Query 025861
Match_columns 247
No_of_seqs 231 out of 1973
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 19:14:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025861.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025861hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rfu_A Copper efflux ATPase; a 100.0 7.4E-39 2.5E-43 311.0 10.1 233 1-238 154-407 (736)
2 3j09_A COPA, copper-exporting 100.0 1.3E-37 4.6E-42 302.6 12.2 235 1-240 150-393 (723)
3 3j08_A COPA, copper-exporting 100.0 4.2E-38 1.5E-42 302.5 8.1 232 1-238 72-313 (645)
4 1mhs_A Proton pump, plasma mem 100.0 1E-36 3.5E-41 301.4 14.2 202 23-227 140-347 (920)
5 2zxe_A Na, K-ATPase alpha subu 100.0 1.5E-35 5.3E-40 297.4 12.9 220 3-227 109-350 (1028)
6 3ixz_A Potassium-transporting 100.0 2.1E-34 7E-39 289.5 16.9 220 3-227 114-355 (1034)
7 3ar4_A Sarcoplasmic/endoplasmi 100.0 1.8E-34 6.1E-39 289.1 14.2 222 3-226 66-320 (995)
8 3b8c_A ATPase 2, plasma membra 100.0 2.3E-36 7.8E-41 298.5 -7.7 219 3-228 73-299 (885)
9 2hc8_A PACS, cation-transporti 100.0 2.1E-32 7E-37 207.5 8.9 111 51-164 2-112 (113)
10 2kij_A Copper-transporting ATP 100.0 8.2E-32 2.8E-36 207.5 6.9 117 45-164 2-124 (124)
11 2jmz_A Hypothetical protein MJ 86.4 0.91 3.1E-05 36.0 4.9 36 62-97 103-138 (186)
12 2lcj_A PAB POLC intein; hydrol 80.7 1.9 6.3E-05 34.2 4.5 36 60-95 91-126 (185)
13 1at0_A 17-hedgehog; developmen 61.0 10 0.00035 28.6 4.4 32 60-91 70-103 (145)
14 2z1c_A Hydrogenase expression/ 55.2 24 0.00081 23.7 4.9 33 62-94 15-50 (75)
15 2k1g_A Lipoprotein SPR; soluti 43.8 8.3 0.00028 28.9 1.3 21 73-93 61-81 (135)
16 4e2u_A PHO RADA intein; HINT-f 43.6 16 0.00056 28.1 3.1 28 63-91 98-125 (168)
17 2cw8_A Endonuclease PI-pkoii; 43.1 27 0.00094 32.1 5.0 29 61-89 95-123 (537)
18 2jyx_A Lipoprotein SPR; soluti 33.8 21 0.00072 26.5 2.2 21 73-93 61-81 (136)
19 3ixz_A Potassium-transporting 31.8 33 0.0011 34.3 3.8 60 34-103 146-205 (1034)
20 2ot2_A Hydrogenase isoenzymes 31.5 54 0.0018 22.7 3.8 32 63-94 16-56 (90)
21 3jxo_A TRKA-N domain protein; 28.7 58 0.002 21.3 3.6 25 64-89 44-70 (86)
22 1wu2_A MOEA protein, molybdopt 27.7 53 0.0018 29.0 4.1 29 77-105 92-122 (396)
23 1uz5_A MOEA protein, 402AA lon 27.3 50 0.0017 29.2 3.9 28 77-104 90-119 (402)
24 2j58_A WZA, outer membrane lip 27.2 32 0.0011 30.0 2.6 30 62-91 191-232 (359)
25 3p42_A Predicted protein; beta 26.2 54 0.0018 26.8 3.6 31 62-92 166-204 (236)
26 2e6z_A Transcription elongatio 25.8 34 0.0012 21.5 1.8 27 77-103 5-31 (59)
27 3sgi_A DNA ligase; HET: DNA AM 25.1 23 0.00077 33.5 1.2 27 75-101 374-402 (615)
28 3gt2_A Putative uncharacterize 24.1 30 0.001 25.8 1.5 19 73-91 83-101 (142)
29 1am2_A MXE GYRA intein; protei 23.9 83 0.0028 24.7 4.2 30 62-91 76-109 (199)
30 3ne0_A Resuscitation promoting 23.6 1.3E+02 0.0044 24.2 5.3 19 73-91 152-170 (214)
31 2gpr_A Glucose-permease IIA co 22.8 61 0.0021 24.7 3.1 53 83-136 35-108 (154)
32 3pbi_A Invasion protein; pepti 22.4 33 0.0011 27.8 1.5 19 73-91 152-170 (214)
33 3kmh_A D-lyxose isomerase; cup 21.6 1.3E+02 0.0044 24.8 4.9 27 63-94 156-182 (246)
34 1d1n_A Initiation factor 2; be 21.4 1.1E+02 0.0038 21.5 4.0 14 77-90 79-92 (99)
35 4glx_A DNA ligase; inhibitor, 20.3 30 0.001 32.5 0.9 25 77-101 366-392 (586)
36 2if6_A Hypothetical protein YI 20.3 50 0.0017 25.6 2.2 16 77-92 2-17 (186)
37 2in0_A Endonuclease PI-MTUI; h 20.0 50 0.0017 24.1 2.0 19 74-92 81-99 (139)
No 1
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=100.00 E-value=7.4e-39 Score=311.01 Aligned_cols=233 Identities=20% Similarity=0.253 Sum_probs=183.3
Q ss_pred CchhhHHHHHHHHhhhcC----------CCCCchhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEE-
Q 025861 1 MKVSANVIYLSGVGLATE----------GWPEGMYDGLGII-LSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTR- 68 (247)
Q Consensus 1 lgl~~a~~~s~~~~~~~~----------~~~~~~~~~~~i~-~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r- 68 (247)
+|+.+|+++|++..+... +....|||+++++ ++++++.+++...+.++++.+++|.++.++ +++++|
T Consensus 154 l~~~~a~~~S~~~~~~~~~~~~~~~~~~~~~~~yfe~a~~ii~~~llg~~le~~a~~~~~~ai~~L~~l~p~-~a~vv~~ 232 (736)
T 3rfu_A 154 MGIGVAWIYSMVAVLWPGVFPHAFRSQEGVVAVYFEAAAVITTLVLLGQVLELKAREQTGSAIRALLKLVPE-SAHRIKE 232 (736)
T ss_dssp HHHHHHHHHHHHHHHCGGGSCSSSSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHTCCCCC-EEEEEET
T ss_pred HHHHHHHHHHHHHHhcccccccccccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEEec
Confidence 467788888887665311 1234688887555 668888999999999999999999998885 777777
Q ss_pred CCeEEEEeCCCcccCcEEEEcCCCeeeceEEEEeeCceEEeccccCCCCcceeecCCCCEEEecceEeeceEEEEEEEec
Q 025861 69 DGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVG 148 (247)
Q Consensus 69 ~g~~~~v~~~~lv~GDii~v~~G~~iP~D~~v~~g~~~~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~g~~~~~V~~~g 148 (247)
||++++|++++|+|||+|.+++||+|||||++++|++ .||||+|||||.|+.|++++. +|+||.|.+|.++++|+++|
T Consensus 233 dg~~~~v~~~~l~~GDiv~v~~Ge~IPaDg~vl~G~~-~VDES~LTGES~Pv~K~~gd~-v~~Gt~~~~G~~~~~v~~~G 310 (736)
T 3rfu_A 233 DGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRS-FVDESMVTGEPIPVAKEASAK-VIGATINQTGSFVMKALHVG 310 (736)
T ss_dssp TEEEEEEETTTCCTTCEECCCSSEECCSCEEECSSCE-EEECSSSTTCSSCEEECTTCE-ECTTCEEESCCCCEEECCCS
T ss_pred CCEEEEEEHhhCCCCCEEEECCCCcccccEEEEECce-EeeecccCCccccEEeccCCc-CCCceEeccceEEEEEEEec
Confidence 9999999999999999999999999999999999998 799999999999999999998 99999999999999999999
Q ss_pred cccccchhhhhhccccccchh-------HHHHHHHHHHHHHHHHHHHhHhhccCCccHHHH-HHHHhHhhhhhhheeeec
Q 025861 149 MRTEWGKLMETLNEGMFDSWL-------FVGILVLTVAFQIIIVEFLGALASTVPLSWHLW-LLCILIGAVSMPIAVVIK 220 (247)
Q Consensus 149 ~~T~~~~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~il~ia~P~Al~l~ 220 (247)
.+|.++||.+++++++.+|++ +..+++.+++++.++.++++++.. ....|..+ ..++.+++++|||||.++
T Consensus 311 ~~T~l~~I~~lv~~a~~~k~~~q~~~d~~a~~~v~~vl~ia~~~~~~w~~~~-~~~~~~~~l~~ai~vlviacPcaL~la 389 (736)
T 3rfu_A 311 SDTMLARIVQMVSDAQRSRAPIQRLADTVSGWFVPAVILVAVLSFIVWALLG-PQPALSYGLIAAVSVLIIACPCALGLA 389 (736)
T ss_dssp TTSHHHHHHHHHHHHHSSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-SSSSTTHHHHHHHHHHHHHCCSTHHHH
T ss_pred hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCchHHHHHHHHHHhHHHhhhhHHHHH
Confidence 999999999999988777653 444555444444444444443332 22223334 444568999999999999
Q ss_pred ccccCCCCcccc-ccccee
Q 025861 221 CIPVKKSEPKLQ-HHDGYE 238 (247)
Q Consensus 221 ~~P~a~~~~~~~-~~~~~~ 238 (247)
+|++...+... ..+++.
