BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025862
         (247 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ABO|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase From
          Escherichia Coli Complexed With Cn-Cbl And Ethanolamine
 pdb|3ABO|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase From
          Escherichia Coli Complexed With Cn-Cbl And Ethanolamine
 pdb|3ABQ|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase From
          Escherichia Coli Complexed With Cn-Cbl And
          2-Amino-1-Propanol
 pdb|3ABQ|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase From
          Escherichia Coli Complexed With Cn-Cbl And
          2-Amino-1-Propanol
 pdb|3ABR|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase From
          Escherichia Coli Complexed With Cn-Cbl (Substrate-Free
          Form)
 pdb|3ABR|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase From
          Escherichia Coli Complexed With Cn-Cbl (Substrate-Free
          Form)
 pdb|3ABS|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase From
          Escheri Complexed With Adeninylpentylcobalamin And
          Ethanolamine
 pdb|3ABS|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase From
          Escheri Complexed With Adeninylpentylcobalamin And
          Ethanolamine
 pdb|3ANY|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase From
          Escherichia Coli Complexed With Cn-Cbl And
          (R)-2-Amino-1-Propanol
 pdb|3ANY|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase From
          Escherichia Coli Complexed With Cn-Cbl And
          (R)-2-Amino-1-Propanol
 pdb|3AO0|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase From
          Escherichia Coli Complexed With Cn-Cbl And
          (S)-2-Amino-1-Propanol
 pdb|3AO0|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase From
          Escherichia Coli Complexed With Cn-Cbl And
          (S)-2-Amino-1-Propanol
          Length = 453

 Score = 28.9 bits (63), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 9/67 (13%)

Query: 16 RDVQELLEKCHPLGMFDSIATLAVA---------QNMRELYRLVLVDTPLAPYFSECITS 66
          +DV+E+L K + L   D +A +A A         Q + E+    + + P+  Y  +C+T 
Sbjct: 15 KDVKEVLAKANELRSGDVLAGVAAASSQERVAAKQVLSEMTVADIRNNPVIAYEDDCVTR 74

Query: 67 EDLDDMN 73
             DD+N
Sbjct: 75 LIQDDVN 81


>pdb|3I76|A Chain A, The Crystal Structure Of The Orthorhombic Form Of The
           Putative Had- Hydrolase Yfnb From Bacillus Subtilis
           Bound To Magnesium Reveals Interdomain Movement
 pdb|3I76|B Chain B, The Crystal Structure Of The Orthorhombic Form Of The
           Putative Had- Hydrolase Yfnb From Bacillus Subtilis
           Bound To Magnesium Reveals Interdomain Movement
 pdb|3I76|C Chain C, The Crystal Structure Of The Orthorhombic Form Of The
           Putative Had- Hydrolase Yfnb From Bacillus Subtilis
           Bound To Magnesium Reveals Interdomain Movement
          Length = 244

 Score = 28.1 bits (61), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 9/67 (13%)

Query: 11  GTLHERDVQELLEKCHPL--GMFDSIATLA-------VAQNMRELYRLVLVDTPLAPYFS 61
           G L E+  +  LE+ H L  G FD I+ L        V   +       L D+ L P+F 
Sbjct: 86  GALLEQKYRRFLEEGHQLIDGAFDLISNLQQQFDLYIVTNGVSHTQYKRLRDSGLFPFFK 145

Query: 62  ECITSED 68
           +   SED
Sbjct: 146 DIFVSED 152


>pdb|3ED5|A Chain A, The Crystal Structure Of Yfnb From Bacillus Subtilis
           Subsp. Subtilis Str. 168
          Length = 238

 Score = 27.7 bits (60), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 9/67 (13%)

Query: 11  GTLHERDVQELLEKCHPL--GMFDSIATLA-------VAQNMRELYRLVLVDTPLAPYFS 61
           G L E+  +  LE+ H L  G FD I+ L        V   +       L D+ L P+F 
Sbjct: 87  GALLEQKYRRFLEEGHQLIDGAFDLISNLQQQFDLYIVTNGVSHTQYKRLRDSGLFPFFK 146

Query: 62  ECITSED 68
           +   SED
Sbjct: 147 DIFVSED 153


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.139    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,919,608
Number of Sequences: 62578
Number of extensions: 266908
Number of successful extensions: 853
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 844
Number of HSP's gapped (non-prelim): 17
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)