Query 025862
Match_columns 247
No_of_seqs 104 out of 219
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 10:22:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025862.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025862hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2957 Vacuolar H+-ATPase V0 100.0 2E-109 5E-114 753.8 17.4 246 1-246 105-350 (350)
2 COG1527 NtpC Archaeal/vacuolar 100.0 3.8E-44 8.3E-49 335.3 18.5 239 1-245 100-345 (346)
3 PF01992 vATP-synt_AC39: ATP s 100.0 5.9E-37 1.3E-41 279.3 10.7 239 2-244 92-337 (337)
4 TIGR02923 AhaC ATP synthase A1 100.0 5.5E-34 1.2E-38 261.1 21.1 229 1-235 98-333 (343)
5 PRK01198 V-type ATP synthase s 100.0 7.6E-31 1.7E-35 240.8 20.4 229 1-235 104-341 (352)
6 TIGR02923 AhaC ATP synthase A1 99.5 3E-13 6.5E-18 124.2 17.9 204 33-243 24-231 (343)
7 PRK01198 V-type ATP synthase s 99.4 1.5E-11 3.2E-16 113.2 18.0 201 33-241 30-237 (352)
8 PF01992 vATP-synt_AC39: ATP s 98.6 1.5E-07 3.3E-12 86.0 7.5 200 33-244 18-226 (337)
9 COG1527 NtpC Archaeal/vacuolar 98.1 4.7E-05 1E-09 72.2 11.8 133 3-139 209-345 (346)
10 PF10962 DUF2764: Protein of u 95.1 0.14 3E-06 47.4 9.1 162 26-214 68-239 (271)
11 COG0315 MoaC Molybdenum cofact 51.5 6.8 0.00015 33.7 0.8 22 9-30 60-81 (157)
12 cd00528 MoaC MoaC family. Memb 41.6 8.1 0.00018 32.5 -0.2 22 9-30 46-67 (136)
13 cd01420 MoaC_PE MoaC family, p 40.8 9.2 0.0002 32.3 0.0 22 9-30 46-67 (140)
14 KOG2957 Vacuolar H+-ATPase V0 40.7 3.4E+02 0.0075 26.1 14.2 161 36-215 35-198 (350)
15 TIGR00581 moaC molybdenum cofa 38.7 12 0.00026 31.9 0.4 24 9-32 57-80 (147)
16 PRK12343 putative molybdenum c 38.0 12 0.00026 32.1 0.3 22 9-30 54-75 (151)
17 cd01419 MoaC_A MoaC family, ar 37.8 11 0.00024 31.9 0.0 22 9-30 46-67 (141)
18 PRK09364 moaC molybdenum cofac 34.2 16 0.00034 31.6 0.4 22 9-30 60-81 (159)
19 KOG4427 E3 ubiquitin protein l 33.1 16 0.00035 38.8 0.4 48 45-92 816-871 (1096)
20 PF12554 MOZART1: Mitotic-spin 32.1 34 0.00074 23.8 1.8 31 104-134 11-41 (48)
21 PLN02375 molybderin biosynthes 30.0 18 0.00039 33.5 0.1 22 9-30 172-193 (270)
22 PF01967 MoaC: MoaC family; I 29.7 11 0.00025 31.6 -1.1 22 9-30 46-67 (136)
23 PF01372 Melittin: Melittin; 27.4 54 0.0012 20.0 1.8 14 207-220 13-26 (26)
24 PRK14500 putative bifunctional 27.0 25 0.00055 33.5 0.5 22 9-30 60-81 (346)
25 PHA03154 hypothetical protein; 26.1 43 0.00093 31.5 1.8 71 45-117 207-277 (304)
26 PF12209 SAC3: Leucine permeas 25.5 48 0.001 25.2 1.7 50 43-93 6-58 (79)
27 PF08696 Dna2: DNA replication 25.5 1.2E+02 0.0025 26.8 4.4 58 48-109 89-146 (209)
28 PF12249 AftA_C: Arabinofurano 25.2 42 0.0009 29.5 1.5 33 25-58 79-115 (178)
29 KOG3908 Queuine-tRNA ribosyltr 23.6 66 0.0014 30.9 2.6 32 215-246 163-194 (396)
30 PRK03604 moaC bifunctional mol 23.3 25 0.00055 33.2 -0.2 22 9-30 56-77 (312)
31 cd07650 F-BAR_Syp1p_like The F 22.4 1.1E+02 0.0023 27.3 3.6 61 57-120 159-219 (228)
32 COG0134 TrpC Indole-3-glycerol 20.6 61 0.0013 29.9 1.7 46 5-54 132-177 (254)
33 PRK14499 molybdenum cofactor b 20.4 37 0.00081 32.0 0.3 22 9-30 59-80 (308)
No 1
>KOG2957 consensus Vacuolar H+-ATPase V0 sector, subunit d [Energy production and conversion]
Probab=100.00 E-value=2.2e-109 Score=753.81 Aligned_cols=246 Identities=63% Similarity=1.073 Sum_probs=241.9
Q ss_pred CchhHHHHHHhhhcCCChHHHHhhhcCCCCcccchhhhhcCCHHHHHHHHHhcCCCchhhhhccCccccccccHHHHHHH
Q 025862 1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNT 80 (247)
Q Consensus 1 MIdNv~lLi~g~~~~r~~~ell~~chPLG~F~~l~~l~va~~~~eLy~~vLvdTPla~yf~~~l~~~dlde~nieiirn~ 80 (247)
|||||++|||||+|+||+.|+++||||||||++|+||+||+|++|||++||||||+||||.+|++++|||++|||||||+
T Consensus 105 mIdNv~lLitgtl~~r~~~ell~kChpLG~F~~l~ai~vA~n~~ely~~vlvdTpla~~F~dc~~~~dld~mniEIiRn~ 184 (350)
T KOG2957|consen 105 MIDNVILLITGTLHDRDVGELLEKCHPLGSFDQLEAIKVASNPAELYNAVLVDTPLAPYFEDCLSEEDLDEMNIEIIRNT 184 (350)
T ss_pred HHhHHHHHHhccccCCCHHHHHHhcCCcCchhhhhhhhhcCCHHHHHHHHHhcCcchHHHHhhcCHhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHhhHHHHHHHHHHHHhcCCCCCHHhhhccccCCCCCChhhHHhhccCCChHHH
Q 025862 81 LYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQV 160 (247)
Q Consensus 81 L~K~yLEdfy~fc~~lg~~t~evM~~iL~fEADrr~I~ItlNs~~~~L~~~~r~~l~p~~G~L~p~~~~~La~a~d~e~v 160 (247)
|||+|||+||+||+++||.|+++||+||+||||||+|+||+||||++|++++|++|||+||+|||.|++.||+|+|.|+|
T Consensus 185 lYKaylE~fY~fc~~~g~~tae~M~~iL~fEaDRRai~ItiNs~gteL~~~~R~kL~P~~g~lyp~~~~~La~aed~e~v 264 (350)
T KOG2957|consen 185 LYKAYLEDFYNFCKKLGGATAEVMCEILAFEADRRAIIITINSFGTELSKEDRAKLYPNCGKLYPRGLELLARAEDYEQV 264 (350)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHhhcccceeEEEehhhcccccChhHHHHhCCCcCccChhHHHHHHhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccHHhhhhcCCCCCCcHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHhhhHHHHHHHhhhccccccc
Q 025862 161 RGVMEKYPPYQSIFSKLSYGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVH 240 (247)
Q Consensus 161 ~~~l~~~~~Y~~i~~~~~~~~~~~lEd~f~~~ev~~~~~af~qqf~~g~fyaylklKEqEIRNi~WIaecI~q~~~~~i~ 240 (247)
|+|++.+++|+.+|+..+.++.++|||+|+++||++|++||.|||||||||||+||||||||||+||||||+||||+|||
T Consensus 265 k~v~~~~~~Y~~~fd~~~~~g~ktLed~f~e~Ev~~~~~aF~qqfh~gvfyay~KlKEQEiRNI~WIAECIaQnqr~ri~ 344 (350)
T KOG2957|consen 265 KNVLSTYYEYKALFDKDGGPGSKTLEDVFYEHEVKLNVLAFLQQFHFGVFYAYMKLKEQEIRNIVWIAECIAQNQRDRID 344 (350)
T ss_pred HHHHHhhhhhHhHhhcCCCCccccHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 99999999999999877655558999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q 025862 241 DSVVFI 246 (247)
Q Consensus 241 ~~i~~~ 246 (247)
+||||.
T Consensus 345 ~~ipi~ 350 (350)
T KOG2957|consen 345 NYIPIM 350 (350)
T ss_pred ccccCC
Confidence 999984
No 2
>COG1527 NtpC Archaeal/vacuolar-type H+-ATPase subunit C [Energy production and conversion]
Probab=100.00 E-value=3.8e-44 Score=335.27 Aligned_cols=239 Identities=27% Similarity=0.370 Sum_probs=217.0
Q ss_pred CchhHHHHHHhhhcCCChHHHHhhhcCCCCcccchhhhhcCCHHHHHHHHHhcCCCchhhhhccCccccccccHHHHHHH
Q 025862 1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNT 80 (247)
Q Consensus 1 MIdNv~lLi~g~~~~r~~~ell~~chPLG~F~~l~~l~va~~~~eLy~~vLvdTPla~yf~~~l~~~dlde~nieiirn~ 80 (247)
||+||+.||+||.+| +.+++...|||+|+|+.+++++.|+|++|++..+.+.|+++||+..|. ...+..|+++|++.