T Consensus 390 -~p~a~~~~~~~~a~~gil 407 (736)
T 3rfu_A 390 -TPMSIMVGVGKGAQSGVL 407 (736)
T ss_dssp -HHHHHHHHHHHHHHTTEE
T ss_pred -HHHHHHHHHHHHhhccee
Confidence 99875544333 334443
No 2
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.3e-37 Score=302.55 Aligned_cols=235 Identities=22% Similarity=0.235 Sum_probs=175.9
Q ss_pred CchhhHHHHHHHHhhhcCCCCCchhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEECCeEEEEeCCC
Q 025861 1 MKVSANVIYLSGVGLATEGWPEGMYDGLG-IILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVSIYD 79 (247)
Q Consensus 1 lgl~~a~~~s~~~~~~~~~~~~~~~~~~~-i~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g~~~~v~~~~ 79 (247)
+|+..|+++|++..+........||++.. ++++++++.+++...+.++++.++++.++.++ +++|+|||++++|+++|
T Consensus 150 l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~le~~~~~~~~~~i~~l~~l~~~-~a~v~r~g~~~~i~~~~ 228 (723)
T 3j09_A 150 MGVGAAFLASVLSTAGVLPREYSFYETSVLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAK-TAVVIRDGKEIAVPVEE 228 (723)
T ss_dssp CHHHHHHHHHHHHHHTTTTCCCCCCTTHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHTSCS-EEEEEETTEEEEEEGGG
T ss_pred HHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-eeEEEECCEEEEEEHHH
Confidence 45677788886654432221122666555 44457778888888888888888888888874 89999999999999999
Q ss_pred cccCcEEEEcCCCeeeceEEEEeeCceEEeccccCCCCcceeecCCCCEEEecceEeeceEEEEEEEeccccccchhhhh
Q 025861 80 LVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMET 159 (247)
Q Consensus 80 lv~GDii~v~~G~~iP~D~~v~~g~~~~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~g~~~~~V~~~g~~T~~~~i~~~ 159 (247)
|+|||+|.+++||+|||||++++|++ .||||+|||||.|+.|++++. +|+||.|.+|.++++|+++|.+|.++|+.++
T Consensus 229 l~~GDiv~v~~Ge~IPaDg~vl~G~~-~VdeS~LTGES~pv~K~~g~~-v~~Gt~~~~g~~~~~v~~~g~~T~l~~i~~l 306 (723)
T 3j09_A 229 VAVGDIVIVRPGEKIPVDGVVVEGES-YVDESMISGEPVPVLKSKGDE-VFGATINNTGVLKIRATRVGGETLLAQIVKL 306 (723)
T ss_dssp CCTTCEEEECTTCBCCSEEEEEECCE-EEECHHHHCCSSCEEECTTCE-ECTTCEECSSCEEEEEEECGGGSHHHHHHHH
T ss_pred CCCCCEEEECCCCEEeeEEEEEECCe-EEecccccCCCcceeecCCCe-eccceEEecCcEEEEEEEecCccHHHHHHHH
Confidence 99999999999999999999999998 799999999999999999997 9999999999999999999999999999999
Q ss_pred hccccccchhHHHHHHHHHHHHHHHH------HHHhHhhccCCccHH-HHHHHHhHhhhhhhheeeecccccCCCCcccc
Q 025861 160 LNEGMFDSWLFVGILVLTVAFQIIIV------EFLGALASTVPLSWH-LWLLCILIGAVSMPIAVVIKCIPVKKSEPKLQ 232 (247)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~-~~~~~~~il~ia~P~Al~l~~~P~a~~~~~~~ 232 (247)
+++++.+++++.+....+...++.++ .++.+.... ...|. .+...+.+++++|||||.++ +|++...+...
T Consensus 307 v~~a~~~k~~~~~~~d~~~~~~~~~vl~~a~~~~~~~~~~~-~~~~~~~~~~~i~vlvia~P~aL~la-~p~a~~~~~~~ 384 (723)
T 3j09_A 307 VEDAMGSKPPIQRLADKVVAYFIPTVLLVAISAFIYWYFIA-HAPLLFAFTTLIAVLVVACPCAFGLA-TPTALTVGMGK 384 (723)
T ss_dssp HSSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSST-TCTTCCSHHHHHHHHHHHSCTTHHHH-HHHHHHHHHHH
T ss_pred HHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHH
Confidence 99998888765443322222211111 111111111 11122 23344568999999999999 99886554433
Q ss_pred -cccceeec
Q 025861 233 -HHDGYEEI 240 (247)
Q Consensus 233 -~~~~~~~~ 240 (247)
..+++..+
T Consensus 385 ~a~~gilvk 393 (723)
T 3j09_A 385 GAELGILIK 393 (723)
T ss_dssp HHTTTCEES
T ss_pred HHHCCeEEe
Confidence 34444443
No 3
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=100.00 E-value=4.2e-38 Score=302.55 Aligned_cols=232 Identities=22% Similarity=0.268 Sum_probs=173.9
Q ss_pred CchhhHHHHHHHHhhhcCCCCCchhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEECCeEEEEeCCC
Q 025861 1 MKVSANVIYLSGVGLATEGWPEGMYDGLG-IILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVSIYD 79 (247)
Q Consensus 1 lgl~~a~~~s~~~~~~~~~~~~~~~~~~~-i~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g~~~~v~~~~ 79 (247)
+|+..|+++|++..+........||++.. ++++++++.+++...+.++++.++++.++.++ +++|+|||++++|+++|
T Consensus 72 l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~le~~~~~~~~~~l~~l~~l~~~-~a~v~r~g~~~~i~~~~ 150 (645)
T 3j08_A 72 MGVGAAFLASVLSTAGVLPREYSFYETSVLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAK-TAVVIRDGKEIAVPVEE 150 (645)
T ss_dssp CHHHHHHHHHHHHHHHHCCSCSSCCCSHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHTSCS-EEEEEETTEEEEEEGGG
T ss_pred HHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-EEEEEECCEEEEEEHHH
Confidence 46677888887654432221122666554 44446777888888888888888888888874 89999999999999999
Q ss_pred cccCcEEEEcCCCeeeceEEEEeeCceEEeccccCCCCcceeecCCCCEEEecceEeeceEEEEEEEeccccccchhhhh
Q 025861 80 LVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMET 159 (247)
Q Consensus 80 lv~GDii~v~~G~~iP~D~~v~~g~~~~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~g~~~~~V~~~g~~T~~~~i~~~ 159 (247)
|+|||+|.+++||+|||||++++|++ .||||+|||||.|+.|++++. +|+||.|.+|.++++|+++|.+|.++|+.++
T Consensus 151 l~~GDiv~v~~Ge~IPaDg~vl~G~~-~VdeS~LTGES~Pv~K~~g~~-v~~Gt~~~~g~~~~~v~~~G~~T~l~~i~~l 228 (645)
T 3j08_A 151 VAVGDIVIVRPGEKIPVDGVVVEGES-YVDESMISGEPVPVLKSKGDE-VFGATINNTGVLKIRATRVGGETLLAQIVKL 228 (645)
T ss_dssp CCTTCEEEECTTCBCCSEEEEEECCE-EEECHHHHCCSSCEEECTTCE-ECTTCEECSSCEEEEEEECGGGSHHHHHHHH
T ss_pred CCCCCEEEECCCCEEeeEEEEEECcE-EEEcccccCCCCceecCCCCE-eeccEEEecCcEEEEEEEcCCccHHHHHHHH
Confidence 99999999999999999999999998 799999999999999999997 9999999999999999999999999999999
Q ss_pred hccccccchhHHHH-------HHHHHHHHHHHHHHHhHhhc-cCCccHHHHHHHHhHhhhhhhheeeecccccCCCCccc
Q 025861 160 LNEGMFDSWLFVGI-------LVLTVAFQIIIVEFLGALAS-TVPLSWHLWLLCILIGAVSMPIAVVIKCIPVKKSEPKL 231 (247)
Q Consensus 160 ~~~~~~~~~~~~~~-------~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~il~ia~P~Al~l~~~P~a~~~~~~ 231 (247)
+++++.+++++.+. ++..+++.+++ .++.+... ..++. ..+...+.+++++|||||.++ +|++...+..
