BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025862
(247 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LJI5|VA0D1_ARATH V-type proton ATPase subunit d1 OS=Arabidopsis thaliana GN=VHA-D1
PE=2 SV=1
Length = 351
Score = 500 bits (1287), Expect = e-141, Method: Compositional matrix adjust.
Identities = 235/247 (95%), Positives = 246/247 (99%)
Query: 1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
MIDNVVLIVTGTLHERDVQEL+EKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF
Sbjct: 105 MIDNVVLIVTGTLHERDVQELIEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 164
Query: 61 SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
SEC+TSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT
Sbjct: 165 SECLTSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 224
Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYG 180
INSIGTELTR+DR+KLYSNFGLLYPYGHEELA+CEDIDQVRGVMEKYPPYQ+IFSK+SYG
Sbjct: 225 INSIGTELTREDRKKLYSNFGLLYPYGHEELAICEDIDQVRGVMEKYPPYQAIFSKMSYG 284
Query: 181 ESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVH 240
ESQMLDKAFYEEEV+RLCLAFEQQFHY VFFAYMRLREQEIRNLMWISECVAQNQKSR+H
Sbjct: 285 ESQMLDKAFYEEEVRRLCLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRIH 344
Query: 241 DSVVFIF 247
DSVV++F
Sbjct: 345 DSVVYMF 351
>sp|Q9LHA4|VA0D2_ARATH V-type proton ATPase subunit d2 OS=Arabidopsis thaliana GN=VHA-D2
PE=2 SV=1
Length = 351
Score = 498 bits (1281), Expect = e-140, Method: Compositional matrix adjust.
Identities = 234/247 (94%), Positives = 245/247 (99%)
Query: 1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
MIDNVVLIVTGTLHERDVQEL+EKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF
Sbjct: 105 MIDNVVLIVTGTLHERDVQELIEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 164
Query: 61 SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
SEC+TSEDLDDMNIEIMRNTLYKAYLEDFY FCQKLGGATAEIMSDLLAFEADRRAVNIT
Sbjct: 165 SECLTSEDLDDMNIEIMRNTLYKAYLEDFYNFCQKLGGATAEIMSDLLAFEADRRAVNIT 224
Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYG 180
INSIGTELTR+DR+KLYSNFGLLYPYGHEELA+CEDIDQVRGVMEKYPPYQ+IFSK+SYG
Sbjct: 225 INSIGTELTREDRKKLYSNFGLLYPYGHEELAICEDIDQVRGVMEKYPPYQAIFSKMSYG 284
Query: 181 ESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVH 240
ESQMLDKAFYEEEV+RLCLAFEQQFHY VFFAYMRLREQEIRNLMWISECVAQNQKSR+H
Sbjct: 285 ESQMLDKAFYEEEVRRLCLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRIH 344
Query: 241 DSVVFIF 247
DSVV++F
Sbjct: 345 DSVVYMF 351
>sp|Q8RU33|VA0D_ORYSJ Probable V-type proton ATPase subunit d OS=Oryza sativa subsp.
japonica GN=Os01g0587000 PE=2 SV=1
Length = 351
Score = 494 bits (1271), Expect = e-139, Method: Compositional matrix adjust.
Identities = 233/247 (94%), Positives = 244/247 (98%)
Query: 1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
MIDNVVLIVTGTLHERDV ELLEKCHPLGMFDSIA+LAVAQNMRELYRLVLVDTPLAPYF
Sbjct: 105 MIDNVVLIVTGTLHERDVNELLEKCHPLGMFDSIASLAVAQNMRELYRLVLVDTPLAPYF 164
Query: 61 SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFC+KLGGATAEIM DLL+FEADRRAVNIT
Sbjct: 165 SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCEKLGGATAEIMCDLLSFEADRRAVNIT 224
Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYG 180
INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCED+DQVRGVMEKYPPYQ+IF+K+SYG
Sbjct: 225 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDVDQVRGVMEKYPPYQAIFAKISYG 284
Query: 181 ESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVH 240
ESQMLDKAFYEEEV+RLCL+FEQQFHY VFFAY+RLREQEIRNLMWISECVAQNQK+RVH
Sbjct: 285 ESQMLDKAFYEEEVRRLCLSFEQQFHYAVFFAYIRLREQEIRNLMWISECVAQNQKNRVH 344
Query: 241 DSVVFIF 247
DSVVFIF
Sbjct: 345 DSVVFIF 351
>sp|P54641|VA0D_DICDI V-type proton ATPase subunit d OS=Dictyostelium discoideum
GN=vatD-1 PE=1 SV=2
Length = 356