T Consensus 100 di~NIk~li~ak~~g-~~~~~~~~liP~G~~~~~~~l~~a~t~eev~~~~~~~~y~~~~~~~~~--~y~~~~~i~~le~~ 176 (346)
T COG1527 100 DIENIKTLLRAKLAG-DPEEISDLLIPLGDFETLLTLAEAKTMEEVVETLEGTTYLAPLEEALR--DYEDTGDIEPLENA 176 (346)
T ss_pred HHHHHHHHHHHHHhC-CccchHHhcCcCchHHHHHHHHhhcchHHHHHHHhcCchhHHHHHHHH--HHhhcCCHHHHHHH
Confidence 689999999999999 999999999999999999999999999999999999999999876665 22455599999999
Q ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHhhHHHHHHHHHHHHhcCCCCCHHhhhccccCCCCCChhhHHhhccCCChHHH
Q 025862 81 LYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQV 160 (247)
Q Consensus 81 L~K~yLEdfy~fc~~lg~~t~evM~~iL~fEADrr~I~ItlNs~~~~L~~~~r~~l~p~~G~L~p~~~~~La~a~d~e~v 160 (247)
|||+|+|+|+++|++..|.. +|.+++++|+|++||+|++|+++.+++.+.+..++|..|.|+++.+..|+.++|+.+|
T Consensus 177 Ldk~Yye~l~~~~~~~~~~~--~~~~~~~~eID~~Ni~~~lr~k~~~~~~e~~~~li~~gg~l~~~~~~~l~~~ed~~~~ 254 (346)
T COG1527 177 LDKAYYEDLLRSVNSEKGDE--LLREFLRLEIDRRNIKTALRGKASELSEELMESLIPDGGSLDASALRDLAEAEDILDV 254 (346)
T ss_pred HHHHHHHHHHHhcccccchH--HHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhcCCCccCCHHHHHHHHhcccHHHH
Confidence 99999999999999888853 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccHHhhhhc----CCCCCCcHHHHHHHHHHHHHHHHhhhhcchH--HHHHHHHHHHHHhhhHHHHHHHhhhc
Q 025862 161 RGVMEKYPPYQSIFSKL----SYGESQMLDKAFYEEEVKRLCLAFEQQFHYG--VFFAYMRLREQEIRNLMWISECVAQN 234 (247)
Q Consensus 161 ~~~l~~~~~Y~~i~~~~----~~~~~~~lEd~f~~~ev~~~~~af~qqf~~g--~fyaylklKEqEIRNi~WIaecI~q~ 234 (247)
.+++++++ |.+++... ..|+..++++++...++..+..+|.+++.+| |+++|++.|||||+||.|||+|++|+
T Consensus 255 ~~~l~~t~-yg~~l~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~a~~~p~s~~~v~~yl~~KE~EV~NLr~Ia~~k~~~ 333 (346)
T COG1527 255 LEALEGTS-YGDALSEYREEYEEGGSIAVFEEALRKALLKRAKEFAQYYPLSVGPVLAYLLRKEIEVKNLRWIAEGKANG 333 (346)
T ss_pred HHHcccCc-hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999998 88777443 2344468888888888888877788777777 99999999999999999999999999
Q ss_pred c-cccccccccc
Q 025862 235 Q-KSRVHDSVVF 245 (247)
Q Consensus 235 ~-~~~i~~~i~~ 245 (247)
+ +++|.+.+++
T Consensus 334 ~~~e~i~~~~~~ 345 (346)
T COG1527 334 LPREEIKELLVP 345 (346)
T ss_pred CCHHHHHHHhcc
Confidence 9 9999887764
No 3
>PF01992 vATP-synt_AC39: ATP synthase (C/AC39) subunit; InterPro: IPR002843 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit C from the A0 complex of A-ATPases, and subunits C and D from the V0 complex of V-ATPases, all of which are involved in the translocation of protons across a membrane. There is more than one type of D subunit in V-ATPases, where the D1 subunit is ubiquitous, while the D2 subunit has limited tissue expressivity, possibly to account for differential functions, targeting or regulation of V-ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 1R5Z_A 1V9M_A 3J0J_M.
Probab=100.00 E-value=5.9e-37 Score=279.30 Aligned_cols=239 Identities=27% Similarity=0.405 Sum_probs=184.4
Q ss_pred chhHHHHHHhhhcCCChHHHHhhhcCCC-CcccchhhhhcCCHHHHHHHHHhcCCCchhhhhccCccccccccHHHHHHH
Q 025862 2 IDNVVLIVTGTLHERDVQELLEKCHPLG-MFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNT 80 (247)
Q Consensus 2 IdNv~lLi~g~~~~r~~~ell~~chPLG-~F~~l~~l~va~~~~eLy~~vLvdTPla~yf~~~l~~~dlde~nieiirn~ 80 (247)
|+|++.+|+|+.+|++.+++...+||+| .++.+..|..++|++|+. .+|.+||+++++.++.+ ++++.++..+..+
T Consensus 92 i~nik~ilr~~~~g~~~~~~~~~l~~~g~~~~~l~~l~~~~~~~e~~-~~L~~t~y~~~l~~~~~--~~~~~~~~~~~~~ 168 (337)
T PF01992_consen 92 IHNIKTILRAKLSGRDLEEILELLIPLGFSFEDLKELLSAKDVEELI-EALKGTPYYEVLRQALE--DYEQQDFFYIEEA 168 (337)
T ss_dssp HHHHHHHHHHHHHT--GGGS---S-SS-HHHHHHHHSSSHHHHHHHH--HTTT-THHHHHHHHHH--H-----HHHHHHH
T ss_pred HHHHHHHHHHHHhCcCHHHHHHhccccCCChhhHHHHhccCCHHHHH-HHhcCcchHHHHHHHHH--hhcccchHHHHHH
Confidence 7999999999999999999999999999 444799999999999999 55599999999999987 5888999999999
Q ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHhhHHHHHHHHHHHHhcCCCCCHHhhhccccCCCCCChhhHHhhccCCChHHH
Q 025862 81 LYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQV 160 (247)
Q Consensus 81 L~K~yLEdfy~fc~~lg~~t~evM~~iL~fEADrr~I~ItlNs~~~~L~~~~r~~l~p~~G~L~p~~~~~La~a~d~e~v 160 (247)
|++.|+++.++.+.+.+|.+++++.+++++++|..||.++++++..++++++...++|.+|.+.++.++.|++++|.+++
T Consensus 169 l~~~yy~~~~~~~~~~~~~~~~~l~~~~~~~iD~~Ni~~~~R~k~~~~~~~~i~~ll~~~g~l~~~~l~~l~~~~~~~~~ 248 (337)
T PF01992_consen 169 LDDRYYEDLLKAAKKLSGSEREILRELLGMEIDLTNIKTILRAKKYGLSPEEIKQLLPPGGRLSKDRLKALAEAEDVEEF 248 (337)
T ss_dssp HHHHHHHHHHHHHH---TSS-HHHHHHHHHHHHHHHHHHHHHTTTS---GGGT-----SS-SS--H-HHHHHHHTT-GGG
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHhhhhccCCCCCeeCHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccHHhhhhcCCC----CCCcHHHHHHHHHHH-HHHHHhhhhcchHHHHHHHHHHHHHhhhHHHHHHHhhhcc
Q 025862 161 RGVMEKYPPYQSIFSKLSYG----ESQMLDKAFYEEEVK-RLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQ 235 (247)
Q Consensus 161 ~~~l~~~~~Y~~i~~~~~~~----~~~~lEd~f~~~ev~-~~~~af~qqf~~g~fyaylklKEqEIRNi~WIaecI~q~~ 235 (247)
...+++++ |...+...... +...+|+++..+.++ ..+.++..||++||++||+.+||+||+||+||++|+.++.
T Consensus 249 ~~~l~~t~-y~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~i~aYl~~ke~Ei~nL~~I~~g~~~gl 327 (337)
T PF01992_consen 249 LEALSGTP-YGKLLSDAEEEYEETSLSELERALDRYLLKKALRLSRRSPFSIGPILAYLILKEIEIRNLRTIIEGKRYGL 327 (337)
T ss_dssp GGS-TTST-TGGGTT--S-------HHHHHHHHHHHHHH-HHHGGTT-SSSTHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHhcCc-hHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999 77777554311 235899999999999 5599999999999999999999999999999999999988
Q ss_pred c-cccccccc
Q 025862 236 K-SRVHDSVV 244 (247)
Q Consensus 236 ~-~~i~~~i~ 244 (247)
. ++|.++++
T Consensus 328 ~~e~I~~~lv 337 (337)
T PF01992_consen 328 SPEEIRERLV 337 (337)
T ss_dssp -CHHHHHHC-
T ss_pred CHHHHHhhcC
Confidence 7 77776653
No 4
>TIGR02923 AhaC ATP synthase A1, C subunit. The A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The C subunit is part of the hydrophilic A1 "stalk" complex (AhaABCDEFG) which is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex.
