Query 025861
Match_columns 247
No_of_seqs 231 out of 1973
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 10:21:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025861.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025861hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2217 ZntA Cation transport 100.0 3E-41 6.4E-46 324.1 14.5 231 2-242 156-396 (713)
2 KOG0207 Cation transport ATPas 100.0 1.8E-38 4E-43 302.5 13.1 240 1-244 315-575 (951)
3 PRK11033 zntA zinc/cadmium/mer 100.0 1.3E-37 2.8E-42 303.9 17.9 213 23-241 205-426 (741)
4 TIGR01647 ATPase-IIIA_H plasma 100.0 1.9E-37 4.1E-42 303.4 19.0 225 3-240 42-275 (755)
5 PRK10671 copA copper exporting 100.0 1.9E-37 4.2E-42 306.9 18.3 236 1-241 258-507 (834)
6 TIGR01511 ATPase-IB1_Cu copper 100.0 1.8E-37 3.9E-42 295.1 16.3 232 2-240 27-266 (562)
7 TIGR01512 ATPase-IB2_Cd heavy 100.0 6E-37 1.3E-41 290.2 18.4 220 4-238 6-233 (536)
8 TIGR01522 ATPase-IIA2_Ca golgi 100.0 2.8E-36 6E-41 299.8 19.7 215 3-230 67-302 (884)
9 TIGR01517 ATPase-IIB_Ca plasma 100.0 1.4E-35 3.1E-40 296.4 19.7 227 3-230 102-354 (941)
10 PRK10517 magnesium-transportin 100.0 1.8E-35 3.8E-40 293.5 19.5 211 4-227 110-346 (902)
11 PRK01122 potassium-transportin 100.0 2.6E-35 5.6E-40 282.8 19.1 218 3-226 39-272 (679)
12 TIGR01524 ATPase-IIIB_Mg magne 100.0 2.4E-35 5.1E-40 292.2 19.0 212 3-228 75-312 (867)
13 TIGR01525 ATPase-IB_hvy heavy 100.0 3.5E-35 7.5E-40 279.4 18.8 203 23-233 17-227 (556)
14 TIGR01497 kdpB K+-transporting 100.0 1.5E-34 3.3E-39 277.0 22.3 220 3-224 38-271 (675)
15 PRK15122 magnesium-transportin 100.0 2.8E-34 6.1E-39 285.2 20.7 220 3-228 87-345 (903)
16 KOG0204 Calcium transporting A 100.0 1.8E-35 4E-40 279.5 11.3 168 3-170 161-329 (1034)
17 TIGR01116 ATPase-IIA1_Ca sarco 100.0 1.9E-34 4.2E-39 287.5 18.5 223 3-227 13-264 (917)
18 PRK14010 potassium-transportin 100.0 3.1E-34 6.8E-39 275.0 17.5 167 3-171 38-215 (673)
19 TIGR01523 ATPase-IID_K-Na pota 100.0 5.6E-34 1.2E-38 286.3 16.9 152 3-163 68-233 (1053)
20 TIGR01106 ATPase-IIC_X-K sodiu 100.0 4.8E-33 1E-37 279.3 22.9 221 3-228 78-320 (997)
21 PF00122 E1-E2_ATPase: E1-E2 A 100.0 4.9E-34 1.1E-38 242.7 12.9 197 30-229 2-211 (230)
22 KOG0202 Ca2+ transporting ATPa 100.0 4E-33 8.6E-38 263.8 7.7 215 3-228 65-304 (972)
23 COG0474 MgtA Cation transport 100.0 5.2E-31 1.1E-35 262.2 16.5 162 3-169 86-260 (917)
24 TIGR01657 P-ATPase-V P-type AT 100.0 3.1E-30 6.8E-35 260.4 20.6 201 23-229 192-425 (1054)
25 KOG0205 Plasma membrane H+-tra 100.0 2.6E-31 5.7E-36 245.5 9.8 155 17-174 90-244 (942)
26 TIGR01494 ATPase_P-type ATPase 100.0 2.9E-30 6.3E-35 242.9 14.6 194 32-231 4-209 (499)
27 KOG0208 Cation transport ATPas 99.9 8.4E-26 1.8E-30 216.8 20.1 193 22-218 212-435 (1140)
28 KOG0203 Na+/K+ ATPase, alpha s 99.9 9.2E-25 2E-29 207.1 4.2 220 3-230 100-340 (1019)
29 COG2216 KdpB High-affinity K+ 99.9 2.7E-23 5.9E-28 188.8 12.9 147 23-171 63-215 (681)
30 TIGR01652 ATPase-Plipid phosph 99.9 6.6E-22 1.4E-26 200.4 18.1 120 37-160 64-236 (1057)
31 KOG0209 P-type ATPase [Inorgan 99.9 2.6E-21 5.6E-26 183.3 10.8 210 22-237 215-464 (1160)
32 PLN03190 aminophospholipid tra 99.8 5.7E-20 1.2E-24 186.5 18.9 124 31-155 140-313 (1178)
33 KOG0210 P-type ATPase [Inorgan 99.5 3.6E-13 7.7E-18 126.7 16.9 196 19-220 126-372 (1051)
34 KOG0206 P-type ATPase [General 99.3 9.8E-12 2.1E-16 124.6 11.9 217 31-247 84-375 (1151)
35 COG0474 MgtA Cation transport 92.6 1 2.2E-05 46.2 10.4 187 30-220 112-317 (917)
36 KOG4383 Uncharacterized conser 91.9 0.59 1.3E-05 45.7 7.3 83 22-104 86-198 (1354)
37 KOG0204 Calcium transporting A 85.6 0.15 3.2E-06 50.8 -1.6 76 153-228 926-1011(1034)
38 PF01455 HupF_HypC: HupF/HypC 75.4 10 0.00022 25.9 5.2 33 62-94 17-52 (68)
39 PRK11507 ribosome-associated p 68.7 7 0.00015 27.0 3.1 27 64-90 37-63 (70)
40 PF10749 DUF2534: Protein of u 66.3 11 0.00024 26.7 3.7 20 207-227 60-79 (85)
41 PF13275 S4_2: S4 domain; PDB: 64.6 4.6 9.9E-05 27.4 1.6 28 65-93 34-61 (65)
42 smart00306 HintN Hint (Hedgeho 62.1 11 0.00024 26.7 3.4 27 63-89 73-99 (100)
43 COG0272 Lig NAD-dependent DNA 60.3 13 0.00027 36.7 4.3 76 76-162 364-441 (667)
44 PF03120 DNA_ligase_OB: NAD-de 59.9 5.2 0.00011 28.5 1.3 22 75-96 45-67 (82)
45 TIGR01523 ATPase-IID_K-Na pota 59.5 1.4E+02 0.003 31.4 12.0 81 29-110 89-178 (1053)
46 PF03453 MoeA_N: MoeA N-termin 57.6 17 0.00036 29.1 4.0 61 77-141 81-143 (162)
47 PF15584 Imm44: Immunity prote 57.6 4.5 9.7E-05 29.3 0.6 19 82-100 13-31 (94)
48 cd00210 PTS_IIA_glc PTS_IIA, P 49.9 31 0.00067 26.5 4.2 30 106-136 70-99 (124)
49 COG1188 Ribosome-associated he 48.5 23 0.00051 26.1 3.1 29 65-94 35-63 (100)
50 COG3924 Predicted membrane pro 47.1 82 0.0018 21.8 5.4 42 2-43 17-64 (80)
51 TIGR00074 hypC_hupF hydrogenas 46.7 40 0.00087 23.6 4.0 31 63-93 16-49 (76)
52 TIGR00830 PTBA PTS system, glu 46.0 37 0.00081 25.9 4.1 30 106-136 70-99 (121)
53 PF02699 YajC: Preprotein tran 46.0 51 0.0011 23.2 4.6 8 81-88 38-45 (82)
54 PRK04980 hypothetical protein; 43.9 39 0.00084 25.1 3.7 57 63-124 20-83 (102)
55 PRK11479 hypothetical protein; 43.7 5.6 0.00012 34.9 -0.9 21 73-93 58-78 (274)
56 cd00081 Hint Hedgehog/Intein d 42.7 36 0.00079 25.5 3.7 29 61-89 71-99 (136)
57 PRK14010 potassium-transportin 41.7 94 0.002 31.0 7.1 64 68-137 124-187 (673)
58 cd00433 Peptidase_M17 Cytosol 41.3 54 0.0012 31.1 5.2 61 57-117 279-354 (468)
59 PRK14715 DNA polymerase II lar 40.7 22 0.00047 37.9 2.6 32 61-92 987-1018(1627)
60 PRK15078 polysaccharide export 40.1 50 0.0011 30.3 4.7 39 62-100 211-263 (379)
61 PRK14898 DNA-directed RNA poly 39.3 32 0.0007 35.1 3.6 34 61-96 168-201 (858)
62 COG2501 S4-like RNA binding pr 37.6 46 0.001 23.1 3.1 27 64-90 37-63 (73)
63 PRK15175 Vi polysaccharide exp 37.6 62 0.0013 29.5 4.8 29 62-90 198-236 (355)
64 PF07385 DUF1498: Protein of u 37.2 69 0.0015 27.2 4.7 28 62-94 137-164 (225)
65 PRK10413 hydrogenase 2 accesso 36.3 67 0.0014 22.8 3.9 32 63-94 19-57 (82)
66 PF07591 PT-HINT: Pretoxin HIN 36.0 29 0.00064 26.7 2.2 28 73-100 70-97 (130)
67 PF12791 RsgI_N: Anti-sigma fa 34.0 63 0.0014 20.6 3.2 33 63-95 7-41 (56)
68 PRK10680 molybdopterin biosynt 33.9 50 0.0011 30.7 3.7 26 77-102 87-114 (411)
69 PF09926 DUF2158: Uncharacteri 33.8 28 0.00061 22.5 1.5 12 81-92 2-13 (53)
70 PRK00913 multifunctional amino 33.7 85 0.0018 29.9 5.3 60 58-117 294-368 (483)
71 TIGR02988 YaaA_near_RecF S4 do 32.9 50 0.0011 21.4 2.6 23 66-88 36-58 (59)
72 cd00887 MoeA MoeA family. Memb 32.4 56 0.0012 30.1 3.8 27 78-104 79-107 (394)
73 PRK09439 PTS system glucose-sp 32.1 81 0.0018 25.6 4.2 54 82-136 47-121 (169)
74 PF14592 Chondroitinas_B: Chon 30.8 76 0.0016 29.7 4.3 19 78-96 12-30 (425)
75 TIGR02219 phage_NlpC_fam putat 30.6 26 0.00056 27.1 1.1 18 73-90 70-87 (134)
76 PRK05015 aminopeptidase B; Pro 30.4 1.3E+02 0.0028 28.2 5.7 47 72-118 245-306 (424)
77 PRK10409 hydrogenase assembly 29.8 93 0.002 22.5 3.8 32 63-94 16-56 (90)
78 PRK06033 hypothetical protein; 29.6 23 0.00051 25.1 0.6 25 74-98 14-38 (83)
79 PRK08433 flagellar motor switc 29.2 24 0.00052 26.6 0.6 59 73-147 38-97 (111)
80 PLN03190 aminophospholipid tra 28.6 1.7E+02 0.0036 31.3 6.9 62 28-89 141-211 (1178)
81 PRK06788 flagellar motor switc 28.4 23 0.00049 27.1 0.4 66 73-154 40-106 (119)
82 PF06820 Phage_fiber_C: Putati 27.0 48 0.0011 21.9 1.7 26 80-105 5-31 (64)
83 smart00739 KOW KOW (Kyprides, 26.2 90 0.002 16.3 2.6 23 80-102 2-24 (28)
84 PRK10838 spr outer membrane li 25.8 44 0.00096 27.6 1.7 20 73-92 122-141 (190)
85 TIGR02480 fliN flagellar motor 24.4 29 0.00063 24.0 0.3 23 75-97 16-38 (77)
86 PRK01122 potassium-transportin 24.0 3.9E+02 0.0085 26.7 8.2 82 24-116 62-147 (679)
87 KOG3416 Predicted nucleic acid 23.9 52 0.0011 25.4 1.6 16 78-93 60-75 (134)
88 cd04451 S1_IF1 S1_IF1: Transla 23.8 2E+02 0.0043 18.8 4.4 12 79-90 40-51 (64)
89 PF00877 NLPC_P60: NlpC/P60 fa 23.5 1.1E+02 0.0024 22.0 3.3 34 71-105 43-76 (105)
90 TIGR01517 ATPase-IIB_Ca plasma 23.3 1.5E+02 0.0032 30.8 5.3 38 178-215 894-931 (941)
91 PF01479 S4: S4 domain; Inter 23.0 58 0.0013 19.8 1.5 21 66-86 28-48 (48)
92 smart00532 LIGANc Ligase N fam 23.0 47 0.001 31.2 1.5 25 76-100 359-385 (441)
93 COG0522 RpsD Ribosomal protein 23.0 72 0.0016 26.7 2.5 31 65-95 120-150 (205)
94 PRK14701 reverse gyrase; Provi 21.9 81 0.0018 34.8 3.2 35 61-95 959-993 (1638)
95 PRK14350 ligA NAD-dependent DN 21.9 40 0.00086 33.5 0.8 26 76-101 361-388 (669)
96 COG4854 Predicted membrane pro 21.8 3.6E+02 0.0079 20.4 6.9 44 23-66 30-75 (126)
97 COG4013 Uncharacterized protei 21.8 1.6E+02 0.0034 21.1 3.5 27 78-105 19-45 (91)
98 CHL00113 rps4 ribosomal protei 21.6 96 0.0021 25.9 2.9 27 65-91 115-141 (201)
99 PRK08097 ligB NAD-dependent DN 21.6 53 0.0012 31.9 1.6 24 77-100 357-382 (562)
100 PRK02290 3-dehydroquinate synt 21.5 86 0.0019 28.5 2.8 28 63-91 300-327 (344)
101 cd00320 cpn10 Chaperonin 10 Kd 21.5 3.2E+02 0.0069 19.6 6.9 41 94-138 33-77 (93)
102 COG1261 FlgA Flagellar basal b 21.4 2.5E+02 0.0054 23.8 5.4 65 75-141 140-217 (220)
103 PF13403 Hint_2: Hint domain 21.3 83 0.0018 24.7 2.4 26 74-99 15-40 (147)
104 PRK08983 fliN flagellar motor 21.3 42 0.0009 25.9 0.7 59 73-147 57-116 (127)
105 TIGR01647 ATPase-IIIA_H plasma 20.9 8.1E+02 0.018 24.7 9.8 34 83-116 100-134 (755)
106 PRK05327 rpsD 30S ribosomal pr 20.6 1.1E+02 0.0024 25.5 3.1 27 65-91 119-145 (203)
107 TIGR01017 rpsD_bact ribosomal 20.6 90 0.002 25.9 2.6 27 65-91 116-142 (200)
108 PRK14491 putative bifunctional 20.5 1.2E+02 0.0026 29.7 3.8 26 77-102 277-304 (597)
109 PRK14690 molybdopterin biosynt 20.4 1.2E+02 0.0026 28.3 3.6 26 77-102 103-130 (419)
110 PF11694 DUF3290: Protein of u 20.3 4.1E+02 0.009 21.0 6.2 69 21-89 43-115 (149)
111 TIGR00739 yajC preprotein tran 20.2 3.2E+02 0.007 19.2 8.4 11 46-56 25-35 (84)
No 1
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-41 Score=324.06 Aligned_cols=231 Identities=24% Similarity=0.263 Sum_probs=186.9
Q ss_pred chhhHHHHHHHHhhhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEE-CCeEEEEeCCCc
Q 025861 2 KVSANVIYLSGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTR-DGQRQKVSIYDL 80 (247)
Q Consensus 2 gl~~a~~~s~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r-~g~~~~v~~~~l 80 (247)
|++.|+++|.+..+.. .+|.++..+++++.++.++|.+.+.++++.+++|.++.|+ ++++++ ||++++|+.+++
T Consensus 156 a~~~A~~~s~~~~~~~----~yf~~aa~ii~l~~~G~~LE~~a~~ra~~ai~~L~~l~p~-~A~~~~~~~~~~~v~v~~v 230 (713)
T COG2217 156 ATIGAYAYSLYATLFP----VYFEEAAMLIFLFLLGRYLEARAKGRARRAIRALLDLAPK-TATVVRGDGEEEEVPVEEV 230 (713)
T ss_pred HHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-EEEEEecCCcEEEEEHHHC
Confidence 5566777776655444 3556666666668889999999999999999999999996 676655 566899999999
Q ss_pred ccCcEEEEcCCCeeeceEEEEeeCceEEeccccCCCCcceeecCCCCEEEecceEeeceEEEEEEEeccccccchhhhhh
Q 025861 81 VVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETL 160 (247)
Q Consensus 81 v~GDii~v~~G~~iP~D~~v~~g~~~~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~g~~~~~V~~~g~~T~~~~i~~~~ 160 (247)
++||++.|+|||+||+||++++|++ .+|||++||||.|+.|++||. |++||.|.+|..+++|+++|.+|+++||++++
T Consensus 231 ~~GD~v~VrpGE~IPvDG~V~~G~s-~vDeS~iTGEs~PV~k~~Gd~-V~aGtiN~~G~l~i~vt~~~~dt~la~Ii~LV 308 (713)
T COG2217 231 QVGDIVLVRPGERIPVDGVVVSGSS-SVDESMLTGESLPVEKKPGDE-VFAGTVNLDGSLTIRVTRVGADTTLARIIRLV 308 (713)
T ss_pred CCCCEEEECCCCEecCCeEEEeCcE-EeecchhhCCCCCEecCCCCE-EeeeEEECCccEEEEEEecCccCHHHHHHHHH
Confidence 9999999999999999999999999 799999999999999999999 99999999999999999999999999999999
Q ss_pred ccccccchhH-------HHHHHHHHHHHHHHHHHHhHhhccCCccHHHHHHHH-hHhhhhhhheeeecccccCCCCcccc
Q 025861 161 NEGMFDSWLF-------VGILVLTVAFQIIIVEFLGALASTVPLSWHLWLLCI-LIGAVSMPIAVVIKCIPVKKSEPKLQ 232 (247)
Q Consensus 161 ~~~~~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~il~ia~P~Al~l~~~P~a~~~~~~~ 232 (247)
++++.+|++. ...+++.+++...+.+.+++++.. .+|..|+++. .+|+++|||||+++ +|.+...+.-.
T Consensus 309 e~Aq~~Ka~iqrlaDr~a~~fvp~vl~ia~l~f~~w~~~~~--~~~~~a~~~a~avLVIaCPCALgLA-tP~ai~~g~g~ 385 (713)
T COG2217 309 EEAQSSKAPIQRLADRVASYFVPVVLVIAALTFALWPLFGG--GDWETALYRALAVLVIACPCALGLA-TPTAILVGIGR 385 (713)
T ss_pred HHHhhCCchHHHHHHHHHHccHHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHhheeeeCccHHHhH-HHHHHHHHHHH
Confidence 9999999654 344444444444443333333322 4677777776 48999999999999 99987766555
Q ss_pred -cccceeecCC
Q 025861 233 -HHDGYEEIPS 242 (247)
Q Consensus 233 -~~~~~~~~~~ 242 (247)
+++|+..++|
T Consensus 386 aA~~GILiK~g 396 (713)
T COG2217 386 AARRGILIKGG 396 (713)
T ss_pred HHhCceEEeCh
Confidence 5555555544
No 2
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-38 Score=302.52 Aligned_cols=240 Identities=19% Similarity=0.278 Sum_probs=194.7
Q ss_pred CchhhHHHHHHHHhhh--cCCCCCchhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEECCe-EEEEe
Q 025861 1 MKVSANVIYLSGVGLA--TEGWPEGMYDGLGIILS-ILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQ-RQKVS 76 (247)
Q Consensus 1 lgl~~a~~~s~~~~~~--~~~~~~~~~~~~~i~~~-v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g~-~~~v~ 76 (247)
|++.+++.+|.+...+ .++.+..|||...+++. +.++.++|...+++....++.|.++.|. ++.+..+|+ +++|+
T Consensus 315 L~t~aay~~S~~~~~~~~~~~~~~tfFdt~~MLi~fi~lgr~LE~~Ak~kts~alskLmsl~p~-~a~ii~~g~~e~eI~ 393 (951)
T KOG0207|consen 315 LGTTAAYFYSIFSLLAAVVFDSPPTFFDTSPMLITFITLGRWLESLAKGKTSEALSKLMSLAPS-KATIIEDGSEEKEIP 393 (951)
T ss_pred hHHHHHHHHHHHHHHHHHHccCcchhccccHHHHHHHHHHHHHHHHhhccchHHHHHHhhcCcc-cceEeecCCcceEee
Confidence 5678889988865432 22446678888887776 7778999999999999999999999985 888888886 89999
Q ss_pred CCCcccCcEEEEcCCCeeeceEEEEeeCceEEeccccCCCCcceeecCCCCEEEecceEeeceEEEEEEEeccccccchh
Q 025861 77 IYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKL 156 (247)
Q Consensus 77 ~~~lv~GDii~v~~G~~iP~D~~v~~g~~~~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~g~~~~~V~~~g~~T~~~~i 156 (247)
.+.+++||++.+.||++||+||++++|++ +||||++|||++||.|++|+. |.+||.|.+|...+++|++|+||.++||
T Consensus 394 v~lvq~gdivkV~pG~kiPvDG~Vv~Gss-~VDEs~iTGEs~PV~Kk~gs~-ViaGsiN~nG~l~VkaT~~g~dttla~I 471 (951)
T KOG0207|consen 394 VDLVQVGDIVKVKPGEKIPVDGVVVDGSS-EVDESLITGESMPVPKKKGST-VIAGSINLNGTLLVKATKVGGDTTLAQI 471 (951)
T ss_pred eeeeccCCEEEECCCCccccccEEEeCce-eechhhccCCceecccCCCCe-eeeeeecCCceEEEEEEeccccchHHHH
Confidence 99999999999999999999999999999 899999999999999999998 9999999999999999999999999999
Q ss_pred hhhhccccccchhH-----------HHHHHHHHHHHHHHHHHHhHhhccCC----ccHHHHHHHH-hHhhhhhhheeeec
Q 025861 157 METLNEGMFDSWLF-----------VGILVLTVAFQIIIVEFLGALASTVP----LSWHLWLLCI-LIGAVSMPIAVVIK 220 (247)
Q Consensus 157 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~-~il~ia~P~Al~l~ 220 (247)
.++++++|.+|++. .+.++.+.+..+++|.+++......+ ..+..|++.. .++++||||||+++
T Consensus 472 vkLVEEAQ~sKapiQq~aDkia~yFvP~Vi~lS~~t~~~w~~~g~~~~~~~~~~~~~~~~a~~~aisVlviACPCaLgLA 551 (951)
T KOG0207|consen 472 VKLVEEAQLSKAPIQQLADKIAGYFVPVVIVLSLATFVVWILIGKIVFKYPRSFFDAFSHAFQLAISVLVIACPCALGLA 551 (951)
T ss_pred HHHHHHHHcccchHHHHHHHhhhcCCchhhHHHHHHHHHHHHHccccccCcchhhHHHHHHHHhhheEEEEECchhhhcC
Confidence 99999999998643 33333344444444444444333334 2344555554 47999999999999
Q ss_pred ccccCCCCc-ccccccceeecCCCC
Q 025861 221 CIPVKKSEP-KLQHHDGYEEIPSGP 244 (247)
Q Consensus 221 ~~P~a~~~~-~~~~~~~~~~~~~~~ 244 (247)
+|.|+.-+ .-.+.+|+.+++|++
T Consensus 552 -TPtAvmvatgvgA~nGvLIKGge~ 575 (951)
T KOG0207|consen 552 -TPTAVMVATGVGATNGVLIKGGEA 575 (951)
T ss_pred -CceEEEEEechhhhcceEEcCcHH
Confidence 99976544 455777777777764
No 3
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=100.00 E-value=1.3e-37 Score=303.91 Aligned_cols=213 Identities=21% Similarity=0.282 Sum_probs=179.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEECCeEEEEeCCCcccCcEEEEcCCCeeeceEEEEe
Q 025861 23 GMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFIS 102 (247)
Q Consensus 23 ~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g~~~~v~~~~lv~GDii~v~~G~~iP~D~~v~~ 102 (247)
.|.++..++++++++.+++.+.++++++.+++|.++.++ +++++|||++++|++++|+|||+|.+++||+||+||++++
T Consensus 205 ~~~~a~~i~~l~~~g~~le~~~~~ra~~~~~~L~~l~p~-~a~vir~g~~~~v~~~~l~~GDiv~v~~G~~IP~Dg~vi~ 283 (741)
T PRK11033 205 ATAEAAMVLLLFLIGERLEGYAASRARRGVSALMALVPE-TATRLRDGEREEVAIADLRPGDVIEVAAGGRLPADGKLLS 283 (741)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-EEEEEECCEEEEEEHHHCCCCCEEEECCCCEEecceEEEE
Confidence 578888888889999999999999999999999999885 8899999999999999999999999999999999999999
Q ss_pred eCceEEeccccCCCCcceeecCCCCEEEecceEeeceEEEEEEEeccccccchhhhhhccccccchhH-------HHHHH
Q 025861 103 GYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWLF-------VGILV 175 (247)
Q Consensus 103 g~~~~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~g~~~~~V~~~g~~T~~~~i~~~~~~~~~~~~~~-------~~~~~ 175 (247)
|+. .+|||+|||||.|+.|++||. +|+||.|.+|.++++|+++|.+|.++||.+++++++.+++++ ..++.