Score = 315 bits (806), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 145/241 (60%), Positives = 191/241 (79%), Gaps = 2/241 (0%)
Query: 1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
MIDNVVL++TGTLHERD+ EL++KCHPLG+F S+ATL+V N+ +LY VL+DTPLAPY
Sbjct: 111 MIDNVVLLITGTLHERDISELVDKCHPLGLFKSMATLSVVHNVADLYNNVLIDTPLAPYI 170
Query: 61 SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
C++ EDLD+MNIEI+RNTLYKAYLEDFY +C+ LGG T IMSD+L FEADRR++NIT
Sbjct: 171 QGCLSEEDLDEMNIEIIRNTLYKAYLEDFYNYCKYLGGQTELIMSDILKFEADRRSINIT 230
Query: 121 INSIG-TELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSY 179
INS G TEL++DDR KLY + GLLYP G +L ED+DQVRG++E Y Y++ FS
Sbjct: 231 INSFGATELSKDDREKLYPSLGLLYPEGTSKLGKAEDVDQVRGILEVYSTYRNFFSD-GV 289
Query: 180 GESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRV 239
+ L+ +F+E EV +AFE Q+ YGVF+AY++LREQEIRN++WI+EC++QN K ++
Sbjct: 290 NNEKSLEDSFFEHEVHLNRMAFEDQYGYGVFYAYIKLREQEIRNIVWIAECISQNMKQKM 349
Query: 240 H 240
+
Sbjct: 350 N 350
>sp|Q9W4P5|VA0D1_DROME V-type proton ATPase subunit d 1 OS=Drosophila melanogaster
GN=VhaAC39-1 PE=2 SV=1
Length = 350
Score = 293 bits (750), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 140/249 (56%), Positives = 189/249 (75%), Gaps = 4/249 (1%)
Query: 1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
MIDN++L++TGTLH+R + EL+ KCHPLG F+ + + VA ELY VLVDTPLAP+F
Sbjct: 104 MIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVASTPAELYNAVLVDTPLAPFF 163
Query: 61 SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
+CI+ +DLD+MNIEI+RNTLYKAYLE FY FC+ +GGATA++M ++LAFEADRRA+ IT
Sbjct: 164 VDCISEQDLDEMNIEIIRNTLYKAYLEAFYNFCKNMGGATADVMCEILAFEADRRAIIIT 223
Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIF--SKLS 178
INS GTEL++DDR KLY N G +YP G LA +D +QV+ V E Y Y ++F S +
Sbjct: 224 INSFGTELSKDDRAKLYPNCGKMYPDGLAALARADDYEQVKTVAEYYAEYAALFDGSGNN 283
Query: 179 YGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSR 238
G+ + DK F+E EVK AF QQFH+GVF+AY++L+EQE RN++WI+ECVAQ +++
Sbjct: 284 PGDKTLEDK-FFEHEVKLDVYAFLQQFHFGVFYAYLKLKEQECRNIVWIAECVAQKHRAK 342
Query: 239 VHDSVVFIF 247
+ D+ + IF
Sbjct: 343 I-DNYIPIF 350
>sp|Q25531|VA0D_MANSE V-type proton ATPase subunit d OS=Manduca sexta PE=2 SV=1
Length = 348
Score = 285 bits (728), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 136/249 (54%), Positives = 185/249 (74%), Gaps = 4/249 (1%)
Query: 1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
MIDN++L++TGTLH+R + EL+ KCHPLG F+ + + VA ELY VLVDTPLAP+F
Sbjct: 102 MIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPFF 161
Query: 61 SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
+CI+ +DLD+MNIEI+RNTLYKAYLE FY FC+++GG TA++M ++LAFEADRRA+ IT
Sbjct: 162 VDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKQIGGTTADVMCEILAFEADRRAIIIT 221
Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKL--S 178
INS GTEL++DDR KLY G L P G LA +D +QV+ V E Y Y ++F +
Sbjct: 222 INSFGTELSKDDRAKLYPRCGKLNPDGLAALARADDYEQVKAVAEYYAEYSALFEGAGNN 281
Query: 179 YGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSR 238
G+ + DK F+E EV AF QQFH+GVF++Y++L+EQE RN++WISECVAQ +++
Sbjct: 282 VGDKTLEDK-FFEHEVNLNVHAFLQQFHFGVFYSYLKLKEQECRNIVWISECVAQKHRAK 340
Query: 239 VHDSVVFIF 247
+ D+ + IF
Sbjct: 341 I-DNYIPIF 348
>sp|Q5ZHL0|VA0D2_CHICK V-type proton ATPase subunit d 2 OS=Gallus gallus GN=ATP6V0D2 PE=2
SV=1
Length = 351
Score = 283 bits (723), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 126/244 (51%), Positives = 181/244 (74%), Gaps = 1/244 (0%)
Query: 1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
MIDN++L++TGTLH+R + EL+ KCHPLG F+ + +++A N EL+ +LVDTPLA +F
Sbjct: 105 MIDNIILLITGTLHQRPIAELVPKCHPLGSFEQMEAVSIASNPTELFNAILVDTPLAAFF 164
Query: 61 SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