Probab=100.00 E-value=5.5e-34 Score=261.15 Aligned_cols=229 Identities=20% Similarity=0.275 Sum_probs=210.0
Q ss_pred CchhHHHHHHhhhcCCChHHHHhhhcCCCCccc--chhhhhcCCHHHHHHHHHhcCCCchhhhhccCccccccccHHHHH
Q 025862 1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDS--IATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMR 78 (247)
Q Consensus 1 MIdNv~lLi~g~~~~r~~~ell~~chPLG~F~~--l~~l~va~~~~eLy~~vLvdTPla~yf~~~l~~~dlde~nieiir 78 (247)
+|+||+.+++|+.+|++.+++.+.++|.|.|+. +.++..++|++|+.+ +|.+||+++++.+++ + +..++..++
T Consensus 98 di~Nik~ilR~~~~g~~~~~i~~~l~~~g~~~~~~l~~l~~~~~~~e~~~-~L~~t~y~~~l~~~~-~---~~~~l~~~E 172 (343)
T TIGR02923 98 DVWNIKTLIRAKYANASAEEVEDLLIPAGEFLEKRIKELAEAKTIEEIVE-ALEGTPYYGPLQEAL-A---GNGDLSPIE 172 (343)
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHhccccccCHHHHHHHHcCCCHHHHHH-HcCCCccHHHHHHHH-h---cCCCHHHHH
Confidence 479999999999999999999999999999994 899999999999999 559999999999988 2 234889999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhHHHHHHHHHHHHhcCCCCCHHhhhccccCCC-CCChhhHHhhccCCCh
Q 025862 79 NTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFG-LLYPYGHEELAVCEDI 157 (247)
Q Consensus 79 n~L~K~yLEdfy~fc~~lg~~t~evM~~iL~fEADrr~I~ItlNs~~~~L~~~~r~~l~p~~G-~L~p~~~~~La~a~d~ 157 (247)
+.|+++|++++++.|+..++.+..++..+++.|.|..+|+++++++..++++++..++++.+| .+.++.+..|++|+|.
T Consensus 173 ~~Ld~~y~~~l~~~~~~~~~~~~~~l~~~~~~eiD~~Nl~~ilr~k~~~~~~e~i~~~li~~g~~l~~~~l~~l~~~~~~ 252 (343)
T TIGR02923 173 NELDRMYYEKLLKYVGSPSDDETKLFTEFIKTEVDIRNLKTLLRLKAAGLSPDEIMPYTIPGGYELDEEKLAPLAHIESI 252 (343)
T ss_pred HHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhccCcccccCHHHHHHHHcCCCH
Confidence 999999999999999877777788999999999999999999999988999999999999999 6799999999999999
Q ss_pred HHHHHHhhcCcccHHhhhhc---CCCCCCcHHHHHHHHHHHHHH-HHhhhhcchHHHHHHHHHHHHHhhhHHHHHHHhhh
Q 025862 158 DQVRGVMEKYPPYQSIFSKL---SYGESQMLDKAFYEEEVKRLC-LAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQ 233 (247)
Q Consensus 158 e~v~~~l~~~~~Y~~i~~~~---~~~~~~~lEd~f~~~ev~~~~-~af~qqf~~g~fyaylklKEqEIRNi~WIaecI~q 233 (247)
+++.+.+.+++ |++.+.++ .+++...+|.+++.+..+.++ .+...||++||++||+.+||+||+||.||++|+.-
T Consensus 253 ~~~~~~l~~t~-y~~~l~~~~~~~~~~~~~~E~~~d~~~~~~~~~~~~~~~~~~~~~~~yl~~ke~Ei~nlr~I~~gk~~ 331 (343)
T TIGR02923 253 DEVVSALDGTK-YGEDISEVLSEEEKSVAVFERALDEYLIKMATKLSLRYPLSVGPVLGYILKKEREVRNLRAIARGKEE 331 (343)
T ss_pred HHHHHHHhcCc-chHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999988 99999753 245557999999999999995 59999999999999999999999999999999987
Q ss_pred cc
Q 025862 234 NQ 235 (247)
Q Consensus 234 ~~ 235 (247)
+-
T Consensus 332 ~l 333 (343)
T TIGR02923 332 GL 333 (343)
T ss_pred CC
Confidence 64
No 5
>PRK01198 V-type ATP synthase subunit C; Provisional
Probab=99.97 E-value=7.6e-31 Score=240.81 Aligned_cols=229 Identities=20% Similarity=0.295 Sum_probs=209.8
Q ss_pred CchhHHHHHHhhhcCCChHHHHhhhcCCCCcc--cchhhhhcCCHHHHHHHHHhcCCCchhhhhccCcccccc-ccHHHH
Q 025862 1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFD--SIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDD-MNIEIM 77 (247)
Q Consensus 1 MIdNv~lLi~g~~~~r~~~ell~~chPLG~F~--~l~~l~va~~~~eLy~~vLvdTPla~yf~~~l~~~dlde-~nieii 77 (247)
+|+||+.+++|+.+|++.+++.+.++|.|.|+ .+..+..++|++|+.+. |.+|||++++.++... +.+ .++..+
T Consensus 104 di~NIk~ilr~~~~g~~~~~i~~~l~~~g~l~~~~l~~l~~~~~~~e~~~~-L~~T~Y~~~l~~~~~~--~~~~~~~~~~ 180 (352)
T PRK01198 104 DIHNIKTLLRGKILGLDAEEIEELLIPAGELDLEKLKELLEAKSVEEIVKI-LEGTEYYEVLEEALED--YEETGDLQPI 180 (352)
T ss_pred hHHHHHHHHHHHHhCCChHHhhhheeeCCcCCHHHHHHHHhCCCHHHHHHH-hcCCchHHHHHHHHHH--HhccCCHHHH
Confidence 48999999999999999999999999999998 89999999999999995 5999999999998865 544 499999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhHHHHHHHHHHHHhcCCCCCHHhhhccccCCCCCChhhHHhhccCCCh
Q 025862 78 RNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDI 157 (247)
Q Consensus 78 rn~L~K~yLEdfy~fc~~lg~~t~evM~~iL~fEADrr~I~ItlNs~~~~L~~~~r~~l~p~~G~L~p~~~~~La~a~d~ 157 (247)
+..|+++|++++++.+ +.++.+.+.+.+++..+.|..+|+++++++..+++++...++++..|++.++.++.|+ ++|+
T Consensus 181 E~~Ld~~~~~~l~~~~-~~~~~~~~~l~~~~~~~iD~~Ni~~ilr~k~~~~~~e~i~~~li~~g~i~~~~l~~l~-~~~~ 258 (352)
T PRK01198 181 ENALDKYYYENLLEIA-SPKDIDEKLLLEYVRTEIDITNIKTLLRLKAQGLSADFIEKVLIPGGSLDEEKLKELL-AEDI 258 (352)
T ss_pred HHHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHccCCCCcCHHHHHHHh-cCCH
Confidence 9999999999999999 5566678899999999999999999999999899999999999999999999999999 9999
Q ss_pred HHHHHHhhcCcccHHhhhhc-----CCCCCCcHHHHHHHHHHHHHH-HHhhhhcchHHHHHHHHHHHHHhhhHHHHHHHh
Q 025862 158 DQVRGVMEKYPPYQSIFSKL-----SYGESQMLDKAFYEEEVKRLC-LAFEQQFHYGVFFAYMRLREQEIRNLMWISECV 231 (247)
Q Consensus 158 e~v~~~l~~~~~Y~~i~~~~-----~~~~~~~lEd~f~~~ev~~~~-~af~qqf~~g~fyaylklKEqEIRNi~WIaecI 231 (247)
+++.+.|++++ |+..+.++ .+++...+|.+++....+.+. .+...+|+++++++|+.+||+|++||.||++|+
T Consensus 259 ~~~~~~L~~t~-y~~~l~~~~~~~~~~~~~~~~E~~~d~~~~~~~~~~~~~~~~~~~~~l~yl~~~e~Ei~NL~~I~~gk 337 (352)
T PRK01198 259 EELVSALEGTK-YGDVLSEALEEYEETGSLSVFEKALDNYLLEYMKKLSKRYPFSVEPILGYILAKEREVKNLRIIARGK 337 (352)
T ss_pred HHHHHHHhcCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCcCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997 99988654 234556999999999999996 678899999999999999999999999999999
Q ss_pred hhcc
Q 025862 232 AQNQ 235 (247)
Q Consensus 232 ~q~~ 235 (247)
.++.
T Consensus 338 ~~~~ 341 (352)
T PRK01198 338 ENGL 341 (352)
T ss_pred HcCC
Confidence 8875
No 6
>TIGR02923 AhaC ATP synthase A1, C subunit. The A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The C subunit is part of the hydrophilic A1 "stalk" complex (AhaABCDEFG) which is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex.
