEAS--------GNVTLDTVHKIGQ 281 (308)
T ss_pred HHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHHHHHHHhhCC---Cce--EEEE--------CCCCHHHHHHHHH
Confidence 4455566 89999999998 368888888876552 223 3332 4677777777553
Q ss_pred hCCCCeEEEEcC
Q 025860 144 SCKRVVSVGINC 155 (247)
Q Consensus 144 ~~~~~~avG~NC 155 (247)
.|+|.|-+-.
T Consensus 282 --tGVD~Is~Ga 291 (308)
T PLN02716 282 --TGVTYISSGA 291 (308)
T ss_pred --cCCCEEEeCc
Confidence 4788766544
No 348
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=61.99 E-value=1.2e+02 Score=27.34 Aligned_cols=91 Identities=8% Similarity=-0.103 Sum_probs=58.8
Q ss_pred HHHHHhcCCCCEEEEecCC--------------CHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHH
Q 025860 78 RVQVLVESAPDLIAFETIP--------------NKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAE 143 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~--------------~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~ 143 (247)
-++.+.++||-.|-||-.. +.+|...=++++++.-.+.+++|---.+- ..+..++++++..+
T Consensus 97 ~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa----~~~~g~deaI~Ra~ 172 (294)
T TIGR02319 97 ATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDA----RESFGLDEAIRRSR 172 (294)
T ss_pred HHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecc----cccCCHHHHHHHHH
Confidence 5677888999999999743 45566666666665432345555444322 13456888888875
Q ss_pred h--CCCCeEEEEcCC-ChhHHHHHHHHHHhhcCCCE
Q 025860 144 S--CKRVVSVGINCT-PPRFISGLILIIKKVTAKPI 176 (247)
Q Consensus 144 ~--~~~~~avG~NC~-~p~~~~~~l~~l~~~~~~pl 176 (247)
. ..|+|+|=+-+. +++.+..+.+. .+.|+
T Consensus 173 aY~eAGAD~ifi~~~~~~~ei~~~~~~----~~~P~ 204 (294)
T TIGR02319 173 EYVAAGADCIFLEAMLDVEEMKRVRDE----IDAPL 204 (294)
T ss_pred HHHHhCCCEEEecCCCCHHHHHHHHHh----cCCCe
Confidence 3 258999888764 56666655554 45776
No 349
>PRK07094 biotin synthase; Provisional
Probab=61.81 E-value=43 Score=30.07 Aligned_cols=74 Identities=15% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCEEEE--ecC-----------CCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHH
Q 025860 76 RRRVQVLVESAPDLIAF--ETI-----------PNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIA 142 (247)
Q Consensus 76 ~~q~~~l~~~gvD~i~~--ET~-----------~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~ 142 (247)
.+.++.|.++|+|.+.+ ||. .+.++...+++.+++. +.++...|.+--.+.+. +.+.+.+..+
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~--Gi~v~~~~iiGlpget~--ed~~~~l~~l 204 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKEL--GYEVGSGFMVGLPGQTL--EDLADDILFL 204 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHc--CCeecceEEEECCCCCH--HHHHHHHHHH
Q ss_pred HhCCCCeEEEEc
Q 025860 143 ESCKRVVSVGIN 154 (247)
Q Consensus 143 ~~~~~~~avG~N 154 (247)
.+ .+++.+++|
T Consensus 205 ~~-l~~~~v~~~ 215 (323)
T PRK07094 205 KE-LDLDMIGIG 215 (323)
T ss_pred Hh-CCCCeeeee
No 350
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=61.81 E-value=91 Score=28.56 Aligned_cols=92 Identities=11% Similarity=0.083 Sum_probs=54.9
Q ss_pred HHHHHhCCCCeEEEEcCCC---------h-----------------hHHHHHHHHHHhhcCC-CEEEEeCCCCccccccc
Q 025860 139 ASIAESCKRVVSVGINCTP---------P-----------------RFISGLILIIKKVTAK-PILIYPNSGEFYDADRK 191 (247)
Q Consensus 139 ~~~~~~~~~~~avG~NC~~---------p-----------------~~~~~~l~~l~~~~~~-pl~vyPNaG~~~d~~~~ 191 (247)
++.+.+ .|.|+|=|||.+ | ..+.++++.+++.... ||++.-|.....++.
T Consensus 158 A~~a~~-aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~-- 234 (338)
T cd02933 158 ARNAIE-AGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDM-- 234 (338)
T ss_pred HHHHHH-cCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCC--
Confidence 333344 599999999876 3 3455677777776533 788888875421110
Q ss_pred ccccCCCCChHHHHHHHHHHHHcCCeEE---eecCC-----CChHHHHHHHHHh
Q 025860 192 EWVQNTGVSDEDFVSYVSKWCEVGASLV---GGCCR-----TTPNTIKGIYRTL 237 (247)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~G~~iI---GGCCG-----t~P~hI~al~~~l 237 (247)
.| ..+.+++.+.++...+.|+.+| +|.+. ...+..+.+++.+
T Consensus 235 ~~----~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~ 284 (338)
T cd02933 235 GD----SDPEATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAF 284 (338)
T ss_pred CC----CCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHc
Confidence 11 1356777787777777887665 34332 2334455565554
No 351
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=61.78 E-value=1.1e+02 Score=26.88 Aligned_cols=100 Identities=15% Similarity=0.132 Sum_probs=57.7
Q ss_pred HHHHHhcCCCCEEEEecCC---------------CHHHHHHHHHHHHhhCCCCcEEEEE-EEcCCCcccCCCcHHHHHHH
Q 025860 78 RVQVLVESAPDLIAFETIP---------------NKIEAQAYAELLEEENIKIPAWFSF-NSKDGVNVVSGDSLLECASI 141 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~---------------~~~E~~aa~~~~~~~~~~~pv~is~-~~~~~~~l~~G~~~~~~~~~ 141 (247)
-++.+.+.|+|.+-+-+-. .++.++.+++.+++.+ ..+.++. .+.+..+. +-+-+.+.++.
T Consensus 83 ~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G--~~v~~~~~~~~d~~~~-~~~~~~~~~~~ 159 (273)
T cd07941 83 NLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHG--REVIFDAEHFFDGYKA-NPEYALATLKA 159 (273)
T ss_pred HHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC--CeEEEeEEeccccCCC-CHHHHHHHHHH
Confidence 4556778899988764322 2334455666777764 4544432 23222121 22333455555
Q ss_pred HHhCCCCeEEEEcCC----ChhHHHHHHHHHHhhcC-CCEEEEeC
Q 025860 142 AESCKRVVSVGINCT----PPRFISGLILIIKKVTA-KPILIYPN 181 (247)
Q Consensus 142 ~~~~~~~~avG~NC~----~p~~~~~~l~~l~~~~~-~pl~vyPN 181 (247)
+.+ .+++.|.+-=+ .|+.+..+++.+++..+ .||.+...
T Consensus 160 ~~~-~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~H 203 (273)
T cd07941 160 AAE-AGADWLVLCDTNGGTLPHEIAEIVKEVRERLPGVPLGIHAH 203 (273)
T ss_pred HHh-CCCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCCeeEEEec
Confidence 555 47776654422 49999999999987654 67766553
No 352
>PF08267 Meth_synt_1: Cobalamin-independent synthase, N-terminal domain; InterPro: IPR013215 Cobalamin-independent methionine synthase, MetE, catalyses the synthesis of the amino acid methionine by the transfer of a methyl group from methyltetrahydrofolate to homocysteine []. The N-terminal and C-terminal domains of MetE together define a catalytic cleft in the enzyme. The N-terminal domain is thought to bind the substrate, in particular, the negatively charged polyglutamate chain. The N-terminal domain is also thought to stabilise a loop from the C-terminal domain.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0008270 zinc ion binding, 0008652 cellular amino acid biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3T0C_A 3L7R_A 2NQ5_A 3PPF_A 3PPH_A 3PPG_A ....
Probab=61.71 E-value=65 Score=29.32 Aligned_cols=87 Identities=13% Similarity=0.129 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEe----cCC-CHHHHHHHHHHHHhh--CCCCcEEEEEEEcCCCcccCCCcHHHHHH
Q 025860 68 VETLKDFHRRRVQVLVESAPDLIAFE----TIP-NKIEAQAYAELLEEE--NIKIPAWFSFNSKDGVNVVSGDSLLECAS 140 (247)
Q Consensus 68 ~~e~~~~~~~q~~~l~~~gvD~i~~E----T~~-~~~E~~aa~~~~~~~--~~~~pv~is~~~~~~~~l~~G~~~~~~~~ 140 (247)
.+++...|.+.++.|.+.||+.+-++ +.. +..+..++..+.++. ..+.+++++..|.+ +.+...
T Consensus 176 l~~l~~vY~~ll~~L~~~G~~~VQldEP~Lv~d~~~~~~~~~~~aY~~L~~~~~~~ill~TYFg~---------~~~~l~ 246 (310)
T PF08267_consen 176 LDDLLPVYAELLKELAAAGVEWVQLDEPALVLDLPEEWLEAFEEAYEELAAAPRPKILLATYFGD---------LGDNLE 246 (310)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SEEEEE-GGGGSSGCHHHHHHHHHHHHHHCCTTTSEEEEE--SS-----------CCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEecCCeeecCCCHHHHHHHHHHHHHHhcCCCCcEEEECCCCc---------hhhHHH
Confidence 36788899999999999999999555 111 233444444444444 34678888887743 233455
Q ss_pred HHHhCCCCeEEEEcCC-ChhHHHHH
Q 025860 141 IAESCKRVVSVGINCT-PPRFISGL 164 (247)
Q Consensus 141 ~~~~~~~~~avG~NC~-~p~~~~~~ 164 (247)
.+.+ ..+++||+-.+ +++.+..+
T Consensus 247 ~l~~-lpv~~l~lDlv~~~~~l~~~ 270 (310)
T PF08267_consen 247 LLLD-LPVDGLHLDLVRGPENLEAL 270 (310)
T ss_dssp HHTT-SSESEEEEETTTHCHHHHHH
T ss_pred HHhc-CCCcEEEeeccCCcccHHHH
Confidence 5555 57999999999 45554333
No 353
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=61.61 E-value=1.2e+02 Score=27.03 Aligned_cols=143 Identities=15% Similarity=0.140 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCEEEE-ecCC-----CHHHHH--------HHHHHHHhhCCCCcEEEEEEEcCCCcccCCCc
Q 025860 69 ETLKDFHRRRVQVLVESAPDLIAF-ETIP-----NKIEAQ--------AYAELLEEENIKIPAWFSFNSKDGVNVVSGDS 134 (247)
Q Consensus 69 ~e~~~~~~~q~~~l~~~gvD~i~~-ET~~-----~~~E~~--------aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~ 134 (247)
+.+.+...++++.+.++|+|+|.+ |-.. +.++.+ .+++.+++. +.|+++-. | |..
T Consensus 164 ~~i~~~~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~--g~~~~lH~-c--------G~~ 232 (330)
T cd03465 164 EKCTEFIIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKAL--GGPVIHHN-C--------GDT 232 (330)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHc--CCceEEEE-C--------CCc
Confidence 445556677788888899997754 4221 333333 233334433 35655433 2 211
Q ss_pred HHHHHHHHHhCCCCeEEEEcCCChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHc
Q 025860 135 LLECASIAESCKRVVSVGINCTPPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEV 214 (247)
Q Consensus 135 ~~~~~~~~~~~~~~~avG~NC~~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (247)
...+..+.+ .+++++.+--. ..+..+.+ ..+..+.++-|-... ..... -++++..+.+++.++.
T Consensus 233 -~~~~~~l~~-~~~d~~~~d~~--~dl~~~~~----~~g~~~~i~G~id~~------~~l~~--gt~eei~~~v~~~l~~ 296 (330)
T cd03465 233 -APILELMAD-LGADVFSIDVT--VDLAEAKK----KVGDKACLMGNLDPI------DVLLN--GSPEEIKEEVKELLEK 296 (330)
T ss_pred -hhHHHHHHH-hCCCeEeeccc--CCHHHHHH----HhCCceEEEeCcChH------HhhcC--CCHHHHHHHHHHHHHH
Confidence 134555555 45665444222 12223322 223335555554221 01111 2578888888888765
Q ss_pred CC-----eEEeecCC----CChHHHHHHHHHhh
Q 025860 215 GA-----SLVGGCCR----TTPNTIKGIYRTLS 238 (247)
Q Consensus 215 G~-----~iIGGCCG----t~P~hI~al~~~l~ 238 (247)
+. -|++--|| |-++.|+++.++++
T Consensus 297 ~~~~~~~~il~~gc~i~~~~p~enl~a~v~a~~ 329 (330)
T cd03465 297 LLKGGGGYILSSGCEIPPDTPIENIKAMIDAVR 329 (330)
T ss_pred HhCCCCCEEEeCCCCCCCCCCHHHHHHHHHHHh
Confidence 32 37776676 56899999988765
No 354
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=61.58 E-value=1.2e+02 Score=27.10 Aligned_cols=92 Identities=17% Similarity=0.200 Sum_probs=65.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEe--cCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHH
Q 025860 61 NYGDAITVETLKDFHRRRVQVLVESAPDLIAFE--TIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLEC 138 (247)
Q Consensus 61 ~y~~~~s~~e~~~~~~~q~~~l~~~gvD~i~~E--T~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~ 138 (247)
+|+. -|.+++.++-.+.++.|.+-+++++++= |.+ -.+++.+|+.. +.||+=.+ .| +..|
T Consensus 43 PYG~-ks~e~I~~~~~~i~~~l~~~~ik~lVIACNTAS-----a~al~~LR~~~-~iPVvGvi---------Pa--ik~A 104 (269)
T COG0796 43 PYGE-KSEEEIRERTLEIVDFLLERGIKALVIACNTAS-----AVALEDLREKF-DIPVVGVI---------PA--IKPA 104 (269)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHHHcCCCEEEEecchHH-----HHHHHHHHHhC-CCCEEEec---------cc--hHHH
Confidence 5554 6889999999999999999999998765 444 45677788765 78988332 22 3445
Q ss_pred HHHHHhCCCCeEEEEcCC-ChhHHHHHHHHHHhh
Q 025860 139 ASIAESCKRVVSVGINCT-PPRFISGLILIIKKV 171 (247)
Q Consensus 139 ~~~~~~~~~~~avG~NC~-~p~~~~~~l~~l~~~ 171 (247)
++.-+. ..+-.|+-++| .......+++++...
T Consensus 105 ~~~t~~-~~IgViaT~~Tvks~~y~~~i~~~~~~ 137 (269)
T COG0796 105 VALTRN-GRIGVIATPATVKSNAYRDLIARFAPD 137 (269)
T ss_pred HHhccC-CeEEEEeccchhccHHHHHHHHHhCCC
Confidence 554443 35778899998 677778888877543
No 355
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=61.40 E-value=1.6e+02 Score=28.48 Aligned_cols=152 Identities=11% Similarity=0.038 Sum_probs=81.6
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEE-----EE-ecCCCHHH-HHHHHHHHHhhC--CCCcEEEEEEEcCCCcccCCCcHH
Q 025860 66 ITVETLKDFHRRRVQVLVESAPDLI-----AF-ETIPNKIE-AQAYAELLEEEN--IKIPAWFSFNSKDGVNVVSGDSLL 136 (247)
Q Consensus 66 ~s~~e~~~~~~~q~~~l~~~gvD~i-----~~-ET~~~~~E-~~aa~~~~~~~~--~~~pv~is~~~~~~~~l~~G~~~~ 136 (247)
++++++.+ ++..+...|+|+| +. .++.-++| ++++.+++++.. .+.+.+.++.+ +|.+..
T Consensus 173 Lsp~~~a~----~~y~~~~GGvD~IKDDE~l~~q~f~p~~~Rv~~~~~a~~~a~~eTG~~k~y~~Ni-------T~~~~~ 241 (468)
T PRK04208 173 LSAKNYGR----VVYEALRGGLDFTKDDENLNSQPFNRWRDRFLFVMEAIDKAEAETGERKGHYLNV-------TAPTME 241 (468)
T ss_pred CCHHHHHH----HHHHHHhcCCceeeCCCCCCCCCCccHHHHHHHHHHHHHHHHHhhCCcceEEEec-------CCCCHH
Confidence 57777666 5555667999998 22 23333443 444555554421 13444444543 343344
Q ss_pred HHHH---HHHhCCCCeEEEEcCC--ChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHH
Q 025860 137 ECAS---IAESCKRVVSVGINCT--PPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKW 211 (247)
Q Consensus 137 ~~~~---~~~~~~~~~avG~NC~--~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 211 (247)
+..+ .+.+ .|+.++.+|.. +... ...|.......+.||.+.|+.--.+... +...++..-|. +-|
T Consensus 242 em~~ra~~~~e-~G~~~~mv~~~~~G~~~-l~~l~~~~~~~~l~IhaHrA~~ga~~r~-----~~~Gis~~vl~---Kl~ 311 (468)
T PRK04208 242 EMYKRAEFAKE-LGSPIVMIDVVTAGWTA-LQSLREWCRDNGLALHAHRAMHAAFTRN-----PNHGISFRVLA---KLL 311 (468)
T ss_pred HHHHHHHHHHH-hCCCEEEEeccccccHH-HHHHHHhhhcCCcEEEecCCcccccccC-----cCCCCCHHHHH---HHH
Confidence 4433 3444 57888999884 4333 3344433234689999999875332211 12224443333 335
Q ss_pred HHcCCeE--Ee---ecCCCChHHHHHHHHHhh
Q 025860 212 CEVGASL--VG---GCCRTTPNTIKGIYRTLS 238 (247)
Q Consensus 212 ~~~G~~i--IG---GCCGt~P~hI~al~~~l~ 238 (247)
+=+|+.. +| |==..+++....+++.+.
T Consensus 312 RLaGaD~ih~~t~~Gk~~~~~~~~~~~~~~l~ 343 (468)
T PRK04208 312 RLIGVDHLHTGTVVGKLEGDRAEVLGYYDILR 343 (468)
T ss_pred HHcCCCccccCCccCCccCCHHHHHHHHHHHh
Confidence 5557553 34 444467888888877553
No 356
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=61.38 E-value=1.3e+02 Score=28.10 Aligned_cols=112 Identities=15% Similarity=0.174 Sum_probs=63.8
Q ss_pred CCHH---HHHHHHHHHHHHHhcCCCCEEEEecCC----------------------C-HHHHHHHHH---HHHhh-CCCC
Q 025860 66 ITVE---TLKDFHRRRVQVLVESAPDLIAFETIP----------------------N-KIEAQAYAE---LLEEE-NIKI 115 (247)
Q Consensus 66 ~s~~---e~~~~~~~q~~~l~~~gvD~i~~ET~~----------------------~-~~E~~aa~~---~~~~~-~~~~ 115 (247)
.|.+ ++.+.|.+-++...++|.|.+=+=.-. + ...++.+++ .+|+. +.+.
T Consensus 140 mt~~eI~~ii~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f 219 (382)
T cd02931 140 LTTEEVETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDF 219 (382)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCc
Confidence 4554 466678888888888999998443311 1 123444444 44443 3345
Q ss_pred cEEEEEEEcCC------------CcccCCCcHHHHHHHH---HhCCCCeEEEEcCCC--------h------hHHHHHHH
Q 025860 116 PAWFSFNSKDG------------VNVVSGDSLLECASIA---ESCKRVVSVGINCTP--------P------RFISGLIL 166 (247)
Q Consensus 116 pv~is~~~~~~------------~~l~~G~~~~~~~~~~---~~~~~~~avG~NC~~--------p------~~~~~~l~ 166 (247)
||++-++..+. .....|.++++.++.+ .+ .++|.|=+-... | .......+
T Consensus 220 ~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~-~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~ 298 (382)
T cd02931 220 PVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEE-AGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCK 298 (382)
T ss_pred eEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHH-hCCCEEEeCCCCCcccccccCCccCCcchhHHHHH
Confidence 77777764321 0113467778765444 34 478887665321 1 11135667
Q ss_pred HHHhhcCCCEEE
Q 025860 167 IIKKVTAKPILI 178 (247)
Q Consensus 167 ~l~~~~~~pl~v 178 (247)
.+++..+.|+++
T Consensus 299 ~ik~~~~~pvi~ 310 (382)
T cd02931 299 ALKEVVDVPVIM 310 (382)
T ss_pred HHHHHCCCCEEE
Confidence 777778889765
No 357
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=61.17 E-value=1.3e+02 Score=27.31 Aligned_cols=107 Identities=14% Similarity=0.127 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEecC----------------CCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCccc
Q 025860 67 TVETLKDFHRRRVQVLVESAPDLIAFETI----------------PNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVV 130 (247)
Q Consensus 67 s~~e~~~~~~~q~~~l~~~gvD~i~~ET~----------------~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~ 130 (247)
+++++.+ -++.+.+.|+|.|=+-.= .+.+.+..+++.+++.- +.|+.+-+.. +...
T Consensus 75 ~~~~~~~----aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~-d~pv~vKiR~---G~~~ 146 (321)
T PRK10415 75 DPKEMAD----AARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAV-DVPVTLKIRT---GWAP 146 (321)
T ss_pred CHHHHHH----HHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhc-CCceEEEEEc---cccC
Confidence 5566544 445556678888844322 23556777777777653 6787776652 2112
Q ss_pred CCCcHHHHHHHHHhCCCCeEEEEcCCC-h-----hHHHHHHHHHHhhcCCCEEEEeCCCC
Q 025860 131 SGDSLLECASIAESCKRVVSVGINCTP-P-----RFISGLILIIKKVTAKPILIYPNSGE 184 (247)
Q Consensus 131 ~G~~~~~~~~~~~~~~~~~avG~NC~~-p-----~~~~~~l~~l~~~~~~pl~vyPNaG~ 184 (247)
+.....+.++.+.+ .|+++|-+.+.. + ..-...++++++..+.|+ ..|+|.
T Consensus 147 ~~~~~~~~a~~le~-~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPV--I~nGgI 203 (321)
T PRK10415 147 EHRNCVEIAQLAED-CGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPV--IANGDI 203 (321)
T ss_pred CcchHHHHHHHHHH-hCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcE--EEeCCC
Confidence 23356677777766 588888777631 1 112457777777778884 456664
No 358
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=61.15 E-value=52 Score=30.82 Aligned_cols=96 Identities=13% Similarity=0.019 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCEEEEec------C--CCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHH
Q 025860 69 ETLKDFHRRRVQVLVESAPDLIAFET------I--PNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECAS 140 (247)
Q Consensus 69 ~e~~~~~~~q~~~l~~~gvD~i~~ET------~--~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~ 140 (247)
+.+.+...+..+... .|+++++ |. + .++.+.-..+.++++.+ -|+.+.+. -++...|+++++++.
T Consensus 154 ~rl~esL~eI~~~~~-~~v~~~i-E~Kp~Ep~~y~t~~~~~~~~l~l~~~lg--~~~~v~lD---~GH~~~~Enia~~~a 226 (378)
T TIGR02635 154 DRLEESLAEVYEHLG-ADMRLLI-EYKFFEPAFYHTDIPDWGTAYALSEKLG--ERALVLVD---TGHHAQGTNIEFIVA 226 (378)
T ss_pred HHHHHHHHHHHHhCc-CCCEEEE-ecCCCCCceeeecCCcHHHHHHHHHhhC--CCceEEee---cCccCCCCCHHHHHH
Confidence 334444444443332 4777665 43 0 11234444444555553 44555553 344457999999777
Q ss_pred HHHhCCCCeEEEEcCC------------ChhHHHHHHHHHHhh
Q 025860 141 IAESCKRVVSVGINCT------------PPRFISGLILIIKKV 171 (247)
Q Consensus 141 ~~~~~~~~~avG~NC~------------~p~~~~~~l~~l~~~ 171 (247)
.+........|=+|=. +|..+..+++++.+.
T Consensus 227 ~l~~~~kL~hiH~nd~~~~Ddd~~vG~~d~~e~~~il~el~~~ 269 (378)
T TIGR02635 227 TLLDEKKLGGFHFNSRKYADDDLTVGAINPYELFLIFKEIVRA 269 (378)
T ss_pred HHhhCCceeEEEecCCCcccCCCceecCCHHHHHHHHHHHHhc
Confidence 6653233333445421 255667777777654
No 359
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=60.86 E-value=58 Score=28.67 Aligned_cols=63 Identities=11% Similarity=0.064 Sum_probs=43.7
Q ss_pred HHHHHhcCCCCEEEEe-cCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcC
Q 025860 78 RVQVLVESAPDLIAFE-TIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINC 155 (247)
Q Consensus 78 q~~~l~~~gvD~i~~E-T~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC 155 (247)
|+....++|+|++++- +.-+..+++.+++.+++.+ +-+++-+. +.+++-+ +.+ .+++.||+|=
T Consensus 125 qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lG--l~~lvevh-----------~~~E~~~-A~~-~gadiIgin~ 188 (260)
T PRK00278 125 QIYEARAAGADAILLIVAALDDEQLKELLDYAHSLG--LDVLVEVH-----------DEEELER-ALK-LGAPLIGINN 188 (260)
T ss_pred HHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcC--CeEEEEeC-----------CHHHHHH-HHH-cCCCEEEECC
Confidence 7888888999999877 4435678888888888764 55554442 3344533 334 4899999995
No 360
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=60.75 E-value=47 Score=33.75 Aligned_cols=89 Identities=16% Similarity=0.211 Sum_probs=59.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEecCCC---HHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCc
Q 025860 58 YSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPN---KIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDS 134 (247)
Q Consensus 58 Y~g~y~~~~s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~---~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~ 134 (247)
|+|+..++-..+--.++|...++-|+++|..++-+-.|-- ..-++..+-++|+..+++|+-+--. | .+|..
T Consensus 703 YtGDv~dp~rtKY~L~YY~nlad~lV~agtHiL~IKDMAG~lKP~aa~lLi~alRdk~PdlPiHvHtH--D----tsGag 776 (1176)
T KOG0369|consen 703 YTGDVLDPSRTKYNLDYYLNLADKLVKAGTHILGIKDMAGVLKPEAAKLLIGALRDKFPDLPIHVHTH--D----TSGAG 776 (1176)
T ss_pred eccccCCcccccccHHHHHHHHHHHHhccCeEEeehhhhcccCHHHHHHHHHHHHhhCCCCceEEecc--C----CccHH
Confidence 6666644222244567899999999999999998876644 4456667778888777999886542 1 26766
Q ss_pred HHHHHHHHHhCCCCeEEEEc
Q 025860 135 LLECASIAESCKRVVSVGIN 154 (247)
Q Consensus 135 ~~~~~~~~~~~~~~~avG~N 154 (247)
++....-+ . .|+|+|-+.
T Consensus 777 VAsMlaca-~-AGADVVDvA 794 (1176)
T KOG0369|consen 777 VASMLACA-L-AGADVVDVA 794 (1176)
T ss_pred HHHHHHHH-H-cCCceeeee
Confidence 66555433 3 366665543
No 361
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=60.64 E-value=24 Score=33.51 Aligned_cols=74 Identities=16% Similarity=0.245 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCC---CHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCe
Q 025860 73 DFHRRRVQVLVESAPDLIAFETIP---NKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVV 149 (247)
Q Consensus 73 ~~~~~q~~~l~~~gvD~i~~ET~~---~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~ 149 (247)
++|.+.++.|.+.|||-|.|-.++ ++.++-..++++|+.- ++|+ .+.+.. -+|.+....++.+. .|+|
T Consensus 156 e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~-~~pv--~lHtH~----TsG~a~m~ylkAvE--AGvD 226 (472)
T COG5016 156 EYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKEL-PVPV--ELHTHA----TSGMAEMTYLKAVE--AGVD 226 (472)
T ss_pred HHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhc-CCee--EEeccc----ccchHHHHHHHHHH--hCcc
Confidence 568889999999999999998665 5667777777777743 3444 444322 25766665555554 3566
Q ss_pred EEEEcC
Q 025860 150 SVGINC 155 (247)
Q Consensus 150 avG~NC 155 (247)
.|-..+
T Consensus 227 ~iDTAi 232 (472)
T COG5016 227 GIDTAI 232 (472)
T ss_pred hhhhhh
Confidence 655544
No 362
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=60.41 E-value=1.1e+02 Score=26.46 Aligned_cols=80 Identities=13% Similarity=0.165 Sum_probs=45.6
Q ss_pred HHHHHhcCCCCEEEE--ecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcC
Q 025860 78 RVQVLVESAPDLIAF--ETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINC 155 (247)
Q Consensus 78 q~~~l~~~gvD~i~~--ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC 155 (247)
.++.|.++|+|.|.| |+.. .....+++.+|+.+ ..+-+.+ ..+++++.....+.....+..+.+|=
T Consensus 74 ~i~~~~~aGad~it~H~Ea~~--~~~~~~i~~Ik~~G--~kaGlal--------nP~T~~~~l~~~l~~vD~VLvMsV~P 141 (229)
T PRK09722 74 YIDQLADAGADFITLHPETIN--GQAFRLIDEIRRAG--MKVGLVL--------NPETPVESIKYYIHLLDKITVMTVDP 141 (229)
T ss_pred HHHHHHHcCCCEEEECccCCc--chHHHHHHHHHHcC--CCEEEEe--------CCCCCHHHHHHHHHhcCEEEEEEEcC
Confidence 567788899998875 6432 22445667788775 4444444 24678877766665433344455554
Q ss_pred C--ChhHHHHHHHHHH
Q 025860 156 T--PPRFISGLILIIK 169 (247)
Q Consensus 156 ~--~p~~~~~~l~~l~ 169 (247)
. +-..+...++.++
T Consensus 142 Gf~GQ~fi~~~l~KI~ 157 (229)
T PRK09722 142 GFAGQPFIPEMLDKIA 157 (229)
T ss_pred CCcchhccHHHHHHHH
Confidence 3 2234444444443
No 363
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=60.32 E-value=29 Score=30.19 Aligned_cols=52 Identities=15% Similarity=0.144 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhcCCC--CEEEEecC-----CCHHHHHHHHHHHHhhCCCCcEEEE-EEEcC
Q 025860 72 KDFHRRRVQVLVESAP--DLIAFETI-----PNKIEAQAYAELLEEENIKIPAWFS-FNSKD 125 (247)
Q Consensus 72 ~~~~~~q~~~l~~~gv--D~i~~ET~-----~~~~E~~aa~~~~~~~~~~~pv~is-~~~~~ 125 (247)
.+.|.+.++.|.+.|+ |.|-++.- +++.+++..++.+.+. ++||+|| +.+..
T Consensus 135 ~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l~~~~~~--g~pi~iTE~dv~~ 194 (254)
T smart00633 135 RQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAALDRFASL--GLEIQITELDISG 194 (254)
T ss_pred HHHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHHHHHHHc--CCceEEEEeecCC
Confidence 3467778888877664 77766532 6778888888887776 5899988 66543
No 364
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=60.28 E-value=1.4e+02 Score=27.53 Aligned_cols=98 Identities=19% Similarity=0.193 Sum_probs=58.3
Q ss_pred HHHHHhcCCCCEEEEe-cCCC--------------HHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHH
Q 025860 78 RVQVLVESAPDLIAFE-TIPN--------------KIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIA 142 (247)
Q Consensus 78 q~~~l~~~gvD~i~~E-T~~~--------------~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~ 142 (247)
-++.+.++|+|.|-+= ..++ ++.+..+++.+++.+ ..+ .|++.+..+. +-+-+.+.++.+
T Consensus 76 di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G--~~v--~~~~eda~r~-~~~~l~~~~~~~ 150 (363)
T TIGR02090 76 DIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHG--LIV--EFSAEDATRT-DIDFLIKVFKRA 150 (363)
T ss_pred HHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--CEE--EEEEeecCCC-CHHHHHHHHHHH
Confidence 4666778899987553 2222 233444555566553 444 4554444332 233444555555
Q ss_pred HhCCCCeEEEEcCC----ChhHHHHHHHHHHhhcCCCEEEEeC
Q 025860 143 ESCKRVVSVGINCT----PPRFISGLILIIKKVTAKPILIYPN 181 (247)
Q Consensus 143 ~~~~~~~avG~NC~----~p~~~~~~l~~l~~~~~~pl~vyPN 181 (247)
.+ .+++.|.+-=+ .|+.+..+++.+++..+.||.+...
