Query 025862
Match_columns 247
No_of_seqs 104 out of 219
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 19:15:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025862.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025862hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v9m_A V-type ATP synthase sub 100.0 8.1E-45 2.8E-49 328.4 14.9 224 1-242 92-319 (323)
2 1v9m_A V-type ATP synthase sub 99.0 3.9E-09 1.3E-13 94.8 13.4 188 33-244 24-219 (323)
3 1ekr_A Molybdenum cofactor bio 42.0 5.7 0.00019 33.1 0.1 21 10-30 61-81 (161)
4 2ohd_A Probable molybdenum cof 37.3 5.7 0.00019 32.8 -0.6 17 14-30 56-72 (151)
5 2iih_A Molybdenum cofactor bio 36.3 6 0.00021 32.8 -0.6 20 11-30 60-79 (157)
6 2eey_A Molybdopterin biosynthe 36.2 6.1 0.00021 33.0 -0.6 21 10-30 61-81 (162)
7 1wwp_A Hypothetical protein TT 34.7 28 0.00096 26.5 3.1 33 63-96 85-117 (119)
8 2ekn_A Probable molybdenum cof 33.0 6.6 0.00023 32.7 -0.9 15 16-30 67-81 (159)
9 1go3_F DNA-directed RNA polyme 32.5 64 0.0022 24.5 4.8 74 75-166 32-105 (107)
10 2ebw_A DNA repair protein REV1 32.2 19 0.00064 25.9 1.6 24 221-244 72-95 (97)
11 3g9g_A Suppressor of yeast pro 29.5 32 0.0011 30.8 3.0 66 57-125 204-269 (287)
12 3pc6_A DNA repair protein XRCC 27.7 25 0.00084 26.7 1.6 21 224-244 74-94 (104)
13 1wf6_A Similar to S.pombe -RAD 27.3 27 0.00093 26.9 1.9 26 220-245 102-127 (132)
14 3qrx_B Melittin; calcium-bindi 26.3 25 0.00085 20.5 1.1 14 207-220 13-26 (26)
15 4id3_A DNA repair protein REV1 25.6 28 0.00097 24.3 1.6 23 221-243 68-90 (92)
16 3ee4_A Probable ribonucleoside 23.5 79 0.0027 28.4 4.4 24 98-121 265-288 (323)
17 4a58_A Ribonucleoside-diphosph 23.5 57 0.0019 29.3 3.5 35 83-120 248-282 (324)
18 4afl_A P29ING4, inhibitor of g 23.4 1E+02 0.0035 22.7 4.4 58 84-149 4-61 (104)
19 3fwc_B Nuclear mRNA export pro 21.9 34 0.0012 25.4 1.4 51 42-93 10-60 (85)
20 2jw5_A DNA polymerase lambda; 21.9 43 0.0015 25.1 2.0 23 220-242 79-101 (106)
21 3bts_E Regulatory protein GAL4 21.4 42 0.0014 19.6 1.4 19 40-58 5-23 (26)
22 1jog_A Hypothetical protein HI 20.1 63 0.0022 25.6 2.8 35 62-97 106-140 (146)
No 1
>1v9m_A V-type ATP synthase subunit C; VOV1-ATPase, V-type ATPase, the C subunit, thermus thermophi riken structural genomics/proteomics initiative; 1.85A {Thermus thermophilus} SCOP: f.40.1.1 PDB: 1r5z_A 3j0j_M*
Probab=100.00 E-value=8.1e-45 Score=328.41 Aligned_cols=224 Identities=17% Similarity=0.195 Sum_probs=195.0
Q ss_pred CchhHHHHHHhhhcCCChHHHHhhhcCCCCccc--chhhhhcCCHHHHHHHHHhcCCCchhhhhccCccccccccHHHHH