T Consensus 284 g~~-~vdes~lTGEs~Pv~k~~Gd~-V~aGt~~~~G~~~i~V~~~g~~s~l~~I~~lv~~a~~~k~~~q~~~d~~a~~~~ 361 (741)
T PRK11033 284 PFA-SFDESALTGESIPVERATGEK-VPAGATSVDRLVTLEVLSEPGASAIDRILHLIEEAEERRAPIERFIDRFSRIYT 361 (741)
T ss_pred CcE-EeecccccCCCCCEecCCCCe-eccCCEEcCceEEEEEEeccccCHHHHHHHHHHHhhccCChHHHHHHHHHHHHH
Confidence 987 899999999999999999998 999999999999999999999999999999999988877643 34444
Q ss_pred HHHHHHHHHHHHHhHhhccCCccHHHHHHHH-hHhhhhhhheeeecccccCCCCcccc-cccceeecC
Q 025861 176 LTVAFQIIIVEFLGALASTVPLSWHLWLLCI-LIGAVSMPIAVVIKCIPVKKSEPKLQ-HHDGYEEIP 241 (247)
Q Consensus 176 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~il~ia~P~Al~l~~~P~a~~~~~~~-~~~~~~~~~ 241 (247)
..++++.+++++++++.. ...|..|+++. .+++++|||||+++ +|++...++.. .++++..++
T Consensus 362 ~~v~~~a~~~~~~~~~~~--~~~~~~~i~~a~svlviacPcaL~la-tP~a~~~~l~~aar~gilik~ 426 (741)
T PRK11033 362 PAIMLVALLVILVPPLLF--AAPWQEWIYRGLTLLLIGCPCALVIS-TPAAITSGLAAAARRGALIKG 426 (741)
T ss_pred HHHHHHHHHHHHHHHHHc--cCCHHHHHHHHHHHHHHhchhhhhhh-hHHHHHHHHHHHHHCCeEEcC
Confidence 444444444444432322 23466676665 58999999999999 99998776655 444444433
No 4
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=100.00 E-value=1.9e-37 Score=303.39 Aligned_cols=225 Identities=24% Similarity=0.280 Sum_probs=177.7
Q ss_pred hhhHHHHHHHHhhhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEECCeEEEEeCCCccc
Q 025861 3 VSANVIYLSGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVSIYDLVV 82 (247)
Q Consensus 3 l~~a~~~s~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g~~~~v~~~~lv~ 82 (247)
+++++++|++++ +|.+++.++++++++..++.++++++++.+++|.+..+ .+++|+|||++++|+++||+|
T Consensus 42 L~~aa~~s~~~~--------~~~~~~~i~~~~~i~~~i~~~qe~~a~~~~~~L~~~~~-~~~~V~Rdg~~~~I~~~~Lv~ 112 (755)
T TIGR01647 42 MEAAAIIAIALE--------NWVDFVIILGLLLLNATIGFIEENKAGNAVEALKQSLA-PKARVLRDGKWQEIPASELVP 112 (755)
T ss_pred HHHHHHHHHhhc--------chhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEECCEEEEEEhhhCcC
Confidence 345666666665 78899999998999999999999999999999988776 489999999999999999999
Q ss_pred CcEEEEcCCCeeeceEEEEeeCceEEeccccCCCCcceeecCCCCEEEecceEeeceEEEEEEEeccccccchhhhhhcc
Q 025861 83 GDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNE 162 (247)
Q Consensus 83 GDii~v~~G~~iP~D~~v~~g~~~~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~g~~~~~V~~~g~~T~~~~i~~~~~~ 162 (247)
||+|.+++||+|||||++++|+++.+|||+|||||.|+.|++++. +|+||.|.+|+++++|++||.+|.+||+.+++++
T Consensus 113 GDiV~l~~Gd~IPaDg~vi~g~~~~VDeS~LTGES~PV~K~~~~~-v~aGT~v~~G~~~~~V~~tG~~T~~g~i~~lv~~ 191 (755)
T TIGR01647 113 GDVVRLKIGDIVPADCRLFEGDYIQVDQAALTGESLPVTKKTGDI-AYSGSTVKQGEAEAVVTATGMNTFFGKAAALVQS 191 (755)
T ss_pred CCEEEECCCCEEeceEEEEecCceEEEcccccCCccceEeccCCe-eeccCEEEccEEEEEEEEcCCccHHHHHHHHhhc
Confidence 999999999999999999999866899999999999999999986 9999999999999999999999999999999998
Q ss_pred ccccchhHH-------HHHHHHHHHHHHHHHHHhHhhccCCccHHHHHH-HHhHhhhhhhheeeecccccCCCCcccc-c
Q 025861 163 GMFDSWLFV-------GILVLTVAFQIIIVEFLGALASTVPLSWHLWLL-CILIGAVSMPIAVVIKCIPVKKSEPKLQ-H 233 (247)
Q Consensus 163 ~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~il~ia~P~Al~l~~~P~a~~~~~~~-~ 233 (247)
++.+++++. ..+..++++.+++.++++++.. ..+|..++. .+.+++++|||+|.++ +|++...+... +
T Consensus 192 ~~~~~~~lq~~~~~i~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~i~vlv~a~P~~Lp~~-~~~~la~g~~r~a 268 (755)
T TIGR01647 192 TETGSGHLQKILSKIGLFLIVLIGVLVLIELVVLFFGR--GESFREGLQFALVLLVGGIPIAMPAV-LSVTMAVGAAELA 268 (755)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHhCCcchHHH-HHHHHHHHHHHHH
Confidence 877665543 2222222333333333332212 124444444 4467899999999999 88765443222 3
Q ss_pred ccceeec
Q 025861 234 HDGYEEI 240 (247)
Q Consensus 234 ~~~~~~~ 240 (247)
++++..+
T Consensus 269 k~gilvk 275 (755)
T TIGR01647 269 KKKAIVT 275 (755)
T ss_pred hCCeEEc
Confidence 4444433
No 5
>PRK10671 copA copper exporting ATPase; Provisional
Probab=100.00 E-value=1.9e-37 Score=306.85 Aligned_cols=236 Identities=21% Similarity=0.222 Sum_probs=181.7
Q ss_pred CchhhHHHHHHHHhhhcC----CCCCchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEECCeEEEE
Q 025861 1 MKVSANVIYLSGVGLATE----GWPEGMYDG-LGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKV 75 (247)
Q Consensus 1 lgl~~a~~~s~~~~~~~~----~~~~~~~~~-~~i~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g~~~~v 75 (247)
+|.++|+++|++..+... +....||+. ..+++++.++.++|...+.++++.+++|.++.|+ +++++|||++++|
T Consensus 258 l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~le~~~~~~~~~~~~~L~~l~p~-~a~~~~~~~~~~v 336 (834)
T PRK10671 258 LGTGAAWLYSMSVNLWPQWFPMEARHLYYEASAMIIGLINLGHMLEARARQRSSKALEKLLDLTPP-TARVVTDEGEKSV 336 (834)
T ss_pred HHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-EEEEEeCCcEEEE
Confidence 356677777765544321 111347775 4555568889999999999999999999999884 8999999999999
Q ss_pred eCCCcccCcEEEEcCCCeeeceEEEEeeCceEEeccccCCCCcceeecCCCCEEEecceEeeceEEEEEEEeccccccch
Q 025861 76 SIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWGK 155 (247)
Q Consensus 76 ~~~~lv~GDii~v~~G~~iP~D~~v~~g~~~~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~g~~~~~V~~~g~~T~~~~ 155 (247)
+.++|+|||+|.+++||+||+||++++|+. .||||++||||.|+.|++||. +|+||.|.+|.++++|+++|++|+++|
T Consensus 337 ~~~~l~~GD~v~v~~G~~iP~Dg~v~~g~~-~vdeS~lTGEs~pv~k~~gd~-V~aGt~~~~G~~~~~v~~~g~~t~l~~ 414 (834)
T PRK10671 337 PLADVQPGMLLRLTTGDRVPVDGEITQGEA-WLDEAMLTGEPIPQQKGEGDS-VHAGTVVQDGSVLFRASAVGSHTTLSR 414 (834)
T ss_pred EHHHcCCCCEEEEcCCCEeeeeEEEEEceE-EEeehhhcCCCCCEecCCCCE-EEecceecceeEEEEEEEEcCcChHHH
Confidence 999999999999999999999999999987 899999999999999999998 999999999999999999999999999
Q ss_pred hhhhhccccccchhH-------HHHHHHHHHHHHHHHHHHhHhhccCCccHH-HHHHHHhHhhhhhhheeeecccccCCC
Q 025861 156 LMETLNEGMFDSWLF-------VGILVLTVAFQIIIVEFLGALASTVPLSWH-LWLLCILIGAVSMPIAVVIKCIPVKKS 227 (247)
Q Consensus 156 i~~~~~~~~~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~il~ia~P~Al~l~~~P~a~~ 227 (247)
+.+++++++.+|++. ..+++.+++++.++.+++++ ..+....|. .+..++.+++++|||||+++ +|++..
T Consensus 415 i~~lv~~a~~~k~~~~~~~d~~a~~~v~~v~~~a~~~~~~~~-~~~~~~~~~~~~~~a~~vlv~acPcaL~la-~p~a~~ 492 (834)
T PRK10671 415 IIRMVRQAQSSKPEIGQLADKISAVFVPVVVVIALVSAAIWY-FFGPAPQIVYTLVIATTVLIIACPCALGLA-TPMSII 492 (834)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCchHHHHHHHHHHHHHHHhcccchhhh-HHHHHH
Confidence 999999887777543 33333333333333222222 222222232 23344568999999999999 999876
Q ss_pred Ccccc-cccceeecC
Q 025861 228 EPKLQ-HHDGYEEIP 241 (247)
Q Consensus 228 ~~~~~-~~~~~~~~~ 241 (247)
.+... .++++..++
T Consensus 493 ~~~~~~a~~gilvk~ 507 (834)
T PRK10671 493 SGVGRAAEFGVLVRD 507 (834)
T ss_pred HHHHHHHHCCeEEec
Confidence 65555 455554443
No 6
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=100.00 E-value=1.8e-37 Score=295.07 Aligned_cols=232 Identities=19% Similarity=0.250 Sum_probs=173.8
Q ss_pred chhhHHHHHHHHhhhcC----CCCCchhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEEC-CeEEEE
Q 025861 2 KVSANVIYLSGVGLATE----GWPEGMYDGLGIILS-ILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRD-GQRQKV 75 (247)
Q Consensus 2 gl~~a~~~s~~~~~~~~----~~~~~~~~~~~i~~~-v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~-g~~~~v 75 (247)
|.+.++++|++..+... .....||++++++++ ++++.+++...++++++.+++|.+..|+ +++++|+ |++++|
T Consensus 27 ~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~le~~~~~~a~~~~~~L~~~~p~-~a~~~~~~~~~~~v 105 (562)
T TIGR01511 27 GTTVAYGYSLVALLANQVLTGLHVHTFFDASAMLITFILLGRWLEMLAKGRASDALSKLAKLQPS-TATLLTKDGSIEEV 105 (562)
T ss_pred HHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEEECCCeEEEE
Confidence 44556666655443321 112357777766554 6667899999999999999999998875 7788875 677999
Q ss_pred eCCCcccCcEEEEcCCCeeeceEEEEeeCceEEeccccCCCCcceeecCCCCEEEecceEeeceEEEEEEEeccccccch
Q 025861 76 SIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWGK 155 (247)
Q Consensus 76 ~~~~lv~GDii~v~~G~~iP~D~~v~~g~~~~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~g~~~~~V~~~g~~T~~~~ 155 (247)
++++|+|||+|.+++||+||+||++++|++ .||||++||||.|+.|++||. +|+||.|.+|.++++|+++|.+|+++|
T Consensus 106 ~~~~l~~GDii~v~~Ge~iP~Dg~v~~g~~-~vdes~lTGEs~pv~k~~gd~-V~aGt~~~~g~~~~~v~~~g~~t~~~~ 183 (562)
T TIGR01511 106 PVALLQPGDIVKVLPGEKIPVDGTVIEGES-EVDESLVTGESLPVPKKVGDP-VIAGTVNGTGSLVVRATATGEDTTLAQ 183 (562)
T ss_pred EHHHCCCCCEEEECCCCEecCceEEEECce-EEehHhhcCCCCcEEcCCCCE-EEeeeEECCceEEEEEEEecCCChHHH
Confidence 999999999999999999999999999998 799999999999999999998 999999999999999999999999999
Q ss_pred hhhhhccccccchhHHHHHHHHHHHHHHHHHHHhHhhccCCccH-HHHHHHHhHhhhhhhheeeecccccCCCCcccc-c
Q 025861 156 LMETLNEGMFDSWLFVGILVLTVAFQIIIVEFLGALASTVPLSW-HLWLLCILIGAVSMPIAVVIKCIPVKKSEPKLQ-H 233 (247)
Q Consensus 156 i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~il~ia~P~Al~l~~~P~a~~~~~~~-~ 233 (247)
+.+++++++.+|+++......+...++.++.++..+... .| ..+..++.+++++|||||.++ +|++...+... .
T Consensus 184 i~~~v~~a~~~k~~~~~~~d~~a~~~~~~v~~~a~~~~~---~~~~~~~~~~svlvvacPcaL~la-~p~a~~~~~~~aa 259 (562)
T TIGR01511 184 IVRLVRQAQQSKAPIQRLADKVAGYFVPVVIAIALITFV---IWLFALEFAVTVLIIACPCALGLA-TPTVIAVATGLAA 259 (562)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccchhhhH-HHHHHHHHHHHHH
Confidence 999999988777654332222221111111111111000 01 233344568999999999999 99988776655 4
Q ss_pred ccceeec
Q 025861 234 HDGYEEI 240 (247)
Q Consensus 234 ~~~~~~~ 240 (247)
++++..+
T Consensus 260 ~~gIlik 266 (562)
T TIGR01511 260 KNGVLIK 266 (562)
T ss_pred HCCeEEc
Confidence 4444443
No 7
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=100.00 E-value=6e-37 Score=290.20 Aligned_cols=220 Identities=21% Similarity=0.294 Sum_probs=177.3
Q ss_pred hhHHHHHHHHhhhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEECCeEEEEeCCCcccC
Q 025861 4 SANVIYLSGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVSIYDLVVG 83 (247)
Q Consensus 4 ~~a~~~s~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g~~~~v~~~~lv~G 83 (247)
+.+++.+++++ .|+++..++++++++.+++.++++++++.++++.+..+. +++|+|||+++++++++|+||
T Consensus 6 ~~a~~~~~~~~--------~~~~~~~i~~~~~~~~~l~~~~~~~a~~~l~~l~~~~~~-~~~v~r~g~~~~i~~~~l~~G 76 (536)
T TIGR01512 6 ALAALGAVAIG--------EYLEGALLLLLFSIGETLEEYASGRARRALKALMELAPD-TARVLRGGSLEEVAVEELKVG 76 (536)
T ss_pred HHHHHHHHHHh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEEECCEEEEEEHHHCCCC
Confidence 45555565554 689999998889999999999999999999999988774 899999999999999999999
Q ss_pred cEEEEcCCCeeeceEEEEeeCceEEeccccCCCCcceeecCCCCEEEecceEeeceEEEEEEEeccccccchhhhhhccc
Q 025861 84 DIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEG 163 (247)
Q Consensus 84 Dii~v~~G~~iP~D~~v~~g~~~~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~g~~~~~V~~~g~~T~~~~i~~~~~~~ 163 (247)
|++.+++||++||||++++|+. .||||++||||.|+.|++|+. +|+||.+.+|+++++|+++|.+|++||+.++++++
T Consensus 77 Div~v~~G~~iP~Dg~ii~g~~-~vdes~lTGEs~pv~k~~g~~-v~aGt~v~~G~~~~~V~~~g~~t~~~~i~~~~~~~ 154 (536)
T TIGR01512 77 DVVVVKPGERVPVDGVVLSGTS-TVDESALTGESVPVEKAPGDE-VFAGAINLDGVLTIVVTKLPADSTIAKIVNLVEEA 154 (536)
T ss_pred CEEEEcCCCEeecceEEEeCcE-EEEecccCCCCCcEEeCCCCE-EEeeeEECCceEEEEEEEeccccHHHHHHHHHHHH
Confidence 9999999999999999999987 799999999999999999997 99999999999999999999999999999999987
Q ss_pred cccchhH-------HHHHHHHHHHHHHHHHHHhHhhccCCccHHHHHHHHhHhhhhhhheeeecccccCCCCccccc-cc
Q 025861 164 MFDSWLF-------VGILVLTVAFQIIIVEFLGALASTVPLSWHLWLLCILIGAVSMPIAVVIKCIPVKKSEPKLQH-HD 235 (247)
Q Consensus 164 ~~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~ia~P~Al~l~~~P~a~~~~~~~~-~~ 235 (247)
+.+++++ ...+...++...++.++.+++... ..+ .+..++.+++++|||||.++ +|++...+.... .+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~svlv~~~P~aL~la-~~~~~~~~~~~~~k~ 230 (536)
T TIGR01512 155 QSRKAKTQRFIDRFARYYTPVVLAIALAIWLVPGLLKR--WPF-WVYRALVLLVVASPCALVIS-APAAYLSAISAAARH 230 (536)
T ss_pred hhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cHH-HHHHHHHHHhhcCccccccc-hHHHHHHHHHHHHHC
Confidence 7666543 333333333333333333332221 112 23334568999999999999 999876666553 34
Q ss_pred cee
Q 025861 236 GYE 238 (247)
Q Consensus 236 ~~~ 238 (247)
++.
T Consensus 231 gil 233 (536)
T TIGR01512 231 GIL 233 (536)
T ss_pred CeE
Confidence 443
No 8
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=100.00 E-value=2.8e-36 Score=299.82 Aligned_cols=215 Identities=26% Similarity=0.352 Sum_probs=172.5
Q ss_pred hhhHHHHHHHHhhhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEECCeEEEEeCCCccc
Q 025861 3 VSANVIYLSGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVSIYDLVV 82 (247)
Q Consensus 3 l~~a~~~s~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g~~~~v~~~~lv~ 82 (247)
+++++++|++++ .|.+++.++++++++..++.++++++++.+++|.+..+. +++|+|||++++|+++||+|
T Consensus 67 L~~aa~ls~~~g--------~~~~~~~i~~~i~~~~~i~~~qe~~a~~~l~~L~~l~~~-~~~ViRdg~~~~I~~~eLv~ 137 (884)
T TIGR01522 67 LIASAVISVFMG--------NIDDAVSITLAILIVVTVGFVQEYRSEKSLEALNKLVPP-ECHLIREGKLEHVLASTLVP 137 (884)
T ss_pred HHHHHHHHHHHc--------chhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCC-eeEEEECCEEEEEEHHHCcc
Confidence 345666666665 788998888888888999999999999999999988774 89999999999999999999
Q ss_pred CcEEEEcCCCeeeceEEEEeeCceEEeccccCCCCcceeecCCC-------------CEEEecceEeeceEEEEEEEecc
Q 025861 83 GDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDEN-------------PFLLAGTKVQDGSVKMLVTTVGM 149 (247)
Q Consensus 83 GDii~v~~G~~iP~D~~v~~g~~~~vdes~lTGEs~pv~k~~~~-------------~~v~~Gt~~~~g~~~~~V~~~g~ 149 (247)
||+|.+++||+|||||++++|+.+.||||+|||||.|+.|++++ |++|+||.|.+|+++++|++||.
T Consensus 138 GDiv~l~~Gd~IPaDg~ii~g~~l~VDES~LTGES~pv~K~~~~~~~~~~~~~~~~~n~v~~GT~v~~G~~~~~V~~tG~ 217 (884)
T TIGR01522 138 GDLVCLSVGDRVPADLRIVEAVDLSIDESNLTGETTPVSKVTAPIPAATNGDLAERSNIAFMGTLVRCGHGKGIVVGTGS 217 (884)
T ss_pred CCEEEecCCCEEeeeEEEEEcCceEEEcccccCCCcceecccccccccccccccccCceEEeCCEEEeeeEEEEEEEecC
Confidence 99999999999999999999977789999999999999998764 57999999999999999999999
Q ss_pred ccccchhhhhhccccccchhHHH-------HHHHHHHHHHHHHHHHhHhhccCCccHHHH-HHHHhHhhhhhhheeeecc
Q 025861 150 RTEWGKLMETLNEGMFDSWLFVG-------ILVLTVAFQIIIVEFLGALASTVPLSWHLW-LLCILIGAVSMPIAVVIKC 221 (247)
Q Consensus 150 ~T~~~~i~~~~~~~~~~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~il~ia~P~Al~l~~ 221 (247)
+|.+||+.+++++++..++++.+ .+..+.++...++.+++++. ...|... ...+.+++++|||+|.++
T Consensus 218 ~T~~gki~~~v~~~~~~kt~lq~~l~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~llv~aiP~~Lp~~- 293 (884)
T TIGR01522 218 NTEFGAVFKMMQAIEKPKTPLQKSMDLLGKQLSLVSFGVIGVICLVGWFQ---GKDWLEMFTISVSLAVAAIPEGLPII- 293 (884)
T ss_pred ccHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHccchHHHH-
Confidence 99999999999987776765432 22222222222333333322 1234433 344467899999999998
Q ss_pred cccCCCCcc
Q 025861 222 IPVKKSEPK 230 (247)
Q Consensus 222 ~P~a~~~~~ 230 (247)
+|++...+.
T Consensus 294 vt~~l~~~~ 302 (884)
T TIGR01522 294 VTVTLALGV 302 (884)
T ss_pred HHHHHHHHH
Confidence 887655543
No 9
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=100.00 E-value=1.4e-35 Score=296.37 Aligned_cols=227 Identities=38% Similarity=0.551 Sum_probs=173.9
Q ss_pred hhhHHHHHHHHhhhc-----CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEECCeEEEEeC
Q 025861 3 VSANVIYLSGVGLAT-----EGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVSI 77 (247)
Q Consensus 3 l~~a~~~s~~~~~~~-----~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g~~~~v~~ 77 (247)
+++++++|++++.+. .+...+|++++.++++++++..++.+++++++++.+++++...+.+++|+|||++++|++
T Consensus 102 l~~~ails~~~~~~~~~~~~~~~~~~~~~~~~il~~v~~~~~i~~~~e~~~~~~~~~l~~~~~~~~~~ViRdG~~~~I~~ 181 (941)
T TIGR01517 102 LSVAAVVSLVLGLPEPGEGKADTETGWIEGVAILVSVILVVLVTAVNDYKKELQFRQLNREKSAQKIAVIRGGQEQQISI 181 (941)
T ss_pred HHHHHHHHHHHhhcccccccCccccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCceEEEECCEEEEEeH
Confidence 457788888777441 233457999999999999999999999999999999998765556899999999999999
Q ss_pred CCcccCcEEEEcCCCeeeceEEEEeeCceEEeccccCCCCcceeecCCC-CEEEecceEeeceEEEEEEEeccccccchh
Q 025861 78 YDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDEN-PFLLAGTKVQDGSVKMLVTTVGMRTEWGKL 156 (247)
Q Consensus 78 ~~lv~GDii~v~~G~~iP~D~~v~~g~~~~vdes~lTGEs~pv~k~~~~-~~v~~Gt~~~~g~~~~~V~~~g~~T~~~~i 156 (247)
+||+|||+|.+++||+|||||++++|+.+.||||+|||||.|+.|++++ |++|+||.+.+|+++++|++||.+|.+||+
T Consensus 182 ~~Lv~GDiV~l~~Gd~IPaD~~li~g~~l~VdES~LTGES~pv~K~~~~~n~v~~GT~v~~G~~~~iV~~tG~~T~~gki 261 (941)
T TIGR01517 182 HDIVVGDIVSLSTGDVVPADGVFISGLSLEIDESSITGESDPIKKGAPKDSFLLSGTVVNEGSGRMLVTAVGVNSFGGKL 261 (941)
T ss_pred HHCCCCCEEEECCCCEecccEEEEEcCcEEEEecccCCCCCcccccCCCCceEEeCCeEEeeEEEEEEEEeCCCcHHHHH
Confidence 9999999999999999999999999966699999999999999998765 589999999999999999999999999999
Q ss_pred hhhhccccccch------hHHHHHHHHHHHHHHHHHHHh---Hhhc---cC---C----ccHHH-HHHHHhHhhhhhhhe
Q 025861 157 METLNEGMFDSW------LFVGILVLTVAFQIIIVEFLG---ALAS---TV---P----LSWHL-WLLCILIGAVSMPIA 216 (247)
Q Consensus 157 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~i~~~~~---~~~~---~~---~----~~~~~-~~~~~~il~ia~P~A 216 (247)
.+.+++++.+++ ++...+..+++..+++.++++ +... .. + ..+.. +..++.+++++||||
T Consensus 262 ~~~~~~~~~~t~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~llv~~iP~~ 341 (941)
T TIGR01517 262 MMELRAEGEDTPLQEKLSELAGLIGKFGMGSAVLLFLVLSLRYVFRIIRGDGRDTEEDAQTFLDHFIIAVTIVVVAVPEG 341 (941)
T ss_pred HHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHhhCCCc
Confidence 999987654331 222233222222222222111 1111 00 0 02232 333445789999999
Q ss_pred eeecccccCCCCcc
Q 025861 217 VVIKCIPVKKSEPK 230 (247)
Q Consensus 217 l~l~~~P~a~~~~~ 230 (247)
|.++ +|++...+.
T Consensus 342 Lp~~-vti~l~~~~ 354 (941)
T TIGR01517 342 LPLA-VTIALAYSM 354 (941)
T ss_pred hHHH-HHHHHHHHH
Confidence 9999 888765443
No 10
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=100.00 E-value=1.8e-35 Score=293.52 Aligned_cols=211 Identities=19% Similarity=0.261 Sum_probs=171.0
Q ss_pred hhHHHHHHHHhhhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEEC------CeEEEEeC
Q 025861 4 SANVIYLSGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRD------GQRQKVSI 77 (247)
Q Consensus 4 ~~a~~~s~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~------g~~~~v~~ 77 (247)
++++++|++.+ +|.+++.++++++++.+++.++++++++.+++|.++.++ +++|+|| |++++|++
T Consensus 110 ~~aa~ls~~~~--------~~~~a~~I~~iv~i~~~i~~~qe~ra~~~~~~L~~l~~~-~a~ViR~g~~~~~g~~~~I~~ 180 (902)
T PRK10517 110 TILGAISYATE--------DLFAAGVIALMVAISTLLNFIQEARSTKAADALKAMVSN-TATVLRVINDKGENGWLEIPI 180 (902)
T ss_pred HHHHHHHHHHc--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-eEEEEECCccCCCCeEEEEEH
Confidence 45666666554 788999999999999999999999999999999998874 8999999 78999999
Q ss_pred CCcccCcEEEEcCCCeeeceEEEEeeCceEEeccccCCCCcceeecCCC------------CEEEecceEeeceEEEEEE
Q 025861 78 YDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDEN------------PFLLAGTKVQDGSVKMLVT 145 (247)
Q Consensus 78 ~~lv~GDii~v~~G~~iP~D~~v~~g~~~~vdes~lTGEs~pv~k~~~~------------~~v~~Gt~~~~g~~~~~V~ 145 (247)
+||+|||+|.+++||+|||||++++|+++.||||+|||||.|+.|++++ |++|+||.|.+|+++++|+
T Consensus 181 ~eLvpGDiV~l~~Gd~IPaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~vV~ 260 (902)
T PRK10517 181 DQLVPGDIIKLAAGDMIPADLRILQARDLFVAQASLTGESLPVEKFATTRQPEHSNPLECDTLCFMGTNVVSGTAQAVVI 260 (902)
T ss_pred HhCCCCCEEEECCCCEEeeeEEEEEcCceEEEecCcCCCCCceecccccccccccCccccccceeeCceEeeeeEEEEEE
Confidence 9999999999999999999999999988889999999999999998764 4799999999999999999
Q ss_pred EeccccccchhhhhhccccccchhHHHHH-------HHHHHHHHHHHHHHhHhhccCCccHH-HHHHHHhHhhhhhhhee
Q 025861 146 TVGMRTEWGKLMETLNEGMFDSWLFVGIL-------VLTVAFQIIIVEFLGALASTVPLSWH-LWLLCILIGAVSMPIAV 217 (247)
Q Consensus 146 ~~g~~T~~~~i~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~il~ia~P~Al 217 (247)
+||.+|.+||+.+++++++.+++++...+ ..+..+++.++.+++.+.. ..|. .+..++.+++.+|||+|
T Consensus 261 atG~~T~~GkI~~~v~~~~~~~t~lq~~~~~i~~~l~~~~~~~~~~v~~i~~~~~---~~~~~~l~~alsv~V~~~Pe~L 337 (902)
T PRK10517 261 ATGANTWFGQLAGRVSEQDSEPNAFQQGISRVSWLLIRFMLVMAPVVLLINGYTK---GDWWEAALFALSVAVGLTPEML 337 (902)
T ss_pred EeccccHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhc---CCHHHHHHHHHHHHHHHcccHH
Confidence 99999999999999998877777654322 2222333333333322221 2333 34445567889999999
Q ss_pred eecccccCCC
Q 025861 218 VIKCIPVKKS 227 (247)
Q Consensus 218 ~l~~~P~a~~ 227 (247)
.++ +|++..