+C++ DLD+MN+EIMRN LYK+YLE FYKFC+K GG TAEIM +L FEADRRA IT
Sbjct: 165 QDCLSENDLDEMNVEIMRNKLYKSYLEAFYKFCEKQGGTTAEIMKPILEFEADRRAFIIT 224
Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYG 180
INS GTEL+++DR KLY G LYP G LA +D +QV+ V + Y Y+++F +
Sbjct: 225 INSFGTELSKEDREKLYPTCGKLYPEGLHLLANADDYEQVKCVADYYAEYKAVFEGVGND 284
Query: 181 ESQ-MLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRV 239
+ L+ AF+E E+K LAF QFH+GVF+AY++L+EQE RN++WI+EC++Q ++++
Sbjct: 285 SGEKTLEDAFFEHEIKLNVLAFNNQFHFGVFYAYIKLKEQECRNIVWIAECISQRHRTKI 344
Query: 240 HDSV 243
++ +
Sbjct: 345 NNYI 348
>sp|P51863|VA0D1_MOUSE V-type proton ATPase subunit d 1 OS=Mus musculus GN=Atp6v0d1 PE=1
SV=2
Length = 351
Score = 280 bits (716), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 133/248 (53%), Positives = 183/248 (73%), Gaps = 2/248 (0%)
Query: 1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
MIDNV+L++TGTLH+R + EL+ KCHPLG F+ + + +AQ ELY +LVDTPLA +F
Sbjct: 105 MIDNVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFF 164
Query: 61 SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
+CI+ +DLD+MNIEI+RNTLYKAYLE FYKFC LGG TA+ M +L FEADRRA IT
Sbjct: 165 QDCISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIIT 224
Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKL-SY 179
INS GTEL+++DR KL+ + G LYP G +LA +D +QV+ V + YP Y+ +F S
Sbjct: 225 INSFGTELSKEDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSN 284
Query: 180 GESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRV 239
+ L+ F+E EVK LAF QFH+GVF+A+++L+EQE RN++WI+EC+AQ ++++
Sbjct: 285 PGDKTLEDRFFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKI 344
Query: 240 HDSVVFIF 247
D+ + IF
Sbjct: 345 -DNYIPIF 351
>sp|Q5R6I1|VA0D1_PONAB V-type proton ATPase subunit d 1 OS=Pongo abelii GN=ATP6V0D1 PE=2
SV=1
Length = 351
Score = 280 bits (716), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 133/248 (53%), Positives = 183/248 (73%), Gaps = 2/248 (0%)
Query: 1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
MIDNV+L++TGTLH+R + EL+ KCHPLG F+ + + +AQ ELY +LVDTPLA +F
Sbjct: 105 MIDNVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFF 164
Query: 61 SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
+CI+ +DLD+MNIEI+RNTLYKAYLE FYKFC LGG TA+ M +L FEADRRA IT
Sbjct: 165 QDCISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIIT 224
Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKL-SY 179
INS GTEL+++DR KL+ + G LYP G +LA +D +QV+ V + YP Y+ +F S
Sbjct: 225 INSFGTELSKEDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSN 284
Query: 180 GESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRV 239
+ L+ F+E EVK LAF QFH+GVF+A+++L+EQE RN++WI+EC+AQ ++++
Sbjct: 285 PGDKTLEDRFFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKI 344
Query: 240 HDSVVFIF 247
D+ + IF
Sbjct: 345 -DNYIPIF 351
>sp|P61421|VA0D1_HUMAN V-type proton ATPase subunit d 1 OS=Homo sapiens GN=ATP6V0D1 PE=1
SV=1
Length = 351
Score = 280 bits (716), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 133/248 (53%), Positives = 183/248 (73%), Gaps = 2/248 (0%)
Query: 1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
MIDNV+L++TGTLH+R + EL+ KCHPLG F+ + + +AQ ELY +LVDTPLA +F
Sbjct: 105 MIDNVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFF 164
Query: 61 SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
+CI+ +DLD+MNIEI+RNTLYKAYLE FYKFC LGG TA+ M +L FEADRRA IT
Sbjct: 165 QDCISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIIT 224
Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKL-SY 179
INS GTEL+++DR KL+ + G LYP G +LA +D +QV+ V + YP Y+ +F S
Sbjct: 225 INSFGTELSKEDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSN 284
Query: 180 GESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRV 239