Q 025862 1 MIDNVVLIVTGTLHERDVQELLEKCHPLGMFDS--IATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMR 78 (247)
Q Consensus 1 MIdNv~lLi~g~~~~r~~~ell~~chPLG~F~~--l~~l~va~~~~eLy~~vLvdTPla~yf~~~l~~~dlde~nieiir 78 (247)
||+||+.+|+|+.+|++.+++. ||| |.|+. |+++..|+|++|++. +|.+||+++++..+... +.+.|++.++
T Consensus 92 di~Nik~ilr~~~~~~~~~~l~--~~~-g~~~~~~l~~l~~a~~~~el~~-~L~~t~y~~~l~~~~~~--~~~~~~~~~e 165 (323)
T 1v9m_A 92 DLHNLQALLRAKATGRPFEEVL--LLP-GTLREEVWRQAYEAQDPAGMAQ-VLAVPGHPLARALRAVL--RETQDLARVE 165 (323)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCC--CCS-CSSCHHHHHHHHHSSSHHHHHH-HHHTTTCHHHHHHHHHH--TTCCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccccc--cCC-CCCCHHHHHHHHhCCCHHHHHH-HHhccccchHHHHHHHH--HHcCCcHHHH
Confidence 6899999999999999999988 999 99995 999999999999995 67999988887766543 5555999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhHHHHHHHHHHHHhcCCCCCHHhhhccccCCCC-CChhhHHhhccCCCh
Q 025862 79 NTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGL-LYPYGHEELAVCEDI 157 (247)
Q Consensus 79 n~L~K~yLEdfy~fc~~lg~~t~evM~~iL~fEADrr~I~ItlNs~~~~L~~~~r~~l~p~~G~-L~p~~~~~La~a~d~ 157 (247)
+.|+|+|+++++++|+++|| ++|++++++++|+++|++++|+++.+++ .+. ++|.+|. |+|+++..|+++++
T Consensus 166 ~~Ldk~y~~~~~~~~~~~~~---~~l~~~~~~~iD~~Ni~~~lr~~~~~~~--i~~-~li~~G~~l~~~~l~~l~~~~~- 238 (323)
T 1v9m_A 166 ALLAKRFFEDVAKAAKGLDQ---PALRDYLALEVDAENLRTAFKLQGSGLA--PDA-FFLKGGRFVDRVRFARLMEGDY- 238 (323)
T ss_dssp HHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHHHHHTTTSCCC--GGG-TCCSSCSSCCHHHHHHHHTTCG-
T ss_pred HHHHHHHHHHHHHHHhhcCh---HHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHH-hccCCCCccCHHHHHHHHhCcH-
Confidence 99999999999999999887 6999999999999999999999998886 444 8888997 99999999999999
Q ss_pred HHHHHHhhcCcccHHhhhhcCCCCCCcHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHhhhHHHHHHHhhhcc-c
Q 025862 158 DQVRGVMEKYPPYQSIFSKLSYGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQ-K 236 (247)
Q Consensus 158 e~v~~~l~~~~~Y~~i~~~~~~~~~~~lEd~f~~~ev~~~~~af~qqf~~g~fyaylklKEqEIRNi~WIaecI~q~~-~ 236 (247)
++.+++++++ |+..+... +...+|++++.+.+++++.++.+||++||++||+++||||||||+||+|||+|+- +
T Consensus 239 -~~~~~l~~t~-Y~~~~~~~---~~~~~E~~~~~~~~~~~~~~~~~~f~~~~~~ayl~~kE~Ei~nl~~I~~~~~~~l~~ 313 (323)
T 1v9m_A 239 -AVLDELSGTP-FSGLSGVR---DLKALERGLRCVLLKEAKKGVQDPLGVGLVLAYVKEREWEAVRLRLLARRAYFGLPR 313 (323)
T ss_dssp -GGGGSCTTST-TGGGTTCC---SHHHHHHHHHHHHHHHHGGGGGCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCH
T ss_pred -HHHHHHcCCC-HHHHhccC---CHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 9999999977 99988654 3358999999999999977999999999999999999999999999999999984 3