T Consensus 338 P~~-vt~~la 346 (902)
T PRK10517 338 PMI-VTSTLA 346 (902)
T ss_pred HHH-HHHHHH
Confidence 887 776543
No 11
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=100.00 E-value=2.6e-35 Score=282.76 Aligned_cols=218 Identities=18% Similarity=0.192 Sum_probs=172.8
Q ss_pred hhhHHHHHHHHhhhcC------CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEECCe-EEEE
Q 025861 3 VSANVIYLSGVGLATE------GWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQ-RQKV 75 (247)
Q Consensus 3 l~~a~~~s~~~~~~~~------~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g~-~~~v 75 (247)
+++++++|++++++.. .+..+|...+.+++.++++.+++.++++++++..++|++..++.+++|+|||+ +++|
T Consensus 39 l~~~a~ls~~~~~~~~~~~~~~~~~~~~~i~~~l~~~vl~~~~~e~~ae~ra~~~~~sL~~l~~~~~a~vir~g~~~~~V 118 (679)
T PRK01122 39 VEVGSILTTILTIAPLLFQSGGPAGFNLAITLWLWFTVLFANFAEALAEGRGKAQADSLRGAKKDTFARKLREPGAAEEV 118 (679)
T ss_pred HHHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCEEEEE
Confidence 5688899988876531 23356777788888888999999999999999999999998766799999988 8999
Q ss_pred eCCCcccCcEEEEcCCCeeeceEEEEeeCceEEeccccCCCCcceeecCCCC--EEEecceEeeceEEEEEEEecccccc
Q 025861 76 SIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENP--FLLAGTKVQDGSVKMLVTTVGMRTEW 153 (247)
Q Consensus 76 ~~~~lv~GDii~v~~G~~iP~D~~v~~g~~~~vdes~lTGEs~pv~k~~~~~--~v~~Gt~~~~g~~~~~V~~~g~~T~~ 153 (247)
++++|++||+|.+++||+||+||++++|.. .+|||++||||.|+.|++|+. .+|+||.|.+|++.++|+++|.+|++
T Consensus 119 ~~~eL~~GDiV~v~~Gd~IPaDG~vieG~a-~VDESaLTGES~PV~K~~G~~~~~V~aGT~v~~G~~~i~Vta~g~~S~l 197 (679)
T PRK01122 119 PATELRKGDIVLVEAGEIIPADGEVIEGVA-SVDESAITGESAPVIRESGGDFSSVTGGTRVLSDWIVIRITANPGESFL 197 (679)
T ss_pred EHHHcCCCCEEEEcCCCEEEEEEEEEEccE-EEEcccccCCCCceEeCCCCccCeEEeceEEEeeeEEEEEEEecccCHH
Confidence 999999999999999999999999999987 899999999999999998753 49999999999999999999999999
Q ss_pred chhhhhhccccccchhHHHHHHH-------HHHHHHHHHHHHhHhhccCCccHHHHHHHHhHhhhhhhheeeecccccCC
Q 025861 154 GKLMETLNEGMFDSWLFVGILVL-------TVAFQIIIVEFLGALASTVPLSWHLWLLCILIGAVSMPIAVVIKCIPVKK 226 (247)
Q Consensus 154 ~~i~~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~ia~P~Al~l~~~P~a~ 226 (247)
||+.+++++++.+|++....... ++++.++.+.++.+ +.+. .+ .+...+.+++++|||+++.. +|+..
T Consensus 198 gki~~lve~a~~~ktp~e~al~~l~~~l~~i~l~~~~~~~~~~~-~~g~--~~-~l~~~iallV~aiP~alg~l-~~~i~ 272 (679)
T PRK01122 198 DRMIALVEGAKRQKTPNEIALTILLAGLTIIFLLVVATLPPFAA-YSGG--AL-SITVLVALLVCLIPTTIGGL-LSAIG 272 (679)
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HhCc--hH-HHHHHHHHHHHcccchhhhH-HHHHH
Confidence 99999999988888765322211 11111111111111 1111 22 34444567899999999887 77653
No 12
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=100.00 E-value=2.4e-35 Score=292.20 Aligned_cols=212 Identities=23% Similarity=0.300 Sum_probs=169.9
Q ss_pred hhhHHHHHHHHhhhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEE------CCeEEEEe
Q 025861 3 VSANVIYLSGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTR------DGQRQKVS 76 (247)
Q Consensus 3 l~~a~~~s~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r------~g~~~~v~ 76 (247)
+++++++|++++ +|++++.++++++++..++.++++++++..++|+++.+ .+++|+| ||++++|+
T Consensus 75 L~~~a~ls~~~~--------~~~~~~iI~~iv~~~~~i~~~~e~~a~ka~~~L~~l~~-~~~~V~R~~~~~~dg~~~~I~ 145 (867)
T TIGR01524 75 LAMLMGVSYLTD--------DLEATVIIALMVLASGLLGFIQESRAERAAYALKNMVK-NTATVLRVINENGNGSMDEVP 145 (867)
T ss_pred HHHHHHHHHHHh--------hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CeeEEEEecccCCCCeEEEEE
Confidence 345666666554 78999999999999999999999999999999998877 4899999 99999999
Q ss_pred CCCcccCcEEEEcCCCeeeceEEEEeeCceEEeccccCCCCcceeecCCC------------CEEEecceEeeceEEEEE
Q 025861 77 IYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDEN------------PFLLAGTKVQDGSVKMLV 144 (247)
Q Consensus 77 ~~~lv~GDii~v~~G~~iP~D~~v~~g~~~~vdes~lTGEs~pv~k~~~~------------~~v~~Gt~~~~g~~~~~V 144 (247)
++||+|||+|.+++||+|||||++++|+++.||||+|||||.|+.|.+++ |++|+||.|.+|+++++|
T Consensus 146 ~~eLv~GDiV~l~~Gd~VPaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~n~vfaGT~v~~G~~~~~V 225 (867)
T TIGR01524 146 IDALVPGDLIELAAGDIIPADARVISARDLFINQSALTGESLPVEKFVEDKRARDPEILERENLCFMGTNVLSGHAQAVV 225 (867)
T ss_pred hhcCCCCCEEEECCCCEEcccEEEEecCceEEEcccccCCCCcccccCCccccccccccccccceecCCeEEEeEEEEEE
Confidence 99999999999999999999999999988889999999999999998874 479999999999999999
Q ss_pred EEeccccccchhhhhhccccccchhH-------HHHHHHHHHHHHHHHHHHhHhhccCCccHH-HHHHHHhHhhhhhhhe
Q 025861 145 TTVGMRTEWGKLMETLNEGMFDSWLF-------VGILVLTVAFQIIIVEFLGALASTVPLSWH-LWLLCILIGAVSMPIA 216 (247)
Q Consensus 145 ~~~g~~T~~~~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~il~ia~P~A 216 (247)
++||.+|.+||+.+.+++ ..+++++ .+.+..+..++++++.+++.+.. ..|. .+..++.+++.+|||+
T Consensus 226 ~~tG~~T~~gki~~~v~~-~~~~t~lq~~~~~i~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~al~l~v~~iP~~ 301 (867)
T TIGR01524 226 LATGSSTWFGSLAIAATE-RRGQTAFDKGVKSVSKLLIRFMLVMVPVVLMINGLMK---GDWLEAFLFALAVAVGLTPEM 301 (867)
T ss_pred EEEcCccHHHHHHHHhhC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHheehHHHhc---CCHHHHHHHHHHHHHHhCcch
Confidence 999999999999999988 4444443 23333333333333323322221 2343 3445556789999999
Q ss_pred eeecccccCCCC
Q 025861 217 VVIKCIPVKKSE 228 (247)
Q Consensus 217 l~l~~~P~a~~~ 228 (247)
|.++ +|++...
T Consensus 302 Lp~~-vt~~la~ 312 (867)
T TIGR01524 302 LPMI-VSSNLAK 312 (867)
T ss_pred HHHH-HHHHHHH
Confidence 9888 7776544
No 13
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=100.00 E-value=3.5e-35 Score=279.42 Aligned_cols=203 Identities=23% Similarity=0.262 Sum_probs=168.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEECC-eEEEEeCCCcccCcEEEEcCCCeeeceEEEE
Q 025861 23 GMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDG-QRQKVSIYDLVVGDIVHLSIGDQVPADGIFI 101 (247)
Q Consensus 23 ~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g-~~~~v~~~~lv~GDii~v~~G~~iP~D~~v~ 101 (247)
.|.++..++++++++.+++.++++++++.++++.+..++ +++++||| ++++++.++|+|||+|.+++||.+||||+++
T Consensus 17 ~~~~~~~i~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~-~~~v~r~~g~~~~i~~~~l~~GDiv~v~~G~~iP~Dg~vi 95 (556)
T TIGR01525 17 LVLEGALLLFLFLLGETLEERAKGRASDALSALLALAPS-TARVLQGDGSEEEVPVEELQVGDIVIVRPGERIPVDGVVI 95 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEEECCCeEEEEEHHHCCCCCEEEECCCCEeccceEEE
Confidence 678888999999999999999999999999999888774 89999996 9999999999999999999999999999999
Q ss_pred eeCceEEeccccCCCCcceeecCCCCEEEecceEeeceEEEEEEEeccccccchhhhhhccccccchhH-------HHHH
Q 025861 102 SGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWLF-------VGIL 174 (247)
Q Consensus 102 ~g~~~~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~g~~~~~V~~~g~~T~~~~i~~~~~~~~~~~~~~-------~~~~ 174 (247)
+|+. .||||++||||.|+.|++|+. +|+||.+.+|.++++|+++|.+|++||+.+.+++++.+++++ ...+
T Consensus 96 ~g~~-~vdes~lTGEs~pv~k~~g~~-v~aGt~v~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~ 173 (556)
T TIGR01525 96 SGES-EVDESALTGESMPVEKKEGDE-VFAGTINGDGSLTIRVTKLGEDSTLAQIVKLVEEAQSSKAPIQRLADRIASYY 173 (556)
T ss_pred ecce-EEeehhccCCCCCEecCCcCE-EeeceEECCceEEEEEEEecccCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHH
Confidence 9997 799999999999999999997 999999999999999999999999999999998877666543 2333
Q ss_pred HHHHHHHHHHHHHHhHhhccCCccHHHHHHHHhHhhhhhhheeeecccccCCCCccccc
Q 025861 175 VLTVAFQIIIVEFLGALASTVPLSWHLWLLCILIGAVSMPIAVVIKCIPVKKSEPKLQH 233 (247)
Q Consensus 175 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~ia~P~Al~l~~~P~a~~~~~~~~ 233 (247)
..++++...+.++++++. ..+ ..+..+..+++++|||||.++ +|+++..+....
T Consensus 174 ~~~~l~~a~~~~~~~~~~-~~~---~~~~~~~~vlv~~~P~al~l~-~~~~~~~~~~~~ 227 (556)
T TIGR01525 174 VPAVLAIALLTFVVWLAL-GAL---GALYRALAVLVVACPCALGLA-TPVAILVAIGVA 227 (556)
T ss_pred HHHHHHHHHHHHHHHHHh-ccc---hHHHHHHHHHhhccccchheh-hHHHHHHHHHHH
Confidence 333333333333332222 111 445556678999999999999 999877666553
No 14
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=100.00 E-value=1.5e-34 Score=277.04 Aligned_cols=220 Identities=19% Similarity=0.201 Sum_probs=166.3
Q ss_pred hhhHHHHHHHHhhhc--CC---CCCchhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEE-CCeEE
Q 025861 3 VSANVIYLSGVGLAT--EG---WPEGMYDG---LGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTR-DGQRQ 73 (247)
Q Consensus 3 l~~a~~~s~~~~~~~--~~---~~~~~~~~---~~i~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r-~g~~~ 73 (247)
+++++++|+++++.. .+ +...||++ +.+++.++++.+++.+++++++++.++|.+..++..++++| ||+++
T Consensus 38 l~~~a~is~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~vl~g~~~e~~ae~ra~~~~~~L~~~~~~~~a~vlr~dg~~~ 117 (675)
T TIGR01497 38 VWVGSLLTTCITIAPASFGMPGNNLALFNAIITGILFITVLFANFAEAVAEGRGKAQADSLKGTKKTTFAKLLRDDGAID 117 (675)
T ss_pred HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeeCCEEE
Confidence 567889999887642 11 11247764 45555678899999999999999999999988766688875 89999
Q ss_pred EEeCCCcccCcEEEEcCCCeeeceEEEEeeCceEEeccccCCCCcceeecCCCC--EEEecceEeeceEEEEEEEecccc
Q 025861 74 KVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENP--FLLAGTKVQDGSVKMLVTTVGMRT 151 (247)
Q Consensus 74 ~v~~~~lv~GDii~v~~G~~iP~D~~v~~g~~~~vdes~lTGEs~pv~k~~~~~--~v~~Gt~~~~g~~~~~V~~~g~~T 151 (247)
+|++++|++||+|.+++||+||+||++++|+. .+|||++||||.|+.|++|+. .+|+||.|.+|++.++|+++|.+|
T Consensus 118 ~V~~~~L~~GDiV~V~~Gd~IPaDG~vieG~~-~VDESaLTGES~PV~K~~g~~~~~V~aGT~v~~G~~~i~Vt~~g~~S 196 (675)
T TIGR01497 118 KVPADQLKKGDIVLVEAGDVIPCDGEVIEGVA-SVDESAITGESAPVIKESGGDFASVTGGTRILSDWLVVECTANPGET 196 (675)
T ss_pred EEEHHHCCCCCEEEECCCCEEeeeEEEEEccE-EEEcccccCCCCceeecCCCCcceeecCcEEEeeEEEEEEEEecccC
Confidence 99999999999999999999999999999976 899999999999999999874 399999999999999999999999
Q ss_pred ccchhhhhhccccccchhHHHHHHHHHHHH---HHHHHHHhHhhccCCccHHHHHHHHhHhhhhhhheeeeccccc
Q 025861 152 EWGKLMETLNEGMFDSWLFVGILVLTVAFQ---IIIVEFLGALASTVPLSWHLWLLCILIGAVSMPIAVVIKCIPV 224 (247)
Q Consensus 152 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~il~ia~P~Al~l~~~P~ 224 (247)
++||+.+++++++.+|++.......+...+ .+++.+..+.+..+......+...+.+++++||||++.. +|+
T Consensus 197 ~lgri~~lve~a~~~ktplq~~l~~l~~~l~~v~li~~~~~~~~~~~~~~~~~~~~lvallV~aiP~aLg~l-~~a 271 (675)
T TIGR01497 197 FLDRMIALVEGAQRRKTPNEIALTILLIALTLVFLLVTATLWPFAAYGGNAISVTVLVALLVCLIPTTIGGL-LSA 271 (675)
T ss_pred HHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHhCchhhhhH-HHH
Confidence 999999999998888876543222111111 111111111110011111123333457899999999876 554
No 15
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=100.00 E-value=2.8e-34 Score=285.19 Aligned_cols=220 Identities=21% Similarity=0.306 Sum_probs=173.3
Q ss_pred hhhHHHHHHHHhhhcC---CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEECC------eEE
Q 025861 3 VSANVIYLSGVGLATE---GWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDG------QRQ 73 (247)
Q Consensus 3 l~~a~~~s~~~~~~~~---~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g------~~~ 73 (247)
+++++++|++++.+.. +...+|.+++.++++++++.+++.++++++++..++|.++.+. +++|+||| +++
T Consensus 87 L~~aa~ls~~~~~~~~~~~~~~~~~~~~~iI~~~v~l~~~i~~~qe~~a~~a~~~L~~l~~~-~~~V~Rdg~~~~~g~~~ 165 (903)
T PRK15122 87 LMVLAAISFFTDYWLPLRRGEETDLTGVIIILTMVLLSGLLRFWQEFRSNKAAEALKAMVRT-TATVLRRGHAGAEPVRR 165 (903)
T ss_pred HHHHHHHHHHHHHHhhccCCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-ceEEEECCccCCCCeEE
Confidence 5678888888875532 2224799999999999999999999999999999999998874 79999994 799
Q ss_pred EEeCCCcccCcEEEEcCCCeeeceEEEEeeCceEEeccccCCCCcceeecC--C--------------------CCEEEe
Q 025861 74 KVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICD--E--------------------NPFLLA 131 (247)
Q Consensus 74 ~v~~~~lv~GDii~v~~G~~iP~D~~v~~g~~~~vdes~lTGEs~pv~k~~--~--------------------~~~v~~ 131 (247)
+|+++||+|||+|.+++||+|||||++++|+++.||||+|||||.|+.|++ + +|++|+
T Consensus 166 ~I~~~eLv~GDiV~l~~Gd~IPaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~~~~~~~~~~~n~vfa 245 (903)
T PRK15122 166 EIPMRELVPGDIVHLSAGDMIPADVRLIESRDLFISQAVLTGEALPVEKYDTLGAVAGKSADALADDEGSLLDLPNICFM 245 (903)
T ss_pred EEEHHHCCCCCEEEECCCCEEeeeEEEEEcCceEEEccccCCCCcceeeeccccccccccccccccccCCcccccceEEe
Confidence 999999999999999999999999999999888899999999999999975 1 257999
Q ss_pred cceEeeceEEEEEEEeccccccchhhhhhccccccchhH-------HHHHHHHHHHHHHHHHHHhHhhccCCccHHH-HH
Q 025861 132 GTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWLF-------VGILVLTVAFQIIIVEFLGALASTVPLSWHL-WL 203 (247)
Q Consensus 132 Gt~~~~g~~~~~V~~~g~~T~~~~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~ 203 (247)
||.|.+|+++++|++||.+|.+||+.+++++.+ .++++ ...+..+...++.++.+++.+. ..+|.. +.
T Consensus 246 GT~V~~G~~~~~V~atG~~T~~gkI~~~v~~~~-~~t~l~~~l~~i~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~l~ 321 (903)
T PRK15122 246 GTNVVSGTATAVVVATGSRTYFGSLAKSIVGTR-AQTAFDRGVNSVSWLLIRFMLVMVPVVLLINGFT---KGDWLEALL 321 (903)
T ss_pred CCEEEeeeEEEEEEEeccccHhhHHHHHhcCCC-CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc---cCCHHHHHH
Confidence 999999999999999999999999999998733 33332 2333333333333333333222 123443 34
Q ss_pred HHHhHhhhhhhheeeecccccCCCC
Q 025861 204 LCILIGAVSMPIAVVIKCIPVKKSE 228 (247)
Q Consensus 204 ~~~~il~ia~P~Al~l~~~P~a~~~ 228 (247)
.++.+++.+|||+|.++ +|++...
T Consensus 322 ~aisl~V~~~Pe~Lp~~-vt~~La~ 345 (903)
T PRK15122 322 FALAVAVGLTPEMLPMI-VSSNLAK 345 (903)
T ss_pred HHHHHHHHHccchHHHH-HHHHHHH
Confidence 44567899999999998 7876554
No 16
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-35 Score=279.53 Aligned_cols=168 Identities=54% Similarity=0.852 Sum_probs=160.3
Q ss_pred hhhHHHHHHHHhhhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEECCeEEEEeCCCccc
Q 025861 3 VSANVIYLSGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVSIYDLVV 82 (247)
Q Consensus 3 l~~a~~~s~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g~~~~v~~~~lv~ 82 (247)
+.+||++|+.++++..++..+|||+++|++.++++.++.++++|+++++++.|++...+.+..|+|||+.++|+..|+++
T Consensus 161 L~vaAvvSl~lgi~~~g~~~GW~eG~aI~~sV~~VV~VtA~nDy~qe~QF~~L~~~k~~~k~~ViR~G~r~~isI~diVV 240 (1034)
T KOG0204|consen 161 LMVAAVVSLGLGIYTPGIEDGWIEGVAILLSVILVVLVTAVNDYRQELQFRKLQKEKRNIKFQVIRGGRRQQISIYDLVV 240 (1034)
T ss_pred HHHHHHHHHhhhhccCCCCcccccchhheeeEEEEEEEeecchhHHhhhhhhhhhhhhceEEEEEECCEEEEEEEeeeee
Confidence 56899999999999999999999999999999999999999999999999999988888899999999999999999999
Q ss_pred CcEEEEcCCCeeeceEEEEeeCceEEeccccCCCCcceeecC-CCCEEEecceEeeceEEEEEEEeccccccchhhhhhc
Q 025861 83 GDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICD-ENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLN 161 (247)
Q Consensus 83 GDii~v~~G~~iP~D~~v~~g~~~~vdes~lTGEs~pv~k~~-~~~~v~~Gt~~~~g~~~~~V~~~g~~T~~~~i~~~~~ 161 (247)
||++.++-||.+||||++++|+++.+|||++||||++++|.. .|+++++||.+.+|.+++.||.+|.+|.-|+++..+.
T Consensus 241 GDIv~lk~GDqvPADGvli~gn~L~iDESSlTGESd~v~k~~~~dPfLlSGTkv~eGsgkMlVTaVGmnt~wG~~m~~l~ 320 (1034)
T KOG0204|consen 241 GDIVQLKIGDQVPADGVLIQGNSLKIDESSLTGESDHVQKSLDKDPFLLSGTKVMEGSGKMLVTAVGMNTQWGIIMTLLG 320 (1034)
T ss_pred ccEEEeecCCccccceEEEeccceeEecccccCCCcceeccCCCCCeEeecceeecCcceEEEEEeeecchHhhHHHhhh
Confidence 999999999999999999999999999999999999999998 7899999999999999999999999999999999999
Q ss_pred cccccchhH
Q 025861 162 EGMFDSWLF 170 (247)
Q Consensus 162 ~~~~~~~~~ 170 (247)
+...+++++
T Consensus 321 ~~~~e~tpL 329 (1034)
T KOG0204|consen 321 AGGEEETPL 329 (1034)
T ss_pred cCCCcCCcH
Confidence 887666543
No 17
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=100.00 E-value=1.9e-34 Score=287.45 Aligned_cols=223 Identities=23% Similarity=0.296 Sum_probs=173.8
Q ss_pred hhhHHHHHHHHhhhcCC--CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEECCeEEEEeCCCc
Q 025861 3 VSANVIYLSGVGLATEG--WPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVSIYDL 80 (247)
Q Consensus 3 l~~a~~~s~~~~~~~~~--~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g~~~~v~~~~l 80 (247)
+++++++|++++....+ ...+|++++.+++.++++..+..++++++++.+++|.+..+ .+++|+|||++++++++||
T Consensus 13 L~~aa~ls~~~~~~~~~~~~~~~~~~~~~Il~vi~~~~~i~~~qe~~a~~~~~~L~~~~~-~~~~ViRdg~~~~I~~~~L 91 (917)
T TIGR01116 13 LLLAACVSFVLAWFEEGEETVTAFVEPFVILLILVANAIVGVWQERNAEKAIEALKEYES-EHAKVLRDGRWSVIKAKDL 91 (917)
T ss_pred HHHHHHHHHHHhcccccccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CceEEEECCEEEEEEHHHC
Confidence 56889999988766432 23579999999999999999999999999999999988766 4899999999999999999
Q ss_pred ccCcEEEEcCCCeeeceEEEEeeCceEEeccccCCCCcceeecCC------------CCEEEecceEeeceEEEEEEEec
Q 025861 81 VVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDE------------NPFLLAGTKVQDGSVKMLVTTVG 148 (247)
Q Consensus 81 v~GDii~v~~G~~iP~D~~v~~g~~~~vdes~lTGEs~pv~k~~~------------~~~v~~Gt~~~~g~~~~~V~~~g 148 (247)
+|||+|.+++||.|||||++++|+.+.||||+|||||.|+.|.++ ++++|+||.+.+|++.++|++||
T Consensus 92 v~GDiv~l~~Gd~IPaD~~ll~~~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~~~~n~l~~GT~v~~G~~~~~V~~tG 171 (917)
T TIGR01116 92 VPGDIVELAVGDKVPADIRVLSLKTLRVDQSILTGESVSVNKHTESVPDERAVNQDKKNMLFSGTLVVAGKARGVVVRTG 171 (917)
T ss_pred CCCCEEEECCCCEeeccEEEEEecceEEEcccccCCCCcccccccccCccccCcccccceeeeCCEEecceEEEEEEEeC
Confidence 999999999999999999999998779999999999999999865 26799999999999999999999
Q ss_pred cccccchhhhhhccccccchhHH-------HHHHHHHHHHHHHHHHHhHhh-ccC--CccH-HHHH----HHHhHhhhhh
Q 025861 149 MRTEWGKLMETLNEGMFDSWLFV-------GILVLTVAFQIIIVEFLGALA-STV--PLSW-HLWL----LCILIGAVSM 213 (247)
Q Consensus 149 ~~T~~~~i~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~-~~~--~~~~-~~~~----~~~~il~ia~ 213 (247)
.+|.+||+.+.+++.+.+++++. ..+..+..+.+++++++.... ... ...| ..+. ....+++.+|
T Consensus 172 ~~T~~gki~~~~~~~~~~~t~lq~~l~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~v~~i 251 (917)
T TIGR01116 172 MSTEIGKIRDEMRAAEQEDTPLQKKLDEFGELLSKVIGLICILVWVINIGHFNDPALGGGWIQGAIYYFKIAVALAVAAI 251 (917)
T ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhhhcc
Confidence 99999999999988776665432 222222222222222222111 000 1112 2222 2234678889
Q ss_pred hheeeecccccCCC
Q 025861 214 PIAVVIKCIPVKKS 227 (247)
Q Consensus 214 P~Al~l~~~P~a~~ 227 (247)
||+|.+. ++++..
T Consensus 252 P~~Lp~~-vti~l~ 264 (917)
T TIGR01116 252 PEGLPAV-ITTCLA 264 (917)
T ss_pred ccccHHH-HHHHHH
Confidence 9999998 776543
No 18
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=100.00 E-value=3.1e-34 Score=275.03 Aligned_cols=167 Identities=19% Similarity=0.312 Sum_probs=138.6
Q ss_pred hhhHHHHHHHHhhhcC--CC-CCchhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhchhCCCeEE-EEECCeEEE
Q 025861 3 VSANVIYLSGVGLATE--GW-PEGMYDGLGIILSI----LLVVMVTAISDYKQSLQFRDLDREKKKIFIQ-VTRDGQRQK 74 (247)
Q Consensus 3 l~~a~~~s~~~~~~~~--~~-~~~~~~~~~i~~~v----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-v~r~g~~~~ 74 (247)
+++++++|++++.+.. +. ...++++..+++.+ +++.+.|.+.+++++++.++|++..++.+++ |.|||++++
T Consensus 38 l~~aa~ls~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~g~~~E~~ae~ra~~~~~~L~~~~~~~~a~~v~rdg~~~~ 117 (673)
T PRK14010 38 VEVGMLLALGLTIYPDLFHQESVSRLYVFSIFIILLLTLVFANFSEALAEGRGKAQANALRQTQTEMKARRIKQDGSYEM 117 (673)
T ss_pred HHHHHHHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEEeCCEEEE
Confidence 4688899988876532 10 00113344444443 4455666666888889999999988754565 789999999
Q ss_pred EeCCCcccCcEEEEcCCCeeeceEEEEeeCceEEeccccCCCCcceeecCC---CCEEEecceEeeceEEEEEEEecccc
Q 025861 75 VSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDE---NPFLLAGTKVQDGSVKMLVTTVGMRT 151 (247)
Q Consensus 75 v~~~~lv~GDii~v~~G~~iP~D~~v~~g~~~~vdes~lTGEs~pv~k~~~---~~~v~~Gt~~~~g~~~~~V~~~g~~T 151 (247)
|++++|+|||+|.+++||+||+||++++|++ .+|||++||||.|+.|++| ++ +|+||.|.+|++.++|+++|.+|
T Consensus 118 I~a~eLv~GDiV~v~~Gd~IPaDG~vieG~~-~VDESaLTGES~PV~K~~g~d~~~-V~aGT~v~~G~~~i~Vta~g~~T 195 (673)
T PRK14010 118 IDASDLKKGHIVRVATGEQIPNDGKVIKGLA-TVDESAITGESAPVIKESGGDFDN-VIGGTSVASDWLEVEITSEPGHS 195 (673)
T ss_pred EEHHHcCCCCEEEECCCCcccCCeEEEEcce-EEecchhcCCCCceeccCCCccCe-eecCceeecceEEEEEEEecccC
Confidence 9999999999999999999999999999987 8999999999999999998 88 99999999999999999999999
Q ss_pred ccchhhhhhccccccchhHH
Q 025861 152 EWGKLMETLNEGMFDSWLFV 171 (247)
Q Consensus 152 ~~~~i~~~~~~~~~~~~~~~ 171 (247)
++||+.+++++++.+|+++.