+ L+ F+E EVK LAF QFH+GVF+A+++L+EQE RN++WI+EC+AQ ++++
Sbjct: 285 PGDKTLEDRFFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKI 344
Query: 240 HDSVVFIF 247
D+ + IF
Sbjct: 345 -DNYIPIF 351
>sp|P61420|VA0D1_BOVIN V-type proton ATPase subunit d 1 OS=Bos taurus GN=ATP6V0D1 PE=1
SV=1
Length = 351
Score = 280 bits (716), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 133/248 (53%), Positives = 183/248 (73%), Gaps = 2/248 (0%)
Query: 1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
MIDNV+L++TGTLH+R + EL+ KCHPLG F+ + + +AQ ELY +LVDTPLA +F
Sbjct: 105 MIDNVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFF 164
Query: 61 SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
+CI+ +DLD+MNIEI+RNTLYKAYLE FYKFC LGG TA+ M +L FEADRRA IT
Sbjct: 165 QDCISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIIT 224
Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKL-SY 179
INS GTEL+++DR KL+ + G LYP G +LA +D +QV+ V + YP Y+ +F S
Sbjct: 225 INSFGTELSKEDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSN 284
Query: 180 GESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRV 239
+ L+ F+E EVK LAF QFH+GVF+A+++L+EQE RN++WI+EC+AQ ++++
Sbjct: 285 PGDKTLEDRFFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKI 344
Query: 240 HDSVVFIF 247
D+ + IF
Sbjct: 345 -DNYIPIF 351
>sp|Q6P335|VA0D2_XENTR V-type proton ATPase subunit d 2 OS=Xenopus tropicalis GN=atp6v0d2
PE=2 SV=1
Length = 350
Score = 277 bits (709), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 124/244 (50%), Positives = 177/244 (72%), Gaps = 1/244 (0%)
Query: 1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
MIDN++L++TGTLH+R + EL+ KCHPLG F+ + + +AQ EL+ ++VDTPLA +F
Sbjct: 104 MIDNIILLITGTLHQRPISELVPKCHPLGSFEQMEAVNIAQTPAELFNAIIVDTPLADFF 163
Query: 61 SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
+C++ D+D+MNIEIMRN LYK+YLE FYKFC+KLGG T EIM +L FEADRRA IT
Sbjct: 164 QDCLSENDMDEMNIEIMRNKLYKSYLEAFYKFCKKLGGTTEEIMCPILEFEADRRAFVIT 223
Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYG 180
INS GTEL +++R KLY G L+P G L +D DQV+ E Y Y+++F + G
Sbjct: 224 INSFGTELNKEEREKLYPTCGRLFPEGLRMLGNADDQDQVKTTAEYYAEYKALFEGVGIG 283
Query: 181 ESQ-MLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRV 239
+ L+ F+E EVK LAF QFH+GVF+AY++L+EQE RN++WI+EC++Q ++++
Sbjct: 284 TGEKTLEDKFFEHEVKMNVLAFNNQFHFGVFYAYVKLKEQECRNIVWIAECISQRHRTKI 343
Query: 240 HDSV 243
++ +
Sbjct: 344 NNYI 347
>sp|O13753|VA0D_SCHPO V-type proton ATPase subunit d OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=vma6 PE=3 SV=1
Length = 343
Score = 275 bits (702), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 126/239 (52%), Positives = 176/239 (73%), Gaps = 3/239 (1%)
Query: 1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
MIDN++L++TGT++ +D +LLE+CHPLG F+++ L VA N+ ELY +VL++TPLAPYF
Sbjct: 101 MIDNIMLLLTGTVNGQDTHDLLERCHPLGWFETLPALCVATNVEELYSVVLIETPLAPYF 160
Query: 61 SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
+C++++DLD+ +IEI+RNTLYKAYLEDFY FC+K+G TA+ M +L FEADRRA+ IT
Sbjct: 161 KDCLSADDLDEQHIEIIRNTLYKAYLEDFYNFCKKIGACTADTMLPILEFEADRRAITIT 220
Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYG 180
INS GTEL++++R K+Y +FG LYP+ LA E+ V Y F + S
Sbjct: 221 INSFGTELSKEERAKMYPSFGRLYPFSTSILARAENAGDVENACSLVKEYSDFFDQNS-- 278
Query: 181 ESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRV 239
+ LD F E+EV+ LAF QQFHYG+ +A+++LREQEIRNL WI+EC++QNQ+ R
Sbjct: 279 -QKSLDDHFNEKEVELNKLAFLQQFHYGIVYAFLKLREQEIRNLTWIAECISQNQRDRA 336
>sp|P53659|VA0D_NEUCR V-type proton ATPase subunit d OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=vma-6 PE=3 SV=1
Length = 364
Score = 272 bits (696), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 132/261 (50%), Positives = 181/261 (69%), Gaps = 18/261 (6%)