Q ss_pred cccccc
Q 025862 237 SRVHDS 242 (247)
Q Consensus 237 ~~i~~~ 242 (247)
+.|.++
T Consensus 314 e~i~~~ 319 (323)
T 1v9m_A 314 AQVEEE 319 (323)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 2
>1v9m_A V-type ATP synthase subunit C; VOV1-ATPase, V-type ATPase, the C subunit, thermus thermophi riken structural genomics/proteomics initiative; 1.85A {Thermus thermophilus} SCOP: f.40.1.1 PDB: 1r5z_A 3j0j_M*
Probab=99.01 E-value=3.9e-09 Score=94.82 Aligned_cols=188 Identities=11% Similarity=0.040 Sum_probs=132.8
Q ss_pred cchhhhhcCCHHHHHHHHHhcCCCchhhhhccCccccccccHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhHH
Q 025862 33 SIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEA 112 (247)
Q Consensus 33 ~l~~l~va~~~~eLy~~vLvdTPla~yf~~~l~~~dlde~nieiirn~L~K~yLEdfy~fc~~lg~~t~evM~~iL~fEA 112 (247)
++..|.- +|++|+.+.+ -+|+|++++.+. + ..-++..|.+.+...|-......+|+.++ +-+++...-
T Consensus 24 ~~~~L~~-~sl~e~~~~L-~~t~Y~~~l~~~------~---~~~iE~~L~~~l~~~~~~l~~~~~~~~~~-~~~~~~~~~ 91 (323)
T 1v9m_A 24 FFQEALD-LSFADFLRLL-SETVYGGELAGQ------G---LPDVDRAVLRTQAKLVGDLPRLVTGEARE-AVRLLLLRN 91 (323)
T ss_dssp HHHHHTT-CCHHHHHHHH-HTSGGGGGCCCS------S---HHHHHHHHHHHHHHHTTTHHHHCCHHHHH-HHHHHHHHH
T ss_pred HHHHHHh-CCHHHHHHHH-hcCchHHHHhhc------C---HHHHHHHHHHHHHHHHHHHHHHCCccHHH-HHHHHHHHH
Confidence 5667777 9999999998 779999987532 1 45678999998888866555666776555 446778999
Q ss_pred HHHHHHHHHHhcCCCCCHHhhhccccCCCCCChhhHHhhccCCChHHHHHHhhcCcccHHhhhhc----CCCCCCcHHHH
Q 025862 113 DRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGVMEKYPPYQSIFSKL----SYGESQMLDKA 188 (247)
Q Consensus 113 Drr~I~ItlNs~~~~L~~~~r~~l~p~~G~L~p~~~~~La~a~d~e~v~~~l~~~~~Y~~i~~~~----~~~~~~~lEd~ 188 (247)
|..+|+..+.++-.+.++++.. +.| |.+....++.|.++.|++++.+++.+++ |...+... ...+...+|..
T Consensus 92 di~Nik~ilr~~~~~~~~~~l~-~~~--g~~~~~~l~~l~~a~~~~el~~~L~~t~-y~~~l~~~~~~~~~~~~~~~e~~ 167 (323)
T 1v9m_A 92 DLHNLQALLRAKATGRPFEEVL-LLP--GTLREEVWRQAYEAQDPAGMAQVLAVPG-HPLARALRAVLRETQDLARVEAL 167 (323)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCC-CCS--CSSCHHHHHHHHHSSSHHHHHHHHHTTT-CHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccccc-cCC--CCCCHHHHHHHHhCCCHHHHHHHHhccc-cchHHHHHHHHHHcCCcHHHHHH
Confidence 9999999999985555666555 777 9999999999999999999999999997 44333221 10121223333
Q ss_pred HH----HHHHHHHHHHhhhhcchHHHHHHHHHHHHHhhhHHHHHHHhhhccccccccccc
Q 025862 189 FY----EEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRVHDSVV 244 (247)
Q Consensus 189 f~----~~ev~~~~~af~qqf~~g~fyaylklKEqEIRNi~WIaecI~q~~~~~i~~~i~ 244 (247)
