Query 025863
Match_columns 247
No_of_seqs 143 out of 1138
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 10:22:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025863.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025863hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07587 ML_beta-AS mammalian-l 100.0 4E-32 8.6E-37 250.5 16.2 197 28-246 18-231 (363)
2 cd07572 nit Nit1, Nit 2, and r 100.0 1.8E-29 3.9E-34 221.7 16.5 157 84-246 1-159 (265)
3 PLN00202 beta-ureidopropionase 100.0 2.3E-29 5E-34 234.9 16.8 196 28-246 37-252 (405)
4 PLN02798 nitrilase 100.0 4.1E-29 9E-34 223.1 17.7 160 79-246 7-169 (286)
5 TIGR03381 agmatine_aguB N-carb 100.0 5.2E-29 1.1E-33 220.5 17.5 151 83-246 1-156 (279)
6 cd07583 nitrilase_5 Uncharacte 100.0 1.3E-28 2.8E-33 215.3 16.4 147 84-245 1-148 (253)
7 cd07568 ML_beta-AS_like mammal 100.0 4E-28 8.6E-33 216.2 17.7 153 81-246 2-168 (287)
8 PRK10438 C-N hydrolase family 100.0 5.1E-28 1.1E-32 213.1 16.9 146 80-246 1-147 (256)
9 cd07576 R-amidase_like Pseudom 100.0 1.1E-27 2.4E-32 209.2 16.8 146 84-246 1-148 (254)
10 PLN02747 N-carbamolyputrescine 100.0 1.5E-27 3.2E-32 213.8 17.0 154 80-246 4-162 (296)
11 PLN02504 nitrilase 100.0 2.9E-27 6.2E-32 217.0 18.2 156 78-246 20-192 (346)
12 cd07579 nitrilase_1_R2 Second 100.0 2.3E-27 5E-32 211.6 15.7 142 84-246 1-142 (279)
13 cd07573 CPA N-carbamoylputresc 99.9 5.6E-27 1.2E-31 208.2 17.4 154 83-246 1-157 (284)
14 cd07569 DCase N-carbamyl-D-ami 99.9 5.1E-27 1.1E-31 211.1 17.2 157 82-246 3-177 (302)
15 cd07564 nitrilases_CHs Nitrila 99.9 3.9E-27 8.5E-32 211.5 15.7 149 83-246 1-163 (297)
16 PF00795 CN_hydrolase: Carbon- 99.9 2.6E-27 5.7E-32 197.3 13.1 152 84-246 1-167 (186)
17 cd07584 nitrilase_6 Uncharacte 99.9 5.6E-27 1.2E-31 205.5 15.4 148 84-246 1-152 (258)
18 cd07570 GAT_Gln-NAD-synth Glut 99.9 5.8E-27 1.2E-31 205.8 14.5 150 84-246 1-151 (261)
19 cd07581 nitrilase_3 Uncharacte 99.9 1.1E-26 2.4E-31 203.2 16.2 148 85-246 1-153 (255)
20 cd07575 Xc-1258_like Xanthomon 99.9 1.5E-26 3.4E-31 202.7 16.5 144 83-245 1-145 (252)
21 cd07578 nitrilase_1_R1 First n 99.9 1.7E-26 3.6E-31 203.0 16.5 147 83-245 1-151 (258)
22 cd07585 nitrilase_7 Uncharacte 99.9 1.7E-26 3.8E-31 202.7 15.9 145 84-246 1-146 (261)
23 cd07580 nitrilase_2 Uncharacte 99.9 1.6E-26 3.4E-31 204.1 15.2 148 84-246 1-150 (268)
24 cd07567 biotinidase_like bioti 99.9 2.7E-26 5.9E-31 206.7 15.4 150 83-246 1-186 (299)
25 cd07574 nitrilase_Rim1_like Un 99.9 2.2E-26 4.8E-31 204.2 14.5 151 83-246 1-159 (280)
26 cd07197 nitrilase Nitrilase su 99.9 6.4E-26 1.4E-30 196.9 16.2 148 85-246 1-149 (253)
27 cd07577 Ph0642_like Pyrococcus 99.9 5.1E-26 1.1E-30 199.9 15.1 142 84-246 1-147 (259)
28 COG0388 Predicted amidohydrola 99.9 1.1E-25 2.3E-30 199.5 16.1 150 82-246 2-155 (274)
29 KOG0806 Carbon-nitrogen hydrol 99.9 3.2E-26 7E-31 202.7 10.6 170 73-245 4-176 (298)
30 cd07565 aliphatic_amidase alip 99.9 2.7E-25 5.9E-30 199.4 16.7 145 83-246 1-159 (291)
31 cd07586 nitrilase_8 Uncharacte 99.9 2.1E-25 4.5E-30 196.7 15.1 146 84-246 1-149 (269)
32 cd07566 ScNTA1_like Saccharomy 99.9 3.1E-25 6.7E-30 199.5 16.2 150 84-243 1-170 (295)
33 cd07571 ALP_N-acyl_transferase 99.9 1.9E-25 4.2E-30 198.1 12.9 145 83-245 1-165 (270)
34 PRK13981 NAD synthetase; Provi 99.9 1.1E-24 2.4E-29 210.5 16.7 148 83-246 1-151 (540)
35 PRK02628 nadE NAD synthetase; 99.9 1.5E-24 3.3E-29 214.3 17.2 152 81-245 11-183 (679)
36 PRK13287 amiF formamidase; Pro 99.9 5.3E-24 1.2E-28 194.5 17.3 150 78-246 9-171 (333)
37 PLN02339 NAD+ synthase (glutam 99.9 2.2E-24 4.8E-29 213.4 15.5 154 80-246 1-180 (700)
38 cd07582 nitrilase_4 Uncharacte 99.9 1.2E-23 2.7E-28 188.5 16.0 153 84-246 2-179 (294)
39 KOG0807 Carbon-nitrogen hydrol 99.9 1.1E-24 2.3E-29 186.3 8.4 154 83-244 16-174 (295)
40 PRK13286 amiE acylamide amidoh 99.9 1.2E-23 2.5E-28 193.0 14.9 149 80-246 10-172 (345)
41 KOG0805 Carbon-nitrogen hydrol 99.9 1E-22 2.2E-27 174.9 12.4 153 79-247 14-186 (337)
42 TIGR00546 lnt apolipoprotein N 99.9 1.8E-22 4E-27 187.7 11.3 148 81-246 158-326 (391)
43 KOG0808 Carbon-nitrogen hydrol 99.9 5.8E-22 1.3E-26 171.4 11.7 195 28-244 28-239 (387)
44 PRK12291 apolipoprotein N-acyl 99.8 1.1E-20 2.4E-25 177.4 14.1 141 83-245 195-353 (418)
45 PRK00302 lnt apolipoprotein N- 99.8 5.5E-21 1.2E-25 183.3 10.9 147 82-246 219-386 (505)
46 PRK13825 conjugal transfer pro 99.7 3.1E-17 6.8E-22 152.6 14.5 140 84-245 187-334 (388)
47 COG0815 Lnt Apolipoprotein N-a 99.6 2.1E-15 4.4E-20 145.0 12.0 149 80-246 225-397 (518)
48 KOG2303 Predicted NAD synthase 98.8 1.2E-08 2.7E-13 95.7 7.9 131 79-222 1-135 (706)
49 cd07565 aliphatic_amidase alip 87.0 5.5 0.00012 35.6 9.5 71 106-193 161-232 (291)
50 KOG0806 Carbon-nitrogen hydrol 85.4 1.1 2.5E-05 40.5 4.1 42 158-201 110-151 (298)
51 cd07576 R-amidase_like Pseudom 83.1 9.9 0.00021 32.6 9.0 69 107-192 151-220 (254)
52 cd07580 nitrilase_2 Uncharacte 81.3 16 0.00034 31.8 9.7 74 108-192 154-228 (268)
53 cd07584 nitrilase_6 Uncharacte 79.5 16 0.00035 31.4 9.1 70 106-192 154-224 (258)
54 cd07570 GAT_Gln-NAD-synth Glut 79.4 8.7 0.00019 33.2 7.4 70 108-192 156-226 (261)
55 cd07586 nitrilase_8 Uncharacte 79.0 16 0.00034 31.8 8.9 75 109-193 154-229 (269)
56 cd07572 nit Nit1, Nit 2, and r 78.8 8.4 0.00018 33.3 7.1 70 106-191 161-232 (265)
57 cd07585 nitrilase_7 Uncharacte 78.3 15 0.00033 31.6 8.6 73 107-193 149-223 (261)
58 cd07567 biotinidase_like bioti 77.7 12 0.00025 33.9 7.8 71 106-194 188-260 (299)
59 PRK13286 amiE acylamide amidoh 76.5 23 0.0005 32.7 9.6 71 106-193 174-245 (345)
60 TIGR03381 agmatine_aguB N-carb 75.9 28 0.00061 30.3 9.7 75 107-192 159-239 (279)
61 PRK15018 1-acyl-sn-glycerol-3- 73.6 13 0.00028 32.6 6.8 58 94-166 119-176 (245)
62 cd07197 nitrilase Nitrilase su 71.3 26 0.00056 29.7 8.1 68 108-192 153-221 (253)
63 cd07583 nitrilase_5 Uncharacte 70.9 24 0.00052 30.3 7.9 70 106-192 151-221 (253)
64 cd07581 nitrilase_3 Uncharacte 70.5 26 0.00057 30.0 8.0 69 106-192 155-223 (255)
65 cd07587 ML_beta-AS mammalian-l 70.1 20 0.00043 33.3 7.6 67 109-191 236-319 (363)
66 cd07573 CPA N-carbamoylputresc 69.7 41 0.00088 29.4 9.2 79 106-192 159-242 (284)
67 TIGR00530 AGP_acyltrn 1-acyl-s 69.3 20 0.00043 27.0 6.3 52 100-166 75-126 (130)
68 PRK09856 fructoselysine 3-epim 68.7 24 0.00052 30.7 7.5 64 96-167 85-148 (275)
69 cd07568 ML_beta-AS_like mammal 68.3 44 0.00095 29.3 9.2 71 106-193 170-245 (287)
70 cd07577 Ph0642_like Pyrococcus 68.1 35 0.00076 29.4 8.4 66 107-192 150-220 (259)
71 COG0388 Predicted amidohydrola 66.9 45 0.00097 29.1 8.9 66 111-192 163-230 (274)
72 PRK13210 putative L-xylulose 5 66.3 31 0.00066 30.1 7.7 63 96-166 89-151 (284)
73 cd07582 nitrilase_4 Uncharacte 65.9 50 0.0011 29.2 9.1 70 106-192 181-256 (294)
74 PLN02798 nitrilase 64.5 37 0.0008 30.0 7.9 71 106-192 171-244 (286)
75 PLN02747 N-carbamolyputrescine 63.4 71 0.0015 28.2 9.6 78 106-193 164-250 (296)
76 TIGR00542 hxl6Piso_put hexulos 61.5 46 0.001 29.1 7.9 63 96-166 89-151 (279)
77 cd07990 LPLAT_LCLAT1-like Lyso 60.7 24 0.00052 29.2 5.7 51 97-166 85-137 (193)
78 cd07578 nitrilase_1_R1 First n 60.4 46 0.00099 28.7 7.6 67 107-192 155-222 (258)
79 PLN00202 beta-ureidopropionase 59.9 45 0.00098 31.5 8.0 67 110-192 258-341 (405)
80 PRK13209 L-xylulose 5-phosphat 59.3 47 0.001 29.0 7.6 63 96-166 94-156 (283)
81 PRK13981 NAD synthetase; Provi 57.3 51 0.0011 32.1 8.1 73 106-193 153-226 (540)
82 PF01553 Acyltransferase: Acyl 57.1 29 0.00063 26.1 5.3 26 100-125 77-102 (132)
83 cd01821 Rhamnogalacturan_acety 55.6 61 0.0013 26.5 7.3 63 95-165 88-150 (198)
84 PLN02504 nitrilase 55.4 57 0.0012 30.0 7.7 67 106-192 194-281 (346)
85 smart00563 PlsC Phosphate acyl 52.9 40 0.00087 24.5 5.3 28 98-126 60-87 (118)
86 cd07569 DCase N-carbamyl-D-ami 52.8 1E+02 0.0022 27.3 8.8 38 155-192 221-259 (302)
87 PRK09437 bcp thioredoxin-depen 52.8 72 0.0016 25.0 7.0 38 84-121 31-71 (154)
88 cd07579 nitrilase_1_R2 Second 51.8 64 0.0014 28.5 7.2 84 106-191 144-230 (279)
89 cd03012 TlpA_like_DipZ_like Tl 50.9 99 0.0021 23.4 7.4 91 84-193 24-121 (126)
90 PF01261 AP_endonuc_2: Xylose 49.8 65 0.0014 26.0 6.6 66 96-167 66-131 (213)
91 cd00019 AP2Ec AP endonuclease 48.5 70 0.0015 27.9 6.9 62 96-166 80-141 (279)
92 cd03017 PRX_BCP Peroxiredoxin 48.0 1.1E+02 0.0024 23.2 7.3 28 94-121 37-64 (140)
93 cd07993 LPLAT_DHAPAT-like Lyso 47.0 74 0.0016 26.6 6.6 26 101-126 88-113 (205)