T Consensus 229 v~~a~~~k~~~~~~~d~~~~~~~~~vl~~a~~-~~~~~~~~~~~~~~-~~~~~~i~vlvia~P~aL~la-~p~a~~~~~~ 305 (645)
T 3j08_A 229 VEDAMGSKPPIQRLADKVVAYFIPTVLLVAIS-AFIYWYFIAHAPLL-FAFTTLIAVLVVACPCAFGLA-TPTALTVGMG 305 (645)
T ss_dssp HSCCCCCCCSHHHHHHHHHHHHHHHHHHHHHH-HHHCSSCCCSCSCC-CTTTTTHHHHHHHSCTTHHHH-HHHHHHHHHH
T ss_pred HHHhhccCChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCcHH-HHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHH
Confidence 99998887654432 22222222222 22222211 11111 122334568999999999999 9987665443
Q ss_pred c-ccccee
Q 025861 232 Q-HHDGYE 238 (247)
Q Consensus 232 ~-~~~~~~ 238 (247)
. .++++.
T Consensus 306 ~~a~~gil 313 (645)
T 3j08_A 306 KGAELGIL 313 (645)
T ss_dssp HHHTTCCC
T ss_pred HHHHCCeE
Confidence 3 334443
No 4
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Probab=100.00 E-value=1e-36 Score=301.39 Aligned_cols=202 Identities=21% Similarity=0.264 Sum_probs=161.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEECCeEEEEeCCCcccCcEEEEcCCCeeeceEEEEe
Q 025861 23 GMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFIS 102 (247)
Q Consensus 23 ~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g~~~~v~~~~lv~GDii~v~~G~~iP~D~~v~~ 102 (247)
.|.++..++++++++..++.++++++++.+++|+++.+ .+++|+|||++++|+++||+|||+|.+++||+|||||++++
T Consensus 140 ~~~~~~~i~~vv~i~~~i~~~qe~~a~~a~~~L~~l~~-~~a~V~RdG~~~~I~~~eLv~GDiV~l~~Gd~VPaDg~ll~ 218 (920)
T 1mhs_A 140 DWVDFGVICGLLLLNAVVGFVQEFQAGSIVDELKKTLA-LKAVVLRDGTLKEIEAPEVVPGDILQVEEGTIIPADGRIVT 218 (920)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCC-SSCEEECSSSEEECCTTTSCTTSEEEECTTCBCSSEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-CEEEEEECCEEEEEEHHHcCCCCEEEeCCCCccccceEEEe
Confidence 67888888888888999999999999999999988776 48999999999999999999999999999999999999999
Q ss_pred eCc-eEEeccccCCCCcceeecCCCCEEEecceEeeceEEEEEEEeccccccchhhhhhccccccchhHHHHHHHH---H
Q 025861 103 GYS-LLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGMFDSWLFVGILVLT---V 178 (247)
Q Consensus 103 g~~-~~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~g~~~~~V~~~g~~T~~~~i~~~~~~~~~~~~~~~~~~~~~---~ 178 (247)
|++ +.||||+|||||.|+.|++++. +|+||.|.+|.+.++|++||.+|.+||+.+++++++.+++++...+..+ +
T Consensus 219 g~~~l~VDES~LTGES~PV~K~~gd~-v~sGT~v~~G~~~~~V~~tG~~T~~g~I~~lv~~a~~~~~~l~~~~~~i~~~l 297 (920)
T 1mhs_A 219 DDAFLQVDQSALTGESLAVDKHKGDQ-VFASSAVKRGEAFVVITATGDNTFVGRAAALVNAASGGSGHFTEVLNGIGTIL 297 (920)
T ss_dssp ESSCCEEBCTTTSSCCCCEECCSSCE-ECSCBCCSCCCEEEEEEECSTTCSTTTTTSSCCCCCCCCCHHHHHHHHHHHHH
T ss_pred cCceeeeeccccCCCCcceEecCCCe-eecCceEecceEEEEEEEeCCcCHHHHHHHHHhhcccCCchHHHHHHHHHHHH
Confidence 985 7899999999999999999986 9999999999999999999999999999999998877776654322211 1
Q ss_pred HHHHHHHHHHhHhhcc-CCccHHHHHH-HHhHhhhhhhheeeecccccCCC
Q 025861 179 AFQIIIVEFLGALAST-VPLSWHLWLL-CILIGAVSMPIAVVIKCIPVKKS 227 (247)
Q Consensus 179 ~~~~~i~~~~~~~~~~-~~~~~~~~~~-~~~il~ia~P~Al~l~~~P~a~~ 227 (247)
....+++.++.+.... ....|..++. .+.+++++|||||.++ +|++..
T Consensus 298 ~~~~~~~~~i~~~~~~~~~~~~~~~l~~av~llV~aiP~aLp~~-vti~la 347 (920)
T 1mhs_A 298 LILVIFTLLIVWVSSFYRSNPIVQILEFTLAITIIGVPVGLPAV-VTTTMA 347 (920)
T ss_dssp HHHHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHHHSCCCHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHH-HHHHHH
Confidence 1111111111111111 1123444444 4457889999999999 887653
No 5
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A
Probab=100.00 E-value=1.5e-35 Score=297.43 Aligned_cols=220 Identities=21% Similarity=0.223 Sum_probs=175.3
Q ss_pred hhhHHHHHHHHhhhc---CC--CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEECCeEEEEeC
Q 025861 3 VSANVIYLSGVGLAT---EG--WPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVSI 77 (247)
Q Consensus 3 l~~a~~~s~~~~~~~---~~--~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g~~~~v~~ 77 (247)
+++++++|++++.+. +. +..+|++++.++++++++..++.++++++++.++++.++.+ .+++|+|||++++|++
T Consensus 109 L~~aa~ls~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i~~~~~~~qe~ka~~~~~~L~~l~~-~~a~V~Rdg~~~~I~~ 187 (1028)
T 2zxe_A 109 LWIGAILCFLAYGIQAATEDEPANDNLYLGVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVP-QQALVIRDGEKSTINA 187 (1028)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHTTSC-SEEEEEETTEEEEEEG
T ss_pred HHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-CeeEEEECCEEEEEEH
Confidence 567888888776542 11 22468888888888888999999999999999999988877 4899999999999999
Q ss_pred CCcccCcEEEEcCCCeeeceEEEEeeCceEEeccccCCCCcceeecCCC---------CEEEecceEeeceEEEEEEEec
Q 025861 78 YDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDEN---------PFLLAGTKVQDGSVKMLVTTVG 148 (247)
Q Consensus 78 ~~lv~GDii~v~~G~~iP~D~~v~~g~~~~vdes~lTGEs~pv~k~~~~---------~~v~~Gt~~~~g~~~~~V~~~g 148 (247)
+||+|||+|.+++||+|||||++++|+++.||||+|||||.|+.|.+++ |++|+||.+.+|.+.++|++||
T Consensus 188 ~~Lv~GDiV~l~~Gd~IPaD~~ll~g~~~~VdeS~LTGES~pv~K~~~~~~~~~~~~~n~v~~GT~v~~G~~~~~V~~tG 267 (1028)
T 2zxe_A 188 EFVVAGDLVEVKGGDRIPADLRIISAHGCKVDNSSLTGESEPQTRSPEFSSENPLETRNIAFFSTNCVEGTARGVVVYTG 267 (1028)
T ss_dssp GGCCTTCEEEEETTCBCCSEEEEEEEEEEEEECHHHHSCCSCEECCSSCCCSSTTTCSSEECTTCEEEEEEEEEEEEECG
T ss_pred HHCCcCCEEEECCCCEeeceEEEEeeCcEEEEcCccCCCCcceecccCCCCCCcccccceEEeCceEEcceEEEEEEEec
Confidence 9999999999999999999999999987789999999999999999875 4799999999999999999999
Q ss_pred cccccchhhhhhccccccchhHH-------HHHHHHHHHHHHHHHHHhHhhccCCccHHHH-HHHHhHhhhhhhheeeec
Q 025861 149 MRTEWGKLMETLNEGMFDSWLFV-------GILVLTVAFQIIIVEFLGALASTVPLSWHLW-LLCILIGAVSMPIAVVIK 220 (247)
Q Consensus 149 ~~T~~~~i~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~il~ia~P~Al~l~ 220 (247)
.+|.+|||.+++++++.+++++. ..+..+.++.++++++++.+ .. ..|... ...+.+++++|||+|.++
T Consensus 268 ~~T~~g~i~~~~~~~~~~~t~lq~~~~~~~~~l~~~~l~~~~~~~~~~~~-~~--~~~~~~~~~~i~llv~~iP~~Lp~~ 344 (1028)
T 2zxe_A 268 DRTVMGRIATLASGLEVGRTPIAIEIEHFIHIITGVAVFLGVSFFILSLI-LG--YSWLEAVIFLIGIIVANVPEGLLAT 344 (1028)
T ss_dssp GGSHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT--CCHHHHHHHHHHHHHHHSCTTHHHH
T ss_pred cccHHHHHHHhccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cc--CcHHHHHHHHHHHHHHHcCchHHHH
Confidence 99999999999998887776543 33333333333333333222 11 234333 334457888999999998
Q ss_pred ccccCCC
Q 025861 221 CIPVKKS 227 (247)
Q Consensus 221 ~~P~a~~ 227 (247)
+|++..