++ +.-.+.++ .++-.++-.|+. .|-+++||.|+-+|+.++. + +.++++
T Consensus 168 Ldk~y~~~~~~~~~-----~~~~~~l~~~~~-~~iD~~Ni~~~lr~~~~~~-~-i~~~li 219 (323)
T 1v9m_A 168 LAKRFFEDVAKAAK-----GLDQPALRDYLA-LEVDAENLRTAFKLQGSGL-A-PDAFFL 219 (323)
T ss_dssp HHHHHHHHHHC------------CHHHHHHH-HHHHHHHHHHHHHTTTSCC-C-GGGTCC
T ss_pred HHHHHHHHHHHHHh-----hcChHHHHHHHH-HHHHHHHHHHHHHHHHcCC-C-HHHhcc
Confidence 33 33322221 123367777755 7899999999999999986 4 655554
No 3
>1ekr_A Molybdenum cofactor biosynthesis protein C; MOAC, molybdenum cofactor (MOCO), MOCO biosynthesis, MOCO DE translation; 2.00A {Escherichia coli} SCOP: d.58.21.1 PDB: 1eks_A*
Probab=41.99 E-value=5.7 Score=33.11 Aligned_cols=21 Identities=29% Similarity=0.623 Sum_probs=15.3
Q ss_pred HhhhcCCChHHHHhhhcCCCC
Q 025862 10 TGTLHERDVQELLEKCHPLGM 30 (247)
Q Consensus 10 ~g~~~~r~~~ell~~chPLG~ 30 (247)
.|...=+-..+|++.||||..
T Consensus 61 AgImaAK~T~~LIPlCHpl~l 81 (161)
T 1ekr_A 61 AGIQAAKRTWDLIPLCHPLML 81 (161)
T ss_dssp HHHHHHHTHHHHSTTCCCCCC
T ss_pred HHHHHHHhhhhhCcccCcCcc
Confidence 333444557899999999975
No 4
>2ohd_A Probable molybdenum cofactor biosynthesis protein; alpha + beta, biosynthetic protein; 2.20A {Sulfolobus tokodaii str}
Probab=37.29 E-value=5.7 Score=32.79 Aligned_cols=17 Identities=29% Similarity=0.780 Sum_probs=12.9
Q ss_pred cCCChHHHHhhhcCCCC
Q 025862 14 HERDVQELLEKCHPLGM 30 (247)
Q Consensus 14 ~~r~~~ell~~chPLG~ 30 (247)
.=.-..||++.||||..
T Consensus 56 aaK~T~~LIPlCHpl~l 72 (151)
T 2ohd_A 56 AAKKTPELIPMCHPIPL 72 (151)
T ss_dssp HHHHHHHHSTTCCCCCC
T ss_pred HhhhHhhhCcccCcCcc
Confidence 33446799999999874
No 5
>2iih_A Molybdenum cofactor biosynthesis protein C; MOAC, molybdenum cofactor (MOCO), MOCO biosynthesis, structu genomics, NPPSFA; 1.75A {Thermus thermophilus} PDB: 2ide_A 3jqj_A 3jqk_A 3jqm_A*
Probab=36.34 E-value=6 Score=32.82 Aligned_cols=20 Identities=35% Similarity=0.823 Sum_probs=14.5
Q ss_pred hhhcCCChHHHHhhhcCCCC
Q 025862 11 GTLHERDVQELLEKCHPLGM 30 (247)
Q Consensus 11 g~~~~r~~~ell~~chPLG~ 30 (247)
|...=+-..||++.||||..
T Consensus 60 gImaAK~T~~LIPlCHpl~l 79 (157)
T 2iih_A 60 GILAAKKTADLIPLCHPLPL 79 (157)
T ss_dssp HHHHHHHHHHHSTTCCCCCC
T ss_pred HHHHHHHHHhhCcccCcccc
Confidence 33344456799999999875
No 6
>2eey_A Molybdopterin biosynthesis; molybdenium precursor bosynthesis, structural genomics; 1.94A {Geobacillus kaustophilus}
Probab=36.17 E-value=6.1 Score=32.95 Aligned_cols=21 Identities=29% Similarity=0.765 Sum_probs=15.1
Q ss_pred HhhhcCCChHHHHhhhcCCCC
Q 025862 10 TGTLHERDVQELLEKCHPLGM 30 (247)
Q Consensus 10 ~g~~~~r~~~ell~~chPLG~ 30 (247)
.|...=+-..||++.||||..