T Consensus 196 ~lgki~~lve~a~~~ktp~e 215 (673)
T PRK14010 196 FLDKMIGLVEGATRKKTPNE 215 (673)
T ss_pred HHHHHHHHHhhccccCCHHH
Confidence 99999999999888887654
No 19
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=100.00 E-value=5.6e-34 Score=286.29 Aligned_cols=152 Identities=24% Similarity=0.327 Sum_probs=140.1
Q ss_pred hhhHHHHHHHHhhhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEECCeEEEEeCCCccc
Q 025861 3 VSANVIYLSGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVSIYDLVV 82 (247)
Q Consensus 3 l~~a~~~s~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g~~~~v~~~~lv~ 82 (247)
+++|+++|++++ +|.+++.++++++++..+..++++++++.+++|+++.+ .+++|+|||++++|+++||||
T Consensus 68 L~~aails~~~~--------~~~~~~iIl~vv~in~~i~~~QE~~aekal~aL~~l~~-~~~~ViRdg~~~~I~a~eLVp 138 (1053)
T TIGR01523 68 LIIAAAISFAMH--------DWIEGGVISAIIALNILIGFIQEYKAEKTMDSLKNLAS-PMAHVIRNGKSDAIDSHDLVP 138 (1053)
T ss_pred HHHHHHHHHHHh--------hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCC-CceEEEeCCeeeecCHhhCCC
Confidence 457777777765 89999999999999999999999999999999999876 489999999999999999999
Q ss_pred CcEEEEcCCCeeeceEEEEeeCceEEeccccCCCCcceeecCC--------------CCEEEecceEeeceEEEEEEEec
Q 025861 83 GDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDE--------------NPFLLAGTKVQDGSVKMLVTTVG 148 (247)
Q Consensus 83 GDii~v~~G~~iP~D~~v~~g~~~~vdes~lTGEs~pv~k~~~--------------~~~v~~Gt~~~~g~~~~~V~~~g 148 (247)
||+|.+++||+|||||++++++++.||||+|||||.|+.|.+. .|++|+||.+.+|++.++|++||
T Consensus 139 GDIv~L~~Gd~VPAD~rLi~~~~L~VDES~LTGES~pV~K~~~~~~~~~~~~~~~d~~n~lf~GT~V~~G~g~~vVvatG 218 (1053)
T TIGR01523 139 GDICLLKTGDTIPADLRLIETKNFDTDEALLTGESLPVIKDAHATFGKEEDTPIGDRINLAFSSSAVTKGRAKGICIATA 218 (1053)
T ss_pred CCEEEECCCCEeeccEEEEEeCceEEEchhhcCCCCceeccccccccccccCCcccCCCccccCceEEeeeEEEEEEEec
Confidence 9999999999999999999998899999999999999999642 25799999999999999999999
Q ss_pred cccccchhhhhhccc
Q 025861 149 MRTEWGKLMETLNEG 163 (247)
Q Consensus 149 ~~T~~~~i~~~~~~~ 163 (247)
.+|.+|||.+++.+.
T Consensus 219 ~~T~~GkIa~~~~~~ 233 (1053)
T TIGR01523 219 LNSEIGAIAAGLQGD 233 (1053)
T ss_pred CccHHHHHHHHHhhh
Confidence 999999999988643
No 20
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=100.00 E-value=4.8e-33 Score=279.32 Aligned_cols=221 Identities=21% Similarity=0.241 Sum_probs=172.5
Q ss_pred hhhHHHHHHHHhhhcC-----CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEECCeEEEEeC
Q 025861 3 VSANVIYLSGVGLATE-----GWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVSI 77 (247)
Q Consensus 3 l~~a~~~s~~~~~~~~-----~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g~~~~v~~ 77 (247)
+++++++|+++..+.. ....+|++++.++++++++..++.++++++++.++++.+..+ .+++|+|||++++|++
T Consensus 78 L~~aa~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i~~~i~~~qe~ka~~~l~~l~~~~~-~~~~ViRdg~~~~I~~ 156 (997)
T TIGR01106 78 LWIGAILCFLAYGIQASTEEEPQNDNLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVP-QQALVIRDGEKMSINA 156 (997)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CeeEEEECCEEEEeeH
Confidence 4567777766543321 122478999998888889999999999999999999988876 4899999999999999
Q ss_pred CCcccCcEEEEcCCCeeeceEEEEeeCceEEeccccCCCCcceeecCCC---------CEEEecceEeeceEEEEEEEec
Q 025861 78 YDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDEN---------PFLLAGTKVQDGSVKMLVTTVG 148 (247)
Q Consensus 78 ~~lv~GDii~v~~G~~iP~D~~v~~g~~~~vdes~lTGEs~pv~k~~~~---------~~v~~Gt~~~~g~~~~~V~~~g 148 (247)
+||+|||+|.+++||++||||++++|+++.||||+|||||.|+.|.+++ |++|+||.+.+|.+.++|++||
T Consensus 157 ~~lv~GDiv~l~~Gd~IPaD~~il~~~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~n~l~~Gt~v~~G~~~~~V~~tG 236 (997)
T TIGR01106 157 EQVVVGDLVEVKGGDRIPADLRIISAQGCKVDNSSLTGESEPQTRSPEFTHENPLETRNIAFFSTNCVEGTARGIVVNTG 236 (997)
T ss_pred HHCCCCCEEEECCCCEEeeeEEEEEccCcEEEccccCCCCCceeccCCCcccCccccCCeEEeccEeeeeeEEEEEEEcc
Confidence 9999999999999999999999999987789999999999999998764 4799999999999999999999
Q ss_pred cccccchhhhhhccccccchh-------HHHHHHHHHHHHHHHHHHHhHhhccCCccHHHH-HHHHhHhhhhhhheeeec
Q 025861 149 MRTEWGKLMETLNEGMFDSWL-------FVGILVLTVAFQIIIVEFLGALASTVPLSWHLW-LLCILIGAVSMPIAVVIK 220 (247)
Q Consensus 149 ~~T~~~~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~il~ia~P~Al~l~ 220 (247)
.+|.+||+.+.+++.+.++++ +...+..+.++..+++.+++.+. + ..|... ...+.+++++|||+|.++
T Consensus 237 ~~T~~g~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~i~v~v~~iP~~L~~~ 313 (997)
T TIGR01106 237 DRTVMGRIASLASGLENGKTPIAIEIEHFIHIITGVAVFLGVSFFILSLIL-G--YTWLEAVIFLIGIIVANVPEGLLAT 313 (997)
T ss_pred ccchhhHHHhhhhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c--CCHHHHHHHHHHHHhhcCCccchHH
Confidence 999999999998876655543 33333333333333322222221 1 234333 334457888899999888
Q ss_pred ccccCCCC
Q 025861 221 CIPVKKSE 228 (247)
Q Consensus 221 ~~P~a~~~ 228 (247)
+|++...
T Consensus 314 -v~i~l~~ 320 (997)
T TIGR01106 314 -VTVCLTL 320 (997)
T ss_pred -HHHHHHH
Confidence 8776554
No 21
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=100.00 E-value=4.9e-34 Score=242.67 Aligned_cols=197 Identities=28% Similarity=0.445 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEECCeEEEEeCCCcccCcEEEEcCCCeeeceEEEEe-eCceEE
Q 025861 30 IILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFIS-GYSLLI 108 (247)
Q Consensus 30 i~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g~~~~v~~~~lv~GDii~v~~G~~iP~D~~v~~-g~~~~v 108 (247)
++++++++.+++.++++++++..+++++..++..++|+|||++++++++||+|||+|.+++||.+||||++++ |.. .+
T Consensus 2 i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~~~i~~~~L~~GDiI~l~~g~~vPaD~~ll~~g~~-~v 80 (230)
T PF00122_consen 2 ILFLILLSNIIEIWQEYRSKKQLKKLNNLNPQKKVTVIRDGRWQKIPSSELVPGDIIILKAGDIVPADGILLESGSA-YV 80 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSEEEEEEETTEEEEEEGGGT-TTSEEEEETTEBESSEEEEEESSEE-EE
T ss_pred EEEEhHHHHHHHHHHHHHHHHHHHHHhccCCCccEEEEeccccccchHhhccceeeeecccccccccCccceecccc-cc
Confidence 4556778889999999999999999988877645999999999999999999999999999999999999999 766 89
Q ss_pred eccccCCCCcceeec-----CCCCEEEecceEeeceEEEEEEEeccccccchhhhhhccccccchhH-------HHHHHH
Q 025861 109 DESSLSGESEPMYIC-----DENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWLF-------VGILVL 176 (247)
Q Consensus 109 des~lTGEs~pv~k~-----~~~~~v~~Gt~~~~g~~~~~V~~~g~~T~~~~i~~~~~~~~~~~~~~-------~~~~~~ 176 (247)
|||.+|||+.|+.|. .++ ++|+||.+.+|.+.++|++||.+|..+++.+.+.+.+.+++++ ...+..
T Consensus 81 d~s~ltGes~pv~k~~~~~~~~~-~i~~Gs~v~~g~~~~~Vi~tG~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (230)
T PF00122_consen 81 DESALTGESEPVKKTPLPLNPGN-IIFAGSIVVSGWGIGVVIATGSDTKLGRILQLVSKSESKKSPLERKLNKIAKILII 159 (230)
T ss_dssp ECHHHHSBSSEEEESSSCCCTTT-EE-TTEEEEEEEEEEEEEE-GGGSHHHHHHHHHHTSCSS-THHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccc-hhhccccccccccccccceeeecccccccccccccccccchhhhhhhHHHHHHHHh
Confidence 999999999999999 665 5999999999999999999999999999999998877655443 223322
Q ss_pred HHHHHHHHHHHHhHhhccCCccHHHHHHHHhHhhhhhhheeeecccccCCCCc
Q 025861 177 TVAFQIIIVEFLGALASTVPLSWHLWLLCILIGAVSMPIAVVIKCIPVKKSEP 229 (247)
Q Consensus 177 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~ia~P~Al~l~~~P~a~~~~ 229 (247)
++++.+++..++++........+..+..++.+++.+|||++.++ +|++...+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~P~~l~~~-~~~~~~~~ 211 (230)
T PF00122_consen 160 IILAIAILVFIIWFFNDSGISFFKSFLFAISLLIVLIPCALPLA-LPLSLAIA 211 (230)
T ss_dssp HHHHHHHHHHHHCHTGSTTCHCCHHHHHHHHHHHHHS-TTHHHH-HHHHHHHH
T ss_pred cccccchhhhccceecccccccccccccccceeeeecccceeeh-HHHHHHHH
Confidence 33333332222222211111123455555678999999999999 88865443
No 22
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=99.98 E-value=4e-33 Score=263.81 Aligned_cols=215 Identities=29% Similarity=0.379 Sum_probs=173.3
Q ss_pred hhhHHHHHHHHhhhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEECCeEEEEeCCCccc
Q 025861 3 VSANVIYLSGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVSIYDLVV 82 (247)
Q Consensus 3 l~~a~~~s~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g~~~~v~~~~lv~ 82 (247)
|++||++|+++. .|.|+..|.+.++++..+..++||++++++.+|+++.++ .++|+|+|+.+.++++||||
T Consensus 65 LL~sA~ISfvl~--------~~~e~~vI~liiv~nvtVG~~QEy~aEkalEaLk~l~p~-~~~V~R~gk~~~i~A~eLVP 135 (972)
T KOG0202|consen 65 LLLSAAISFVLA--------DFDEPFVITLIIVINVTVGFVQEYNAEKALEALKELVPP-MAHVLRSGKLQHILARELVP 135 (972)
T ss_pred HHHHHHHHHHHH--------hcccceeeeeeeeeeeeeeeeeehhhHHHHHHHHhcCCc-cceEEecCcccceehhccCC
Confidence 678999999998 667888999999999999999999999999999999984 99999999999999999999
Q ss_pred CcEEEEcCCCeeeceEEEEeeCceEEeccccCCCCcceeecCC-------------CCEEEecceEeeceEEEEEEEecc
Q 025861 83 GDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDE-------------NPFLLAGTKVQDGSVKMLVTTVGM 149 (247)
Q Consensus 83 GDii~v~~G~~iP~D~~v~~g~~~~vdes~lTGEs~pv~k~~~-------------~~~v~~Gt~~~~g~~~~~V~~~g~ 149 (247)
||+|.++-||+||||.++++..++.+|||.|||||.|+.|... .|++|+||.+..|+++++|+.||.
T Consensus 136 GDiV~l~vGDkVPADlRl~e~~sl~iDeS~LTGEs~pv~K~t~~v~~~~~~~~~dk~NiaFsGT~V~~G~a~GIVi~TG~ 215 (972)
T KOG0202|consen 136 GDIVELKVGDKIPADLRLIEAKSLRIDESSLTGESEPVSKDTDAVPKDENADVQDKKNIAFSGTLVVAGRAKGIVIGTGL 215 (972)
T ss_pred CCEEEEecCCccccceeEEeeeeeeeecccccCCcccccccCccccCCCCCccccceeeEeecceeecCceeEEEEeccc
Confidence 9999999999999999999998899999999999999999531 358999999999999999999999
Q ss_pred ccccchhhhhhccccccchhHHH-------HHHHHHHHHHHHHHHH--hHhhccCCc---cHHHHHHHHhHhhhhhhhee
Q 025861 150 RTEWGKLMETLNEGMFDSWLFVG-------ILVLTVAFQIIIVEFL--GALASTVPL---SWHLWLLCILIGAVSMPIAV 217 (247)
Q Consensus 150 ~T~~~~i~~~~~~~~~~~~~~~~-------~~~~~~~~~~~i~~~~--~~~~~~~~~---~~~~~~~~~~il~ia~P~Al 217 (247)
+|.+|++.+.+++.+..|++..+ .+...+.+.++.++++ +++. .|- +|..-...++...+|..+|.
T Consensus 216 nTeiG~I~~~m~~~e~~kTPLqk~ld~~G~qLs~~is~i~v~v~~~nig~f~--~p~~~g~~fk~~~~~f~IaVsLAVAA 293 (972)
T KOG0202|consen 216 NTEIGKIFKMMQATESPKTPLQKKLDEFGKQLSKVISFICVGVWLLNIGHFL--DPVHGGSWFKGALYYFKIAVSLAVAA 293 (972)
T ss_pred cchHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHheehhhhHHHhhhhhhc--cccccccchhchhhhhhHHHHHHHHh
Confidence 99999999999998887876543 3332333333333333 3322 111 12111223344577778888
Q ss_pred eecccccCCCC
Q 025861 218 VIKCIPVKKSE 228 (247)
Q Consensus 218 ~l~~~P~a~~~ 228 (247)
+++++|+-.+.
T Consensus 294 IPEGLPaVvT~ 304 (972)
T KOG0202|consen 294 IPEGLPAVVTT 304 (972)
T ss_pred ccCCCcchhhh
Confidence 88888865443
No 23
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.97 E-value=5.2e-31 Score=262.23 Aligned_cols=162 Identities=28% Similarity=0.392 Sum_probs=139.3
Q ss_pred hhhHHHHHHHHhhhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEECCeEEEEeCCCccc
Q 025861 3 VSANVIYLSGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVSIYDLVV 82 (247)
Q Consensus 3 l~~a~~~s~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g~~~~v~~~~lv~ 82 (247)
+..++++|.+++.+.... .+...+...++++..+..++++++++.+++++++.+ .+++|+|||++++++++||+|
T Consensus 86 L~~~a~~s~~~~~~~~~~----~~~~~I~~~i~~n~~~g~~qe~~a~~~l~~lk~~~~-~~~~V~R~g~~~~i~a~eLVp 160 (917)
T COG0474 86 LLVAALLSAFVGDWVDAG----VDAIVILLVVVINALLGFVQEYRAEKALEALKKMSS-PKAKVLRDGKFVEIPASELVP 160 (917)
T ss_pred HHHHHHHHHHhhcccccC----cceeeehHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CceEEEeCCcEEEecHHHCCC
Confidence 345666676666221110 445567777788889999999999999999999885 589999999999999999999
Q ss_pred CcEEEEcCCCeeeceEEEEeeCceEEeccccCCCCcceeecC-------------CCCEEEecceEeeceEEEEEEEecc
Q 025861 83 GDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICD-------------ENPFLLAGTKVQDGSVKMLVTTVGM 149 (247)
Q Consensus 83 GDii~v~~G~~iP~D~~v~~g~~~~vdes~lTGEs~pv~k~~-------------~~~~v~~Gt~~~~g~~~~~V~~~g~ 149 (247)
||+|.+++||+||||+++++++++.||||+|||||.|+.|.+ .+|++|+||.+.+|++.+.|++||.
T Consensus 161 GDiV~l~~gd~vPAD~rLl~~~~l~VdEs~LTGES~pv~K~~~~~~~~~~~~~~d~~n~l~sGt~V~~G~~~giVvaTG~ 240 (917)
T COG0474 161 GDIVLLEAGDVVPADLRLLESSDLEVDESALTGESLPVEKQALPLTKSDAPLGLDRDNMLFSGTTVVSGRAKGIVVATGF 240 (917)
T ss_pred CcEEEECCCCccccceEEEEecCceEEcccccCCCcchhccccccccccccccCCccceEEeCCEEEcceEEEEEEEEcC
Confidence 999999999999999999999988999999999999999973 3678999999999999999999999
Q ss_pred ccccchhhhhhccccccchh
Q 025861 150 RTEWGKLMETLNEGMFDSWL 169 (247)
Q Consensus 150 ~T~~~~i~~~~~~~~~~~~~ 169 (247)
+|.+|++.+.+......+++
T Consensus 241 ~T~~G~ia~~~~~~~~~~t~ 260 (917)
T COG0474 241 ETEFGKIARLLPTKKEVKTP 260 (917)
T ss_pred ccHHHHHHHhhccccccCCc
Confidence 99999999999988444443
No 24
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=99.97 E-value=3.1e-30 Score=260.38 Aligned_cols=201 Identities=22% Similarity=0.316 Sum_probs=152.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEECCeEEEEeCCCcccCcEEEEc--CCCeeeceEEE
Q 025861 23 GMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVSIYDLVVGDIVHLS--IGDQVPADGIF 100 (247)
Q Consensus 23 ~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g~~~~v~~~~lv~GDii~v~--~G~~iP~D~~v 100 (247)
+|++++.++++++++..+..++++++.++++++... +..++|+|||+|++|+++||+|||+|.++ +|+.+||||++
T Consensus 192 ~~~~~~~i~~i~~~~~~~~~~~~~k~~~~L~~~~~~--~~~v~V~Rdg~~~~I~s~eLvpGDiv~l~~~~g~~iPaD~~l 269 (1054)
T TIGR01657 192 YYYYSLCIVFMSSTSISLSVYQIRKQMQRLRDMVHK--PQSVIVIRNGKWVTIASDELVPGDIVSIPRPEEKTMPCDSVL 269 (1054)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CeeEEEEECCEEEEEEcccCCCCCEEEEecCCCCEecceEEE
Confidence 688999999988888888888888888877776542 35899999999999999999999999999 99999999999
Q ss_pred EeeCceEEeccccCCCCcceeecCC-----------------CCEEEecceEee-------ceEEEEEEEeccccccchh
Q 025861 101 ISGYSLLIDESSLSGESEPMYICDE-----------------NPFLLAGTKVQD-------GSVKMLVTTVGMRTEWGKL 156 (247)
Q Consensus 101 ~~g~~~~vdes~lTGEs~pv~k~~~-----------------~~~v~~Gt~~~~-------g~~~~~V~~~g~~T~~~~i 156 (247)
++|+. .||||+|||||.|+.|.+. .+++|+||.+.+ |.+.++|++||.+|..||+
T Consensus 270 l~g~~-~VdES~LTGES~Pv~K~~~~~~~~~~~~~~~~~~~~~~~lf~GT~v~~~~~~~g~g~~~~vV~~TG~~T~~G~i 348 (1054)
T TIGR01657 270 LSGSC-IVNESMLTGESVPVLKFPIPDNGDDDEDLFLYETSKKHVLFGGTKILQIRPYPGDTGCLAIVVRTGFSTSKGQL 348 (1054)
T ss_pred EeCcE-EEecccccCCccceecccCCccccccccccccccccceEEEcCCEEEEEecCCCCCcEEEEEEeCCccccchHH
Confidence 99975 8999999999999999752 247999999985 7899999999999999999
Q ss_pred hhhhccccccchhHHHH---HHHHHHHHHH---HHHHHhHhhccCCccHHHHHH-HHhHhhhhhhheeeecccccCCCCc
Q 025861 157 METLNEGMFDSWLFVGI---LVLTVAFQII---IVEFLGALASTVPLSWHLWLL-CILIGAVSMPIAVVIKCIPVKKSEP 229 (247)
Q Consensus 157 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~---i~~~~~~~~~~~~~~~~~~~~-~~~il~ia~P~Al~l~~~P~a~~~~ 229 (247)
.+.+...+..++++.+. +...+.++++ ++.+...+.. ...+...+. ++.++++++|++|-++ ++++...+
T Consensus 349 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~a~i~~i~~~~~~~~~--~~~~~~~~l~~l~iiv~~vP~~LP~~-~ti~l~~~ 425 (1054)
T TIGR01657 349 VRSILYPKPRVFKFYKDSFKFILFLAVLALIGFIYTIIELIKD--GRPLGKIILRSLDIITIVVPPALPAE-LSIGINNS 425 (1054)
T ss_pred HHHhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHhhcCchHHHH-HHHHHHHH
Confidence 99998766555443221 1111111111 1111111111 223444444 4457889999999998 76654443
No 25
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.6e-31 Score=245.52 Aligned_cols=155 Identities=26% Similarity=0.387 Sum_probs=142.7
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEECCeEEEEeCCCcccCcEEEEcCCCeeec
Q 025861 17 TEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPA 96 (247)
Q Consensus 17 ~~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g~~~~v~~~~lv~GDii~v~~G~~iP~ 96 (247)
.++.+.+|.|...|..+++++..+++++|+++.....+|++... ++++|+|||+|.++++++|||||++.++.||.+||
T Consensus 90 g~~~~~DW~DF~gI~~LLliNsti~FveE~nAGn~aa~L~a~LA-~KakVlRDGkw~E~eAs~lVPGDIlsik~GdIiPa 168 (942)
T KOG0205|consen 90 GGGRPPDWQDFVGICCLLLINSTISFIEENNAGNAAAALMAGLA-PKAKVLRDGKWSEQEASILVPGDILSIKLGDIIPA 168 (942)
T ss_pred CCCCCcchhhhhhhheeeeecceeeeeeccccchHHHHHHhccC-cccEEeecCeeeeeeccccccCceeeeccCCEecC
Confidence 45667899999999999999999999999999999999987765 48999999999999999999999999999999999
Q ss_pred eEEEEeeCceEEeccccCCCCcceeecCCCCEEEecceEeeceEEEEEEEeccccccchhhhhhccccccchhHHHHH
Q 025861 97 DGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWLFVGIL 174 (247)
Q Consensus 97 D~~v~~g~~~~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~g~~~~~V~~~g~~T~~~~i~~~~~~~~~~~~~~~~~~ 174 (247)
|+++++|+.+++|+|.|||||.|+.|.+||. +|+|+.|.+|++.++|++||.+|+.||-++++...+ +...|...+
T Consensus 169 DaRLl~gD~LkiDQSAlTGESLpvtKh~gd~-vfSgSTcKqGE~eaVViATg~~TF~GkAA~LVdst~-~~GHFqkVL 244 (942)
T KOG0205|consen 169 DARLLEGDPLKIDQSALTGESLPVTKHPGDE-VFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTN-QVGHFQKVL 244 (942)
T ss_pred ccceecCCccccchhhhcCCccccccCCCCc-eecccccccceEEEEEEEeccceeehhhHHhhcCCC-CcccHHHHH
Confidence 9999999999999999999999999999999 999999999999999999999999999999999843 345555444
No 26
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=99.97 E-value=2.9e-30 Score=242.87 Aligned_cols=194 Identities=27% Similarity=0.385 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--hhCCCeEEEEECCeEEEEeCCCcccCcEEEEcCCCeeeceEEEEeeCceEEe
Q 025861 32 LSILLVVMVTAISDYKQSLQFRDLDR--EKKKIFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLID 109 (247)
Q Consensus 32 ~~v~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~v~r~g~~~~v~~~~lv~GDii~v~~G~~iP~D~~v~~g~~~~vd 109 (247)
++++++.+++.+.+++.++..+++.+ ..+ .+++++|+| +++|++++|+|||+|.+++||.+||||++++|+. .||
T Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~v~r~g-~~~V~~~~l~~GDiv~v~~G~~iP~Dg~vl~g~~-~vd 80 (499)
T TIGR01494 4 ILVLLFALVEVAAKRAAEDAIRSLKDLLVNP-ETVTVLRNG-WKEIPASDLVPGDIVLVKSGEIVPADGVLLSGSC-FVD 80 (499)
T ss_pred EhhHHHHHHHHHHHHHHHHHHHHHhhccCCC-CeEEEEECC-eEEEEHHHCCCCCEEEECCCCEeeeeEEEEEccE-EEE
Confidence 34567889999999999999999988 444 589999999 9999999999999999999999999999999987 799
Q ss_pred ccccCCCCcceeecCCCCEEEecceEeeceEEEEEEEeccccccchhhhhhccccccchh-------HH-HHHHHHHHHH
Q 025861 110 ESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWL-------FV-GILVLTVAFQ 181 (247)
Q Consensus 110 es~lTGEs~pv~k~~~~~~v~~Gt~~~~g~~~~~V~~~g~~T~~~~i~~~~~~~~~~~~~-------~~-~~~~~~~~~~ 181 (247)
||+|||||.|+.|++++. +++|+.+.+|...++|+++|.+|..+++.+.+++++..+++ +. ..++.+++++
T Consensus 81 es~LTGEs~pv~k~~g~~-v~~gs~~~~G~~~~~v~~~~~~s~~~~i~~~v~~~~~~k~~~~~~~~~~~~~~~~~~~~~l 159 (499)
T TIGR01494 81 ESNLTGESVPVLKTAGDA-VFAGTYVFNGTLIVVVSATGPNTFGGKIAVVVYTGFETKTPLQPKLDRLSDIIFILFVLLI 159 (499)
T ss_pred cccccCCCCCeeeccCCc-cccCcEEeccEEEEEEEEeccccHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 99999999999999999999999999999999887764432 22 2222222222
Q ss_pred HHHHHHHhHhhccCCc-cHHHHHHH-HhHhhhhhhheeeecccccCCCCccc
Q 025861 182 IIIVEFLGALASTVPL-SWHLWLLC-ILIGAVSMPIAVVIKCIPVKKSEPKL 231 (247)
Q Consensus 182 ~~i~~~~~~~~~~~~~-~~~~~~~~-~~il~ia~P~Al~l~~~P~a~~~~~~ 231 (247)
.++ .++.++...... .|..++.+ +.+++++|||||.++ +|++...+..