T Consensus 345 -vti~l~ 350 (1028)
T 2zxe_A 345 -VTVCLT 350 (1028)
T ss_dssp -HHHHHH
T ss_pred -HHHHHH
Confidence 887643
No 6
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=100.00 E-value=2.1e-34 Score=289.52 Aligned_cols=220 Identities=20% Similarity=0.217 Sum_probs=172.3
Q ss_pred hhhHHHHHHHHhhhc---CCC--CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEECCeEEEEeC
Q 025861 3 VSANVIYLSGVGLAT---EGW--PEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVSI 77 (247)
Q Consensus 3 l~~a~~~s~~~~~~~---~~~--~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g~~~~v~~ 77 (247)
+++++++|++.+... +++ ..+|++++.++++++++..+..++++++++.+++++++.+ .+++|+|||++++|++
T Consensus 114 l~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i~~~~~~~qe~ka~~al~~L~~l~~-~~a~ViRdG~~~~I~~ 192 (1034)
T 3ixz_A 114 MWVAAAICLIAFAIQASEGDLTTDDNLYLALALIAVVVVTGCFGYYQEFKSTNIIASFKNLVP-QQATVIRDGDKFQINA 192 (1034)
T ss_pred HHHHHHHHHHHHHHhhccCCCccccchhhhhhhheeeeHHHHHHHHHHHHHHHHHHHHhccCC-CeeEEEECCEEEEEEH
Confidence 456777777665331 222 2358888888888889999999999999999999999887 4899999999999999
Q ss_pred CCcccCcEEEEcCCCeeeceEEEEeeCceEEeccccCCCCcceeecCC---------CCEEEecceEeeceEEEEEEEec
Q 025861 78 YDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDE---------NPFLLAGTKVQDGSVKMLVTTVG 148 (247)
Q Consensus 78 ~~lv~GDii~v~~G~~iP~D~~v~~g~~~~vdes~lTGEs~pv~k~~~---------~~~v~~Gt~~~~g~~~~~V~~~g 148 (247)
+||+|||+|.+++||+|||||++++++++.||||+|||||.|+.|.++ .|++|+||.+.+|+++++|++||
T Consensus 193 ~eLv~GDiV~l~~Gd~VPAD~~ll~~~~l~VdES~LTGES~pv~K~~~~~~~~~~~~~n~~f~GT~v~~G~~~~vVv~tG 272 (1034)
T 3ixz_A 193 DQLVVGDLVEMKGGDRVPADIRILQAQGRKVDNSSLTGESEPQTRSPECTHESPLETRNIAFFSTMCLEGTAQGLVVNTG 272 (1034)
T ss_pred HHCCCCcEEEEcCCceecCCeEEEEeCCceEEecccCCCCCCeeccCCCccccccccccceecceeEEeecceEEEEeeh
Confidence 999999999999999999999999998888999999999999999865 25699999999999999999999
Q ss_pred cccccchhhhhhccccccchhH-------HHHHHHHHHHHHHHHHHHhHhhccCCccHH-HHHHHHhHhhhhhhheeeec
Q 025861 149 MRTEWGKLMETLNEGMFDSWLF-------VGILVLTVAFQIIIVEFLGALASTVPLSWH-LWLLCILIGAVSMPIAVVIK 220 (247)
Q Consensus 149 ~~T~~~~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~il~ia~P~Al~l~ 220 (247)
.+|.+|||.+++++.+.+++++ ...+..++++.++++++++.+ .+ ..|. .+...+.+++++|||+|.++
T Consensus 273 ~~T~~GkI~~~~~~~~~~~tpl~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~i~l~v~~iPe~Lp~~ 349 (1034)
T 3ixz_A 273 DRTIIGRIASLASGVENEKTPIAIEIEHFVDIIAGLAILFGATFFIVAMC-IG--YTFLRAMVFFMAIVVAYVPEGLLAT 349 (1034)
T ss_pred hhhHhhHHHHhhcccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc--chHHHHHHHHHHHHHheeccccHHH
Confidence 9999999999999877776653 333332222222222222222 11 1233 33444567899999999888
Q ss_pred ccccCCC
Q 025861 221 CIPVKKS 227 (247)
Q Consensus 221 ~~P~a~~ 227 (247)
+|++..
T Consensus 350 -vti~la 355 (1034)
T 3ixz_A 350 -VTVCLS 355 (1034)
T ss_pred -HHHHHH
Confidence 776543
No 7
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Probab=100.00 E-value=1.8e-34 Score=289.15 Aligned_cols=222 Identities=22% Similarity=0.269 Sum_probs=170.8
Q ss_pred hhhHHHHHHHHhhhcCC--CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEECCe--EEEEeCC
Q 025861 3 VSANVIYLSGVGLATEG--WPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQ--RQKVSIY 78 (247)
Q Consensus 3 l~~a~~~s~~~~~~~~~--~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g~--~~~v~~~ 78 (247)
+++++++|+++++...+ ....|++++.++++++++..++.++++++++.+++|.++.+ .+++|+|||+ +++|+++
T Consensus 66 l~~~a~~s~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~qe~~a~~al~~L~~~~~-~~a~V~R~g~~~~~~I~~~ 144 (995)
T 3ar4_A 66 LLLAACISFVLAWFEEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEP-EMGKVYRADRKSVQRIKAR 144 (995)
T ss_dssp HHHHHHHHHHHTTSCCSSGGGSSSHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHGGGSC-SEEEEEBTTCSSCEEEEGG
T ss_pred HHHHHHHHHHHHhccccccchhhHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CeEEEEeCCCceEEEEEHH
Confidence 45677778777755422 13478999999988888899999999999999999998877 4899999987 6999999
Q ss_pred CcccCcEEEEcCCCeeeceEEEEee--CceEEeccccCCCCcceeecCCC------------CEEEecceEeeceEEEEE
Q 025861 79 DLVVGDIVHLSIGDQVPADGIFISG--YSLLIDESSLSGESEPMYICDEN------------PFLLAGTKVQDGSVKMLV 144 (247)
Q Consensus 79 ~lv~GDii~v~~G~~iP~D~~v~~g--~~~~vdes~lTGEs~pv~k~~~~------------~~v~~Gt~~~~g~~~~~V 144 (247)
||+|||+|.+++||+|||||+++++ ..+.||||+|||||.|+.|++++ +++|+||.+.+|.++++|
T Consensus 145 ~lv~GDiV~l~~Gd~IPaD~~ll~~~s~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~~~~~~v~~GT~v~~G~~~~~V 224 (995)
T 3ar4_A 145 DIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIV 224 (995)
T ss_dssp GCCTTCEEEEETTCBCCSEEEEEEECSSCEEEECHHHHCCCSCEEECCSCCCCTTCCGGGCTTEECTTCEEEECEEEEEE
T ss_pred HCCCCCEEEECCCCcccccEEEEEEeeceEEEEcccccCCCcceeccccccCCcccCcccccceEecCCEEEcceEEEEE
Confidence 9999999999999999999999754 45789999999999999999873 589999999999999999
Q ss_pred EEeccccccchhhhhhccccccchhHH-------HHHHHHHHHHHHHHHHHhHhhccC---CccHH-----HHHHHHhHh
Q 025861 145 TTVGMRTEWGKLMETLNEGMFDSWLFV-------GILVLTVAFQIIIVEFLGALASTV---PLSWH-----LWLLCILIG 209 (247)
Q Consensus 145 ~~~g~~T~~~~i~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~-----~~~~~~~il 209 (247)
++||.+|.+||+.+++++++.+++++. ..+..+++++++++++++...... ...|. .+...+.++
T Consensus 225 ~~tG~~T~~g~i~~~~~~~~~~~tplq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~l~ 304 (995)
T 3ar4_A 225 ATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALA 304 (995)
T ss_dssp EECGGGSHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGGSCSSSSCHHHHHHHHHHHHHHHH
T ss_pred EEcCcchHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHH
Confidence 999999999999999998887776543 233333333333322222211101 11121 122334568
Q ss_pred hhhhhheeeecccccCC
Q 025861 210 AVSMPIAVVIKCIPVKK 226 (247)
Q Consensus 210 ~ia~P~Al~l~~~P~a~ 226 (247)
+++|||||.++ +|++.