94 KOG2792 Putative cytochrome C 46.3 22 0.00048 31.7 3.2 48 149-198 211-262 (280)
95 PRK10438 C-N hydrolase family 46.2 1E+02 0.0022 26.7 7.6 64 113-193 154-219 (256)
96 PRK13287 amiF formamidase; Pro 44.8 2E+02 0.0044 26.2 9.5 70 106-193 173-244 (333)
97 cd02968 SCO SCO (an acronym fo 44.1 74 0.0016 24.3 5.8 16 180-195 126-141 (142)
98 cd01828 sialate_O-acetylestera 43.8 1.5E+02 0.0032 23.4 7.7 72 84-165 50-128 (169)
99 COG1131 CcmA ABC-type multidru 43.7 85 0.0018 28.1 6.8 72 108-194 148-219 (293)
100 PF08821 CGGC: CGGC domain; I 43.1 83 0.0018 24.1 5.6 55 100-168 51-106 (107)
101 COG1941 FrhG Coenzyme F420-red 43.0 2E+02 0.0044 25.4 8.6 82 80-170 1-87 (247)
102 cd07986 LPLAT_ACT14924-like Ly 42.5 71 0.0015 26.9 5.8 59 98-166 83-141 (210)
103 cd07564 nitrilases_CHs Nitrila 42.3 1.1E+02 0.0025 27.0 7.3 73 106-192 165-253 (297)
104 cd07988 LPLAT_ABO13168-like Ly 42.0 63 0.0014 26.2 5.2 35 114-166 95-129 (163)
105 smart00481 POLIIIAc DNA polyme 41.4 96 0.0021 20.8 5.3 45 102-167 16-60 (67)
106 cd03293 ABC_NrtD_SsuB_transpor 40.3 1.6E+02 0.0035 24.5 7.7 71 110-194 145-216 (220)
107 cd03018 PRX_AhpE_like Peroxire 39.9 1.2E+02 0.0025 23.4 6.4 28 94-121 42-69 (149)
108 COG1120 FepC ABC-type cobalami 38.8 1.1E+02 0.0023 27.4 6.4 76 101-192 143-219 (258)
109 PTZ00056 glutathione peroxidas 38.1 2.4E+02 0.0052 23.6 9.1 38 84-121 40-79 (199)
110 COG1135 AbcC ABC-type metal io 37.9 63 0.0014 29.8 4.9 81 106-201 151-231 (339)
111 cd01832 SGNH_hydrolase_like_1 37.9 1.8E+02 0.0038 23.1 7.3 63 95-165 86-149 (185)
112 cd04501 SGNH_hydrolase_like_4 37.3 1.8E+02 0.0039 23.2 7.3 76 84-165 61-142 (183)
113 PF02630 SCO1-SenC: SCO1/SenC; 37.1 92 0.002 25.5 5.5 45 150-195 124-172 (174)
114 COG4586 ABC-type uncharacteriz 36.8 1.3E+02 0.0029 27.4 6.6 66 112-192 172-237 (325)
115 cd01841 NnaC_like NnaC (CMP-Ne 35.9 2E+02 0.0044 22.6 7.3 75 84-165 53-134 (174)
116 cd00984 DnaB_C DnaB helicase C 34.3 1.4E+02 0.0029 25.3 6.3 62 100-168 108-170 (242)
117 cd08362 BphC5-RrK37_N_like N-t 34.0 1.4E+02 0.003 21.7 5.7 46 148-194 70-115 (120)
118 PLN02901 1-acyl-sn-glycerol-3- 33.8 1.5E+02 0.0033 25.0 6.5 55 97-167 106-160 (214)
119 cd07241 Glo_EDI_BRP_like_3 Thi 33.3 1.8E+02 0.0039 21.0 6.2 42 148-192 82-123 (125)
120 cd01838 Isoamyl_acetate_hydrol 33.2 2E+02 0.0044 22.9 7.0 75 82-165 63-160 (199)
121 cd06551 LPLAT Lysophospholipid 33.0 2.4E+02 0.0052 22.4 7.4 54 100-168 87-141 (187)
122 cd03297 ABC_ModC_molybdenum_tr 32.7 1.9E+02 0.004 24.1 6.8 68 109-191 144-211 (214)
123 cd01822 Lysophospholipase_L1_l 32.5 1.7E+02 0.0037 22.9 6.3 58 95-165 82-139 (177)
124 cd07254 Glo_EDI_BRP_like_20 Th 32.4 1.4E+02 0.0031 21.7 5.5 46 150-196 72-117 (120)
125 cd07261 Glo_EDI_BRP_like_11 Th 31.8 1.6E+02 0.0034 21.3 5.6 42 149-194 72-113 (114)
126 TIGR02314 ABC_MetN D-methionin 31.7 1.6E+02 0.0036 27.0 6.7 71 107-192 151-221 (343)
127 PF14488 DUF4434: Domain of un 31.4 2E+02 0.0044 23.5 6.7 65 101-167 20-84 (166)
128 cd07266 HPCD_N_class_II N-term 31.2 1.2E+02 0.0027 22.1 5.0 45 148-194 72-116 (121)
129 TIGR03569 NeuB_NnaB N-acetylne 31.1 1.1E+02 0.0023 28.2 5.4 72 96-167 11-95 (329)
130 COG1121 ZnuC ABC-type Mn/Zn tr 30.7 1.7E+02 0.0037 26.0 6.3 67 104-185 147-213 (254)
131 cd07574 nitrilase_Rim1_like Un 30.6 2.4E+02 0.0052 24.4 7.4 65 107-187 162-231 (280)
132 PF10042 DUF2278: Uncharacteri 30.4 76 0.0016 27.3 4.0 36 93-128 114-149 (206)
133 cd07571 ALP_N-acyl_transferase 30.0 2.6E+02 0.0056 24.4 7.5 67 106-193 168-234 (270)
134 PF13472 Lipase_GDSL_2: GDSL-l 29.4 2.6E+02 0.0055 21.3 7.3 76 83-165 62-147 (179)
135 cd00950 DHDPS Dihydrodipicolin 29.4 1.5E+02 0.0033 26.0 6.0 55 99-170 80-135 (284)
136 CHL00200 trpA tryptophan synth 29.1 1.5E+02 0.0031 26.4 5.7 44 102-167 107-150 (263)
137 PF10087 DUF2325: Uncharacteri 28.7 1.1E+02 0.0023 22.5 4.2 22 146-167 60-81 (97)
138 smart00642 Aamy Alpha-amylase 28.6 3E+02 0.0064 22.4 7.2 64 100-167 18-89 (166)
139 cd03298 ABC_ThiQ_thiamine_tran 28.6 2.5E+02 0.0055 23.1 7.0 67 110-191 142-208 (211)
140 cd07992 LPLAT_AAK14816-like Ly 28.5 80 0.0017 26.2 3.8 25 102-126 98-122 (203)
141 TIGR03234 OH-pyruv-isom hydrox 27.8 3.4E+02 0.0074 23.1 7.8 59 98-166 81-141 (254)
142 cd07247 SgaA_N_like N-terminal 27.4 2.3E+02 0.0051 20.2 6.0 41 150-193 72-112 (114)
143 cd03256 ABC_PhnC_transporter A 27.3 2.6E+02 0.0056 23.5 6.9 69 108-191 156-224 (241)
144 cd07265 2_3_CTD_N N-terminal d 27.2 2.4E+02 0.0053 20.6 6.0 44 149-194 74-117 (122)
145 PTZ00261 acyltransferase; Prov 26.9 91 0.002 29.1 4.1 27 100-126 201-227 (355)
146 TIGR00674 dapA dihydrodipicoli 26.8 1.9E+02 0.0041 25.6 6.1 55 99-170 78-133 (285)
147 TIGR01184 ntrCD nitrate transp 26.8 2.5E+02 0.0053 23.8 6.7 70 108-192 126-195 (230)
148 PRK09997 hydroxypyruvate isome 26.6 3.9E+02 0.0085 22.9 8.0 62 95-166 79-142 (258)
149 COG2089 SpsE Sialic acid synth 26.6 2.3E+02 0.005 26.3 6.5 68 98-166 27-108 (347)
150 cd01834 SGNH_hydrolase_like_2 26.4 3.2E+02 0.007 21.5 7.2 77 83-165 62-151 (191)
151 cd01825 SGNH_hydrolase_peri1 S 26.4 3.3E+02 0.0071 21.5 7.6 75 84-165 58-141 (189)
152 COG1225 Bcp Peroxiredoxin [Pos 26.3 1.1E+02 0.0024 25.1 4.1 24 177-200 119-142 (157)
153 PF09587 PGA_cap: Bacterial ca 25.9 2.8E+02 0.006 23.9 6.9 67 100-181 170-237 (250)
154 PRK13634 cbiO cobalt transport 25.9 2.2E+02 0.0047 25.2 6.3 70 108-192 157-226 (290)
155 cd03265 ABC_DrrA DrrA is the A 25.7 2.8E+02 0.0062 23.0 6.8 70 108-192 143-212 (220)
156 COG4604 CeuD ABC-type enteroch 25.3 1.6E+02 0.0034 25.8 4.9 78 148-235 173-250 (252)
157 PF12681 Glyoxalase_2: Glyoxal 25.2 2.5E+02 0.0054 19.7 7.0 41 150-193 67-107 (108)
158 cd07985 LPLAT_GPAT Lysophospho 25.2 2.4E+02 0.0052 24.8 6.2 60 98-163 99-158 (235)
159 cd02072 Glm_B12_BD B12 binding 25.1 2.7E+02 0.0059 22.0 6.0 22 103-124 39-60 (128)
160 TIGR02717 AcCoA-syn-alpha acet 25.1 3.5E+02 0.0076 25.8 7.9 53 100-167 74-127 (447)
161 cd03259 ABC_Carb_Solutes_like 24.9 3.4E+02 0.0073 22.4 7.1 68 109-191 143-210 (213)
162 cd07987 LPLAT_MGAT-like Lysoph 24.8 85 0.0018 26.2 3.4 49 109-166 84-133 (212)
163 cd01122 GP4d_helicase GP4d_hel 24.5 1.8E+02 0.0038 25.1 5.4 65 99-169 124-189 (271)
164 PRK14014 putative acyltransfer 24.4 87 0.0019 28.3 3.5 26 100-125 160-185 (301)
165 cd03257 ABC_NikE_OppD_transpor 24.4 3.2E+02 0.007 22.6 6.9 69 108-191 157-225 (228)
166 cd03261 ABC_Org_Solvent_Resist 24.2 3.4E+02 0.0073 22.8 7.1 71 107-192 147-217 (235)
167 TIGR02315 ABC_phnC phosphonate 23.9 3.7E+02 0.0079 22.7 7.2 68 109-191 158-225 (243)
168 TIGR00068 glyox_I lactoylgluta 23.7 2.1E+02 0.0047 22.1 5.4 44 150-195 97-140 (150)
169 cd00952 CHBPH_aldolase Trans-o 23.7 2.4E+02 0.0051 25.4 6.2 55 99-170 88-144 (309)
170 PF03796 DnaB_C: DnaB-like hel 23.4 2E+02 0.0043 24.8 5.5 64 99-169 113-178 (259)
171 TIGR00262 trpA tryptophan synt 23.3 2.2E+02 0.0048 25.0 5.8 42 102-165 103-144 (256)
172 cd07243 2_3_CTD_C C-terminal d 23.3 2.6E+02 0.0056 21.7 5.7 41 153-195 84-124 (143)
173 PF13342 Toprim_Crpt: C-termin 23.2 1.9E+02 0.0041 19.8 4.2 38 152-191 20-57 (62)
174 PRK12677 xylose isomerase; Pro 22.9 5.9E+02 0.013 23.8 8.9 25 97-121 110-135 (384)
175 cd03301 ABC_MalK_N The N-termi 22.8 3.5E+02 0.0076 22.2 6.8 67 110-191 144-210 (213)
176 PF10566 Glyco_hydro_97: Glyco 22.7 2.8E+02 0.006 24.9 6.3 63 98-166 29-91 (273)
177 cd03465 URO-D_like The URO-D _ 22.6 2.2E+02 0.0047 25.4 5.8 54 104-164 171-224 (330)
178 PRK11153 metN DL-methionine tr 22.5 3.1E+02 0.0067 25.0 6.8 71 107-192 151-221 (343)
179 cd07253 Glo_EDI_BRP_like_2 Thi 22.4 2.3E+02 0.0049 20.3 5.0 43 150-192 79-121 (125)
180 cd03258 ABC_MetN_methionine_tr 22.2 3.6E+02 0.0079 22.6 6.8 68 110-192 154-221 (233)
181 PRK06724 hypothetical protein; 22.2 3.3E+02 0.0071 20.8 6.0 43 148-193 75-120 (128)
182 cd03296 ABC_CysA_sulfate_impor 22.1 3.9E+02 0.0085 22.5 7.1 69 109-192 149-217 (239)
183 cd01125 repA Hexameric Replica 22.1 3.2E+02 0.0068 23.2 6.5 58 103-169 100-157 (239)
184 PRK03170 dihydrodipicolinate s 21.9 3.2E+02 0.0069 24.1 6.6 55 99-170 81-136 (292)
185 PRK08633 2-acyl-glycerophospho 21.8 2.2E+02 0.0047 29.9 6.3 44 109-167 506-549 (1146)
186 PRK11300 livG leucine/isoleuci 21.7 3.4E+02 0.0073 23.1 6.6 70 107-191 164-233 (255)
187 PRK11629 lolD lipoprotein tran 21.4 4.9E+02 0.011 21.8 7.8 72 108-195 157-228 (233)
188 TIGR01277 thiQ thiamine ABC tr 21.4 4.7E+02 0.01 21.6 7.3 67 110-191 142-208 (213)