T Consensus 151 ~~-~g~~~i~l~DT~G~~~P~~v~~li~~l~~~~~~~l~~H~H 192 (363)
T TIGR02090 151 EE-AGADRINIADTVGVLTPQKMEELIKKLKENVKLPISVHCH 192 (363)
T ss_pred Hh-CCCCEEEEeCCCCccCHHHHHHHHHHHhcccCceEEEEec
Confidence 55 57777665443 3999999999998876677766554
No 365
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=60.04 E-value=1.3e+02 Score=26.91 Aligned_cols=103 Identities=11% Similarity=0.005 Sum_probs=59.3
Q ss_pred HHHHHHhcCCCCEEEEec-CCCHHHHH----HHHHHHHhhCCCCcEEEEEEEcC-----CCcc---cCCCcHHHHHHHHH
Q 025860 77 RRVQVLVESAPDLIAFET-IPNKIEAQ----AYAELLEEENIKIPAWFSFNSKD-----GVNV---VSGDSLLECASIAE 143 (247)
Q Consensus 77 ~q~~~l~~~gvD~i~~ET-~~~~~E~~----aa~~~~~~~~~~~pv~is~~~~~-----~~~l---~~G~~~~~~~~~~~ 143 (247)
+.++..+++|++.+.+-- .-+.+|-. .+++.+++.+ . .+-.-+-. +... .+-++++++.+...
T Consensus 88 e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~g--v--~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~ 163 (282)
T TIGR01859 88 ESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKG--V--SVEAELGTLGGIEDGVDEKEAELADPDEAEQFVK 163 (282)
T ss_pred HHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcC--C--EEEEeeCCCcCccccccccccccCCHHHHHHHHH
Confidence 355556678999888763 33344333 3333444432 3 23322211 1100 12358899988776
Q ss_pred hCCCCeEEEEcCC--C------hhHHHHHHHHHHhhcCCCEEEEeCCCC
Q 025860 144 SCKRVVSVGINCT--P------PRFISGLILIIKKVTAKPILIYPNSGE 184 (247)
Q Consensus 144 ~~~~~~avG~NC~--~------p~~~~~~l~~l~~~~~~pl~vyPNaG~ 184 (247)
. .++|.+++.++ + |..=.+.|+.+++..++||.+.--+|.
T Consensus 164 ~-tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi 211 (282)
T TIGR01859 164 E-TGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGI 211 (282)
T ss_pred H-HCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCC
Confidence 5 48999887753 2 444466788888888899866655554
No 366
>PRK08005 epimerase; Validated
Probab=59.83 E-value=1.1e+02 Score=26.31 Aligned_cols=80 Identities=15% Similarity=0.168 Sum_probs=46.9
Q ss_pred HHHHHhcCCCCEEEE--ecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcC
Q 025860 78 RVQVLVESAPDLIAF--ETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINC 155 (247)
Q Consensus 78 q~~~l~~~gvD~i~~--ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC 155 (247)
.++.|.++|+|.|.| |+-.++ ..+++.+|+.+ ..+.+++. .+++++.....+.....+..+.+|=
T Consensus 73 ~i~~~~~~gad~It~H~Ea~~~~---~~~l~~Ik~~G--~k~GlAln--------P~Tp~~~i~~~l~~vD~VlvMsV~P 139 (210)
T PRK08005 73 WLPWLAAIRPGWIFIHAESVQNP---SEILADIRAIG--AKAGLALN--------PATPLLPYRYLALQLDALMIMTSEP 139 (210)
T ss_pred HHHHHHHhCCCEEEEcccCccCH---HHHHHHHHHcC--CcEEEEEC--------CCCCHHHHHHHHHhcCEEEEEEecC
Confidence 556677889998875 654443 45667778764 55565553 4677777776654433344444544
Q ss_pred C--ChhHHHHHHHHHHh
Q 025860 156 T--PPRFISGLILIIKK 170 (247)
Q Consensus 156 ~--~p~~~~~~l~~l~~ 170 (247)
. +-..+...++++++
T Consensus 140 Gf~GQ~f~~~~~~KI~~ 156 (210)
T PRK08005 140 DGRGQQFIAAMCEKVSQ 156 (210)
T ss_pred CCccceecHHHHHHHHH
Confidence 3 23445555555544
No 367
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=59.36 E-value=2e+02 Score=29.47 Aligned_cols=134 Identities=18% Similarity=0.211 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEe-----cCCCHHHHHHHHHHHHhhC---CCCcEEEEEEEcCCCcccCCCcHHHHH
Q 025860 68 VETLKDFHRRRVQVLVESAPDLIAFE-----TIPNKIEAQAYAELLEEEN---IKIPAWFSFNSKDGVNVVSGDSLLECA 139 (247)
Q Consensus 68 ~~e~~~~~~~q~~~l~~~gvD~i~~E-----T~~~~~E~~aa~~~~~~~~---~~~pv~is~~~~~~~~l~~G~~~~~~~ 139 (247)
.+++...|.+.++.|.++||+.|-|. +-....+..++.++.+... .+.++++...|. ++.+..
T Consensus 173 l~~L~~~y~~~l~~L~~~G~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~ki~l~tyFg---------~~~~~~ 243 (750)
T TIGR01371 173 LEKLLPVYKEVLKKLAEAGATWVQIDEPALVTDLSKEDLAAFKEAYTELSEALSGLKLLLQTYFD---------SVGDAL 243 (750)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEeeCchhcCCCCHHHHHHHHHHHHHHHhccCCceEEEECCCC---------chHHHH
Confidence 36788899999999999999988554 2222235555555554431 134556655542 245566
Q ss_pred HHHHhCCCCeEEEEcCC-ChhHHHHHHHHHHhhc-CCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHc-CC
Q 025860 140 SIAESCKRVVSVGINCT-PPRFISGLILIIKKVT-AKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEV-GA 216 (247)
Q Consensus 140 ~~~~~~~~~~avG~NC~-~p~~~~~~l~~l~~~~-~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~ 216 (247)
..+.+ ..+++||+-++ +++.+. .+. .... ++.|++ |. .|+. +.|.. ++++..+..++..+. +-
T Consensus 244 ~~l~~-lpvd~l~lD~v~~~~~L~-~~~--~~~~~~k~L~~----GV-IDgr-niw~~----d~~~~~~~l~~~~~~~~~ 309 (750)
T TIGR01371 244 EALVS-LPVKGIGLDFVHGKGTLE-LVK--AGFPEDKVLSA----GV-IDGR-NIWRN----DLEASLSLLKKLLAHVGK 309 (750)
T ss_pred HHHHc-CCCCEEEEEeccCcccHH-HHH--hcCCCCCeEEE----EE-Eecc-ccccC----CHHHHHHHHHHHHhhCCC
Confidence 66665 56888888887 443322 221 1111 222221 22 3332 45643 466666666555543 23
Q ss_pred eEEeecCC
Q 025860 217 SLVGGCCR 224 (247)
Q Consensus 217 ~iIGGCCG 224 (247)
-+|+=-||
T Consensus 310 l~v~psCs 317 (750)
T TIGR01371 310 LVVSTSCS 317 (750)
T ss_pred EEEeCCCC
Confidence 56777777
No 368
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism]
Probab=59.34 E-value=1.1e+02 Score=28.09 Aligned_cols=77 Identities=18% Similarity=0.170 Sum_probs=54.4
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCc------HHHHHHHHHhCCCCeEEEE----c
Q 025860 85 SAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDS------LLECASIAESCKRVVSVGI----N 154 (247)
Q Consensus 85 ~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~------~~~~~~~~~~~~~~~avG~----N 154 (247)
.++|++ |++++.-++.+-+++.+.++.-.|+..+...+ ++.|.- +.+.++.+.+..|+..+|+ +
T Consensus 92 ~~~Dvs---~~sel~~arqlse~A~~~Gk~h~VlLmVd~~D---lreG~~~~~~~~l~~~V~eI~~lkGi~~vGlgTnF~ 165 (353)
T COG3457 92 RKVDVS---TVSELDTARQLSEAAVRMGKVHDVLLMVDYGD---LREGQWGFLIEDLEETVEEIQQLKGIHLVGLGTNFP 165 (353)
T ss_pred HhcCeE---EEecHHHHHHHHHHHHHhCcceeEEEEEEccc---ccCcchhhHHHHHHHHHHHHhcCCCceEEeeecccc
Confidence 368855 57778888888888888775567887777655 667744 7778888877778877776 7
Q ss_pred CCC-----hhHHHHHHHH
Q 025860 155 CTP-----PRFISGLILI 167 (247)
Q Consensus 155 C~~-----p~~~~~~l~~ 167 (247)
|-+ |+.+..+++.
T Consensus 166 Cfg~v~PTp~n~~~ll~~ 183 (353)
T COG3457 166 CFGDVLPTPENLESLLQG 183 (353)
T ss_pred cccCcCCCcccHHHHHHH
Confidence 842 5666666653
No 369
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=59.23 E-value=74 Score=30.53 Aligned_cols=64 Identities=16% Similarity=0.223 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCCCCEEEEe-cCC--CHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHH
Q 025860 73 DFHRRRVQVLVESAPDLIAFE-TIP--NKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAE 143 (247)
Q Consensus 73 ~~~~~q~~~l~~~gvD~i~~E-T~~--~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~ 143 (247)
++|.+.++.+.+.|+|.|.+= |.. .+.++..+++++++.. ++| +.|.+.++ .|..++.++..+.
T Consensus 154 ~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~-~~p--i~~H~Hnt----~GlA~AN~laAie 220 (448)
T PRK12331 154 DYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAV-TVP--LEVHTHAT----SGIAEMTYLKAIE 220 (448)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhc-CCe--EEEEecCC----CCcHHHHHHHHHH
Confidence 456668888889999999776 443 4568888888888753 355 56666543 4555555555543
No 370
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=59.00 E-value=62 Score=28.08 Aligned_cols=49 Identities=20% Similarity=0.297 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCEE-----EEecCCCHHHHHHHHHHHHhhCCCCcEEEEEE
Q 025860 67 TVETLKDFHRRRVQVLVESAPDLI-----AFETIPNKIEAQAYAELLEEENIKIPAWFSFN 122 (247)
Q Consensus 67 s~~e~~~~~~~q~~~l~~~gvD~i-----~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~ 122 (247)
+.+++.. +++.+...|+|++ .|+. .+..+....++.+++. ++|+++++-
T Consensus 31 ~~ee~~~----~~~~~~~~~aDivE~RlD~l~~-~~~~~~~~~~~~l~~~--~~p~I~T~R 84 (229)
T PRK01261 31 DIKEMKE----RFKTKVLSDKNLYEIRFDLFHD-HSIESEPEIISALNEM--DIDYIFTYR 84 (229)
T ss_pred CHHHHHH----HHHHhhcCCCCEEEEEeeccCC-CChHHHHHHHHHHhhc--CCCEEEEEc
Confidence 5567665 5566666888886 3444 4566666666767665 689998875
No 371
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=58.98 E-value=90 Score=28.45 Aligned_cols=103 Identities=12% Similarity=0.077 Sum_probs=63.6
Q ss_pred CCcHHHHHHHHHhCCCCeEEEEcCC--C--------hhHHHHHHHHHHhhcCCCEEEEeCCCCccccccccc------cc
Q 025860 132 GDSLLECASIAESCKRVVSVGINCT--P--------PRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEW------VQ 195 (247)
Q Consensus 132 G~~~~~~~~~~~~~~~~~avG~NC~--~--------p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~------~~ 195 (247)
-++++++.+++.. .++|++=+..+ + |+.--..|+.+++..+.||++.--+|.+.+.. +.+ ..
T Consensus 154 ~TdPeeA~~Fv~~-TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~~iPLVLHGgSGip~e~~-~~~~~~g~~~~ 231 (307)
T PRK05835 154 LVNPKEAEQFVKE-SQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDDVR-KSYLDAGGDLK 231 (307)
T ss_pred CCCHHHHHHHHHh-hCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCchHHh-hhhhhhccccc
Confidence 3678999998876 58887666652 2 34456788888888899999988888654310 000 00
Q ss_pred CCCCChHHHHHHHHHHHHcCCeEEeecCCCChHHHHHHHHHhhC
Q 025860 196 NTGVSDEDFVSYVSKWCEVGASLVGGCCRTTPNTIKGIYRTLSN 239 (247)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~G~~iIGGCCGt~P~hI~al~~~l~~ 239 (247)
...-+|. ++.++.++.|++=|==+....-.+++++++.+..
T Consensus 232 ~~~g~~~---e~~~kai~~GI~KiNi~T~l~~a~~~~~~~~~~~ 272 (307)
T PRK05835 232 GSKGVPF---EFLQESVKGGINKVNTDTDLRIAFIAEVRKVANE 272 (307)
T ss_pred cccCCCH---HHHHHHHHcCceEEEeChHHHHHHHHHHHHHHHh
Confidence 0000121 3345566677666665666666777777776643
No 372
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=58.95 E-value=92 Score=28.53 Aligned_cols=96 Identities=7% Similarity=0.068 Sum_probs=51.3
Q ss_pred HHHHHHHhCCCCeEEEEcCC--ChhH-------HHHHHHHHHhhcCCCEEEEe------CCCCcccc----cccccccCC
Q 025860 137 ECASIAESCKRVVSVGINCT--PPRF-------ISGLILIIKKVTAKPILIYP------NSGEFYDA----DRKEWVQNT 197 (247)
Q Consensus 137 ~~~~~~~~~~~~~avG~NC~--~p~~-------~~~~l~~l~~~~~~pl~vyP------NaG~~~d~----~~~~~~~~~ 197 (247)
+.+....+..+++.|=+|+. +|+. +..+++.+.+..+.||++-- |.-..... ..+.-.-.
T Consensus 79 ~~Ak~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLIn- 157 (319)
T PRK04452 79 AWAKKCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLG- 157 (319)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEE-
Confidence 33334432257788888853 3532 66777777777778875431 11100000 00000000
Q ss_pred CCChHHHHHHHHHHHHcCCeEEeecCCCChHHHHHHHHHh
Q 025860 198 GVSDEDFVSYVSKWCEVGASLVGGCCRTTPNTIKGIYRTL 237 (247)
Q Consensus 198 ~~~~~~~~~~~~~~~~~G~~iIGGCCGt~P~hI~al~~~l 237 (247)
..+.+.|.+.+.-.++.|+.+|+-| |.+|..+.++.
T Consensus 158 Sat~en~~~i~~lA~~y~~~Vva~s----~~Dln~ak~L~ 193 (319)
T PRK04452 158 SAEEDNYKKIAAAAMAYGHAVIAWS----PLDINLAKQLN 193 (319)
T ss_pred ECCHHHHHHHHHHHHHhCCeEEEEc----HHHHHHHHHHH
Confidence 1455667666666677899888876 66666655543
No 373
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=58.56 E-value=1e+02 Score=25.31 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCCCEEEE-----ecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEc
Q 025860 75 HRRRVQVLVESAPDLIAF-----ETIPNKIEAQAYAELLEEENIKIPAWFSFNSK 124 (247)
Q Consensus 75 ~~~q~~~l~~~gvD~i~~-----ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~ 124 (247)
+.+.++.+.++|+|.|-+ .+.++...-..+++.+++.. +.|+.+-+.+.
T Consensus 14 ~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~-~~~~~v~l~~~ 67 (211)
T cd00429 14 LGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHT-DLPLDVHLMVE 67 (211)
T ss_pred HHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhC-CCcEEEEeeeC
Confidence 455888899999999977 33333311112333344432 35665555554
No 374
>PRK13753 dihydropteroate synthase; Provisional
Probab=58.44 E-value=1.4e+02 Score=26.82 Aligned_cols=111 Identities=14% Similarity=0.104 Sum_probs=57.9
Q ss_pred EEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEecC---CCH------HHHH---HHHHHH
Q 025860 41 VAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFETI---PNK------IEAQ---AYAELL 108 (247)
Q Consensus 41 VaGsiGP~g~~l~~g~eY~g~y~~~~s~~e~~~~~~~q~~~l~~~gvD~i~~ET~---~~~------~E~~---aa~~~~ 108 (247)
|.|-+-=+..++.||..| .+.+.+.+ +++.+++.|+|+|=+=.. |.. +|++ .+++.+
T Consensus 4 iMGIlNvTPDSFsDGg~~-------~~~d~a~~----~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l 72 (279)
T PRK13753 4 VFGILNLTEDSFFDESRR-------LDPAGAVT----AAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDAL 72 (279)
T ss_pred EEEEEeCCCCCCCCCCCC-------CCHHHHHH----HHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 444443344455555432 34555555 788888999999955432 333 3777 556666
Q ss_pred HhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCC---ChhHHHHHHHHHHhhcCCCEEEEeCCC
Q 025860 109 EEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT---PPRFISGLILIIKKVTAKPILIYPNSG 183 (247)
Q Consensus 109 ~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~---~p~~~~~~l~~l~~~~~~pl~vyPNaG 183 (247)
++. . +.+|+... . .+.++...+ .|++. ||=. ....|.+++. + .+.|+++.=+.|
T Consensus 73 ~~~--~--~~ISIDT~------~----~~va~~al~-aGadi--INDVsg~~d~~~~~vva---~-~~~~vVlmH~~~ 129 (279)
T PRK13753 73 SDQ--M--HRVSIDSF------Q----PETQRYALK-RGVGY--LNDIQGFPDPALYPDIA---E-ADCRLVVMHSAQ 129 (279)
T ss_pred HhC--C--CcEEEECC------C----HHHHHHHHH-cCCCE--EEeCCCCCchHHHHHHH---H-cCCCEEEEecCC
Confidence 543 2 33566421 1 233333334 36664 3432 2223333333 2 368888877654
No 375
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=58.32 E-value=1.4e+02 Score=28.35 Aligned_cols=105 Identities=12% Similarity=0.168 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEecCCC-------HHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHH
Q 025860 67 TVETLKDFHRRRVQVLVESAPDLIAFETIPN-------KIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECA 139 (247)
Q Consensus 67 s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~-------~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~ 139 (247)
+.+.+.+.|... ..+.|++++|-..- +.+-....+.++.. +.||++-..... .+.++...+
T Consensus 63 ~~~~i~~~~~~~-----~~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l--~~pVILV~~~~~-----~~~t~~al~ 130 (449)
T TIGR00379 63 SEAQIQECFHRH-----SKGTDYSIIEGVRGLYDGISAITDYGSTASVAKAL--DAPIVLVMNCQR-----LSRSAAAIV 130 (449)
T ss_pred CHHHHHHHHHHh-----cccCCEEEEecCCccccCCCCCCCCccHHHHHHHh--CCCEEEEECCch-----HHHHHHHHH
Confidence 456666655432 24679999996521 11223455677877 589998776431 122334332
Q ss_pred HHH---HhCCCCeEEEEcCCCh-hHHHHHHHHHHhhcCCC-EEEEeCCC
Q 025860 140 SIA---ESCKRVVSVGINCTPP-RFISGLILIIKKVTAKP-ILIYPNSG 183 (247)
Q Consensus 140 ~~~---~~~~~~~avG~NC~~p-~~~~~~l~~l~~~~~~p-l~vyPNaG 183 (247)
..+ .....+.+|-+|...+ .+.....+.+.+..+.| +++-|.-.
T Consensus 131 ~~~~~~~~~i~i~GvIlN~v~~~~~~~~~~~~i~~~~gipvLG~IP~~~ 179 (449)
T TIGR00379 131 LGYRSFDPGVKLKGVILNRVGSERHLEKLKIAVEPLRGIPILGVIPRQQ 179 (449)
T ss_pred HHHHhhCCCCCEEEEEEECCCCHHHHHHHHHHHHHhCCCCEEEEecCcc
Confidence 212 2223567888999854 34444455566656788 55666553
No 376
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=58.30 E-value=24 Score=37.89 Aligned_cols=65 Identities=15% Similarity=0.276 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhcCCCCEEEEecC---CCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHH
Q 025860 72 KDFHRRRVQVLVESAPDLIAFETI---PNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAE 143 (247)
Q Consensus 72 ~~~~~~q~~~l~~~gvD~i~~ET~---~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~ 143 (247)
.++|.+.++.|.+.|+|.|.|=-+ -.+.++...++.+++.. ++|+ .+.+.++ .|..+...+..+.
T Consensus 688 l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~~-~~pi--~~H~Hdt----~Gla~an~laA~e 755 (1143)
T TIGR01235 688 LKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREKT-DLPI--HFHTHDT----SGIAVASMLAAVE 755 (1143)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHhc-CCeE--EEEECCC----CCcHHHHHHHHHH
Confidence 467788888999999999988643 34567778888888754 5665 4555443 4666666666554
No 377
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=58.29 E-value=39 Score=28.17 Aligned_cols=53 Identities=23% Similarity=0.256 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCc
Q 025860 73 DFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVN 128 (247)
Q Consensus 73 ~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~ 128 (247)
..|.+|++++-..|-=+|.|=|-.+-.-+..+++.+++.+ -.++.+|=++++.
T Consensus 97 ~vFsRqveA~g~~GDvLigISTSGNS~nVl~Ai~~Ak~~g---m~vI~ltG~~GG~ 149 (176)
T COG0279 97 EVFSRQVEALGQPGDVLIGISTSGNSKNVLKAIEAAKEKG---MTVIALTGKDGGK 149 (176)
T ss_pred HHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHcC---CEEEEEecCCCcc
Confidence 4678899999988855667889888888888888888754 3555777665554
No 378
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=58.16 E-value=1e+02 Score=27.49 Aligned_cols=85 Identities=15% Similarity=0.118 Sum_probs=49.7
Q ss_pred HhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHh-CCCCe-EEEEcCC-C-
Q 025860 82 LVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAES-CKRVV-SVGINCT-P- 157 (247)
Q Consensus 82 l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~-~~~~~-avG~NC~-~- 157 (247)
+.++|||-+++=-+| ++|.....+.+++.+.+.-.+++ -++-.+-++.+.+ ..+.. .+..|-+ +
T Consensus 118 ~~~~GvdGlivpDLP-~ee~~~~~~~~~~~gi~~I~lva-----------Ptt~~~rl~~i~~~a~GFiY~vs~~GvTG~ 185 (265)
T COG0159 118 AKEAGVDGLLVPDLP-PEESDELLKAAEKHGIDPIFLVA-----------PTTPDERLKKIAEAASGFIYYVSRMGVTGA 185 (265)
T ss_pred HHHcCCCEEEeCCCC-hHHHHHHHHHHHHcCCcEEEEeC-----------CCCCHHHHHHHHHhCCCcEEEEecccccCC
Confidence 457999999998888 77777788888876532222222 1222233333332 12322 3444432 2
Q ss_pred ----hhHHHHHHHHHHhhcCCCEEE
Q 025860 158 ----PRFISGLILIIKKVTAKPILI 178 (247)
Q Consensus 158 ----p~~~~~~l~~l~~~~~~pl~v 178 (247)
...+..+++++++.++.|+++
T Consensus 186 ~~~~~~~~~~~v~~vr~~~~~Pv~v 210 (265)
T COG0159 186 RNPVSADVKELVKRVRKYTDVPVLV 210 (265)
T ss_pred CcccchhHHHHHHHHHHhcCCCeEE
Confidence 224678888888888888754
No 379
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=57.82 E-value=1.5e+02 Score=27.11 Aligned_cols=94 Identities=17% Similarity=0.164 Sum_probs=52.6
Q ss_pred HHHHHHhcCC--CCEEEEec-CCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEE
Q 025860 77 RRVQVLVESA--PDLIAFET-IPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGI 153 (247)
Q Consensus 77 ~q~~~l~~~g--vD~i~~ET-~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~ 153 (247)
+++..|+++| +|+|.+.+ -.+-..+...++.+++.. +.|.++.=. + + +.+.+. .+.+ .|+++|=+
T Consensus 97 ~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~-p~~~vi~Gn------V--~-t~e~a~-~l~~-aGad~I~V 164 (321)
T TIGR01306 97 EFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTHL-PDSFVIAGN------V--G-TPEAVR-ELEN-AGADATKV 164 (321)
T ss_pred HHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHhC-CCCEEEEec------C--C-CHHHHH-HHHH-cCcCEEEE
Confidence 4788889988 79999997 334445555677777654 345333221 1 1 344444 4444 47777633
Q ss_pred c------C--------CChhHHHHHHHHHHhhcCCCEEEEeCCCC
Q 025860 154 N------C--------TPPRFISGLILIIKKVTAKPILIYPNSGE 184 (247)
Q Consensus 154 N------C--------~~p~~~~~~l~~l~~~~~~pl~vyPNaG~ 184 (247)
- | ..+.....++...++..+.| +..++|.
T Consensus 165 ~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~~~p--VIadGGI 207 (321)
T TIGR01306 165 GIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKP--IIADGGI 207 (321)
T ss_pred CCCCCccccceeeeccCCCchHHHHHHHHHHhcCCe--EEEECCc
Confidence 3 3 11212235566666666667 4555553
No 380
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=57.65 E-value=1.1e+02 Score=26.93 Aligned_cols=78 Identities=6% Similarity=-0.101 Sum_probs=48.9
Q ss_pred HHHHHhcCCCCEEEEecC---CCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEc
Q 025860 78 RVQVLVESAPDLIAFETI---PNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGIN 154 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~---~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~N 154 (247)
.++.+...|-|++++..- .+..++..++.+++.. +.+.++-+. +. +...+ ..+.+ .|+++|-+-
T Consensus 32 ~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~--g~~~lVRvp--------~~-~~~~i-~r~LD-~Ga~giivP 98 (256)
T PRK10558 32 TTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGS--ASAPVVRVP--------TN-EPVII-KRLLD-IGFYNFLIP 98 (256)
T ss_pred HHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhc--CCCcEEECC--------CC-CHHHH-HHHhC-CCCCeeeec
Confidence 566677799999999854 4566666666666654 466666552 22 23333 33444 477777776
Q ss_pred CC-ChhHHHHHHHHH
Q 025860 155 CT-PPRFISGLILII 168 (247)
Q Consensus 155 C~-~p~~~~~~l~~l 168 (247)
.. .++.+..+++..
T Consensus 99 ~v~tae~a~~~v~a~ 113 (256)
T PRK10558 99 FVETAEEARRAVAST 113 (256)
T ss_pred CcCCHHHHHHHHHHc
Confidence 65 577777766544
No 381
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=57.61 E-value=1e+02 Score=26.68 Aligned_cols=139 Identities=14% Similarity=0.151 Sum_probs=75.9
Q ss_pred HHHHHhcCCCCEEEEecCCCHHHHHHHHH-----HHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEE
Q 025860 78 RVQVLVESAPDLIAFETIPNKIEAQAYAE-----LLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVG 152 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~~E~~aa~~-----~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG 152 (247)
.+.+..++|+=.|=+|++-++.+.+..+. .+|+...+-||.|+- ..+-++.+.+ .+++.|-
T Consensus 38 mA~Aa~~gGAvgiR~~gv~dIkai~~~v~vPIIGIiKrd~~~s~v~ITp-------------tlkeVd~L~~-~Ga~IIA 103 (229)
T COG3010 38 MALAAEQGGAVGIRIEGVEDIKAIRAVVDVPIIGIIKRDYPDSPVRITP-------------TLKEVDALAE-AGADIIA 103 (229)
T ss_pred HHHHHHhCCcceEeecchhhHHHHHhhCCCCeEEEEecCCCCCCceecc-------------cHHHHHHHHH-CCCcEEE
Confidence 55566789999999999888877665443 112222233444333 2334445555 5888888
Q ss_pred EcCCC---hh-HHHHHHHHHHhhcCCCEEEEeCCCCcccc------------cc-cccccCCCCChHHHHHHHHHHHHcC
Q 025860 153 INCTP---PR-FISGLILIIKKVTAKPILIYPNSGEFYDA------------DR-KEWVQNTGVSDEDFVSYVSKWCEVG 215 (247)
Q Consensus 153 ~NC~~---p~-~~~~~l~~l~~~~~~pl~vyPNaG~~~d~------------~~-~~~~~~~~~~~~~~~~~~~~~~~~G 215 (247)
+-|+. |. .+..+++..+. .-..++.+...+.++ ++ ..|........+.=.++++++.+.|
T Consensus 104 ~DaT~R~RP~~~~~~~i~~~k~---~~~l~MAD~St~ee~l~a~~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~~~ 180 (229)
T COG3010 104 FDATDRPRPDGDLEELIARIKY---PGQLAMADCSTFEEGLNAHKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSDAG 180 (229)
T ss_pred eecccCCCCcchHHHHHHHhhc---CCcEEEeccCCHHHHHHHHHcCCcEEecccccccCCCCCCCCCcHHHHHHHHhCC
Confidence 88873 65 66666665321 124455555432111 00 0111100000111235677788899
Q ss_pred CeEEeecCCCChHHHHHH
Q 025860 216 ASLVGGCCRTTPNTIKGI 233 (247)
Q Consensus 216 ~~iIGGCCGt~P~hI~al 233 (247)
..+|.=-==.||+.-+..
T Consensus 181 ~~vIAEGr~~tP~~Ak~a 198 (229)
T COG3010 181 CRVIAEGRYNTPEQAKKA 198 (229)
T ss_pred CeEEeeCCCCCHHHHHHH
Confidence 999985555677765543
No 382
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=57.60 E-value=81 Score=26.63 Aligned_cols=63 Identities=24% Similarity=0.126 Sum_probs=42.8
Q ss_pred HHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCCChhHHHHHHHHHHhhcCCCEEE
Q 025860 107 LLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTPPRFISGLILIIKKVTAKPILI 178 (247)
Q Consensus 107 ~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~~p~~~~~~l~~l~~~~~~pl~v 178 (247)
++++. ..-+++|-...+.+-+.+|..+.++++.+.. .|+.++=+|+ ++ .++.+++..++|++.
T Consensus 3 ~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~~-~G~~~~~~~~--~~----~~~~i~~~~~iPil~ 65 (219)
T cd04729 3 LLEQL--KGGLIVSCQALPGEPLHSPEIMAAMALAAVQ-GGAVGIRANG--VE----DIRAIRARVDLPIIG 65 (219)
T ss_pred HHHHh--cCCeEEEccCCCCCCcCcHHHHHHHHHHHHH-CCCeEEEcCC--HH----HHHHHHHhCCCCEEE
Confidence 45554 2457788887788889999999999998876 5776654333 33 344445556889864
No 383
>PF03481 SUA5: Putative GTP-binding controlling metal-binding; InterPro: IPR005145 The function of this domain is unknown, it is found in P32579 from SWISSPROT and its relatives. It is found C-terminal to the IPR006070 from INTERPRO.; PDB: 2EQA_A 3AJE_A 4E1B_A 2YV4_A.