T Consensus 160 a~~-~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~P~aL~~~-~~~~~~~~~~ 209 (499)
T TIGR01494 160 ALA-VFLFWAIGLWDPNSIFKIFLRALILLVIAIPIALPLA-VTIALAVGDA 209 (499)
T ss_pred HHH-HHHHHHHHHcccccHHHHHHHHHHHHHHhcCCcHHHH-HHHHHHHHHH
Confidence 222 222222221111 24444444 468999999999999 9987665543
No 27
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.94 E-value=8.4e-26 Score=216.82 Aligned_cols=193 Identities=25% Similarity=0.378 Sum_probs=148.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEECCeEEEEeCCCcccCcEEEEcC-CCeeeceEEE
Q 025861 22 EGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVSIYDLVVGDIVHLSI-GDQVPADGIF 100 (247)
Q Consensus 22 ~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g~~~~v~~~~lv~GDii~v~~-G~~iP~D~~v 100 (247)
.+||.+.+|++..+.+.+++.+..++++++++++.+.. ..++|+|||.|++|+++||||||++.+.+ |...|||+++
T Consensus 212 ~Y~~YA~cI~iisv~Si~~sv~e~r~qs~rlr~mv~~~--~~V~V~R~g~~~ti~S~eLVPGDil~i~~~~~~~PcDa~L 289 (1140)
T KOG0208|consen 212 SYYYYAFCIVIISVYSIVLSVYETRKQSIRLRSMVKFT--CPVTVIRDGFWETVDSSELVPGDILYIPPPGKIMPCDALL 289 (1140)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--ceEEEEECCEEEEEeccccccccEEEECCCCeEeecceEE
Confidence 46777778887777788888888888888888886664 47999999999999999999999999998 8999999999
Q ss_pred EeeCceEEeccccCCCCcceeecCC------------------CCEEEecceEee------ceEEEEEEEeccccccchh
Q 025861 101 ISGYSLLIDESSLSGESEPMYICDE------------------NPFLLAGTKVQD------GSVKMLVTTVGMRTEWGKL 156 (247)
Q Consensus 101 ~~g~~~~vdes~lTGEs~pv~k~~~------------------~~~v~~Gt~~~~------g~~~~~V~~~g~~T~~~~i 156 (247)
++|++ .+|||+|||||.|+.|.+- .+++|+||.+++ +.+.+.|+|||.+|..||+
T Consensus 290 i~g~c-ivNEsmLTGESVPv~K~~l~~~~~~~~~~~~~~~~~~rh~lfcGT~vlq~r~~~g~~v~a~V~RTGF~T~KGqL 368 (1140)
T KOG0208|consen 290 ISGDC-IVNESMLTGESVPVTKTPLPMGTDSLDSITISMSTNSRHTLFCGTKVLQARAYLGGPVLAMVLRTGFSTTKGQL 368 (1140)
T ss_pred EeCcE-EeecccccCCcccccccCCccccccCcCeeechhhcCcceeeccceEEEeecCCCCceEEEEEeccccccccHH
Confidence 99998 6999999999999999863 247999999974 6789999999999999999
Q ss_pred hhhhccccccchhHHHHHHHHHHHHHHHHHHHhHhhcc-----CCccHHHHHHHHh-Hhhhhhhheee
Q 025861 157 METLNEGMFDSWLFVGILVLTVAFQIIIVEFLGALAST-----VPLSWHLWLLCIL-IGAVSMPIAVV 218 (247)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~-il~ia~P~Al~ 218 (247)
.+.+..++....+|.+-...++.++. ++.++++++.. .....+..+.+.+ ++.+..|.||-
T Consensus 369 VRsilyPkP~~fkfyrds~~fi~~l~-~ia~~gfiy~~i~l~~~g~~~~~iiirsLDliTi~VPPALP 435 (1140)
T KOG0208|consen 369 VRSILYPKPVNFKFYRDSFKFILFLV-IIALIGFIYTAIVLNLLGVPLKTIIIRSLDLITIVVPPALP 435 (1140)
T ss_pred HHhhcCCCCcccHHHHHHHHHHHHHH-HHHHHHHHHHhHhHHHcCCCHHHHhhhhhcEEEEecCCCch
Confidence 99999988877776543322222111 11222222211 1224455666665 67888887753
No 28
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=99.90 E-value=9.2e-25 Score=207.12 Aligned_cols=220 Identities=24% Similarity=0.256 Sum_probs=162.9
Q ss_pred hhhHHHHHHHHhhhcCC-----CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEECCeEEEEeC
Q 025861 3 VSANVIYLSGVGLATEG-----WPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVSI 77 (247)
Q Consensus 3 l~~a~~~s~~~~~~~~~-----~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g~~~~v~~ 77 (247)
++++++.+++.+.+... ...+.|.++.+...+++..+...+++.+..+-+++.+++.| +.++|+|||+...+.+
T Consensus 100 l~~~a~l~~~~y~~~~s~~~~~~~~nly~giiL~~vv~vtg~~~~~qe~ks~~im~sF~~l~P-~~~~ViRdg~k~~i~~ 178 (1019)
T KOG0203|consen 100 LWIGAILCFVAYGIQASTEDDPSDDNLYLGIVLAAVVIVTGLFSYYQEAKSSKIMDSFKNLVP-QQALVIRDGEKMTINA 178 (1019)
T ss_pred HHHHHHHHHHHHhhhcccCCCCCCcceEEEEEEEEEEEEEecCCCccchhhHHHHHHHhccch-hhheeeecceeEEech
Confidence 56788888766554221 13345566555555666677888899999998899988888 5899999999999999
Q ss_pred CCcccCcEEEEcCCCeeeceEEEEeeCceEEeccccCCCCcceeecCC---------CCEEEecceEeeceEEEEEEEec
Q 025861 78 YDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDE---------NPFLLAGTKVQDGSVKMLVTTVG 148 (247)
Q Consensus 78 ~~lv~GDii~v~~G~~iP~D~~v~~g~~~~vdes~lTGEs~pv~k~~~---------~~~v~~Gt~~~~g~~~~~V~~~g 148 (247)
+|+|+||++.++-||++|||.+++++..+.+|+|++||||+|..+.+. +|+-|.+|.+++|.+++.|.+||
T Consensus 179 eelVvGD~v~vk~GdrVPADiRiis~~g~~vdnsslTGesEP~~~~~~~t~~~~~Et~Ni~f~st~~veG~~~givi~tG 258 (1019)
T KOG0203|consen 179 EELVVGDLVEVKGGDRVPADIRIISATGCKVDNSSLTGESEPQTRSPEFTHENPLETRNIAFFSTNCVEGTGRGIVIATG 258 (1019)
T ss_pred hhcccccceeeccCCcccceeEEEEecceeEeccccccccCCccCCccccccCchhheeeeeeeeEEecceEEEEEEecC
Confidence 999999999999999999999999999999999999999999998763 46899999999999999999999
Q ss_pred cccccchhhhhhccccccchh-------HHHHHHHHHHHHHHHHHHHhHhhccCCccHHHHHHHHhHhhhhhhheeeecc
Q 025861 149 MRTEWGKLMETLNEGMFDSWL-------FVGILVLTVAFQIIIVEFLGALASTVPLSWHLWLLCILIGAVSMPIAVVIKC 221 (247)
Q Consensus 149 ~~T~~~~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~ia~P~Al~l~~ 221 (247)
.+|.+|++..+...-+..+++ |..++.. +++...+.+|...+..+ ..|+.++.. .++.-+|.++++
T Consensus 259 d~Tv~G~ia~l~~~~~~~~t~~~~ei~~fi~~it~-vAi~~~i~fF~~~~~~g-----y~~l~avv~-~i~iivAnvPeG 331 (1019)
T KOG0203|consen 259 DRTVMGRIASLASGLEDGKTPIAKEIEHFIHIITG-VAIFLGISFFILALILG-----YEWLRAVVF-LIGIIVANVPEG 331 (1019)
T ss_pred CceEEeehhhhhccCCCCCCcchhhhhchHHHHHH-HHHHHHHHHHHHHHhhc-----chhHHHhhh-hheeEEecCcCC
Confidence 999999999988765555544 3333322 22222222332222111 223333333 666677777777
Q ss_pred cccCCCCcc
Q 025861 222 IPVKKSEPK 230 (247)
Q Consensus 222 ~P~a~~~~~ 230 (247)
+|.-.+-.+
T Consensus 332 L~~tvTv~L 340 (1019)
T KOG0203|consen 332 LLATVTVCL 340 (1019)
T ss_pred ccceehhhH
Confidence 776554433
No 29
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=99.90 E-value=2.7e-23 Score=188.75 Aligned_cols=147 Identities=22% Similarity=0.318 Sum_probs=130.7
Q ss_pred chhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEEC-CeEEEEeCCCcccCcEEEEcCCCeeeceEE
Q 025861 23 GMYDGLGI--ILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRD-GQRQKVSIYDLVVGDIVHLSIGDQVPADGI 99 (247)
Q Consensus 23 ~~~~~~~i--~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~-g~~~~v~~~~lv~GDii~v~~G~~iP~D~~ 99 (247)
.|+-.+.+ ++.+++..+.|++.|.+.+.+..+|++.+.+..++.+++ |+++.+++.+|+.||+|.++.||.||+||.
T Consensus 63 ~f~~~i~~~L~fTVlFANfaEa~AEGrgKAqAdsLr~~~~~~~A~~l~~~g~~~~v~st~Lk~gdiV~V~age~IP~DGe 142 (681)
T COG2216 63 LFNLAITIILWFTVLFANFAEAVAEGRGKAQADSLRKTKTETIARLLRADGSIEMVPATELKKGDIVLVEAGEIIPSDGE 142 (681)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhcCCCCeeeccccccccCCEEEEecCCCccCCCe
Confidence 34444433 344788889999999998888888888877667777776 899999999999999999999999999999
Q ss_pred EEeeCceEEeccccCCCCcceeecCC---CCEEEecceEeeceEEEEEEEeccccccchhhhhhccccccchhHH
Q 025861 100 FISGYSLLIDESSLSGESEPMYICDE---NPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWLFV 171 (247)
Q Consensus 100 v~~g~~~~vdes~lTGEs~pv~k~~~---~~~v~~Gt~~~~g~~~~~V~~~g~~T~~~~i~~~~~~~~~~~~~~~ 171 (247)
+++|.+ +||||.+||||.||-|..| +. +-.||.+++...+++++....+|++.|++.+++.++.+|++-.
T Consensus 143 VIeG~a-sVdESAITGESaPViresGgD~ss-VtGgT~v~SD~l~irita~pG~sFlDrMI~LVEgA~R~KTPNE 215 (681)
T COG2216 143 VIEGVA-SVDESAITGESAPVIRESGGDFSS-VTGGTRVLSDWLKIRITANPGETFLDRMIALVEGAERQKTPNE 215 (681)
T ss_pred EEeeee-ecchhhccCCCcceeeccCCCccc-ccCCcEEeeeeEEEEEEcCCCccHHHHHHHHhhchhccCChhH
Confidence 999999 8999999999999999998 55 9999999999999999999999999999999999999998754
No 30
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=99.88 E-value=6.6e-22 Score=200.40 Aligned_cols=120 Identities=23% Similarity=0.317 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhCCCeEEEEEC-CeEEEEeCCCcccCcEEEEcCCCeeeceEEEEeeCc----eEEecc
Q 025861 37 VVMVTAISDYKQSLQFRDLDREKKKIFIQVTRD-GQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYS----LLIDES 111 (247)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~-g~~~~v~~~~lv~GDii~v~~G~~iP~D~~v~~g~~----~~vdes 111 (247)
....+.+.++++.++. +..++..++|+|+ |++++++++|++|||+|.+++||.+|||+++++++. +.||||
T Consensus 64 ~~~~~~~ed~~r~~~d----~~~n~~~~~v~~~~~~~~~i~~~~l~~GDiv~l~~g~~iPaD~~ll~ss~~~g~~~v~~s 139 (1057)
T TIGR01652 64 TAIKEAIEDIRRRRRD----KEVNNRLTEVLEGHGQFVEIPWKDLRVGDIVKVKKDERIPADLLLLSSSEPDGVCYVETA 139 (1057)
T ss_pred HHHHHHHHHHHHHHhH----HHHhCcEEEEECCCCcEEEeeeecccCCCEEEEcCCCcccceEEEEeccCCCceEEEEee
Confidence 3344444444444443 3334468999997 799999999999999999999999999999998543 589999
Q ss_pred ccCCCCcceeecCC-----------------------------------------------CCEEEecceEee-ceEEEE
Q 025861 112 SLSGESEPMYICDE-----------------------------------------------NPFLLAGTKVQD-GSVKML 143 (247)
Q Consensus 112 ~lTGEs~pv~k~~~-----------------------------------------------~~~v~~Gt~~~~-g~~~~~ 143 (247)
.||||+.|+.|++. +|++++||.+.+ |.+.+.
T Consensus 140 ~l~GEs~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~F~G~~~~~~~~~~~l~~~N~l~rGs~l~nt~~~~gv 219 (1057)
T TIGR01652 140 NLDGETNLKLRQALEETQKMLDEDDIKNFSGEIECEQPNASLYSFQGNMTINGDRQYPLSPDNILLRGCTLRNTDWVIGV 219 (1057)
T ss_pred ccCCeecceEeecchhhhccCChhhHhhceEEEEEcCCCCcceEEEEEEEECCCCcccCCHHHhHhcCCEecCCCeEEEE
Confidence 99999999988631 146888999988 999999
Q ss_pred EEEeccccccchhhhhh
Q 025861 144 VTTVGMRTEWGKLMETL 160 (247)
Q Consensus 144 V~~~g~~T~~~~i~~~~ 160 (247)
|++||.+|.+++..+..
T Consensus 220 VvyTG~~Tk~~~n~~~~ 236 (1057)
T TIGR01652 220 VVYTGHDTKLMRNATQA 236 (1057)
T ss_pred EEEEchhhhhhhcCCCC
Confidence 99999999988765443
No 31
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=99.85 E-value=2.6e-21 Score=183.27 Aligned_cols=210 Identities=21% Similarity=0.281 Sum_probs=153.1
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhCC-CeEEEEECCeEEEEeCCCcccCcEEEEcC---CCeeece
Q 025861 22 EGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKK-IFIQVTRDGQRQKVSIYDLVVGDIVHLSI---GDQVPAD 97 (247)
Q Consensus 22 ~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~r~g~~~~v~~~~lv~GDii~v~~---G~~iP~D 97 (247)
+.||.++..++++ ..+|+-.-+++.+++.+++++.++ ..+.|+|+++|+.+.++||.|||+|.+.. ...+|||
T Consensus 215 eyWYySlFtLfMl---i~fE~tlV~Qrm~~lse~R~Mg~kpy~I~v~R~kKW~~l~seeLlPgDvVSI~r~~ed~~vPCD 291 (1160)
T KOG0209|consen 215 EYWYYSLFTLFML---IAFEATLVKQRMRTLSEFRTMGNKPYTINVYRNKKWVKLMSEELLPGDVVSIGRGAEDSHVPCD 291 (1160)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCcceeccccccCCCceEEeccCcccCcCCce
Confidence 3688876666543 445777777888888888888653 57899999999999999999999999987 5679999
Q ss_pred EEEEeeCceEEeccccCCCCcceeecCC----------------CCEEEecceEe-------------eceEEEEEEEec
Q 025861 98 GIFISGYSLLIDESSLSGESEPMYICDE----------------NPFLLAGTKVQ-------------DGSVKMLVTTVG 148 (247)
Q Consensus 98 ~~v~~g~~~~vdes~lTGEs~pv~k~~~----------------~~~v~~Gt~~~-------------~g~~~~~V~~~g 148 (247)
..++.|++ .|||++|||||.|..|.+- .+++|+||.++ +|.+.+.|++||
T Consensus 292 llLL~Gsc-iVnEaMLtGESvPl~KE~Ie~~~~d~~ld~~~d~k~hVlfGGTkivQht~p~~~slk~pDggc~a~VlrTG 370 (1160)
T KOG0209|consen 292 LLLLRGSC-IVNEAMLTGESVPLMKESIELRDSDDILDIDRDDKLHVLFGGTKIVQHTPPKKASLKTPDGGCVAYVLRTG 370 (1160)
T ss_pred EEEEecce-eechhhhcCCCccccccccccCChhhhcccccccceEEEEcCceEEEecCCccccccCCCCCeEEEEEecc
Confidence 99999998 6999999999999999761 13799999997 577899999999
Q ss_pred cccccchhhhhhccccccchh--HHHHHHHHHHHHHHHHHHHhH-hhcc--CC--ccHHHHHHHHhHhhhhhhheeeecc
Q 025861 149 MRTEWGKLMETLNEGMFDSWL--FVGILVLTVAFQIIIVEFLGA-LAST--VP--LSWHLWLLCILIGAVSMPIAVVIKC 221 (247)
Q Consensus 149 ~~T~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~-~~~~--~~--~~~~~~~~~~~il~ia~P~Al~l~~ 221 (247)
.||..|++++.+..+.++-+- .-.++.++ +++++.+...++ +..+ .+ ..++.++-|.+++...+|.-|-++
T Consensus 371 FeTSQGkLvRtilf~aervTaNn~Etf~FIL-FLlVFAiaAa~Yvwv~Gskd~~RsrYKL~LeC~LIlTSVvPpELPmE- 448 (1160)
T KOG0209|consen 371 FETSQGKLVRTILFSAERVTANNRETFIFIL-FLLVFAIAAAGYVWVEGSKDPTRSRYKLFLECTLILTSVVPPELPME- 448 (1160)
T ss_pred ccccCCceeeeEEecceeeeeccHHHHHHHH-HHHHHHHHhhheEEEecccCcchhhhheeeeeeEEEeccCCCCCchh-
Confidence 999999999999875443321 11111111 111111111111 1122 22 245667777788888889888888
Q ss_pred cccCCCCcccccccce
Q 025861 222 IPVKKSEPKLQHHDGY 237 (247)
Q Consensus 222 ~P~a~~~~~~~~~~~~ 237 (247)
+..|.-.++++-.+.+
T Consensus 449 LSmAVNsSL~ALak~~ 464 (1160)
T KOG0209|consen 449 LSMAVNSSLIALAKLG 464 (1160)
T ss_pred hhHHHHHHHHHHHHhc
Confidence 7777767676654443
No 32
>PLN03190 aminophospholipid translocase; Provisional
Probab=99.84 E-value=5.7e-20 Score=186.53 Aligned_cols=124 Identities=24% Similarity=0.335 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEECCeEEEEeCCCcccCcEEEEcCCCeeeceEEEEe-----eCc
Q 025861 31 ILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFIS-----GYS 105 (247)
Q Consensus 31 ~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g~~~~v~~~~lv~GDii~v~~G~~iP~D~~v~~-----g~~ 105 (247)
+++++++..+..+.+..++.+.++-++..++..++|+|+|++++++++||+|||+|.+++||.+|||+++++ |.+
T Consensus 140 ~~PL~~vl~v~~ike~~Ed~~r~k~d~~~N~~~~~v~~~~~~~~i~~~~i~vGDiv~v~~ge~iPaD~~ll~Ss~~~G~~ 219 (1178)
T PLN03190 140 ILPLAFVLLVTAVKDAYEDWRRHRSDRIENNRLAWVLVDDQFQEKKWKDIRVGEIIKIQANDTLPCDMVLLSTSDPTGVA 219 (1178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhcCcEEEEEECCeEEEEeHHHCCCCCEEEECCCCEeeeeEEEEeccCCCceE
Confidence 344444555555555555555544455555568999999999999999999999999999999999999998 444
Q ss_pred eEEeccccCCCCcceeecCC--------------------------------------------CCEEEecceEee-ceE
Q 025861 106 LLIDESSLSGESEPMYICDE--------------------------------------------NPFLLAGTKVQD-GSV 140 (247)
Q Consensus 106 ~~vdes~lTGEs~pv~k~~~--------------------------------------------~~~v~~Gt~~~~-g~~ 140 (247)
.||||.||||+.|+.|.++ +|+++.|+.+.+ ..+
T Consensus 220 -~Vdts~LdGEt~~k~k~~~~~~~~~~~~~~~~~~~i~~e~Pn~~l~~F~G~i~~~~~~~~l~~~n~llRG~~LrnT~~i 298 (1178)
T PLN03190 220 -YVQTINLDGESNLKTRYAKQETLSKIPEKEKINGLIKCEKPNRNIYGFQANMEVDGKRLSLGPSNIILRGCELKNTAWA 298 (1178)
T ss_pred -EEEccccCCeeeeeEecccchhhhcchhhhhceEEEEEeCCCccceeEEEEEEECCCcccCCccceeeccceecCCceE
Confidence 8999999999999998642 134566666655 468
Q ss_pred EEEEEEeccccccch
Q 025861 141 KMLVTTVGMRTEWGK 155 (247)
Q Consensus 141 ~~~V~~~g~~T~~~~ 155 (247)
.++|++||++|...+
T Consensus 299 ~GvVVYTG~dTK~~~ 313 (1178)
T PLN03190 299 IGVAVYCGRETKAML 313 (1178)
T ss_pred EEEEEEechhhhHhh
Confidence 999999999998544
No 33
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=99.53 E-value=3.6e-13 Score=126.71 Aligned_cols=196 Identities=24% Similarity=0.328 Sum_probs=124.7
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEECCeEEEEeCCCcccCcEEEEcCCCeeeceE
Q 025861 19 GWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADG 98 (247)
Q Consensus 19 ~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g~~~~v~~~~lv~GDii~v~~G~~iP~D~ 98 (247)
++...|+.+...++.+.+ +-+++.+++..++-+..++... .+.-|||...+ +++++++||+|.+..+++||||.
T Consensus 126 g~l~ty~~pl~fvl~itl--~keavdd~~r~~rd~~~Nse~y---~~ltr~~~~~~-~Ss~i~vGDvi~v~K~~RVPADm 199 (1051)
T KOG0210|consen 126 GYLSTYWGPLGFVLTITL--IKEAVDDLKRRRRDRELNSEKY---TKLTRDGTRRE-PSSDIKVGDVIIVHKDERVPADM 199 (1051)
T ss_pred cchhhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhhhhhhhh---eeeccCCcccc-cccccccccEEEEecCCcCCcce
Confidence 444455555554443333 3355555555444444433322 23446665444 99999999999999999999999
Q ss_pred EEEeeC----ceEEeccccCCCCcceeecC--------------------------------------C--------CCE
Q 025861 99 IFISGY----SLLIDESSLSGESEPMYICD--------------------------------------E--------NPF 128 (247)
Q Consensus 99 ~v~~g~----~~~vdes~lTGEs~pv~k~~--------------------------------------~--------~~~ 128 (247)
++++.+ ++.+-+-.|+||..++.|-+ + +|.
T Consensus 200 ilLrTsd~sg~~FiRTDQLDGETDWKLrl~vp~tQ~l~~~~el~~i~v~Ae~P~kdIh~F~Gt~~~~d~~~~~~Lsvent 279 (1051)
T KOG0210|consen 200 ILLRTSDKSGSCFIRTDQLDGETDWKLRLPVPRTQHLTEDSELMEISVYAEKPQKDIHSFVGTFTITDSDKPESLSVENT 279 (1051)
T ss_pred EEEEccCCCCceEEeccccCCcccceeeccchhhccCCcccchheEEEeccCcchhhHhhEEEEEEecCCCCCcccccce
Confidence 999633 24699999999998877643 1 357
Q ss_pred EEecceEeeceEEEEEEEeccccccchhhhhhccccccchhHHHHHHHHHHHHHHHHHHHhHhhccCCccHHHHHHHHhH
Q 025861 129 LLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWLFVGILVLTVAFQIIIVEFLGALASTVPLSWHLWLLCILI 208 (247)
Q Consensus 129 v~~Gt~~~~g~~~~~V~~~g~~T~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i 208 (247)
+|++|++.+|.+.+.|++||.+|+....-...+.+-.--..-++.+..+++..++....+.....++...|...+.++++
T Consensus 280 LWanTVvAs~t~~gvVvYTG~dtRsvMNts~pr~KvGllelEiN~ltKiL~~~vlvLs~vmv~~~g~~~~wyi~~~Rfll 359 (1051)
T KOG0210|consen 280 LWANTVVASGTAIGVVVYTGRDTRSVMNTSRPRSKVGLLELEINGLTKILFCFVLVLSIVMVAMKGFGSDWYIYIIRFLL 359 (1051)
T ss_pred eeeeeeEecCcEEEEEEEecccHHHHhccCCcccccceeeeecccHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHH
Confidence 99999999999999999999999542211111111000012234444444444444444444555666678777888877
Q ss_pred hhhh-hhheeeec
Q 025861 209 GAVS-MPIAVVIK 220 (247)
Q Consensus 209 l~ia-~P~Al~l~ 220 (247)
|..+ +|++|-+-
T Consensus 360 LFS~IIPISLRvn 372 (1051)
T KOG0210|consen 360 LFSSIIPISLRVN 372 (1051)
T ss_pred HHhhhceeEEEEe
Confidence 6555 59998877
No 34
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=99.32 E-value=9.8e-12 Score=124.63 Aligned_cols=217 Identities=21% Similarity=0.235 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEECCe-EEEEeCCCcccCcEEEEcCCCeeeceEEEEeeCc----
Q 025861 31 ILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQ-RQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYS---- 105 (247)
Q Consensus 31 ~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g~-~~~v~~~~lv~GDii~v~~G~~iP~D~~v~~g~~---- 105 (247)
+++++++..+.++.+..++.+....++..++.++.|.|++. +++..++++++||+|.+..++.+|||.++++++.
T Consensus 84 ~~pl~~vl~~t~iKd~~eD~rR~~~D~~iN~~~~~v~~~~~~~~~~~wk~~~vGd~v~v~~~~~~paD~llLsss~~~~~ 163 (1151)
T KOG0206|consen 84 LVPLLFVLGITAIKDAIEDYRRHKQDKEVNNRKVEVLRGDGCFVEKKWKDVRVGDIVRVEKDEFVPADLLLLSSSDEDGI 163 (1151)
T ss_pred eeceeeeehHHHHHHHHhhhhhhhccHHhhcceeEEecCCceeeeeccceeeeeeEEEeccCCccccceEEecCCCCCce
Confidence 34445556667788888888888888888878999999644 8999999999999999999999999999998653
Q ss_pred eEEeccccCCCCcceeecC----------------------------------------------CCCEEEecceEee-c
Q 025861 106 LLIDESSLSGESEPMYICD----------------------------------------------ENPFLLAGTKVQD-G 138 (247)
Q Consensus 106 ~~vdes~lTGEs~pv~k~~----------------------------------------------~~~~v~~Gt~~~~-g 138 (247)
+.|+++.|.||...+.|.. .++++..|+.+.+ .
T Consensus 164 cyveT~nLDGEtnLK~k~~l~~~~~~~~~~~~~~~~~~i~cE~p~~~ly~f~g~l~~~~~~~pl~~~~~Llrg~~lrNT~ 243 (1151)
T KOG0206|consen 164 CYVETANLDGETNLKVKQALECTSKLDSEDSLKNFKGWIECEDPNANLYTFVGNLELQGQIYPLSPDNLLLRGSRLRNTE 243 (1151)
T ss_pred eEEEEeecCCccccceeeehhhhhcccccccccccCCceEEcCCcccHhhhhhheeeccCCCCCcHHHcccCCceeccCc
Confidence 6899999999998777642 0235677777776 4
Q ss_pred eEEEEEEEeccccccchhhhhhccccccchhHHHHHH----HHHHHHHHHHHHHhHhhccC---C---c-----c-----
Q 025861 139 SVKMLVTTVGMRTEWGKLMETLNEGMFDSWLFVGILV----LTVAFQIIIVEFLGALASTV---P---L-----S----- 198 (247)
Q Consensus 139 ~~~~~V~~~g~~T~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~---~---~-----~----- 198 (247)
.+.+.|+.+|.+|..++-......+.....+..+..+ .+....+++......+.... . . .