189 PRK11701 phnK phosphonate C-P 21.3 4E+02 0.0086 22.8 7.0 69 109-192 164-232 (258)
190 PRK15093 antimicrobial peptide 21.3 3.4E+02 0.0074 24.5 6.8 71 107-192 169-239 (330)
191 cd08343 ED_TypeI_classII_C C-t 21.3 3.5E+02 0.0077 20.1 6.1 47 149-197 72-118 (131)
192 PF00701 DHDPS: Dihydrodipicol 21.2 2.7E+02 0.0058 24.5 6.0 55 99-170 81-136 (289)
193 PF13788 DUF4180: Domain of un 21.1 1.8E+02 0.0039 22.6 4.2 44 82-127 5-48 (113)
194 PRK13652 cbiO cobalt transport 21.0 3.8E+02 0.0082 23.4 6.9 71 107-192 148-218 (277)
195 cd07991 LPLAT_LPCAT1-like Lyso 21.0 1.2E+02 0.0027 25.3 3.6 14 113-126 96-109 (211)
196 PRK09473 oppD oligopeptide tra 20.7 3.7E+02 0.008 24.4 6.9 72 107-193 172-243 (330)
197 TIGR00665 DnaB replicative DNA 20.5 2.8E+02 0.006 26.0 6.2 62 100-168 290-352 (434)
198 PRK13111 trpA tryptophan synth 20.5 2.7E+02 0.006 24.5 5.8 43 102-166 105-147 (258)
199 PRK15112 antimicrobial peptide 20.3 3.8E+02 0.0083 23.2 6.7 70 108-192 161-230 (267)
200 PRK10528 multifunctional acyl- 20.3 2.1E+02 0.0046 23.4 4.8 69 84-165 73-146 (191)
201 PRK05748 replicative DNA helic 20.2 3.1E+02 0.0067 26.0 6.5 63 101-169 299-363 (448)
202 TIGR03586 PseI pseudaminic aci 20.0 2.4E+02 0.0051 26.0 5.4 71 97-167 13-96 (327)
No 1
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=4e-32 Score=250.53 Aligned_cols=197 Identities=25% Similarity=0.394 Sum_probs=163.8
Q ss_pred cceeccCCCCccCChhhhhhcCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCceEEEEEecccc--------cCHHHH
Q 025863 28 RSIFLGKAKPVFQSPPLIRTHSSNPNPNPIMASSSKPEQARAPPALPLPTPPVAKFKVGLCQLSVT--------ADKERN 99 (247)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kValvQ~~i~--------~d~~~n 99 (247)
+||+||++...+++|. .+ ...+....|..+..+.++. ++.....+.||||++|+++. +|.++|
T Consensus 18 ~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~rIAlvQ~~~~~~~~~p~~~d~~~n 88 (363)
T cd07587 18 KRILYGEEVKPLELPE---SA-----LDLAKENDFELKGYKFEAA-PEQTRPPRIVRVGLIQNKIVLPTTAPIAEQREAI 88 (363)
T ss_pred HHHHcCCCCccCCCCH---HH-----HHHHHhcCceEEEeecCCC-hhhcCCCceEEEEEEeccccccccCccccCHHHH
Confidence 6899999999999997 44 3456677899999988765 55555566799999999854 489999
Q ss_pred HHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCC-----cchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeec-
Q 025863 100 IAHARRAIEEAAEKGAKLILLPEIWNSPYSHDS-----FPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERS- 173 (247)
Q Consensus 100 ~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~-----~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~- 173 (247)
++++.+++++|+++|+|||||||+|++||.... +...++... +++.++.|+++|++++++|++| +.+++
T Consensus 89 l~ki~~~i~~Aa~~gadLivfPE~~l~g~~~~~~~~~~~~~~ae~~~----~g~~~~~l~~lAk~~~i~Iv~g-i~e~~~ 163 (363)
T cd07587 89 HDRIKKIIEAAAMAGVNIICFQEAWTMPFAFCTREKLPWCEFAESAE----DGPTTKFCQELAKKYNMVIVSP-ILERDE 163 (363)
T ss_pred HHHHHHHHHHHHHcCCCEEEccccccCCccccccccchHHHHhhccC----CChHHHHHHHHHHHcCcEEEEe-eeeeec
Confidence 999999999999999999999999999986432 122333332 3589999999999999999988 66665
Q ss_pred --CCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCC-CeEEEeCCeEEeccccceecccccc
Q 025863 174 --GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET-PTIVDTGLMFLLFYNGLISFSQIIH 246 (247)
Q Consensus 174 --~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~-~~vf~~~~grig~~~~lICyD~~~~ 246 (247)
++++|||+++|+++|+++++|+|+||+++ ..+.|+.+|.+|+. +.+|+++++|+|+ +||||...|
T Consensus 164 ~~~~~~yNta~vi~~~G~ilg~yrK~hL~~~-----~~~~E~~~f~~G~~~~~vf~t~~griG~---~ICyD~~fP 231 (363)
T cd07587 164 EHGDTIWNTAVVISNSGNVLGKSRKNHIPRV-----GDFNESTYYMEGNTGHPVFETQFGKIAV---NICYGRHHP 231 (363)
T ss_pred CCCCcEEEEEEEECCCCCEEeeeeeEecCCC-----CCccceeEEecCCCCCceEEcCCceEEE---EEecccCCc
Confidence 36899999999999999999999999763 25789999999986 7899999999988 999998654
No 2
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=99.97 E-value=1.8e-29 Score=221.72 Aligned_cols=157 Identities=45% Similarity=0.694 Sum_probs=136.1
Q ss_pred EEEEEecccccCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcE
Q 025863 84 KVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKIT 163 (247)
Q Consensus 84 kValvQ~~i~~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~ 163 (247)
|||++|+++.+|.++|++++++++++|+++|+|||||||++++||...+....... ....++..+.++++|++++++
T Consensus 1 kia~~Q~~~~~d~~~n~~~~~~~i~~A~~~g~dlivfPE~~l~g~~~~~~~~~~~~---~~~~~~~~~~l~~~a~~~~i~ 77 (265)
T cd07572 1 RVALIQMTSTADKEANLARAKELIEEAAAQGAKLVVLPECFNYPGGTDAFKLALAE---EEGDGPTLQALSELAKEHGIW 77 (265)
T ss_pred CEEEEEeeCCCCHHHHHHHHHHHHHHHHHCCCCEEECCccccCcCcchhhhhhhhc---cccCChHHHHHHHHHHHCCeE
Confidence 69999999889999999999999999999999999999999999976543332000 011357899999999999999
Q ss_pred EEEeeeeeecC--CeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEEEeCCeEEeccccceec
Q 025863 164 IVGGSIPERSG--DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLFYNGLISF 241 (247)
Q Consensus 164 Iv~Gs~~e~~~--~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf~~~~grig~~~~lICy 241 (247)
+++|+++++++ +++||++++++|+|+++..|+|+||++..+|.+..+.|..+|++|++..+|+++++|+|+ +|||
T Consensus 78 i~~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~~~p~~~~~~e~~~~~~G~~~~~~~~~~~~ig~---~IC~ 154 (265)
T cd07572 78 LVGGSIPERDDDDGKVYNTSLVFDPDGELVARYRKIHLFDVDVPGGISYRESDTLTPGDEVVVVDTPFGKIGL---GICY 154 (265)
T ss_pred EEEeeeccccCCCCcEEEEEEEECCCCeEEeEEeeEEeecccCCCCcccccccccCCCCcceEEecCCceEEE---EEEe
Confidence 99997777766 899999999999999999999999988777876678899999999999999999999988 9999
Q ss_pred ccccc
Q 025863 242 SQIIH 246 (247)
Q Consensus 242 D~~~~ 246 (247)
|...+
T Consensus 155 D~~~p 159 (265)
T cd07572 155 DLRFP 159 (265)
T ss_pred ccCcH
Confidence 97643
No 3
>PLN00202 beta-ureidopropionase
Probab=99.96 E-value=2.3e-29 Score=234.93 Aligned_cols=196 Identities=27% Similarity=0.416 Sum_probs=154.0
Q ss_pred cceecc----CCCCccCChhhhhhcCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCceEEEEEecccc--------cC
Q 025863 28 RSIFLG----KAKPVFQSPPLIRTHSSNPNPNPIMASSSKPEQARAPPALPLPTPPVAKFKVGLCQLSVT--------AD 95 (247)
Q Consensus 28 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kValvQ~~i~--------~d 95 (247)
+||+|| ++...+++|..+-.. +....|......+... .+.....+.||||++|.++. .+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-~~~~~~~~~~rValiQ~~i~~~~~~~~~~~ 107 (405)
T PLN00202 37 SRLLLGLNCGRPVEMIALPEAAKAL--------SKAHDFDLQAFRFTAD-KEQLRAPRVVRVGLIQNSIALPTTAPFADQ 107 (405)
T ss_pred HHHHhCcccCCccccCCCCHHHHHH--------HHhcCceEEEeeecCC-HhHcCCCCeEEEEEEecccccCCCCcccCC
Confidence 679999 999999998754333 1112355555444332 22333355699999999973 48
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCC----CcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeee
Q 025863 96 KERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHD----SFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPE 171 (247)
Q Consensus 96 ~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~----~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e 171 (247)
.++|++++.+++++|++.|+|||||||+|++||... .+.+.++.++ ++..+.++++|++++++|++| +.+
T Consensus 108 ~~~nl~~~~~li~~Aa~~gadLVvfPE~~~~g~~~~~~~~~~~~~ae~~~-----g~~~~~l~~lA~~~~i~Iv~G-~~e 181 (405)
T PLN00202 108 KRAIMDKVKPMIDAAGAAGVNILCLQEAWTMPFAFCTREKRWCEFAEPVD-----GESTKFLQELARKYNMVIVSP-ILE 181 (405)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEecchhccccccccccchHHHHhhhCC-----CHHHHHHHHHHHHCCeEEEEE-eee
Confidence 999999999999999999999999999999998542 1333444432 588999999999999999999 666
Q ss_pred ec---CCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCC-CeEEEeCCeEEeccccceecccccc
Q 025863 172 RS---GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET-PTIVDTGLMFLLFYNGLISFSQIIH 246 (247)
Q Consensus 172 ~~---~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~-~~vf~~~~grig~~~~lICyD~~~~ 246 (247)
++ ++++|||+++|+++|+++++|||+||++++ .+.|+.+|.+|+. ..+|++++||+|+ +||||...|
T Consensus 182 ~~~~~~~~~yNSa~vI~~~G~iig~YrKiHL~~~g-----~~~E~~~f~~G~~g~~vf~t~~gkiGv---~ICYD~~FP 252 (405)
T PLN00202 182 RDVNHGETLWNTAVVIGNNGNIIGKHRKNHIPRVG-----DFNESTYYMEGNTGHPVFETAFGKIAV---NICYGRHHP 252 (405)
T ss_pred eecCCCCcEEEEEEEECCCCcEEEEEecccCCCCC-----CccccceeecCCCCceEEEeCCCeEEE---EEccccccH
Confidence 54 357999999999999999999999997642 4679999999986 6899999999988 999997643
No 4
>PLN02798 nitrilase
Probab=99.96 E-value=4.1e-29 Score=223.12 Aligned_cols=160 Identities=29% Similarity=0.394 Sum_probs=135.8