T Consensus 61 AgImaAK~T~~LIPlCHpl~l 81 (162)
T 2eey_A 61 AGVMAAKKTADLIPMCHPLML 81 (162)
T ss_dssp HHHHHHHHHHHHSTTCCCCCC
T ss_pred HHHHHHHHHHhhCcccCcccc
Confidence 344444556799999999875
No 7
>1wwp_A Hypothetical protein TTHA0636; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 2.11A {Thermus thermophilus HB8}
Probab=34.69 E-value=28 Score=26.50 Aligned_cols=33 Identities=12% Similarity=0.119 Sum_probs=28.4
Q ss_pred ccCccccccccHHHHHHHHHHHHHHHHHHHHHhc
Q 025862 63 CITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKL 96 (247)
Q Consensus 63 ~l~~~dlde~nieiirn~L~K~yLEdfy~fc~~l 96 (247)
-+..++|++.+.+.+-+.+.+ |+.+|.+|.+.+
T Consensus 85 N~~vH~Y~~~~~~~v~~~i~~-~l~~~~~l~~~i 117 (119)
T 1wwp_A 85 SLTVHTYNEPLARAIFRRLPD-YARLMEQVLGRL 117 (119)
T ss_dssp HHGGGTTSHHHHHHHHHHHHH-HHHHHHHHHHHT
T ss_pred hHhcccccHhhHHHHHHHHHH-HHHHHHHHHHHH
Confidence 345668999999999999988 999999998875
No 8
>2ekn_A Probable molybdenum cofactor biosynthesis protein; structural genomic NPPSFA, national project on protein structural and function analyses; HET: FLC; 2.05A {Pyrococcus horikoshii}
Probab=32.96 E-value=6.6 Score=32.65 Aligned_cols=15 Identities=33% Similarity=0.862 Sum_probs=12.2
Q ss_pred CChHHHHhhhcCCCC
Q 025862 16 RDVQELLEKCHPLGM 30 (247)
Q Consensus 16 r~~~ell~~chPLG~ 30 (247)
+-..||++.||||..
T Consensus 67 K~T~~LIPlCHpl~l 81 (159)
T 2ekn_A 67 KRTPELIPLCHPIPI 81 (159)
T ss_dssp HHHHHHSTTCCCCCE
T ss_pred hhHHhhCcccCcccc
Confidence 346799999999873
No 9
>1go3_F DNA-directed RNA polymerase subunit F; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: a.60.8.2
Probab=32.46 E-value=64 Score=24.51 Aligned_cols=74 Identities=19% Similarity=0.308 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhHHHHHHHHHHHHhcCCCCCHHhhhccccCCCCCChhhHHhhccC
Q 025862 75 EIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVC 154 (247)
Q Consensus 75 eiirn~L~K~yLEdfy~fc~~lg~~t~evM~~iL~fEADrr~I~ItlNs~~~~L~~~~r~~l~p~~G~L~p~~~~~La~a 154 (247)
+.++.+| .|++.|-++ -.....++...|++..-+....--+.|-.-. +.++-+.++|+... -
T Consensus 32 ~~~~ktl--~y~~kFsk~---~~e~a~~l~e~L~~~~l~e~~a~~I~nl~P~--t~dElraii~~~~~-----------~ 93 (107)
T 1go3_F 32 YEQGCAL--DYLQKFAKL---DKEEAKKLVEELISLGIDEKTAVKIADILPE--DLDDLRAIYYKREL-----------P 93 (107)
T ss_dssp HHHHHHH--HHHHHHCCS---CHHHHHHHHHHHHHTTCCHHHHHHHHHHCCC--SHHHHHHHSTTSCC-----------C
T ss_pred HHHHHHH--HHHHHHhCC---CHHHHHHHHHHHHhCCCCHHHHHHHHHhCCC--CHHHHHHHHhcccC-----------c
Confidence 4577788 888888765 1234567777788888887777777777643 47888899998753 4
Q ss_pred CChHHHHHHhhc
Q 025862 155 EDIDQVRGVMEK 166 (247)
Q Consensus 155 ~d~e~v~~~l~~ 166 (247)
++.+++-..+..