Query: 1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
MIDNV L++TGTLHERD +ELLE+CHPLG F+++ L VA N+ ELY V+++TPLAPYF
Sbjct: 101 MIDNVALLITGTLHERDTRELLERCHPLGWFETMPVLCVATNIEELYNSVMIETPLAPYF 160
Query: 61 SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQK----LGGATAEIMSDLLAFEADRRA 116
++ +DLD++NIEI+RNTLYK YLEDFY F G TAE+MS+LL FEADRRA
Sbjct: 161 KSSLSLQDLDELNIEIVRNTLYKNYLEDFYHFVNTHPDMAGTPTAEVMSELLEFEADRRA 220
Query: 117 VNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSK 176
+NIT+NS GTEL++ DR+KLY NFG LYP G L+ +D + VR +E Y+S F
Sbjct: 221 INITLNSFGTELSKADRKKLYPNFGQLYPEGTLMLSRADDFEGVRLAVEGVADYKSFFDA 280
Query: 177 --------------LSYGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIR 222
E + L+ FY++E++ +AF +QF Y + +A+++LREQEIR
Sbjct: 281 AGLGGGPSGPGNMGGGGTEGKSLEDMFYQKEMEISKMAFTRQFTYAIVYAWVKLREQEIR 340
Query: 223 NLMWISECVAQNQKSRVHDSV 243
N+ WI+EC+AQNQK R+++ +
Sbjct: 341 NITWIAECIAQNQKERINNYI 361
>sp|Q8N8Y2|VA0D2_HUMAN V-type proton ATPase subunit d 2 OS=Homo sapiens GN=ATP6V0D2 PE=2
SV=1
Length = 350
Score = 267 bits (682), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 117/243 (48%), Positives = 174/243 (71%)
Query: 1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
MIDNV+L++ G L ++ V+E+L KCHPLG F + + +A+ +L+ +L++TPLAP+F
Sbjct: 105 MIDNVILLMNGALQKKSVKEILGKCHPLGRFTEMEAVNIAETPSDLFNAILIETPLAPFF 164
Query: 61 SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
+C++ LD++NIE++RN LYK+YLE FYKFC+ G TAE+M +L FEADRRA IT
Sbjct: 165 QDCMSENALDELNIELLRNKLYKSYLEAFYKFCKNHGDVTAEVMCPILEFEADRRAFIIT 224
Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYG 180
+NS GTEL+++DR LY FG LYP G LA ED DQ++ V + Y Y+ +F +
Sbjct: 225 LNSFGTELSKEDRETLYPTFGKLYPEGLRLLAQAEDFDQMKNVADHYGVYKPLFEAVGGS 284
Query: 181 ESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVH 240
+ L+ FYE EV+ LAF +QFHYGVF+AY++L+EQEIRN++WI+EC++Q +++++
Sbjct: 285 GGKTLEDVFYEREVQMNVLAFNRQFHYGVFYAYVKLKEQEIRNIVWIAECISQRHRTKIN 344
Query: 241 DSV 243
+
Sbjct: 345 SYI 347
>sp|Q5R7B7|VA0D2_PONAB V-type proton ATPase subunit d 2 OS=Pongo abelii GN=ATP6V0D2 PE=2
SV=2
Length = 350
Score = 262 bits (670), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 115/243 (47%), Positives = 172/243 (70%)
Query: 1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
MIDNV+ ++ G L ++ V+E+L KCHPLG F + + +A+ +L+ +L++TPLAP+F
Sbjct: 105 MIDNVIPLMNGALQKKSVKEILGKCHPLGRFTEMEAVNIAETPSDLFNAILIETPLAPFF 164
Query: 61 SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
+C++ L+++NIE++RN LYK+YLE FYKFC+ G TAE+M +L FEADRRA IT
Sbjct: 165 QDCMSENALNELNIELLRNKLYKSYLEAFYKFCKNHGDVTAEVMCPILEFEADRRAFIIT 224
Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYG 180
+NS GTEL+++DR LY FG LYP G LA ED DQ++ V + Y Y+ +F +
Sbjct: 225 LNSFGTELSKEDRETLYPTFGKLYPEGLRLLAQAEDFDQMKNVADHYGVYKPLFEAVGGS 284
Query: 181 ESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVH 240
+ L+ FYE EV+ LAF +QFHYGVF+AY++L+EQEIRN+ WI+EC++Q +++++
Sbjct: 285 GGKTLEDVFYEREVQMNVLAFNRQFHYGVFYAYVKLKEQEIRNIAWIAECISQRHRTKIN 344
Query: 241 DSV 243
+
Sbjct: 345 SYI 347
>sp|Q5FVL0|VA0D2_RAT V-type proton ATPase subunit d 2 OS=Rattus norvegicus GN=Atp6v0d2
PE=2 SV=1
Length = 350
Score = 261 bits (667), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 114/243 (46%), Positives = 175/243 (72%)
Query: 1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
MIDN++L++ G L ++ V+E+L KCHPLG F + + +A++ EL++ VLV+TPLAP+F
Sbjct: 105 MIDNIILLMNGALQKKSVKEVLAKCHPLGRFTEMEAVNIAESASELFKAVLVETPLAPFF 164
Query: 61 SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
+C++ LD++NIE++RN LYK+YLE FYKFC+ G TAE+M +L FEADRRA+ IT
Sbjct: 165 QDCMSENTLDELNIELLRNKLYKSYLEAFYKFCKDHGDVTAEVMCPILEFEADRRALIIT 224
Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYG 180
+NS GTEL+++DR L+ G LYP G LA ED + ++ V + Y Y+ +F +