Q ss_pred CCCceEEEEEecccccCHHHHHHHHHHHHHHHHHCCCeEEEcCCCC-CCCCCCCCcchhhhhhccCCCChHHHHHHHHHH
Q 025863 79 PVAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIW-NSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVA 157 (247)
Q Consensus 79 ~~~~~kValvQ~~i~~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~-l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~A 157 (247)
+.++||||++|+++.+|.++|++++++++++|+++|+|||||||++ ++|+...+...+.+.. .++..+.++++|
T Consensus 7 ~~~~~ria~~Q~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~~g~~~~~~~~~~~~~-----~~~~~~~l~~~A 81 (286)
T PLN02798 7 AGSSVRVAVAQMTSTNDLAANFATCSRLAKEAAAAGAKLLFLPECFSFIGDKDGESLAIAEPL-----DGPIMQRYRSLA 81 (286)
T ss_pred ccCccEEEEEEccCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccccCcCchhhhhhcccC-----CCHHHHHHHHHH
Confidence 3457999999999889999999999999999999999999999984 4677644333333332 257899999999
Q ss_pred HhcCcEEEEeeeeee--cCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEEEeCCeEEecc
Q 025863 158 RLLKITIVGGSIPER--SGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLFY 235 (247)
Q Consensus 158 r~~~i~Iv~Gs~~e~--~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf~~~~grig~~ 235 (247)
+++++++++|+.+++ +++++||++++|+|+|++++.|+|+|||+..+|++..+.|..+|.+|++..+|+++++|+|+
T Consensus 82 ~~~~i~iv~G~~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~p~~~~~~e~~~~~~G~~~~v~~~~~~k~g~- 160 (286)
T PLN02798 82 RESGLWLSLGGFQEKGPDDSHLYNTHVLIDDSGEIRSSYRKIHLFDVDVPGGPVLKESSFTAPGKTIVAVDSPVGRLGL- 160 (286)
T ss_pred HHcCeEEEEeeeEcccCCCCceEEEEEEECCCCCEEEEEEEEEeccccCCCCCcccccccccCCCeeeEEecCCceEEE-
Confidence 999999998866665 46789999999999999999999999988767876666798999999999999999999988
Q ss_pred ccceecccccc
Q 025863 236 NGLISFSQIIH 246 (247)
Q Consensus 236 ~~lICyD~~~~ 246 (247)
+||||..-|
T Consensus 161 --~IC~D~~fp 169 (286)
T PLN02798 161 --TVCYDLRFP 169 (286)
T ss_pred --EEEEcccCh
Confidence 999997643
No 5
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=99.96 E-value=5.2e-29 Score=220.54 Aligned_cols=151 Identities=28% Similarity=0.424 Sum_probs=129.0
Q ss_pred eEEEEEecccccCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcc----hhhhhhccCCCChHHHHHHHHHHH
Q 025863 83 FKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFP----VYAEDIDAGGDASPSTAMLSEVAR 158 (247)
Q Consensus 83 ~kValvQ~~i~~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~----~~~e~~~~~~~~~~~~~~l~~~Ar 158 (247)
||||++|+++.+|.++|++++++++++|+++|+|||||||++++||...+.. ..++..+ .++.++.++++|+
T Consensus 1 ~~ia~~Q~~~~~d~~~Nl~~~~~~i~~A~~~gadlivfPE~~~~gy~~~~~~~~~~~~a~~~~----~~~~~~~l~~~a~ 76 (279)
T TIGR03381 1 VTVAALQMACSDDVETNIARAERLVREAAARGAQIILLPELFEGPYFCKDQDEDYFALAQPVE----GHPAIKRFQALAK 76 (279)
T ss_pred CEEEEEEeeccCCHHHHHHHHHHHHHHHHHCCCCEEEcccccCCCCcCCccccchHhhcCcCC----CChHHHHHHHHHH
Confidence 6899999998899999999999999999999999999999999999654321 1122111 2478999999999
Q ss_pred hcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCC-CCeEEEeCCeEEecccc
Q 025863 159 LLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-TPTIVDTGLMFLLFYNG 237 (247)
Q Consensus 159 ~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~-~~~vf~~~~grig~~~~ 237 (247)
+++++|++| +++++++++||++++|+|+|++++.|+|+||+. ...+.|..+|++|+ .+.+|+++++|+|+
T Consensus 77 ~~~i~i~~g-~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~-----~~~~~E~~~f~~G~~~~~~f~~~~~~ig~--- 147 (279)
T TIGR03381 77 ELGVVIPVS-FFEKAGNAYYNSLAMIDADGSVLGVYRKSHIPD-----GPGYQEKFYFRPGDTGFKVWDTRYGRIGV--- 147 (279)
T ss_pred HcCcEEEEe-eeecCCCceEEeEEEECCCCCEEEEEEeeecCC-----CCCcccceeEccCCCCCceEecCCceEEE---
Confidence 999999999 677788899999999999999999999999954 23457888999998 47999999999988
Q ss_pred ceecccccc
Q 025863 238 LISFSQIIH 246 (247)
Q Consensus 238 lICyD~~~~ 246 (247)
+||||...|
T Consensus 148 ~IC~D~~fp 156 (279)
T TIGR03381 148 GICWDQWFP 156 (279)
T ss_pred EEEcCCcCh
Confidence 999998654
No 6
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.96 E-value=1.3e-28 Score=215.30 Aligned_cols=147 Identities=39% Similarity=0.604 Sum_probs=128.8
Q ss_pred EEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCc
Q 025863 84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKI 162 (247)
Q Consensus 84 kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i 162 (247)
|||++|+++. .|.++|++++.+++++|+++|+|||||||++++||...+....++.. .++..+.++++|+++++
T Consensus 1 rva~~Q~~~~~~d~~~n~~~i~~~i~~A~~~g~dlvv~PE~~l~g~~~~~~~~~~~~~-----~~~~~~~l~~~a~~~~~ 75 (253)
T cd07583 1 KIALIQLDIVWGDPEANIERVESLIEEAAAAGADLIVLPEMWNTGYFLDDLYELADED-----GGETVSFLSELAKKHGV 75 (253)
T ss_pred CEEEEEeecCcCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccCCCCChhhHHhhhccc-----CchHHHHHHHHHHHcCc
Confidence 6999999987 89999999999999999999999999999999999765433222222 35889999999999999
Q ss_pred EEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEEEeCCeEEeccccceecc
Q 025863 163 TIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLFYNGLISFS 242 (247)
Q Consensus 163 ~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf~~~~grig~~~~lICyD 242 (247)
++++|+..+.+++++||++++|+|+|+++..|+|+||+++ +.|..+|.+|+++.+|+++++|+|+ +||||
T Consensus 76 ~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~-------~~e~~~~~~G~~~~v~~~~~~rig~---~IC~D 145 (253)
T cd07583 76 NIVAGSVAEKEGGKLYNTAYVIDPDGELIATYRKIHLFGL-------MGEDKYLTAGDELEVFELDGGKVGL---FICYD 145 (253)
T ss_pred EEEeceEEecCCCcEEEEEEEECCCCcEEEEEeeeeCCCC-------cCchhhccCCCCceEEEeCCeEEEE---EEEec
Confidence 9999976677788999999999999999999999999663 3688899999999999999999988 99999
Q ss_pred ccc
Q 025863 243 QII 245 (247)
Q Consensus 243 ~~~ 245 (247)
..-
T Consensus 146 ~~~ 148 (253)
T cd07583 146 LRF 148 (253)
T ss_pred ccc
Confidence 754
No 7
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=99.96 E-value=4e-28 Score=216.22 Aligned_cols=153 Identities=30% Similarity=0.426 Sum_probs=128.3
Q ss_pred CceEEEEEecccc--------cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCc----chhhhhhccCCCChH
Q 025863 81 AKFKVGLCQLSVT--------ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSF----PVYAEDIDAGGDASP 148 (247)
Q Consensus 81 ~~~kValvQ~~i~--------~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~----~~~~e~~~~~~~~~~ 148 (247)
++||||++|+++. .+.++|++++.+++++|+++|+|||||||++++||...+. .+.++... .++
T Consensus 2 ~~~rva~vQ~~~~~~~~~~~~~~~~~nl~~~~~~i~~A~~~gadlvvfPE~~~~g~~~~~~~~~~~~~~~~~~----~~~ 77 (287)
T cd07568 2 RIVRVGLIQASNVIPTDAPIEKQKEAMIQKHVTMIREAAEAGAQIVCLQEIFYGPYFCAEQDTKWYEFAEEIP----NGP 77 (287)
T ss_pred ceEEEEEEEeecccccccccccCHHHHHHHHHHHHHHHHHcCCcEEEcccccCCCCCccccccchhhhcccCC----CCh
Confidence 4699999999965 7889999999999999999999999999999999864321 11222221 357
Q ss_pred HHHHHHHHHHhcCcEEEEeeeeeec-CCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCC-CCeEEE
Q 025863 149 STAMLSEVARLLKITIVGGSIPERS-GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-TPTIVD 226 (247)
Q Consensus 149 ~~~~l~~~Ar~~~i~Iv~Gs~~e~~-~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~-~~~vf~ 226 (247)
.++.|+++|+++++++++| +.+++ ++++||++++|+|+|++++.|+|+||++++ .+.|..+|.+|+ ...+|+
T Consensus 78 ~~~~l~~~a~~~~i~ii~g-~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~-----~~~e~~~f~~G~~~~~~f~ 151 (287)
T cd07568 78 TTKRFAALAKEYNMVLILP-IYEKEQGGTLYNTAAVIDADGTYLGKYRKNHIPHVG-----GFWEKFYFRPGNLGYPVFD 151 (287)
T ss_pred HHHHHHHHHHHCCEEEEEE-eEEEcCCCcEEEEEEEECCCCcEeeEEeeeecCCCC-----ccceeeeecCCCCCCceEE
Confidence 8999999999999999998 55554 578999999999999999999999996642 467888999998 489999
Q ss_pred eCCeEEeccccceecccccc
Q 025863 227 TGLMFLLFYNGLISFSQIIH 246 (247)
Q Consensus 227 ~~~grig~~~~lICyD~~~~ 246 (247)
++++|+|+ +||||...|
T Consensus 152 ~~~~~iG~---~ICyD~~fp 168 (287)
T cd07568 152 TAFGKIGV---YICYDRHFP 168 (287)
T ss_pred cCCceEEE---EEEecccCc
Confidence 99999988 999998754
No 8
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=99.96 E-value=5.1e-28 Score=213.07 Aligned_cols=146 Identities=22% Similarity=0.316 Sum_probs=122.0
Q ss_pred CCceEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHH
Q 025863 80 VAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR 158 (247)
Q Consensus 80 ~~~~kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar 158 (247)
|++||||++|+++. +|.++|++++.++++++ .|+|||||||++++||...+. .+... .++..+.|+++|+