Probab=57.59 E-value=16 Score=28.31 Aligned_cols=45 Identities=22% Similarity=0.091 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhh
Q 025860 67 TVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEE 111 (247)
Q Consensus 67 s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~ 111 (247)
+.++........++.|=+.|+|.|++|.+++-.+..++..-++++
T Consensus 79 d~~~~A~~Lf~~LR~~D~~~~~~I~ie~~~~~~~g~Ai~dRL~RA 123 (125)
T PF03481_consen 79 DPEEAARNLFAALRELDELGVDLILIEGPPETGLGLAIMDRLRRA 123 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHTT-SEEEEEEESGCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhcCCCEEEEeeCCCcCcHHHHHHHHHHh
Confidence 667776666668888877899999999999887888877766654
No 384
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=57.44 E-value=1.2e+02 Score=25.88 Aligned_cols=100 Identities=14% Similarity=0.129 Sum_probs=50.8
Q ss_pred HHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCCC
Q 025860 78 RVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTP 157 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~~ 157 (247)
+++...++|+||++ .|.+.+ ..++.+++. ++|++ +.-.++.|+....+ .|++.|-+-
T Consensus 79 ~a~~a~~aGA~Fiv---sP~~~~--~vi~~a~~~--~i~~i-----------PG~~TptEi~~a~~--~Ga~~vKlF--- 135 (212)
T PRK05718 79 QLAQAIEAGAQFIV---SPGLTP--PLLKAAQEG--PIPLI-----------PGVSTPSELMLGME--LGLRTFKFF--- 135 (212)
T ss_pred HHHHHHHcCCCEEE---CCCCCH--HHHHHHHHc--CCCEe-----------CCCCCHHHHHHHHH--CCCCEEEEc---
Confidence 45555667777775 344443 444445543 34544 12256677655443 467766662
Q ss_pred hhH-H--HHHHHHHHhhc-CCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEEee
Q 025860 158 PRF-I--SGLILIIKKVT-AKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGG 221 (247)
Q Consensus 158 p~~-~--~~~l~~l~~~~-~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iIGG 221 (247)
|.. + ...++.++... +.| +.|-+| +++ +.+.+|+++|..++||
T Consensus 136 Pa~~~gg~~~lk~l~~p~p~~~--~~ptGG---------------V~~----~ni~~~l~ag~v~~vg 182 (212)
T PRK05718 136 PAEASGGVKMLKALAGPFPDVR--FCPTGG---------------ISP----ANYRDYLALPNVLCIG 182 (212)
T ss_pred cchhccCHHHHHHHhccCCCCe--EEEeCC---------------CCH----HHHHHHHhCCCEEEEE
Confidence 211 1 23444443221 122 223333 344 4667799999766766
No 385
>PRK15447 putative protease; Provisional
Probab=57.35 E-value=1.1e+02 Score=27.55 Aligned_cols=46 Identities=22% Similarity=0.197 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEEe-cC------CCHHHHHHHHHHHHhhCCCCcEEEEE
Q 025860 70 TLKDFHRRRVQVLVESAPDLIAFE-TI------PNKIEAQAYAELLEEENIKIPAWFSF 121 (247)
Q Consensus 70 e~~~~~~~q~~~l~~~gvD~i~~E-T~------~~~~E~~aa~~~~~~~~~~~pv~is~ 121 (247)
.+.+||. ++.+.|+|.|.+- .. .+.+|++.+++.+++. ++.+++++
T Consensus 16 ~~~~~~~----~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~--gkkvyva~ 68 (301)
T PRK15447 16 TVRDFYQ----RAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAA--GKEVVLST 68 (301)
T ss_pred CHHHHHH----HHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHc--CCEEEEEe
Confidence 3445554 2346799999884 32 5679999999999987 47888866
No 386
>TIGR00035 asp_race aspartate racemase.
Probab=57.28 E-value=1.2e+02 Score=25.89 Aligned_cols=135 Identities=19% Similarity=0.155 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCC
Q 025860 67 TVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCK 146 (247)
Q Consensus 67 s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~ 146 (247)
+.++...+..+-++.|.+.|+|++++=..+ +...++.+++.. ++|++ ++.+++.......
T Consensus 56 ~~~~~~~~l~~~~~~L~~~g~d~iviaCNT----ah~~~~~l~~~~-~iPii---------------~i~~~~~~~~~~~ 115 (229)
T TIGR00035 56 GEDRPRPILIDIAVKLENAGADFIIMPCNT----AHKFAEDIQKAI-GIPLI---------------SMIEETAEAVKED 115 (229)
T ss_pred CcchHHHHHHHHHHHHHHcCCCEEEECCcc----HHHHHHHHHHhC-CCCEe---------------chHHHHHHHHHHc
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCC----CCChHHHHHHHHHHHHcCCeE-Eee
Q 025860 147 RVVSVGINCTPPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNT----GVSDEDFVSYVSKWCEVGASL-VGG 221 (247)
Q Consensus 147 ~~~avG~NC~~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~G~~i-IGG 221 (247)
+..-||+=.+....-....+..-...+.-+.. |.......-....+..-. ....+.+.+.++++.+.|+.. |=|
T Consensus 116 ~~~~VgvLaT~~T~~s~~y~~~l~~~g~~v~~-p~~~~~~~i~~~i~~~~~~g~~~~~~~~l~~~~~~l~~~gad~iILg 194 (229)
T TIGR00035 116 GVKKAGLLGTKGTMKDGVYEREMKKHGIEIVT-PDKEEQEAIMSGIYDEVKAGNIELGRELLLKIAKELEERGAEGIILG 194 (229)
T ss_pred CCCEEEEEecHHHHHhHHHHHHHHHCCCEEEC-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCEEEEe
Q ss_pred c
Q 025860 222 C 222 (247)
Q Consensus 222 C 222 (247)
|
T Consensus 195 C 195 (229)
T TIGR00035 195 C 195 (229)
T ss_pred C
No 387
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=57.19 E-value=2.1e+02 Score=29.26 Aligned_cols=111 Identities=9% Similarity=0.060 Sum_probs=65.1
Q ss_pred CCHHH---HHHHHHHHHHHHhcCCCCEEEEecC---------------------CCH----HHHHHHHHHHHhh-CCCCc
Q 025860 66 ITVET---LKDFHRRRVQVLVESAPDLIAFETI---------------------PNK----IEAQAYAELLEEE-NIKIP 116 (247)
Q Consensus 66 ~s~~e---~~~~~~~q~~~l~~~gvD~i~~ET~---------------------~~~----~E~~aa~~~~~~~-~~~~p 116 (247)
.|.+| +.+.|..-++.+.++|.|.|=+=.- .++ .=+..+++++++. +.+.|
T Consensus 541 mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~ 620 (765)
T PRK08255 541 MTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKP 620 (765)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCe
Confidence 55544 5667888888888899999955322 122 2233455556654 33567
Q ss_pred EEEEEEEcCCCcccCCCcHHHHHHH---HHhCCCCeEEEEcCC--Ch--------hHHHHHHHHHHhhcCCCEEEE
Q 025860 117 AWFSFNSKDGVNVVSGDSLLECASI---AESCKRVVSVGINCT--PP--------RFISGLILIIKKVTAKPILIY 179 (247)
Q Consensus 117 v~is~~~~~~~~l~~G~~~~~~~~~---~~~~~~~~avG~NC~--~p--------~~~~~~l~~l~~~~~~pl~vy 179 (247)
+.+-++..+ ....|.++++.+.. +.+ .+++.|-|-.. .. .......+.+++..+.|+++-
T Consensus 621 v~~ri~~~~--~~~~g~~~~~~~~~~~~l~~-~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~ 693 (765)
T PRK08255 621 MSVRISAHD--WVEGGNTPDDAVEIARAFKA-AGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAV 693 (765)
T ss_pred eEEEEcccc--ccCCCCCHHHHHHHHHHHHh-cCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEe
Confidence 877776533 23356677765543 444 47887766532 11 122455567777778887653
No 388
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=56.72 E-value=1.1e+02 Score=28.56 Aligned_cols=142 Identities=11% Similarity=0.066 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEecCCC----------------------HHHHHHHHHHHH
Q 025860 52 LADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPN----------------------KIEAQAYAELLE 109 (247)
Q Consensus 52 l~~g~eY~g~y~~~~s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~----------------------~~E~~aa~~~~~ 109 (247)
+.+||-|.|+ +.+.+.+ +++ ..++|+|.+|.+.. .+.++.++..++
T Consensus 1 Ig~~sGf~gD-----~~~a~~~----l~~---~g~~d~l~~d~LaE~tma~~~~~~~~~p~~gY~~~~~~~L~~~L~~~~ 68 (362)
T PF07287_consen 1 IGNGSGFWGD-----RPDAAVR----LAR---GGDVDYLVGDYLAERTMAILARAKRKDPTKGYAPDFVRDLRPLLPAAA 68 (362)
T ss_pred CeeecccccC-----cHHHHHH----HHh---cCCCCEEEEecHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHH
Q ss_pred hhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCCChhHHHHHHHHHHhhcCCCEEEEeCCCCccccc
Q 025860 110 EENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTPPRFISGLILIIKKVTAKPILIYPNSGEFYDAD 189 (247)
Q Consensus 110 ~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~ 189 (247)
+. ++|+++.. +-+ ++....+.++.+....+.. +=|-...-+.....++++.. ....+--...........
T Consensus 69 ~~--gIkvI~Na-----Gg~-np~~~a~~v~eia~e~Gl~-lkvA~V~gDd~~~~v~~~~~-~g~~~~~l~~~~~l~~~~ 138 (362)
T PF07287_consen 69 EK--GIKVITNA-----GGL-NPAGCADIVREIARELGLS-LKVAVVYGDDLKDEVKELLA-EGETIRPLDTGPPLSEWD 138 (362)
T ss_pred hC--CCCEEEeC-----CCC-CHHHHHHHHHHHHHhcCCC-eeEEEEECccchHhHHHHHh-CCCCCccCCCCCCcchhc
Q ss_pred ccccccCCCCChHHHHHHHHHHHHcCCeEE
Q 025860 190 RKEWVQNTGVSDEDFVSYVSKWCEVGASLV 219 (247)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~iI 219 (247)
.....-+..+..+.+.+ .++.|+.||
T Consensus 139 ~~~~~a~aylGa~pI~~----AL~~GADIV 164 (362)
T PF07287_consen 139 DRIVSANAYLGAEPIVE----ALEAGADIV 164 (362)
T ss_pred cccceEEEecChHHHHH----HHHcCCCEE
No 389
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=56.71 E-value=24 Score=36.46 Aligned_cols=72 Identities=18% Similarity=0.260 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEecCCCHHHHHHHH---HHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCC
Q 025860 71 LKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYA---ELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKR 147 (247)
Q Consensus 71 ~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~---~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~ 147 (247)
-.++|...++-|.++|+-+|.+-.|.-+.--.++. .++|+.. ++|+-+-.. | + +|..+...+..+. .|
T Consensus 692 ~L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~AA~~Li~aLr~~~-dlPIHlHTH--D---T-sG~~~at~~aA~~--AG 762 (1149)
T COG1038 692 TLDYYVKLAKELEKAGAHILAIKDMAGLLKPAAAYRLISALRETV-DLPIHLHTH--D---T-SGNGVATYLAAVE--AG 762 (1149)
T ss_pred cHHHHHHHHHHHHhcCCcEEEehhhhhccCHHHHHHHHHHHHHhc-CCceEEecc--C---C-CccHHHHHHHHHH--cC
Confidence 34789999999999999999998887765545544 4556654 788875432 2 2 6776666655443 24
Q ss_pred CeEE
Q 025860 148 VVSV 151 (247)
Q Consensus 148 ~~av 151 (247)
+|+|
T Consensus 763 vDiv 766 (1149)
T COG1038 763 VDIV 766 (1149)
T ss_pred Cchh
Confidence 5544
No 390
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=56.61 E-value=51 Score=31.84 Aligned_cols=65 Identities=18% Similarity=0.218 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhcCCCCEEEEec-C--CCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHH
Q 025860 72 KDFHRRRVQVLVESAPDLIAFET-I--PNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAE 143 (247)
Q Consensus 72 ~~~~~~q~~~l~~~gvD~i~~ET-~--~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~ 143 (247)
.++|.+.++.+.+.|+|.|.+-- . -.+.++...++++++.. ++| +.|.+.++ .|..+...+..+.
T Consensus 162 ~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~~-~~p--i~~H~Hnt----~GlA~An~laAie 229 (468)
T PRK12581 162 LNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAMT-NLP--LIVHTHAT----SGISQMTYLAAVE 229 (468)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHhcc-CCe--EEEEeCCC----CccHHHHHHHHHH
Confidence 36778889999999999998863 2 45678888888888743 455 45665543 4656666665554
No 391
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=56.54 E-value=1.3e+02 Score=25.98 Aligned_cols=153 Identities=18% Similarity=0.109 Sum_probs=89.3
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhC
Q 025860 66 ITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESC 145 (247)
Q Consensus 66 ~s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~ 145 (247)
++.++... .++...+. +|+|=+-|.--..|-.-+++.+|+..++.++++-+-..|.|. ++ ++...+
T Consensus 13 ~~l~~Ai~----~a~~v~~~-~diiEvGTpLik~eG~~aV~~lr~~~pd~~IvAD~Kt~D~G~------~e--~~ma~~- 78 (217)
T COG0269 13 LDLEEAIE----IAEEVADY-VDIIEVGTPLIKAEGMRAVRALRELFPDKIIVADLKTADAGA------IE--ARMAFE- 78 (217)
T ss_pred cCHHHHHH----HHHHhhhc-ceEEEeCcHHHHHhhHHHHHHHHHHCCCCeEEeeeeecchhH------HH--HHHHHH-
Confidence 35555544 44444544 888877788878899999999999877899998776554332 22 222223
Q ss_pred CCCeEEEEcCC-ChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccC----------------CCCCh-HHHHHH
Q 025860 146 KRVVSVGINCT-PPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQN----------------TGVSD-EDFVSY 207 (247)
Q Consensus 146 ~~~~avG~NC~-~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~----------------~~~~~-~~~~~~ 207 (247)
.+++.+-+-|. +.+.+...++..++....-.+=.=|...+.+ ...|+.. ...++ .+-.+.
T Consensus 79 aGAd~~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~--~~~~l~~~gvd~~~~H~g~D~q~~G~~~~~~~l~~ 156 (217)
T COG0269 79 AGADWVTVLGAADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQ--RAKWLKELGVDQVILHRGRDAQAAGKSWGEDDLEK 156 (217)
T ss_pred cCCCEEEEEecCCHHHHHHHHHHHHHcCCeEEEEeecCCCHHH--HHHHHHHhCCCEEEEEecccHhhcCCCccHHHHHH
Confidence 58899999997 6778888888776653211111111111100 1122210 01233 244566
Q ss_pred HHHHHHcCCeEEeecCCCChHHHHHHHH
Q 025860 208 VSKWCEVGASLVGGCCRTTPNTIKGIYR 235 (247)
Q Consensus 208 ~~~~~~~G~~iIGGCCGt~P~hI~al~~ 235 (247)
+++..+.|+.+- =..|.+|+.|..+..
T Consensus 157 ik~~~~~g~~vA-VaGGI~~~~i~~~~~ 183 (217)
T COG0269 157 IKKLSDLGAKVA-VAGGITPEDIPLFKG 183 (217)
T ss_pred HHHhhccCceEE-EecCCCHHHHHHHhc
Confidence 777877764441 133789999987753
No 392
>PRK14847 hypothetical protein; Provisional
Probab=56.42 E-value=1.6e+02 Score=27.16 Aligned_cols=77 Identities=8% Similarity=-0.016 Sum_probs=42.9
Q ss_pred HHHHHHhhCC---CCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEE---EcC------CChhHHHHHHHHHHhh
Q 025860 104 YAELLEEENI---KIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVG---INC------TPPRFISGLILIIKKV 171 (247)
Q Consensus 104 a~~~~~~~~~---~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG---~NC------~~p~~~~~~l~~l~~~ 171 (247)
+++.+++.+. ++-+.++|+..|-.++ +=.-+.++++.+....+++-+| ||. ..|..+..+++.+.+.
T Consensus 156 ~v~~Ak~~~~~~~g~~~~V~~~~EDasRa-d~dfL~~~~~~a~~~~ga~r~~a~~i~l~DTVG~~~P~~~~~~i~~l~~~ 234 (333)
T PRK14847 156 GTRQIRALADANPGTQWIYEYSPETFSLA-ELDFAREVCDAVSAIWGPTPQRKMIINLPATVESSTANVYADQIEWMHRS 234 (333)
T ss_pred HHHHHHHhccccCCCceEEEEeeecCCCC-CHHHHHHHHHHHHHHhCCCccCCcEEEeCCccccCCHHHHHHHHHHHHHh
Confidence 3445555432 1224689998876654 3233444555443323444333 553 2488888888888765
Q ss_pred c----CCCEEEEeC
Q 025860 172 T----AKPILIYPN 181 (247)
Q Consensus 172 ~----~~pl~vyPN 181 (247)
. +.||.+...
T Consensus 235 ~~~~~~v~i~~H~H 248 (333)
T PRK14847 235 LARRDCIVLSVHPH 248 (333)
T ss_pred cCCCCCcEEEEEeC
Confidence 4 467776654
No 393
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=56.33 E-value=1.7e+02 Score=27.06 Aligned_cols=144 Identities=16% Similarity=0.090 Sum_probs=76.3
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEecCCCHHHHH-HHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHh
Q 025860 66 ITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQ-AYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAES 144 (247)
Q Consensus 66 ~s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~-aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~ 144 (247)
.+.++..+ .++.|.+.|||.|=+ .+|...+.. ..++.+.+...+ .-++++. .. ..+-++.+.+
T Consensus 20 ~s~~~k~~----ia~~L~~~Gv~~IEv-G~p~~~~~~~e~i~~i~~~~~~-~~i~~~~-r~---------~~~di~~a~~ 83 (365)
T TIGR02660 20 FTAAEKLA----IARALDEAGVDELEV-GIPAMGEEERAVIRAIVALGLP-ARLMAWC-RA---------RDADIEAAAR 83 (365)
T ss_pred CCHHHHHH----HHHHHHHcCCCEEEE-eCCCCCHHHHHHHHHHHHcCCC-cEEEEEc-CC---------CHHHHHHHHc
Confidence 57777666 566677899998844 366555433 344555544212 3333332 10 1223444444
Q ss_pred CCCCeEEEEcCC-ChhHH---------------HHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHH
Q 025860 145 CKRVVSVGINCT-PPRFI---------------SGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYV 208 (247)
Q Consensus 145 ~~~~~avG~NC~-~p~~~---------------~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~ 208 (247)
.+++.|.+--. ++.++ .++++..++. ...+.+.+ .|. ...+++.+.+.+
T Consensus 84 -~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~-g~~v~~~~-----ed~--------~r~~~~~l~~~~ 148 (365)
T TIGR02660 84 -CGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDR-GLFVSVGG-----EDA--------SRADPDFLVELA 148 (365)
T ss_pred -CCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhC-CCEEEEee-----cCC--------CCCCHHHHHHHH
Confidence 36665554432 33222 1223322221 22222111 111 013578888999
Q ss_pred HHHHHcCCeEEeec--CC-CChHHHHHHHHHhhCC
Q 025860 209 SKWCEVGASLVGGC--CR-TTPNTIKGIYRTLSNR 240 (247)
Q Consensus 209 ~~~~~~G~~iIGGC--CG-t~P~hI~al~~~l~~~ 240 (247)
+...+.|+..|.=| .| .+|..+..+-+.++..
T Consensus 149 ~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~ 183 (365)
T TIGR02660 149 EVAAEAGADRFRFADTVGILDPFSTYELVRALRQA 183 (365)
T ss_pred HHHHHcCcCEEEEcccCCCCCHHHHHHHHHHHHHh
Confidence 99999999987643 22 4899999887777543
No 394
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=56.30 E-value=1.3e+02 Score=25.75 Aligned_cols=26 Identities=31% Similarity=0.326 Sum_probs=14.8
Q ss_pred HHcCCeEEee--cCCCChHHHHHHHHHh
Q 025860 212 CEVGASLVGG--CCRTTPNTIKGIYRTL 237 (247)
Q Consensus 212 ~~~G~~iIGG--CCGt~P~hI~al~~~l 237 (247)
.+.|+++|+= .--.+|++|+.|+..+
T Consensus 126 ~~~Gad~vklFPa~~~G~~~ik~l~~~~ 153 (213)
T PRK06552 126 LEAGSEIVKLFPGSTLGPSFIKAIKGPL 153 (213)
T ss_pred HHcCCCEEEECCcccCCHHHHHHHhhhC
Confidence 3567777762 0113477777776554
No 395
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=56.21 E-value=67 Score=28.16 Aligned_cols=63 Identities=17% Similarity=0.185 Sum_probs=45.8
Q ss_pred EEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCC-C--hhHHHHHHHHHHhhcCCCEEEEeCCCC
Q 025860 118 WFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT-P--PRFISGLILIIKKVTAKPILIYPNSGE 184 (247)
Q Consensus 118 ~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~-~--p~~~~~~l~~l~~~~~~pl~vyPNaG~ 184 (247)
|.-|+.-|..+. +...+.++.+.+ .|-|+|-+--+ + -+.+..+++.+++..+.|+++.|++..
T Consensus 16 ~~H~tliDP~k~---~~~~ei~~~~~~-~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~ 81 (240)
T COG1646 16 KRHLTLIDPDKT---EEADEIAEAAAE-AGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVILFPGSPS 81 (240)
T ss_pred ceEEEEeCcccc---cccHHHHHHHHH-cCCCEEEECCcccccHHHHHHHHHHHHhhcCCCEEEecCChh
Confidence 667775444332 334555666655 58899999887 3 467999999999888999999998753
No 396
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=56.19 E-value=59 Score=26.94 Aligned_cols=59 Identities=24% Similarity=0.278 Sum_probs=29.8
Q ss_pred hcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcC
Q 025860 83 VESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINC 155 (247)
Q Consensus 83 ~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC 155 (247)
.+.|+|++-+ +|........++.++...+++|++.+ .|.+.+.+.+.+. .++++|++--
T Consensus 114 ~~~Gad~i~~--~p~~~~g~~~~~~l~~~~~~~p~~a~----------GGI~~~n~~~~~~--~G~~~v~v~s 172 (190)
T cd00452 114 LELGADIVKL--FPAEAVGPAYIKALKGPFPQVRFMPT----------GGVSLDNAAEWLA--AGVVAVGGGS 172 (190)
T ss_pred HHCCCCEEEE--cCCcccCHHHHHHHHhhCCCCeEEEe----------CCCCHHHHHHHHH--CCCEEEEEch
Confidence 3467787765 33222233344444432223444422 4666776666554 3567666543
No 397
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=56.17 E-value=1.2e+02 Score=26.52 Aligned_cols=78 Identities=6% Similarity=-0.110 Sum_probs=48.8
Q ss_pred HHHHHhcCCCCEEEEecCC---CHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEc
Q 025860 78 RVQVLVESAPDLIAFETIP---NKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGIN 154 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~---~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~N 154 (247)
.++.+...|-|++++.+-. +..++..++.+++.. +.+.++-+. +. +.. .++.+.+ .|+++|-+-
T Consensus 25 ~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~--g~~~~VRvp--------~~-~~~-~i~r~LD-~Ga~gIivP 91 (249)
T TIGR03239 25 TTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGS--ASAPVVRPP--------WN-EPV-IIKRLLD-IGFYNFLIP 91 (249)
T ss_pred HHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhc--CCCcEEECC--------CC-CHH-HHHHHhc-CCCCEEEec
Confidence 5566677999999998654 555666666666654 466666652 22 233 3334444 477877777
Q ss_pred CC-ChhHHHHHHHHH
Q 025860 155 CT-PPRFISGLILII 168 (247)
Q Consensus 155 C~-~p~~~~~~l~~l 168 (247)
.+ .++.+..+++..
T Consensus 92 ~v~taeea~~~v~a~ 106 (249)
T TIGR03239 92 FVESAEEAERAVAAT 106 (249)
T ss_pred CcCCHHHHHHHHHHc
Confidence 76 677777776543
No 398
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=56.08 E-value=51 Score=24.80 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=30.0
Q ss_pred CCCcHHHHHHHHHhCCCCeEEEEcCCC---hhHHHHHHHHHHhh
Q 025860 131 SGDSLLECASIAESCKRVVSVGINCTP---PRFISGLILIIKKV 171 (247)
Q Consensus 131 ~G~~~~~~~~~~~~~~~~~avG~NC~~---p~~~~~~l~~l~~~ 171 (247)
...+.++.++.+.+ .+++.||+.|+. ...+..+++.+++.
T Consensus 35 ~~~~~~~l~~~~~~-~~pdvV~iS~~~~~~~~~~~~~i~~l~~~ 77 (119)
T cd02067 35 VDVPPEEIVEAAKE-EDADAIGLSGLLTTHMTLMKEVIEELKEA 77 (119)
T ss_pred CCCCHHHHHHHHHH-cCCCEEEEeccccccHHHHHHHHHHHHHc
Confidence 44678888888877 589999999973 45566777777665
No 399
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=55.94 E-value=1.5e+02 Score=26.44 Aligned_cols=127 Identities=13% Similarity=0.065 Sum_probs=70.8
Q ss_pred CCCEEEEecC-----------CCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCC-CCeE-EE
Q 025860 86 APDLIAFETI-----------PNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCK-RVVS-VG 152 (247)
Q Consensus 86 gvD~i~~ET~-----------~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~-~~~a-vG 152 (247)
|+|+|=+-.- .+.+.+..+++.+++.- ++|+++-++... +-+.+.++++.+.+.. ++++ +-
T Consensus 119 ~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~-~iPv~vKl~p~~-----~~~~~~~~a~~l~~~~~G~~gi~~ 192 (294)
T cd04741 119 FPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAY-SIPVGVKTPPYT-----DPAQFDTLAEALNAFACPISFITA 192 (294)
T ss_pred cccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhc-CCCEEEEeCCCC-----CHHHHHHHHHHHhccccCCcEEEE
Confidence 6888866432 14667777888888764 689998886421 1123556666554421 5553 33
Q ss_pred EcCCCh----------------------------hHHHHHHHHHHhhcC--CCEEEEeCCCCcccccccccccCCCCChH
Q 025860 153 INCTPP----------------------------RFISGLILIIKKVTA--KPILIYPNSGEFYDADRKEWVQNTGVSDE 202 (247)
Q Consensus 153 ~NC~~p----------------------------~~~~~~l~~l~~~~~--~pl~vyPNaG~~~d~~~~~~~~~~~~~~~ 202 (247)
+|-..+ ...+..+..+++..+ .|| -.|+|. .+.+
T Consensus 193 ~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipI--ig~GGI--------------~s~~ 256 (294)
T cd04741 193 TNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQI--IGVGGV--------------LDGR 256 (294)
T ss_pred EccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCE--EEeCCC--------------CCHH
Confidence 444310 011233344444432 443 233332 2233
Q ss_pred HHHHHHHHHHHcCCeEEeecCCC---ChHHHHHHHHHhh
Q 025860 203 DFVSYVSKWCEVGASLVGGCCRT---TPNTIKGIYRTLS 238 (247)
Q Consensus 203 ~~~~~~~~~~~~G~~iIGGCCGt---~P~hI~al~~~l~ 238 (247)
+..+ ++.+||+.|.-|-+. +|..++.|.+.|.
T Consensus 257 da~e----~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~ 291 (294)
T cd04741 257 GAFR----MRLAGASAVQVGTALGKEGPKVFARIEKELE 291 (294)
T ss_pred HHHH----HHHcCCCceeEchhhhhcCchHHHHHHHHHH
Confidence 3333 445799998887773 7998888877765
No 400
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=55.84 E-value=44 Score=28.06 Aligned_cols=40 Identities=10% Similarity=0.061 Sum_probs=32.1
Q ss_pred CCCcHHHHHHHHHhCCCCeEEEEcCC---ChhHHHHHHHHHHhh
Q 025860 131 SGDSLLECASIAESCKRVVSVGINCT---PPRFISGLILIIKKV 171 (247)
Q Consensus 131 ~G~~~~~~~~~~~~~~~~~avG~NC~---~p~~~~~~l~~l~~~ 171 (247)
...|.++.++.+.+ .+++.||+.|+ ....+..+++.+++.
T Consensus 118 ~~~p~~~l~~~~~~-~~~d~v~lS~~~~~~~~~~~~~i~~lr~~ 160 (201)
T cd02070 118 RDVPPEEFVEAVKE-HKPDILGLSALMTTTMGGMKEVIEALKEA 160 (201)
T ss_pred CCCCHHHHHHHHHH-cCCCEEEEeccccccHHHHHHHHHHHHHC
Confidence 56788999998887 58999999995 356677788888765
No 401
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=55.69 E-value=1.6e+02 Score=26.72 Aligned_cols=110 Identities=18% Similarity=0.200 Sum_probs=61.6
Q ss_pred CCHHH---HHHHHHHHHHHHhcCCCCEEEEecC------------CC-------------HHHHHHHHHHHHhh-CCCCc
Q 025860 66 ITVET---LKDFHRRRVQVLVESAPDLIAFETI------------PN-------------KIEAQAYAELLEEE-NIKIP 116 (247)
Q Consensus 66 ~s~~e---~~~~~~~q~~~l~~~gvD~i~~ET~------------~~-------------~~E~~aa~~~~~~~-~~~~p 116 (247)
+|.++ +.+.|.+-++...++|.|.|=+=.- ++ ..-+..+++.+|+. +.+.|
T Consensus 139 mt~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~ 218 (338)
T cd04733 139 MTEEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFP 218 (338)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCe
Confidence 55544 5667777777788899999944211 11 22233455566654 33467
Q ss_pred EEEEEEEcCCCcccCCCcHHHHHHHH---HhCCCCeEEEEcCCC---hh--------------HHHHHHHHHHhhcCCCE
Q 025860 117 AWFSFNSKDGVNVVSGDSLLECASIA---ESCKRVVSVGINCTP---PR--------------FISGLILIIKKVTAKPI 176 (247)
Q Consensus 117 v~is~~~~~~~~l~~G~~~~~~~~~~---~~~~~~~avG~NC~~---p~--------------~~~~~l~~l~~~~~~pl 176 (247)
+.+-++..+ ....|.+++++++.+ .+ .+++.|=+-... +. ......+.+++..+.|+
T Consensus 219 v~vris~~~--~~~~g~~~eea~~ia~~Le~-~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPV 295 (338)
T cd04733 219 VGIKLNSAD--FQRGGFTEEDALEVVEALEE-AGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPL 295 (338)
T ss_pred EEEEEcHHH--cCCCCCCHHHHHHHHHHHHH-cCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCE
Confidence 777665432 223566777665444 44 467666543211 11 12356667777778886
Q ss_pred EE
Q 025860 177 LI 178 (247)
Q Consensus 177 ~v 178 (247)
++
T Consensus 296 i~ 297 (338)
T cd04733 296 MV 297 (338)
T ss_pred EE
Confidence 55
No 402
>TIGR03586 PseI pseudaminic acid synthase.
Probab=55.40 E-value=1.5e+02 Score=27.26 Aligned_cols=99 Identities=12% Similarity=0.085 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHH-----------------HHhh-CCCCcEEEEEEEcCCCcccCCC
Q 025860 72 KDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAEL-----------------LEEE-NIKIPAWFSFNSKDGVNVVSGD 133 (247)
Q Consensus 72 ~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~-----------------~~~~-~~~~pv~is~~~~~~~~l~~G~ 133 (247)
.++|++..+...+.|++++. |..+...+..+.+. +++. ..++||++|- |. .+=.
T Consensus 76 ~e~~~~L~~~~~~~Gi~~~s--tpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilst-----G~-~t~~ 147 (327)
T TIGR03586 76 WEWHKELFERAKELGLTIFS--SPFDETAVDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMST-----GI-ATLE 147 (327)
T ss_pred HHHHHHHHHHHHHhCCcEEE--ccCCHHHHHHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEEC-----CC-CCHH
Confidence 34566666666677887764 66666665554331 2221 1268999876 22 1223
Q ss_pred cHHHHHHHHHhCCCCeEEEEcCCC--h---h-HHHHHHHHHHhhcCCCEEE
Q 025860 134 SLLECASIAESCKRVVSVGINCTP--P---R-FISGLILIIKKVTAKPILI 178 (247)
Q Consensus 134 ~~~~~~~~~~~~~~~~avG~NC~~--p---~-~~~~~l~~l~~~~~~pl~v 178 (247)
.+..+++.+......+.+.+-|+. | + .=+..+..|++..+.|++.