Probab=99.55 E-value=3e-13 Score=124.20 Aligned_cols=204 Identities=15% Similarity=0.174 Sum_probs=152.6
Q ss_pred cchhhhhcCCHHHHHHHHHhcCCCchhhhhccCccccccccHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhHH
Q 025862 33 SIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEA 112 (247)
Q Consensus 33 ~l~~l~va~~~~eLy~~vLvdTPla~yf~~~l~~~dlde~nieiirn~L~K~yLEdfy~fc~~lg~~t~evM~~iL~fEA 112 (247)
++..|..++|++|+.+.+ -+|+|++++.+.... ..+...++..|++.+...|.+......|...+++..++. +.
T Consensus 24 ~~~~L~~~~s~~e~~~~L-~~t~Y~~~l~~~~~~----~~~~~~iE~~L~~~l~~~~~~l~~~~~~~~~~~~~~~~~-~~ 97 (343)
T TIGR02923 24 DFNELLEMRGTDEIVRFL-EETDYKKELDELGSK----SYGVDLIEHALDANLAKTYEKLFRISPGASRDLIRLYLK-KW 97 (343)
T ss_pred HHHHHHhCCCHHHHHHHh-cCCChHHHHHHhhhc----cCCHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHH-HH
Confidence 577888899999999977 889999998775421 235666788888885555444434445655677877666 89
Q ss_pred HHHHHHHHHHhcCCCCCHHhhhccccCCCCCChhhHHhhccCCChHHHHHHhhcCcccHHhhhhc--CCCCCCcHHHHHH
Q 025862 113 DRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKL--SYGESQMLDKAFY 190 (247)
Q Consensus 113 Drr~I~ItlNs~~~~L~~~~r~~l~p~~G~L~p~~~~~La~a~d~e~v~~~l~~~~~Y~~i~~~~--~~~~~~~lEd~f~ 190 (247)
|..+|+..++++-.+.++++..+++...|.+.++.++.|++++|++++..+|.+++ |++.+... .+++...+|.+++
T Consensus 98 di~Nik~ilR~~~~g~~~~~i~~~l~~~g~~~~~~l~~l~~~~~~~e~~~~L~~t~-y~~~l~~~~~~~~~l~~~E~~Ld 176 (343)
T TIGR02923 98 DVWNIKTLIRAKYANASAEEVEDLLIPAGEFLEKRIKELAEAKTIEEIVEALEGTP-YYGPLQEALAGNGDLSPIENELD 176 (343)
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHhccccccCHHHHHHHHcCCCHHHHHHHcCCCc-cHHHHHHHHhcCCCHHHHHHHHH
Confidence 99999999999987888888777666679999999999999999999999999999 88888554 3444446666666
Q ss_pred HHHHHHH-HHHhhhhcchHHHHHHHHHHHHHhhhHHHHHHHhhhcc-cccccccc
Q 025862 191 EEEVKRL-CLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQ-KSRVHDSV 243 (247)
Q Consensus 191 ~~ev~~~-~~af~qqf~~g~fyaylklKEqEIRNi~WIaecI~q~~-~~~i~~~i 243 (247)
..=.+.. +.+=.-.+.-+++.+++-.+|.|++||.||.+|+.++. ++.|.+++
T Consensus 177 ~~y~~~l~~~~~~~~~~~~~~l~~~~~~eiD~~Nl~~ilr~k~~~~~~e~i~~~l 231 (343)
T TIGR02923 177 RMYYEKLLKYVGSPSDDETKLFTEFIKTEVDIRNLKTLLRLKAAGLSPDEIMPYT 231 (343)
T ss_pred HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhc
Confidence 5333322 22211224456789999999999999999999999864 35665553
No 7
>PRK01198 V-type ATP synthase subunit C; Provisional
Probab=99.41 E-value=1.5e-11 Score=113.23 Aligned_cols=201 Identities=15% Similarity=0.204 Sum_probs=150.3
Q ss_pred cchhhhhcCCHHHHHHHHHhcCCCchhhhhccCccccccccHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhHH
Q 025862 33 SIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEA 112 (247)
Q Consensus 33 ~l~~l~va~~~~eLy~~vLvdTPla~yf~~~l~~~dlde~nieiirn~L~K~yLEdfy~fc~~lg~~t~evM~~iL~fEA 112 (247)
++..|..++|++|+.+.+ -+|+|++++.+.-+. .+ +...++..|.+.+...|.......+|.-.+++ +.+....
T Consensus 30 ~~~~L~~~~s~~e~~~~L-~~t~Y~~~l~~~~~~--~~--~~~~~E~~L~~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~ 103 (352)
T PRK01198 30 KYERLLEMKSLEEIIRFL-EETEYKEEIDELGSR--YS--GPDLIEKALNRNLAKTYELLLEISPGRLKELV-DVYLRKW 103 (352)
T ss_pred HHHHHHhCCCHHHHHHHH-hcCCcHHHHHHhccc--cc--chhHHHHHHHHHHHHHHHHHHHHCcchHHHHH-HHHHHHH
Confidence 577788899999999998 699999999763322 11 33447788888866666655554555434444 4445669
Q ss_pred HHHHHHHHHHhcCCCCCHHhhhccccCCCCCChhhHHhhccCCChHHHHHHhhcCcccHHhhhhc-----CCCCCCcHHH
Q 025862 113 DRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKL-----SYGESQMLDK 187 (247)
Q Consensus 113 Drr~I~ItlNs~~~~L~~~~r~~l~p~~G~L~p~~~~~La~a~d~e~v~~~l~~~~~Y~~i~~~~-----~~~~~~~lEd 187 (247)
|..+|+.+++++-.+.++++-..++...|.+.++..+.|++++|++++...|.+++ |++.+... .+++...+|.
T Consensus 104 di~NIk~ilr~~~~g~~~~~i~~~l~~~g~l~~~~l~~l~~~~~~~e~~~~L~~T~-Y~~~l~~~~~~~~~~~~~~~~E~ 182 (352)
T PRK01198 104 DIHNIKTLLRGKILGLDAEEIEELLIPAGELDLEKLKELLEAKSVEEIVKILEGTE-YYEVLEEALEDYEETGDLQPIEN 182 (352)
T ss_pred hHHHHHHHHHHHHhCCChHHhhhheeeCCcCCHHHHHHHHhCCCHHHHHHHhcCCc-hHHHHHHHHHHHhccCCHHHHHH
Confidence 99999999999977777776565555579999999999999999999999999988 98887544 2334357777
Q ss_pred HHHHHHHHHH-HHHhhhhcchHHHHHHHHHHHHHhhhHHHHHHHhhhcc-cccccc
Q 025862 188 AFYEEEVKRL-CLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQ-KSRVHD 241 (247)
Q Consensus 188 ~f~~~ev~~~-~~af~qqf~~g~fyaylklKEqEIRNi~WIaecI~q~~-~~~i~~ 241 (247)
+++..-.+.. +.+-.....-.++..|+. ++.|++||+||-+|+.++. ++.|.+
T Consensus 183 ~Ld~~~~~~l~~~~~~~~~~~~~l~~~~~-~~iD~~Ni~~ilr~k~~~~~~e~i~~ 237 (352)
T PRK01198 183 ALDKYYYENLLEIASPKDIDEKLLLEYVR-TEIDITNIKTLLRLKAQGLSADFIEK 237 (352)
T ss_pred HHHHHHHHHHHHHhccCCcchHHHHHHHH-HHhhHHHHHHHHHHHHcCCCHHHHHH
Confidence 7776663333 444223577789999999 9999999999999999865 445543
No 8
>PF01992 vATP-synt_AC39: ATP synthase (C/AC39) subunit; InterPro: IPR002843 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit C from the A0 complex of A-ATPases, and subunits C and D from the V0 complex of V-ATPases, all of which are involved in the translocation of protons across a membrane. There is more than one type of D subunit in V-ATPases, where the D1 subunit is ubiquitous, while the D2 subunit has limited tissue expressivity, possibly to account for differential functions, targeting or regulation of V-ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 1R5Z_A 1V9M_A 3J0J_M.