T Consensus 1 m~~mkia~~Q~~~~~~d~~~Nl~~~~~~i~~a--~gadLivfPE~~~~Gy~~~~~---~~~~~----~~~~~~~l~~~A~ 71 (256)
T PRK10438 1 MSGLKITLLQQPLVWMDGPANLRHFDRQLEGI--TGRDVIVLPEMFTTGFAMEAA---ASSLP----QDDVVAWMTAKAQ 71 (256)
T ss_pred CCCCEEEEEEecCccCCHHHHHHHHHHHHHhc--cCCCEEEeCCcccCCCcccch---hhccc----cchHHHHHHHHHH
Confidence 34699999999975 89999999999999986 699999999999999976432 12221 2468899999999
Q ss_pred hcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEEEeCCeEEeccccc
Q 025863 159 LLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLFYNGL 238 (247)
Q Consensus 159 ~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf~~~~grig~~~~l 238 (247)
++++.+ +|+..+++++++|||+++|+|+|. +..|+|+|||++ +.|..+|++|++..+|+++++|+|+ +
T Consensus 72 ~~~~~i-~g~~~~~~~~~~~Nsa~vi~~~G~-~~~y~K~hL~~~-------~~E~~~f~~G~~~~v~~~~~~~iG~---~ 139 (256)
T PRK10438 72 QTNALI-AGSVALQTESGAVNRFLLVEPGGT-VHFYDKRHLFRM-------ADEHLHYKAGNARVIVEWRGWRILP---L 139 (256)
T ss_pred HcCeEE-EEEEEEecCCCeEEEEEEEcCCCC-EEEEeeeecCCC-------CCccceecCCCCceEEEECCEEEEE---E
Confidence 999854 565656667789999999999997 579999999763 3688999999999999999999988 9
Q ss_pred eecccccc
Q 025863 239 ISFSQIIH 246 (247)
Q Consensus 239 ICyD~~~~ 246 (247)
||||...|
T Consensus 140 ICyD~~fP 147 (256)
T PRK10438 140 VCYDLRFP 147 (256)
T ss_pred EEeecCCH
Confidence 99998754
No 9
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=99.95 E-value=1.1e-27 Score=209.15 Aligned_cols=146 Identities=30% Similarity=0.454 Sum_probs=127.6
Q ss_pred EEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcch-hhhhhccCCCChHHHHHHHHHHHhcC
Q 025863 84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPV-YAEDIDAGGDASPSTAMLSEVARLLK 161 (247)
Q Consensus 84 kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~-~~e~~~~~~~~~~~~~~l~~~Ar~~~ 161 (247)
|||++|+++. +|.++|++++.+++++|+++|+|||||||++++||...+... ..+. ..++.++.++++|++++
T Consensus 1 kva~~Q~~~~~~d~~~n~~~i~~~i~~a~~~ga~lvv~PE~~l~g~~~~~~~~~~~~~-----~~~~~~~~l~~~a~~~~ 75 (254)
T cd07576 1 RLALYQGPARDGDVAANLARLDEAAARAAAAGADLLVFPELFLTGYNIGDAVARLAEP-----ADGPALQALRAIARRHG 75 (254)
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEccCccccCCCCcchhhhhhcc-----cCChHHHHHHHHHHHcC
Confidence 6999999985 899999999999999999999999999999999997654321 1111 13578999999999999
Q ss_pred cEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEEEeCCeEEeccccceec
Q 025863 162 ITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLFYNGLISF 241 (247)
Q Consensus 162 i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf~~~~grig~~~~lICy 241 (247)
+++++| +++++++++||++++|+++|+++..|+|+||++ +.|..+|.+|++..+|+++++|+|+ +|||
T Consensus 76 ~~ii~G-~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~--------~~E~~~~~~G~~~~v~~~~~~kig~---~IC~ 143 (254)
T cd07576 76 IAIVVG-YPERAGGAVYNAAVLIDEDGTVLANYRKTHLFG--------DSERAAFTPGDRFPVVELRGLRVGL---LICY 143 (254)
T ss_pred CEEEEe-ccccCCCceEEEEEEECCCCCEeeEEEeeccCC--------cchhhhccCCCCceEEEECCeEEEE---EEee
Confidence 999999 778888899999999999999999999999965 2688899999999999999999988 9999
Q ss_pred ccccc
Q 025863 242 SQIIH 246 (247)
Q Consensus 242 D~~~~ 246 (247)
|..-|
T Consensus 144 D~~fp 148 (254)
T cd07576 144 DVEFP 148 (254)
T ss_pred cCCCC
Confidence 97643
No 10
>PLN02747 N-carbamolyputrescine amidase
Probab=99.95 E-value=1.5e-27 Score=213.82 Aligned_cols=154 Identities=25% Similarity=0.342 Sum_probs=129.5
Q ss_pred CCceEEEEEecccccCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCc----chhhhhhccCCCChHHHHHHHH
Q 025863 80 VAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSF----PVYAEDIDAGGDASPSTAMLSE 155 (247)
Q Consensus 80 ~~~~kValvQ~~i~~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~----~~~~e~~~~~~~~~~~~~~l~~ 155 (247)
.+++|||++|+++.+|.++|++++.+++++|++.|+|||||||++++||..... ....+..+ .++.++.+++
T Consensus 4 ~~~~~va~~Q~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~----~~~~~~~l~~ 79 (296)
T PLN02747 4 GRKVVVAALQFACSDDRAANVDKAERLVREAHAKGANIILIQELFEGYYFCQAQREDFFQRAKPYE----GHPTIARMQK 79 (296)
T ss_pred CcceEEEEEEecCCCCHHHHHHHHHHHHHHHHHCCCcEEEcccccCCCCCccccccchhhhcccCC----CChHHHHHHH
Confidence 357999999999889999999999999999999999999999999999865321 11112111 2478899999
Q ss_pred HHHhcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCC-CeEEEeCCeEEec
Q 025863 156 VARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET-PTIVDTGLMFLLF 234 (247)
Q Consensus 156 ~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~-~~vf~~~~grig~ 234 (247)
+|++++++|++| .++++++++||++++|+|+|+++++|+|.||+. ...+.|..+|++|+. ..+|+++++|+|+
T Consensus 80 ~a~~~~i~i~~g-~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~-----~~~~~e~~~~~~G~~~~~~~~~~~~rig~ 153 (296)
T PLN02747 80 LAKELGVVIPVS-FFEEANNAHYNSIAIIDADGTDLGLYRKSHIPD-----GPGYQEKFYFNPGDTGFKVFDTKFAKIGV 153 (296)
T ss_pred HHHHcCeEEEee-eeecCCCceEEEEEEECCCCCCcceEEEEecCC-----CCCccceeeecCCCCCCeeEEcCCccEEE
Confidence 999999999998 667778899999999999999999999999943 234568888999974 7999999999988
Q ss_pred cccceecccccc
Q 025863 235 YNGLISFSQIIH 246 (247)
Q Consensus 235 ~~~lICyD~~~~ 246 (247)
+||||...|
T Consensus 154 ---~IC~D~~fp 162 (296)
T PLN02747 154 ---AICWDQWFP 162 (296)
T ss_pred ---EEEccccch
Confidence 999998754
No 11
>PLN02504 nitrilase
Probab=99.95 E-value=2.9e-27 Score=217.05 Aligned_cols=156 Identities=26% Similarity=0.368 Sum_probs=128.7
Q ss_pred CCCCceEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCC-cc------------hhhhh-hcc
Q 025863 78 PPVAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDS-FP------------VYAED-IDA 142 (247)
Q Consensus 78 ~~~~~~kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~-~~------------~~~e~-~~~ 142 (247)
+.+++||||++|+++. .|.++|++++++++++|++.|+|||||||++++||.... +. ..... ..+
T Consensus 20 ~~~~~~kiAlvQ~~~~~~d~~~nl~~~~~li~eAa~~gadLIVfPE~~ltGyp~~~~~~~~~~~~~~~~~~~~~~~~~~a 99 (346)
T PLN02504 20 ASSSTVRATVVQASTVFYDTPATLDKAERLIAEAAAYGSQLVVFPEAFIGGYPRGSTFGLAIGDRSPKGREDFRKYHASA 99 (346)
T ss_pred ccCCceEEEEEEcCcccCCHHHHHHHHHHHHHHHHHCCCeEEEeCccccccCCcchhhccccccccchhHHHHHHHHHhc
Confidence 3456799999999975 899999999999999999999999999999999996421 11 11000 011
Q ss_pred CCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCC--
Q 025863 143 GGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-- 220 (247)
Q Consensus 143 ~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~-- 220 (247)
...+++.++.|+++|++++++|++| ..+++++++||++++|+++|+++.+|+|+|++. .|+.+|.+|.
T Consensus 100 ~~~~g~~i~~l~~~A~~~~i~iv~G-~~e~~~~~~yNsa~~i~~~G~i~~~yrK~~p~~---------~E~~~f~~G~g~ 169 (346)
T PLN02504 100 IDVPGPEVDRLAAMAGKYKVYLVMG-VIERDGYTLYCTVLFFDPQGQYLGKHRKLMPTA---------LERLIWGFGDGS 169 (346)
T ss_pred ccCCCHHHHHHHHHHHHcCCEEEEe-eeecCCCceEEEEEEECCCCCEEeEEeeccCCc---------ccceeeecCCCC
Confidence 1234688999999999999999999 567788899999999999999999999999843 5888899887
Q ss_pred CCeEEEeCCeEEeccccceecccccc
Q 025863 221 TPTIVDTGLMFLLFYNGLISFSQIIH 246 (247)
Q Consensus 221 ~~~vf~~~~grig~~~~lICyD~~~~ 246 (247)
++.+|+++++|+|+ +||||...|
T Consensus 170 ~~~vf~~~~griG~---lICyD~~fP 192 (346)
T PLN02504 170 TIPVYDTPIGKIGA---VICWENRMP 192 (346)
T ss_pred CCceEEcCCceEEE---EEeccchhH
Confidence 57899999999988 999997654
No 12
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.95 E-value=2.3e-27 Score=211.57 Aligned_cols=142 Identities=30% Similarity=0.468 Sum_probs=123.7
Q ss_pred EEEEEecccccCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcE
Q 025863 84 KVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKIT 163 (247)
Q Consensus 84 kValvQ~~i~~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~ 163 (247)
|||++|+++..|+++|++++++++++|+++|+|||||||++++||.... ..++.. .++.++.++++|++++++
T Consensus 1 ria~~Q~~~~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~ltG~~~~~--~~~~~~-----~~~~~~~l~~lA~~~~i~ 73 (279)
T cd07579 1 RIAVAQFAPTPDIAGNLATIDRLAAEAKATGAELVVFPELALTGLDDPA--SEAESD-----TGPAVSALRRLARRLRLY 73 (279)
T ss_pred CEEEEeccCccCHHHHHHHHHHHHHHHHHCCCCEEEeCCccccCCCChH--HhcccC-----CCHHHHHHHHHHHHcCeE
Confidence 6999999987899999999999999999999999999999999996431 122221 357899999999999999
Q ss_pred EEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEEEeCCeEEeccccceeccc
Q 025863 164 IVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLFYNGLISFSQ 243 (247)
Q Consensus 164 Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf~~~~grig~~~~lICyD~ 243 (247)
+++| ..+++++++||++++|+++| ++..|+|+||++ .|..+|.+|++..+|+++++|+|+ +||||.