T Consensus 148 Ei~~Av~~i~~~g~~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~~pVG~ 198 (327)
T TIGR03586 148 EIQEAVEACREAGCKDLVLLKCTSSYPAPLEDANLRTIPDLAERFNVPVGL 198 (327)
T ss_pred HHHHHHHHHHHCCCCcEEEEecCCCCCCCcccCCHHHHHHHHHHhCCCEEe
Confidence 345566666653333688888963 2 2 2256677777777788765
No 403
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=55.39 E-value=1.3e+02 Score=25.41 Aligned_cols=55 Identities=20% Similarity=0.126 Sum_probs=35.4
Q ss_pred cEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCCChhHHHHHHHHHHhhcCCCEE
Q 025860 116 PAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTPPRFISGLILIIKKVTAKPIL 177 (247)
Q Consensus 116 pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~~p~~~~~~l~~l~~~~~~pl~ 177 (247)
-+++|-...++.-+.+-+.+.+.++.+.. .|+.++-+ .++ ..++.+++..+.|++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~a~a~~~-~G~~~~~~--~~~----~~i~~i~~~~~~Pil 60 (221)
T PRK01130 6 GLIVSCQALPGEPLHSPEIMAAMALAAVQ-GGAVGIRA--NGV----EDIKAIRAVVDVPII 60 (221)
T ss_pred CEEEEecCCCCCCCCCHHHHHHHHHHHHH-CCCeEEEc--CCH----HHHHHHHHhCCCCEE
Confidence 36677776666666666777777777765 46554444 343 456666666788975
No 404
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=55.03 E-value=1e+02 Score=29.76 Aligned_cols=62 Identities=18% Similarity=0.100 Sum_probs=42.6
Q ss_pred HHHHHHHHhCCCCeEEEEcCC--ChhHHHHHHHHHHhhc-CCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHH
Q 025860 136 LECASIAESCKRVVSVGINCT--PPRFISGLILIIKKVT-AKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWC 212 (247)
Q Consensus 136 ~~~~~~~~~~~~~~avG~NC~--~p~~~~~~l~~l~~~~-~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (247)
.+.++.+.+ .+++.+=+++. ++..+...++.++... +.|+++ |.. .++ +.++...
T Consensus 230 ~e~a~~L~~-agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~----g~v-------------~t~----e~a~~l~ 287 (486)
T PRK05567 230 EERAEALVE-AGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIA----GNV-------------ATA----EAARALI 287 (486)
T ss_pred HHHHHHHHH-hCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEE----ecc-------------CCH----HHHHHHH
Confidence 456666666 47888888886 4667888888888775 678766 211 223 4455677
Q ss_pred HcCCeEE
Q 025860 213 EVGASLV 219 (247)
Q Consensus 213 ~~G~~iI 219 (247)
++|+.+|
T Consensus 288 ~aGad~i 294 (486)
T PRK05567 288 EAGADAV 294 (486)
T ss_pred HcCCCEE
Confidence 8899888
No 405
>PRK15452 putative protease; Provisional
Probab=54.94 E-value=92 Score=29.84 Aligned_cols=43 Identities=14% Similarity=0.259 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEc
Q 025860 75 HRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSK 124 (247)
Q Consensus 75 ~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~ 124 (247)
+.+.++.+.+.|||.|++ .++-.+ ..+++..+++|+++|+.+.
T Consensus 78 ~~~~l~~l~~~gvDgvIV---~d~G~l----~~~ke~~p~l~ih~stqln 120 (443)
T PRK15452 78 FIRDLEPVIAMKPDALIM---SDPGLI----MMVREHFPEMPIHLSVQAN 120 (443)
T ss_pred HHHHHHHHHhCCCCEEEE---cCHHHH----HHHHHhCCCCeEEEEeccc
Confidence 444577777889999985 444333 3455544578999998764
No 406
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=54.85 E-value=1.3e+02 Score=25.27 Aligned_cols=141 Identities=14% Similarity=0.100 Sum_probs=70.4
Q ss_pred HHHHHhcCCCCEEEEecCC-----CHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEE
Q 025860 78 RVQVLVESAPDLIAFETIP-----NKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVG 152 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~-----~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG 152 (247)
.++.+.++|+|.|-+-|.. +++.++. +++.. ++|+.+- + -+.+. .-++.+.+ .|+++|-
T Consensus 36 ~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~----i~~~v-~iPi~~~----~-----~i~~~-~~v~~~~~-~Gad~v~ 99 (217)
T cd00331 36 IAKAYEKAGAAAISVLTEPKYFQGSLEDLRA----VREAV-SLPVLRK----D-----FIIDP-YQIYEARA-AGADAVL 99 (217)
T ss_pred HHHHHHHcCCCEEEEEeCccccCCCHHHHHH----HHHhc-CCCEEEC----C-----eecCH-HHHHHHHH-cCCCEEE
Confidence 5555667899999876543 3333333 34332 6898842 1 12232 24555555 5899998
Q ss_pred EcCC--ChhHHHHHHHHHHhhcCCCEE-EEeCCCCcccc--cccccc--cCC--CCChHHHHHHHHHHHH---cCCeEEe
Q 025860 153 INCT--PPRFISGLILIIKKVTAKPIL-IYPNSGEFYDA--DRKEWV--QNT--GVSDEDFVSYVSKWCE---VGASLVG 220 (247)
Q Consensus 153 ~NC~--~p~~~~~~l~~l~~~~~~pl~-vyPNaG~~~d~--~~~~~~--~~~--~~~~~~~~~~~~~~~~---~G~~iIG 220 (247)
+... .++.+..+++..... ....+ ...|.-..... ....+. ... ...+..+ +..+++.+ .+..++.
T Consensus 100 l~~~~~~~~~~~~~~~~~~~~-g~~~~v~v~~~~e~~~~~~~g~~~i~~t~~~~~~~~~~~-~~~~~l~~~~~~~~pvia 177 (217)
T cd00331 100 LIVAALDDEQLKELYELAREL-GMEVLVEVHDEEELERALALGAKIIGINNRDLKTFEVDL-NTTERLAPLIPKDVILVS 177 (217)
T ss_pred EeeccCCHHHHHHHHHHHHHc-CCeEEEEECCHHHHHHHHHcCCCEEEEeCCCccccCcCH-HHHHHHHHhCCCCCEEEE
Confidence 8886 346666666655432 22221 12221110000 000010 000 0001112 33344543 3677777
Q ss_pred ecCCCChHHHHHHHHH
Q 025860 221 GCCRTTPNTIKGIYRT 236 (247)
Q Consensus 221 GCCGt~P~hI~al~~~ 236 (247)
+---++|++++.+.+.
T Consensus 178 ~gGI~s~edi~~~~~~ 193 (217)
T cd00331 178 ESGISTPEDVKRLAEA 193 (217)
T ss_pred EcCCCCHHHHHHHHHc
Confidence 6667799999998764
No 407
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=54.52 E-value=1.3e+02 Score=29.23 Aligned_cols=26 Identities=12% Similarity=-0.009 Sum_probs=18.5
Q ss_pred CCCcHHHHHHHHHhCCCCeEEEEcCCC
Q 025860 131 SGDSLLECASIAESCKRVVSVGINCTP 157 (247)
Q Consensus 131 ~G~~~~~~~~~~~~~~~~~avG~NC~~ 157 (247)
-|+++..+++.+... ++..|.+||.+
T Consensus 100 IGdDi~~~~~~~~~~-~~pvi~v~t~g 125 (511)
T TIGR01278 100 LQEDLGNLAAAAGLD-KSKVIVADVNA 125 (511)
T ss_pred hccCHHHHHHHhccC-CCcEEEecCCC
Confidence 478888888776542 57788888853
No 408
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=54.51 E-value=1.4e+02 Score=25.54 Aligned_cols=144 Identities=19% Similarity=0.196 Sum_probs=74.9
Q ss_pred HHHHHhcCCCCEE-----EEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCc--HHHHHHHHHhCCCCeE
Q 025860 78 RVQVLVESAPDLI-----AFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDS--LLECASIAESCKRVVS 150 (247)
Q Consensus 78 q~~~l~~~gvD~i-----~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~--~~~~~~~~~~~~~~~a 150 (247)
+++.+ ..|+|++ .|+...+...+..+++.++..-.++|+++++-...+|=...+.. -.+....+....+++.
T Consensus 17 ~~~~~-~~~aD~vElRlD~l~~~~~~~~~~~~~~~~~~~~~~~piI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~d~ 95 (228)
T TIGR01093 17 TAEKI-CKGADIVELRVDLLKDPSSNNDVDALIEQLSQLRPDKPLIFTIRTISEGGKFPGNEEEYLEELKRAADSPGPDF 95 (228)
T ss_pred HHHHh-ccCCCEEEEEechhcccCcHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCHHHHHHHHHHHHHhCCCCE
Confidence 56656 5788987 33555555555555554443223689999887665432222321 1122333311246788
Q ss_pred EEEcCC-ChhHHHHHHHHHHhhcCCCEEE-EeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEEeecCC-CCh
Q 025860 151 VGINCT-PPRFISGLILIIKKVTAKPILI-YPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCR-TTP 227 (247)
Q Consensus 151 vG~NC~-~p~~~~~~l~~l~~~~~~pl~v-yPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iIGGCCG-t~P 227 (247)
|=+--. ..+.+..+++..+.. +..+++ |=|-. ++| +-+++.+...+..+.|+.++==.+- .++
T Consensus 96 vDiEl~~~~~~~~~l~~~~~~~-~~kvI~S~H~f~-------~tp------~~~~l~~~~~~~~~~gaDivKia~~a~~~ 161 (228)
T TIGR01093 96 VDIELFLPDDAVKELINIAKKG-GTKIIMSYHDFQ-------KTP------SWEEIVERLEKALSYGADIVKIAVMANSK 161 (228)
T ss_pred EEEEccCCHHHHHHHHHHHHHC-CCEEEEeccCCC-------CCC------CHHHHHHHHHHHHHhCCCEEEEEeccCCH
Confidence 777764 455556666655433 223332 22211 112 2345666667777778777654443 456
Q ss_pred HHHHHHHHH
Q 025860 228 NTIKGIYRT 236 (247)
Q Consensus 228 ~hI~al~~~ 236 (247)
++...|-+.
T Consensus 162 ~D~~~ll~~ 170 (228)
T TIGR01093 162 EDVLTLLEI 170 (228)
T ss_pred HHHHHHHHH
Confidence 565555444
No 409
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=54.34 E-value=2.3e+02 Score=28.04 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhc---CCCCEEEEecCCCHHHHHHHHHHHHh
Q 025860 72 KDFHRRRVQVLVE---SAPDLIAFETIPNKIEAQAYAELLEE 110 (247)
Q Consensus 72 ~~~~~~q~~~l~~---~gvD~i~~ET~~~~~E~~aa~~~~~~ 110 (247)
.+.|+.|++++.. .|..-|+|=.+.+.+|++.+.++++.
T Consensus 366 ~~lf~~QlrAI~ra~~~G~~~Im~PmV~t~eE~~~~~~~~~~ 407 (565)
T TIGR01417 366 EEILRTQLRAILRASAYGKLRIMFPMVATVEEIRAVKQELEE 407 (565)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHHH
Confidence 3567778877744 68999999999999999999988775
No 410
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=54.22 E-value=1.7e+02 Score=26.41 Aligned_cols=98 Identities=12% Similarity=0.051 Sum_probs=62.5
Q ss_pred HHHHHhcCCCCEEEEecCC----------------CHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHH
Q 025860 78 RVQVLVESAPDLIAFETIP----------------NKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASI 141 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~----------------~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~ 141 (247)
-++.+.++||-.|-+|-.. +.+|+..=++++++...+.+++|.--. +.. ..+..++++++.
T Consensus 95 tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ART--Da~-~~~~g~deAI~R 171 (290)
T TIGR02321 95 VVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARV--EAL-IAGLGQQEAVRR 171 (290)
T ss_pred HHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEe--ccc-cccCCHHHHHHH
Confidence 5677888999999999752 345555556666554224455554432 222 135567888887
Q ss_pred HHh--CCCCeEEEEcC--CChhHHHHHHHHHHhhcCCCEEEEe
Q 025860 142 AES--CKRVVSVGINC--TPPRFISGLILIIKKVTAKPILIYP 180 (247)
Q Consensus 142 ~~~--~~~~~avG~NC--~~p~~~~~~l~~l~~~~~~pl~vyP 180 (247)
.+. ..|+|+|=+-+ .+++.+..+.+.+. ..+|+++.|
T Consensus 172 a~aY~eAGAD~ifv~~~~~~~~ei~~~~~~~~--~p~pv~~~~ 212 (290)
T TIGR02321 172 GQAYEEAGADAILIHSRQKTPDEILAFVKSWP--GKVPLVLVP 212 (290)
T ss_pred HHHHHHcCCCEEEecCCCCCHHHHHHHHHhcC--CCCCeEEec
Confidence 752 26899999886 36787777777652 135777665
No 411
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=54.01 E-value=1.8e+02 Score=26.70 Aligned_cols=72 Identities=19% Similarity=0.192 Sum_probs=43.9
Q ss_pred HHHHHhCCCCeEEEEcCCC---------h-----------------hHHHHHHHHHHhhc------CCCEEEEeCCCCcc
Q 025860 139 ASIAESCKRVVSVGINCTP---------P-----------------RFISGLILIIKKVT------AKPILIYPNSGEFY 186 (247)
Q Consensus 139 ~~~~~~~~~~~avG~NC~~---------p-----------------~~~~~~l~~l~~~~------~~pl~vyPNaG~~~ 186 (247)
++.+.+ .|.|+|=|||.+ | ..+.++++.+++.. +.+|++.-|....
T Consensus 150 A~~a~~-aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~- 227 (353)
T cd04735 150 TRRAIE-AGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEP- 227 (353)
T ss_pred HHHHHH-cCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccc-
Confidence 333344 589999999842 2 22455666666654 4567777775321
Q ss_pred cccccccccCCCCChHHHHHHHHHHHHcCCeEEe
Q 025860 187 DADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVG 220 (247)
Q Consensus 187 d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iIG 220 (247)
.. ...+++++.+.++.+.+.|+.+|.
T Consensus 228 -------~~-~g~~~ee~~~i~~~L~~~GvD~I~ 253 (353)
T cd04735 228 -------EE-PGIRMEDTLALVDKLADKGLDYLH 253 (353)
T ss_pred -------cC-CCCCHHHHHHHHHHHHHcCCCEEE
Confidence 11 124567777777777777877764
No 412
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=53.98 E-value=1.2e+02 Score=24.82 Aligned_cols=101 Identities=18% Similarity=0.096 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEecC-CC-HHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHh
Q 025860 67 TVETLKDFHRRRVQVLVESAPDLIAFETI-PN-KIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAES 144 (247)
Q Consensus 67 s~~e~~~~~~~q~~~l~~~gvD~i~~ET~-~~-~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~ 144 (247)
+.++..+ .++.|.+. +|.+ |-- +- .......++.+++..++.|+.+.+.+.+..+ ..++.+.+
T Consensus 11 ~~~~~~~----~~~~l~~~-i~~i--eig~~~~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~--------~~~~~~~~ 75 (202)
T cd04726 11 DLEEALE----LAKKVPDG-VDII--EAGTPLIKSEGMEAVRALREAFPDKIIVADLKTADAGA--------LEAEMAFK 75 (202)
T ss_pred CHHHHHH----HHHHhhhc-CCEE--EcCCHHHHHhCHHHHHHHHHHCCCCEEEEEEEeccccH--------HHHHHHHh
Confidence 4454444 77778776 8885 542 21 1222344556666433789888777654321 22344444
Q ss_pred CCCCeEEEEcCC-ChhHHHHHHHHHHhhcCCCEEE-EeCCCC
Q 025860 145 CKRVVSVGINCT-PPRFISGLILIIKKVTAKPILI-YPNSGE 184 (247)
Q Consensus 145 ~~~~~avG~NC~-~p~~~~~~l~~l~~~~~~pl~v-yPNaG~ 184 (247)
.|++.+-+.+. .++.+..+++..++. +.++++ -||...
T Consensus 76 -aGad~i~~h~~~~~~~~~~~i~~~~~~-g~~~~v~~~~~~t 115 (202)
T cd04726 76 -AGADIVTVLGAAPLSTIKKAVKAAKKY-GKEVQVDLIGVED 115 (202)
T ss_pred -cCCCEEEEEeeCCHHHHHHHHHHHHHc-CCeEEEEEeCCCC
Confidence 47888887775 344566667666643 555555 366653
No 413
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE. This subfamily is composed of PvsE from Vibrio parahaemolyticus and similar proteins. PvsE is a vibrioferrin biosynthesis protein which is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. It has been suggested that PvsE may be involved in the biosynthesis of the polycarboxylate siderophore vibrioferrin. It may catalyze the decarboxylation of serine to yield ethanolamine. PvsE may require homodimer formation and the presence of the PLP cofactor for activity.
Probab=53.93 E-value=90 Score=28.68 Aligned_cols=73 Identities=8% Similarity=0.063 Sum_probs=43.2
Q ss_pred HHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCC-------C----cccCCCcHHHHHHH---HHhC
Q 025860 80 QVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDG-------V----NVVSGDSLLECASI---AESC 145 (247)
Q Consensus 80 ~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~-------~----~l~~G~~~~~~~~~---~~~~ 145 (247)
+.+++.|+..+. +.++.|++.+.+.+++.+...++++-+..... + ..+-|.++.++.+. +...
T Consensus 85 ~~a~~~gi~~i~---vds~~el~~l~~~a~~~~~~~~v~lRi~~~~~~~~~~~~~~~~~~srfG~~~~~~~~~~~~~~~~ 161 (377)
T cd06843 85 AQALAQGVERIH---VESELELRRLNAVARRAGRTAPVLLRVNLALPDLPSSTLTMGGQPTPFGIDEADLPDALELLRDL 161 (377)
T ss_pred HHHHHcCCCEEE---eCCHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCCcceecCCCCCCCCcCHHHHHHHHHHHHhC
Confidence 334456887664 56677887777777766545677777765321 0 12458776654443 3333
Q ss_pred CCCeEEEEcC
Q 025860 146 KRVVSVGINC 155 (247)
Q Consensus 146 ~~~~avG~NC 155 (247)
.++...|+-|
T Consensus 162 ~~l~~~Glh~ 171 (377)
T cd06843 162 PNIRLRGFHF 171 (377)
T ss_pred CCccEEEEEE
Confidence 4667777754
No 414
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=53.90 E-value=1.5e+02 Score=26.87 Aligned_cols=138 Identities=14% Similarity=0.112 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCEEEEe------cCCCHHHHHHHHHHHHhhC--CCCcEEEEEEEcCCCcccCCCcHHHHHH
Q 025860 69 ETLKDFHRRRVQVLVESAPDLIAFE------TIPNKIEAQAYAELLEEEN--IKIPAWFSFNSKDGVNVVSGDSLLECAS 140 (247)
Q Consensus 69 ~e~~~~~~~q~~~l~~~gvD~i~~E------T~~~~~E~~aa~~~~~~~~--~~~pv~is~~~~~~~~l~~G~~~~~~~~ 140 (247)
..+.+.+++.++.|.+ |++.|-|- |-+...+...+.++++... .+.++.+.+.+... + .....
T Consensus 157 ~~~a~~l~~e~~~L~~-G~~~IQiDEP~L~~~~~~~~~~~~~~~a~~~~~~~~~~~i~l~tyfg~~-----~---~~~~~ 227 (326)
T PRK08575 157 EDYASVVNSLIKELSS-VVDAVEIHEPSIFAKGIKRDTLEKLPEVYKTMAKNVNIEKHLMTYFEIN-----N---LKRLD 227 (326)
T ss_pred HHHHHHHHHHHHHHHc-CCCEEEecCcceeCCCCCHHHHHHHHHHHHHHHhcCCCCEEEECCCCCc-----c---ccHHH
Confidence 3345556666666666 99988443 3233345566666665532 24577665554311 1 12455
Q ss_pred HHHhCCCCeEEEEcCC-ChhHHHHHHHHHHhh-cCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCC--
Q 025860 141 IAESCKRVVSVGINCT-PPRFISGLILIIKKV-TAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGA-- 216 (247)
Q Consensus 141 ~~~~~~~~~avG~NC~-~p~~~~~~l~~l~~~-~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-- 216 (247)
.+.+ ..++++|+-++ +++.+ ..+... .++.|++ |. .|.. +.+. .++++..+.+++.++.|.
T Consensus 228 ~l~~-~~vd~l~ld~~~~~~~l----~~~~~~~~~k~l~~----Gv-iD~r-n~~v----E~~eev~~~i~~~~~~~~~~ 292 (326)
T PRK08575 228 ILFS-LPVTYFGIDVIENLKKL----GRVYTYLKGRKVYL----GI-LNAR-NTKM----EKISTIRRIVNKVKRKGVSD 292 (326)
T ss_pred HHhc-CCCcEEEEEecCChhHH----HHHHhhCCCCEEEE----EE-EeCC-CCCC----CCHHHHHHHHHHHHhcCCCe
Confidence 6665 57999999997 45433 222221 1232322 32 3442 2333 468889888888877543
Q ss_pred eEEeecCC--CChHHH
Q 025860 217 SLVGGCCR--TTPNTI 230 (247)
Q Consensus 217 ~iIGGCCG--t~P~hI 230 (247)
-+|.=-|| .-|..+
T Consensus 293 l~v~pdcgl~~lp~~~ 308 (326)
T PRK08575 293 IIVGNNTLFDFIPEVV 308 (326)
T ss_pred EEEeCCCCcccCcHHH
Confidence 45777888 355554
No 415
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=53.81 E-value=1.6e+02 Score=26.21 Aligned_cols=142 Identities=11% Similarity=0.017 Sum_probs=69.0
Q ss_pred HHHHHhcCCCCEEEEec------------CC-CHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHH----HHH
Q 025860 78 RVQVLVESAPDLIAFET------------IP-NKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLE----CAS 140 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET------------~~-~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~----~~~ 140 (247)
-++.+-++|+|+|+.-. ++ +++++..--+++++-.++..+++-+-|- ....+.++ +.+
T Consensus 27 ~A~~~d~agvd~lLVGDSlgmvv~G~~sTl~Vsl~~mi~ht~aV~Rga~~~~vv~DmPF~-----sy~~s~~~a~~nA~r 101 (268)
T COG0413 27 FAKLFDQAGVDVLLVGDSLGMVVLGYDSTLPVTLEDMIYHTKAVRRGAPNAFVVADLPFG-----SYEVSPEQALKNAAR 101 (268)
T ss_pred HHhhhhhcCCcEEEEeccHHHHHcCCCCcceecHHHHHHHHHHHHhcCCCeeEEeCCCCc-----ccCCCHHHHHHHHHH
Confidence 34556668999998642 21 3444444445555533233344333332 23334444 555
Q ss_pred HHHhCCCCeEEEEcCCChhHHHHHHHHHHhhcCCCEEEEeCCCC-cccc-cccccc--cCCCCChHHHHHHHHHHHHcCC
Q 025860 141 IAESCKRVVSVGINCTPPRFISGLILIIKKVTAKPILIYPNSGE-FYDA-DRKEWV--QNTGVSDEDFVSYVSKWCEVGA 216 (247)
Q Consensus 141 ~~~~~~~~~avG~NC~~p~~~~~~l~~l~~~~~~pl~vyPNaG~-~~d~-~~~~~~--~~~~~~~~~~~~~~~~~~~~G~ 216 (247)
.+++ .++++|= |-+-+.+.+.++.|.+. .+|++. .-|. +... ....|. .+...+.+...+.++..-++|+
T Consensus 102 ~~ke-~gA~aVK--lEGG~~~~~~i~~L~~~-gIPV~g--HiGLtPQ~v~~~GGykvqGr~~~~a~~l~~dA~ale~AGa 175 (268)
T COG0413 102 LMKE-AGADAVK--LEGGEEMAETIKRLTER-GIPVMG--HIGLTPQSVNWLGGYKVQGRTEESAEKLLEDAKALEEAGA 175 (268)
T ss_pred HHHH-hCCCEEE--EcCCHHHHHHHHHHHHc-CCceEE--EecCChhhhhccCCeeeecCCHHHHHHHHHHHHHHHhcCc
Confidence 5555 4677654 43336667777777653 677432 2232 1110 011121 1111233445556666767776
Q ss_pred eEEeecCCCChHHHHH
Q 025860 217 SLVGGCCRTTPNTIKG 232 (247)
Q Consensus 217 ~iIGGCCGt~P~hI~a 232 (247)
-.|= =...|++++.
T Consensus 176 f~iv--lE~Vp~~lA~ 189 (268)
T COG0413 176 FALV--LECVPAELAK 189 (268)
T ss_pred eEEE--EeccHHHHHH
Confidence 4432 2335665543
No 416
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=53.77 E-value=2e+02 Score=27.16 Aligned_cols=152 Identities=15% Similarity=0.135 Sum_probs=79.4
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEE-----EEe-cCCCHH-HHHHHHHHHHhhC--CCCcEEEEEEEcCCCcccCCCcHH
Q 025860 66 ITVETLKDFHRRRVQVLVESAPDLI-----AFE-TIPNKI-EAQAYAELLEEEN--IKIPAWFSFNSKDGVNVVSGDSLL 136 (247)
Q Consensus 66 ~s~~e~~~~~~~q~~~l~~~gvD~i-----~~E-T~~~~~-E~~aa~~~~~~~~--~~~pv~is~~~~~~~~l~~G~~~~ 136 (247)
+|++++.+ ++..+...|+|+| +.. .+.-++ -++++.+++++.. .+.+.+-.+.+..+ -..+.
T Consensus 137 lsp~~~a~----~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~a~~~a~~~a~~eTG~~~~ya~NiT~~-----~~em~ 207 (391)
T cd08209 137 LDLDDLAE----QLREQALGGVDLIKDDEILFDNPLAPALERIRACRPVLQEVYEQTGRRTLYAVNLTGP-----VFTLK 207 (391)
T ss_pred CCHHHHHH----HHHHHHhCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCCC-----HHHHH
Confidence 47777666 5555666999998 322 333333 3445555555421 13444445544221 12333
Q ss_pred HHHHHHHhCCCCeEEEEcCC--ChhHHHHHHHHHHh--hcCCCEEEEeCCCCcccccccccccCCCCCh-HHHHHHHHHH
Q 025860 137 ECASIAESCKRVVSVGINCT--PPRFISGLILIIKK--VTAKPILIYPNSGEFYDADRKEWVQNTGVSD-EDFVSYVSKW 211 (247)
Q Consensus 137 ~~~~~~~~~~~~~avG~NC~--~p~~~~~~l~~l~~--~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~-~~~~~~~~~~ 211 (247)
+=++.+.+ .|+.++.+|-. +.. .++.+++ ..+.||.+.||.--.+... +...++. .-|.+ -|
T Consensus 208 ~ra~~~~~-~G~~~~mv~~~~~G~~----~l~~l~~~~~~~lpIhaHra~~ga~~~~-----~~~Gis~~~~l~k---l~ 274 (391)
T cd08209 208 EKARRLVE-AGANALLFNVFAYGLD----VLEALASDPEINVPIFAHPAFAGALYGS-----PDYGIAASVLLGT---LM 274 (391)
T ss_pred HHHHHHHH-hCCCEEEEeccccchH----HHHHHHhcCcCCcEEEecCCcccccccC-----CCCCCcHHHHHHH---HH
Confidence 33444445 57788888884 433 3444544 3578899999874322111 1111232 12333 34
Q ss_pred HHcCCeEE-----eecCCCChHHHHHHHHHhhC
Q 025860 212 CEVGASLV-----GGCCRTTPNTIKGIYRTLSN 239 (247)
Q Consensus 212 ~~~G~~iI-----GGCCGt~P~hI~al~~~l~~ 239 (247)
+=+|+..+ ||==..+++....+++.+..
T Consensus 275 RLaGaD~~~~~~~~Gk~~~~~~~~~~~~~~~~~ 307 (391)
T cd08209 275 RLAGADAVLFPSPYGSVALSKEEALAIAEALRR 307 (391)
T ss_pred HHcCCCccccCCccCCcCCCHHHHHHHHHHHhC
Confidence 44565542 55555677777777777643
No 417
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=53.76 E-value=1.4e+02 Score=25.27 Aligned_cols=114 Identities=10% Similarity=0.039 Sum_probs=68.6
Q ss_pred HHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCC-ChhHHHHHHHHHHhhcCCCEE--EE
Q 025860 103 AYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT-PPRFISGLILIIKKVTAKPIL--IY 179 (247)
Q Consensus 103 aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~-~p~~~~~~l~~l~~~~~~pl~--vy 179 (247)
.+++.+++.+ .++++-+-+.| -|.+....++.+.+ .+++.+-+++. +++.+.++++..++....-++ ..
T Consensus 40 ~~v~~l~~~~--~~v~lD~K~~D-----ig~t~~~~~~~~~~-~gad~vTvh~~~g~~~l~~~~~~~~~~~~~v~~v~~l 111 (213)
T TIGR01740 40 KIIDELAKLN--KLIFLDLKFAD-----IPNTVKLQYESKIK-QGADMVNVHGVAGSESVEAAKEAASEGGRGLLAVTEL 111 (213)
T ss_pred HHHHHHHHcC--CCEEEEEeecc-----hHHHHHHHHHHHHh-cCCCEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcC
Confidence 4566677764 46776665544 35566777776666 68999999997 677777777776543211121 12
Q ss_pred eCCCCcccccccccccCCCCCh-HHHHHHHHHHHHcCCeEEeecCCCChHHHHHHHHHhh
Q 025860 180 PNSGEFYDADRKEWVQNTGVSD-EDFVSYVSKWCEVGASLVGGCCRTTPNTIKGIYRTLS 238 (247)
Q Consensus 180 PNaG~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~G~~iIGGCCGt~P~hI~al~~~l~ 238 (247)
-|.|. ..|. ... +...+.++.+.+.|. .|.- |.|+.++.+++...
T Consensus 112 ss~~~------~~~~----~~~~~~v~~~a~~~~~~g~--~g~v--~~~~~~~~ir~~~~ 157 (213)
T TIGR01740 112 TSMGS------LDYG----EDTMEKVLEYAKEAKAFGL--DGPV--CSAEEAKEIRKFTG 157 (213)
T ss_pred CCCCh------hhhC----cCHHHHHHHHHHHhhhcCC--eEEE--eCHHHHHHHHHhcC
Confidence 33321 1231 112 345666677766665 4554 46999999987653
No 418
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=53.76 E-value=1.8e+02 Score=26.59 Aligned_cols=70 Identities=20% Similarity=0.272 Sum_probs=45.2
Q ss_pred HHHHHhcCC-CCEEEEec----------CC-CHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhC
Q 025860 78 RVQVLVESA-PDLIAFET----------IP-NKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESC 145 (247)
Q Consensus 78 q~~~l~~~g-vD~i~~ET----------~~-~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~ 145 (247)
.+..+.+.+ +|.|-+-. +. +.+.+..+++++++.. ++|+++-++- +-+.+.++++.+.+
T Consensus 114 ~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~-~~Pv~vKl~P-------~~~di~~iA~~~~~- 184 (310)
T COG0167 114 YARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAAT-KVPVFVKLAP-------NITDIDEIAKAAEE- 184 (310)
T ss_pred HHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhcc-cCceEEEeCC-------CHHHHHHHHHHHHH-
Confidence 333444444 88886542 11 4446667777777764 6899988863 45667788887776
Q ss_pred CCCeE-EEEcCC
Q 025860 146 KRVVS-VGINCT 156 (247)
Q Consensus 146 ~~~~a-vG~NC~ 156 (247)
.++|+ +-+|-+
T Consensus 185 ~g~Dgl~~~NT~ 196 (310)
T COG0167 185 AGADGLIAINTT 196 (310)
T ss_pred cCCcEEEEEeec
Confidence 47775 667765
No 419
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=53.68 E-value=1.8e+02 Score=26.62 Aligned_cols=109 Identities=7% Similarity=0.075 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEecC--------CCH--------------HHHHH---HHHHHHhh-CCCCcEEEEE
Q 025860 68 VETLKDFHRRRVQVLVESAPDLIAFETI--------PNK--------------IEAQA---YAELLEEE-NIKIPAWFSF 121 (247)
Q Consensus 68 ~~e~~~~~~~q~~~l~~~gvD~i~~ET~--------~~~--------------~E~~a---a~~~~~~~-~~~~pv~is~ 121 (247)
.+++.+.|..-++.+.++|.|.+-+=.- -|. ..++. +++++|+. +.+ |+++-+
T Consensus 147 I~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d-~v~vRi 225 (338)
T cd02933 147 IPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGAD-RVGIRL 225 (338)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCC-ceEEEE
Confidence 3556678888888888899999955321 111 23444 44455553 323 666666
Q ss_pred EEcCCC-cccCCCcHHHHHHH---HHhCCCCeEEEEcCCC-----hhHHHHHHHHHHhhcCCCEEE
Q 025860 122 NSKDGV-NVVSGDSLLECASI---AESCKRVVSVGINCTP-----PRFISGLILIIKKVTAKPILI 178 (247)
Q Consensus 122 ~~~~~~-~l~~G~~~~~~~~~---~~~~~~~~avG~NC~~-----p~~~~~~l~~l~~~~~~pl~v 178 (247)
+..+.. ....|.++++.+.. +.+ .+++.|-+.+.. +......++.+++..+.|+++
T Consensus 226 s~~~~~~~~~~~~~~ee~~~~~~~l~~-~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~ipvi~ 290 (338)
T cd02933 226 SPFGTFNDMGDSDPEATFSYLAKELNK-RGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFKGPLIA 290 (338)
T ss_pred CccccCCCCCCCCCHHHHHHHHHHHHH-cCCcEEEEecCCCCCcccccchHHHHHHHHHcCCCEEE
Confidence 543321 11135566655444 444 468888776542 124456777788888888765
No 420
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=53.63 E-value=50 Score=32.14 Aligned_cols=65 Identities=12% Similarity=0.120 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCCCCEEEEe-cC--CCHHHHHHHHHHHHhhCC-CCcEEEEEEEcCCCcccCCCcHHHHHHHHH
Q 025860 73 DFHRRRVQVLVESAPDLIAFE-TI--PNKIEAQAYAELLEEENI-KIPAWFSFNSKDGVNVVSGDSLLECASIAE 143 (247)
Q Consensus 73 ~~~~~q~~~l~~~gvD~i~~E-T~--~~~~E~~aa~~~~~~~~~-~~pv~is~~~~~~~~l~~G~~~~~~~~~~~ 143 (247)
++|.+.++.+.+.|+|.|.|= |. -.+.++...++.+++... ++| +.+.+.++ .|..+...+..+.