Sbjct: 225 LNSFGTELSKEDRETLFPTCGKLYPEGLRLLAQAEDFEHMKRVADNYGVYKPLFDAVGGS 284
Query: 181 ESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVH 240
+ L+ FYE EV+ LAF +QFHYGVF+AY++L+EQE+RN++WI+EC++Q +++++
Sbjct: 285 GGKTLEDVFYEREVQMNVLAFNRQFHYGVFYAYVKLKEQEMRNIVWIAECISQRHRTKIN 344
Query: 241 DSV 243
+
Sbjct: 345 SYI 347
>sp|Q80SY3|VA0D2_MOUSE V-type proton ATPase subunit d 2 OS=Mus musculus GN=Atp6v0d2 PE=2
SV=2
Length = 350
Score = 259 bits (662), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 175/243 (72%)
Query: 1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
MIDN++L++ G L ++ V+E+L KCHPLG F + + +A+ +L++ VLV+TPLAP+F
Sbjct: 105 MIDNIILLMNGALQKKSVKEVLAKCHPLGRFTEMEAVNIAETPSDLFKAVLVETPLAPFF 164
Query: 61 SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
+C++ LD++NIE++RN LYK+YLE FYKFC+ G TA++M +L FEADRRA+ IT
Sbjct: 165 QDCMSENTLDELNIELLRNKLYKSYLEAFYKFCKDHGDVTADVMCPILEFEADRRALIIT 224
Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYG 180
+NS GTEL+++DR L+ G LYP G LA ED +Q++ V + Y Y+ +F +
Sbjct: 225 LNSFGTELSKEDRETLFPTCGRLYPEGLRLLAQAEDFEQMKRVADNYGVYKPLFDAVGGS 284
Query: 181 ESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVH 240
+ L+ FYE EV+ LAF +QFHYGVF+AY++L+EQE+RN++WI+EC++Q +++++
Sbjct: 285 GGKTLEDVFYEREVQMNVLAFNRQFHYGVFYAYVKLKEQEMRNIVWIAECISQRHRTKIN 344
Query: 241 DSV 243
+
Sbjct: 345 SYI 347
>sp|Q2KJB6|VA0D2_BOVIN V-type proton ATPase subunit d 2 OS=Bos taurus GN=ATP6V0D2 PE=2
SV=1
Length = 351
Score = 254 bits (649), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 115/244 (47%), Positives = 172/244 (70%), Gaps = 1/244 (0%)
Query: 1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
MIDNV+L++ G L + V+++L KCHPLG F + + +A+ +L+ +LV+TPLAP+F
Sbjct: 105 MIDNVILLMNGALQNKPVKDVLVKCHPLGHFTEMEAVNIAETPSDLFNAILVETPLAPFF 164
Query: 61 SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
+C + LD++NIEI+RN LYK+Y+E FYKFC+ G TAE+M +L FEADRRA IT
Sbjct: 165 QDCTSENALDELNIEILRNKLYKSYIEAFYKFCKNHGDVTAEVMCPILEFEADRRAFIIT 224
Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLS-Y 179
+NS GTEL+++DR LY G L+P G LA ED +Q++ V + Y Y+ +F +S
Sbjct: 225 LNSFGTELSKEDRETLYPTCGKLHPEGLRLLAQAEDFEQMKRVADSYGVYKPLFEAVSDS 284
Query: 180 GESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRV 239
+ L+ FYE EV+ LAF +QFHYGVF+AY +L+EQE+RN++WI+EC++Q Q++++
Sbjct: 285 SGGKTLEDVFYEREVQMNVLAFNRQFHYGVFYAYTKLKEQEMRNIVWIAECISQRQRTKI 344
Query: 240 HDSV 243
+ +
Sbjct: 345 NSYI 348
>sp|P32366|VA0D_YEAST V-type proton ATPase subunit d OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=VMA6 PE=1 SV=2
Length = 345
Score = 231 bits (590), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 115/246 (46%), Positives = 163/246 (66%), Gaps = 9/246 (3%)
Query: 1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
MIDNV L++TGT+H+RD E+L++CHPLG FD++ TL+VA ++ LY VLVDTPLAPYF
Sbjct: 103 MIDNVALMITGTIHDRDKGEILQRCHPLGWFDTLPTLSVATDLESLYETVLVDTPLAPYF 162
Query: 61 SECI-TSEDLDDMNIEIMRNTLYKAYLEDFYKF-CQKLGGATAEIMSDLLAFEADRRAVN 118
C T+E+LDDMNIEI+RN LYKAYLEDFY F +++ E M LL FEADRR++N
Sbjct: 163 KNCFDTAEELDDMNIEIIRNKLYKAYLEDFYNFVTEEIPEPAKECMQTLLGFEADRRSIN 222
Query: 119 ITINSI-GTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKL 177
I +NS+ +++ D + L N G LYP LA +D + VR + Y+
Sbjct: 223 IALNSLQSSDIDPDLKSDLLPNIGKLYPLATFHLAQAQDFEGVRAALANVYEYRGFL--- 279
Query: 178 SYGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKS 237
E+ L+ FY+ E++ AF QQF +A+M+ +EQE+RN+ WI+EC+AQNQ+
Sbjct: 280 ---ETGNLEDHFYQLEMELCRDAFTQQFAISTVWAWMKSKEQEVRNITWIAECIAQNQRE 336
Query: 238 RVHDSV 243
R+++ +
Sbjct: 337 RINNYI 342
>sp|Q9VCQ3|VA0D2_DROME Probable V-type proton ATPase subunit d 2 OS=Drosophila
melanogaster GN=VhaAC39-2 PE=2 SV=1
Length = 350