T Consensus 74 iv~G-~~~~~~~~~yNs~~vi~~~G-~i~~Y~K~hL~~---------~E~~~f~~G~~~~v~~~~~~kiG~---~ICyD~ 139 (279)
T cd07579 74 LVAG-FAEADGDGLYNSAVLVGPEG-LVGTYRKTHLIE---------PERSWATPGDTWPVYDLPLGRVGL---LIGHDA 139 (279)
T ss_pred EEEe-ceEccCCcEEEEEEEEeCCe-eEEEEecccCCC---------cchhhccCCCCCeeEEcCceeEEE---EEeccc
Confidence 9999 56777889999999999999 679999999964 488899999999999999999988 999997
Q ss_pred ccc
Q 025863 244 IIH 246 (247)
Q Consensus 244 ~~~ 246 (247)
.-|
T Consensus 140 ~fP 142 (279)
T cd07579 140 LFP 142 (279)
T ss_pred cCc
Confidence 643
No 13
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=99.95 E-value=5.6e-27 Score=208.22 Aligned_cols=154 Identities=28% Similarity=0.401 Sum_probs=127.6
Q ss_pred eEEEEEecccccCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcch-hhhhhccCCCChHHHHHHHHHHHhcC
Q 025863 83 FKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPV-YAEDIDAGGDASPSTAMLSEVARLLK 161 (247)
Q Consensus 83 ~kValvQ~~i~~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~-~~e~~~~~~~~~~~~~~l~~~Ar~~~ 161 (247)
||||++|+++.+|.++|++++.+++++|++.|+|||||||++++||...+... ..+... ....++.++.++++|++++
T Consensus 1 ~~ia~~Q~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~-~~~~~~~~~~l~~la~~~~ 79 (284)
T cd07573 1 VTVALVQMACSEDPEANLAKAEELVREAAAQGAQIVCLQELFETPYFCQEEDEDYFDLAE-PPIPGPTTARFQALAKELG 79 (284)
T ss_pred CEEEEEEeeccCCHHHHHHHHHHHHHHHHHCCCcEEEccccccCCCCcccccchhHHhcc-ccCCCHHHHHHHHHHHHCC
Confidence 69999999999999999999999999999999999999999999997654211 111100 0123578899999999999
Q ss_pred cEEEEeeeeeec-CCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCC-CCeEEEeCCeEEeccccce
Q 025863 162 ITIVGGSIPERS-GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-TPTIVDTGLMFLLFYNGLI 239 (247)
Q Consensus 162 i~Iv~Gs~~e~~-~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~-~~~vf~~~~grig~~~~lI 239 (247)
+++++|+ .+++ ++++||++++|+|+|+++..|+|.||+. ...+.|..+|.+|+ +..+|+++++++|+ +|
T Consensus 80 i~iv~g~-~~~~~~~~~yNs~~v~~~~G~i~~~y~K~~l~~-----~~~~~e~~~~~~G~~~~~~~~~~~~~ig~---~I 150 (284)
T cd07573 80 VVIPVSL-FEKRGNGLYYNSAVVIDADGSLLGVYRKMHIPD-----DPGYYEKFYFTPGDTGFKVFDTRYGRIGV---LI 150 (284)
T ss_pred EEEEecc-eeeCCCCcEEEEEEEECCCCCEEeEEeeeccCC-----CCcccccceecCCCCCCceEecCCceEEE---EE
Confidence 9999995 4554 5689999999999999999999999843 22457888999999 79999999999988 99
Q ss_pred ecccccc
Q 025863 240 SFSQIIH 246 (247)
Q Consensus 240 CyD~~~~ 246 (247)
|||...|
T Consensus 151 C~D~~fp 157 (284)
T cd07573 151 CWDQWFP 157 (284)
T ss_pred eccccch
Confidence 9998654
No 14
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=99.95 E-value=5.1e-27 Score=211.15 Aligned_cols=157 Identities=22% Similarity=0.292 Sum_probs=127.6
Q ss_pred ceEEEEEecccc-c--CHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcc-------hhhhhhccCCCChHHHH
Q 025863 82 KFKVGLCQLSVT-A--DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFP-------VYAEDIDAGGDASPSTA 151 (247)
Q Consensus 82 ~~kValvQ~~i~-~--d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~-------~~~e~~~~~~~~~~~~~ 151 (247)
+||||++|+++. . +.++|++++.+++++|++.|+|||||||++++||...... .+.+. ...++.++
T Consensus 3 ~~rva~~Q~~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 78 (302)
T cd07569 3 QVILAAAQMGPIARAETRESVVARLIALLEEAASRGAQLVVFPELALTTFFPRWYFPDEAELDSFFET----EMPNPETQ 78 (302)
T ss_pred eEEEEEEeeccccccCCHHHHHHHHHHHHHHHHhCCCcEEEcccccccCcccccccCChHHhhhhhhh----cCCChhHH
Confidence 599999999864 3 8899999999999999999999999999999998643211 11111 12357889
Q ss_pred HHHHHHHhcCcEEEEeeeeee-cCC---eeEEEEEEEccCCcEEEEEeccccCCCC--CCCC-cccccccccccCC-CCe
Q 025863 152 MLSEVARLLKITIVGGSIPER-SGD---RLYNTCCVFGSDGKLIAKHRKIHLFDID--IPGK-ITFIESKSLTAGE-TPT 223 (247)
Q Consensus 152 ~l~~~Ar~~~i~Iv~Gs~~e~-~~~---~~yNsa~li~p~G~il~~Y~K~hL~~~~--vP~~-~~~~E~~~f~~G~-~~~ 223 (247)
.++++|+++++++++| ++++ .++ ++||++++|+++|++++.|+|+||++++ +|.. ..+.|..+|.+|+ ++.
T Consensus 79 ~l~~~a~~~~i~iv~G-~~~~~~~~~~~~~yNsa~~i~~~G~i~~~y~K~~l~~~~e~~p~~~~~~~e~~~~~~G~~~~~ 157 (302)
T cd07569 79 PLFDRAKELGIGFYLG-YAELTEDGGVKRRFNTSILVDKSGKIVGKYRKVHLPGHKEPEPYRPFQHLEKRYFEPGDLGFP 157 (302)
T ss_pred HHHHHHHHhCeEEEEe-ceeecCCCCcceeeeEEEEECCCCCEeeeeeEEecCCCcccCcccccccccccccCCCCCCCc
Confidence 9999999999999999 6664 344 8999999999999999999999997754 2211 1345888999999 889
Q ss_pred EEEeCCeEEeccccceecccccc
Q 025863 224 IVDTGLMFLLFYNGLISFSQIIH 246 (247)
Q Consensus 224 vf~~~~grig~~~~lICyD~~~~ 246 (247)
+|+++++|+|+ +||||..-|
T Consensus 158 v~~~~~~rig~---~IC~D~~fp 177 (302)
T cd07569 158 VFRVPGGIMGM---CICNDRRWP 177 (302)
T ss_pred eEecCCceEEE---EEeeccccc
Confidence 99999999988 999998654
No 15
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=99.95 E-value=3.9e-27 Score=211.51 Aligned_cols=149 Identities=33% Similarity=0.418 Sum_probs=125.1
Q ss_pred eEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCc-----------chhhhhhccCCCChHHH
Q 025863 83 FKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSF-----------PVYAEDIDAGGDASPST 150 (247)
Q Consensus 83 ~kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~-----------~~~~e~~~~~~~~~~~~ 150 (247)
||||++|+++. +|.++|++++++++++|+++|+|||||||++++||...++ ....+.. ....++.+
T Consensus 1 ~kia~~Q~~~~~~d~~~nl~~~~~~i~~A~~~ga~lvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 78 (297)
T cd07564 1 VKVAAVQAAPVFLDLAATVEKACRLIEEAAANGAQLVVFPEAFIPGYPYWIWFGAPAEGRELFARYYENS--VEVDGPEL 78 (297)
T ss_pred CEEEEEecCcccCCHHHHHHHHHHHHHHHHHCCCCEEEeccccccCCCchhhcCCcccchHHHHHHHHhC--cCCCCHHH
Confidence 68999999864 8999999999999999999999999999999999975321 1111111 11235889
Q ss_pred HHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCC--CCeEEEeC
Q 025863 151 AMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE--TPTIVDTG 228 (247)
Q Consensus 151 ~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~--~~~vf~~~ 228 (247)
+.|+++|++++++|++| ..+++++++||++++|+|+|+++++|+|+||+. .|..+|.+|+ +..+|+++
T Consensus 79 ~~l~~~a~~~~i~iv~G-~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~---------~E~~~~~~g~~~~~~v~~~~ 148 (297)
T cd07564 79 ERLAEAARENGIYVVLG-VSERDGGTLYNTQLLIDPDGELLGKHRKLKPTH---------AERLVWGQGDGSGLRVVDTP 148 (297)
T ss_pred HHHHHHHHHcCcEEEEe-eEeccCCceEEEEEEEcCCCCEeeeeeccCCCc---------hhhhhcccCCCCCceEEecC
Confidence 99999999999999999 567778899999999999999999999999843 6888899886 57899999
Q ss_pred CeEEeccccceecccccc
Q 025863 229 LMFLLFYNGLISFSQIIH 246 (247)
Q Consensus 229 ~grig~~~~lICyD~~~~ 246 (247)
++|+|+ +||||..-|
T Consensus 149 ~~kig~---~ICyD~~fP 163 (297)
T cd07564 149 IGRLGA---LICWENYMP 163 (297)
T ss_pred CceEEE---EEEhhcCCH
Confidence 999988 999998643
No 16
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=99.95 E-value=2.6e-27 Score=197.26 Aligned_cols=152 Identities=34% Similarity=0.509 Sum_probs=122.2
Q ss_pred EEEEEeccc---ccCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCC-----CCcchhhhhhccCCCChHHHHHHHH
Q 025863 84 KVGLCQLSV---TADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSH-----DSFPVYAEDIDAGGDASPSTAMLSE 155 (247)
Q Consensus 84 kValvQ~~i---~~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~-----~~~~~~~e~~~~~~~~~~~~~~l~~ 155 (247)
|||++|+++ ..|.++|++++.+++++|+++++|||||||++++||.. ....+..+.... ..++.++.+.+
T Consensus 1 ~VA~~Q~~~~~~~~~~~~n~~~i~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~ 78 (186)
T PF00795_consen 1 RVALVQLNIDQSWGDPEENLKKILSLIEEAARQGADLVVFPEMALPGYPNPGWCEDDFADLDEFAEP--LDGPYLERLAE 78 (186)
T ss_dssp EEEEEEB-B-SSTTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTCS-GGGSGHSSHHHHHHHHBH--STSHHHHHHHH
T ss_pred CEEEEECCccCccCCHHHHHHHHHHHHHHHHHCCCCEEEcCcchhcccccccccccccchhhhhccc--cccHHHHHHHH
Confidence 799999995 48999999999999999999999999999999999932 222222111111 01589999999
Q ss_pred HHHhcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccc-cccccccC-CCCeEEEeC-----
Q 025863 156 VARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFI-ESKSLTAG-ETPTIVDTG----- 228 (247)
Q Consensus 156 ~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~-E~~~f~~G-~~~~vf~~~----- 228 (247)
+|+++++++++| +++.+++++||++++|+++|+++++|+|+||++++ .+. |+.+|.+| ....+|+++
T Consensus 79 ~a~~~~~~i~~G-~~~~~~~~~~N~~~~~~~~g~~~~~y~K~~lvpf~-----~~~P~~~~~~~g~~~~~~~~~~~~~~~ 152 (186)
T PF00795_consen 79 LAKENGITIVAG-IPERDDGGLYNSAVVIDPDGEILGRYRKIHLVPFG-----EYIPERRYFSPGGDPFPVFETPVFDFG 152 (186)
T ss_dssp HHHHHTSEEEEE-EEEEETTEEEEEEEEEETTSEEEEEEEGSSTCSTT-----TTTTHHHHSBEESSESEEEEETETEET
T ss_pred HHHhcCCccccc-ccccccccccceeEEEEeeecccccccceeeeccc-----cccccceeeeeccceeeeeecceeeec
Confidence 999999999999 78889999999999999999999999999996543 233 77888887 446677765
Q ss_pred CeEEeccccceecccccc
Q 025863 229 LMFLLFYNGLISFSQIIH 246 (247)
Q Consensus 229 ~grig~~~~lICyD~~~~ 246 (247)
++|+|+ +||||...+
T Consensus 153 g~~ig~---~ICyd~~fp 167 (186)
T PF00795_consen 153 GGRIGV---LICYDLRFP 167 (186)
T ss_dssp TEEEEE---EEGGGGGSH
T ss_pred cceEEE---EEEcccCCh
Confidence 699988 999997653
No 17
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.95 E-value=5.6e-27 Score=205.50 Aligned_cols=148 Identities=30% Similarity=0.446 Sum_probs=124.4
Q ss_pred EEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcch-hhhhhccCCCChHHHHHHHHHHHhcC