T Consensus 155 e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ip--I~~H~Hnt----~GlA~An~laAie 223 (499)
T PRK12330 155 EGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTR--INLHCHST----TGVTLVSLMKAIE 223 (499)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCe--EEEEeCCC----CCcHHHHHHHHHH
Confidence 456678888889999999776 33 345677778888887531 344 56666553 4666666666554
No 421
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=53.28 E-value=69 Score=23.96 Aligned_cols=83 Identities=12% Similarity=0.111 Sum_probs=53.0
Q ss_pred HHHHHHHHhcC-CCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEE
Q 025860 75 HRRRVQVLVES-APDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGI 153 (247)
Q Consensus 75 ~~~q~~~l~~~-gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~ 153 (247)
+.++++.+... |+|.++ |+.++..-+..+++++++.+ . ++.+....... -..++. ..+. .+...+|+
T Consensus 46 ~~~~i~~~~~~~~~d~vi-d~~g~~~~~~~~~~~l~~~G--~--~v~vg~~~~~~--~~~~~~---~~~~--~~~~i~g~ 113 (130)
T PF00107_consen 46 FVEQIRELTGGRGVDVVI-DCVGSGDTLQEAIKLLRPGG--R--IVVVGVYGGDP--ISFNLM---NLMF--KEITIRGS 113 (130)
T ss_dssp HHHHHHHHTTTSSEEEEE-ESSSSHHHHHHHHHHEEEEE--E--EEEESSTSTSE--EEEEHH---HHHH--TTEEEEEE
T ss_pred cccccccccccccceEEE-EecCcHHHHHHHHHHhccCC--E--EEEEEccCCCC--CCCCHH---HHHh--CCcEEEEE
Confidence 45577777654 899876 99998888888888888653 2 22222211011 111222 2222 36789999
Q ss_pred cCCChhHHHHHHHHHH
Q 025860 154 NCTPPRFISGLILIIK 169 (247)
Q Consensus 154 NC~~p~~~~~~l~~l~ 169 (247)
.+..++...++++.+.
T Consensus 114 ~~~~~~~~~~~~~~la 129 (130)
T PF00107_consen 114 WGGSPEDFQEALQLLA 129 (130)
T ss_dssp SSGGHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhc
Confidence 9988998888888764
No 422
>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase. This subfamily is composed of Burkholderia cepacia cryptic D-serine dehydratase (cryptic DSD), which is also called D-serine deaminase, and similar bacterial proteins. Members of this subfamily are fold type III PLP-dependent enzymes with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity, it is possible cryptic DSDs may also form dimers. Cryptic DSDs are distinct from the ubiquitous bacterial DSDs coded by the dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PLP-dependent enzymes. At present, the enzymatic and biochemical properties
Probab=53.17 E-value=1.2e+02 Score=28.09 Aligned_cols=74 Identities=11% Similarity=0.066 Sum_probs=43.7
Q ss_pred HHHHHhcC--CCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCc-HH---HHHHHHHhCCCCeEE
Q 025860 78 RVQVLVES--APDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDS-LL---ECASIAESCKRVVSV 151 (247)
Q Consensus 78 q~~~l~~~--gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~-~~---~~~~~~~~~~~~~av 151 (247)
++..+++. ++++.+ ++.+.++++.+-+.+++.+ +++.+.+.++. +..+.|.. .+ +.++.+....++...
T Consensus 88 ~l~~l~~~~~~~~i~~--~vds~~~l~~L~~~a~~~g--~~~~v~i~vn~-g~~R~G~~~~~~~~~l~~~i~~~~~l~l~ 162 (382)
T cd06818 88 RLAALLAADPDFEFFC--LVDSVDNVRALAAFFAALE--RPLNVLIELGV-PGGRTGVRTEAEALALADAIAASPALRLA 162 (382)
T ss_pred HHHHhhhcCCCCCEEE--EECCHHHHHHHHHHHHhcC--CceEEEEEECC-CCCCCCCCCHHHHHHHHHHHHcCCCceEe
Confidence 34444432 455432 5677888887777776654 45555555553 34556753 33 344444445678899
Q ss_pred EEcCC
Q 025860 152 GINCT 156 (247)
Q Consensus 152 G~NC~ 156 (247)
|+-|-
T Consensus 163 Gi~~~ 167 (382)
T cd06818 163 GVEGY 167 (382)
T ss_pred EEEee
Confidence 99995
No 423
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=53.04 E-value=94 Score=29.02 Aligned_cols=80 Identities=13% Similarity=0.055 Sum_probs=43.9
Q ss_pred HHHHHHhcCCCCEEEEec---------CCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCC
Q 025860 77 RRVQVLVESAPDLIAFET---------IPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKR 147 (247)
Q Consensus 77 ~q~~~l~~~gvD~i~~ET---------~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~ 147 (247)
+-++.+.+.|||.|.+-. .+.++.+..+.++ .+.++|++++ +-+++|+ ++++.+. .|
T Consensus 240 eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~a---v~~~i~vi~d------GGIr~g~---Dv~KaLa--lG 305 (367)
T TIGR02708 240 EDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEA---VDKRVPIVFD------SGVRRGQ---HVFKALA--SG 305 (367)
T ss_pred HHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHH---hCCCCcEEee------CCcCCHH---HHHHHHH--cC
Confidence 567778889999886543 1222333333222 3225787754 3334564 4555443 47
Q ss_pred CeEEEEcC--------CChhHHHHHHHHHHh
Q 025860 148 VVSVGINC--------TPPRFISGLILIIKK 170 (247)
Q Consensus 148 ~~avG~NC--------~~p~~~~~~l~~l~~ 170 (247)
+++|++-- .+.+.+..+++.++.
T Consensus 306 Ad~V~igR~~l~~la~~G~~gv~~~l~~l~~ 336 (367)
T TIGR02708 306 ADLVALGRPVIYGLALGGSQGARQVFEYLNK 336 (367)
T ss_pred CCEEEEcHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 88877743 345555666655443
No 424
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=53.02 E-value=2.3e+02 Score=27.66 Aligned_cols=48 Identities=10% Similarity=0.027 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhcCCCCEEEEecC---CCHHHHHHHHHHHHhhCCCCcEEEEEEE
Q 025860 73 DFHRRRVQVLVESAPDLIAFETI---PNKIEAQAYAELLEEENIKIPAWFSFNS 123 (247)
Q Consensus 73 ~~~~~q~~~l~~~gvD~i~~ET~---~~~~E~~aa~~~~~~~~~~~pv~is~~~ 123 (247)
+.-.++++.+++.|+|+|=+-.- +..++++.+++.+++.. +.| +|+..
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~~-~~p--ISIDT 215 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSFDDDPDVVKEKVKTALDAL-DSP--VIADT 215 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCcHHHHHHHHHHHHhhC-CCc--EEEeC
Confidence 44555888888899999976544 55556778888887642 344 56643
No 425
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=52.85 E-value=1.6e+02 Score=25.93 Aligned_cols=109 Identities=9% Similarity=0.031 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEecCCCHH--HHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHh
Q 025860 67 TVETLKDFHRRRVQVLVESAPDLIAFETIPNKI--EAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAES 144 (247)
Q Consensus 67 s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~~--E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~ 144 (247)
|.+|+...-+ -++.+.+.|+|-|+|=-+..-. .....-++++..+ ++|+.+.-.|+.- ....++++.+.+
T Consensus 68 s~~E~~~M~~-di~~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a~-~~~vTFHRAfD~~------~d~~~al~~l~~ 139 (248)
T PRK11572 68 SDGEFAAMLE-DIATVRELGFPGLVTGVLDVDGHVDMPRMRKIMAAAG-PLAVTFHRAFDMC------ANPLNALKQLAD 139 (248)
T ss_pred CHHHHHHHHH-HHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhc-CCceEEechhhcc------CCHHHHHHHHHH
Confidence 5567666444 6888999999999996544221 2222333333333 5777655555432 144567877776
Q ss_pred CCCCeEEEEcCCC--hhHHHHHHHHHHhhcCCCEEEEeCCCCc
Q 025860 145 CKRVVSVGINCTP--PRFISGLILIIKKVTAKPILIYPNSGEF 185 (247)
Q Consensus 145 ~~~~~avG~NC~~--p~~~~~~l~~l~~~~~~pl~vyPNaG~~ 185 (247)
.+++-|.-.-.. ...-.+.|+.+.+..+..+ +.|-+|..
T Consensus 140 -lG~~rILTSGg~~~a~~g~~~L~~lv~~a~~~~-Im~GgGV~ 180 (248)
T PRK11572 140 -LGVARILTSGQQQDAEQGLSLIMELIAASDGPI-IMAGAGVR 180 (248)
T ss_pred -cCCCEEECCCCCCCHHHHHHHHHHHHHhcCCCE-EEeCCCCC
Confidence 477777655543 2333455566555445444 99998863
No 426
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=52.80 E-value=1.7e+02 Score=26.03 Aligned_cols=64 Identities=16% Similarity=0.233 Sum_probs=38.9
Q ss_pred cHHHHHHHHHhCCCCeEEEEcCCChhHHHHHHHHHHhh-cCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHH
Q 025860 134 SLLECASIAESCKRVVSVGINCTPPRFISGLILIIKKV-TAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWC 212 (247)
Q Consensus 134 ~~~~~~~~~~~~~~~~avG~NC~~p~~~~~~l~~l~~~-~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (247)
+++++.+.+. .+++.|++.-..|+.+..+++.++.. .+.|+ .+-+| +++ +.+.+|.
T Consensus 192 t~eea~~A~~--~gaD~I~ld~~~p~~l~~~~~~~~~~~~~i~i--~AsGG---------------I~~----~ni~~~~ 248 (272)
T cd01573 192 SLEEALAAAE--AGADILQLDKFSPEELAELVPKLRSLAPPVLL--AAAGG---------------INI----ENAAAYA 248 (272)
T ss_pred CHHHHHHHHH--cCCCEEEECCCCHHHHHHHHHHHhccCCCceE--EEECC---------------CCH----HHHHHHH
Confidence 3566666553 47888888777777777777665432 13332 22222 345 4455578
Q ss_pred HcCCeEEe
Q 025860 213 EVGASLVG 220 (247)
Q Consensus 213 ~~G~~iIG 220 (247)
+.|+..|.
T Consensus 249 ~~Gvd~I~ 256 (272)
T cd01573 249 AAGADILV 256 (272)
T ss_pred HcCCcEEE
Confidence 88988883
No 427
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=52.64 E-value=1.7e+02 Score=26.10 Aligned_cols=94 Identities=14% Similarity=0.231 Sum_probs=48.9
Q ss_pred HHHHHhcCCCCEEEEecCCCHHHHHHHHHHH-HhhCCCCcEEEEEEEcCCCcccC-----CCcHHHHHHHHHhCCCCeEE
Q 025860 78 RVQVLVESAPDLIAFETIPNKIEAQAYAELL-EEENIKIPAWFSFNSKDGVNVVS-----GDSLLECASIAESCKRVVSV 151 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~-~~~~~~~pv~is~~~~~~~~l~~-----G~~~~~~~~~~~~~~~~~av 151 (247)
.++.+.++|+|.++. . +-+++.. +.+..++|+++-++....-...+ =.++++++. .+++||
T Consensus 48 ~v~~v~~~g~dav~~--~------~G~~~~~~~~y~~dvplivkl~~~t~l~~~~~~~~~~~~ve~ai~-----lgadAV 114 (265)
T COG1830 48 IVAKVAEAGADAVAM--T------PGIARSVHRGYAHDVPLIVKLNGSTSLSPDPNDQVLVATVEDAIR-----LGADAV 114 (265)
T ss_pred HHHHHHhcCCCEEEe--c------HhHHhhcCccccCCcCEEEEeccccccCCCcccceeeeeHHHHHh-----CCCcEE
Confidence 556677799999972 2 2223333 33334799999988653211111 133444442 466766
Q ss_pred EE--cCCC---hhHHHHHHHHHHhh--cCCCEE--EEeCCCC
Q 025860 152 GI--NCTP---PRFISGLILIIKKV--TAKPIL--IYPNSGE 184 (247)
Q Consensus 152 G~--NC~~---p~~~~~~l~~l~~~--~~~pl~--vyPNaG~ 184 (247)
|+ |=.+ .+.+..+-+....+ ...|++ +||-.-.
T Consensus 115 ~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~ 156 (265)
T COG1830 115 GATVYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPA 156 (265)
T ss_pred EEEEecCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCc
Confidence 64 5542 23333333333332 467854 6876543
No 428
>KOG2949 consensus Ketopantoate hydroxymethyltransferase [Coenzyme transport and metabolism]
Probab=52.27 E-value=1.7e+02 Score=25.85 Aligned_cols=83 Identities=23% Similarity=0.276 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcC------CCcccCCCcHHHHHHHHH----
Q 025860 74 FHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKD------GVNVVSGDSLLECASIAE---- 143 (247)
Q Consensus 74 ~~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~------~~~l~~G~~~~~~~~~~~---- 143 (247)
.-+..++.+.++|+|.+=+|--++- ...+++.+-+. ++||.--+-+.+ ++.-..|-++..+++.+.
T Consensus 118 a~knAv~vmk~~g~~~vK~EgGs~~--~~~~~~~l~er--gipV~gHvGLTPQ~v~~lGGyk~QGr~~~~a~~l~EtAmq 193 (306)
T KOG2949|consen 118 AVKNAVRVMKEGGMDAVKLEGGSNS--RITAAKRLVER--GIPVMGHVGLTPQAVSVLGGYKPQGRNIASAVKLVETAMQ 193 (306)
T ss_pred HHHHHHHHHHhcCCceEEEccCcHH--HHHHHHHHHHc--CCceeeeccCChhhhhhccCcCccchhHHHHHHHHHHHHH
Confidence 3445777888899999999987622 22233334444 578876665443 234446777777766543
Q ss_pred -hCCCCeEEEEcCCChhH
Q 025860 144 -SCKRVVSVGINCTPPRF 160 (247)
Q Consensus 144 -~~~~~~avG~NC~~p~~ 160 (247)
+..|+..|-+.|..|..
T Consensus 194 Lqk~Gc~svvlECvP~~~ 211 (306)
T KOG2949|consen 194 LQKAGCFSVVLECVPPPV 211 (306)
T ss_pred HHhcccceEeeecCChHH
Confidence 12588999999996543
No 429
>PF00463 ICL: Isocitrate lyase family; InterPro: IPR000918 Isocitrate lyase (4.1.3.1 from EC) [, ] is an enzyme that catalyzes the conversion of isocitrate to succinate and glyoxylate. This is the first step in the glyoxylate bypass, an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. A cysteine, a histidine and a glutamate or aspartate have been found to be important for the enzyme's catalytic activity. Only one cysteine residue is conserved between the sequences of the fungal, plant and bacterial enzymes; it is located in the middle of a conserved hexapeptide. Other enzymes also belong to this family including carboxyvinyl-carboxyphosphonate phosphorylmutase (2.7.8.23 from EC) which catalyses the conversion of 1-carboxyvinyl carboxyphosphonate to 3-(hydrohydroxyphosphoryl) pyruvate carbon dioxide, and phosphoenolpyruvate mutase (5.4.2.9 from EC), which is involved in the biosynthesis of phosphinothricin tripeptide antiobiotics. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1IGW_D 3P0X_B 3EOL_B 3E5B_B 3OQ8_D 3LG3_A 3I4E_D 1F8I_B 1F8M_D 1F61_A ....
Probab=52.25 E-value=32 Score=33.55 Aligned_cols=45 Identities=22% Similarity=0.239 Sum_probs=28.4
Q ss_pred HHHHHhcCCCCEEEEec-CCCHHHHHHHHHHHHhhCCCCcEEEEEEEcC
Q 025860 78 RVQVLVESAPDLIAFET-IPNKIEAQAYAELLEEENIKIPAWFSFNSKD 125 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET-~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~ 125 (247)
++.++. .++|+||+|| -|++.+++...+.+++..+++.+. +.+.+
T Consensus 371 Ra~A~a-PyADllW~ET~~Pd~~~a~~Fa~~V~~~~P~k~La--YNlSP 416 (526)
T PF00463_consen 371 RALAFA-PYADLLWMETKTPDLAQAKEFAEGVHAVYPGKKLA--YNLSP 416 (526)
T ss_dssp HHHHHG-GG-SEEEE--SS--HHHHHHHHHHHHHHSTT-EEE--EEE-S
T ss_pred HHHhhC-cccCeeeEecCCCCHHHHHHHHHHHHHhCCcceEE--ecCCc
Confidence 555555 7899999997 599999999999999876544443 44444
No 430
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=52.18 E-value=51 Score=31.80 Aligned_cols=65 Identities=17% Similarity=0.175 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhcCCCCEEEEe-cC--CCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHH
Q 025860 72 KDFHRRRVQVLVESAPDLIAFE-TI--PNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAE 143 (247)
Q Consensus 72 ~~~~~~q~~~l~~~gvD~i~~E-T~--~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~ 143 (247)
.++|.+.++.+.+.|+|.|.|= |. -.+.++...++.+++.- ++| +.|.+.++ .|..++.++..+.
T Consensus 152 ~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~-~vp--I~~H~Hnt----~GlA~AN~laAie 219 (467)
T PRK14041 152 LEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKF-GVP--VEVHSHCT----TGLASLAYLAAVE 219 (467)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhc-CCc--eEEEecCC----CCcHHHHHHHHHH
Confidence 3567778888889999999775 43 35668888888888753 355 46666553 4666666665554
No 431
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=52.17 E-value=99 Score=29.17 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=19.3
Q ss_pred CCeEEeecCCCChHHHHHHHHHhhC
Q 025860 215 GASLVGGCCRTTPNTIKGIYRTLSN 239 (247)
Q Consensus 215 G~~iIGGCCGt~P~hI~al~~~l~~ 239 (247)
.++||||+. .+|.++++|++.|+.
T Consensus 159 ~VNiig~~~-~~~~D~~eik~lL~~ 182 (417)
T cd01966 159 QVNLLPGAH-LTPGDVEELKDIIEA 182 (417)
T ss_pred cEEEECCCC-CCHHHHHHHHHHHHH
Confidence 389999984 468899999988864
No 432
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=52.10 E-value=1.6e+02 Score=26.08 Aligned_cols=79 Identities=6% Similarity=-0.065 Sum_probs=51.1
Q ss_pred HHHHHhcCCCCEEEEecCC---CHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEc
Q 025860 78 RVQVLVESAPDLIAFETIP---NKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGIN 154 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~---~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~N 154 (247)
.++.+..+|-|++++.+-. +..++...+.+++.. +.+.++-+. ++ +.. .++.+.+ .|+.+|-+=
T Consensus 31 ~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~--g~~~lVRvp--------~~-~~~-~i~r~LD-~GA~GIivP 97 (267)
T PRK10128 31 MAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPY--ASQPVIRPV--------EG-SKP-LIKQVLD-IGAQTLLIP 97 (267)
T ss_pred HHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhc--CCCeEEECC--------CC-CHH-HHHHHhC-CCCCeeEec
Confidence 4566677899999998544 566666666666654 455555442 22 223 3444445 588888888
Q ss_pred CC-ChhHHHHHHHHHH
Q 025860 155 CT-PPRFISGLILIIK 169 (247)
Q Consensus 155 C~-~p~~~~~~l~~l~ 169 (247)
.+ .++.+..+++..+
T Consensus 98 ~V~saeeA~~~V~a~r 113 (267)
T PRK10128 98 MVDTAEQARQVVSATR 113 (267)
T ss_pred CcCCHHHHHHHHHhcC
Confidence 76 6888877777543
No 433
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=52.02 E-value=42 Score=29.60 Aligned_cols=49 Identities=20% Similarity=0.108 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEE
Q 025860 73 DFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNS 123 (247)
Q Consensus 73 ~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~ 123 (247)
+.|.+.++..++.|+.+++-.|-.+.+|.+.+.+++++. +.|++++..+
T Consensus 79 ~~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~--g~~v~~a~Nf 127 (266)
T TIGR00036 79 EGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKA--GIAAVIAPNF 127 (266)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcC--CccEEEECcc
Confidence 345556666677777777645545555666666665553 4666666554
No 434
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=51.91 E-value=1.1e+02 Score=27.53 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=18.2
Q ss_pred cCCCcHHHHHHHHHhCCCCeEEEEcCCC
Q 025860 130 VSGDSLLECASIAESCKRVVSVGINCTP 157 (247)
Q Consensus 130 ~~G~~~~~~~~~~~~~~~~~avG~NC~~ 157 (247)
.+|.+++.+.+.++ .|...|-+-.++
T Consensus 85 DHg~~~e~i~~ai~--~GftSVM~DgS~ 110 (286)
T PRK08610 85 DHGSSFEKCKEAID--AGFTSVMIDASH 110 (286)
T ss_pred CCCCCHHHHHHHHH--cCCCEEEEeCCC
Confidence 47777777776664 367888888874
No 435
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=51.76 E-value=26 Score=27.00 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=33.8
Q ss_pred ChHHHHHHHHHHHHcCCeEEeecCCCChHHHHHHHHHhhCCCCCC
Q 025860 200 SDEDFVSYVSKWCEVGASLVGGCCRTTPNTIKGIYRTLSNRSSVL 244 (247)
Q Consensus 200 ~~~~~~~~~~~~~~~G~~iIGGCCGt~P~hI~al~~~l~~~~~~~ 244 (247)
.|+...+.++..++.|+.+|=|+-|-++++++.|+++-+ +.|++
T Consensus 76 ~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~-~~~vl 119 (124)
T PF01113_consen 76 NPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAK-KIPVL 119 (124)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTT-TSEEE
T ss_pred ChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhc-cCCEE
Confidence 477777888888899999999999999999999987544 35543
No 436
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=51.72 E-value=2e+02 Score=26.52 Aligned_cols=152 Identities=13% Similarity=0.164 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCeEEEEecCCcccC-cCCCCCCCCCCCCCCCHHH----HHHHHHH
Q 025860 3 RRSVEIAREARDMYFERCSKSSCDSVTDDRIPKHRPILVAASVGSYGAY-LADGSEYSGNYGDAITVET----LKDFHRR 77 (247)
Q Consensus 3 ~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~-l~~g~eY~g~y~~~~s~~e----~~~~~~~ 77 (247)
...+++||+|++. +-+++ -++- |..+ -.||.-..+.-....+.++ ++++-+.
T Consensus 58 ~~~~~~akrak~~--------------------Gm~vl--ldfH-YSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~yT~~ 114 (332)
T PF07745_consen 58 EDVIALAKRAKAA--------------------GMKVL--LDFH-YSDFWADPGKQNKPAAWANLSFDQLAKAVYDYTKD 114 (332)
T ss_dssp HHHHHHHHHHHHT--------------------T-EEE--EEE--SSSS--BTTB-B--TTCTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC--------------------CCeEE--Eeec-ccCCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHH
Confidence 4678899988764 22333 3333 4333 2344444444444456555 4566677
Q ss_pred HHHHHhcCCC--CEEEE--ec----------CCCHHH----HHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHH
Q 025860 78 RVQVLVESAP--DLIAF--ET----------IPNKIE----AQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECA 139 (247)
Q Consensus 78 q~~~l~~~gv--D~i~~--ET----------~~~~~E----~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~ 139 (247)
-++.|.+.|+ |++-+ |+ ..+..- +.+..+++|+..++.+|++.+.-.. +...+.-.+
T Consensus 115 vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~-----~~~~~~~~f 189 (332)
T PF07745_consen 115 VLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPNIKVMLHLANGG-----DNDLYRWFF 189 (332)
T ss_dssp HHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES-TT-----SHHHHHHHH
T ss_pred HHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCC-----chHHHHHHH
Confidence 7888888896 66533 21 122222 2345678888766778887774211 112234455
Q ss_pred HHHHh-CCCCeEEEEcCC---C--hhHHHHHHHHHHhhcCCCEE----EEeCC
Q 025860 140 SIAES-CKRVVSVGINCT---P--PRFISGLILIIKKVTAKPIL----IYPNS 182 (247)
Q Consensus 140 ~~~~~-~~~~~avG~NC~---~--p~~~~~~l~~l~~~~~~pl~----vyPNa 182 (247)
..+.. ....|.||++.- + .+.+...++.|.+.-++|++ .||+.
T Consensus 190 ~~l~~~g~d~DviGlSyYP~w~~~l~~l~~~l~~l~~ry~K~V~V~Et~yp~t 242 (332)
T PF07745_consen 190 DNLKAAGVDFDVIGLSYYPFWHGTLEDLKNNLNDLASRYGKPVMVVETGYPWT 242 (332)
T ss_dssp HHHHHTTGG-SEEEEEE-STTST-HHHHHHHHHHHHHHHT-EEEEEEE---SB
T ss_pred HHHHhcCCCcceEEEecCCCCcchHHHHHHHHHHHHHHhCCeeEEEecccccc
Confidence 55544 234579999993 2 45666777777666678875 57766
No 437
>PLN02826 dihydroorotate dehydrogenase
Probab=51.68 E-value=2.2e+02 Score=27.01 Aligned_cols=143 Identities=19% Similarity=0.168 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCEEEEe-----c-----CCCHHHHHHHHHHHHhh--------CCCCcEEEEEEEcCCCccc
Q 025860 69 ETLKDFHRRRVQVLVESAPDLIAFE-----T-----IPNKIEAQAYAELLEEE--------NIKIPAWFSFNSKDGVNVV 130 (247)
Q Consensus 69 ~e~~~~~~~q~~~l~~~gvD~i~~E-----T-----~~~~~E~~aa~~~~~~~--------~~~~pv~is~~~~~~~~l~ 130 (247)
++..+.|...++.+. ..+|+|-+- | ..+.+.+..+++.+++. ..++|+++-++-+ +
T Consensus 200 ~~~~~Dy~~~~~~~~-~~aDylelNiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPd----l- 273 (409)
T PLN02826 200 EDAAADYVQGVRALS-QYADYLVINVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPD----L- 273 (409)
T ss_pred cccHHHHHHHHHHHh-hhCCEEEEECCCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCC----C-
Confidence 444555777788776 469998765 2 12223445555555422 1258999888531 1
Q ss_pred CCCcHHHHHHHHHhCCCCeE-EEEcCCC--hh---------------------HHHHHHHHHHhhc--CCCEEEEeCCCC
Q 025860 131 SGDSLLECASIAESCKRVVS-VGINCTP--PR---------------------FISGLILIIKKVT--AKPILIYPNSGE 184 (247)
Q Consensus 131 ~G~~~~~~~~~~~~~~~~~a-vG~NC~~--p~---------------------~~~~~l~~l~~~~--~~pl~vyPNaG~ 184 (247)
+-+.+.++++.+.+ .++++ +-+|.+- +. ..+..+..+.+.. +.||+. .+|.
T Consensus 274 ~~~di~~ia~~a~~-~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIg--vGGI 350 (409)
T PLN02826 274 SKEDLEDIAAVALA-LGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVG--CGGV 350 (409)
T ss_pred CHHHHHHHHHHHHH-cCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEE--ECCC
Confidence 22357778877766 57886 5667541 11 1233344444333 233221 1111
Q ss_pred cccccccccccCCCCChHHHHHHHHHHHHcCCeEEeecCCC---ChHHHHHHHHHhh
Q 025860 185 FYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCRT---TPNTIKGIYRTLS 238 (247)
Q Consensus 185 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iIGGCCGt---~P~hI~al~~~l~ 238 (247)
.+. +.+.+.+.+||+.|.-|.+. +|..++.|.+.|.
T Consensus 351 --------------~sg----~Da~e~i~AGAs~VQv~Ta~~~~Gp~~i~~I~~eL~ 389 (409)
T PLN02826 351 --------------SSG----EDAYKKIRAGASLVQLYTAFAYEGPALIPRIKAELA 389 (409)
T ss_pred --------------CCH----HHHHHHHHhCCCeeeecHHHHhcCHHHHHHHHHHHH
Confidence 123 33444677899999877662 7888888877764
No 438
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=51.64 E-value=1.2e+02 Score=31.09 Aligned_cols=71 Identities=23% Similarity=0.435 Sum_probs=46.1
Q ss_pred HHHHHhCCCCeEEEEcCC---------Ch-----------------hHHHHHHHHHHhhc--CCCEEEEeCCCCcccccc
Q 025860 139 ASIAESCKRVVSVGINCT---------PP-----------------RFISGLILIIKKVT--AKPILIYPNSGEFYDADR 190 (247)
Q Consensus 139 ~~~~~~~~~~~avG~NC~---------~p-----------------~~~~~~l~~l~~~~--~~pl~vyPNaG~~~d~~~ 190 (247)
++.+.+ .|+|+|-|||. +| ..+.++++.+++.. +.||++.-|+..
T Consensus 557 A~~a~~-aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~------ 629 (765)
T PRK08255 557 ARRAAE-AGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHD------ 629 (765)
T ss_pred HHHHHH-cCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEcccc------
Confidence 333344 59999999998 33 23455666666654 578999888742
Q ss_pred cccccCCCCChHHHHHHHHHHHHcCCeEE
Q 025860 191 KEWVQNTGVSDEDFVSYVSKWCEVGASLV 219 (247)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~G~~iI 219 (247)
|... ..++++..++++.+.+.|+.+|
T Consensus 630 --~~~~-g~~~~~~~~~~~~l~~~g~d~i 655 (765)
T PRK08255 630 --WVEG-GNTPDDAVEIARAFKAAGADLI 655 (765)
T ss_pred --ccCC-CCCHHHHHHHHHHHHhcCCcEE
Confidence 2211 1356777788888888887665
No 439
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=51.50 E-value=58 Score=32.46 Aligned_cols=64 Identities=17% Similarity=0.095 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhcCCCCEEEEecC---CCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHH
Q 025860 73 DFHRRRVQVLVESAPDLIAFETI---PNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAE 143 (247)
Q Consensus 73 ~~~~~q~~~l~~~gvD~i~~ET~---~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~ 143 (247)
++|.+.++.+.+.|+|.|.|=-+ ..+.++...++.+++.. ++| +.|.+.++ .|..+...+..+.