T Consensus 94 eel~~ILd~l~k 105 (107)
T 1go3_F 94 ENAEEILEIVRK 105 (107)
T ss_dssp TTHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 10
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=32.20 E-value=19 Score=25.88 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=19.1
Q ss_pred hhhHHHHHHHhhhccccccccccc
Q 025862 221 IRNLMWISECVAQNQKSRVHDSVV 244 (247)
Q Consensus 221 IRNi~WIaecI~q~~~~~i~~~i~ 244 (247)
|=+..||-+|+.++++-..+.|..
T Consensus 72 iV~p~Wl~dci~~~~~l~~~~Y~l 95 (97)
T 2ebw_A 72 VIRPEWIVESIKAGRLLSYIPYQL 95 (97)
T ss_dssp CBCTHHHHHHHHHTSCCCSGGGBS
T ss_pred EeChHHHHHHHHcCCccCchHcEe
Confidence 445789999999998877777753
No 11
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae}
Probab=29.55 E-value=32 Score=30.76 Aligned_cols=66 Identities=17% Similarity=0.389 Sum_probs=50.8
Q ss_pred chhhhhccCccccccccHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhHHHHHHHHHHHHhcC
Q 025862 57 APYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIG 125 (247)
Q Consensus 57 a~yf~~~l~~~dlde~nieiirn~L~K~yLEdfy~fc~~lg~~t~evM~~iL~fEADrr~I~ItlNs~~ 125 (247)
+||+.+.+-+ +|+..+..+++.|-+ |--..=.+|.+.+-...+++..+++++.|.-.-...-..-+
T Consensus 204 aP~~fe~fQ~--lEEeRL~~Lkd~L~~-y~~~~sd~~~~~~~~~E~~~~~ll~~dve~eI~~Fa~~~~~ 269 (287)
T 3g9g_A 204 SPYLFELFET--IDYNRLDTLKNCMLR-FQTSFSDYLLNTTKECETVMTKFLAFEPQSEIDRFAKDASQ 269 (287)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 6777777644 999999999999954 55677777887777778899999998888877666554443
No 12
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=27.70 E-value=25 Score=26.74 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=17.4
Q ss_pred HHHHHHHhhhccccccccccc
Q 025862 224 LMWISECVAQNQKSRVHDSVV 244 (247)
Q Consensus 224 i~WIaecI~q~~~~~i~~~i~ 244 (247)
=.||-+|+.++++--.+.|..
T Consensus 74 P~WI~~Ci~~~klvp~~~y~~ 94 (104)
T 3pc6_A 74 PRWIYSCNEKQKLLPHQLYGV 94 (104)
T ss_dssp HHHHHHHHHHTSCCCGGGGBC
T ss_pred cHHHHHHHhcCccCCccccee
Confidence 469999999999888877754
No 13
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=27.35 E-value=27 Score=26.91 Aligned_cols=26 Identities=12% Similarity=0.273 Sum_probs=21.5
Q ss_pred HhhhHHHHHHHhhhcccccccccccc
Q 025862 220 EIRNLMWISECVAQNQKSRVHDSVVF 245 (247)
Q Consensus 220 EIRNi~WIaecI~q~~~~~i~~~i~~ 245 (247)
.|=+..||-+|+.++++-.-+.|.|.