Probab=98.57 E-value=1.5e-07 Score=86.03 Aligned_cols=200 Identities=15% Similarity=0.226 Sum_probs=120.3
Q ss_pred cchhhhhcCCHHHHHHHHHhcCCCchhhhhccCccccccccHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhHH
Q 025862 33 SIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEA 112 (247)
Q Consensus 33 ~l~~l~va~~~~eLy~~vLvdTPla~yf~~~l~~~dlde~nieiirn~L~K~yLEdfy~fc~~lg~~t~evM~~iL~fEA 112 (247)
+..+|..+++++|+ ...|-+|.|++++.+.- . . .+..-++..|.+.+.+.|.+.....+|+...++.- +-..-
T Consensus 18 ~~~~L~~~~~~~~~-~~~l~~t~Y~~~l~~~~-~---~-~~~~~iE~~L~~~l~~~~~~l~~~~~~~~~~~~~~-~~~r~ 90 (337)
T PF01992_consen 18 DYEELLEAESVEEA-VSLLEDTGYGDYLEEVS-S---E-IHRRDIEQALRRELFKEFQKLLRFAPGEAKEFLDA-YLMRY 90 (337)
T ss_dssp HHHHHTTS-HHHHH-HHHHTS-GGGGG--SSS-H---H-----HHHHHHHHHHHHHTTTGGGG--HHHHHHHHH-HHHHH
T ss_pred HHHHHHcCCCHHHH-HHHHhcccHHHHHHhcc-c---c-ccHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHH-HHHHH
Confidence 57788889999887 55669999999885432 1 1 46677789999999999888888888876677764 45667
Q ss_pred HHHHHHHHHHhcCCCCCHHhhhccccCCCCCChhhHHhhccCCChHHHHHHhhcCcccHHhhhhcC--CC--CC----Cc
Q 025862 113 DRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKLS--YG--ES----QM 184 (247)
Q Consensus 113 Drr~I~ItlNs~~~~L~~~~r~~l~p~~G~L~p~~~~~La~a~d~e~v~~~l~~~~~Y~~i~~~~~--~~--~~----~~ 184 (247)
|..+|+..+.++-++-+.++........| ..+..+..|+++.|++++..+|++++ |.+.+.... .+ +. .+
T Consensus 91 ei~nik~ilr~~~~g~~~~~~~~~l~~~g-~~~~~l~~l~~~~~~~e~~~~L~~t~-y~~~l~~~~~~~~~~~~~~~~~~ 168 (337)
T PF01992_consen 91 EIHNIKTILRAKLSGRDLEEILELLIPLG-FSFEDLKELLSAKDVEELIEALKGTP-YYEVLRQALEDYEQQDFFYIEEA 168 (337)
T ss_dssp HHHHHHHHHHHHHHT--GGGS---S-SS--HHHHHHHHSSSHHHHHHHH-HTTT-T-HHHHHHHHHHH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHhccccC-CChhhHHHHhccCCHHHHHHHhcCcc-hHHHHHHHHHhhcccchHHHHHH
Confidence 99999999999855545554444333477 66777999999999999999999998 888884431 11 10 13
Q ss_pred HHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHhhhHHHHHHHhhhc-cccccccccc
Q 025862 185 LDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQN-QKSRVHDSVV 244 (247)
Q Consensus 185 lEd~f~~~ev~~~~~af~qqf~~g~fyaylklKEqEIRNi~WIaecI~q~-~~~~i~~~i~ 244 (247)
+++..|..-.+.+. ..+--.-..+=.|++ -+-.+.||.|+.+++.++ .++.|..++|
T Consensus 169 l~~~yy~~~~~~~~--~~~~~~~~~l~~~~~-~~iD~~Ni~~~~R~k~~~~~~~~i~~ll~ 226 (337)
T PF01992_consen 169 LDDRYYEDLLKAAK--KLSGSEREILRELLG-MEIDLTNIKTILRAKKYGLSPEEIKQLLP 226 (337)
T ss_dssp HHHHHHHHHHHHHH-----TSS-HHHHHHHH-HHHHHHHHHHHHHTTTS---GGGT-----
T ss_pred HHHHHHHHHHHHhh--ccccchHHHHHHHHH-HHHHHHHHHHHHHHhhcCCCHhhhhccCC
Confidence 44444444444333 111122233334554 678999999999998765 4556665554
No 9
>COG1527 NtpC Archaeal/vacuolar-type H+-ATPase subunit C [Energy production and conversion]
Probab=98.06 E-value=4.7e-05 Score=72.21 Aligned_cols=133 Identities=18% Similarity=0.227 Sum_probs=116.1
Q ss_pred hhHHHHHHhhhcCCChHHHHhhhcCCCCcc--cchhhhhcCCHHHHHHHHHhcCCCchhhhhccCccccccc-cHHHHHH
Q 025862 3 DNVVLIVTGTLHERDVQELLEKCHPLGMFD--SIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDM-NIEIMRN 79 (247)
Q Consensus 3 dNv~lLi~g~~~~r~~~ell~~chPLG~F~--~l~~l~va~~~~eLy~~vLvdTPla~yf~~~l~~~dlde~-nieiirn 79 (247)
.|+..+++|+..+.+.+.......|-|.++ .+..|.-++|+.++.+.+ .+|+|++.+...... +++. .+..-..
T Consensus 209 ~Ni~~~lr~k~~~~~~e~~~~li~~gg~l~~~~~~~l~~~ed~~~~~~~l-~~t~yg~~l~~~~~~--~~~~~~~~~~e~ 285 (346)
T COG1527 209 RNIKTALRGKASELSEELMESLIPDGGSLDASALRDLAEAEDILDVLEAL-EGTSYGDALSEYREE--YEEGGSIAVFEE 285 (346)
T ss_pred HHHHHHHHHhhcCCcHHHHHHhcCCCccCCHHHHHHHHhcccHHHHHHHc-ccCchHHHHHHHHHH--hhcCCchhHHHH
Confidence 599999999999999888888999999999 799999999999999999 999999999988876 7777 5566666
Q ss_pred HHHHHHHHHHHHHHHh-cCCchHHHHHHHHhhHHHHHHHHHHHHhcCCCCCHHhhhccccC
Q 025862 80 TLYKAYLEDFYKFCQK-LGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSN 139 (247)
Q Consensus 80 ~L~K~yLEdfy~fc~~-lg~~t~evM~~iL~fEADrr~I~ItlNs~~~~L~~~~r~~l~p~ 139 (247)
.|.|++++..-+|.+. +=|. .-|+.-++.-|.-++++..+.+++..++++|.+.++++.
T Consensus 286 ~l~~~~~~~~~~~a~~~p~s~-~~v~~yl~~KE~EV~NLr~Ia~~k~~~~~~e~i~~~~~~ 345 (346)
T COG1527 286 ALRKALLKRAKEFAQYYPLSV-GPVLAYLLRKEIEVKNLRWIAEGKANGLPREEIKELLVP 345 (346)
T ss_pred HHHHHHHHHHHHHhhcCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcc
Confidence 6999999999999875 3332 458999999999999999999999999999988887753
No 10
>PF10962 DUF2764: Protein of unknown function (DUF2764); InterPro: IPR024492 This bacterial family of proteins has no known function.
Probab=95.13 E-value=0.14 Score=47.43 Aligned_cols=162 Identities=15% Similarity=0.267 Sum_probs=96.5
Q ss_pred cCCCCcccchhhhhcCCHHHHHHHHHh----cCCCchhhhhccCcccc--ccc-cHHHHHHHHHHHHHHHHHHHHHhcCC
Q 025862 26 HPLGMFDSIATLAVAQNMRELYRLVLV----DTPLAPYFSECITSEDL--DDM-NIEIMRNTLYKAYLEDFYKFCQKLGG 98 (247)
Q Consensus 26 hPLG~F~~l~~l~va~~~~eLy~~vLv----dTPla~yf~~~l~~~dl--de~-nieiirn~L~K~yLEdfy~fc~~lg~ 98 (247)
+|.|.|+. ..++++..++-. +.-+..||.+++.+ + .+. +--...+.|.. .||+++++-+.
T Consensus 68 ~~~g~~~~-------~el~~~~~~~~~~~~~~~~lP~y~~~Fl~~--y~~~~~e~~~~~e~~L~~----~yy~~~~~~~n 134 (271)
T PF10962_consen 68 DPRGNYSE-------EELEELIKAQKEGDEPDKGLPSYLKDFLED--YLNEEAEERIRHEDRLVA----AYYAYAMKSSN 134 (271)
T ss_pred CcccCcCH-------HHHHHHHHHHHhcccccccccHHHHHHHHH--HcccchhhccchHHHHHH----HHHHHHHHccC
Confidence 57777661 233444444432 55788899888865 4 111 22234466654 56777777544
Q ss_pred chHHHHHHHHhhHHHHHHHHHHHHhcCCCCCHHhhhccccCCCCCChhhHHhhccC--CChHHHHHHhhcCcccHHhhhh
Q 025862 99 ATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVC--EDIDQVRGVMEKYPPYQSIFSK 176 (247)
Q Consensus 99 ~t~evM~~iL~fEADrr~I~ItlNs~~~~L~~~~r~~l~p~~G~L~p~~~~~La~a--~d~e~v~~~l~~~~~Y~~i~~~ 176 (247)
..++++..|+-|-|+|-..+|+-.-+.++.. .. .| .|+....|++. .|++ +.. .+|-..++...
T Consensus 135 ---~Fl~~~~~F~~~lRnilaAlr~R~~g~d~~~---~l--~g--~~~v~~~Lr~s~a~dFg-L~~---~~p~l~~~~~~ 200 (271)
T PF10962_consen 135 ---PFLREWFEFNLELRNILAALRARKLGFDVSK---EL--VG--DGEVAEALRQSNAPDFG-LPE---EFPYLPELIRI 200 (271)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc---cc--cC--cHHHHHHHHhcCCCCCC-CCc---cchhHHHHHHH
Confidence 4999999999999999999999754433322 11 33 45556666632 2221 000 11211112211
Q ss_pred cCCCCCCcHHHHHHHHHHHHH-HHHhhhhcchHHHHHHH
Q 025862 177 LSYGESQMLDKAFYEEEVKRL-CLAFEQQFHYGVFFAYM 214 (247)
Q Consensus 177 ~~~~~~~~lEd~f~~~ev~~~-~~af~qqf~~g~fyayl 214 (247)
...++-.-.|..++...-+.. ..++...|++--+++|+
T Consensus 201 ~~~~~l~~~E~~Ld~~rW~~Le~~~~~~~Fd~e~V~aY~ 239 (271)
T PF10962_consen 201 YEEEPLVERERLLDLLRWNWLEELSFGHYFDFEAVFAYL 239 (271)
T ss_pred HccCCHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHH
Confidence 111121234888888888888 89999999999999986
No 11
>COG0315 MoaC Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=51.45 E-value=6.8 Score=33.70 Aligned_cols=22 Identities=32% Similarity=0.794 Sum_probs=17.4
Q ss_pred HHhhhcCCChHHHHhhhcCCCC
Q 025862 9 VTGTLHERDVQELLEKCHPLGM 30 (247)
Q Consensus 9 i~g~~~~r~~~ell~~chPLG~ 30 (247)
|.|..+=..+.||++.||||..