T Consensus 154 e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~-~ip--i~~H~Hnt----~Gla~an~laAie 220 (596)
T PRK14042 154 DNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQAT-GLP--VHLHSHST----SGLASICHYEAVL 220 (596)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhhc-CCE--EEEEeCCC----CCcHHHHHHHHHH
Confidence 45666888888899999987633 35667777888888753 455 46666543 5666676666554
No 440
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=51.46 E-value=97 Score=27.24 Aligned_cols=59 Identities=10% Similarity=0.077 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHh
Q 025860 74 FHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAES 144 (247)
Q Consensus 74 ~~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~ 144 (247)
-|.+-++.++..+.|.|++--+-+.+.+.++++++.. +..+|.++ +..+..+++..+..
T Consensus 137 ~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~aa~t---Gh~v~tTl---------Ha~~~~~ai~Rl~~ 195 (264)
T cd01129 137 TFARGLRAILRQDPDIIMVGEIRDAETAEIAVQAALT---GHLVLSTL---------HTNDAPGAITRLLD 195 (264)
T ss_pred CHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHHHHc---CCcEEEEe---------ccCCHHHHHHHHHH
Confidence 3666777777889999999999999999999998874 35677666 66777888887765
No 441
>PRK06801 hypothetical protein; Provisional
Probab=50.79 E-value=1.9e+02 Score=26.01 Aligned_cols=105 Identities=10% Similarity=0.108 Sum_probs=59.8
Q ss_pred HHHHHhcCCCCEEEEe--cCC---CHHHHHHHHHHHHhhCCCCcEEEEEEE--cCCCc--c-----cCCCcHHHHHHHHH
Q 025860 78 RVQVLVESAPDLIAFE--TIP---NKIEAQAYAELLEEENIKIPAWFSFNS--KDGVN--V-----VSGDSLLECASIAE 143 (247)
Q Consensus 78 q~~~l~~~gvD~i~~E--T~~---~~~E~~aa~~~~~~~~~~~pv~is~~~--~~~~~--l-----~~G~~~~~~~~~~~ 143 (247)
.++..++.|++.+.+- ..| ++...+.+++.++..+ .+|=.-+-. ..+.. . ..-+.++++.+...
T Consensus 89 ~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~g--v~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~ 166 (286)
T PRK06801 89 AVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVG--VSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVD 166 (286)
T ss_pred HHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcC--CeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHH
Confidence 4455567899999884 333 2233334445555543 332111111 11110 0 01246788888776
Q ss_pred hCCCCeEEEEcCC---C-----hhHHHHHHHHHHhhcCCCEEEEeCCCCc
Q 025860 144 SCKRVVSVGINCT---P-----PRFISGLILIIKKVTAKPILIYPNSGEF 185 (247)
Q Consensus 144 ~~~~~~avG~NC~---~-----p~~~~~~l~~l~~~~~~pl~vyPNaG~~ 185 (247)
. .++|.+.+.-. + |..-...|+.+++..+.||++.-.+|..
T Consensus 167 ~-tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGGSgi~ 215 (286)
T PRK06801 167 R-TGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGGSGIS 215 (286)
T ss_pred H-HCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCC
Confidence 6 68999998431 1 3344567888888788999888877753
No 442
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=50.73 E-value=2.4e+02 Score=27.22 Aligned_cols=95 Identities=4% Similarity=0.064 Sum_probs=45.1
Q ss_pred HHHHHHHHhcCC-CCEE-EEecCC-CHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCc---ccCCCcHHH---HHHHHHhC
Q 025860 75 HRRRVQVLVESA-PDLI-AFETIP-NKIEAQAYAELLEEENIKIPAWFSFNSKDGVN---VVSGDSLLE---CASIAESC 145 (247)
Q Consensus 75 ~~~q~~~l~~~g-vD~i-~~ET~~-~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~---l~~G~~~~~---~~~~~~~~ 145 (247)
..+.++.|.+.| .++- .++|-. ++..=...++.+++.+- .-+.+.+..-++.. +.-|.+.++ +++.+++
T Consensus 257 ~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~-~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~- 334 (497)
T TIGR02026 257 FQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAGL-VHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQ- 334 (497)
T ss_pred HHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhCC-cEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHH-
Confidence 455666676665 6663 345543 23111345666777651 23333333322211 233455554 4555554
Q ss_pred CCCe-----EEEEcCCChhHHHHHHHHHHhh
Q 025860 146 KRVV-----SVGINCTPPRFISGLILIIKKV 171 (247)
Q Consensus 146 ~~~~-----avG~NC~~p~~~~~~l~~l~~~ 171 (247)
.|+. .+|+---.++.+...++.+.+.
T Consensus 335 ~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l 365 (497)
T TIGR02026 335 HNILSEAQFITGFENETDETFEETYRQLLDW 365 (497)
T ss_pred CCCcEEEEEEEECCCCCHHHHHHHHHHHHHc
Confidence 3442 2333232356677777665543
No 443
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=50.59 E-value=1.1e+02 Score=30.51 Aligned_cols=64 Identities=16% Similarity=0.140 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcCCCCEEEEe-cC--CCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHH
Q 025860 73 DFHRRRVQVLVESAPDLIAFE-TI--PNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAE 143 (247)
Q Consensus 73 ~~~~~q~~~l~~~gvD~i~~E-T~--~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~ 143 (247)
++|.+.++.+.+.|+|.|.+= |. ..+.++..+++.+++.. ++| +.|.+.++ .|..++..+..+.
T Consensus 149 ~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~-~~p--i~~H~Hnt----~Gla~An~laAve 215 (582)
T TIGR01108 149 ETYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRF-GLP--VHLHSHAT----TGMAEMALLKAIE 215 (582)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhC-CCc--eEEEecCC----CCcHHHHHHHHHH
Confidence 456668888888999999775 43 35678888888888753 355 46666553 4555565555553
No 444
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=50.58 E-value=2.1e+02 Score=26.48 Aligned_cols=112 Identities=11% Similarity=0.048 Sum_probs=62.1
Q ss_pred CCCHH---HHHHHHHHHHHHHhcCCCCEE--------EEecCCCH--------------HHHHHHH---HHHHhh-CCCC
Q 025860 65 AITVE---TLKDFHRRRVQVLVESAPDLI--------AFETIPNK--------------IEAQAYA---ELLEEE-NIKI 115 (247)
Q Consensus 65 ~~s~~---e~~~~~~~q~~~l~~~gvD~i--------~~ET~~~~--------------~E~~aa~---~~~~~~-~~~~ 115 (247)
+.|.+ ++.+.|..-++...++|.|.+ ++..|-|. .-++..+ +++|+. +.+
T Consensus 148 ~mt~~eI~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~- 226 (362)
T PRK10605 148 ALELEEIPGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGAD- 226 (362)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCC-
Confidence 35554 456678888888888999999 34544332 2344444 444543 322
Q ss_pred cEEEEEEEcCC-CcccCCCcHHH-HH---HHHHhCCCCeEEEEcCCC----hhHHHHHHHHHHhhcCCCEEE
Q 025860 116 PAWFSFNSKDG-VNVVSGDSLLE-CA---SIAESCKRVVSVGINCTP----PRFISGLILIIKKVTAKPILI 178 (247)
Q Consensus 116 pv~is~~~~~~-~~l~~G~~~~~-~~---~~~~~~~~~~avG~NC~~----p~~~~~~l~~l~~~~~~pl~v 178 (247)
++.+-++..+. .....|.++++ ++ +.+.+ .+++.|-+.+.. +.......+.+++..+.|+++
T Consensus 227 ~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~-~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~~pv~~ 297 (362)
T PRK10605 227 RIGIRISPLGTFNNVDNGPNEEADALYLIEQLGK-RGIAYLHMSEPDWAGGEPYSDAFREKVRARFHGVIIG 297 (362)
T ss_pred eEEEEECCccccccCCCCCCHHHHHHHHHHHHHH-cCCCEEEeccccccCCccccHHHHHHHHHHCCCCEEE
Confidence 34444443221 11335677666 34 44444 478888877742 122344556677777777654
No 445
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=50.53 E-value=1.4e+02 Score=26.81 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=18.4
Q ss_pred cCCCcHHHHHHHHHhCCCCeEEEEcCCC
Q 025860 130 VSGDSLLECASIAESCKRVVSVGINCTP 157 (247)
Q Consensus 130 ~~G~~~~~~~~~~~~~~~~~avG~NC~~ 157 (247)
.+|.+++.+.+.++ .|...|-+-+++
T Consensus 85 DHg~~~e~i~~ai~--~GftSVM~DgS~ 110 (285)
T PRK07709 85 DHGSSFEKCKEAID--AGFTSVMIDASH 110 (285)
T ss_pred CCCCCHHHHHHHHH--cCCCEEEEeCCC
Confidence 47777777777665 367888888874
No 446
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=50.48 E-value=72 Score=29.64 Aligned_cols=101 Identities=13% Similarity=0.065 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHH----------------Hhh-CCCCcEEEEEEEcCCCcccCCCcH
Q 025860 73 DFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELL----------------EEE-NIKIPAWFSFNSKDGVNVVSGDSL 135 (247)
Q Consensus 73 ~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~----------------~~~-~~~~pv~is~~~~~~~~l~~G~~~ 135 (247)
+.|+...+...+.|++++. |+.+...+..+.+++ ++. ..++||+++- +.-.+-+.+
T Consensus 169 e~l~~L~~~~~~~Gl~~~t--~v~d~~~~~~l~~~vd~lkI~s~~~~n~~LL~~~a~~gkPVilk~-----G~~~t~~e~ 241 (360)
T PRK12595 169 EGLKILKQVADEYGLAVIS--EIVNPADVEVALDYVDVIQIGARNMQNFELLKAAGRVNKPVLLKR-----GLSATIEEF 241 (360)
T ss_pred HHHHHHHHHHHHcCCCEEE--eeCCHHHHHHHHHhCCeEEECcccccCHHHHHHHHccCCcEEEeC-----CCCCCHHHH
Confidence 3455555556667777664 667777766665432 111 1257887664 221233445
Q ss_pred HHHHHHHHhCCCCeEEEEc-CCC--h----h-HHHHHHHHHHhhcCCCEEEEe
Q 025860 136 LECASIAESCKRVVSVGIN-CTP--P----R-FISGLILIIKKVTAKPILIYP 180 (247)
Q Consensus 136 ~~~~~~~~~~~~~~avG~N-C~~--p----~-~~~~~l~~l~~~~~~pl~vyP 180 (247)
..+++.+....+-..+.+- |+. | . .=+..+..|++..+.|+++=|
T Consensus 242 ~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~~~PV~~d~ 294 (360)
T PRK12595 242 IYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQETHLPVMVDV 294 (360)
T ss_pred HHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHhCCCEEEeC
Confidence 5567777653333566665 853 2 1 225666777776778876534
No 447
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=50.36 E-value=58 Score=27.33 Aligned_cols=42 Identities=2% Similarity=-0.146 Sum_probs=33.4
Q ss_pred ccCCCcHHHHHHHHHhCCCCeEEEEcCC---ChhHHHHHHHHHHhh
Q 025860 129 VVSGDSLLECASIAESCKRVVSVGINCT---PPRFISGLILIIKKV 171 (247)
Q Consensus 129 l~~G~~~~~~~~~~~~~~~~~avG~NC~---~p~~~~~~l~~l~~~ 171 (247)
|-...|+++.++.+.+ .+++.||+.|+ ....+..+++.+++.
T Consensus 118 LG~~vp~e~~v~~~~~-~~pd~v~lS~~~~~~~~~~~~~i~~l~~~ 162 (197)
T TIGR02370 118 LGRDVPIDTVVEKVKK-EKPLMLTGSALMTTTMYGQKDINDKLKEE 162 (197)
T ss_pred CCCCCCHHHHHHHHHH-cCCCEEEEccccccCHHHHHHHHHHHHHc
Confidence 3356889999999987 68999999996 346677888888775
No 448
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=50.21 E-value=1.3e+02 Score=25.98 Aligned_cols=105 Identities=17% Similarity=0.222 Sum_probs=56.5
Q ss_pred CcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCCChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccc
Q 025860 115 IPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTPPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWV 194 (247)
Q Consensus 115 ~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~ 194 (247)
--+++|..--++.-| +...+-.++.......| ++|+-|.+.+. ++.++...+.|++-----. |++. +.+
T Consensus 15 gglIVSCQal~~~pl-~~~~iv~~mA~Aa~~gG--AvgiR~~gv~d----Ikai~~~v~vPIIGIiKrd--~~~s-~v~- 83 (229)
T COG3010 15 GGLIVSCQALPGEPL-DSPEIVAAMALAAEQGG--AVGIRIEGVED----IKAIRAVVDVPIIGIIKRD--YPDS-PVR- 83 (229)
T ss_pred CCeEEEeecCCCCCC-cchhHHHHHHHHHHhCC--cceEeecchhh----HHHHHhhCCCCeEEEEecC--CCCC-Cce-
Confidence 356777765444444 33333333333322234 55555555544 3446667899974111000 1111 111
Q ss_pred cCCCCChHHHHHHHHHHHHcCCeEEe--ecCCCChH-HHHHHHHH
Q 025860 195 QNTGVSDEDFVSYVSKWCEVGASLVG--GCCRTTPN-TIKGIYRT 236 (247)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~G~~iIG--GCCGt~P~-hI~al~~~ 236 (247)
++| |.+.+..+.+.|+.||- +.++..|+ .++.+-+.
T Consensus 84 ----ITp--tlkeVd~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~ 122 (229)
T COG3010 84 ----ITP--TLKEVDALAEAGADIIAFDATDRPRPDGDLEELIAR 122 (229)
T ss_pred ----ecc--cHHHHHHHHHCCCcEEEeecccCCCCcchHHHHHHH
Confidence 334 77888999999999975 56667777 66666544
No 449
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=49.91 E-value=81 Score=27.83 Aligned_cols=62 Identities=16% Similarity=0.053 Sum_probs=35.8
Q ss_pred CCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcC-C-C--h----hHHHHHHHHHHhhcCCCEEEEe
Q 025860 114 KIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINC-T-P--P----RFISGLILIIKKVTAKPILIYP 180 (247)
Q Consensus 114 ~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC-~-~--p----~~~~~~l~~l~~~~~~pl~vyP 180 (247)
++||+++- +.-.+-+.+..+++.+....+-..+.+-| + . | ..=+..+..|++..+.|+++-|
T Consensus 132 gkPVilk~-----G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds 201 (260)
T TIGR01361 132 GKPVLLKR-----GMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDP 201 (260)
T ss_pred CCcEEEeC-----CCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcC
Confidence 57888764 22112334556777776533345666777 3 2 2 2235667777776678876634
No 450
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=49.60 E-value=37 Score=30.25 Aligned_cols=63 Identities=19% Similarity=0.108 Sum_probs=31.5
Q ss_pred HhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHH---HHHHHhCCCCeEEEEcCC
Q 025860 82 LVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLEC---ASIAESCKRVVSVGINCT 156 (247)
Q Consensus 82 l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~---~~~~~~~~~~~avG~NC~ 156 (247)
|.+..+|++.+=|-++++ ...++++++. +++|++ .. + -..+++++ ++..++..-...||+|-.
T Consensus 63 l~~~~iD~V~Iatp~~~H-~e~~~~AL~a---GkhVl~----EK-P---la~t~~ea~~l~~~a~~~~~~l~v~~~~R 128 (342)
T COG0673 63 LADPDIDAVYIATPNALH-AELALAALEA---GKHVLC----EK-P---LALTLEEAEELVELARKAGVKLMVGFNRR 128 (342)
T ss_pred hcCCCCCEEEEcCCChhh-HHHHHHHHhc---CCEEEE----cC-C---CCCCHHHHHHHHHHHHHcCCceeeehhhh
Confidence 334457888877744443 4555665553 345542 11 1 23333333 333333333467777776
No 451
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=49.36 E-value=1.9e+02 Score=25.78 Aligned_cols=28 Identities=14% Similarity=0.118 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEecC
Q 025860 66 ITVETLKDFHRRRVQVLVESAPDLIAFETI 95 (247)
Q Consensus 66 ~s~~e~~~~~~~q~~~l~~~gvD~i~~ET~ 95 (247)
.+.++++..-+..++-++..|| ..+|..
T Consensus 65 ~t~e~l~~~~~~~~~e~~~~Gv--~y~E~r 92 (324)
T TIGR01430 65 RTEDDFKRLAYEYVEKAAKDGV--VYAEVF 92 (324)
T ss_pred CCHHHHHHHHHHHHHHHHHcCC--EEEEEE
Confidence 3678888888888888888999 466754
No 452
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=49.21 E-value=1.8e+02 Score=25.35 Aligned_cols=115 Identities=15% Similarity=0.235 Sum_probs=57.3
Q ss_pred EEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEecCCC---------HHHHH---HHHHHH
Q 025860 41 VAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPN---------KIEAQ---AYAELL 108 (247)
Q Consensus 41 VaGsiGP~g~~l~~g~eY~g~y~~~~s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~---------~~E~~---aa~~~~ 108 (247)
|.|-+=.++..+.+|.. + .+.+.+.+ +++.+++.|+|+|=+-.-+. ..|.+ .+++.+
T Consensus 3 imGilN~t~dsf~~~~~----~---~~~~~~~~----~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l 71 (258)
T cd00423 3 IMGILNVTPDSFSDGGK----F---LSLDKALE----HARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRAL 71 (258)
T ss_pred EEEEecCCCCchhhccc----c---CCHHHHHH----HHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 45555555544433322 1 24555555 67777889999997765444 34444 445555
Q ss_pred HhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCe-EEEEcCCC-hhHHHHHHHHHHhhcCCCEEEEeCCCC
Q 025860 109 EEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVV-SVGINCTP-PRFISGLILIIKKVTAKPILIYPNSGE 184 (247)
Q Consensus 109 ~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-avG~NC~~-p~~~~~~l~~l~~~~~~pl~vyPNaG~ 184 (247)
++.. +.| +|+... . .++++...+. +++ .-.++... .+.+.++++ + .+.|+++.++.+.
T Consensus 72 ~~~~-~~p--iSIDT~---------~-~~v~~aaL~~-g~~iINdis~~~~~~~~~~l~~---~-~~~~vV~m~~~~~ 131 (258)
T cd00423 72 AGEP-DVP--ISVDTF---------N-AEVAEAALKA-GADIINDVSGGRGDPEMAPLAA---E-YGAPVVLMHMDGT 131 (258)
T ss_pred HhcC-CCe--EEEeCC---------c-HHHHHHHHHh-CCCEEEeCCCCCCChHHHHHHH---H-cCCCEEEECcCCC
Confidence 5432 344 566432 1 2233333332 233 22233321 133444433 2 3689999987664
No 453
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=49.09 E-value=1.9e+02 Score=26.20 Aligned_cols=86 Identities=15% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEc
Q 025860 75 HRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGIN 154 (247)
Q Consensus 75 ~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~N 154 (247)
|.++++.+++.+++++.+ ++..+. +..++.+++. +..+|..++ ++.++....+. ++|+|=+-
T Consensus 102 ~~~~~~~~~~~~~~~v~~-~~G~p~--~~~i~~l~~~--gi~v~~~v~-----------s~~~A~~a~~~--G~D~iv~q 163 (330)
T PF03060_consen 102 FEEQLDVALEAKPDVVSF-GFGLPP--PEVIERLHAA--GIKVIPQVT-----------SVREARKAAKA--GADAIVAQ 163 (330)
T ss_dssp HHHHHHHHHHS--SEEEE-ESSSC---HHHHHHHHHT--T-EEEEEES-----------SHHHHHHHHHT--T-SEEEEE
T ss_pred cccccccccccceEEEEe-ecccch--HHHHHHHHHc--CCccccccC-----------CHHHHHHhhhc--CCCEEEEe
Q ss_pred CC--------ChhHHHHHHHHHHhhcCCCEEE
Q 025860 155 CT--------PPRFISGLILIIKKVTAKPILI 178 (247)
Q Consensus 155 C~--------~p~~~~~~l~~l~~~~~~pl~v 178 (247)
.. ....+..|+..+.+..++||++
T Consensus 164 G~eAGGH~g~~~~~~~~L~~~v~~~~~iPVia 195 (330)
T PF03060_consen 164 GPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIA 195 (330)
T ss_dssp -TTSSEE---SSG-HHHHHHHHHHH-SS-EEE
T ss_pred ccccCCCCCccccceeeHHHHHhhhcCCcEEE
No 454
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=48.93 E-value=1.6e+02 Score=28.04 Aligned_cols=58 Identities=12% Similarity=-0.049 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHhhCCC-CcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCC
Q 025860 96 PNKIEAQAYAELLEEENIK-IPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT 156 (247)
Q Consensus 96 ~~~~E~~aa~~~~~~~~~~-~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~ 156 (247)
..-+.++.+++-+.+.... .-+.|--+|.. .. -|++++.+++.+.+..+...|-++|.
T Consensus 100 Gg~~~L~~aI~~~~~~~~p~~~I~V~~tC~~-~l--iGdDi~~v~~~~~~~~~~pvi~v~t~ 158 (443)
T TIGR01862 100 GGEKKLKKLIHEAFTEFPLIKAISVYATCPT-GL--IGDDIEAVAKEVSKEIGKDVVAVNCP 158 (443)
T ss_pred CcHHHHHHHHHHHHHhCCccceEEEECCChH-HH--hccCHHHHHHHHHHhcCCCEEEEecC
Confidence 4455555555544433211 12333333433 22 39999999998865345778999994
No 455
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=48.92 E-value=1.7e+02 Score=25.05 Aligned_cols=142 Identities=11% Similarity=0.101 Sum_probs=70.8
Q ss_pred HHHHHHHhcCCCCEEEE-ecCCCHHH----HHHHHHHHHhhCCCCcEEEEEEEc-------CCCcccCC-CcHHHHHHHH
Q 025860 76 RRRVQVLVESAPDLIAF-ETIPNKIE----AQAYAELLEEENIKIPAWFSFNSK-------DGVNVVSG-DSLLECASIA 142 (247)
Q Consensus 76 ~~q~~~l~~~gvD~i~~-ET~~~~~E----~~aa~~~~~~~~~~~pv~is~~~~-------~~~~l~~G-~~~~~~~~~~ 142 (247)
..+++.+++.||+++-+ |--.+-.| ++.+.+..+++ +.|++|.-.++ +.-++-.. .++.++.+.+
T Consensus 24 ~~~ve~al~~Gv~~vQlR~K~~~~~~~~~~a~~~~~lc~~~--~v~liINd~~dlA~~~~AdGVHlGq~D~~~~~ar~~~ 101 (211)
T COG0352 24 LEWVEAALKGGVTAVQLREKDLSDEEYLALAEKLRALCQKY--GVPLIINDRVDLALAVGADGVHLGQDDMPLAEARELL 101 (211)
T ss_pred HHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHHHHHHHh--CCeEEecCcHHHHHhCCCCEEEcCCcccchHHHHHhc
Confidence 34777788899999865 43333333 23334444544 57888765542 11123222 3444444433
Q ss_pred HhCCCCeEEEEcCCChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEEeec
Q 025860 143 ESCKRVVSVGINCTPPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGC 222 (247)
Q Consensus 143 ~~~~~~~avG~NC~~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iIGGC 222 (247)
. .=.-||+.|.+.+.+..+.+.- --.++ .|.+|+..++.-.+. ... ++...+.+.....+-.||
T Consensus 102 ~---~~~iIG~S~h~~eea~~A~~~g----~DYv~----~GpifpT~tK~~~~~--~G~-~~l~~~~~~~~iP~vAIG-- 165 (211)
T COG0352 102 G---PGLIIGLSTHDLEEALEAEELG----ADYVG----LGPIFPTSTKPDAPP--LGL-EGLREIRELVNIPVVAIG-- 165 (211)
T ss_pred C---CCCEEEeecCCHHHHHHHHhcC----CCEEE----ECCcCCCCCCCCCCc--cCH-HHHHHHHHhCCCCEEEEc--
Confidence 2 1247999998776655553321 11122 244444332211111 122 233333333333455566
Q ss_pred CCCChHHHHHHHHH
Q 025860 223 CRTTPNTIKGIYRT 236 (247)
Q Consensus 223 CGt~P~hI~al~~~ 236 (247)
|++++.+..+.+.
T Consensus 166 -Gi~~~nv~~v~~~ 178 (211)
T COG0352 166 -GINLENVPEVLEA 178 (211)
T ss_pred -CCCHHHHHHHHHh
Confidence 6888888887654
No 456
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=48.63 E-value=59 Score=27.76 Aligned_cols=51 Identities=18% Similarity=0.289 Sum_probs=39.5
Q ss_pred CcHHHHHHHHHhCCCCeEEEEcCC---ChhHHHHHHHHHHhhcCCCEEEEeCCCC
Q 025860 133 DSLLECASIAESCKRVVSVGINCT---PPRFISGLILIIKKVTAKPILIYPNSGE 184 (247)
Q Consensus 133 ~~~~~~~~~~~~~~~~~avG~NC~---~p~~~~~~l~~l~~~~~~pl~vyPNaG~ 184 (247)
+.+.+.+..+.+ .+.|+|-+--+ ..+.+.++++.+++..++|+++.|....
T Consensus 11 e~~~~ia~~v~~-~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lPvilfp~~~~ 64 (205)
T TIGR01769 11 DEIEKIAKNAKD-AGTDAIMVGGSLGIVESNLDQTVKKIKKITNLPVILFPGNVN 64 (205)
T ss_pred HHHHHHHHHHHh-cCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCCEEEECCCcc
Confidence 455666666666 57899888754 4688999999999988999999987654
No 457
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=48.59 E-value=1.6e+02 Score=24.63 Aligned_cols=65 Identities=9% Similarity=0.016 Sum_probs=44.6
Q ss_pred CCcEEEEEEEc--CCCcccCCCcHHHHHHHHHhCCCCeEEEEcCCC--hhHHHHHHHHHHhhcCCCEEEE
Q 025860 114 KIPAWFSFNSK--DGVNVVSGDSLLECASIAESCKRVVSVGINCTP--PRFISGLILIIKKVTAKPILIY 179 (247)
Q Consensus 114 ~~pv~is~~~~--~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~~--p~~~~~~l~~l~~~~~~pl~vy 179 (247)
+.||+..+.-. ..+.+.++.++.+.++.+.+ .|+++|=+++-. .......++.+++..+.|+.+.
T Consensus 10 ~~~vIae~k~~sp~~~~~~~~~~~~~~A~~~~~-~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~iPi~~~ 78 (217)
T cd00331 10 GLGVIAEVKRASPSKGLIREDFDPVEIAKAYEK-AGAAAISVLTEPKYFQGSLEDLRAVREAVSLPVLRK 78 (217)
T ss_pred CceEEEEecCCCCCCCcCCCCCCHHHHHHHHHH-cCCCEEEEEeCccccCCCHHHHHHHHHhcCCCEEEC
Confidence 47999999853 33557788889999998887 589999888631 1112245555555568898763
No 458
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=48.44 E-value=31 Score=27.23 Aligned_cols=39 Identities=13% Similarity=0.154 Sum_probs=29.0
Q ss_pred CChHHHHHHHHHHHHcCCeEEeecC--CCChHHHHHHHHHhhCC
Q 025860 199 VSDEDFVSYVSKWCEVGASLVGGCC--RTTPNTIKGIYRTLSNR 240 (247)
Q Consensus 199 ~~~~~~~~~~~~~~~~G~~iIGGCC--Gt~P~hI~al~~~l~~~ 240 (247)
.+|+++.+. +.+.++.+||-|. +++.+.++.+.+.|++.
T Consensus 40 ~s~e~~v~a---a~e~~adii~iSsl~~~~~~~~~~~~~~L~~~ 80 (132)
T TIGR00640 40 QTPEEIARQ---AVEADVHVVGVSSLAGGHLTLVPALRKELDKL 80 (132)
T ss_pred CCHHHHHHH---HHHcCCCEEEEcCchhhhHHHHHHHHHHHHhc
Confidence 357765554 5677999999887 56788888888888654
No 459
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=48.36 E-value=2.1e+02 Score=25.97 Aligned_cols=140 Identities=10% Similarity=0.109 Sum_probs=75.0
Q ss_pred HHHHHHHHHhcC-CCCEEEE-ecCC-------CHHHHH--------HHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHH
Q 025860 74 FHRRRVQVLVES-APDLIAF-ETIP-------NKIEAQ--------AYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLL 136 (247)
Q Consensus 74 ~~~~q~~~l~~~-gvD~i~~-ET~~-------~~~E~~--------aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~ 136 (247)
+..+.++..+++ |+|+|.+ ++.. +.++.+ -+++.+++.+ +.|++. +.| |.. .
T Consensus 156 ~~i~y~~~qiea~Gad~I~i~Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~-g~piil-H~c--------G~~-~ 224 (321)
T cd03309 156 AKLKLYERRIKHLEPDLLVYHDDLGSQKGSFISPATFREFILPRMQRIFDFLRSNT-SALIVH-HSC--------GAA-A 224 (321)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCccccCCccCHHHHHHHHHHHHHHHHHHHHhcc-CCceEE-EeC--------CCc-H
Confidence 334444455556 9999984 6544 344444 3344444432 345443 433 322 2
Q ss_pred HHHHHHHhCCCCeEEEEcCCChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHc--
Q 025860 137 ECASIAESCKRVVSVGINCTPPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEV-- 214 (247)
Q Consensus 137 ~~~~~~~~~~~~~avG~NC~~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 214 (247)
..+..+.+ .+++++++-... ..+..+ ++.....+.++-|--. ..+... .+|++..+.+++.++.
T Consensus 225 ~~l~~~~e-~g~dvl~~d~~~-~dl~ea----k~~~g~k~~l~GNlDp-------~~L~~~-~t~E~i~~~v~~~l~~~g 290 (321)
T cd03309 225 SLVPSMAE-MGVDSWNVVMTA-NNTAEL----RRLLGDKVVLAGAIDD-------VALDTA-TWPEEDARGVAKAAAECA 290 (321)
T ss_pred HHHHHHHH-cCCCEEEecCCC-CCHHHH----HHHhCCCeEEEcCCCh-------HHhcCC-CCHHHHHHHHHHHHHHhC
Confidence 34455555 467776654322 122223 2222334777777432 111111 1367788888888764
Q ss_pred --CCeEEeecCC----CChHHHHHHHHHhh
Q 025860 215 --GASLVGGCCR----TTPNTIKGIYRTLS 238 (247)
Q Consensus 215 --G~~iIGGCCG----t~P~hI~al~~~l~ 238 (247)
|--|..-+|+ .-|+-++++.+.++
T Consensus 291 ~~~~fIf~~~~~~~~~~~~~~~~~~~~~~~ 320 (321)
T cd03309 291 PIHPFISAPTAGLPFSIFPEVLRRVSAFLD 320 (321)
T ss_pred CCCCEEeCccCCCCcccCHHHHHHHHHhhc
Confidence 4557777777 34899999987764
No 460
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=48.30 E-value=1.2e+02 Score=27.97 Aligned_cols=100 Identities=14% Similarity=0.151 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHH-----------------HHhh-CCCCcEEEEEEEcCCCcccCCCc
Q 025860 73 DFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAEL-----------------LEEE-NIKIPAWFSFNSKDGVNVVSGDS 134 (247)
Q Consensus 73 ~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~-----------------~~~~-~~~~pv~is~~~~~~~~l~~G~~ 134 (247)
++|++..+...+.|++++ =|..+...+..+.+. +++. ..++|+++|- |. .+=+.
T Consensus 76 e~~~~L~~~~~~~Gi~~~--stpfd~~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilSt-----Gm-atl~E 147 (329)
T TIGR03569 76 EDHRELKEYCESKGIEFL--STPFDLESADFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILST-----GM-ATLEE 147 (329)
T ss_pred HHHHHHHHHHHHhCCcEE--EEeCCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEEC-----CC-CCHHH
Confidence 355656666666777665 365666655544321 1111 1268999876 22 12234
Q ss_pred HHHHHHHHHhCCCC--eEEEEcCCC--h---h-HHHHHHHHHHhhcCCCEEEEeC
Q 025860 135 LLECASIAESCKRV--VSVGINCTP--P---R-FISGLILIIKKVTAKPILIYPN 181 (247)
Q Consensus 135 ~~~~~~~~~~~~~~--~avG~NC~~--p---~-~~~~~l~~l~~~~~~pl~vyPN 181 (247)
+..+++.+...... ..+.+-|+. | + .=+..+..|++..+.|++ |+.