T Consensus 305 v~aiP~~Lp~~-vt~~l 320 (995)
T 3ar4_A 305 VAAIPEGLPAV-ITTCL 320 (995)
T ss_dssp HHHSCTTHHHH-HHHHH
T ss_pred HHhcCcchHHH-HHHHH
Confidence 89999999998 88753
No 8
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Probab=100.00 E-value=2.3e-36 Score=298.53 Aligned_cols=219 Identities=21% Similarity=0.285 Sum_probs=167.7
Q ss_pred hhhHHHHHHHHhhhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEECCeEEEEeCCCccc
Q 025861 3 VSANVIYLSGVGLATEGWPEGMYDGLGIILSILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVSIYDLVV 82 (247)
Q Consensus 3 l~~a~~~s~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g~~~~v~~~~lv~ 82 (247)
+++++++|++++... +...+|++++.++++++++.+++.++++++++.+++|.++.+ .+++|+|||++++|+++||+|
T Consensus 73 l~~aaiis~~l~~~~-~~~~~~~~~~~I~~~v~i~~~l~~~qe~ka~~al~~L~~~~~-~~a~V~RdG~~~~I~~~~Lv~ 150 (885)
T 3b8c_A 73 MEMAAIMAIALANGD-GRPPDWQDFVGIICLLVINSTISFIEENNAGNAAAALMAGLA-PKTKVLRDGKWSEQEAAILVP 150 (885)
T ss_dssp HHHHHHGGGGSSCCT-TSCSCCTTHHHHHHHTTTTTTTTTTTTTTTTTHHHHTTTSCS-CCCCCCCSSCSCCCCTTTTCT
T ss_pred HHHHHHHHHHHHhcc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CeEEEEECCEEEEEEHHHCCC
Confidence 346667776665322 334578999888888888889999999999999999988876 478999999999999999999
Q ss_pred CcEEEEcCCCeeeceEEEEeeCceEEeccccCCCCcceeecCCCCEEEecceEeeceEEEEEEEeccccccchhhhhhcc
Q 025861 83 GDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNE 162 (247)
Q Consensus 83 GDii~v~~G~~iP~D~~v~~g~~~~vdes~lTGEs~pv~k~~~~~~v~~Gt~~~~g~~~~~V~~~g~~T~~~~i~~~~~~ 162 (247)
||+|.+++||+|||||++++|+++.||||+|||||.|+.|++++. +|+||.|.+|.++++|++||.+|.+||+.+++++
T Consensus 151 GDiV~l~~Gd~IPaDg~ll~g~~l~VdES~LTGES~Pv~K~~g~~-v~~GT~v~~G~~~~~V~~tG~~T~~g~i~~lv~~ 229 (885)
T 3b8c_A 151 GDIVSIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKHPGQE-VFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDS 229 (885)
T ss_dssp TSBCCCCSSCCCSSCCCCCCSSCBCCCCCSTTCCSSCCCBSSCCC-CCSCCCCCSCCCCCBCCSCTTTTTSTTCCCSCCS
T ss_pred CCEEEECCCCEEeeceEEEEcCcccccccccCCCCcceEecCCCc-cccCeEEeeeEEEEEEEEcCcccHHHHHHHHHhc
Confidence 999999999999999999999987899999999999999999987 9999999999999999999999999999999887
Q ss_pred ccccchhHH---HHHH----HHHHHHHHHHHHHhHhhccCCccHHH-HHHHHhHhhhhhhheeeecccccCCCC
Q 025861 163 GMFDSWLFV---GILV----LTVAFQIIIVEFLGALASTVPLSWHL-WLLCILIGAVSMPIAVVIKCIPVKKSE 228 (247)
Q Consensus 163 ~~~~~~~~~---~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~il~ia~P~Al~l~~~P~a~~~ 228 (247)
+.+++++. ..+. ..+.+...+..++.+.... ..|.. +..++.+++++|||||.++ +|++...
T Consensus 230 -~~~~~~lq~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~llv~aiP~aLp~~-vti~la~ 299 (885)
T 3b8c_A 230 -TNQVGHFQKVLTAIGNFCICSIAIGMVIEIIVMYPIQR--RKYRDGIDNLLVLLIGGIPIAMPTV-LSVTMAI 299 (885)
T ss_dssp -CSCCSTTTTTTHHHHHHHHHHHHHHHHHHSTTTTTTTC--SCSTTHHHHHHHHTTTTCCSSTTTH-HHHTTTH
T ss_pred -ccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--CcHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHH
Confidence 34444432 2221 1111111111111111111 12333 3444567899999999888 7766543
No 9
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F
Probab=99.97 E-value=2.1e-32 Score=207.48 Aligned_cols=111 Identities=29% Similarity=0.485 Sum_probs=103.9
Q ss_pred HHHHHhchhCCCeEEEEECCeEEEEeCCCcccCcEEEEcCCCeeeceEEEEeeCceEEeccccCCCCcceeecCCCCEEE
Q 025861 51 QFRDLDREKKKIFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPMYICDENPFLL 130 (247)
Q Consensus 51 ~~~~l~~~~~~~~~~v~r~g~~~~v~~~~lv~GDii~v~~G~~iP~D~~v~~g~~~~vdes~lTGEs~pv~k~~~~~~v~ 130 (247)
.+++|.++.+ .+++|+|||+++++++++|+|||++.+++||+|||||++++|++ .+|||+|||||.|+.|++++. +|
T Consensus 2 al~~L~~l~p-~~a~v~r~g~~~~i~~~~l~~GDiv~v~~G~~iPaDg~v~~g~~-~vdeS~LTGEs~pv~k~~g~~-v~ 78 (113)
T 2hc8_A 2 AIKKLVGLQA-KTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGES-YVDESMISGEPVPVLKSKGDE-VF 78 (113)
T ss_dssp HHHHHHHHSC-SEEEEEETTEEEEEEGGGCCTTCEEEECTTCBCCSEEEEEECCE-EEECHHHHCCSSCEEECTTCE-EC
T ss_pred HHHHHhcCCC-CEEEEEECCEEEEEEHHHCCCCCEEEECCCCEEeeeEEEEEceE-EEEccccCCCCccEEECCCCE-EE
Confidence 3566777776 48999999999999999999999999999999999999999996 899999999999999999997 99
Q ss_pred ecceEeeceEEEEEEEeccccccchhhhhhcccc
Q 025861 131 AGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGM 164 (247)
Q Consensus 131 ~Gt~~~~g~~~~~V~~~g~~T~~~~i~~~~~~~~ 164 (247)
+||.|.+|.+.++|+++|.+|.+|||.+++++++
T Consensus 79 aGt~~~~G~~~~~V~~~g~~T~~~~i~~lv~~a~ 112 (113)
T 2hc8_A 79 GATINNTGVLKIRATRVGGETLLAQIVKLVEDAM 112 (113)
T ss_dssp TTCEECSSCEEEEEEECGGGSHHHHHHHHHHHHH
T ss_pred eCCEEeeceEEEEEEEecCcCHHHHHHHHHHHhh
Confidence 9999999999999999999999999999998764
No 10
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens}
Probab=99.97 E-value=8.2e-32 Score=207.48 Aligned_cols=117 Identities=25% Similarity=0.380 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHhchhCCCeEEEEECCe------EEEEeCCCcccCcEEEEcCCCeeeceEEEEeeCceEEeccccCCCCc
Q 025861 45 DYKQSLQFRDLDREKKKIFIQVTRDGQ------RQKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESE 118 (247)
Q Consensus 45 ~~~~~~~~~~l~~~~~~~~~~v~r~g~------~~~v~~~~lv~GDii~v~~G~~iP~D~~v~~g~~~~vdes~lTGEs~ 118 (247)
++++++.+++|.++.+ .+++|+|+|+ +++|++++|+|||+|.+++||+|||||++++|++ .+|||+|||||.