T Consensus 60 iAgimaaKkT~elIPlCHpi~l 81 (157)
T COG0315 60 IAGIMAAKRTSELIPLCHPLPL 81 (157)
T ss_pred HHHHHHhhhhhhhCccCCCCcc
Confidence 5566777778899999998753
No 12
>cd00528 MoaC MoaC family. Members of this family are involved in molybdenum cofactor (Moco) biosynthesis, an essential cofactor of a diverse group of redox enzymes. MoaC, a small hexameric protein, converts, together with MoaA, a guanosine derivative to the precursor Z by inserting the carbon-8 of the purine between the 2' and 3' ribose carbon atoms, which is the first of three phases of Moco biosynthesis.
Probab=41.57 E-value=8.1 Score=32.49 Aligned_cols=22 Identities=32% Similarity=0.794 Sum_probs=17.3
Q ss_pred HHhhhcCCChHHHHhhhcCCCC
Q 025862 9 VTGTLHERDVQELLEKCHPLGM 30 (247)
Q Consensus 9 i~g~~~~r~~~ell~~chPLG~ 30 (247)
|.|...-.-..+|++.||||..
T Consensus 46 iAgI~aaK~T~~LIPlCHpl~l 67 (136)
T cd00528 46 IAGIMAAKRTSELIPLCHPLPL 67 (136)
T ss_pred HHHHHHHHhcccccccCCCCcc
Confidence 4566666778899999999864
No 13
>cd01420 MoaC_PE MoaC family, prokaryotic and eukaryotic. Members of this family are involved in molybdenum cofactor (Moco) biosynthesis, an essential cofactor of a diverse group of redox enzymes. MoaC, a small hexameric protein, converts, together with MoaA, a guanosine derivative to the precursor Z by inserting the carbon-8 of the purine between the 2' and 3' ribose carbon atoms, which is the first of three phases of Moco biosynthesis.
Probab=40.83 E-value=9.2 Score=32.31 Aligned_cols=22 Identities=32% Similarity=0.794 Sum_probs=17.2
Q ss_pred HHhhhcCCChHHHHhhhcCCCC
Q 025862 9 VTGTLHERDVQELLEKCHPLGM 30 (247)
Q Consensus 9 i~g~~~~r~~~ell~~chPLG~ 30 (247)
|.|...-.-..+|++.||||..
T Consensus 46 iAgI~aaK~T~~LIPlCHpi~l 67 (140)
T cd01420 46 IAGIMAAKRTSELIPLCHPLPL 67 (140)
T ss_pred HHHHHHHHhhhcccccCCCCcc
Confidence 4566666778899999999864
No 14
>KOG2957 consensus Vacuolar H+-ATPase V0 sector, subunit d [Energy production and conversion]
Probab=40.68 E-value=3.4e+02 Score=26.15 Aligned_cols=161 Identities=12% Similarity=0.226 Sum_probs=102.6
Q ss_pred hhhhcCCHHHHHHHHHhcCCCchhhhhccCccccccccHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH-hhHHHH
Q 025862 36 TLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLL-AFEADR 114 (247)
Q Consensus 36 ~l~va~~~~eLy~~vLvdTPla~yf~~~l~~~dlde~nieiirn~L~K~yLEdfy~fc~~lg~~t~evM~~iL-~fEADr 114 (247)
.|+-+.|.+||-=.+ -.|-+|.|+...-|. +.+.+|...|..-.+.+|..+=..-.++.+..|.=|- ++..|-
T Consensus 35 nL~QCE~LEDlki~L-s~Tdyg~fl~n~~s~-----lt~s~I~~~l~ekL~~ef~h~R~~a~epl~tfldyity~ymIdN 108 (350)
T KOG2957|consen 35 NLVQCENLEDLKIHL-SSTDYGNFLANEPSP-----LTVSVIDEKLREKLVDEFDHIRDQADEPLSTFLDYITYGYMIDN 108 (350)
T ss_pred HHHhhccHHHHHHhh-cccccccccccCCCC-----CcHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhH
Confidence 455566888876555 899999998765544 7788888888888888888764443343444443332 234443
Q ss_pred HHHHHHHHhcCCCCCHHhhhccccCCCCC-ChhhHHhhccCCC-hHHHHHHhhcCcccHHhhhhcCCCCCCcHHHHHHHH
Q 025862 115 RAVNITINSIGTELTRDDRRKLYSNFGLL-YPYGHEELAVCED-IDQVRGVMEKYPPYQSIFSKLSYGESQMLDKAFYEE 192 (247)
Q Consensus 115 r~I~ItlNs~~~~L~~~~r~~l~p~~G~L-~p~~~~~La~a~d-~e~v~~~l~~~~~Y~~i~~~~~~~~~~~lEd~f~~~ 192 (247)
-++ .+. | .|...+...+++.|--| .=+.+..+.=|.+ .|-+.++|-.+| .++.|.++- + ++-|++.
T Consensus 109 v~l--Lit--g-tl~~r~~~ell~kChpLG~F~~l~ai~vA~n~~ely~~vlvdTp-la~~F~dc~-----~-~~dld~m 176 (350)
T KOG2957|consen 109 VIL--LIT--G-TLHDRDVGELLEKCHPLGSFDQLEAIKVASNPAELYNAVLVDTP-LAPYFEDCL-----S-EEDLDEM 176 (350)
T ss_pred HHH--HHh--c-cccCCCHHHHHHhcCCcCchhhhhhhhhcCCHHHHHHHHHhcCc-chHHHHhhc-----C-Hhhhhhh
Confidence 332 222 2 25566677777776544 2355778888888 666777888888 888887653 2 3445665
Q ss_pred HHHHHHHHhhhhcchHHHHHHHH
Q 025862 193 EVKRLCLAFEQQFHYGVFFAYMR 215 (247)
Q Consensus 193 ev~~~~~af~qqf~~g~fyaylk 215 (247)
-++.-+..+- -++.--||.|+|
T Consensus 177 niEIiRn~lY-KaylE~fY~fc~ 198 (350)
T KOG2957|consen 177 NIEIIRNTLY-KAYLEDFYNFCK 198 (350)
T ss_pred hHHHHHHHHH-HHHHHHHHHHHH
Confidence 5555544443 256778899984
No 15
>TIGR00581 moaC molybdenum cofactor biosynthesis protein MoaC. MoaC catalyzes an early step in molybdenum cofactor biosynthesis in E. coli. The Arabidopsis homolog Cnx3 complements MoaC deficiency in E. coli (MUID:95197640). Eukarotic members of this family branch within the bacterial branch, with the archaeal members as an apparent outgroup. This protein is absent in a number of the pathogens with smaller genomes, including Mycoplasmas, Chlamydias, and spirochetes, but is found in most other complete genomes to date. The homolog form Synechocystis sp. is fused to a MobA-homologous region and is an outlier to all other bacterial forms by both neighbor-joining and UPGMA analyses. Members of this family are well-conserved. The seed for this model excludes both archaeal sequences and the most divergent bacterial sequences, but still finds all candidate MoaC sequences easily between trusted and noise cutoffs. We suggest that sequences branching outside the set that contains all seed members
Probab=38.66 E-value=12 Score=31.89 Aligned_cols=24 Identities=25% Similarity=0.667 Sum_probs=18.5
Q ss_pred HHhhhcCCChHHHHhhhcCCCCcc
Q 025862 9 VTGTLHERDVQELLEKCHPLGMFD 32 (247)
Q Consensus 9 i~g~~~~r~~~ell~~chPLG~F~ 32 (247)
|.|...-.-..||++.||||..-.
T Consensus 57 iAgi~aaK~T~~lIPlCHpi~l~~ 80 (147)
T TIGR00581 57 IAGIMAAKRTGDLIPLCHPLPLSK 80 (147)
T ss_pred HHHHHHHHhhhhhcCCCCCccceE
Confidence 456666677889999999987644
No 16
>PRK12343 putative molybdenum cofactor biosynthesis protein MoaC; Reviewed
Probab=38.04 E-value=12 Score=32.05 Aligned_cols=22 Identities=36% Similarity=0.782 Sum_probs=17.3
Q ss_pred HHhhhcCCChHHHHhhhcCCCC
Q 025862 9 VTGTLHERDVQELLEKCHPLGM 30 (247)
Q Consensus 9 i~g~~~~r~~~ell~~chPLG~ 30 (247)
|.|...-+-..+|++.||||..