T Consensus 102 ~iV~~~Wv~dsi~~~~ll~e~~Y~~~ 127 (132)
T 1wf6_A 102 HVVGAKWLLECFSKGYMLSEEPYIHS 127 (132)
T ss_dssp CEEEHHHHHHHHHHSSCCCSGGGBCC
T ss_pred eEechHHHHHHHHcCCcCCHhhccCC
Confidence 34568899999999998888888764
No 14
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=26.35 E-value=25 Score=20.53 Aligned_cols=14 Identities=7% Similarity=0.411 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHH
Q 025862 207 YGVFFAYMRLREQE 220 (247)
Q Consensus 207 ~g~fyaylklKEqE 220 (247)
.-++.||+|.|.||
T Consensus 13 LP~liSWiK~kr~~ 26 (26)
T 3qrx_B 13 LPALISWIKRKRQQ 26 (26)
T ss_pred chHHHHHHHHHhcC
Confidence 45788999998875
No 15
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=25.58 E-value=28 Score=24.32 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=18.1
Q ss_pred hhhHHHHHHHhhhcccccccccc
Q 025862 221 IRNLMWISECVAQNQKSRVHDSV 243 (247)
Q Consensus 221 IRNi~WIaecI~q~~~~~i~~~i 243 (247)
|=+-.||-+|+.++++-..+.|.
T Consensus 68 iV~~~Wi~dci~~~~~l~e~~Y~ 90 (92)
T 4id3_A 68 VVSPDWIVDSVKEARLLPWQNYS 90 (92)
T ss_dssp EECTHHHHHHHHHTSCCCGGGGB
T ss_pred EEcccHHHHHHHcCCcCChhhcc
Confidence 33567999999999887777764
No 16
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, C monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} PDB: 4ac8_A*
Probab=23.49 E-value=79 Score=28.37 Aligned_cols=24 Identities=13% Similarity=-0.011 Sum_probs=21.6
Q ss_pred CchHHHHHHHHhhHHHHHHHHHHH
Q 025862 98 GATAEIMSDLLAFEADRRAVNITI 121 (247)
Q Consensus 98 ~~t~evM~~iL~fEADrr~I~Itl 121 (247)
|-|++.|+.++++-||||--+|-+
T Consensus 265 Gl~~~~~~~Yi~y~AnrrL~~LG~ 288 (323)
T 3ee4_A 265 DLSKDDFLQYSTDKGMRRFGTISN 288 (323)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCC
Confidence 667999999999999999888876
No 17
>4a58_A Ribonucleoside-diphosphate reductase small chain; oxidoreductase, epstein-BARR virus, R2 subunit; 1.68A {Human herpesvirus 4} PDB: 4a5c_A 4a5d_A 4a5e_A 4a5f_A 4a5h_A 4a5i_A 4a5j_A
Probab=23.47 E-value=57 Score=29.33 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHhhHHHHHHHHHH
Q 025862 83 KAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNIT 120 (247)
Q Consensus 83 K~yLEdfy~fc~~lg~~t~evM~~iL~fEADrr~I~It 120 (247)
+.|+++.+. ..+|-|++.|+.++++-||||--++=
T Consensus 248 ~~~~~~~~~---~~~~ln~~~~~~Yi~y~An~~L~~LG 282 (324)
T 4a58_A 248 TAFIEARGE---GVTLVDVRAIKQFLEATADRILGDIG 282 (324)
T ss_dssp HHHHHHHST---TCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhc---cccCCCHHHHHHHHHHHHHHHHHHCC
Confidence 467777764 45667899999999999999976653
No 18
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=23.36 E-value=1e+02 Score=22.73 Aligned_cols=58 Identities=16% Similarity=0.124 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHhhHHHHHHHHHHHHhcCCCCCHHhhhccccCCCCCChhhHH
Q 025862 84 AYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHE 149 (247)
Q Consensus 84 ~yLEdfy~fc~~lg~~t~evM~~iL~fEADrr~I~ItlNs~~~~L~~~~r~~l~p~~G~L~p~~~~ 149 (247)
.|||+|.....+++.+-...+..| -|-|.+.....-. . .+...+++-..|++.|...+