T Consensus 148 i~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~~pVG-~Sd 201 (329)
T TIGR03569 148 IEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFDLPVG-YSD 201 (329)
T ss_pred HHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhCCCEE-ECC
Confidence 55677777653222 378888973 2 2 236677788877788887 443
No 461
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=47.91 E-value=94 Score=29.24 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=15.6
Q ss_pred CCeEEeecCCCChHHHHHHHHHhh
Q 025860 215 GASLVGGCCRTTPNTIKGIYRTLS 238 (247)
Q Consensus 215 G~~iIGGCCGt~P~hI~al~~~l~ 238 (247)
.+++|||+.-+.+ ++..|++.|+
T Consensus 157 ~VNlig~~~~~~~-d~~el~~lL~ 179 (428)
T cd01965 157 KVNLLPGFPLTPG-DVREIKRILE 179 (428)
T ss_pred eEEEECCCCCCcc-CHHHHHHHHH
Confidence 4888998876543 5666666665
No 462
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=47.74 E-value=2e+02 Score=25.54 Aligned_cols=101 Identities=11% Similarity=-0.012 Sum_probs=56.2
Q ss_pred HHHHHhcCCCCEEEEecCC-----------CHHH----HHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHH
Q 025860 78 RVQVLVESAPDLIAFETIP-----------NKIE----AQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIA 142 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~-----------~~~E----~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~ 142 (247)
.++...++|+|.+-+-.-. +.+| ++.+++.+++.+ +.+-+++.-.......+-+-+.+.++.+
T Consensus 79 ~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G--~~v~~~~~d~~~~~r~~~~~~~~~~~~~ 156 (280)
T cd07945 79 SVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNG--IEVNIYLEDWSNGMRDSPDYVFQLVDFL 156 (280)
T ss_pred HHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCC--CEEEEEEEeCCCCCcCCHHHHHHHHHHH
Confidence 3555667899887655411 2233 333455556553 4444444321111111233455566666
Q ss_pred HhCCCCeEEEEcCC----ChhHHHHHHHHHHhhc-CCCEEEEeC
Q 025860 143 ESCKRVVSVGINCT----PPRFISGLILIIKKVT-AKPILIYPN 181 (247)
Q Consensus 143 ~~~~~~~avG~NC~----~p~~~~~~l~~l~~~~-~~pl~vyPN 181 (247)
.+ .+++-|.+-=+ .|..+..+++.+++.. +.||.+...
T Consensus 157 ~~-~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~~~~~i~~H~H 199 (280)
T cd07945 157 SD-LPIKRIMLPDTLGILSPFETYTYISDMVKRYPNLHFDFHAH 199 (280)
T ss_pred HH-cCCCEEEecCCCCCCCHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 55 57887776544 3999999999987654 466765543
No 463
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=47.66 E-value=2e+02 Score=25.37 Aligned_cols=40 Identities=10% Similarity=0.143 Sum_probs=30.8
Q ss_pred hcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEE
Q 025860 83 VESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFN 122 (247)
Q Consensus 83 ~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~ 122 (247)
+++|+|+|+=--+.+.+-+...++.+++.+.++|++..+.
T Consensus 154 ~~aGA~f~iTQ~~fd~~~~~~~~~~~~~~gi~~PIi~Gi~ 193 (272)
T TIGR00676 154 VDAGADYAITQLFFDNDDYYRFVDRCRAAGIDVPIIPGIM 193 (272)
T ss_pred HHcCCCeEeeccccCHHHHHHHHHHHHHcCCCCCEecccC
Confidence 3589998887777777777777887877776788887774
No 464
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=47.65 E-value=2.7e+02 Score=26.85 Aligned_cols=31 Identities=13% Similarity=0.244 Sum_probs=23.3
Q ss_pred CCCEEEEecCC-CHHHHHHHHHHHHhhCCCCcE
Q 025860 86 APDLIAFETIP-NKIEAQAYAELLEEENIKIPA 117 (247)
Q Consensus 86 gvD~i~~ET~~-~~~E~~aa~~~~~~~~~~~pv 117 (247)
++|+|.+-..+ +.+.+..+++.+++.. +.|+
T Consensus 127 ~AD~IaL~~~s~dp~~v~~~Vk~V~~~~-dvPL 158 (450)
T PRK04165 127 KLDMVALRNASGDPEKFAKAVKKVAETT-DLPL 158 (450)
T ss_pred cCCEEEEeCCCCCHHHHHHHHHHHHHhc-CCCE
Confidence 39999999877 4666888888887742 6775
No 465
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=47.52 E-value=56 Score=25.11 Aligned_cols=48 Identities=19% Similarity=0.154 Sum_probs=34.9
Q ss_pred cHHHHHHHHHhCCCCeEEEEcCC-ChhHHHHHHHHHHhhcCCCEEEEeCC
Q 025860 134 SLLECASIAESCKRVVSVGINCT-PPRFISGLILIIKKVTAKPILIYPNS 182 (247)
Q Consensus 134 ~~~~~~~~~~~~~~~~avG~NC~-~p~~~~~~l~~l~~~~~~pl~vyPNa 182 (247)
.+.+.++.+.+ .++.|++++.. ....+.+-+-...+..+.||+..|..
T Consensus 60 ~~~~~i~~L~~-~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPli~ip~~ 108 (123)
T PF07905_consen 60 ELREFIRELAE-KGAAGLGIKTGRYLDEIPEEIIELADELGLPLIEIPWE 108 (123)
T ss_pred HHHHHHHHHHH-CCCeEEEEeccCccccCCHHHHHHHHHcCCCEEEeCCC
Confidence 46778888877 68999999997 43344444445555568999999974
No 466
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=47.22 E-value=3.5e+02 Score=28.05 Aligned_cols=39 Identities=18% Similarity=0.162 Sum_probs=30.0
Q ss_pred HHHHHHHHHHh---c-CCCCE--EEEecCCCHHHHHHHHHHHHhh
Q 025860 73 DFHRRRVQVLV---E-SAPDL--IAFETIPNKIEAQAYAELLEEE 111 (247)
Q Consensus 73 ~~~~~q~~~l~---~-~gvD~--i~~ET~~~~~E~~aa~~~~~~~ 111 (247)
+.|+.|++++. + .|++- |+|=.+.+.+|++.+++.++..
T Consensus 617 ~lf~~qlraI~rald~~G~~~~~ImvPmV~s~eEa~~~~~~~~~~ 661 (795)
T PRK06464 617 EAFALECEAIKRVREEMGLTNVEVMIPFVRTVEEAEKVIELLAEN 661 (795)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHh
Confidence 45666666654 4 57777 8889999999999999988754
No 467
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=46.84 E-value=50 Score=28.99 Aligned_cols=28 Identities=11% Similarity=0.272 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCeEEEEecCCccc
Q 025860 3 RRSVEIAREARDMYFERCSKSSCDSVTDDRIPKHRPILVAASVGSYGA 50 (247)
Q Consensus 3 ~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~ 50 (247)
..++++-+.||+.+ .+..+.|++=|+|.
T Consensus 205 eE~i~v~~~AR~~f--------------------~~pv~iGCmrP~Ge 232 (275)
T COG1856 205 EEAIKVVKYARKKF--------------------PNPVSIGCMRPRGE 232 (275)
T ss_pred HHHHHHHHHHHHhC--------------------CCCeeEeecCcCch
Confidence 56788888888876 13678999999984
No 468
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=46.82 E-value=1.8e+02 Score=24.64 Aligned_cols=38 Identities=16% Similarity=0.097 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHh
Q 025860 67 TVETLKDFHRRRVQVLVESAPDLIAFETIPNKIEAQAYAELLEE 110 (247)
Q Consensus 67 s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~ 110 (247)
+.+++.+ .++.+++.|+.+|=+ |+.+..-.+ .++.+++
T Consensus 20 ~~~~~~~----~~~a~~~gGi~~iEv-t~~~~~~~~-~i~~l~~ 57 (206)
T PRK09140 20 TPDEALA----HVGALIEAGFRAIEI-PLNSPDPFD-SIAALVK 57 (206)
T ss_pred CHHHHHH----HHHHHHHCCCCEEEE-eCCCccHHH-HHHHHHH
Confidence 4455544 899999999997622 444444333 4444443
No 469
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=46.75 E-value=2.7e+02 Score=26.62 Aligned_cols=148 Identities=9% Similarity=0.005 Sum_probs=75.7
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEE-----EEec-CCCHH-HHHHHHHHHHhhC--CCCcEEEEEEEcCCCcccCCCcHH
Q 025860 66 ITVETLKDFHRRRVQVLVESAPDLI-----AFET-IPNKI-EAQAYAELLEEEN--IKIPAWFSFNSKDGVNVVSGDSLL 136 (247)
Q Consensus 66 ~s~~e~~~~~~~q~~~l~~~gvD~i-----~~ET-~~~~~-E~~aa~~~~~~~~--~~~pv~is~~~~~~~~l~~G~~~~ 136 (247)
+|+++..+ ++..+...|+|+| +... +.-++ -+++..+++++.. .+...+-++.+ +| +..
T Consensus 173 Lsp~~~a~----~~y~~~~GGvD~IKDDE~l~~q~f~p~~eRv~~~~~ai~~a~~eTG~~~~ya~Ni-------T~-~~~ 240 (424)
T cd08208 173 LPPGEFAE----LGYQSWLGGLDIAKDDEMLADVDWCPLEERAALLGKARRRAEAETGVPKIYLANI-------TD-EVD 240 (424)
T ss_pred CCHHHHHH----HHHHHHcCCcccccccccccCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEc-------cC-CHH
Confidence 47777666 4555566999997 3332 22223 3445555555421 12344444443 23 234
Q ss_pred HH---HHHHHhCCCCeEEEEcCC--ChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHH
Q 025860 137 EC---ASIAESCKRVVSVGINCT--PPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKW 211 (247)
Q Consensus 137 ~~---~~~~~~~~~~~avG~NC~--~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 211 (247)
+. ++.+.+ .|+.++-+|-. +. ..++.+++..+.||.+.|+.--.+... +...++..- +.+-|
T Consensus 241 em~~ra~~a~~-~G~~~vmv~~~~~G~----~al~~L~~~~~l~ihaHra~~ga~~r~-----~~~Gis~~v---l~Kl~ 307 (424)
T cd08208 241 RLMELHDVAVR-NGANALLINAMPVGL----SAVRMLRKHAQVPLIAHFPFIASFSRL-----EKYGIHSRV---MTKLQ 307 (424)
T ss_pred HHHHHHHHHHH-hCCCEEEEeeecccH----HHHHHHHhcCCCeEEeccCccccccCC-----CCCCCcHHH---HHHHH
Confidence 44 333444 47777777774 43 345566666688999999853222211 111233322 33334
Q ss_pred HHcCCeE-----EeecCCCChHHHHHHHHHhh
Q 025860 212 CEVGASL-----VGGCCRTTPNTIKGIYRTLS 238 (247)
Q Consensus 212 ~~~G~~i-----IGGCCGt~P~hI~al~~~l~ 238 (247)
+=.|+.. .||==.+..+....++..+.
T Consensus 308 RLaGaD~ih~~~~gg~~~~~~~~~~~~~~~~~ 339 (424)
T cd08208 308 RLAGLDVVIMPGFGPRMMTPEEEVLECVIACL 339 (424)
T ss_pred HHcCCCeeeccCCCCCccchHHHHHHHHHHHh
Confidence 4455443 23444455666666665544
No 470
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=46.72 E-value=70 Score=31.83 Aligned_cols=64 Identities=20% Similarity=0.168 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhcCCCCEEEEe-cCC--CHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHH
Q 025860 73 DFHRRRVQVLVESAPDLIAFE-TIP--NKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAE 143 (247)
Q Consensus 73 ~~~~~q~~~l~~~gvD~i~~E-T~~--~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~ 143 (247)
++|.+.++.+.+.|+|.|.+= |.. .+.++..+++.+++.. ++| +.+.+.++ .|..++..+..+.
T Consensus 154 ~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~-~~p--i~~H~Hnt----~Gla~An~laAv~ 220 (592)
T PRK09282 154 EKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEV-DLP--VQLHSHCT----SGLAPMTYLKAVE 220 (592)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhC-CCe--EEEEEcCC----CCcHHHHHHHHHH
Confidence 567778888889999999775 433 4678888888888753 344 56666554 5666676666664
No 471
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=46.62 E-value=1.8e+02 Score=24.70 Aligned_cols=109 Identities=17% Similarity=0.126 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEecCCCHH--HHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHh
Q 025860 67 TVETLKDFHRRRVQVLVESAPDLIAFETIPNKI--EAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAES 144 (247)
Q Consensus 67 s~~e~~~~~~~q~~~l~~~gvD~i~~ET~~~~~--E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~ 144 (247)
+.+|+... ++-++.+.+.|+|-|+|=-+..-. .....-+++.... ++|+.+--.|+. +.+ ..++++.+.+
T Consensus 67 s~~E~~~M-~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~-~~~~tFHRAfD~---~~d---~~~al~~L~~ 138 (201)
T PF03932_consen 67 SDEEIEIM-KEDIRMLRELGADGFVFGALTEDGEIDEEALEELIEAAG-GMPVTFHRAFDE---VPD---PEEALEQLIE 138 (201)
T ss_dssp -HHHHHHH-HHHHHHHHHTT-SEEEE--BETTSSB-HHHHHHHHHHHT-TSEEEE-GGGGG---SST---HHHHHHHHHH
T ss_pred CHHHHHHH-HHHHHHHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcC-CCeEEEeCcHHH---hCC---HHHHHHHHHh
Confidence 66777664 447888889999999987664322 2233333444443 466654444432 222 6778888877
Q ss_pred CCCCeEEEEcCCC--hhHHHHHHHHHHhhcCCCEEEEeCCCC
Q 025860 145 CKRVVSVGINCTP--PRFISGLILIIKKVTAKPILIYPNSGE 184 (247)
Q Consensus 145 ~~~~~avG~NC~~--p~~~~~~l~~l~~~~~~pl~vyPNaG~ 184 (247)
. +++.|.-.-.. ...-.+.|+.+.+..+..+-+.|-+|.
T Consensus 139 l-G~~rVLTSGg~~~a~~g~~~L~~lv~~a~~~i~Im~GgGv 179 (201)
T PF03932_consen 139 L-GFDRVLTSGGAPTALEGIENLKELVEQAKGRIEIMPGGGV 179 (201)
T ss_dssp H-T-SEEEESTTSSSTTTCHHHHHHHHHHHTTSSEEEEESS-
T ss_pred c-CCCEEECCCCCCCHHHHHHHHHHHHHHcCCCcEEEecCCC
Confidence 3 78877655432 111133444444444556778888875
No 472
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=46.53 E-value=92 Score=28.93 Aligned_cols=63 Identities=16% Similarity=0.145 Sum_probs=39.5
Q ss_pred CCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcC-----C-C-h--hHHHHHHHHHHhhcCCCEEEEeC
Q 025860 114 KIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINC-----T-P-P--RFISGLILIIKKVTAKPILIYPN 181 (247)
Q Consensus 114 ~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC-----~-~-p--~~~~~~l~~l~~~~~~pl~vyPN 181 (247)
++||+++= +.-.+=+.+..+++.+....+-..+.+.| . . | ..=+..+..+++..+.|+++=|.
T Consensus 208 ~kPVllk~-----G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~~lPVi~Dps 279 (352)
T PRK13396 208 DKPVLLKR-----GMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLTHLPIMIDPS 279 (352)
T ss_pred CCeEEEeC-----CCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhhCCCEEECCc
Confidence 58888764 22123344556777776544557888999 3 1 2 11255667777777899988776
No 473
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=46.46 E-value=73 Score=29.03 Aligned_cols=16 Identities=13% Similarity=0.279 Sum_probs=10.8
Q ss_pred HHHHHHhcCCCCEEEE
Q 025860 77 RRVQVLVESAPDLIAF 92 (247)
Q Consensus 77 ~q~~~l~~~gvD~i~~ 92 (247)
++++.+.++|+|+|.+
T Consensus 147 ~~A~~l~~aGaD~I~v 162 (325)
T cd00381 147 EAARDLIDAGADGVKV 162 (325)
T ss_pred HHHHHHHhcCCCEEEE
Confidence 3455566778888875
No 474
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=46.38 E-value=1.8e+02 Score=24.67 Aligned_cols=128 Identities=11% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCCEEEEe-cCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeE
Q 025860 72 KDFHRRRVQVLVESAPDLIAFE-TIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVS 150 (247)
Q Consensus 72 ~~~~~~q~~~l~~~gvD~i~~E-T~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~a 150 (247)
.+.-.+.+++|.+.|+..| | |+.+..-.+.+-++.++++ + +++.. +...+-+.+.++++ .|+..
T Consensus 15 ~~~a~~ia~al~~gGi~~i--Eit~~tp~a~~~I~~l~~~~~-~--~~vGA-----GTVl~~e~a~~ai~-----aGA~F 79 (201)
T PRK06015 15 VEHAVPLARALAAGGLPAI--EITLRTPAALDAIRAVAAEVE-E--AIVGA-----GTILNAKQFEDAAK-----AGSRF 79 (201)
T ss_pred HHHHHHHHHHHHHCCCCEE--EEeCCCccHHHHHHHHHHHCC-C--CEEee-----EeCcCHHHHHHHHH-----cCCCE
Q ss_pred EEEcCCChhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcC---CeEEeecCCCCh
Q 025860 151 VGINCTPPRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVG---ASLVGGCCRTTP 227 (247)
Q Consensus 151 vG~NC~~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G---~~iIGGCCGt~P 227 (247)
+---|..++.+....+ .-+...|-+ .||.+..+ ..++| +++.=+-.-.+|
T Consensus 80 ivSP~~~~~vi~~a~~-------~~i~~iPG~----------------~TptEi~~----A~~~Ga~~vK~FPa~~~GG~ 132 (201)
T PRK06015 80 IVSPGTTQELLAAAND-------SDVPLLPGA----------------ATPSEVMA----LREEGYTVLKFFPAEQAGGA 132 (201)
T ss_pred EECCCCCHHHHHHHHH-------cCCCEeCCC----------------CCHHHHHH----HHHCCCCEEEECCchhhCCH
Q ss_pred HHHHHHHHHhhCCC
Q 025860 228 NTIKGIYRTLSNRS 241 (247)
Q Consensus 228 ~hI~al~~~l~~~~ 241 (247)
.||++|+.-+...+
T Consensus 133 ~yikal~~plp~~~ 146 (201)
T PRK06015 133 AFLKALSSPLAGTF 146 (201)
T ss_pred HHHHHHHhhCCCCc
No 475
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=46.28 E-value=1.9e+02 Score=25.06 Aligned_cols=66 Identities=15% Similarity=0.268 Sum_probs=39.4
Q ss_pred HHHHHhcCCCCEEEE--ecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcC
Q 025860 78 RVQVLVESAPDLIAF--ETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINC 155 (247)
Q Consensus 78 q~~~l~~~gvD~i~~--ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC 155 (247)
.++.|.++|+|+|-| |.-+++ ...++.+|+.+ +..-++| ..+++++..-..+.+..-+..+.+|=
T Consensus 76 ~i~~fa~agad~It~H~E~~~~~---~r~i~~Ik~~G--~kaGv~l--------nP~Tp~~~i~~~l~~vD~VllMsVnP 142 (220)
T COG0036 76 YIEAFAKAGADIITFHAEATEHI---HRTIQLIKELG--VKAGLVL--------NPATPLEALEPVLDDVDLVLLMSVNP 142 (220)
T ss_pred HHHHHHHhCCCEEEEEeccCcCH---HHHHHHHHHcC--CeEEEEE--------CCCCCHHHHHHHHhhCCEEEEEeECC
Confidence 566778899999875 644444 44566677663 4444444 35777776666555433344555555
Q ss_pred C
Q 025860 156 T 156 (247)
Q Consensus 156 ~ 156 (247)
.
T Consensus 143 G 143 (220)
T COG0036 143 G 143 (220)
T ss_pred C
Confidence 3
No 476
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=46.21 E-value=2.7e+02 Score=26.50 Aligned_cols=150 Identities=14% Similarity=0.084 Sum_probs=81.7
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEE-----EEe-cCCCHHH-HHHHHHHHHhhC--CCCcEEEEEEEcCCCcccCCCcHH
Q 025860 66 ITVETLKDFHRRRVQVLVESAPDLI-----AFE-TIPNKIE-AQAYAELLEEEN--IKIPAWFSFNSKDGVNVVSGDSLL 136 (247)
Q Consensus 66 ~s~~e~~~~~~~q~~~l~~~gvD~i-----~~E-T~~~~~E-~~aa~~~~~~~~--~~~pv~is~~~~~~~~l~~G~~~~ 136 (247)
+|+++..+ ++..+...|+|+| +.. ++.-++| +++..+++++.. .+.+.+-++.+ +|.+..
T Consensus 145 lsp~~~a~----~~y~~~~GGiD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~Ni-------T~~~~~ 213 (414)
T cd08206 145 LSPKEYAR----VVYEALRGGLDFVKDDENQNSQPFMRFEDRILFVAEAMDKAEAETGEAKGHYLNI-------TADTPE 213 (414)
T ss_pred CCHHHHHH----HHHHHHhcCCcccccCccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEecc-------CCCcHH
Confidence 47777666 5555666999998 222 3444443 444555554421 13444444433 344445
Q ss_pred HHHHH---HHhCCCCeEEEEcCC--ChhHHHHHHHHHHh---hcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHH
Q 025860 137 ECASI---AESCKRVVSVGINCT--PPRFISGLILIIKK---VTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYV 208 (247)
Q Consensus 137 ~~~~~---~~~~~~~~avG~NC~--~p~~~~~~l~~l~~---~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~ 208 (247)
+..+. +.+ .++.++.+|.. +.. .++.+++ ..+.||.+.|+.--.+... +...++..- +.
T Consensus 214 em~~ra~~~~~-~G~~~~mv~~~~~G~~----~l~~l~~~~~~~~l~ih~HrA~~ga~~~~-----~~~Gis~~v---l~ 280 (414)
T cd08206 214 EMIKRAEFAKE-LGSVIVMVDGVTAGWT----AIQSARRWCPDNGLALHAHRAGHAAFTRQ-----KNHGISMRV---LA 280 (414)
T ss_pred HHHHHHHHHHH-hCCcEEEEeeecccHH----HHHHHHHhccccCeEEEEccccceecccC-----CCCcCcHHH---HH
Confidence 54444 344 57888888874 443 3444444 2568999999864322111 112244433 33
Q ss_pred HHHHHcCCeE--E---eecCCCChHHHHHHHHHhhC
Q 025860 209 SKWCEVGASL--V---GGCCRTTPNTIKGIYRTLSN 239 (247)
Q Consensus 209 ~~~~~~G~~i--I---GGCCGt~P~hI~al~~~l~~ 239 (247)
+-|+=.|+.. + ||==..+++....+++.+..
T Consensus 281 kl~RLaGaD~ih~~t~~Gk~~~~~~~~~~~~~~l~~ 316 (414)
T cd08206 281 KLARLIGVDHIHTGTVVGKLEGDPSEVKGIADMLRE 316 (414)
T ss_pred HHHHHcCCCccccCCCccCCCCCHHHHHHHHHHhhc
Confidence 3355557553 3 44444778889999888644
No 477
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=46.20 E-value=1.8e+02 Score=24.57 Aligned_cols=111 Identities=16% Similarity=0.124 Sum_probs=57.9
Q ss_pred HHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCCC
Q 025860 78 RVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTP 157 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~~ 157 (247)
|++..+++|++|++- |.+.+ .+++.+++. ++|++-. -.++.|+...++ .|++.|=+-=.+
T Consensus 72 ~a~~a~~aGA~FivS---P~~~~--~v~~~~~~~--~i~~iPG-----------~~TptEi~~A~~--~G~~~vK~FPA~ 131 (196)
T PF01081_consen 72 QAEAAIAAGAQFIVS---PGFDP--EVIEYAREY--GIPYIPG-----------VMTPTEIMQALE--AGADIVKLFPAG 131 (196)
T ss_dssp HHHHHHHHT-SEEEE---SS--H--HHHHHHHHH--TSEEEEE-----------ESSHHHHHHHHH--TT-SEEEETTTT
T ss_pred HHHHHHHcCCCEEEC---CCCCH--HHHHHHHHc--CCcccCC-----------cCCHHHHHHHHH--CCCCEEEEecch
Confidence 455556677887762 44433 445556665 4676622 257788888775 477877765432
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEEeecCCCChH
Q 025860 158 PRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCRTTPN 228 (247)
Q Consensus 158 p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iIGGCCGt~P~ 228 (247)
.-.=.+.++.++.... .+-+.|-+|. ++ +.+.+|+++|+..+|+----.|.
T Consensus 132 ~~GG~~~ik~l~~p~p-~~~~~ptGGV---------------~~----~N~~~~l~ag~~~vg~Gs~L~~~ 182 (196)
T PF01081_consen 132 ALGGPSYIKALRGPFP-DLPFMPTGGV---------------NP----DNLAEYLKAGAVAVGGGSWLFPK 182 (196)
T ss_dssp TTTHHHHHHHHHTTTT-T-EEEEBSS-----------------T----TTHHHHHTSTTBSEEEESGGGSH
T ss_pred hcCcHHHHHHHhccCC-CCeEEEcCCC---------------CH----HHHHHHHhCCCEEEEECchhcCH
Confidence 1111234444443211 1344565553 22 24566899998777765554444
No 478
>PRK12435 ferrochelatase; Provisional
Probab=46.19 E-value=79 Score=28.69 Aligned_cols=70 Identities=13% Similarity=-0.061 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhh-cCCCEEEEeCCCCcccccccccccCCCCChHHHH-HHHHHHHHcCCeEEeecC-CCChHHHHHHHHH
Q 025860 160 FISGLILIIKKV-TAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFV-SYVSKWCEVGASLVGGCC-RTTPNTIKGIYRT 236 (247)
Q Consensus 160 ~~~~~l~~l~~~-~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~~iIGGCC-Gt~P~hI~al~~~ 236 (247)
.+...|+.+.+. --+.+++.|=++.. |. ..+-.+.. ++...+.+.|..+.=-+| ++.|.+|++|++.
T Consensus 233 ~t~d~l~~l~~~~G~k~v~vvpigFvs-Dh---------lETl~Eldie~~e~a~~~G~~~~r~~~lN~~p~fi~~La~l 302 (311)
T PRK12435 233 DVQDLTRDLYEEHGYKSFIYTPVGFVA-EH---------LEVLYDNDYECKVVTDEIGAKYYRPEMPNADPLFIDALADV 302 (311)
T ss_pred CHHHHHHHHHHhcCCceEEEECCchhh-hh---------HHHHHHHHHHHHHHHHHcCCcEEeccCCCCCHHHHHHHHHH
Confidence 345566666543 23568888866542 21 12233332 444557778988887667 9999999999998
Q ss_pred hhC
Q 025860 237 LSN 239 (247)
Q Consensus 237 l~~ 239 (247)
+.+
T Consensus 303 v~~ 305 (311)
T PRK12435 303 VLK 305 (311)
T ss_pred HHH
Confidence 864
No 479
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=45.99 E-value=2e+02 Score=25.04 Aligned_cols=77 Identities=22% Similarity=0.227 Sum_probs=44.0
Q ss_pred HHHHHhcCCCCEEEEecCCCHH-----HHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCC-CcHHHHHHHHHhCCCCeEE
Q 025860 78 RVQVLVESAPDLIAFETIPNKI-----EAQAYAELLEEENIKIPAWFSFNSKDGVNVVSG-DSLLECASIAESCKRVVSV 151 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~~-----E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G-~~~~~~~~~~~~~~~~~av 151 (247)
+++.+.+.|+|-|.+=-+.... ....+-+..+.. +.|++++= | .+++++.+.+ . .+++.|
T Consensus 35 ~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~~--~~pv~~gG----------Gi~s~~d~~~l~-~-~G~~~v 100 (258)
T PRK01033 35 AVRIFNEKEVDELIVLDIDASKRGSEPNYELIENLASEC--FMPLCYGG----------GIKTLEQAKKIF-S-LGVEKV 100 (258)
T ss_pred HHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHhC--CCCEEECC----------CCCCHHHHHHHH-H-CCCCEE
Confidence 4444556688777654333221 223333444433 57877542 3 3566666655 3 478888
Q ss_pred EEcCC---ChhHHHHHHHHH
Q 025860 152 GINCT---PPRFISGLILII 168 (247)
Q Consensus 152 G~NC~---~p~~~~~~l~~l 168 (247)
-+|.. .|+.+.++++.+
T Consensus 101 vigs~~~~~~~~~~~~~~~~ 120 (258)
T PRK01033 101 SINTAALEDPDLITEAAERF 120 (258)
T ss_pred EEChHHhcCHHHHHHHHHHh
Confidence 89984 577666666665
No 480
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=45.77 E-value=1.6e+02 Score=27.20 Aligned_cols=98 Identities=13% Similarity=0.134 Sum_probs=54.4
Q ss_pred HHHHhcCCCCEEEEecCCCHHHHHHHHHHH----------------Hhh-CCCCcEEEEEEEcCCCcccCCCcHHHHHHH
Q 025860 79 VQVLVESAPDLIAFETIPNKIEAQAYAELL----------------EEE-NIKIPAWFSFNSKDGVNVVSGDSLLECASI 141 (247)
Q Consensus 79 ~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~----------------~~~-~~~~pv~is~~~~~~~~l~~G~~~~~~~~~ 141 (247)
.+...+.|..++ =++.+...+..+.+.+ ++. ..++||+++= +.-.+=+.+..+++.