T Consensus 54 iAgi~aAK~T~~LIPlCHPl~l 75 (151)
T PRK12343 54 VAGILAVKKTPELIPMCHPIPI 75 (151)
T ss_pred HHHHHHHHhhhhhccCCCCccc
Confidence 4566666778899999999864
No 17
>cd01419 MoaC_A MoaC family, archaeal. Members of this family are involved in molybdenum cofactor (Moco) biosynthesis, an essential cofactor of a diverse group of redox enzymes. MoaC, a small hexameric protein, converts, together with MoaA, a guanosine derivative to the precursor Z by inserting the carbon-8 of the purine between the 2' and 3' ribose carbon atoms, which is the first of three phases of Moco biosynthesis.
Probab=37.76 E-value=11 Score=31.90 Aligned_cols=22 Identities=32% Similarity=0.777 Sum_probs=16.5
Q ss_pred HHhhhcCCChHHHHhhhcCCCC
Q 025862 9 VTGTLHERDVQELLEKCHPLGM 30 (247)
Q Consensus 9 i~g~~~~r~~~ell~~chPLG~ 30 (247)
|.|...-.-..||++.||||..
T Consensus 46 iAgI~aaK~T~~LIPlCHpl~l 67 (141)
T cd01419 46 IAGILAVKKTPELIPMCHPIPI 67 (141)
T ss_pred HHHHHHHHhhhhhccCCCCccc
Confidence 4455555677899999999864
No 18
>PRK09364 moaC molybdenum cofactor biosynthesis protein MoaC; Provisional
Probab=34.24 E-value=16 Score=31.57 Aligned_cols=22 Identities=27% Similarity=0.751 Sum_probs=17.5
Q ss_pred HHhhhcCCChHHHHhhhcCCCC
Q 025862 9 VTGTLHERDVQELLEKCHPLGM 30 (247)
Q Consensus 9 i~g~~~~r~~~ell~~chPLG~ 30 (247)
|.|...-.-..+|++.|||+..
T Consensus 60 iAgi~aaK~T~~LIPlCHpi~i 81 (159)
T PRK09364 60 IAGIMAAKRTSDLIPLCHPLML 81 (159)
T ss_pred HHHHHHHHhhhhhcccCCCCcc
Confidence 4566667778899999999764
No 19
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.10 E-value=16 Score=38.81 Aligned_cols=48 Identities=27% Similarity=0.540 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCCchhhhhcc----C---ccccccccHHHHHHHHH-HHHHHHHHHH
Q 025862 45 ELYRLVLVDTPLAPYFSECI----T---SEDLDDMNIEIMRNTLY-KAYLEDFYKF 92 (247)
Q Consensus 45 eLy~~vLvdTPla~yf~~~l----~---~~dlde~nieiirn~L~-K~yLEdfy~f 92 (247)
-+|.++++|-|+|++|-..+ + -++|..++-|.-||.-+ |-|=-|.-+.
T Consensus 816 AvYEGIvvDv~fa~vflsqlLG~~~~s~~DELs~LDpElYrnLtfvKhYdgd~~dL 871 (1096)
T KOG4427|consen 816 AVYEGIVVDVPFASVFLSQLLGRHSLSFIDELSSLDPELYRNLTFVKHYDGDLKDL 871 (1096)
T ss_pred HHhcceEEecccHHHHHHHHhcccchhhhhhccccCHHHHhhhhHHHhhcccHhhh
Confidence 47889999999999997433 1 11266669999998643 5554444433
No 20
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=32.08 E-value=34 Score=23.83 Aligned_cols=31 Identities=26% Similarity=0.336 Sum_probs=26.9
Q ss_pred HHHHHhhHHHHHHHHHHHHhcCCCCCHHhhh
Q 025862 104 MSDLLAFEADRRAVNITINSIGTELTRDDRR 134 (247)
Q Consensus 104 M~~iL~fEADrr~I~ItlNs~~~~L~~~~r~ 134 (247)
|.++|.+.-||.++.|.++-...+.+|+.-.
T Consensus 11 iS~lLntgLd~etL~ici~L~e~GVnPeaLA 41 (48)
T PF12554_consen 11 ISDLLNTGLDRETLSICIELCENGVNPEALA 41 (48)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHCCCCHHHHH
Confidence 8889999999999999999888778887543
No 21
>PLN02375 molybderin biosynthesis protein CNX3
Probab=30.03 E-value=18 Score=33.53 Aligned_cols=22 Identities=18% Similarity=0.549 Sum_probs=18.0
Q ss_pred HHhhhcCCChHHHHhhhcCCCC
Q 025862 9 VTGTLHERDVQELLEKCHPLGM 30 (247)
Q Consensus 9 i~g~~~~r~~~ell~~chPLG~ 30 (247)
|.|...-.-+.+|++.||||..
T Consensus 172 IAGImAAKkTseLIPLCHPLpL 193 (270)
T PLN02375 172 IAGINGAKQTSSLIPLCHNIAL 193 (270)
T ss_pred HHHHHHhhccccccccCCCccc
Confidence 5666777788899999999875
No 22
>PF01967 MoaC: MoaC family; InterPro: IPR002820 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This entry contains the molybdenum cofactor biosynthesis protein MoaC.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 2EKN_B 1EKS_A 1EKR_A 3JQM_D 2IIH_A 3JQJ_I 2IDE_K 3JQK_A 2OHD_B 2EEY_A.
Probab=29.71 E-value=11 Score=31.57 Aligned_cols=22 Identities=27% Similarity=0.788 Sum_probs=11.5
Q ss_pred HHhhhcCCChHHHHhhhcCCCC
Q 025862 9 VTGTLHERDVQELLEKCHPLGM 30 (247)
Q Consensus 9 i~g~~~~r~~~ell~~chPLG~ 30 (247)
|.|...=+-..+|++.|||+..
T Consensus 46 iAgI~aaKkT~~LIPlCHpi~l 67 (136)
T PF01967_consen 46 IAGIMAAKKTSELIPLCHPIPL 67 (136)
T ss_dssp HHHHHHHHHHHHHSTT-----E
T ss_pred HHHHHHhhhhhhhccccccccc
Confidence 3445555567899999999864
No 23
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=27.37 E-value=54 Score=20.00 Aligned_cols=14 Identities=7% Similarity=0.389 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHH
Q 025862 207 YGVFFAYMRLREQE 220 (247)
Q Consensus 207 ~g~fyaylklKEqE 220 (247)
.-+.+||+|-|.||
T Consensus 13 LP~lISWIK~kr~~ 26 (26)
T PF01372_consen 13 LPTLISWIKNKRQQ 26 (26)
T ss_dssp HHHHHHHHHHHHH-
T ss_pred ChHHHHHHHHHhcC
Confidence 45688999999885
No 24
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=27.05 E-value=25 Score=33.46 Aligned_cols=22 Identities=27% Similarity=0.656 Sum_probs=17.7
Q ss_pred HHhhhcCCChHHHHhhhcCCCC
Q 025862 9 VTGTLHERDVQELLEKCHPLGM 30 (247)
Q Consensus 9 i~g~~~~r~~~ell~~chPLG~ 30 (247)
|.|...-+.+.||++.||||..
T Consensus 60 ~agi~a~k~t~~liplch~~~l 81 (346)
T PRK14500 60 IAGTMAVKRTADLIPFCHTLPI 81 (346)
T ss_pred HHHHHHHhhhhhhccccCcccc
Confidence 5666777788999999999753
No 25
>PHA03154 hypothetical protein; Provisional
Probab=26.09 E-value=43 Score=31.54 Aligned_cols=71 Identities=18% Similarity=0.387 Sum_probs=48.3
Q ss_pred HHHHHHHhcCCCchhhhhccCccccccccHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhHHHHHHH
Q 025862 45 ELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAV 117 (247)
Q Consensus 45 eLy~~vLvdTPla~yf~~~l~~~dlde~nieiirn~L~K~yLEdfy~fc~~lg~~t~evM~~iL~fEADrr~I 117 (247)
--||.|+.=|-.-+.|++|+-++-+.+ .|.-++ .|-|.=+..|+.+|.+.+|-.++-|+..+.|-||-.+|
T Consensus 207 ~ffNQvVfWTtvl~mYq~ciy~d~l~~-sI~~~~-~LLk~EvkaF~~W~~sq~~y~~~~m~k~i~~~~~~~~~ 277 (304)
T PHA03154 207 SSINQVVLWSTMFHFYSIAHCNDCINE-SIGFTE-ALLKQEVSAFYEWCLEQEDYEADRMAKFIKFSADQITI 277 (304)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHhhcCcCcccHHHHHHHHHHHHhhhee
Confidence 345555555655667778874432222 333333 34466678999999999999899999999999996433
No 26
>PF12209 SAC3: Leucine permease transcriptional regulator helical domain; InterPro: IPR024293 This domain is found in fungal proteins, including the nuclear mRNA export protein SAC3. It has been suggested this domain provides a scaffold within the yeast Sac3:Cdc31:Sus1:Thp1 (TREX-2) complex to integrate interactions between protein complexes to facilitate the coupling of transcription and mRNA export during gene expression [].; PDB: 3FWC_N 3FWB_B.