T Consensus 244 ~v~G~vv~tG~dtK~~~n~~~~~~Krs~ier~~n~~i~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (1151)
T KOG0206|consen 244 WVYGVVVFTGHDTKLMQNSGKPPSKRSRIERKMNKIIILLFVLLILMCLISAIGFAIWTRQDGRHNGEWWYLSPSEAAYA 323 (1151)
T ss_pred EEEEEEEEcCCcchHHHhcCCCccccchhhhhhhhhHHHHHHHHHHHHHHHHhhhheeeeecccccCchhhhcCchHHHH
Confidence 5889999999999988866553333222233322222 22222222222222221110 0 0 0
Q ss_pred -HHHHHHHHhHhhhhhhheeeecccccCCCCcccc--cccceeecCCCCCCC
Q 025861 199 -WHLWLLCILIGAVSMPIAVVIKCIPVKKSEPKLQ--HHDGYEEIPSGPESA 247 (247)
Q Consensus 199 -~~~~~~~~~il~ia~P~Al~l~~~P~a~~~~~~~--~~~~~~~~~~~~~~~ 247 (247)
+..++...+++-.-.|++|-.+..-+.++|+.++ +.++|-.+.+.|+++
T Consensus 324 ~~~~f~t~~il~~~liPISLyvsiEiik~~qs~fi~~D~~my~~e~d~~~~~ 375 (1151)
T KOG0206|consen 324 GFVHFLTFIILYQYLIPISLYVSIEIVKVLQSIFINNDLDMYDEETDTPAQA 375 (1151)
T ss_pred HHHHHHHHHhhhhceEEEEEEEEeeehHHHHHHHcchHHHhhhccCCCcccc
Confidence 1111222233444569999999666788888777 778888888888764
No 35
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=92.59 E-value=1 Score=46.20 Aligned_cols=187 Identities=14% Similarity=0.149 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhCC-----CeEE----EEECCeEEEEeCCCcccCcEEEEcCCCeeeceEEE
Q 025861 30 IILSILLVVMVTAISDYKQSLQFRDLDREKKK-----IFIQ----VTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIF 100 (247)
Q Consensus 30 i~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~----v~r~g~~~~v~~~~lv~GDii~v~~G~~iP~D~~v 100 (247)
++++..+..+...+...+.-++++++.+.... .... -+.-|+...+...|.+|-|..+++..+ .-+|=-.
T Consensus 112 ~i~~n~~~g~~qe~~a~~~l~~lk~~~~~~~~V~R~g~~~~i~a~eLVpGDiV~l~~gd~vPAD~rLl~~~~-l~VdEs~ 190 (917)
T COG0474 112 VVVINALLGFVQEYRAEKALEALKKMSSPKAKVLRDGKFVEIPASELVPGDIVLLEAGDVVPADLRLLESSD-LEVDESA 190 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEeCCcEEEecHHHCCCCcEEEECCCCccccceEEEEecC-ceEEccc
Confidence 33444455588888888888888877665321 1222 234688999999999999999999888 5677777
Q ss_pred EeeCceEEecccc--CCCCccee------ecCCCCEEEecceEeeceEEEEEEEeccccccchhhhhhccccc-cchhHH
Q 025861 101 ISGYSLLIDESSL--SGESEPMY------ICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGMF-DSWLFV 171 (247)
Q Consensus 101 ~~g~~~~vdes~l--TGEs~pv~------k~~~~~~v~~Gt~~~~g~~~~~V~~~g~~T~~~~i~~~~~~~~~-~~~~~~ 171 (247)
+.|++.-++-... +.|..|.. -..|.. +..|+-..--..++.-|..|+.+...+-.+....... +-.++.
T Consensus 191 LTGES~pv~K~~~~~~~~~~~~~~d~~n~l~sGt~-V~~G~~~giVvaTG~~T~~G~ia~~~~~~~~~~t~l~~~l~~~~ 269 (917)
T COG0474 191 LTGESLPVEKQALPLTKSDAPLGLDRDNMLFSGTT-VVSGRAKGIVVATGFETEFGKIARLLPTKKEVKTPLQRKLNKLG 269 (917)
T ss_pred ccCCCcchhccccccccccccccCCccceEEeCCE-EEcceEEEEEEEEcCccHHHHHHHhhccccccCCcHHHHHHHHH
Confidence 8887743333222 22333332 235776 8888844333445556777766655554432222222 223455
Q ss_pred HHHHHHHHHHHHHHHHHhHhhccCCccHHH-HHHHHhHhhhhhhheeeec
Q 025861 172 GILVLTVAFQIIIVEFLGALASTVPLSWHL-WLLCILIGAVSMPIAVVIK 220 (247)
Q Consensus 172 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~il~ia~P~Al~l~ 220 (247)
..+..+.++..++++..+...... .|.. +..++.+.+.++|-+|-+.
T Consensus 270 ~~l~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~v~l~va~IPegLp~~ 317 (917)
T COG0474 270 KFLLVLALVLGALVFVVGLFRGGN--GLLESFLTALALAVAAVPEGLPAV 317 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCc--cHHHHHHHHHHHHHhccccchHHH
Confidence 555555555555555554322121 1333 3333345555556655444
No 36
>KOG4383 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.89 E-value=0.59 Score=45.72 Aligned_cols=83 Identities=23% Similarity=0.264 Sum_probs=58.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-------c-hhC-------C--Ce------------EEEEECCe
Q 025861 22 EGMYDGLGIILSILLVVMVTAISDYKQSLQFRD-LD-------R-EKK-------K--IF------------IQVTRDGQ 71 (247)
Q Consensus 22 ~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~-l~-------~-~~~-------~--~~------------~~v~r~g~ 71 (247)
.++..+.+..+.++++..++..+++.+++..+. ++ . .+. + ++ -+..|||.
T Consensus 86 igl~nAsal~LLLLlnilL~grQdRikrr~~eqklRg~~DaI~da~kdgreiq~~nam~~dL~~pfa~s~s~h~afRDGh 165 (1354)
T KOG4383|consen 86 IGLSNASALALLLLLNILLEGRQDRIKRRAFEQKLRGAFDAILDAEKDGREIQKFNAMPKDLEAPFADSASCHSAFRDGH 165 (1354)
T ss_pred eeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCccccCccCcHHHHHHHhccCe
Confidence 457777777777778888888877765544321 11 0 110 0 00 24579999
Q ss_pred EEEEeCCCcccCcEEEEcCCCeeeceEEEEeeC
Q 025861 72 RQKVSIYDLVVGDIVHLSIGDQVPADGIFISGY 104 (247)
Q Consensus 72 ~~~v~~~~lv~GDii~v~~G~~iP~D~~v~~g~ 104 (247)
..+++..-||.||+|-++||+.-||.+.=++++
T Consensus 166 lm~lP~~LLVeGDiIa~RPGQeafan~~g~~dd 198 (1354)
T KOG4383|consen 166 LMELPRILLVEGDIIAFRPGQEAFANCEGFDDD 198 (1354)
T ss_pred eeecceeEEEeccEEEecCCccccccccccCCC
Confidence 999999999999999999999999988766653
No 37
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=85.59 E-value=0.15 Score=50.81 Aligned_cols=76 Identities=43% Similarity=0.764 Sum_probs=60.7
Q ss_pred cchhhhhhcccccc----------chhHHHHHHHHHHHHHHHHHHHhHhhccCCccHHHHHHHHhHhhhhhhheeeeccc
Q 025861 153 WGKLMETLNEGMFD----------SWLFVGILVLTVAFQIIIVEFLGALASTVPLSWHLWLLCILIGAVSMPIAVVIKCI 222 (247)
Q Consensus 153 ~~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~ia~P~Al~l~~~ 222 (247)
+-|+++.++..+-+ +..|..++...+.++++++.|.+..++..++++..|+.|+.+.+.+.|.+..+..+
T Consensus 926 ~~qvFNEinaRki~~~NvFkgi~~N~~F~~ii~~T~v~QviIveF~g~~~st~~L~~~qWl~ci~~g~~sl~~g~~ik~i 1005 (1034)
T KOG0204|consen 926 FCQVFNEINARKIDERNVFKGIFRNRLFCVIITITVVSQVIIVEFGGAFFSTTPLSLTQWLWCIFIGVLSLPWGQLLKCI 1005 (1034)
T ss_pred HHHHHHHHhhcchhHHhHHHHHhcCceEEEEeeeeeehhhhhhhhcCcceeeecccHHHHHHHHHHHHHHHHHHHHheec
Confidence 45566666544333 23456667778888999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 025861 223 PVKKSE 228 (247)
Q Consensus 223 P~a~~~ 228 (247)
|.....
T Consensus 1006 P~~~~~ 1011 (1034)
T KOG0204|consen 1006 PVSSLP 1011 (1034)
T ss_pred cccccc
Confidence 987443
No 38
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=75.38 E-value=10 Score=25.92 Aligned_cols=33 Identities=33% Similarity=0.398 Sum_probs=25.4
Q ss_pred CeEEEEECCeEEEEe---CCCcccCcEEEEcCCCee
Q 025861 62 IFIQVTRDGQRQKVS---IYDLVVGDIVHLSIGDQV 94 (247)
Q Consensus 62 ~~~~v~r~g~~~~v~---~~~lv~GDii~v~~G~~i 94 (247)
..++|-.+|..++++ ..++.|||-+++..|-.+
T Consensus 17 ~~A~v~~~G~~~~V~~~lv~~v~~Gd~VLVHaG~Ai 52 (68)
T PF01455_consen 17 GMAVVDFGGVRREVSLALVPDVKVGDYVLVHAGFAI 52 (68)
T ss_dssp TEEEEEETTEEEEEEGTTCTSB-TT-EEEEETTEEE
T ss_pred CEEEEEcCCcEEEEEEEEeCCCCCCCEEEEecChhh
Confidence 468888999999887 556889999999999654
No 39
>PRK11507 ribosome-associated protein; Provisional
Probab=68.71 E-value=7 Score=26.96 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=23.5
Q ss_pred EEEEECCeEEEEeCCCcccCcEEEEcC
Q 025861 64 IQVTRDGQRQKVSIYDLVVGDIVHLSI 90 (247)
Q Consensus 64 ~~v~r~g~~~~v~~~~lv~GDii~v~~ 90 (247)
-.|..||+.+.-.-+.|.+||+|.+..
T Consensus 37 g~V~VNGeve~rRgkKl~~GD~V~~~g 63 (70)
T PRK11507 37 GQVKVDGAVETRKRCKIVAGQTVSFAG 63 (70)
T ss_pred CceEECCEEecccCCCCCCCCEEEECC
Confidence 357789999999999999999999864
No 40
>PF10749 DUF2534: Protein of unknown function (DUF2534); InterPro: IPR019685 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae.
Probab=66.26 E-value=11 Score=26.69 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=14.2
Q ss_pred hHhhhhhhheeeecccccCCC
Q 025861 207 LIGAVSMPIAVVIKCIPVKKS 227 (247)
Q Consensus 207 ~il~ia~P~Al~l~~~P~a~~ 227 (247)
++++-|.+..+.++ +|+.++
T Consensus 60 mi~vYS~VFT~L~s-IPlg~~ 79 (85)
T PF10749_consen 60 MILVYSIVFTILLS-IPLGFY 79 (85)
T ss_pred HHHHHHHHHHHHHH-HHHHhe
Confidence 45677778888888 887643
No 41
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=64.63 E-value=4.6 Score=27.44 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=15.7
Q ss_pred EEEECCeEEEEeCCCcccCcEEEEcCCCe
Q 025861 65 QVTRDGQRQKVSIYDLVVGDIVHLSIGDQ 93 (247)
Q Consensus 65 ~v~r~g~~~~v~~~~lv~GDii~v~~G~~ 93 (247)
.|..||+.+.-.-+.|.+||+|.+ .|+.
T Consensus 34 ~V~VNGe~e~rrg~Kl~~GD~V~~-~~~~ 61 (65)
T PF13275_consen 34 EVKVNGEVETRRGKKLRPGDVVEI-DGEE 61 (65)
T ss_dssp HHEETTB----SS----SSEEEEE-TTEE
T ss_pred ceEECCEEccccCCcCCCCCEEEE-CCEE
Confidence 466799999999999999999999 4433
No 42
>smart00306 HintN Hint (Hedgehog/Intein) domain N-terminal region. Hedgehog/Intein domain, N-terminal region. Domain has been split to accommodate large insertions of endonucleases.
Probab=62.15 E-value=11 Score=26.70 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=19.4
Q ss_pred eEEEEECCeEEEEeCCCcccCcEEEEc
Q 025861 63 FIQVTRDGQRQKVSIYDLVVGDIVHLS 89 (247)
Q Consensus 63 ~~~v~r~g~~~~v~~~~lv~GDii~v~ 89 (247)
...+.++++.+.+.+++|++||.+.+.
T Consensus 73 ~~~~~~~~~~~w~~a~~l~~gd~v~~~ 99 (100)
T smart00306 73 LLLVRDGGKLVWVFASELKPGDYVLVP 99 (100)
T ss_pred EEEEecCCcEEEEEHHHCCCCCEEEec
Confidence 445555666667888899999888764
No 43
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=60.34 E-value=13 Score=36.65 Aligned_cols=76 Identities=18% Similarity=0.294 Sum_probs=43.4
Q ss_pred eCCCcccCcEEEEc-CCCeee-ceEEEEeeCceEEeccccCCCCcceeecCCCCEEEecceEeeceEEEEEEEecccccc
Q 025861 76 SIYDLVVGDIVHLS-IGDQVP-ADGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVGMRTEW 153 (247)
Q Consensus 76 ~~~~lv~GDii~v~-~G~~iP-~D~~v~~g~~~~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~g~~~~~V~~~g~~T~~ 153 (247)
.-.|+.+||.|.|+ +||.|| .++++.+-.. |+..|.. .|... =.+||.+......+..-.++..+--
T Consensus 364 ~rkdIrIGDtV~V~kAGdVIP~V~~Vv~e~R~---------~~~~~~~-~P~~C-P~C~s~l~r~~~e~~~rC~n~~~C~ 432 (667)
T COG0272 364 KRKDIRIGDTVVVRKAGDVIPQVVGVVLEKRP---------GNEKPIP-FPTHC-PVCGSELVREEGEVVIRCTNGLNCP 432 (667)
T ss_pred HhcCCCCCCEEEEEecCCCCcceeeeecccCC---------CCCCCCC-CCCCC-CCCCCeeEeccCceeEecCCCCCCh
Confidence 35899999999995 799999 6777766533 2222222 11111 2456666653333333333434555
Q ss_pred chhhhhhcc
Q 025861 154 GKLMETLNE 162 (247)
Q Consensus 154 ~~i~~~~~~ 162 (247)
+|..+.+..
T Consensus 433 aq~~e~l~h 441 (667)
T COG0272 433 AQLKERLIH 441 (667)
T ss_pred HHHhhheee
Confidence 666666554
No 44
>PF03120 DNA_ligase_OB: NAD-dependent DNA ligase OB-fold domain; InterPro: IPR004150 DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This family is a small domain found after the adenylation domain DNA_ligase_N in NAD+-dependent ligases (IPR001679 from INTERPRO). OB-fold domains generally are involved in nucleic acid binding.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 2OWO_A 1TAE_A 3UQ8_A 1DGS_A 1V9P_B 3SGI_A.
Probab=59.91 E-value=5.2 Score=28.46 Aligned_cols=22 Identities=32% Similarity=0.665 Sum_probs=16.1
Q ss_pred EeCCCcccCcEEEEc-CCCeeec
Q 025861 75 VSIYDLVVGDIVHLS-IGDQVPA 96 (247)
Q Consensus 75 v~~~~lv~GDii~v~-~G~~iP~ 96 (247)
+.-.++.+||.|.+. +||.||-
T Consensus 45 i~~~~i~~Gd~V~V~raGdVIP~ 67 (82)
T PF03120_consen 45 IKELDIRIGDTVLVTRAGDVIPK 67 (82)
T ss_dssp HHHTT-BBT-EEEEEEETTTEEE
T ss_pred HHHcCCCCCCEEEEEECCCccce
Confidence 345789999999985 7999993
No 45
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=59.47 E-value=1.4e+02 Score=31.44 Aligned_cols=81 Identities=15% Similarity=0.140 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhCC-----CeEEE----EECCeEEEEeCCCcccCcEEEEcCCCeeeceEE
Q 025861 29 GIILSILLVVMVTAISDYKQSLQFRDLDREKKK-----IFIQV----TRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGI 99 (247)
Q Consensus 29 ~i~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~v----~r~g~~~~v~~~~lv~GDii~v~~G~~iP~D~~ 99 (247)
.++++..+..++..+...++-++++++...... ....+ +--|+...+..-|.+|-|..+++.+ .+-+|=-
T Consensus 89 ~vv~in~~i~~~QE~~aekal~aL~~l~~~~~~ViRdg~~~~I~a~eLVpGDIv~L~~Gd~VPAD~rLi~~~-~L~VDES 167 (1053)
T TIGR01523 89 AIIALNILIGFIQEYKAEKTMDSLKNLASPMAHVIRNGKSDAIDSHDLVPGDICLLKTGDTIPADLRLIETK-NFDTDEA 167 (1053)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCeeeecCHhhCCCCCEEEECCCCEeeccEEEEEeC-ceEEEch
Confidence 344444555666777777777778777654321 11111 2347889999999999999999854 4557777
Q ss_pred EEeeCceEEec
Q 025861 100 FISGYSLLIDE 110 (247)
Q Consensus 100 v~~g~~~~vde 110 (247)
.+.|++.-|+-
T Consensus 168 ~LTGES~pV~K 178 (1053)
T TIGR01523 168 LLTGESLPVIK 178 (1053)
T ss_pred hhcCCCCceec
Confidence 78887754544
No 46
>PF03453 MoeA_N: MoeA N-terminal region (domain I and II); InterPro: IPR005110 This entry represents the N-terminal and linker domains of the MoeA protein. Proteins in this family contain two structural domains, one of which contains the conserved DGXA motif. These two domains are found in proteins involved in biosynthesis of molybdopterin cofactor however the exact molecular function of this region is uncertain. The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) [].; GO: 0032324 molybdopterin cofactor biosynthetic process; PDB: 1UZ5_A 1T3E_B 2FTS_A 2FU3_A 1XI8_A 1WU2_A 2NRS_A 2NRP_B 2NRO_A 2NQV_A ....
Probab=57.62 E-value=17 Score=29.10 Aligned_cols=61 Identities=18% Similarity=0.233 Sum_probs=33.4
Q ss_pred CCCcccCcEEEEcCCCeee--ceEEEEeeCceEEeccccCCCCcceeecCCCCEEEecceEeeceEE
Q 025861 77 IYDLVVGDIVHLSIGDQVP--ADGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVK 141 (247)
Q Consensus 77 ~~~lv~GDii~v~~G~~iP--~D~~v~~g~~~~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~g~~~ 141 (247)
...+.+|.-+.+..|..+| +|+++-.-+. .+.+..++ ......+++|+-..|+-+..|...
T Consensus 81 ~~~l~~g~av~I~TGa~vP~g~DaVV~~E~~-~~~~~~i~---i~~~~~~g~nIr~~G~di~~G~~l 143 (162)
T PF03453_consen 81 PIPLQPGEAVRIMTGAPVPEGADAVVPIEDT-EVEGDEIR---ILKPVKPGQNIRPKGEDIKKGEVL 143 (162)
T ss_dssp SSB--TTEEEEE-TTSB--TT-SEEEEGGGC-EEETTEEE---ESS--STTTTEE-TTSSB-TTSEE
T ss_pred cccCCCCeEEEEeCCCccCCCCCEEEEehhe-eecccEEE---EeeccCCCCcEEeCCccccCCCEE
Confidence 4789999999999999999 8988765444 44444221 112234567777777777766653
No 47
>PF15584 Imm44: Immunity protein 44
Probab=57.55 E-value=4.5 Score=29.35 Aligned_cols=19 Identities=26% Similarity=0.560 Sum_probs=15.7
Q ss_pred cCcEEEEcCCCeeeceEEE
Q 025861 82 VGDIVHLSIGDQVPADGIF 100 (247)
Q Consensus 82 ~GDii~v~~G~~iP~D~~v 100 (247)
+.+-.+++.|++|||||+=
T Consensus 13 ~~~~~~I~SG~~iP~~GIw 31 (94)
T PF15584_consen 13 PSEGGVIKSGQEIPCDGIW 31 (94)
T ss_pred CCCCCEEecCCCcccCCeE
Confidence 4556678999999999986
No 48
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=49.85 E-value=31 Score=26.50 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=24.6
Q ss_pred eEEeccccCCCCcceeecCCCCEEEecceEe
Q 025861 106 LLIDESSLSGESEPMYICDENPFLLAGTKVQ 136 (247)
Q Consensus 106 ~~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~ 136 (247)
+-+|+..+.||..-...+.||. +-+|+.+.
T Consensus 70 iGidTv~l~g~gF~~~vk~Gd~-V~~G~~l~ 99 (124)
T cd00210 70 IGIDTVKLNGEGFTSHVEEGQR-VKQGDKLL 99 (124)
T ss_pred eeeeeeecCCCceEEEecCCCE-EcCCCEEE
Confidence 3478899999988888888887 88888775
No 49
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=48.52 E-value=23 Score=26.13 Aligned_cols=29 Identities=31% Similarity=0.562 Sum_probs=23.6
Q ss_pred EEEECCeEEEEeCCCcccCcEEEEcCCCee
Q 025861 65 QVTRDGQRQKVSIYDLVVGDIVHLSIGDQV 94 (247)
Q Consensus 65 ~v~r~g~~~~v~~~~lv~GDii~v~~G~~i 94 (247)
+|.-||+.. =+++++++||++.+.-|...
T Consensus 35 rV~vNG~~a-KpS~~VK~GD~l~i~~~~~~ 63 (100)
T COG1188 35 RVKVNGQRA-KPSKEVKVGDILTIRFGNKE 63 (100)
T ss_pred eEEECCEEc-ccccccCCCCEEEEEeCCcE
Confidence 455677655 68999999999999988775
No 50
>COG3924 Predicted membrane protein [Function unknown]
Probab=47.08 E-value=82 Score=21.83 Aligned_cols=42 Identities=17% Similarity=0.075 Sum_probs=25.8
Q ss_pred chhhHHHHHHHHhhhcCCC------CCchhhHHHHHHHHHHHHHHHHH
Q 025861 2 KVSANVIYLSGVGLATEGW------PEGMYDGLGIILSILLVVMVTAI 43 (247)
Q Consensus 2 gl~~a~~~s~~~~~~~~~~------~~~~~~~~~i~~~v~~~~~~~~~ 43 (247)
|+.+.|+....+..+..+. ..-|||..++.+++++....-.+
T Consensus 17 gLtllYl~gW~v~AYlp~~t~G~~gfP~WFE~aCi~lPllFi~l~~~m 64 (80)
T COG3924 17 GLTLLYLAGWLVAAYLPGNTPGFTGFPLWFEMACILLPLLFIVLCWAM 64 (80)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666555443221 23599999999997665544333
No 51
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=46.70 E-value=40 Score=23.56 Aligned_cols=31 Identities=29% Similarity=0.372 Sum_probs=23.5
Q ss_pred eEEEEECCeEEEEe---CCCcccCcEEEEcCCCe
Q 025861 63 FIQVTRDGQRQKVS---IYDLVVGDIVHLSIGDQ 93 (247)
Q Consensus 63 ~~~v~r~g~~~~v~---~~~lv~GDii~v~~G~~ 93 (247)
.++|-.+|..++++ ..++.|||-|++..|-.
T Consensus 16 ~A~v~~~G~~~~v~l~lv~~~~vGD~VLVH~G~A 49 (76)
T TIGR00074 16 IALVEFCGIKRDVSLDLVGEVKVGDYVLVHVGFA 49 (76)
T ss_pred EEEEEcCCeEEEEEEEeeCCCCCCCEEEEecChh
Confidence 46676677776665 45789999999999854
No 52
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=46.02 E-value=37 Score=25.94 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=23.5
Q ss_pred eEEeccccCCCCcceeecCCCCEEEecceEe
Q 025861 106 LLIDESSLSGESEPMYICDENPFLLAGTKVQ 136 (247)
Q Consensus 106 ~~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~ 136 (247)
+-+|+..|.||..-...+.||. +-+|..+.
T Consensus 70 iGidTV~L~G~gF~~~v~~Gd~-V~~G~~l~ 99 (121)
T TIGR00830 70 IGIDTVKLNGEGFTSHVEEGQR-VKKGDPLL 99 (121)
T ss_pred eeeceeecCCCceEEEecCCCE-EcCCCEEE
Confidence 3478888999988888888887 77777665
No 53
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=45.98 E-value=51 Score=23.21 Aligned_cols=8 Identities=38% Similarity=0.219 Sum_probs=0.0
Q ss_pred ccCcEEEE
Q 025861 81 VVGDIVHL 88 (247)
Q Consensus 81 v~GDii~v 88 (247)
+|||-|..
T Consensus 38 k~Gd~VvT 45 (82)
T PF02699_consen 38 KPGDEVVT 45 (82)
T ss_dssp --------
T ss_pred CCCCEEEE
Confidence 33333333
No 54
>PRK04980 hypothetical protein; Provisional
Probab=43.88 E-value=39 Score=25.08 Aligned_cols=57 Identities=16% Similarity=0.078 Sum_probs=36.5
Q ss_pred eEEEEECCeEEEEeCCCcccCcEEEEc--CCCeeeceEEEEeeCceEEec-----cccCCCCcceeecC
Q 025861 63 FIQVTRDGQRQKVSIYDLVVGDIVHLS--IGDQVPADGIFISGYSLLIDE-----SSLSGESEPMYICD 124 (247)
Q Consensus 63 ~~~v~r~g~~~~v~~~~lv~GDii~v~--~G~~iP~D~~v~~g~~~~vde-----s~lTGEs~pv~k~~ 124 (247)
+..-+||+. -...+|||.+.+. .+++.-|+..+++=....+|| +..-|+|.+.-|..
T Consensus 20 KTiTiRd~s-----e~~~~~G~~~~V~~~e~g~~~c~ieI~sV~~i~f~eLte~hA~qEg~sL~elk~~ 83 (102)
T PRK04980 20 KTITIRDES-----ESHFKPGDVLRVGTFEDDRYFCTIEVLSVSPVTFDELNEKHAEQENMTLPELKQV 83 (102)
T ss_pred ceEEeeCCc-----ccCCCCCCEEEEEECCCCcEEEEEEEEEEEEEehhhCCHHHHHHhCCCHHHHHHH
Confidence 344456642 3578999999996 777888999998765433332 34456665554443
No 55
>PRK11479 hypothetical protein; Provisional
Probab=43.74 E-value=5.6 Score=34.88 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=17.8
Q ss_pred EEEeCCCcccCcEEEEcCCCe
Q 025861 73 QKVSIYDLVVGDIVHLSIGDQ 93 (247)
Q Consensus 73 ~~v~~~~lv~GDii~v~~G~~ 93 (247)
..|+.++++|||++..+.+..