T Consensus 2 ~~ka~~~l~~L~~l~p-~~a~v~r~g~~~~~~~~~~v~~~~l~~GDiv~v~~G~~iPaDg~vi~g~~-~vdeS~LTGEs~ 79 (124)
T 2kij_A 2 SFTMSEALAKLISLQA-TEATIVTLDSDNILLSEEQVDVELVQRGDIIKVVPGGKFPVDGRVIEGHS-MVDESLITGEAM 79 (124)
T ss_dssp ----CCHHHHHHHTCC-SEEEEEECSSSTTCCEEEEEETTTCCTTCEEECCTTCBCSSCEEECSCCC-EEECTTTTCCSS
T ss_pred hHHHHHHHHHHhccCC-CEEEEEECCCCCceeEEEEEeHHHCCCCCEEEECCCCEEEeeEEEEEccE-EEEeccccCCCc
Confidence 4567778888888887 4899999764 6899999999999999999999999999999998 799999999999
Q ss_pred ceeecCCCCEEEecceEeeceEEEEEEEeccccccchhhhhhcccc
Q 025861 119 PMYICDENPFLLAGTKVQDGSVKMLVTTVGMRTEWGKLMETLNEGM 164 (247)
Q Consensus 119 pv~k~~~~~~v~~Gt~~~~g~~~~~V~~~g~~T~~~~i~~~~~~~~ 164 (247)
|+.|.+++. +|+||.|.+|.+.++|+++|.+|.+|||.+++++++
T Consensus 80 pv~k~~g~~-v~aGt~~~~G~~~~~v~~~g~~T~~~~I~~lv~~a~ 124 (124)
T 2kij_A 80 PVAKKPGST-VIAGSINQNGSLLICATHVGADTTLSQIVKLVEEAQ 124 (124)
T ss_dssp CEECCTTEE-ECTTCEEESSCCEEEECSCTTTCHHHHHHHHTTTTC
T ss_pred cEEeCCCCE-EEcCCEEeeeEEEEEEEEecccCHHHHHHHHHHhhC
Confidence 999999986 999999999999999999999999999999998764
No 11
>2jmz_A Hypothetical protein MJ0781; unknown function; NMR {Methanocaldococcus jannaschii} PDB: 2jnq_A
Probab=86.37 E-value=0.91 Score=36.03 Aligned_cols=36 Identities=14% Similarity=0.284 Sum_probs=29.4
Q ss_pred CeEEEEECCeEEEEeCCCcccCcEEEEcCCCeeece
Q 025861 62 IFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPAD 97 (247)
Q Consensus 62 ~~~~v~r~g~~~~v~~~~lv~GDii~v~~G~~iP~D 97 (247)
....+.++|+.+.+++++|.+||.|.+..|..++.|
T Consensus 103 Hp~~v~~~g~~~w~~A~eLk~GD~v~~~~~~~~~~~ 138 (186)
T 2jmz_A 103 HPVYISKTGEVLEINAEMVKVGDYIYIPKNNTINLD 138 (186)
T ss_dssp CEEEEEETTEEEEEEGGGCCTTSEEEEECSSSEEEE
T ss_pred CEEEEeCCCeEEEEEhhcCCCCCEEEecccCCccce
Confidence 356777888888999999999999999876656554
No 12
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}
Probab=80.69 E-value=1.9 Score=34.15 Aligned_cols=36 Identities=19% Similarity=0.164 Sum_probs=29.3
Q ss_pred CCCeEEEEECCeEEEEeCCCcccCcEEEEcCCCeee
Q 025861 60 KKIFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVP 95 (247)
Q Consensus 60 ~~~~~~v~r~g~~~~v~~~~lv~GDii~v~~G~~iP 95 (247)
++....+.++|+.+.+.+++|.+||.|.+..++..|
T Consensus 91 ~~H~~~v~~~g~~~~~~A~eLk~GD~v~v~~~~~~~ 126 (185)
T 2lcj_A 91 VDHPVLVYENGRFIEKRAFEVKEGDKVLVSELELVE 126 (185)
T ss_dssp SSSEEEEEETTEEEEEEGGGCCTTCEEEECCCCCSC
T ss_pred CCCEEEEecCCeEEEEEHHHCCCCCEEEEccccccc
Confidence 345677888899899999999999999998766433
No 13
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=60.95 E-value=10 Score=28.61 Aligned_cols=32 Identities=9% Similarity=-0.115 Sum_probs=25.1
Q ss_pred CCCeEEEEEC--CeEEEEeCCCcccCcEEEEcCC
Q 025861 60 KKIFIQVTRD--GQRQKVSIYDLVVGDIVHLSIG 91 (247)
Q Consensus 60 ~~~~~~v~r~--g~~~~v~~~~lv~GDii~v~~G 91 (247)
++....+..+ ++...+.+++|++||.|.+..|
T Consensus 70 p~H~i~v~~~~~~~~~~v~A~~l~~GD~v~~~~~ 103 (145)
T 1at0_A 70 PAHLVSVWQPESQKLTFVFADRIEEKNQVLVRDV 103 (145)
T ss_dssp TTCEEEEEETTTTEEEEEEGGGCCTTCEEEEECT
T ss_pred CCCEEEEecCCCCcEEEEEHHHCcCCCEEEEecC
Confidence 3445666665 4578899999999999999877
No 14
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=55.24 E-value=24 Score=23.65 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=26.2
Q ss_pred CeEEEEECCeEEEEe---CCCcccCcEEEEcCCCee
Q 025861 62 IFIQVTRDGQRQKVS---IYDLVVGDIVHLSIGDQV 94 (247)
Q Consensus 62 ~~~~v~r~g~~~~v~---~~~lv~GDii~v~~G~~i 94 (247)
..++|-.+|..++++ ..+..+||-|++..|-.+
T Consensus 15 ~~A~vd~~Gv~r~V~l~Lv~~~~vGD~VLVH~GfAi 50 (75)
T 2z1c_A 15 PVAVVDFGGVKREVRLDLMPDTKPGDWVIVHTGFAI 50 (75)
T ss_dssp TEEEEEETTEEEEEECTTSTTCCTTCEEEEETTEEE
T ss_pred CEEEEEcCCEEEEEEEEEeCCCCCCCEEEEecchhh
Confidence 367788889888887 456779999999998654
No 15
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=43.79 E-value=8.3 Score=28.93 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=17.2
Q ss_pred EEEeCCCcccCcEEEEcCCCe
Q 025861 73 QKVSIYDLVVGDIVHLSIGDQ 93 (247)
Q Consensus 73 ~~v~~~~lv~GDii~v~~G~~ 93 (247)
..|+.++++|||+|..+.|..
T Consensus 61 ~~V~~~~l~pGDLvFf~~~~~ 81 (135)
T 2k1g_A 61 KSVSRSNLRTGDLVLFRAGST 81 (135)
T ss_dssp EEECGGGCCTTEEEEEEETTT
T ss_pred cEecHHHccCCcEEEECCCCC
Confidence 467889999999999986643
No 16
>4e2u_A PHO RADA intein; HINT-fold, unknown function; 1.58A {Pyrococcus horikoshii} PDB: 2lqm_A 4e2t_A*
Probab=43.63 E-value=16 Score=28.06 Aligned_cols=28 Identities=29% Similarity=0.253 Sum_probs=21.3
Q ss_pred eEEEEECCeEEEEeCCCcccCcEEEEcCC
Q 025861 63 FIQVTRDGQRQKVSIYDLVVGDIVHLSIG 91 (247)
Q Consensus 63 ~~~v~r~g~~~~v~~~~lv~GDii~v~~G 91 (247)
...+.++++ ..+.+++|.+||.+.+..|
T Consensus 98 p~~~~~~~~-~w~~a~~L~~Gd~l~~~~g 125 (168)
T 4e2u_A 98 PVLLFRDGL-QWVPAAEVKPGDVVVGVRN 125 (168)
T ss_dssp EEEEESSSE-EEEEGGGCCTTCEEEEEET
T ss_pred cEEEEcCCC-EEEEHHHCCCCCEEEeccC
Confidence 344444553 6788999999999999877
No 17
>2cw8_A Endonuclease PI-pkoii; hydrolase; 2.50A {Thermococcus kodakarensis} PDB: 2cw7_A
Probab=43.09 E-value=27 Score=32.15 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=24.6
Q ss_pred CCeEEEEECCeEEEEeCCCcccCcEEEEc
Q 025861 61 KIFIQVTRDGQRQKVSIYDLVVGDIVHLS 89 (247)
Q Consensus 61 ~~~~~v~r~g~~~~v~~~~lv~GDii~v~ 89 (247)
+....+.+||+...+++++|.+||.|.+.
T Consensus 95 ~H~~l~~~~g~~~~~~a~elk~GD~v~~~ 123 (537)
T 2cw8_A 95 GHSLFSVRNGELVEVTGDELKPGDLVAVP 123 (537)
T ss_dssp TCEEEEEETTEEEEEETTTCCTTCEEEEE
T ss_pred CceEEEEECCEEEEEEhhcCCCCCEEEEe
Confidence 44566778899999999999999999984
No 18
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=33.83 E-value=21 Score=26.47 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=17.2
Q ss_pred EEEeCCCcccCcEEEEcCCCe
Q 025861 73 QKVSIYDLVVGDIVHLSIGDQ 93 (247)
Q Consensus 73 ~~v~~~~lv~GDii~v~~G~~ 93 (247)
..++.++++|||++..+.+..
T Consensus 61 ~~v~~~~l~pGDLvff~~~~~ 81 (136)
T 2jyx_A 61 KSVSRSNLRTGDLVLFRAGST 81 (136)
T ss_dssp EECCTTTCCTTEEEEEECSSS
T ss_pred eEcchHhCCCCCEEEECCCCC
Confidence 456788999999999987653
No 19
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=31.83 E-value=33 Score=34.29 Aligned_cols=60 Identities=22% Similarity=0.249 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhCCCeEEEEECCeEEEEeCCCcccCcEEEEcCCCeeeceEEEEee
Q 025861 34 ILLVVMVTAISDYKQSLQFRDLDREKKKIFIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQVPADGIFISG 103 (247)
Q Consensus 34 v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~g~~~~v~~~~lv~GDii~v~~G~~iP~D~~v~~g 103 (247)
++++..+.....+.++++.++..+...+... .+ . .=++-|....+...|.+|-|.++++.