T Consensus 4 ~yledyld~ie~LP~El~r~~~~i--relD~~~~~~~~~-i-----~~~~~~~~~~~~~~~~~~r~ 61 (104)
T 4afl_A 4 MYLEHYLDSIENLPFELQRNFQLM--RDLDQRTEDLKAE-I-----DKLATEYMSSARSLSSEEKL 61 (104)
T ss_dssp HHHHHHHHSGGGHHHHHHHHHHHH--HHHHHHHHHHHHH-H-----HHHHHHHHTCCSCCCHHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHH--HHHHHHHHHHHHH-H-----HHHHHHHHHHCCCCChhhhH
Confidence 499999999999988878888888 6777776655432 1 22345666677888776554
No 19
>3fwc_B Nuclear mRNA export protein SAC3; gene gating, complex, calcium, cell cycle, cell division, mitosis, mRNA transport, nuclear pore complex, nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=21.91 E-value=34 Score=25.36 Aligned_cols=51 Identities=18% Similarity=0.285 Sum_probs=37.4
Q ss_pred CHHHHHHHHHhcCCCchhhhhccCccccccccHHHHHHHHHHHHHHHHHHHH
Q 025862 42 NMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFC 93 (247)
Q Consensus 42 ~~~eLy~~vLvdTPla~yf~~~l~~~dlde~nieiirn~L~K~yLEdfy~fc 93 (247)
-.+++.+.| |+..+.....+|+..+.-...-|+-+-.-||.|+|-+-.-+|
T Consensus 10 i~~~ii~~v-V~~el~~~l~~~l~~~~~R~~iI~sLs~eLy~AFihE~lY~~ 60 (85)
T 3fwc_B 10 IANDLVKEV-VNSSVISIVKREFSEANYRKDFIDTMTRELYDAFLHERLYLI 60 (85)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 356677777 999999999999876555555788888888888775544333
No 20
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=21.90 E-value=43 Score=25.10 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=18.1
Q ss_pred HhhhHHHHHHHhhhccccccccc
Q 025862 220 EIRNLMWISECVAQNQKSRVHDS 242 (247)
Q Consensus 220 EIRNi~WIaecI~q~~~~~i~~~ 242 (247)
.|=|..|+.||+.++..=..+.|
T Consensus 79 ~iV~~~Wv~dci~~~~llde~~y 101 (106)
T 2jw5_A 79 QLVKSAWLSLCLQERRLVDVAGF 101 (106)
T ss_dssp EEEEHHHHHHHHHTCSCCCGGGT
T ss_pred EEecCchHHHHHhcCcccCcccc
Confidence 44589999999999887655555
No 21
>3bts_E Regulatory protein GAL4; eukaryotic transcription complex, NAD, rossmann fold, acetylation, carbohydrate metabolism, DNA-binding; HET: NAD; 2.70A {Saccharomyces cerevisiae}
Probab=21.39 E-value=42 Score=19.57 Aligned_cols=19 Identities=16% Similarity=0.382 Sum_probs=14.9
Q ss_pred cCCHHHHHHHHHhcCCCch
Q 025862 40 AQNMRELYRLVLVDTPLAP 58 (247)
Q Consensus 40 a~~~~eLy~~vLvdTPla~ 58 (247)
.++++|+|+.|.-|-..+|
T Consensus 5 TTTMDDvyNylFdd~d~~p 23 (26)
T 3bts_E 5 TTTMDDVYNYLFDDEDTXX 23 (26)
T ss_pred cccHHHHHHHhcCcccccc
Confidence 5689999999976665555
No 22
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=20.07 E-value=63 Score=25.63 Aligned_cols=35 Identities=17% Similarity=0.157 Sum_probs=29.3
Q ss_pred hccCccccccccHHHHHHHHHHHHHHHHHHHHHhcC
Q 025862 62 ECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLG 97 (247)
Q Consensus 62 ~~l~~~dlde~nieiirn~L~K~yLEdfy~fc~~lg 97 (247)
+-++.++|++.+.+.+-+.+.+ |+.+|.+|.+.+.
T Consensus 106 RN~tvH~Y~e~~a~~v~~~I~~-~l~~f~~l~~~l~ 140 (146)
T 1jog_A 106 RNITSHTYDQEKAMAVYAQIDD-FLIESSFLLEQLR 140 (146)
T ss_dssp HTTGGGTTSHHHHHHHHHTHHH-HHHHHHHHHHHHH
T ss_pred hhHhcccccHhhHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3455678999999999999988 9999999988764
Done!