T Consensus 58 ~~Vs~~~LqpGDLVFfst~t~ 78 (274)
T PRK11479 58 KEITAPDLKPGDLLFSSSLGV 78 (274)
T ss_pred cccChhhCCCCCEEEEecCCc
Confidence 478999999999999987653
No 56
>cd00081 Hint Hedgehog/Intein domain, found in Hedgehog proteins as well as proteins which contain inteins and undergo protein splicing (e.g. DnaB, RIR1-2, GyrA and Pol). In protein splicing an intervening polypeptide sequence - the intein - is excised from a protein, and the flanking polypeptide sequences - the exteins - are joined by a peptide bond. In addition to the autocatalytic splicing domain, many inteins contain an inserted endonuclease domain, which plays a role in spreading inteins. Hedgehog proteins are a major class of intercellular signaling molecules, which control inductive interactions during animal development. The mature signaling forms of hedgehog proteins are the N-terminal fragments, which are covalently linked to cholesterol at their C-termini. This modification is the result of an autoprocessing step catalyzed by the C-terminal fragments, which are aligned here.
Probab=42.67 E-value=36 Score=25.49 Aligned_cols=29 Identities=31% Similarity=0.337 Sum_probs=23.2
Q ss_pred CCeEEEEECCeEEEEeCCCcccCcEEEEc
Q 025861 61 KIFIQVTRDGQRQKVSIYDLVVGDIVHLS 89 (247)
Q Consensus 61 ~~~~~v~r~g~~~~v~~~~lv~GDii~v~ 89 (247)
+....+.+++++..+.+++|.+||.+...
T Consensus 71 ~H~~~~~~~~~~~~~~a~~l~~gd~l~~~ 99 (136)
T cd00081 71 DHLLFVLEDGELKWVFASDLKPGDYVLVP 99 (136)
T ss_pred CCEEEEEeCCeEEEEEHHHCCCCCEEEEc
Confidence 34555666667788999999999999997
No 57
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=41.72 E-value=94 Score=30.96 Aligned_cols=64 Identities=14% Similarity=0.110 Sum_probs=39.0
Q ss_pred ECCeEEEEeCCCcccCcEEEEcCCCeeeceEEEEeeCceEEeccccCCCCcceeecCCCCEEEecceEee
Q 025861 68 RDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQD 137 (247)
Q Consensus 68 r~g~~~~v~~~~lv~GDii~v~~G~~iP~D~~v~~g~~~~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~ 137 (247)
+-|+...+..-|.+|.|-..++. +. -+|--.+.|++.-++-.. -||... ...|.. +-+|.....
T Consensus 124 v~GDiV~v~~Gd~IPaDG~vieG-~~-~VDESaLTGES~PV~K~~-g~d~~~--V~aGT~-v~~G~~~i~ 187 (673)
T PRK14010 124 KKGHIVRVATGEQIPNDGKVIKG-LA-TVDESAITGESAPVIKES-GGDFDN--VIGGTS-VASDWLEVE 187 (673)
T ss_pred CCCCEEEECCCCcccCCeEEEEc-ce-EEecchhcCCCCceeccC-CCccCe--eecCce-eecceEEEE
Confidence 45778888888888888887764 33 677777777764333211 133222 345554 667765543
No 58
>cd00433 Peptidase_M17 Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants.
Probab=41.27 E-value=54 Score=31.10 Aligned_cols=61 Identities=21% Similarity=0.257 Sum_probs=40.9
Q ss_pred chhCCCeEEEEECCeEEEEeCCCcccCcEEEEcCCCeee-----ceEEEEeeCc----------eEEeccccCCCC
Q 025861 57 REKKKIFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVP-----ADGIFISGYS----------LLIDESSLSGES 117 (247)
Q Consensus 57 ~~~~~~~~~v~r~g~~~~v~~~~lv~GDii~v~~G~~iP-----~D~~v~~g~~----------~~vdes~lTGEs 117 (247)
++..+.++..+-.=-+-.++.+-.+|||+|.-..|-.|= |.|+++=.+. ..+|-+.|||--
T Consensus 279 ~l~~~vnV~~i~~~~EN~is~~A~rPgDVi~s~~GkTVEI~NTDAEGRLVLaDal~ya~~~~p~~iIDiATLTGA~ 354 (468)
T cd00433 279 ELKLPVNVVGVLPLAENMISGNAYRPGDVITSRSGKTVEILNTDAEGRLVLADALTYAQEFKPDLIIDIATLTGAA 354 (468)
T ss_pred HcCCCceEEEEEEeeecCCCCCCCCCCCEeEeCCCcEEEEecCCcccceeehhHHHHHhhcCCCEEEEecchHHHH
Confidence 334334444443333456889999999999999998875 5677765433 358888888854
No 59
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=40.71 E-value=22 Score=37.86 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=27.3
Q ss_pred CCeEEEEECCeEEEEeCCCcccCcEEEEcCCC
Q 025861 61 KIFIQVTRDGQRQKVSIYDLVVGDIVHLSIGD 92 (247)
Q Consensus 61 ~~~~~v~r~g~~~~v~~~~lv~GDii~v~~G~ 92 (247)
+..+.++++|+|....+.||++||.+.+...+
T Consensus 987 dHPVLv~~~Gk~i~K~A~dlK~GD~vvIPK~~ 1018 (1627)
T PRK14715 987 DHPVMVYENGKFIKKRAMDVKEGDLMLIPKLD 1018 (1627)
T ss_pred CCceEEeccCccceeehhhcCcCceeeccccc
Confidence 34577888999999999999999999998653
No 60
>PRK15078 polysaccharide export protein Wza; Provisional
Probab=40.12 E-value=50 Score=30.32 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=25.2
Q ss_pred CeEEEEECCeEEEEeCCC------------cccCcEEEEcCC--CeeeceEEE
Q 025861 62 IFIQVTRDGQRQKVSIYD------------LVVGDIVHLSIG--DQVPADGIF 100 (247)
Q Consensus 62 ~~~~v~r~g~~~~v~~~~------------lv~GDii~v~~G--~~iP~D~~v 100 (247)
..+.+.|+|+...++.++ |++||+|.+..- ..+-+-|.+
T Consensus 211 ~~V~l~R~g~~~~i~l~~ll~~g~~~~ni~L~~GDvI~Vp~~~~~~v~V~GeV 263 (379)
T PRK15078 211 RNVVLTHNGKEERISLQALMQNGDLSQNRLLYPGDILYVPRNDDLKVFVMGEV 263 (379)
T ss_pred ceEEEEECCeEEEEEHHHHHhcCCcccCceeCCCCEEEECCCCCcEEEEeeec
Confidence 468899999988887433 667777777542 234444444
No 61
>PRK14898 DNA-directed RNA polymerase subunit A''; Provisional
Probab=39.29 E-value=32 Score=35.15 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=27.4
Q ss_pred CCeEEEEECCeEEEEeCCCcccCcEEEEcCCCeeec
Q 025861 61 KIFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPA 96 (247)
Q Consensus 61 ~~~~~v~r~g~~~~v~~~~lv~GDii~v~~G~~iP~ 96 (247)
+....+.+||++..+..++|++||.+.+.. .+|.
T Consensus 168 ~H~~~v~~~g~~~~~~a~~l~~GD~i~~~~--~~~~ 201 (858)
T PRK14898 168 YHSFVTRKDNEVIPVEGSELKIGDWLPVVR--SLPA 201 (858)
T ss_pred CCeEEEeeCCeEEEeeHHhCCCCCEEeeee--eccc
Confidence 445678899999999999999999987754 4554
No 62
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=37.59 E-value=46 Score=23.12 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=23.5
Q ss_pred EEEEECCeEEEEeCCCcccCcEEEEcC
Q 025861 64 IQVTRDGQRQKVSIYDLVVGDIVHLSI 90 (247)
Q Consensus 64 ~~v~r~g~~~~v~~~~lv~GDii~v~~ 90 (247)
-.|..||+.+.-.-..|..||+|.+..
T Consensus 37 g~V~vNGe~EtRRgkKlr~gd~V~i~~ 63 (73)
T COG2501 37 GEVKVNGEVETRRGKKLRDGDVVEIPG 63 (73)
T ss_pred CeEEECCeeeeccCCEeecCCEEEECC
Confidence 468889999999999999999998864
No 63
>PRK15175 Vi polysaccharide export protein VexA; Provisional
Probab=37.57 E-value=62 Score=29.54 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=20.3
Q ss_pred CeEEEEECCeEEEEeCCC----------cccCcEEEEcC
Q 025861 62 IFIQVTRDGQRQKVSIYD----------LVVGDIVHLSI 90 (247)
Q Consensus 62 ~~~~v~r~g~~~~v~~~~----------lv~GDii~v~~ 90 (247)
..+++.|+|+...++..+ |.+||+|.+..
T Consensus 198 ~~V~l~R~~~~~~i~l~dL~~~~~~ni~L~~GDvI~V~~ 236 (355)
T PRK15175 198 MEVHVTRQQHYFTARLSDIYQYPGLDIALQPDDRITLRQ 236 (355)
T ss_pred cEEEEEECCEEEEEEHHHHhhCCcCCcEeCCCCEEEEcc
Confidence 468899999988876655 44566665553
No 64
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=37.19 E-value=69 Score=27.23 Aligned_cols=28 Identities=29% Similarity=0.490 Sum_probs=17.3
Q ss_pred CeEEEEECCeEEEEeCCCcccCcEEEEcCCCee
Q 025861 62 IFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQV 94 (247)
Q Consensus 62 ~~~~v~r~g~~~~v~~~~lv~GDii~v~~G~~i 94 (247)
..++|..||..+.++ +|..+.++|||.|
T Consensus 137 ~~v~V~~DG~~~t~~-----aG~~l~L~PGESi 164 (225)
T PF07385_consen 137 TDVTVPVDGIRRTVP-----AGTQLRLNPGESI 164 (225)
T ss_dssp S-EEEEETTEEEEE------TT-EEEE-TT-EE
T ss_pred CCeEEecCCcEEEec-----CCceEEeCCCCeE
Confidence 457788888777655 4888888888876
No 65
>PRK10413 hydrogenase 2 accessory protein HypG; Provisional
Probab=36.33 E-value=67 Score=22.81 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=23.8
Q ss_pred eEEEEECCeEEEEeCC-------CcccCcEEEEcCCCee
Q 025861 63 FIQVTRDGQRQKVSIY-------DLVVGDIVHLSIGDQV 94 (247)
Q Consensus 63 ~~~v~r~g~~~~v~~~-------~lv~GDii~v~~G~~i 94 (247)
.++|-.+|..++|+.. ++.+||-|++..|-.+
T Consensus 19 ~A~vd~~Gv~r~V~l~Lv~~~~~~~~vGDyVLVHaGfAi 57 (82)
T PRK10413 19 LAQVEVCGIKRDVNIALICEGNPADLLGQWVLVHVGFAM 57 (82)
T ss_pred EEEEEcCCeEEEEEeeeeccCCcccccCCEEEEecchhh
Confidence 5777788887777633 4568999999988543
No 66
>PF07591 PT-HINT: Pretoxin HINT domain; InterPro: IPR011451 This entry represents a cluster of homologous proteins identified in Leptospira interrogans. One member (Q8EZX6 from SWISSPROT) has been predicted to be a phenazine biosynthesis family protein.; PDB: 2JNQ_A 2JMZ_A.
Probab=36.00 E-value=29 Score=26.66 Aligned_cols=28 Identities=32% Similarity=0.240 Sum_probs=17.2
Q ss_pred EEEeCCCcccCcEEEEcCCCeeeceEEE
Q 025861 73 QKVSIYDLVVGDIVHLSIGDQVPADGIF 100 (247)
Q Consensus 73 ~~v~~~~lv~GDii~v~~G~~iP~D~~v 100 (247)
..+++++|++||.+.-..|+......+-
T Consensus 70 gWv~A~~L~~GD~L~~~~G~~~~v~~i~ 97 (130)
T PF07591_consen 70 GWVEAEDLKVGDRLLTADGSWVTVTSIR 97 (130)
T ss_dssp --EEGGG--TTSEEEEE-SSEEEEE---
T ss_pred hhhhHhhCCCCCEEEcCCCCEEEEEEEE
Confidence 4678999999999999889877655543
No 67
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=33.98 E-value=63 Score=20.65 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=25.0
Q ss_pred eEEEE-ECCeEEEEeC-CCcccCcEEEEcCCCeee
Q 025861 63 FIQVT-RDGQRQKVSI-YDLVVGDIVHLSIGDQVP 95 (247)
Q Consensus 63 ~~~v~-r~g~~~~v~~-~~lv~GDii~v~~G~~iP 95 (247)
.+.|+ .||+..+++. .+..+||.|.+.+.+..+
T Consensus 7 ~aiVlT~dGeF~~ik~~~~~~vG~eI~~~~~~~~~ 41 (56)
T PF12791_consen 7 YAIVLTPDGEFIKIKRKPGMEVGQEIEFDEKDIIN 41 (56)
T ss_pred EEEEEcCCCcEEEEeCCCCCcccCEEEEechhhcc
Confidence 44444 6889888874 369999999999887765
No 68
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=33.87 E-value=50 Score=30.70 Aligned_cols=26 Identities=15% Similarity=0.396 Sum_probs=21.8
Q ss_pred CCCcccCcEEEEcCCCeee--ceEEEEe
Q 025861 77 IYDLVVGDIVHLSIGDQVP--ADGIFIS 102 (247)
Q Consensus 77 ~~~lv~GDii~v~~G~~iP--~D~~v~~ 102 (247)
...+.+|.-+.+..|..+| ||+++-.
T Consensus 87 ~~~~~~g~av~I~TGa~vP~gaDaVv~~ 114 (411)
T PRK10680 87 HGEWPAGTCIRIMTGAPVPEGCEAVVMQ 114 (411)
T ss_pred CcccCCCeEEEEecCCcCCCCCCEEEEE
Confidence 4568889999999999999 7888864
No 69
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=33.84 E-value=28 Score=22.53 Aligned_cols=12 Identities=42% Similarity=0.817 Sum_probs=10.3
Q ss_pred ccCcEEEEcCCC
Q 025861 81 VVGDIVHLSIGD 92 (247)
Q Consensus 81 v~GDii~v~~G~ 92 (247)
.+||+|.++.|.
T Consensus 2 ~~GDvV~LKSGG 13 (53)
T PF09926_consen 2 KIGDVVQLKSGG 13 (53)
T ss_pred CCCCEEEEccCC
Confidence 589999999874
No 70
>PRK00913 multifunctional aminopeptidase A; Provisional
Probab=33.73 E-value=85 Score=29.93 Aligned_cols=60 Identities=18% Similarity=0.205 Sum_probs=38.2
Q ss_pred hhCCCeEEEEECCeEEEEeCCCcccCcEEEEcCCCeee-----ceEEEEeeCc----------eEEeccccCCCC
Q 025861 58 EKKKIFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVP-----ADGIFISGYS----------LLIDESSLSGES 117 (247)
Q Consensus 58 ~~~~~~~~v~r~g~~~~v~~~~lv~GDii~v~~G~~iP-----~D~~v~~g~~----------~~vdes~lTGEs 117 (247)
+..+.++..+-.=-+-.++.+-.+|||+|.-..|-.|= |.|+++=.+. ..+|-+.|||--
T Consensus 294 lkl~vnV~~v~~l~ENm~~~~A~rPgDVi~~~~GkTVEV~NTDAEGRLvLADal~ya~~~~p~~iiDiATLTGa~ 368 (483)
T PRK00913 294 LKLPVNVVGVVAACENMPSGNAYRPGDVLTSMSGKTIEVLNTDAEGRLVLADALTYAERFKPDAIIDVATLTGAC 368 (483)
T ss_pred cCCCceEEEEEEeeccCCCCCCCCCCCEEEECCCcEEEeecCCcccceeehhHHHHhhhcCCCEEEEecchHHHH
Confidence 33333443333333456888999999999999987765 4566664332 357777777743
No 71
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=32.92 E-value=50 Score=21.35 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=18.0
Q ss_pred EEECCeEEEEeCCCcccCcEEEE
Q 025861 66 VTRDGQRQKVSIYDLVVGDIVHL 88 (247)
Q Consensus 66 v~r~g~~~~v~~~~lv~GDii~v 88 (247)
|.-||+...-+...|.+||.|.+
T Consensus 36 V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 36 VLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred EEECCEEccCCCCCCCCCCEEEe
Confidence 44488876667899999999876
No 72
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=32.39 E-value=56 Score=30.08 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=22.8
Q ss_pred CCcccCcEEEEcCCCeee--ceEEEEeeC
Q 025861 78 YDLVVGDIVHLSIGDQVP--ADGIFISGY 104 (247)
Q Consensus 78 ~~lv~GDii~v~~G~~iP--~D~~v~~g~ 104 (247)
..+.+|.-+.+..|..+| ||+++-.-+
T Consensus 79 ~~~~~g~av~I~TGa~lP~gaDaVV~~E~ 107 (394)
T cd00887 79 GPLGPGEAVRIMTGAPLPEGADAVVMVED 107 (394)
T ss_pred cccCCCeEEEEcCCCCCCCCCCEEEEEEe
Confidence 468899999999999999 899886433
No 73
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=32.14 E-value=81 Score=25.58 Aligned_cols=54 Identities=22% Similarity=0.269 Sum_probs=40.9
Q ss_pred cCcEEEEcCCC--e-eeceEEEEe----eCc--------------eEEeccccCCCCcceeecCCCCEEEecceEe
Q 025861 82 VGDIVHLSIGD--Q-VPADGIFIS----GYS--------------LLIDESSLSGESEPMYICDENPFLLAGTKVQ 136 (247)
Q Consensus 82 ~GDii~v~~G~--~-iP~D~~v~~----g~~--------------~~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~ 136 (247)
.||=+-+.|-+ . -|+||.+.. +++ +-+|+-.|.||-.-...+.||. +-+|+.+.
T Consensus 47 mGdGvAI~P~~~~v~AP~dG~V~~vf~T~HAigi~t~~G~eiLIHiGiDTV~L~G~gF~~~Vk~Gd~-Vk~G~~L~ 121 (169)
T PRK09439 47 VGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQR-VKVGDPII 121 (169)
T ss_pred ccceEEEEccCCEEEecCCeEEEEEcCCCCEEEEEeCCCcEEEEEEeecccccCCCceEEEecCCCE-EeCCCEEE
Confidence 37766666533 2 589999864 121 3579999999999999999998 99999886
No 74
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=30.78 E-value=76 Score=29.70 Aligned_cols=19 Identities=21% Similarity=0.184 Sum_probs=9.9
Q ss_pred CCcccCcEEEEcCCCeeec
Q 025861 78 YDLVVGDIVHLSIGDQVPA 96 (247)
Q Consensus 78 ~~lv~GDii~v~~G~~iP~ 96 (247)
+.++|||.|.++.|..-..
T Consensus 12 ~~a~pGD~I~L~~Gty~~~ 30 (425)
T PF14592_consen 12 DNAKPGDTIVLADGTYKDV 30 (425)
T ss_dssp HH--TT-EEEE-SEEEET-
T ss_pred HhCCCCCEEEECCceeecc
Confidence 3567888888888876533
No 75
>TIGR02219 phage_NlpC_fam putative phage cell wall peptidase, NlpC/P60 family. Members of this family show sequence similarity to members of the NlpC/P60 family described by Pfam model pfam00877 and by Anantharaman and Aravind (PubMed:12620121). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes.
Probab=30.64 E-value=26 Score=27.05 Aligned_cols=18 Identities=17% Similarity=0.135 Sum_probs=14.8
Q ss_pred EEEeCCCcccCcEEEEcC
Q 025861 73 QKVSIYDLVVGDIVHLSI 90 (247)
Q Consensus 73 ~~v~~~~lv~GDii~v~~ 90 (247)
..|+.++++|||+|..+.
T Consensus 70 ~~v~~~~~qpGDlvff~~ 87 (134)
T TIGR02219 70 VPVPCDAAQPGDVLVFRW 87 (134)
T ss_pred cccchhcCCCCCEEEEee
Confidence 356778999999999973
No 76
>PRK05015 aminopeptidase B; Provisional
Probab=30.38 E-value=1.3e+02 Score=28.15 Aligned_cols=47 Identities=28% Similarity=0.485 Sum_probs=34.0
Q ss_pred EEEEeCCCcccCcEEEEcCCCeee-----ceEEEEeeCc----------eEEeccccCCCCc
Q 025861 72 RQKVSIYDLVVGDIVHLSIGDQVP-----ADGIFISGYS----------LLIDESSLSGESE 118 (247)
Q Consensus 72 ~~~v~~~~lv~GDii~v~~G~~iP-----~D~~v~~g~~----------~~vdes~lTGEs~ 118 (247)
+-.++.+-.+|||+|.-..|-.|= |.|+++=.+. ..+|-+.|||...
T Consensus 245 ENmisg~A~kpgDVIt~~nGkTVEI~NTDAEGRLVLAD~L~yA~~~~p~~IID~ATLTGA~~ 306 (424)
T PRK05015 245 ENLISGNAFKLGDIITYRNGKTVEVMNTDAEGRLVLADGLIDASEQGPPLIIDAATLTGAAK 306 (424)
T ss_pred ccCCCCCCCCCCCEEEecCCcEEeeeccCccceeeehhHHHHhhhcCCCEEEEeeccchhhH
Confidence 346888999999999999887764 4566654332 4588888887654
No 77
>PRK10409 hydrogenase assembly chaperone; Provisional
Probab=29.79 E-value=93 Score=22.52 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=23.6
Q ss_pred eEEEEECCeEEEEeCC---------CcccCcEEEEcCCCee
Q 025861 63 FIQVTRDGQRQKVSIY---------DLVVGDIVHLSIGDQV 94 (247)
Q Consensus 63 ~~~v~r~g~~~~v~~~---------~lv~GDii~v~~G~~i 94 (247)
.++|-..|..++|+.. +..+||-|++..|-.+
T Consensus 16 ~A~vd~~Gv~reV~l~Lv~~~~~~~~~~vGDyVLVHaGfAi 56 (90)
T PRK10409 16 QAKVDVCGIQRDVDLTLVGSCDENGQPRVGQWVLVHVGFAM 56 (90)
T ss_pred eEEEEcCCeEEEEEEeeecccCCCCccCCCCEEEEecChHH
Confidence 4677777877777643 3689999999998543
No 78
>PRK06033 hypothetical protein; Validated
Probab=29.62 E-value=23 Score=25.11 Aligned_cols=25 Identities=12% Similarity=0.349 Sum_probs=17.5
Q ss_pred EEeCCCcccCcEEEEcCCCeeeceE
Q 025861 74 KVSIYDLVVGDIVHLSIGDQVPADG 98 (247)
Q Consensus 74 ~v~~~~lv~GDii~v~~G~~iP~D~ 98 (247)
.....++...|++.+++||.+|.|-
T Consensus 14 ~Lg~~~i~l~dlL~L~~GDVI~L~~ 38 (83)
T PRK06033 14 VLGRSSMPIHQVLRMGRGAVIPLDA 38 (83)
T ss_pred EEecccccHHHHhCCCCCCEEEeCC
Confidence 4556677777788888888877643
No 79
>PRK08433 flagellar motor switch protein; Validated
Probab=29.19 E-value=24 Score=26.61 Aligned_cols=59 Identities=7% Similarity=0.143 Sum_probs=35.0
Q ss_pred EEEeCCCcccCcEEEEcCCCeeeceEEEEeeCceEEeccccCCCCcceeecCCCCEEEecceEee-ceEEEEEEEe
Q 025861 73 QKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQD-GSVKMLVTTV 147 (247)
Q Consensus 73 ~~v~~~~lv~GDii~v~~G~~iP~D~~v~~g~~~~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~-g~~~~~V~~~ 147 (247)
..+...++...|++.+++||.+|.|-.. ..|+.-..++...|.|..... |..=++++..
T Consensus 38 v~LG~t~itl~dlL~Lq~GDVI~Ld~~~----------------~e~v~v~V~g~~~f~G~~G~~~~k~AVrI~e~ 97 (111)
T PRK08433 38 AELGTTQISLLEILKFEKGSVIDLEKPA----------------GESVELYINGRIIGKGEVMVYEKNLAIRINEI 97 (111)
T ss_pred EEEecccccHHHHhCCCCCCEEEeCCCC----------------CCCEEEEECCEEEEEEEEEEECCEEEEEEEEe
Confidence 4566677788888888888888865422 122333333334777776655 3444445554
No 80
>PLN03190 aminophospholipid translocase; Provisional
Probab=28.60 E-value=1.7e+02 Score=31.27 Aligned_cols=62 Identities=23% Similarity=0.276 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh-----CCCeEEE----EECCeEEEEeCCCcccCcEEEEc
Q 025861 28 LGIILSILLVVMVTAISDYKQSLQFRDLDREK-----KKIFIQV----TRDGQRQKVSIYDLVVGDIVHLS 89 (247)
Q Consensus 28 ~~i~~~v~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~v----~r~g~~~~v~~~~lv~GDii~v~ 89 (247)
+.+++++++...-+.+.+++..++-++.++.. +.....+ ++-|+...+...|..|-|.+.+.
T Consensus 141 ~PL~~vl~v~~ike~~Ed~~r~k~d~~~N~~~~~v~~~~~~~~i~~~~i~vGDiv~v~~ge~iPaD~~ll~ 211 (1178)
T PLN03190 141 LPLAFVLLVTAVKDAYEDWRRHRSDRIENNRLAWVLVDDQFQEKKWKDIRVGEIIKIQANDTLPCDMVLLS 211 (1178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhcCcEEEEEECCeEEEEeHHHCCCCCEEEECCCCEeeeeEEEEe
Confidence 33444444444555566555555554444332 1111222 35688999999999999999997
No 81
>PRK06788 flagellar motor switch protein; Validated
Probab=28.43 E-value=23 Score=27.08 Aligned_cols=66 Identities=12% Similarity=0.221 Sum_probs=42.6
Q ss_pred EEEeCCCcccCcEEEEcCCCeeeceEEEEeeCceEEeccccCCCCcceeecCCCCEEEecceEee-ceEEEEEEEecccc
Q 025861 73 QKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQD-GSVKMLVTTVGMRT 151 (247)
Q Consensus 73 ~~v~~~~lv~GDii~v~~G~~iP~D~~v~~g~~~~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~-g~~~~~V~~~g~~T 151 (247)
.++...++.++|++.++.||.||.|-.. ..|+.-..++...|.|..... +..-++++....+-
T Consensus 40 aeLG~t~ltl~DlL~L~vGDVI~Ldk~~----------------~dpv~v~Vng~~~f~G~~Gv~~~~~AVrItei~~~~ 103 (119)
T PRK06788 40 VKLGKASITLGDVKQLKVGDVLEVEKNL----------------GHKVDVYLSNMKVGIGEAIVMDEKFGIIISEIEADK 103 (119)
T ss_pred EEEecceecHHHHhCCCCCCEEEeCCcC----------------CCCEEEEECCEEEEEEEEEEECCEEEEEEEEecChH
Confidence 4567778888999999999998876443 123333344444777776654 55666777776544
Q ss_pred ccc
Q 025861 152 EWG 154 (247)
Q Consensus 152 ~~~ 154 (247)
..+
T Consensus 104 ~~~ 106 (119)
T PRK06788 104 KQA 106 (119)
T ss_pred HHH
Confidence 333
No 82
>PF06820 Phage_fiber_C: Putative prophage tail fibre C-terminus; InterPro: IPR009640 This entry represents the C terminus of phage 933W tail fibre protein. This domain is found together with conserved RLGP motif. The characteristics of the protein distribution suggest prophage matches.
Probab=27.02 E-value=48 Score=21.91 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=22.4
Q ss_pred cccCcEEEEcCCCeee-ceEEEEeeCc
Q 025861 80 LVVGDIVHLSIGDQVP-ADGIFISGYS 105 (247)
Q Consensus 80 lv~GDii~v~~G~~iP-~D~~v~~g~~ 105 (247)
|-|+|++....+..+| -||.++.+-.