T Consensus 146 i~~vv~i~~~~~~~qe~ka~~al~~L~~l~~-----~~-a----~ViRdG~~~~I~~~eLv~GDiV~l~~ 205 (1034)
T 3ixz_A 146 LIAVVVVTGCFGYYQEFKSTNIIASFKNLVP-----QQ-A----TVIRDGDKFQINADQLVVGDLVEMKG 205 (1034)
T ss_pred hheeeeHHHHHHHHHHHHHHHHHHHHhccCC-----Ce-e----EEEECCEEEEEEHHHCCCCcEEEEcC
Confidence 3344556666666666655443333322111 11 1 12345888888888999999988873
No 20
>2ot2_A Hydrogenase isoenzymes formation protein HYPC; beta barrel, chaperone; NMR {Escherichia coli K12} SCOP: b.40.14.1
Probab=31.46 E-value=54 Score=22.70 Aligned_cols=32 Identities=22% Similarity=0.208 Sum_probs=24.7
Q ss_pred eEEEEECCeEEEEeCCC---------cccCcEEEEcCCCee
Q 025861 63 FIQVTRDGQRQKVSIYD---------LVVGDIVHLSIGDQV 94 (247)
Q Consensus 63 ~~~v~r~g~~~~v~~~~---------lv~GDii~v~~G~~i 94 (247)
.++|-..|..++|+..- ..+||-|++..|-.+
T Consensus 16 ~A~Vd~~Gv~r~V~l~Lv~~~~~~~~~~vGD~VLVH~GfAi 56 (90)
T 2ot2_A 16 QAKVDVCGIQRDVDLTLVGSCDENGQPRVGQWVLVHVGFAM 56 (90)
T ss_dssp EEEEECSSSEEEEECTTTCSBCTTSCBCTTCEEEEETTEEE
T ss_pred cEEEEcCCeEEEEEEeeeeccCCCCCCCCCCEEEEecChhh
Confidence 47777788888887554 478999999999654
No 21
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}
Probab=28.69 E-value=58 Score=21.32 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=15.7
Q ss_pred EEEEECCeEEEEe--CCCcccCcEEEEc
Q 025861 64 IQVTRDGQRQKVS--IYDLVVGDIVHLS 89 (247)
Q Consensus 64 ~~v~r~g~~~~v~--~~~lv~GDii~v~ 89 (247)
+.+.|+|+.. ++ ...|.+||++.+-
T Consensus 44 ~~I~R~~~~~-~p~~~~~l~~GD~l~v~ 70 (86)
T 3jxo_A 44 AAIVRGGVLV-VPRGDTEILSGDKLYVI 70 (86)
T ss_dssp EEEEETTEEE-CCCTTCBCCTTCEEEEE
T ss_pred EEEEECCEEE-CCCCCCEECCCCEEEEE
Confidence 4567888754 34 3447778877663
No 22
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Probab=27.72 E-value=53 Score=29.05 Aligned_cols=29 Identities=14% Similarity=0.432 Sum_probs=23.5
Q ss_pred CCCcccCcEEEEcCCCeee--ceEEEEeeCc
Q 025861 77 IYDLVVGDIVHLSIGDQVP--ADGIFISGYS 105 (247)
Q Consensus 77 ~~~lv~GDii~v~~G~~iP--~D~~v~~g~~ 105 (247)
..++.+|+-+.+-.|..+| +|.++..-+.
T Consensus 92 ~~~l~~g~a~~I~TGa~~P~GadaVV~~E~~ 122 (396)
T 1wu2_A 92 KEEVTTGKAIKVLTGTRIPKGANAVIMQEMV 122 (396)
T ss_dssp SSCCCTTEEEEECTTCBCCTTCCEEEEGGGS
T ss_pred CCccCCCcEEEEccCCCCCCCCCEEEEEEEE
Confidence 4568899999999999998 8888765443
No 23
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=27.31 E-value=50 Score=29.24 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=22.9
Q ss_pred CCCcccCcEEEEcCCCeee--ceEEEEeeC
Q 025861 77 IYDLVVGDIVHLSIGDQVP--ADGIFISGY 104 (247)
Q Consensus 77 ~~~lv~GDii~v~~G~~iP--~D~~v~~g~ 104 (247)
..++.+|+-+.+-.|..+| +|.++..-+
T Consensus 90 ~~~l~~g~a~~i~TGa~~P~GadaVV~~E~ 119 (402)
T 1uz5_A 90 KFKLGKGEAAYISTGAMLPGNADAVIQFED 119 (402)
T ss_dssp CCBCCTTEEEEECTTCBCCBTCCEEEEGGG
T ss_pred CCccCCCcEEEEccCCCCCCCCCEEEEEEE
Confidence 4568899999999999998 888776433
No 24
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A*
Probab=27.25 E-value=32 Score=29.97 Aligned_cols=30 Identities=30% Similarity=0.510 Sum_probs=23.0
Q ss_pred CeEEEEECCeEEEEeCC------------CcccCcEEEEcCC
Q 025861 62 IFIQVTRDGQRQKVSIY------------DLVVGDIVHLSIG 91 (247)
Q Consensus 62 ~~~~v~r~g~~~~v~~~------------~lv~GDii~v~~G 91 (247)
..+++.|+|+...++.. .|++||+|.+.+-
T Consensus 191 ~~V~l~R~g~~~~idl~~ll~~g~~~~~~~L~~GD~I~Vp~~ 232 (359)
T 2j58_A 191 RNVVLTHNGKDTKISLYALMQKGDLTQNHLLYHGDILFIPSN 232 (359)
T ss_dssp TCEEEEETTEEEEECHHHHHTTCBGGGCCBCCTTCEEEECBG
T ss_pred ceEEEEECCeEEEEEHHHHhhcCCcccceeccCCCeEEEeec
Confidence 46899999998877643 3788888888753
No 25
>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A {Escherichia coli O127}
Probab=26.24 E-value=54 Score=26.81 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=22.3
Q ss_pred CeEEEEE-CCeEEEEeC-------CCcccCcEEEEcCCC
Q 025861 62 IFIQVTR-DGQRQKVSI-------YDLVVGDIVHLSIGD 92 (247)
Q Consensus 62 ~~~~v~r-~g~~~~v~~-------~~lv~GDii~v~~G~ 92 (247)
..++|++ ||+....+. .++.|||.|.|....
T Consensus 166 ~~v~VI~~nG~v~~~~~a~Wn~~~~~l~PG~~I~Vp~~~ 204 (236)
T 3p42_A 166 NNVMVITPEGETVVAPVALWNKRHVEPPPGSQLWLGFSA 204 (236)
T ss_dssp SEEEEECTTSCEEEEECSSTTCCCEECCTTCEEEECBCT
T ss_pred ccEEEEeCCCCEEeccccccccCCCCCCCCCEEEEeCCc
Confidence 3566665 788877763 379999999886543
No 26
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.82 E-value=34 Score=21.52 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=22.1
Q ss_pred CCCcccCcEEEEcCCCeeeceEEEEee
Q 025861 77 IYDLVVGDIVHLSIGDQVPADGIFISG 103 (247)
Q Consensus 77 ~~~lv~GDii~v~~G~~iP~D~~v~~g 103 (247)
..++.+||.|.+..|..--..|++.+-
T Consensus 5 ~~~f~~GD~V~V~~Gpf~g~~G~V~ev 31 (59)
T 2e6z_A 5 SSGFQPGDNVEVCEGELINLQGKILSV 31 (59)
T ss_dssp CSSCCTTSEEEECSSTTTTCEEEECCC
T ss_pred cccCCCCCEEEEeecCCCCCEEEEEEE
Confidence 346899999999999888788888653
No 27
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=25.06 E-value=23 Score=33.46 Aligned_cols=27 Identities=26% Similarity=0.534 Sum_probs=21.1
Q ss_pred EeCCCcccCcEEEEc-CCCeee-ceEEEE
Q 025861 75 VSIYDLVVGDIVHLS-IGDQVP-ADGIFI 101 (247)
Q Consensus 75 v~~~~lv~GDii~v~-~G~~iP-~D~~v~ 101 (247)
|.-.+|.+||.|.|+ +||.|| ..+++.