Q 025863 84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPV-YAEDIDAGGDASPSTAMLSEVARLLK 161 (247)
Q Consensus 84 kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~-~~e~~~~~~~~~~~~~~l~~~Ar~~~ 161 (247)
|||++|+++. +|.++|++++++++++|++.|+|||||||++++||..++... ..+... ...++.++.++++|++++
T Consensus 1 ria~~q~~~~~~d~~~n~~~~~~~i~~a~~~ga~liv~PE~~l~g~~~~~~~~~~~~~~~--~~~~~~~~~l~~~a~~~~ 78 (258)
T cd07584 1 KVALIQMDSVLGDVKANLKKAAELCKEAAAEGADLICFPELATTGYRPDLLGPKLWELSE--PIDGPTVRLFSELAKELG 78 (258)
T ss_pred CEEEEEecCccCCHHHHHHHHHHHHHHHHHcCCCEEEcccccccCCCccccchhhHhhcc--CCCCcHHHHHHHHHHHcC
Confidence 6899999865 899999999999999999999999999999999997654321 111101 113578899999999999
Q ss_pred cEEEEeeeeeecC--CeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEEEeCCeEEeccccce
Q 025863 162 ITIVGGSIPERSG--DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLFYNGLI 239 (247)
Q Consensus 162 i~Iv~Gs~~e~~~--~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf~~~~grig~~~~lI 239 (247)
+++++| .++.++ +++||++++|+|+|+++..|+|+||++ .|..+|.+|++..+|+++++|+|+ +|
T Consensus 79 i~i~~G-~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~---------~e~~~~~~G~~~~~~~~~~~~~g~---~I 145 (258)
T cd07584 79 VYIVCG-FVEKGGVPGKVYNSAVVIDPEGESLGVYRKIHLWG---------LEKQYFREGEQYPVFDTPFGKIGV---MI 145 (258)
T ss_pred eEEEEe-ehcccCCCCceEEEEEEECCCCCEEeEEEeecCCc---------hhhhhccCCCCCeeEEcCCceEEE---EE
Confidence 999999 455543 689999999999999999999999964 477789999999999999999988 99
Q ss_pred ecccccc
Q 025863 240 SFSQIIH 246 (247)
Q Consensus 240 CyD~~~~ 246 (247)
|||...|
T Consensus 146 C~D~~fp 152 (258)
T cd07584 146 CYDMGFP 152 (258)
T ss_pred EcCccCh
Confidence 9998654
No 18
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=99.95 E-value=5.8e-27 Score=205.77 Aligned_cols=150 Identities=27% Similarity=0.387 Sum_probs=122.2
Q ss_pred EEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCc
Q 025863 84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKI 162 (247)
Q Consensus 84 kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i 162 (247)
|||++|+++. +|.++|++++.+++++|+++|+|||||||++++||...+.......... ..+.++.+.+.++++++
T Consensus 1 ria~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~~~~~~~~~~~~---~~~~~~~la~~~~~~~i 77 (261)
T cd07570 1 RIALAQLNPTVGDLEGNAEKILEAIREAKAQGADLVVFPELSLTGYPPEDLLLRPDFLEA---AEEALEELAAATADLDI 77 (261)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHHcCCCEEEccchhccCCChHHHhhCHHHHHH---HHHHHHHHHHhcccCCc
Confidence 6999999975 8999999999999999999999999999999999975432211111110 12455566666666799
Q ss_pred EEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEEEeCCeEEeccccceecc
Q 025863 163 TIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLFYNGLISFS 242 (247)
Q Consensus 163 ~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf~~~~grig~~~~lICyD 242 (247)
++++| .++++++++||++++| ++|+++..|+|+||++++ .+.|..+|.+|+...+|+++++|+|+ +||||
T Consensus 78 ~ii~G-~~~~~~~~~yNs~~~i-~~G~i~~~y~K~~l~~~~-----~~~e~~~~~~G~~~~~~~~~~~~ig~---~IC~D 147 (261)
T cd07570 78 AVVVG-LPLRHDGKLYNAAAVL-QNGKILGVVPKQLLPNYG-----VFDEKRYFTPGDKPDVLFFKGLRIGV---EICED 147 (261)
T ss_pred EEEEe-ceEecCCCEEEEEEEE-eCCEEEEEEECccCcCCc-----cccccccCccCCCCCeEEECCEEEEE---Eeecc
Confidence 99999 5677788999999999 699999999999996542 45788999999999999999999988 99999
Q ss_pred cccc
Q 025863 243 QIIH 246 (247)
Q Consensus 243 ~~~~ 246 (247)
..-|
T Consensus 148 ~~fp 151 (261)
T cd07570 148 LWVP 151 (261)
T ss_pred cCCC
Confidence 8643
No 19
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.95 E-value=1.1e-26 Score=203.18 Aligned_cols=148 Identities=35% Similarity=0.547 Sum_probs=126.5
Q ss_pred EEEEecccccCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCc--chhhhhhccCCCChHHHHHHHHHHHhcCc
Q 025863 85 VGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSF--PVYAEDIDAGGDASPSTAMLSEVARLLKI 162 (247)
Q Consensus 85 ValvQ~~i~~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~--~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i 162 (247)
||++|++..+|.++|++++++++++|+++|+|||||||++++||..++. ....+.+ .+++++.++++|+++++
T Consensus 1 ia~~Q~~~~~d~~~n~~~~~~~i~~a~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~-----~~~~~~~l~~~a~~~~i 75 (255)
T cd07581 1 VALAQFASSGDKEENLEKVRRLLAEAAAAGADLVVFPEYTMARFGDGLDDYARVAEPL-----DGPFVSALARLARELGI 75 (255)
T ss_pred CEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCCEEECcchhcCCCCcchhhHHhhhccC-----CCHHHHHHHHHHHHcCe
Confidence 6899999889999999999999999999999999999999999976542 2222322 35789999999999999
Q ss_pred EEEEeeeeeecC-CeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCC--CeEEEeCCeEEeccccce
Q 025863 163 TIVGGSIPERSG-DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET--PTIVDTGLMFLLFYNGLI 239 (247)
Q Consensus 163 ~Iv~Gs~~e~~~-~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~--~~vf~~~~grig~~~~lI 239 (247)
++++| .+++++ +++||++++|+++|+++.+|+|+||++. ..+.|..+|++|++ ..+++++++|+|+ +|
T Consensus 76 ~iv~G-~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~L~~~-----~~~~e~~~~~~G~~~~~~~~~~~~~kig~---~I 146 (255)
T cd07581 76 TVVAG-MFEPAGDGRVYNTLVVVGPDGEIIAVYRKIHLYDA-----FGFRESDTVAPGDELPPVVFVVGGVKVGL---AT 146 (255)
T ss_pred EEEEE-eeeeCCCCcEEEeEEEECCCCcEEEEEeeeccCCC-----CCcCcccccCCCCCCCceEEecCCceEEE---EE
Confidence 99999 566654 4899999999999999999999999652 24678889999998 7889999999988 99
Q ss_pred ecccccc
Q 025863 240 SFSQIIH 246 (247)
Q Consensus 240 CyD~~~~ 246 (247)
|||...|
T Consensus 147 C~D~~~p 153 (255)
T cd07581 147 CYDLRFP 153 (255)
T ss_pred EecccCH
Confidence 9998643
No 20
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=99.94 E-value=1.5e-26 Score=202.66 Aligned_cols=144 Identities=28% Similarity=0.420 Sum_probs=124.3
Q ss_pred eEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcC
Q 025863 83 FKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLK 161 (247)
Q Consensus 83 ~kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~ 161 (247)
||||++|+++. +|++.|++++++++++|++ |+|||||||++++||..++. ..++.. .++.++.++++|++++
T Consensus 1 mkia~~Q~~~~~~d~~~N~~~~~~~i~~a~~-gadlvvfPE~~l~g~~~~~~-~~~~~~-----~~~~~~~l~~la~~~~ 73 (252)
T cd07575 1 LKIALIQTDLVWEDPEANLAHFEEKIEQLKE-KTDLIVLPEMFTTGFSMNAE-ALAEPM-----NGPTLQWMKAQAKKKG 73 (252)
T ss_pred CEEEEEEeecCcCCHHHHHHHHHHHHHHhhc-CCCEEEeCCcCcCCCCccHH-Hhhccc-----CChHHHHHHHHHHHCC
Confidence 69999999986 8999999999999999987 99999999999999975432 223322 3588999999999999
Q ss_pred cEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEEEeCCeEEeccccceec
Q 025863 162 ITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLFYNGLISF 241 (247)
Q Consensus 162 i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf~~~~grig~~~~lICy 241 (247)
+.+++| +++++++++||++++++++|++ ..|+|.||+++ ..|..+|++|++..+|+++++|+|+ +|||
T Consensus 74 i~i~~~-~~~~~~~~~yNs~~~i~~~G~i-~~y~K~~l~~~-------~~e~~~~~~G~~~~~~~~~~~~ig~---~IC~ 141 (252)
T cd07575 74 AAITGS-LIIKEGGKYYNRLYFVTPDGEV-YHYDKRHLFRM-------AGEHKVYTAGNERVIVEYKGWKILL---QVCY 141 (252)
T ss_pred eEEEEE-EEEccCCceEEEEEEECCCCCE-EEEeeeecCCC-------CCccceecCCCCceEEEECCEEEEE---EEEe
Confidence 988876 7777888999999999999986 49999999763 2688899999999999999999988 9999
Q ss_pred cccc
Q 025863 242 SQII 245 (247)
Q Consensus 242 D~~~ 245 (247)
|..-
T Consensus 142 D~~~ 145 (252)
T cd07575 142 DLRF 145 (252)
T ss_pred ccCC
Confidence 9654
No 21
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.94 E-value=1.7e-26 Score=202.99 Aligned_cols=147 Identities=31% Similarity=0.439 Sum_probs=122.7
Q ss_pred eEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcC
Q 025863 83 FKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLK 161 (247)
Q Consensus 83 ~kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~ 161 (247)
+|||++|++.. +|.++|++++.+++++|++.|+|||||||++++||...+.......... ..++..+.++++|++++
T Consensus 1 ~ria~~Q~~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~gy~~~~~~~~~~~~~~--~~~~~~~~l~~~a~~~~ 78 (258)
T cd07578 1 YKAAAIQFEPEMGEKERNIERLLALCEEAARAGARLIVTPEMATTGYCWYDRAEIAPFVEP--IPGPTTARFAELAREHD 78 (258)
T ss_pred CeEEEEEecCccccHHHHHHHHHHHHHHHHhCCCCEEEcccccccCCCcCCHHHhhhhccc--CCCHHHHHHHHHHHHcC
Confidence 58999999975 8999999999999999999999999999999999976543222211111 12478899999999999
Q ss_pred cEEEEeeeeeec--CCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCC-CCeEEEeCCeEEeccccc
Q 025863 162 ITIVGGSIPERS--GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-TPTIVDTGLMFLLFYNGL 238 (247)
Q Consensus 162 i~Iv~Gs~~e~~--~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~-~~~vf~~~~grig~~~~l 238 (247)
+++++| .+++. ++++||++++|+++| ++..|+|+||+. .|..+|.+|+ ...+|+++++|+|+ +
T Consensus 79 i~ii~G-~~~~~~~~~~~yNs~~vi~~~g-~~~~y~K~h~~~---------~e~~~~~~g~~~~~v~~~~~~rig~---~ 144 (258)
T cd07578 79 CYIVVG-LPEVDSRSGIYYNSAVLIGPSG-VIGRHRKTHPYI---------SEPKWAADGDLGHQVFDTEIGRIAL---L 144 (258)
T ss_pred cEEEEe-cceecCCCCCeeEEEEEECCCC-cEEeEeeecCCc---------ccccccCCCCCCceEEECCCccEEE---E
Confidence 999999 55554 478999999999998 789999999853 5778899998 57899999999988 9
Q ss_pred eeccccc
Q 025863 239 ISFSQII 245 (247)
Q Consensus 239 ICyD~~~ 245 (247)
||||...