T Consensus 5 lgpa~ile~nsnG~~P~tdg~liT~lt 31 (64)
T PF06820_consen 5 LGPADILESNSNGWFPETDGRLITGLT 31 (64)
T ss_pred cCchheeeecCCccccCCCcceEeeeE
Confidence 5689999999988999 6889988876
No 83
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=26.17 E-value=90 Score=16.32 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=15.2
Q ss_pred cccCcEEEEcCCCeeeceEEEEe
Q 025861 80 LVVGDIVHLSIGDQVPADGIFIS 102 (247)
Q Consensus 80 lv~GDii~v~~G~~iP~D~~v~~ 102 (247)
+.+||.+.+..|..----|.+++
T Consensus 2 ~~~G~~V~I~~G~~~g~~g~i~~ 24 (28)
T smart00739 2 FEVGDTVRVIAGPFKGKVGKVLE 24 (28)
T ss_pred CCCCCEEEEeECCCCCcEEEEEE
Confidence 56888888887765544455443
No 84
>PRK10838 spr outer membrane lipoprotein; Provisional
Probab=25.84 E-value=44 Score=27.64 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=16.6
Q ss_pred EEEeCCCcccCcEEEEcCCC
Q 025861 73 QKVSIYDLVVGDIVHLSIGD 92 (247)
Q Consensus 73 ~~v~~~~lv~GDii~v~~G~ 92 (247)
..|+.++++|||+|..+.|.
T Consensus 122 ~~V~~~~lqpGDLVfF~~~~ 141 (190)
T PRK10838 122 KSVSRSKLRTGDLVLFRAGS 141 (190)
T ss_pred cCcccCCCCCCcEEEECCCC
Confidence 45778899999999998664
No 85
>TIGR02480 fliN flagellar motor switch protein FliN. Proteins that consist largely of the domain described by this model can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica.
Probab=24.40 E-value=29 Score=24.01 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=14.1
Q ss_pred EeCCCcccCcEEEEcCCCeeece
Q 025861 75 VSIYDLVVGDIVHLSIGDQVPAD 97 (247)
Q Consensus 75 v~~~~lv~GDii~v~~G~~iP~D 97 (247)
+...++..+|+..+++||.+|.|
T Consensus 16 Lg~~~itl~ell~L~~Gdvi~L~ 38 (77)
T TIGR02480 16 LGRTRITLGDLLKLGEGSVIELD 38 (77)
T ss_pred EeceEeEHHHHhcCCCCCEEEcC
Confidence 34445556666666777766654
No 86
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=23.95 E-value=3.9e+02 Score=26.69 Aligned_cols=82 Identities=12% Similarity=0.099 Sum_probs=49.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhchhCCCeEEEEECC-eEEEEeCCCcccCc-EEEEcCCCeeeceEEE
Q 025861 24 MYDGLGIILSILLVVMVTAISDYKQSL-QFRDLDREKKKIFIQVTRDG-QRQKVSIYDLVVGD-IVHLSIGDQVPADGIF 100 (247)
Q Consensus 24 ~~~~~~i~~~v~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~v~r~g-~~~~v~~~~lv~GD-ii~v~~G~~iP~D~~v 100 (247)
|.++..+.+.+++..++..+.+.+++. ..+.+++++.. +.. +-..+ .-|. ...+...+..|-|-++
T Consensus 62 ~~~~~~i~~~l~~~vl~~~~~e~~ae~ra~~~~~sL~~l------~~~~~a~vi-----r~g~~~~~V~~~eL~~GDiV~ 130 (679)
T PRK01122 62 AGFNLAITLWLWFTVLFANFAEALAEGRGKAQADSLRGA------KKDTFARKL-----REPGAAEEVPATELRKGDIVL 130 (679)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCCCeEEEE-----ECCCEEEEEEHHHcCCCCEEE
Confidence 445666666677777777777776664 44556665542 211 11222 2344 5677778888888888
Q ss_pred Ee-eCceEEeccccCCC
Q 025861 101 IS-GYSLLIDESSLSGE 116 (247)
Q Consensus 101 ~~-g~~~~vdes~lTGE 116 (247)
++ |+.+-.|=-.+.|+
T Consensus 131 v~~Gd~IPaDG~vieG~ 147 (679)
T PRK01122 131 VEAGEIIPADGEVIEGV 147 (679)
T ss_pred EcCCCEEEEEEEEEEcc
Confidence 76 55555665566664
No 87
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=23.86 E-value=52 Score=25.40 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=12.4
Q ss_pred CCcccCcEEEEcCCCe
Q 025861 78 YDLVVGDIVHLSIGDQ 93 (247)
Q Consensus 78 ~~lv~GDii~v~~G~~ 93 (247)
..++|||||.+..|-.
T Consensus 60 ~~~~PGDIirLt~Gy~ 75 (134)
T KOG3416|consen 60 CLIQPGDIIRLTGGYA 75 (134)
T ss_pred cccCCccEEEecccch
Confidence 5688999999887743
No 88
>cd04451 S1_IF1 S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain. IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the formation of the first peptide bond. In Escherichia coli, the initiation mechanism requires, in addition to mRNA, fMet-tRNA, and ribosomal subunits, the presence of three additional proteins (initiation factors IF1, IF2, and IF3) and at least one GTP molecule. The three initiation factors influence both the kinetics and the stability of ternary complex formation. IF1 is the smallest of the three factors. IF1 enhances the rate of 70S ribosome subunit association and dissociation and the interaction of 30S ribosomal subunit with IF2 and IF3. It stimulates 30S complex formation. In addition, by binding to the A-site of the 30S ribosomal subunit, IF1 may contribute to the fidelity of the selection of the initiation site of th
Probab=23.77 E-value=2e+02 Score=18.78 Aligned_cols=12 Identities=25% Similarity=0.562 Sum_probs=10.2
Q ss_pred CcccCcEEEEcC
Q 025861 79 DLVVGDIVHLSI 90 (247)
Q Consensus 79 ~lv~GDii~v~~ 90 (247)
.+++||.|.+++
T Consensus 40 ~~~vGD~V~~~~ 51 (64)
T cd04451 40 RILPGDRVKVEL 51 (64)
T ss_pred ccCCCCEEEEEE
Confidence 489999999984
No 89
>PF00877 NLPC_P60: NlpC/P60 family; InterPro: IPR000064 The Escherichia coli NLPC/Listeria P60 domain occurs at the C terminus of a number of different bacterial and viral proteins. The viral proteins are either described as tail assembly proteins or Gp19. In bacteria, the proteins are variously described as being putative tail component of prophage, invasin, invasion associated protein, putative lipoprotein, cell wall hydrolase, or putative endopeptidase. The E. coli NLPC/Listeria P60 domain is contained within the boundaries of the cysteine peptidase domain that defines the MEROPS peptidase family C40 (clan C-). A type example being dipeptidyl-peptidase VI from Bacillus sphaericus and gamma-glutamyl-diamino acid-endopeptidase precursor from Lactococcus lactis 3.4.19.11 from EC. This group also contains proteins classified as non-peptidase homologues in that they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases in the C40 family. ; PDB: 3PVQ_B 3GT2_A 3NPF_B 2K1G_A 3I86_A 3S0Q_A 2XIV_A 3PBC_A 3NE0_A 3M1U_B ....
Probab=23.53 E-value=1.1e+02 Score=21.97 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=21.9
Q ss_pred eEEEEeCCCcccCcEEEEcCCCeeeceEEEEeeCc
Q 025861 71 QRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYS 105 (247)
Q Consensus 71 ~~~~v~~~~lv~GDii~v~~G~~iP~D~~v~~g~~ 105 (247)
....++.++++|||++..+. ...+.-.-+.-|+.
T Consensus 43 ~~~~~~~~~~~pGDlif~~~-~~~~~Hvgiy~g~~ 76 (105)
T PF00877_consen 43 FQKRVPISELQPGDLIFFKG-GGGISHVGIYLGDG 76 (105)
T ss_dssp EEEHEEGGG-TTTEEEEEEG-TGGEEEEEEEEETT
T ss_pred cccccchhcCCcccEEEEeC-CccCCEeEEEEeCC
Confidence 33468999999999999998 33334433444544
No 90
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=23.26 E-value=1.5e+02 Score=30.76 Aligned_cols=38 Identities=47% Similarity=0.835 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhHhhccCCccHHHHHHHHhHhhhhhhh
Q 025861 178 VAFQIIIVEFLGALASTVPLSWHLWLLCILIGAVSMPI 215 (247)
Q Consensus 178 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~ia~P~ 215 (247)
+.++++++.+++.++...|+.+..|++++.+....+|+
T Consensus 894 ~~l~~~~~~~~~~~f~~~~l~~~~w~~~~~~~~~~~~~ 931 (941)
T TIGR01517 894 FGFQVIIVEFGGSFFSTVSLSIEQWIGCVLLGMLSLIF 931 (941)
T ss_pred HHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence 33344444455555555566666666665554444444
No 91
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=23.05 E-value=58 Score=19.83 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=17.3
Q ss_pred EEECCeEEEEeCCCcccCcEE
Q 025861 66 VTRDGQRQKVSIYDLVVGDIV 86 (247)
Q Consensus 66 v~r~g~~~~v~~~~lv~GDii 86 (247)
|.-||+...=+...+.+||+|
T Consensus 28 V~VNg~~v~~~~~~v~~~d~I 48 (48)
T PF01479_consen 28 VKVNGKVVKDPSYIVKPGDVI 48 (48)
T ss_dssp EEETTEEESSTTSBESTTEEE
T ss_pred EEECCEEEcCCCCCCCCcCCC
Confidence 567888887788999999986
No 92
>smart00532 LIGANc Ligase N family.
Probab=23.05 E-value=47 Score=31.21 Aligned_cols=25 Identities=32% Similarity=0.586 Sum_probs=19.6
Q ss_pred eCCCcccCcEEEEc-CCCeeec-eEEE
Q 025861 76 SIYDLVVGDIVHLS-IGDQVPA-DGIF 100 (247)
Q Consensus 76 ~~~~lv~GDii~v~-~G~~iP~-D~~v 100 (247)
.-.+|.+||.|.|. +||.||- ++++
T Consensus 359 ~~~~i~iGd~V~V~raGdVIP~I~~vv 385 (441)
T smart00532 359 EEKDIRIGDTVVVRKAGDVIPKVVGVV 385 (441)
T ss_pred HHcCCCCCCEEEEEECCCcCcceeecc
Confidence 46789999999985 8999993 4433
No 93
>COG0522 RpsD Ribosomal protein S4 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=22.97 E-value=72 Score=26.74 Aligned_cols=31 Identities=19% Similarity=0.407 Sum_probs=26.5
Q ss_pred EEEECCeEEEEeCCCcccCcEEEEcCCCeee
Q 025861 65 QVTRDGQRQKVSIYDLVVGDIVHLSIGDQVP 95 (247)
Q Consensus 65 ~v~r~g~~~~v~~~~lv~GDii~v~~G~~iP 95 (247)
.|.-||+...+|+..+.+||.+.|+.-+.-|
T Consensus 120 HI~VnGk~V~iPSy~V~~gdei~V~~k~~s~ 150 (205)
T COG0522 120 HILVNGKRVNIPSYLVSPGDEISVREKSKSP 150 (205)
T ss_pred eEEECCEEeccCcEEecCCCEEEeeecccch
Confidence 4667999999999999999999998766544
No 94
>PRK14701 reverse gyrase; Provisional
Probab=21.92 E-value=81 Score=34.77 Aligned_cols=35 Identities=29% Similarity=0.300 Sum_probs=28.6
Q ss_pred CCeEEEEECCeEEEEeCCCcccCcEEEEcCCCeee
Q 025861 61 KIFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVP 95 (247)
Q Consensus 61 ~~~~~v~r~g~~~~v~~~~lv~GDii~v~~G~~iP 95 (247)
+....+.|||+...++.++|.+||.|.+....-+|
T Consensus 959 dH~~lv~~~g~~~~~~a~~lk~gD~vav~~~~~~~ 993 (1638)
T PRK14701 959 DHGLLVMRDGKLGWVSAKNIREGDYVAFAFNTGVE 993 (1638)
T ss_pred CceEEeecCCceeeEEHHHCCcCCEEEecccCCCC
Confidence 34577889999999999999999999987654444
No 95
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=21.88 E-value=40 Score=33.51 Aligned_cols=26 Identities=35% Similarity=0.572 Sum_probs=20.0
Q ss_pred eCCCcccCcEEEEc-CCCeee-ceEEEE
Q 025861 76 SIYDLVVGDIVHLS-IGDQVP-ADGIFI 101 (247)
Q Consensus 76 ~~~~lv~GDii~v~-~G~~iP-~D~~v~ 101 (247)
.-.+|.+||.|.|. +||.|| .++++.
T Consensus 361 ~~~di~iGD~V~V~raGdVIP~I~~v~~ 388 (669)
T PRK14350 361 DSIGLNVGDVVKISRRGDVIPAVELVIE 388 (669)
T ss_pred HHcCCCCCCEEEEEecCCCCCceeeecc
Confidence 45688899999985 899999 445443
No 96
>COG4854 Predicted membrane protein [Function unknown]
Probab=21.82 E-value=3.6e+02 Score=20.43 Aligned_cols=44 Identities=11% Similarity=0.150 Sum_probs=22.0
Q ss_pred chhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEE
Q 025861 23 GMYDGLGIILS--ILLVVMVTAISDYKQSLQFRDLDREKKKIFIQV 66 (247)
Q Consensus 23 ~~~~~~~i~~~--v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v 66 (247)
+|+.+++.++. ..+..+-+...+.-++.+..+..+..+..+..|
T Consensus 30 n~~iav~af~ag~~~l~l~k~Rv~~vvEDER~lrvse~aSr~TiqV 75 (126)
T COG4854 30 NWFIAVIAFFAGAALLSLVKRRVDEVVEDERTLRVSERASRRTIQV 75 (126)
T ss_pred CeehHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhheeEEE
Confidence 68877777665 223334444444445555444444444333333
No 97
>COG4013 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.79 E-value=1.6e+02 Score=21.09 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=20.4
Q ss_pred CCcccCcEEEEcCCCeeeceEEEEeeCc
Q 025861 78 YDLVVGDIVHLSIGDQVPADGIFISGYS 105 (247)
Q Consensus 78 ~~lv~GDii~v~~G~~iP~D~~v~~g~~ 105 (247)
+++.+||.+.+.-| ++-..|.++..++
T Consensus 19 eeV~~gd~vel~~g-rVhIpG~vv~~n~ 45 (91)
T COG4013 19 EEVDVGDYVELYFG-RVHIPGRVVHYND 45 (91)
T ss_pred hcCCCCCEEEEEEE-EEEeccEEEEeec
Confidence 47889999999888 6666777776554
No 98
>CHL00113 rps4 ribosomal protein S4; Reviewed
Probab=21.64 E-value=96 Score=25.90 Aligned_cols=27 Identities=15% Similarity=0.242 Sum_probs=22.3
Q ss_pred EEEECCeEEEEeCCCcccCcEEEEcCC
Q 025861 65 QVTRDGQRQKVSIYDLVVGDIVHLSIG 91 (247)
Q Consensus 65 ~v~r~g~~~~v~~~~lv~GDii~v~~G 91 (247)
.|.-||+....++..+.+||.|.++.-
T Consensus 115 ~V~VNGk~v~~ps~~Vk~GD~I~V~~~ 141 (201)
T CHL00113 115 HILVNGRIVDIPSYRCKPKDIITVKDK 141 (201)
T ss_pred cEEECCEEecCccccCCCCCEEEEccc
Confidence 355689888899999999999998643
No 99
>PRK08097 ligB NAD-dependent DNA ligase LigB; Reviewed
Probab=21.55 E-value=53 Score=31.89 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=18.3
Q ss_pred CCCcccCcEEEE-cCCCeeec-eEEE
Q 025861 77 IYDLVVGDIVHL-SIGDQVPA-DGIF 100 (247)
Q Consensus 77 ~~~lv~GDii~v-~~G~~iP~-D~~v 100 (247)
-.+|.+||.|.| ++||.||. .+++
T Consensus 357 ~~~I~iGD~V~V~raGdVIP~I~~vv 382 (562)
T PRK08097 357 QWDIAPGDQVLVSLAGQGIPRLDKVV 382 (562)
T ss_pred HcCCCCCCEEEEEecCCCCcceeeee
Confidence 568899998887 58999994 3433
No 100
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=21.51 E-value=86 Score=28.46 Aligned_cols=28 Identities=29% Similarity=0.273 Sum_probs=19.2
Q ss_pred eEEEEECCeEEEEeCCCcccCcEEEEcCC
Q 025861 63 FIQVTRDGQRQKVSIYDLVVGDIVHLSIG 91 (247)
Q Consensus 63 ~~~v~r~g~~~~v~~~~lv~GDii~v~~G 91 (247)
++++.+++. ..++..+|+|||.|++...
T Consensus 300 tIrlv~~dG-~~vsVt~Lk~GD~VL~~~~ 327 (344)
T PRK02290 300 TIRLVTPDG-KPVSVVDLKPGDEVLGYLE 327 (344)
T ss_pred EEEEECCCC-CEeeeeecCCCCEEEEEec
Confidence 344444322 4789999999999998653
No 101
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=21.49 E-value=3.2e+02 Score=19.62 Aligned_cols=41 Identities=29% Similarity=0.471 Sum_probs=26.3
Q ss_pred eeceEEEEe-eCceEEeccccCCCCcceeecCCCCEEE---ecceEeec
Q 025861 94 VPADGIFIS-GYSLLIDESSLSGESEPMYICDENPFLL---AGTKVQDG 138 (247)
Q Consensus 94 iP~D~~v~~-g~~~~vdes~lTGEs~pv~k~~~~~~v~---~Gt~~~~g 138 (247)
-|.-|.++. |.. ..++ +|+..|...+.||..+| +|+.+..+
T Consensus 33 k~~~g~VvAVG~g-~~~~---~g~~~~~~vk~GD~Vl~~~~~g~~v~~~ 77 (93)
T cd00320 33 KPQEGKVVAVGPG-RRNE---NGERVPLSVKVGDKVLFPKYAGTEVKLD 77 (93)
T ss_pred CceEEEEEEECCC-eECC---CCCCccccccCCCEEEECCCCceEEEEC
Confidence 455666665 344 3455 68888988889998663 45555443
No 102
>COG1261 FlgA Flagellar basal body P-ring biosynthesis protein [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=21.45 E-value=2.5e+02 Score=23.83 Aligned_cols=65 Identities=26% Similarity=0.298 Sum_probs=37.0
Q ss_pred EeCCCcccCcEE---------EEcCCCeeec----eEEEEeeCceEEeccccCCCCcceeecCCCCEEEecceEeeceEE
Q 025861 75 VSIYDLVVGDIV---------HLSIGDQVPA----DGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVK 141 (247)
Q Consensus 75 v~~~~lv~GDii---------~v~~G~~iP~----D~~v~~g~~~~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~g~~~ 141 (247)
+.-++|.||+.+ .|+.|+.||. ||+-++... .-=+.---||.+-|.-....+ +.+|+...+|.+.
T Consensus 140 vskr~l~pg~~i~~~~lr~~~lV~rg~~V~~v~~~ggi~i~~~g-~aL~nga~Ge~IrVrn~~Sgk-Ivsg~V~~~G~v~ 217 (220)
T COG1261 140 VSKRTLLPGQPILASMLRQAWLVKRGQIVTVVAEGGGISITAEG-KALENGAVGEVIRVRNVSSGK-IVSGTVDGDGTVQ 217 (220)
T ss_pred HhhhccCCCCEecHHHhccceeEecCCEEEEEEeCCCEEEEEee-eEccCccccceEEEecCCCCc-eEEEEEccCCeEE
Confidence 445667777766 4677777763 444443333 222344446666554444355 8888877666654
No 103
>PF13403 Hint_2: Hint domain
Probab=21.27 E-value=83 Score=24.72 Aligned_cols=26 Identities=31% Similarity=0.235 Sum_probs=21.0
Q ss_pred EEeCCCcccCcEEEEcCCCeeeceEE
Q 025861 74 KVSIYDLVVGDIVHLSIGDQVPADGI 99 (247)
Q Consensus 74 ~v~~~~lv~GDii~v~~G~~iP~D~~ 99 (247)
.+++++|.+||.|.=..|..-|+=-+
T Consensus 15 ~~~Ve~L~~GD~V~T~dgg~~~V~wi 40 (147)
T PF13403_consen 15 PRPVEDLRPGDRVLTRDGGFQPVRWI 40 (147)
T ss_pred CeEeeccCCCCEEEecCCCEEEEEEE
Confidence 46889999999999998887775433
No 104
>PRK08983 fliN flagellar motor switch protein; Validated
Probab=21.26 E-value=42 Score=25.93 Aligned_cols=59 Identities=19% Similarity=0.273 Sum_probs=36.3
Q ss_pred EEEeCCCcccCcEEEEcCCCeeeceEEEEeeCceEEeccccCCCCcceeecCCCCEEEecceEee-ceEEEEEEEe
Q 025861 73 QKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQD-GSVKMLVTTV 147 (247)
Q Consensus 73 ~~v~~~~lv~GDii~v~~G~~iP~D~~v~~g~~~~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~-g~~~~~V~~~ 147 (247)
..+...++..+|++.+++||.||.|-.. ..|+.-..++...|.|..... +..=++++..
T Consensus 57 v~LG~t~ltl~dlL~L~~GDVI~Ld~~~----------------ddpv~v~Vng~~~f~G~~G~~~~k~AVrI~~i 116 (127)
T PRK08983 57 MEVGRSFISIRNLLQLNQGSVVELDRVA----------------GEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDV 116 (127)
T ss_pred EEEecCcccHHHHhCCCCCCEEEeCCCC----------------CCCEEEEECCEEEEEEEEEEECCEEEEEEEEc
Confidence 4566778888888888888888865322 113333344445777776654 4444555543
No 105
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=20.86 E-value=8.1e+02 Score=24.70 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=20.0
Q ss_pred CcEEEEcCCCeeeceEEEEe-eCceEEeccccCCC
Q 025861 83 GDIVHLSIGDQVPADGIFIS-GYSLLIDESSLSGE 116 (247)
Q Consensus 83 GDii~v~~G~~iP~D~~v~~-g~~~~vdes~lTGE 116 (247)
|....+...|.+|-|-+.++ |+.+-.|--.+.|+
T Consensus 100 g~~~~I~~~~Lv~GDiV~l~~Gd~IPaDg~vi~g~ 134 (755)
T TIGR01647 100 GKWQEIPASELVPGDVVRLKIGDIVPADCRLFEGD 134 (755)
T ss_pred CEEEEEEhhhCcCCCEEEECCCCEEeceEEEEecC
Confidence 55666667777777777665 34444454444444
No 106
>PRK05327 rpsD 30S ribosomal protein S4; Validated
Probab=20.61 E-value=1.1e+02 Score=25.52 Aligned_cols=27 Identities=15% Similarity=0.452 Sum_probs=22.8
Q ss_pred EEEECCeEEEEeCCCcccCcEEEEcCC
Q 025861 65 QVTRDGQRQKVSIYDLVVGDIVHLSIG 91 (247)
Q Consensus 65 ~v~r~g~~~~v~~~~lv~GDii~v~~G 91 (247)
.|.-||+....++..+.+||.|.++..
T Consensus 119 ~V~VNgk~v~~ps~~v~~GD~I~v~~~ 145 (203)
T PRK05327 119 HILVNGKKVNIPSYRVKPGDVIEVREK 145 (203)
T ss_pred cEEECCEEECCCCcCCCCCCEEEECCc
Confidence 466688888889999999999999864
No 107
>TIGR01017 rpsD_bact ribosomal protein S4, bacterial/organelle type. This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4.
Probab=20.55 E-value=90 Score=25.94 Aligned_cols=27 Identities=19% Similarity=0.479 Sum_probs=22.1
Q ss_pred EEEECCeEEEEeCCCcccCcEEEEcCC
Q 025861 65 QVTRDGQRQKVSIYDLVVGDIVHLSIG 91 (247)
Q Consensus 65 ~v~r~g~~~~v~~~~lv~GDii~v~~G 91 (247)
.|.-||+....++..+.+||+|.+..-
T Consensus 116 ~V~VNgk~v~~ps~~V~~GD~I~V~~~ 142 (200)
T TIGR01017 116 HILVNGKKVDIPSYQVRPGDIISIKEK 142 (200)
T ss_pred CEEECCEEeCCCCCCCCCCCEEEEeeC
Confidence 355688888889999999999998743
No 108
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=20.48 E-value=1.2e+02 Score=29.74 Aligned_cols=26 Identities=31% Similarity=0.472 Sum_probs=21.6
Q ss_pred CCCcccCcEEEEcCCCeee--ceEEEEe
Q 025861 77 IYDLVVGDIVHLSIGDQVP--ADGIFIS 102 (247)
Q Consensus 77 ~~~lv~GDii~v~~G~~iP--~D~~v~~ 102 (247)
...+.+|.-+.+..|..+| ||+++-.
T Consensus 277 ~~~l~~G~avrI~TGa~iP~gaDaVV~~ 304 (597)
T PRK14491 277 DGTLQAGEAVRIMTGAPVPAGADTVVMR 304 (597)
T ss_pred CcccCCCcEEEeCcCCCCCCCCCEEEEE
Confidence 3467888899999999999 8998864
No 109
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=20.40 E-value=1.2e+02 Score=28.30 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=21.7
Q ss_pred CCCcccCcEEEEcCCCeee--ceEEEEe
Q 025861 77 IYDLVVGDIVHLSIGDQVP--ADGIFIS 102 (247)
Q Consensus 77 ~~~lv~GDii~v~~G~~iP--~D~~v~~ 102 (247)
...+.+|.-+.+..|..+| ||+++-.
T Consensus 103 ~~~~~~G~av~I~TGa~lP~gaDaVV~~ 130 (419)
T PRK14690 103 SGRVPEGMALRILTGAALPEGVDTVVLE 130 (419)
T ss_pred CcccCCCcEEEEcCCCCCCCCCCEEEEE
Confidence 3467888899999999999 8998864
No 110
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=20.28 E-value=4.1e+02 Score=20.99 Aligned_cols=69 Identities=20% Similarity=0.138 Sum_probs=35.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hchhCCCeEEEEECCeEEEEeCCCcccCcEEEEc
Q 025861 21 PEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDL----DREKKKIFIQVTRDGQRQKVSIYDLVVGDIVHLS 89 (247)
Q Consensus 21 ~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~v~r~g~~~~v~~~~lv~GDii~v~ 89 (247)
..-|-|-..|++++++....-.+.+|++.+...+- ........-.---+-+...+.+..+.-|-+|.++
T Consensus 43 ~tKyRDL~II~~L~ll~l~giq~~~y~~~~~~~~q~~~~~~fi~~vA~~~~V~~~~v~VNst~l~dG~iVki~ 115 (149)
T PF11694_consen 43 DTKYRDLSIIALLLLLLLIGIQYSDYQQNQNQHSQSSQMVHFIESVAKDLGVSKEEVYVNSTALTDGMIVKIG 115 (149)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHhCCChheEEEecccccCCeEEEEC
Confidence 34577766666655554444556666555433221 1111100000011234567888888888777777
No 111
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=20.21 E-value=3.2e+02 Score=19.24 Aligned_cols=11 Identities=18% Similarity=0.114 Sum_probs=4.4
Q ss_pred HHHHHHHHHHh
Q 025861 46 YKQSLQFRDLD 56 (247)
Q Consensus 46 ~~~~~~~~~l~ 56 (247)
.+++++.+++.
T Consensus 25 kK~~k~~~~m~ 35 (84)
T TIGR00739 25 RKRRKAHKKLI 35 (84)
T ss_pred HHHHHHHHHHH
Confidence 33344444443
Done!