Probab=25.51 E-value=48 Score=25.19 Aligned_cols=50 Identities=14% Similarity=0.292 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCCCchhhhhccCcccccccc---HHHHHHHHHHHHHHHHHHHH
Q 025862 43 MRELYRLVLVDTPLAPYFSECITSEDLDDMN---IEIMRNTLYKAYLEDFYKFC 93 (247)
Q Consensus 43 ~~eLy~~vLvdTPla~yf~~~l~~~dlde~n---ieiirn~L~K~yLEdfy~fc 93 (247)
+.++.+.| |++.++.+..+++.++.-.... |+-+-.-||.|++-+-.-+|
T Consensus 6 ~~~ii~~v-V~~el~~~l~~~l~~~n~~~~R~~iI~sLs~ELy~AFi~E~~Y~~ 58 (79)
T PF12209_consen 6 YSQIIQDV-VHSELSKILKNLLRRQNARKERKQIIDSLSEELYDAFIHEQLYQI 58 (79)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777 9999999999998774433333 67777778877775544343
No 27
>PF08696 Dna2: DNA replication factor Dna2; InterPro: IPR014808 Dna2 is a DNA replication factor with single-stranded DNA-dependent ATPase, ATP-dependent nuclease, (5'-flap endonuclease) and helicase activities. It is required for Okazaki fragment processing and is involved in DNA repair pathways []. ; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication
Probab=25.50 E-value=1.2e+02 Score=26.77 Aligned_cols=58 Identities=24% Similarity=0.461 Sum_probs=38.0
Q ss_pred HHHHhcCCCchhhhhccCccccccccHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHh
Q 025862 48 RLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLA 109 (247)
Q Consensus 48 ~~vLvdTPla~yf~~~l~~~dlde~nieiirn~L~K~yLEdfy~fc~~lg~~t~evM~~iL~ 109 (247)
...|++|=+-..|++|+...+++...++-+=..+-+.|++++|. +|-+.++++.++..
T Consensus 89 ~~ml~GtIvHelfQ~~l~~~~~~~~~l~~~~~~~l~~~~~~ly~----~~~~~~~~~~~l~~ 146 (209)
T PF08696_consen 89 KPMLIGTIVHELFQKALRTNDFDLEFLEELADRILEKYLEELYA----LGETEDEAREELEE 146 (209)
T ss_pred hhheeeeeHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHH
Confidence 34457777777888888777777664443333333488899983 45556777777744
No 28
>PF12249 AftA_C: Arabinofuranosyltransferase A C terminal; InterPro: IPR020959 The arabinofuranosyltransferase enzyme AftA is involved in cell wall arabinan biosynthesis in bacteria []. It catalyses the addition of the first key arabinofuranosyl residue from the sugar donor beta-D-arabinofuranosyl-1-monophosphoryldecaprenol to the galactan domain of the cell wall, thus priming the galactan for further elaboration by the arabinofuranosyltransferases. As this enzyme is important for cell growth and is found in some important pathogens, such as Mycobacterium tuberculosis, it represents a potential target for the devlopment of new antibacterial drugs. This entry represents the C-terminal domain of AftA.; GO: 0016757 transferase activity, transferring glycosyl groups, 0044038 cell wall macromolecule biosynthetic process, 0005886 plasma membrane, 0016021 integral to membrane
Probab=25.18 E-value=42 Score=29.50 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=28.0
Q ss_pred hcCCCCcc----cchhhhhcCCHHHHHHHHHhcCCCch
Q 025862 25 CHPLGMFD----SIATLAVAQNMRELYRLVLVDTPLAP 58 (247)
Q Consensus 25 chPLG~F~----~l~~l~va~~~~eLy~~vLvdTPla~ 58 (247)
-.|||.|+ ++++=+.+++.+||..++ ..+|..+
T Consensus 79 ANPLaeF~~R~~~Ie~Ws~~~~p~el~~al-d~~pWr~ 115 (178)
T PF12249_consen 79 ANPLAEFDERNAEIESWSELTDPDELLAAL-DSSPWRA 115 (178)
T ss_pred cCchhhHHHHHHHHHHHhccCCHHHHHHHH-HhCCCCC
Confidence 47999999 577778899999999998 8888654
No 29
>KOG3908 consensus Queuine-tRNA ribosyltransferase [RNA processing and modification]
Probab=23.64 E-value=66 Score=30.87 Aligned_cols=32 Identities=19% Similarity=0.557 Sum_probs=25.5
Q ss_pred HHHHHHhhhHHHHHHHhhhccccccccccccc
Q 025862 215 RLREQEIRNLMWISECVAQNQKSRVHDSVVFI 246 (247)
Q Consensus 215 klKEqEIRNi~WIaecI~q~~~~~i~~~i~~~ 246 (247)
+.+|-=-|.|.|+-+||.-.+|+.=.+.+||+
T Consensus 163 rveeAM~RsIRWlDRCi~Ah~R~d~Q~lFpIi 194 (396)
T KOG3908|consen 163 RVEEAMYRSIRWLDRCIMAHNRDDEQNLFPII 194 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccchhhhhhh
Confidence 34566668999999999998888777777775
No 30
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=23.26 E-value=25 Score=33.19 Aligned_cols=22 Identities=32% Similarity=0.727 Sum_probs=17.2
Q ss_pred HHhhhcCCChHHHHhhhcCCCC
Q 025862 9 VTGTLHERDVQELLEKCHPLGM 30 (247)
Q Consensus 9 i~g~~~~r~~~ell~~chPLG~ 30 (247)
|.|...-+.+.||++.||||..
T Consensus 56 ~agi~aaK~t~~liPlchp~~l 77 (312)
T PRK03604 56 IAGIQAAKRTSELIPLCHPLPL 77 (312)
T ss_pred HHHHHHHHhcccccccCCCCCC
Confidence 4556666778899999999874
No 31
>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Syp1p is associated with septins, a family of GTP-binding proteins that serve as elements of septin filaments, which are required for cell morphogenesis and division. Syp1p regulates cell-cycle dependent septin cytoskeletal dynamics in yeast. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCH domain Only (FCHO) proteins and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=22.37 E-value=1.1e+02 Score=27.33 Aligned_cols=61 Identities=16% Similarity=0.419 Sum_probs=46.4
Q ss_pred chhhhhccCccccccccHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhHHHHHHHHHH
Q 025862 57 APYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120 (247)
Q Consensus 57 a~yf~~~l~~~dlde~nieiirn~L~K~yLEdfy~fc~~lg~~t~evM~~iL~fEADrr~I~It 120 (247)
+|++.+-+.+ +|+-.|..+|+.|-. |--..=..|.+.+-...++|..++.++.+.-+-...
T Consensus 159 ~~~~~e~fQ~--leeeRl~~lk~~l~~-y~~~~sd~~~~~~~~~E~~~~~l~~~~~e~dI~~F~ 219 (228)
T cd07650 159 APFLFELLQA--IDEERLNHLKDVLLQ-FQTHESDYALRTTESAEECMNQLLEFDTEDEIQRFA 219 (228)
T ss_pred hHHHHHHHHH--HHHHHHHHHHHHHHH-HHhHhhHHHHHhhHHHHHHHHHHhCCChHHHHHHHH
Confidence 6777676644 999999999999843 445555667887778899999999998887655443
No 32
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=20.65 E-value=61 Score=29.92 Aligned_cols=46 Identities=28% Similarity=0.556 Sum_probs=41.2
Q ss_pred HHHHHHhhhcCCChHHHHhhhcCCCCcccchhhhhcCCHHHHHHHHHhcC
Q 025862 5 VVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDT 54 (247)
Q Consensus 5 v~lLi~g~~~~r~~~ell~~chPLG~F~~l~~l~va~~~~eLy~~vLvdT 54 (247)
.+|||.+.+.....+|+++.+|-|| |..|....|-+||-+++=.+.
T Consensus 132 avLLI~~~L~~~~l~el~~~A~~LG----m~~LVEVh~~eEl~rAl~~ga 177 (254)
T COG0134 132 AVLLIVAALDDEQLEELVDRAHELG----MEVLVEVHNEEELERALKLGA 177 (254)
T ss_pred cHHHHHHhcCHHHHHHHHHHHHHcC----CeeEEEECCHHHHHHHHhCCC
Confidence 5799999999999999999999888 689999999999999995444
No 33
>PRK14499 molybdenum cofactor biosynthesis protein MoaC/MOSC-domain-containing protein; Provisional
Probab=20.45 E-value=37 Score=32.05 Aligned_cols=22 Identities=18% Similarity=0.513 Sum_probs=18.0
Q ss_pred HHhhhcCCChHHHHhhhcCCCC
Q 025862 9 VTGTLHERDVQELLEKCHPLGM 30 (247)
Q Consensus 9 i~g~~~~r~~~ell~~chPLG~ 30 (247)
|.|...-+-+.+|++.||||..
T Consensus 59 ~agi~aaK~t~~liPlchp~~i 80 (308)
T PRK14499 59 IAAIMAAKKTSELIPLCHNIFL 80 (308)
T ss_pred HHHHHHhhhcccccccCCCccc
Confidence 5567777788999999999865
Done!