Score = 206 bits (524), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 96/242 (39%), Positives = 151/242 (62%), Gaps = 2/242 (0%)
Query: 1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
MIDNV L+V G + R ++ LL CHPLG FD + + VA N EL+ VL+DTP+A +
Sbjct: 101 MIDNVALLVAGLNNHRSMKRLLRMCHPLGEFDQLGAIEVASNSAELFDAVLIDTPIARFV 160
Query: 61 SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
+ E L +++EI+R LY+AYLE FY +C +LGG TA +M++LL+FEADRR + I
Sbjct: 161 PRDLPMESLRYLDVEIVRAHLYRAYLEKFYAYCSQLGGNTANVMTNLLSFEADRRTITIA 220
Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYG 180
+N+IG+++ +R K++ G L ++ D D++R V + Y +F L
Sbjct: 221 VNAIGSDIIPKERLKMFPTCGYLPKIALASMSTLNDTDKIRDVCNVFDGYGKMFDNLERD 280
Query: 181 ESQM--LDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSR 238
M L+ F E K+ F QQ+H+G+F+++++L++ E+RN++WISEC+AQ Q R
Sbjct: 281 SDGMITLEDRFLMMEAKKNVQTFLQQYHFGIFYSFIKLKQLEVRNIVWISECIAQRQTDR 340
Query: 239 VH 240
++
Sbjct: 341 IN 342
>sp|Q9UXU5|VATC_PYRAB V-type ATP synthase subunit C OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=atpC PE=3 SV=1
Length = 370
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 101/240 (42%), Gaps = 13/240 (5%)
Query: 2 IDNVVLIVTGTLHERDVQELLEKCHPLG-MFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
+ N++ +V L Q+ + P G M + +A A+ M E+ LV+++ +
Sbjct: 127 VRNIINVVKAKLSNMPPQDFI---MPAGKMLQKVKAMAEAKTMEEM--LVILE---GTDY 178
Query: 61 SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
E + L+++ ++ LYK + ++ G I S+ + D ++
Sbjct: 179 EEPLRRLLLNEITLQEFELELYKVHYSKLLRYVNSRKGEEKIIASEFVNMLIDYTNISTL 238
Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVME--KYPP-YQSIFSKL 177
+ + + L ++D RKL G L E + ED+ G +E KY + + +
Sbjct: 239 LRAKLSSLAQEDIRKLIIPGGTLSKSTIEAMINSEDVVMALGELEGTKYGEVLREVREAV 298
Query: 178 SYGESQMLDKAFYEEEVKRLC-LAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQK 236
G + ++ A + ++R+ L+ V AY+ +E E+R L I++ + K
Sbjct: 299 ESGNIESVEIALRKYILRRMKELSQFYPLSVAVAVAYLLQKESEVRKLKAIAKLIEDGVK 358
>sp|A6QBQ5|IF2_SULNB Translation initiation factor IF-2 OS=Sulfurovum sp. (strain
NBC37-1) GN=infB PE=3 SV=1
Length = 906
Score = 32.7 bits (73), Expect = 2.4, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 15/103 (14%)
Query: 90 YKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGL----LYP 145
Y+F +K+ + E++ L A + +T N L++D+ L FG+ + P
Sbjct: 334 YEFAEKVNRSVGEVVKVLFAL-----GMMVTKNDF---LSKDEIEILAEEFGVEVSTMNP 385
Query: 146 YGHEELAVCEDIDQVRGV-MEKYPPYQSIFSKLSYGESQMLDK 187
+EL + D+V +E+ PP +I + +G++ +LDK
Sbjct: 386 L--DELDYVQAYDEVEDTHLEERPPVITIMGHVDHGKTSLLDK 426
>sp|O57726|VATC_PYRHO V-type ATP synthase subunit C OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=atpC PE=3 SV=1
Length = 370
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 48/242 (19%), Positives = 98/242 (40%), Gaps = 17/242 (7%)
Query: 2 IDNVVLIVTGTLHERDVQELLEKCHPLG-MFDSIATLAVAQNMRELYRLVLVDTPLAPYF 60
+ N+ ++ L Q+ + P G MF + + ++ M E+ LV+++ +
Sbjct: 127 VRNITNVIKAKLSNLPPQDFI---IPAGRMFPKVKAMVESKTMEEI--LVILE---GTEY 178
Query: 61 SECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120
E + L +++++ LYK Y K+ G I + + D R ++I
Sbjct: 179 EEPLRKLLLKEIDLQAFELELYKIYYSKLLKYASSRKGEEKLISEEFIKMLIDYRNISII 238
Query: 121 INSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLSYG 180
+ + + + ++ + L G+L E + ED+ G +E ++
Sbjct: 239 LRAKLSGMPSEEIKSLLIPGGMLSRAVLESMLSSEDVMMALGELEGTRYGDALKDVREAV 298
Query: 181 ESQMLDKAFYEEEVKRLCLAFEQ---QFH---YGVFFAYMRLREQEIRNLMWISECVAQN 234
E +DK EE ++R L + QF+ V Y+ RE E+R L +++ +
Sbjct: 299 EGGRIDKV--EEALRRYILNRMKELSQFYPLSVAVALTYLLERESEVRKLKAVAKLIEDK 356
Query: 235 QK 236
K
Sbjct: 357 AK 358
>sp|Q5RCU4|SOX6_PONAB Transcription factor SOX-6 OS=Pongo abelii GN=SOX6 PE=2 SV=1
Length = 787
Score = 32.3 bits (72), Expect = 3.6, Method: Composition-based stats.
Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 23/156 (14%)
Query: 84 AYLEDFYKFCQKLGGAT---AEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNF 140
A L+ +Y C GGAT A + D + + +N+ +D+RRK+ F
Sbjct: 546 AKLQQYY--CWPTGGATVAEARVYRDARGRASSEPHIKRPMNAFMV-WAKDERRKILQAF 602
Query: 141 GLLYPYGHEELAVCEDIDQVRGV-------MEKYPPYQSIFSKLSYGESQMLDKAFYEEE 193
P H +I ++ G EK P Y+ ++LS + Y+
Sbjct: 603 ----PDMHNS-----NISKILGSRWKSMSNQEKQPYYEEQ-ARLSKIHLEKYPNYKYKPR 652
Query: 194 VKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISE 229
KR C+ ++ G + MR R QE+R + +
Sbjct: 653 PKRTCIVDGKKLRIGEYKQLMRSRRQEMRQFFTVGQ 688
>sp|P40645|SOX6_MOUSE Transcription factor SOX-6 OS=Mus musculus GN=Sox6 PE=1 SV=2
Length = 827
Score = 32.3 bits (72), Expect = 3.6, Method: Composition-based stats.
Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 23/156 (14%)
Query: 84 AYLEDFYKFCQKLGGAT---AEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNF 140
A L+ +Y C GGAT A + D + + +N+ +D+RRK+ F
Sbjct: 586 AKLQQYY--CWPTGGATVAEARVYRDARGRASSEPHIKRPMNAFMV-WAKDERRKILQAF 642
Query: 141 GLLYPYGHEELAVCEDIDQVRGV-------MEKYPPYQSIFSKLSYGESQMLDKAFYEEE 193
P H +I ++ G EK P Y+ ++LS + Y+
Sbjct: 643 ----PDMHNS-----NISKILGSRWKSMSNQEKQPYYEEQ-ARLSKIHLEKYPNYKYKPR 692
Query: 194 VKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISE 229
KR C+ ++ G + MR R QE+R + +
Sbjct: 693 PKRTCIVDGKKLRIGEYKQLMRSRRQEMRQFFTVGQ 728
>sp|P35712|SOX6_HUMAN Transcription factor SOX-6 OS=Homo sapiens GN=SOX6 PE=1 SV=3
Length = 828
Score = 32.3 bits (72), Expect = 3.6, Method: Composition-based stats.
Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 23/156 (14%)
Query: 84 AYLEDFYKFCQKLGGAT---AEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNF 140
A L+ +Y C GGAT A + D + + +N+ +D+RRK+ F
Sbjct: 587 AKLQQYY--CWPTGGATVAEARVYRDARGRASSEPHIKRPMNAFMV-WAKDERRKILQAF 643
Query: 141 GLLYPYGHEELAVCEDIDQVRGV-------MEKYPPYQSIFSKLSYGESQMLDKAFYEEE 193
P H +I ++ G EK P Y+ ++LS + Y+
Sbjct: 644 ----PDMHNS-----NISKILGSRWKSMSNQEKQPYYEEQ-ARLSKIHLEKYPNYKYKPR 693
Query: 194 VKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISE 229
KR C+ ++ G + MR R QE+R + +
Sbjct: 694 PKRTCIVDGKKLRIGEYKQLMRSRRQEMRQFFTVGQ 729
>sp|B3EL67|ACCA_CHLPB Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
OS=Chlorobium phaeobacteroides (strain BS1) GN=accA PE=3
SV=1
Length = 335
Score = 31.6 bits (70), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 98 GATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGH 148
G ++ E + R + T+ IG + RD + LY NFG+ P G+
Sbjct: 102 GDDKALIGGFARIEDEERDFSQTVMVIGHQKGRDTKSNLYRNFGMSQPEGY 152
>sp|A5UMW0|RADA_METS3 DNA repair and recombination protein RadA OS=Methanobrevibacter
smithii (strain PS / ATCC 35061 / DSM 861) GN=radA PE=3
SV=1
Length = 311
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 15 ERDVQELLEKCHPLGMFDSIATLAVAQNMREL------YRLVLVDTPLAPYFSECITSED 68
E D+ E+L+K H F+S + +A+ + EL +LV+VD+ +A + +E + E
Sbjct: 156 ELDIDEVLQKIHVARAFNSSHQILMAEKINELIQQGNNIKLVIVDSLMAHFRAEYVGRES 215
Query: 69 L 69
L
Sbjct: 216 L 216
>sp|B4S4A3|ACCA_PROA2 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413)
GN=accA PE=3 SV=1
Length = 335
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 86 LEDFYKFCQKLGGATAE-IMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLY 144
++DF + C A + I+ E + + T+ IG + RD + LY NFG+
Sbjct: 89 MQDFIELCGDRHFADDKAIVGGFARIEDSEASFSQTVMVIGHQKGRDTKSNLYRNFGMAQ 148
Query: 145 PYGH 148
P G+
Sbjct: 149 PEGY 152
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.139 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,299,812
Number of Sequences: 539616
Number of extensions: 3474695
Number of successful extensions: 11644
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 11598
Number of HSP's gapped (non-prelim): 39
length of query: 247
length of database: 191,569,459
effective HSP length: 114
effective length of query: 133
effective length of database: 130,053,235
effective search space: 17297080255
effective search space used: 17297080255
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)