T Consensus 374 i~~~di~iGD~V~V~rAGdVIP~V~~vv~ 402 (615)
T 3sgi_A 374 IKRKGVLIGDTVVIRKAGDVIPEVLGPVV 402 (615)
T ss_dssp TTTTCCCBTCEEEEECCSSSSCCCCEECT
T ss_pred HHHcCCCCCCEEEEEEcCCCccceeeecc
Confidence 456789999999995 699999 455554
No 28
>3gt2_A Putative uncharacterized protein; P60 domain, antigen, unknown function; HET: EDO; 1.75A {Mycobacterium avium subsp}
Probab=24.14 E-value=30 Score=25.84 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=15.5
Q ss_pred EEEeCCCcccCcEEEEcCC
Q 025861 73 QKVSIYDLVVGDIVHLSIG 91 (247)
Q Consensus 73 ~~v~~~~lv~GDii~v~~G 91 (247)
..|+.++++|||++..+.+
T Consensus 83 ~~v~~~~~~pGDlvff~~~ 101 (142)
T 3gt2_A 83 QKILPQQARKGDLIFYGPE 101 (142)
T ss_dssp EEECGGGCCTTCEEEESGG
T ss_pred ceechhhCCCCCEEEeCCC
Confidence 4567889999999998753
No 29
>1am2_A MXE GYRA intein; protein splicing; 2.20A {Mycobacterium xenopi} SCOP: b.86.1.2
Probab=23.89 E-value=83 Score=24.70 Aligned_cols=30 Identities=13% Similarity=0.003 Sum_probs=20.8
Q ss_pred CeEEEEE--CC--eEEEEeCCCcccCcEEEEcCC
Q 025861 62 IFIQVTR--DG--QRQKVSIYDLVVGDIVHLSIG 91 (247)
Q Consensus 62 ~~~~v~r--~g--~~~~v~~~~lv~GDii~v~~G 91 (247)
....+.+ +| +...+.+++|++||.|.+..+
T Consensus 76 H~~lt~~~~~g~~~~~w~~a~eLk~GD~v~~~~~ 109 (199)
T 1am2_A 76 HPLLCLVDVAGVPTLLWKLIDEIKPGDYAVIQRS 109 (199)
T ss_dssp CEEEEEEEETTEEEEEEEEGGGCCTTCEEEEEGG
T ss_pred CEEEEeccCCCccceeEEEhhHCCCCCEEEECCc
Confidence 3444544 45 235689999999999988654
No 30
>3ne0_A Resuscitation promoting factor interacting protei; cell WALL, peptidoglycan, hydrolase; 1.00A {Mycobacterium tuberculosis} PDB: 3pbc_A 3s0q_A 2xiv_A*
Probab=23.58 E-value=1.3e+02 Score=24.20 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=15.9
Q ss_pred EEEeCCCcccCcEEEEcCC
Q 025861 73 QKVSIYDLVVGDIVHLSIG 91 (247)
Q Consensus 73 ~~v~~~~lv~GDii~v~~G 91 (247)
+.|+.++++|||+|..++|
T Consensus 152 ~~V~~~~lqpGDLvFf~~g 170 (214)
T 3ne0_A 152 RKIPSSQMRRGDVIFYGPN 170 (214)
T ss_dssp EEEEGGGCCTTCEEEESGG
T ss_pred ceechhhCCCCCEEEecCC
Confidence 4577899999999999755
No 31
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=22.80 E-value=61 Score=24.70 Aligned_cols=53 Identities=21% Similarity=0.399 Sum_probs=38.6
Q ss_pred CcEEEEcCCC---eeeceEEEEee------------CceE------EeccccCCCCcceeecCCCCEEEecceEe
Q 025861 83 GDIVHLSIGD---QVPADGIFISG------------YSLL------IDESSLSGESEPMYICDENPFLLAGTKVQ 136 (247)
Q Consensus 83 GDii~v~~G~---~iP~D~~v~~g------------~~~~------vdes~lTGEs~pv~k~~~~~~v~~Gt~~~ 136 (247)
||-+-+.|-+ +-|+||.+..- +..+ +|+..+.||..-...+.||. +-+|..+.
T Consensus 35 G~Giai~p~~~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~G~gF~~~V~~Gd~-V~~G~~L~ 108 (154)
T 2gpr_A 35 GDGFAINPKSNDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGNGFESFVTQDQE-VNAGDKLV 108 (154)
T ss_dssp CEEEEEEESSSEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGTTCSEEECCCTTCE-ECTTCEEE
T ss_pred eCeEEEEeCCCcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcCCCceEEEEcCCCE-EcCCCEEE
Confidence 6666655432 36899999751 1112 38999999999888899998 99999765
No 32
>3pbi_A Invasion protein; peptidoglycan hydrolase, extracellular, invasion related Pro cell WALL, NLPC-like module, hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 3i86_A
Probab=22.36 E-value=33 Score=27.76 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=16.0
Q ss_pred EEEeCCCcccCcEEEEcCC
Q 025861 73 QKVSIYDLVVGDIVHLSIG 91 (247)
Q Consensus 73 ~~v~~~~lv~GDii~v~~G 91 (247)
+.|+.++++|||+|..++|
T Consensus 152 ~~V~~~~lqpGDLVff~~g 170 (214)
T 3pbi_A 152 RHVPPAEAKRGDLIFYGPG 170 (214)
T ss_dssp EEECGGGCCTTCEEEESGG
T ss_pred eeechhhCCCCCEEEecCC
Confidence 4678889999999999754
No 33
>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*
Probab=21.63 E-value=1.3e+02 Score=24.78 Aligned_cols=27 Identities=41% Similarity=0.537 Sum_probs=18.7
Q ss_pred eEEEEECCeEEEEeCCCcccCcEEEEcCCCee
Q 025861 63 FIQVTRDGQRQKVSIYDLVVGDIVHLSIGDQV 94 (247)
Q Consensus 63 ~~~v~r~g~~~~v~~~~lv~GDii~v~~G~~i 94 (247)
.+.|..||..+.++ +|..|.++||+.+
T Consensus 156 ~v~V~~DG~~~~~~-----aG~~i~L~PGESi 182 (246)
T 3kmh_A 156 DITVVIDGCRQKHT-----AGSQLRLSPGESI 182 (246)
T ss_dssp CEEEEETTEEEEEC-----TTCEEEECTTCEE
T ss_pred CeEEecCCeEEEeC-----CCCEEEECCCCeE
Confidence 56777788776554 4777777777765
No 34
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=21.44 E-value=1.1e+02 Score=21.49 Aligned_cols=14 Identities=21% Similarity=0.510 Sum_probs=9.6
Q ss_pred CCCcccCcEEEEcC
Q 025861 77 IYDLVVGDIVHLSI 90 (247)
Q Consensus 77 ~~~lv~GDii~v~~ 90 (247)
..|+++||+|..-.
T Consensus 79 ~~dik~GD~Ie~ye 92 (99)
T 1d1n_A 79 FNDIKEGDVIEAYV 92 (99)
T ss_dssp CSSCSSCSEEEEEC
T ss_pred cCCCCCCCEEEEEE
Confidence 45778888776644
No 35
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=20.33 E-value=30 Score=32.47 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=19.9
Q ss_pred CCCcccCcEEEEc-CCCeee-ceEEEE
Q 025861 77 IYDLVVGDIVHLS-IGDQVP-ADGIFI 101 (247)
Q Consensus 77 ~~~lv~GDii~v~-~G~~iP-~D~~v~ 101 (247)
-.+|.+||.|.|+ +||.|| .++++.
T Consensus 366 ~~di~iGD~V~V~rAGdVIP~I~~Vv~ 392 (586)
T 4glx_A 366 RLGLRIGDKVVIRRAGDVIPQVVNVVL 392 (586)
T ss_dssp HHTCEETCEEEEEEETTTEEEEEEECG
T ss_pred hcCCCcCCEEEEEECCCcCccceeeec
Confidence 3689999999995 799999 555553
No 36
>2if6_A Hypothetical protein YIIX; structural genomics, metalloprotein, PSI-2, PR structure initiative, NEW YORK SGX research center for STRU genomics; 1.80A {Escherichia coli} SCOP: d.3.1.21
Probab=20.31 E-value=50 Score=25.58 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=12.8
Q ss_pred CCCcccCcEEEEcCCC
Q 025861 77 IYDLVVGDIVHLSIGD 92 (247)
Q Consensus 77 ~~~lv~GDii~v~~G~ 92 (247)
.++|++||+|..+.+.
T Consensus 2 ~~~l~~GDlvf~~~~~ 17 (186)
T 2if6_A 2 LWQPQTGDIIFQISRS 17 (186)
T ss_dssp -CCCCTTCEEEECCCS
T ss_pred cccCCCCCEEEEEcCC
Confidence 4689999999998754
No 37
>2in0_A Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 2l8l_A 2in9_A 2in8_A 3ifj_A 3igd_A
Probab=20.04 E-value=50 Score=24.11 Aligned_cols=19 Identities=21% Similarity=0.046 Sum_probs=16.0
Q ss_pred EEeCCCcccCcEEEEcCCC
Q 025861 74 KVSIYDLVVGDIVHLSIGD 92 (247)
Q Consensus 74 ~v~~~~lv~GDii~v~~G~ 92 (247)
.+++++|++||.+.+..|.
T Consensus 81 w~~a~~L~~Gd~v~~~~~~ 99 (139)
T 2in0_A 81 WRAAGELRKGDRVAVRDVE 99 (139)
T ss_dssp EEEGGGCCTTCEEEEECTT
T ss_pred cEEHHHCCCCCEEEeCCCc
Confidence 3578999999999998775
Done!