T Consensus 150 ~~~~~~~Gl~v~--tev~d~~~~~~l~~~vd~lqIgAr~~~N~~LL~~va~~~kPViLk~-----G~~~ti~E~l~A~e~ 222 (335)
T PRK08673 150 AEAREETGLPIV--TEVMDPRDVELVAEYVDILQIGARNMQNFDLLKEVGKTNKPVLLKR-----GMSATIEEWLMAAEY 222 (335)
T ss_pred HHHHHHcCCcEE--EeeCCHHHHHHHHHhCCeEEECcccccCHHHHHHHHcCCCcEEEeC-----CCCCCHHHHHHHHHH
Confidence 333444566555 3666666666654421 111 1257888654 111111234556666
Q ss_pred HHhCCCCeEEEEcC-C-C--h----hHHHHHHHHHHhhcCCCEEEEeCCC
Q 025860 142 AESCKRVVSVGINC-T-P--P----RFISGLILIIKKVTAKPILIYPNSG 183 (247)
Q Consensus 142 ~~~~~~~~avG~NC-~-~--p----~~~~~~l~~l~~~~~~pl~vyPNaG 183 (247)
+....+...+.+-| + . + ..-+..+..+++....|++++|+-+
T Consensus 223 i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~~lPVi~d~sH~ 272 (335)
T PRK08673 223 ILAEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKLTHLPVIVDPSHA 272 (335)
T ss_pred HHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHhcCCCEEEeCCCC
Confidence 66544557888887 2 1 1 1235566777777789999999754
No 481
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=45.74 E-value=1.6e+02 Score=27.72 Aligned_cols=57 Identities=9% Similarity=-0.098 Sum_probs=34.3
Q ss_pred CCHHHHHHHHH-HHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCCC
Q 025860 96 PNKIEAQAYAE-LLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTP 157 (247)
Q Consensus 96 ~~~~E~~aa~~-~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~~ 157 (247)
..-+.++.+++ +.++.. ..-+.|.-||..+- -|+++..+++.+.+ .++..|.+||.+
T Consensus 69 Gg~~kL~~~I~~~~~~~~-p~~I~V~ttC~~~~---IGdDi~~v~~~~~~-~~~~vi~v~t~g 126 (427)
T cd01971 69 GGEDRLRELIKSTLSIID-ADLFVVLTGCIAEI---IGDDVGAVVSEFQE-GGAPIVYLETGG 126 (427)
T ss_pred CCHHHHHHHHHHHHHhCC-CCEEEEEcCCcHHH---hhcCHHHHHHHhhh-cCCCEEEEECCC
Confidence 33444554444 344443 23444444454332 58999999988854 578899999953
No 482
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=45.67 E-value=81 Score=29.48 Aligned_cols=64 Identities=14% Similarity=0.221 Sum_probs=37.3
Q ss_pred HHHHHHHHhcCCCCEEEEe--c-----CCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCC
Q 025860 75 HRRRVQVLVESAPDLIAFE--T-----IPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKR 147 (247)
Q Consensus 75 ~~~q~~~l~~~gvD~i~~E--T-----~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~ 147 (247)
+.+.++.+.++|+|+|.+= | .+.-.+-..+.+..++. ++||++. +..+.+++.+.++ .+
T Consensus 144 ~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~--~IPVI~G----------~V~t~e~A~~~~~--aG 209 (369)
T TIGR01304 144 AREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL--DVPVIAG----------GVNDYTTALHLMR--TG 209 (369)
T ss_pred HHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC--CCCEEEe----------CCCCHHHHHHHHH--cC
Confidence 4557788889999999863 1 11111233344445544 5888741 2345566666554 47
Q ss_pred CeEEE
Q 025860 148 VVSVG 152 (247)
Q Consensus 148 ~~avG 152 (247)
+++|-
T Consensus 210 aDgV~ 214 (369)
T TIGR01304 210 AAGVI 214 (369)
T ss_pred CCEEE
Confidence 88764
No 483
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=45.66 E-value=2.4e+02 Score=25.82 Aligned_cols=115 Identities=22% Similarity=0.264 Sum_probs=67.3
Q ss_pred CCCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCC--CCEEEEecCCCHHHHHHHHHHHHhhC
Q 025860 35 KHRPILVAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESA--PDLIAFETIPNKIEAQAYAELLEEEN 112 (247)
Q Consensus 35 ~~~~~~VaGsiGP~g~~l~~g~eY~g~y~~~~s~~e~~~~~~~q~~~l~~~g--vD~i~~ET~~~~~E~~aa~~~~~~~~ 112 (247)
.++++||.+++++-| .+.+| .+.+++.. +++.| +=+|-+...+-......+.+.+ ...
T Consensus 188 ~~~p~~is~t~~d~g-~l~~G----------~t~e~~~~--------~~~~~~~~~~IGvNC~~~~~~~~~~~~L~-~~~ 247 (317)
T KOG1579|consen 188 PSKPFWISFTIKDEG-RLRSG----------ETGEEAAQ--------LLKDGINLLGIGVNCVSPNFVEPLLKELM-AKL 247 (317)
T ss_pred CCCcEEEEEEecCCC-cccCC----------CcHHHHHH--------HhccCCceEEEEeccCCchhccHHHHHHh-hcc
Confidence 457999999999944 44432 25566554 33445 4444555555555556666655 323
Q ss_pred CCCcEEEEEEEc---CC--C-cccC--C-CcHHHHHHHHHhCCCCeEEEEcCC-ChhHHHHHHHHHHh
Q 025860 113 IKIPAWFSFNSK---DG--V-NVVS--G-DSLLECASIAESCKRVVSVGINCT-PPRFISGLILIIKK 170 (247)
Q Consensus 113 ~~~pv~is~~~~---~~--~-~l~~--G-~~~~~~~~~~~~~~~~~avG~NC~-~p~~~~~~l~~l~~ 170 (247)
.+.|+++-=..- ++ + -+.. | +++...+++..+ .++..||--|. .|.++..+-+.++.
T Consensus 248 ~~~~llvYPNsGe~yd~~~g~~~~~~~~~~~~~~~~~~~~~-lGv~iIGGCCrt~P~~I~aI~e~v~~ 314 (317)
T KOG1579|consen 248 TKIPLLVYPNSGEVYDNEKGGWIPTPFGLEPWQTYVKKAID-LGVRIIGGCCRTTPKHIRAIAEAVKK 314 (317)
T ss_pred CCCeEEEecCCCCCCccccCcccCCCcccchHHHHHHHHHh-cccceeCcccCCChHHHHHHHHHhhc
Confidence 356766532211 11 1 1111 2 334556666666 58999999995 89998877776654
No 484
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=45.32 E-value=63 Score=28.68 Aligned_cols=62 Identities=15% Similarity=0.328 Sum_probs=35.3
Q ss_pred CCcEEEEEEEcCCCcccCCCcHHHHHHHHHh-CCCCeEEEEcCCC------------hhHHHHHHHHHHhhcCCCEEEEe
Q 025860 114 KIPAWFSFNSKDGVNVVSGDSLLECASIAES-CKRVVSVGINCTP------------PRFISGLILIIKKVTAKPILIYP 180 (247)
Q Consensus 114 ~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~-~~~~~avG~NC~~------------p~~~~~~l~~l~~~~~~pl~vyP 180 (247)
++|+++|+.... .+..++.++.++. ..+++++=+|=+. ++....+++..+...++|+++.-
T Consensus 96 ~~pvi~Si~~~~------~~~~~d~~~~a~~~~~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKL 169 (295)
T PF01180_consen 96 DIPVIASINGDS------EEEIEDWAELAKRLEAGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREAVDIPVFVKL 169 (295)
T ss_dssp CEEEEEEE-TSS------SGHHHHHHHHHHHHHHHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHHHSSEEEEEE
T ss_pred ceeEEEEeecCC------chhHHHHHHHHHHhcCcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhccCCCEEEEe
Confidence 578998885432 2225555544322 1367888777332 23455566666777789988654
Q ss_pred C
Q 025860 181 N 181 (247)
Q Consensus 181 N 181 (247)
-
T Consensus 170 ~ 170 (295)
T PF01180_consen 170 S 170 (295)
T ss_dssp -
T ss_pred c
Confidence 3
No 485
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=45.12 E-value=52 Score=31.18 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=28.3
Q ss_pred CCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEE
Q 025860 36 HRPILVAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIA 91 (247)
Q Consensus 36 ~~~~~VaGsiGP~g~~l~~g~eY~g~y~~~~s~~e~~~~~~~q~~~l~~~gvD~i~ 91 (247)
++++.|.|+|+-.| ++..++|++..+.+.+.++|.++
T Consensus 353 ~r~i~VlG~m~elG-------------------~~~~~~h~~~~~~~~~~~~d~v~ 389 (453)
T PRK10773 353 GYRVMVVGDMAELG-------------------AESEACHRQVGEAAKAAGIDKVL 389 (453)
T ss_pred CCEEEEECChhhcc-------------------hHHHHHHHHHHHHHHHcCCCEEE
Confidence 35688888877765 33467899999989888899876
No 486
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=44.89 E-value=2.6e+02 Score=25.91 Aligned_cols=87 Identities=15% Similarity=0.112 Sum_probs=43.2
Q ss_pred HHHHHHHHhcCCCCEEEEecCC-CHHH----HHHHHHHHHhhCCCCcEEEEEEEc-------CCCcccC-CCcHHHHHHH
Q 025860 75 HRRRVQVLVESAPDLIAFETIP-NKIE----AQAYAELLEEENIKIPAWFSFNSK-------DGVNVVS-GDSLLECASI 141 (247)
Q Consensus 75 ~~~q~~~l~~~gvD~i~~ET~~-~~~E----~~aa~~~~~~~~~~~pv~is~~~~-------~~~~l~~-G~~~~~~~~~ 141 (247)
+.++++.++++|+++|.+=--. +-.+ ++.+.+..++. +.++++.=.++ ++-++.. ..++.++ +.
T Consensus 159 ll~~l~~al~~Gv~~VQLR~K~~~~~~~~~~a~~L~~l~~~~--~~~lIIND~vdlAl~~~aDGVHLgq~dl~~~~a-R~ 235 (347)
T PRK02615 159 LLEVVEAALKGGVTLVQYRDKTADDRQRLEEAKKLKELCHRY--GALFIVNDRVDIALAVDADGVHLGQEDLPLAVA-RQ 235 (347)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHh--CCeEEEeChHHHHHHcCCCEEEeChhhcCHHHH-HH
Confidence 4457888888999998765221 2222 23333444444 46766553321 1112210 1122222 22
Q ss_pred HHhCCCCeEEEEcCCChhHHHHHHH
Q 025860 142 AESCKRVVSVGINCTPPRFISGLIL 166 (247)
Q Consensus 142 ~~~~~~~~avG~NC~~p~~~~~~l~ 166 (247)
+.. .. ..||+.|..++.+..+.+
T Consensus 236 llg-~~-~iIG~S~Hs~~e~~~A~~ 258 (347)
T PRK02615 236 LLG-PE-KIIGRSTTNPEEMAKAIA 258 (347)
T ss_pred hcC-CC-CEEEEecCCHHHHHHHHH
Confidence 211 12 468999988776655544
No 487
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=44.80 E-value=2.5e+02 Score=25.69 Aligned_cols=135 Identities=14% Similarity=0.101 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCEEEEecCC---------------C---HHHHHHHHHHHHhhCCCCcEEEEEEEcCC----
Q 025860 69 ETLKDFHRRRVQVLVESAPDLIAFETIP---------------N---KIEAQAYAELLEEENIKIPAWFSFNSKDG---- 126 (247)
Q Consensus 69 ~e~~~~~~~q~~~l~~~gvD~i~~ET~~---------------~---~~E~~aa~~~~~~~~~~~pv~is~~~~~~---- 126 (247)
++..++|+++++ .|+-+|+.|... + +...+.+.+++++. +.++++++.-...
T Consensus 33 ~~~~~~y~~rA~----gG~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~l~~~vh~~--g~~~~~QL~h~G~~~~~ 106 (353)
T cd02930 33 DRLAAFYAERAR----GGVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRLITDAVHAE--GGKIALQILHAGRYAYH 106 (353)
T ss_pred HHHHHHHHHHhc----CCceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHHHHHHHHHHc--CCEEEeeccCCCCCCCC
Confidence 788888888765 688888888321 1 34455556666665 4577777642110
Q ss_pred --------------CcccCCCcH---H-------HHHHHHHhCCCCeEEEEcCCC-------------------------
Q 025860 127 --------------VNVVSGDSL---L-------ECASIAESCKRVVSVGINCTP------------------------- 157 (247)
Q Consensus 127 --------------~~l~~G~~~---~-------~~~~~~~~~~~~~avG~NC~~------------------------- 157 (247)
......-+. . ++++.+.+ .|.|+|-|.+.+
T Consensus 107 ~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~a~~-aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslen 185 (353)
T cd02930 107 PLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALARE-AGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFEN 185 (353)
T ss_pred CCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHH
Confidence 001111222 2 23333334 589999887631
Q ss_pred -hhHHHHHHHHHHhhc--CCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEE
Q 025860 158 -PRFISGLILIIKKVT--AKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLV 219 (247)
Q Consensus 158 -p~~~~~~l~~l~~~~--~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iI 219 (247)
+..+.++++.+++.. +.+|++.-|.-... ..+ .++++..+.++.+-+.|+.+|
T Consensus 186 R~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~----~~g-----~~~~e~~~i~~~Le~~G~d~i 241 (353)
T cd02930 186 RMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLV----EGG-----STWEEVVALAKALEAAGADIL 241 (353)
T ss_pred HhHHHHHHHHHHHHHcCCCceEEEEecccccC----CCC-----CCHHHHHHHHHHHHHcCCCEE
Confidence 244566777777765 45677777652110 001 235556666666666665554
No 488
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=44.43 E-value=1.5e+02 Score=26.67 Aligned_cols=26 Identities=12% Similarity=-0.009 Sum_probs=13.8
Q ss_pred CCCEEEEecCC-----CHHHHHHHHHHHHhh
Q 025860 86 APDLIAFETIP-----NKIEAQAYAELLEEE 111 (247)
Q Consensus 86 gvD~i~~ET~~-----~~~E~~aa~~~~~~~ 111 (247)
++|.|.+.+++ +..+++.+.++++..
T Consensus 211 ~~d~I~lDn~~~~~G~~~~~~~~~~~~l~~~ 241 (302)
T cd01571 211 KLDGVRLDTPSSRRGVFRYLIREVRWALDIR 241 (302)
T ss_pred CCcEEEECCCCCCCCCHHHHHHHHHHHHHhC
Confidence 35666666654 344445555555543
No 489
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=44.34 E-value=97 Score=23.65 Aligned_cols=39 Identities=13% Similarity=0.220 Sum_probs=28.3
Q ss_pred CCcHHHHHHHHHhCCCCeEEEEcCCC---hhHHHHHHHHHHhh
Q 025860 132 GDSLLECASIAESCKRVVSVGINCTP---PRFISGLILIIKKV 171 (247)
Q Consensus 132 G~~~~~~~~~~~~~~~~~avG~NC~~---p~~~~~~l~~l~~~ 171 (247)
-.+++++++.+.+ .+++.|++.|+. .+.+.++++.+++.
T Consensus 36 ~vp~e~~~~~a~~-~~~d~V~iS~~~~~~~~~~~~~~~~L~~~ 77 (122)
T cd02071 36 RQTPEEIVEAAIQ-EDVDVIGLSSLSGGHMTLFPEVIELLREL 77 (122)
T ss_pred CCCHHHHHHHHHH-cCCCEEEEcccchhhHHHHHHHHHHHHhc
Confidence 4678888888877 589999998874 34556666666654
No 490
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=44.11 E-value=1.5e+02 Score=27.59 Aligned_cols=67 Identities=16% Similarity=0.108 Sum_probs=40.5
Q ss_pred HHHHHHHhc--CCCCEEEEecCCCHH-HHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeE--
Q 025860 76 RRRVQVLVE--SAPDLIAFETIPNKI-EAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVS-- 150 (247)
Q Consensus 76 ~~q~~~l~~--~gvD~i~~ET~~~~~-E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~a-- 150 (247)
.++++.|++ +|+|+|.+-+-.--. -....++.+|+..++++++. +...++ +.++.|.+ .|+|+
T Consensus 110 ~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIa-------GNV~T~----e~a~~Li~-aGAD~vK 177 (346)
T PRK05096 110 FEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICA-------GNVVTG----EMVEELIL-SGADIVK 177 (346)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEE-------ecccCH----HHHHHHHH-cCCCEEE
Confidence 357778887 599999999755433 34445677777655677663 222233 34444544 47776
Q ss_pred EEEc
Q 025860 151 VGIN 154 (247)
Q Consensus 151 vG~N 154 (247)
||+-
T Consensus 178 VGIG 181 (346)
T PRK05096 178 VGIG 181 (346)
T ss_pred Eccc
Confidence 4554
No 491
>PRK04326 methionine synthase; Provisional
Probab=43.93 E-value=2.4e+02 Score=25.31 Aligned_cols=134 Identities=16% Similarity=0.110 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCEEEE-ecC--CCHHHHHHHHHHHHhhC--CCCcEEEEEEEcCCCcccCCCcHHHHHHHHH
Q 025860 69 ETLKDFHRRRVQVLVESAPDLIAF-ETI--PNKIEAQAYAELLEEEN--IKIPAWFSFNSKDGVNVVSGDSLLECASIAE 143 (247)
Q Consensus 69 ~e~~~~~~~q~~~l~~~gvD~i~~-ET~--~~~~E~~aa~~~~~~~~--~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~ 143 (247)
.++.+.++++++.|.+.|++.|.+ |.. .+..+.+.+.+++++.- .+.++++..++ |. .......+.
T Consensus 157 ~~l~~~~~~~i~~l~~~G~~~iqidEP~l~~~~~~~~~~~~~l~~~~~~~~~~v~lH~C~--------G~-~~~~~~~l~ 227 (330)
T PRK04326 157 FDLAKVINEEIKNLVEAGAKYIQIDEPALATHPEDVEIAVEALNRIVKGINAKLGLHVCY--------GD-YSRIAPYIL 227 (330)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEecCchhhcCHHHHHHHHHHHHHHHhCCCCEEEEEEeC--------CC-cHHHHHHHH
Confidence 567789999999999999996654 431 23456666666666532 23344444432 22 244566666
Q ss_pred hCCCCeEEEEcCCChhHHHHHHHHHHhh-cCCC--EEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCe---
Q 025860 144 SCKRVVSVGINCTPPRFISGLILIIKKV-TAKP--ILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGAS--- 217 (247)
Q Consensus 144 ~~~~~~avG~NC~~p~~~~~~l~~l~~~-~~~p--l~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~--- 217 (247)
+ .+++++++--.... ..-|+.+.+. .+.. +++.+- . ..|. .++++..+.+++.++ ++.
T Consensus 228 ~-~~vd~i~~d~~~~~--~~~l~~~~~~~~~~~l~~Gvv~~-------~-~~~~----~~~e~v~~~v~~~~~-~~~~~~ 291 (330)
T PRK04326 228 E-FPVDQFDLEFANGN--YKLLDLLKEYGFDKELGLGVIDV-------H-SARV----ESVEEIKEAIKKGLE-YVPPEK 291 (330)
T ss_pred h-CCCCEEEEEeCCCC--chhHHHhhccCCCCeEEeEEEeC-------C-CCCC----CCHHHHHHHHHHHHH-hCChhh
Confidence 5 58899888775321 1133333322 1222 233331 1 1233 358888888888877 443
Q ss_pred -EEeecCCCCh
Q 025860 218 -LVGGCCRTTP 227 (247)
Q Consensus 218 -iIGGCCGt~P 227 (247)
++.=-||..+
T Consensus 292 ~~lsp~Cgl~~ 302 (330)
T PRK04326 292 LYINPDCGLKL 302 (330)
T ss_pred EEECCCCCCCc
Confidence 7777788653
No 492
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=43.89 E-value=3e+02 Score=26.43 Aligned_cols=87 Identities=10% Similarity=0.098 Sum_probs=55.8
Q ss_pred HHHHHhcCCCCEEEEecCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCC-
Q 025860 78 RVQVLVESAPDLIAFETIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT- 156 (247)
Q Consensus 78 q~~~l~~~gvD~i~~ET~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~- 156 (247)
.++.+++.|+|++=+|-...-..++.+ .+...+..+++|+.-. +.+.+.+.++.+.. .++|.+=+-+.
T Consensus 71 ~l~~~~~~~~d~vDiEl~~~~~~~~~l----~~~~~~~kvI~S~Hdf------~~~~l~~~~~~~~~-~gaDi~Kia~~a 139 (477)
T PRK09310 71 KMQSLAKLNPNYLDIDKDFPKEALIRI----RKLHPKIKIILSYHTS------EHEDIIQLYNEMLA-SAADYYKIAVSS 139 (477)
T ss_pred HHHHHHHhCCCEEEEEecCCHHHHHHH----HHhCCCCEEEEEcCCC------CcchHHHHHHHHHH-cCCCEEEEeeCC
Confidence 445556678999999965544333332 2222267899999732 22556677777776 57888888885
Q ss_pred -ChhHHHHHHHHHHhhcCCCE
Q 025860 157 -PPRFISGLILIIKKVTAKPI 176 (247)
Q Consensus 157 -~p~~~~~~l~~l~~~~~~pl 176 (247)
++++.+.+++..+. ...|+
T Consensus 140 ~~~~D~l~ll~~~~~-~~~p~ 159 (477)
T PRK09310 140 SSSTDLLNIIHQKRS-LPENT 159 (477)
T ss_pred CCHHHHHHHHHHHhh-CCCCE
Confidence 57777888776544 34564
No 493
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=43.79 E-value=52 Score=28.85 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcCCCCEEEEecCCCH--HHHHHHHHHHHhhCCCCcEEEEE
Q 025860 74 FHRRRVQVLVESAPDLIAFETIPNK--IEAQAYAELLEEENIKIPAWFSF 121 (247)
Q Consensus 74 ~~~~q~~~l~~~gvD~i~~ET~~~~--~E~~aa~~~~~~~~~~~pv~is~ 121 (247)
...++++.+.++|.|.|++---... +.+...++.+|+.. ++|+|+--
T Consensus 29 ~~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~-~lPvilfP 77 (240)
T COG1646 29 EADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAIKERT-DLPVILFP 77 (240)
T ss_pred ccHHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHHHhhc-CCCEEEec
Confidence 3445888899999999999743333 45788888888643 79998543
No 494
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=43.48 E-value=1.1e+02 Score=26.95 Aligned_cols=121 Identities=11% Similarity=0.038 Sum_probs=65.3
Q ss_pred CCCCEEEEe----cCCCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHHhCCCCeEEEEcCCC---
Q 025860 85 SAPDLIAFE----TIPNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTP--- 157 (247)
Q Consensus 85 ~gvD~i~~E----T~~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~avG~NC~~--- 157 (247)
.-+|++=|= ++..-+.++.-++.+++.+ ++++.-=|+.+--.. -..+.+.++.+++ .|.++|=|+=..
T Consensus 36 ~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~g--V~v~~GGtl~E~a~~--q~~~~~yl~~~k~-lGf~~IEiSdGti~l 110 (244)
T PF02679_consen 36 DYIDFLKFGWGTSALYPEEILKEKIDLAHSHG--VYVYPGGTLFEVAYQ--QGKFDEYLEECKE-LGFDAIEISDGTIDL 110 (244)
T ss_dssp GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT---EEEE-HHHHHHHHH--TT-HHHHHHHHHH-CT-SEEEE--SSS--
T ss_pred hhccEEEecCceeeecCHHHHHHHHHHHHHcC--CeEeCCcHHHHHHHh--cChHHHHHHHHHH-cCCCEEEecCCceeC
Confidence 458998766 4444455888888888873 555422111110111 2245566666666 688888887742
Q ss_pred -hhHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEE
Q 025860 158 -PRFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLV 219 (247)
Q Consensus 158 -p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iI 219 (247)
.+.-..+++.+ .+.-+-|.|=-|.. ........+++.|.+.+++++++||..|
T Consensus 111 ~~~~r~~~I~~~---~~~Gf~v~~EvG~K------~~~~~~~~~~~~~i~~~~~dLeAGA~~V 164 (244)
T PF02679_consen 111 PEEERLRLIRKA---KEEGFKVLSEVGKK------DPESDFSLDPEELIEQAKRDLEAGADKV 164 (244)
T ss_dssp -HHHHHHHHHHH---CCTTSEEEEEES-S------SHHHHTT--CCHHHHHHHHHHHHTECEE
T ss_pred CHHHHHHHHHHH---HHCCCEEeecccCC------CchhcccCCHHHHHHHHHHHHHCCCCEE
Confidence 33444554444 34445567766631 1111222458899999999999998876
No 495
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=43.46 E-value=69 Score=27.67 Aligned_cols=59 Identities=17% Similarity=0.220 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeEEeecCCCChHHHH
Q 025860 159 RFISGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASLVGGCCRTTPNTIK 231 (247)
Q Consensus 159 ~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iIGGCCGt~P~hI~ 231 (247)
+.+.+.++++++..+. ++|++.-|..|.. .+ .++..+.++.++++||.+|=| ..|+.++
T Consensus 171 ~~i~~~i~~~r~~~D~-vIv~~HwG~e~~~-----~p-----~~~q~~~a~~lidaGaDiIiG---~HpHv~q 229 (250)
T PF09587_consen 171 ERIKEDIREARKKADV-VIVSLHWGIEYEN-----YP-----TPEQRELARALIDAGADIIIG---HHPHVIQ 229 (250)
T ss_pred HHHHHHHHHHhcCCCE-EEEEeccCCCCCC-----CC-----CHHHHHHHHHHHHcCCCEEEe---CCCCccc
Confidence 5566666666643333 8999999864322 11 234567888899999998743 4454443
No 496
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=43.29 E-value=1.6e+02 Score=30.27 Aligned_cols=87 Identities=10% Similarity=0.058 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCEE-----EEecCCCHHHHHHHHHHHHhhCC---CCcEEEEEEEcCCCcccCCCcHHHHH
Q 025860 68 VETLKDFHRRRVQVLVESAPDLI-----AFETIPNKIEAQAYAELLEEENI---KIPAWFSFNSKDGVNVVSGDSLLECA 139 (247)
Q Consensus 68 ~~e~~~~~~~q~~~l~~~gvD~i-----~~ET~~~~~E~~aa~~~~~~~~~---~~pv~is~~~~~~~~l~~G~~~~~~~ 139 (247)
.+++...|.+.++.|.++||+.| .+=+..+..+...+.++.+.... +.++.++..|.+.+ ++.
T Consensus 179 l~dl~~~y~~~l~~L~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~y~~l~~~~~~~~i~l~tyfg~~~---------~~~ 249 (758)
T PRK05222 179 LDDLLPVYAELLAELAAAGAEWVQIDEPALVLDLPQEWLEAFKRAYEALAAAKPRPKLLLATYFGSLN---------DAL 249 (758)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEeeCchhhcCCCHHHHHHHHHHHHHHhcCCCCCCEEEEeeccchh---------hHH
Q ss_pred HHHHhCCCCeEEEEcCC-ChhHHHHH
Q 025860 140 SIAESCKRVVSVGINCT-PPRFISGL 164 (247)
Q Consensus 140 ~~~~~~~~~~avG~NC~-~p~~~~~~ 164 (247)
..+.+ ..++++++-+. ++..+..+
T Consensus 250 ~~l~~-l~Vd~l~LD~~~~~~~l~~l 274 (758)
T PRK05222 250 DLLAS-LPVDGLHLDLVRGPEQLAAL 274 (758)
T ss_pred HHHHc-CCCCEEEEEeeCCccchHHH
No 497
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=43.13 E-value=2.5e+02 Score=25.32 Aligned_cols=140 Identities=14% Similarity=0.119 Sum_probs=66.4
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEec--CC--CHHHHHHHHHHHHhhCCCCcEEEEEEEcCC--CcccCCCcHHHHH
Q 025860 66 ITVETLKDFHRRRVQVLVESAPDLIAFET--IP--NKIEAQAYAELLEEENIKIPAWFSFNSKDG--VNVVSGDSLLECA 139 (247)
Q Consensus 66 ~s~~e~~~~~~~q~~~l~~~gvD~i~~ET--~~--~~~E~~aa~~~~~~~~~~~pv~is~~~~~~--~~l~~G~~~~~~~ 139 (247)
.+.+++.+ .++.+.+.|++-|.|-. .| ..+-+..+++.+++..+++.+.. ++-.+- .....|.+..+.+
T Consensus 72 ls~eei~~----~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~~~~-~s~~ei~~~~~~~g~~~~e~l 146 (340)
T TIGR03699 72 LSVEEILQ----KIEELVAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIHIHS-FSPVEIVYIAKKEGLSLREVL 146 (340)
T ss_pred CCHHHHHH----HHHHHHHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcCCCC-CCHHHHHHHhccCCCCHHHHH
Confidence 57777777 34444557887777731 22 22234456666665432344332 221100 0112465556777
Q ss_pred HHHHhCCCCeEEEEcCCChhHH-HHHHHHHHhhcCCCEEEEeCCCCcccccccccccCCCCChHHHHHHHHHHHHcCCeE
Q 025860 140 SIAESCKRVVSVGINCTPPRFI-SGLILIIKKVTAKPILIYPNSGEFYDADRKEWVQNTGVSDEDFVSYVSKWCEVGASL 218 (247)
Q Consensus 140 ~~~~~~~~~~avG~NC~~p~~~-~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~i 218 (247)
+.+++ .|++.+ ++.+++.. ....+.+ +| ...+.++|.+.++.+.+.|..+
T Consensus 147 ~~Lk~-aG~~~~--~~~g~E~~~~~~~~~~----------~~----------------~~~s~~~~l~~i~~a~~~Gi~v 197 (340)
T TIGR03699 147 ERLKE-AGLDSI--PGGGAEILSDRVRKII----------SP----------------KKISSEEWLEVMETAHKLGLPT 197 (340)
T ss_pred HHHHH-cCCCcC--CCCcccccCHHHHHhh----------CC----------------CCCCHHHHHHHHHHHHHcCCCc
Confidence 77766 455543 22222211 1111111 00 0124566777777777777443
Q ss_pred E-eec--CCCChHHHHHHHHHhhC
Q 025860 219 V-GGC--CRTTPNTIKGIYRTLSN 239 (247)
Q Consensus 219 I-GGC--CGt~P~hI~al~~~l~~ 239 (247)
- |+- =|-+++++..+...++.
T Consensus 198 ~~~~iiGlgEt~ed~~~~l~~l~~ 221 (340)
T TIGR03699 198 TATMMFGHVETLEDRIEHLERIRE 221 (340)
T ss_pred cceeEeeCCCCHHHHHHHHHHHHH
Confidence 1 111 15677777766666543
No 498
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=42.96 E-value=1.8e+02 Score=26.10 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=39.9
Q ss_pred CCcHHHHHHHHHhCCCCeEEEEcCC--C------hhHHHHHHHHHHhhcCCCEEEEeCCCCc
Q 025860 132 GDSLLECASIAESCKRVVSVGINCT--P------PRFISGLILIIKKVTAKPILIYPNSGEF 185 (247)
Q Consensus 132 G~~~~~~~~~~~~~~~~~avG~NC~--~------p~~~~~~l~~l~~~~~~pl~vyPNaG~~ 185 (247)
=++++++.+++.. .++|++=+..+ + |+.=..+|+.+++..+.||+..--+|.+
T Consensus 154 ~T~peeA~~Fv~~-TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~ 214 (284)
T PRK12737 154 YTNPDAAAEFVER-TGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVSIPLVLHGASGVP 214 (284)
T ss_pred CCCHHHHHHHHHH-hCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCC
Confidence 3588999998877 58887666652 2 4445678889988889999888877754
No 499
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=42.92 E-value=84 Score=31.29 Aligned_cols=65 Identities=11% Similarity=0.096 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhcCCCCEEEEe-cC--CCHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCcccCCCcHHHHHHHHH
Q 025860 72 KDFHRRRVQVLVESAPDLIAFE-TI--PNKIEAQAYAELLEEENIKIPAWFSFNSKDGVNVVSGDSLLECASIAE 143 (247)
Q Consensus 72 ~~~~~~q~~~l~~~gvD~i~~E-T~--~~~~E~~aa~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~ 143 (247)
.++|.+.++.+.+.|+|.|.|= |. ..+.++..+++.+++.. ++| +.|.+.++ .|..++..+..+.
T Consensus 154 ~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~-~~p--i~~H~Hnt----~GlA~An~laAie 221 (593)
T PRK14040 154 LQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRV-DVP--LHLHCHAT----TGLSTATLLKAIE 221 (593)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhc-CCe--EEEEECCC----CchHHHHHHHHHH
Confidence 4677778888889999999775 43 35668888888888753 455 45666554 5767777766664
No 500
>PRK11579 putative oxidoreductase; Provisional
Probab=42.89 E-value=81 Score=28.58 Aligned_cols=47 Identities=13% Similarity=0.072 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCCCCEEEEe--cCCCHHHHHHHHHHHHhhCCCCcEEEEEE
Q 025860 73 DFHRRRVQVLVESAPDLIAFE--TIPNKIEAQAYAELLEEENIKIPAWFSFN 122 (247)
Q Consensus 73 ~~~~~q~~~l~~~gvD~i~~E--T~~~~~E~~aa~~~~~~~~~~~pv~is~~ 122 (247)
..|.+++..++++|..+| +| --.+++|++.+++++++. ++++.+.|.
T Consensus 75 ~~H~~~~~~al~aGkhVl-~EKPla~t~~ea~~l~~~a~~~--g~~l~v~~~ 123 (346)
T PRK11579 75 DTHFPLAKAALEAGKHVV-VDKPFTVTLSQARELDALAKSA--GRVLSVFHN 123 (346)
T ss_pred HHHHHHHHHHHHCCCeEE-EeCCCCCCHHHHHHHHHHHHHh--CCEEEEEee
Confidence 457777777777777655 36 234677777777777765 355555554
Done!