T Consensus 145 IC~D~~f 151 (258)
T cd07578 145 ICMDIHF 151 (258)
T ss_pred EeeCCCc
Confidence 9999753
No 22
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.94 E-value=1.7e-26 Score=202.72 Aligned_cols=145 Identities=33% Similarity=0.479 Sum_probs=125.3
Q ss_pred EEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCc
Q 025863 84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKI 162 (247)
Q Consensus 84 kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i 162 (247)
|||++|+++. +|+++|++++++++++|++.|+|||||||++++||...+....... ...++.++.++++|+++++
T Consensus 1 ~ia~~Q~~~~~~~~~~n~~~i~~~i~~a~~~gadliv~PE~~l~g~~~~~~~~~~~~----~~~~~~~~~l~~~a~~~~~ 76 (261)
T cd07585 1 RIALVQFEARVGDKARNLAVIARWTRKAAAQGAELVCFPEMCITGYTHVRALSREAE----VPDGPSTQALSDLARRYGL 76 (261)
T ss_pred CEEEEEeecCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccccccccCCcccchhcc----cCCChHHHHHHHHHHHcCc
Confidence 6999999986 8999999999999999999999999999999999986543222111 1235789999999999999
Q ss_pred EEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEEEeCCeEEeccccceecc
Q 025863 163 TIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLFYNGLISFS 242 (247)
Q Consensus 163 ~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf~~~~grig~~~~lICyD 242 (247)
++++| +++++++++||++++|+++|. +..|+|.||++ .|..+|++|++..+|+++++|+|+ +||||
T Consensus 77 ~i~~G-~~~~~~~~~yNs~~vi~~~g~-i~~y~K~~l~~---------~E~~~~~~G~~~~v~~~~~~rig~---~IC~D 142 (261)
T cd07585 77 TILAG-LIEKAGDRPYNTYLVCLPDGL-VHRYRKLHLFR---------REHPYIAAGDEYPVFATPGVRFGI---LICYD 142 (261)
T ss_pred EEEEe-ccccCCCceeEEEEEECCCCc-EeEEeeecCCc---------cccceEcCCCCCceEEcCCceEEE---EEEcC
Confidence 99999 567778899999999999997 68999999954 578899999999999999999988 99999
Q ss_pred cccc
Q 025863 243 QIIH 246 (247)
Q Consensus 243 ~~~~ 246 (247)
...|
T Consensus 143 ~~~p 146 (261)
T cd07585 143 NHFP 146 (261)
T ss_pred CcCc
Confidence 8654
No 23
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.94 E-value=1.6e-26 Score=204.05 Aligned_cols=148 Identities=32% Similarity=0.440 Sum_probs=124.9
Q ss_pred EEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCc
Q 025863 84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKI 162 (247)
Q Consensus 84 kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i 162 (247)
|||++|+++. ++.++|++++.+++++|++.|+|||||||++++||...+.....+... ....++.++.++++|+++++
T Consensus 1 ria~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~ 79 (268)
T cd07580 1 RVACVQFDPRVGDLDANLARSIELIREAADAGANLVVLPELANTGYVFESRDEAFALAE-EVPDGASTRAWAELAAELGL 79 (268)
T ss_pred CEEEEEccCccCcHHHHHHHHHHHHHHHHHcCCCEEEcCCcccccCCCCCHHHHHHhhc-cCCCCchHHHHHHHHHHcCc
Confidence 6999999987 899999999999999999999999999999999997655322211110 01124688999999999999
Q ss_pred EEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCC-CeEEEeCCeEEeccccceec
Q 025863 163 TIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET-PTIVDTGLMFLLFYNGLISF 241 (247)
Q Consensus 163 ~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~-~~vf~~~~grig~~~~lICy 241 (247)
++++| +++++++++||++++++++|. +..|+|+||++ .|..+|++|++ ..+|+++++|+|+ +|||
T Consensus 80 ~i~~G-~~~~~~~~~yNs~~vi~~~g~-~~~y~K~~l~~---------~e~~~f~~G~~~~~v~~~~~~~ig~---~IC~ 145 (268)
T cd07580 80 YIVAG-FAERDGDRLYNSAVLVGPDGV-IGTYRKAHLWN---------EEKLLFEPGDLGLPVFDTPFGRIGV---AICY 145 (268)
T ss_pred EEEee-cccccCCceEEEEEEECCCCc-EEEEEEecCCc---------hhcceecCCCCCCceEEcCCCcEEE---EEEC
Confidence 99999 677778899999999999995 78999999964 58889999998 8999999999988 9999
Q ss_pred ccccc
Q 025863 242 SQIIH 246 (247)
Q Consensus 242 D~~~~ 246 (247)
|...|
T Consensus 146 D~~fp 150 (268)
T cd07580 146 DGWFP 150 (268)
T ss_pred cccch
Confidence 97643
No 24
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=99.94 E-value=2.7e-26 Score=206.69 Aligned_cols=150 Identities=27% Similarity=0.336 Sum_probs=121.1
Q ss_pred eEEEEEecccc-cCH-------HHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcch--hhhhhc-----------
Q 025863 83 FKVGLCQLSVT-ADK-------ERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPV--YAEDID----------- 141 (247)
Q Consensus 83 ~kValvQ~~i~-~d~-------~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~--~~e~~~----------- 141 (247)
.|+|++|..+. .+. ++|++++++++++|++.|+|||||||++++||...++.. .++.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~A~~~gadLIVfPE~~ltGy~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (299)
T cd07567 1 YIAAVVEHHPILSPDPDALQIMEKNLDIYEEIIKSAAKQGADIIVFPEDGLTGFIFTRFVIYPFLEDVPDPEVNWNPCLD 80 (299)
T ss_pred CEEEEEEEEeeccCCccHHHHHHHHHHHHHHHHHHHHHcCCCEEEccccccCCCCCCccccCchhccccccccccccccc
Confidence 47899999863 444 899999999999999999999999999999998655322 111110
Q ss_pred -cCCCChHHHHHHHHHHHhcCcEEEEeeeeeec-----------C-CeeEEEEEEEccCCcEEEEEeccccCCCCCCCCc
Q 025863 142 -AGGDASPSTAMLSEVARLLKITIVGGSIPERS-----------G-DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKI 208 (247)
Q Consensus 142 -~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~-----------~-~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~ 208 (247)
....+++.++.|+++|++++++|++| +.++. + +++|||+++|+++|+++.+|||+|||
T Consensus 81 ~~~~~~~~~~~~l~~lAr~~~i~Iv~G-~~e~~~~~~~~~~~~~~~~~~yNsa~vi~~~G~iv~~YrK~hLf-------- 151 (299)
T cd07567 81 PDRFDYTEVLQRLSCAARENSIYVVAN-LGEKQPCDSSDPHCPPDGRYQYNTNVVFDRDGTLIARYRKYNLF-------- 151 (299)
T ss_pred ccccCchHHHHHHHHHHHHhCeEEEec-cccccccccccccCCCCCCceeEEEEEEcCCCCccceEeecccc--------
Confidence 00123588999999999999999999 55542 2 36999999999999999999999995
Q ss_pred ccccccccccCC-CCeEEEeCCe-EEeccccceecccccc
Q 025863 209 TFIESKSLTAGE-TPTIVDTGLM-FLLFYNGLISFSQIIH 246 (247)
Q Consensus 209 ~~~E~~~f~~G~-~~~vf~~~~g-rig~~~~lICyD~~~~ 246 (247)
.|..+|.+|+ ++.+|++++| |+|+ +||||...|
T Consensus 152 --~E~~~~~~G~~~~~vf~t~~g~kiGv---lICyD~~FP 186 (299)
T cd07567 152 --GEPGFDVPPEPEIVTFDTDFGVTFGI---FTCFDILFK 186 (299)
T ss_pred --ccccccCCCCCCceEEECCCCCEEEE---EEEeeccch
Confidence 4788899996 5899999986 9988 999997654
No 25
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.94 E-value=2.2e-26 Score=204.15 Aligned_cols=151 Identities=27% Similarity=0.426 Sum_probs=123.3
Q ss_pred eEEEEEecccc--cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCC---CCCcc---hhhhhhccCCCChHHHHHHH
Q 025863 83 FKVGLCQLSVT--ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYS---HDSFP---VYAEDIDAGGDASPSTAMLS 154 (247)
Q Consensus 83 ~kValvQ~~i~--~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~---~~~~~---~~~e~~~~~~~~~~~~~~l~ 154 (247)
||||++|+++. .|.++|++++++++++|+++|+|||||||++++||. ..+.. ....... ...++.++.++
T Consensus 1 m~va~~Q~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ 78 (280)
T cd07574 1 VRVAAAQYPLRRYASFEEFAAKVEYWVAEAAGYGADLLVFPEYFTMELLSLLPEAIDGLDEAIRALA--ALTPDYVALFS 78 (280)
T ss_pred CeeEEEEccCcCCCCHHHHHHHHHHHHHHHHHcCCCEEECchHhHHHHHHhCCcccccHHHHHHHHH--HHHHHHHHHHH
Confidence 69999999975 799999999999999999999999999999998742 22111 1111111 01357899999
Q ss_pred HHHHhcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEEEeCCeEEec
Q 025863 155 EVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLF 234 (247)
Q Consensus 155 ~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf~~~~grig~ 234 (247)
++|++++++|++|++++++++++||++++++|+|.+ .+|+|+||++++ .|..+|.+|++..+|+++++|+|+
T Consensus 79 ~~a~~~~i~iv~G~~~~~~~~~~yNs~~~i~~~G~v-~~y~K~~l~~~e-------~~~~~~~~G~~~~v~~~~~~~ig~ 150 (280)
T cd07574 79 ELARKYGINIIAGSMPVREDGRLYNRAYLFGPDGTI-GHQDKLHMTPFE-------REEWGISGGDKLKVFDTDLGKIGI 150 (280)
T ss_pred HHHHHhCCEEEecceEEcCCCCeEEEEEEECCCCCE-EEEeeeccCchh-------hhcccccCCCCceEEecCCccEEE
Confidence 999999999999976677788999999999999987 999999997632 344568999999999999999988
Q ss_pred cccceecccccc
Q 025863 235 YNGLISFSQIIH 246 (247)
Q Consensus 235 ~~~lICyD~~~~ 246 (247)
+||||...|
T Consensus 151 ---~IC~D~~fp 159 (280)
T cd07574 151 ---LICYDSEFP 159 (280)
T ss_pred ---EEecccccH
Confidence 999997643
No 26
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=99.94 E-value=6.4e-26 Score=196.92 Aligned_cols=148 Identities=39% Similarity=0.557 Sum_probs=126.8
Q ss_pred EEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcE
Q 025863 85 VGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKIT 163 (247)
Q Consensus 85 ValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~ 163 (247)
||++|+++. ++.++|++++++++++|+++|+|||||||++++||...+......... .......+.++++|++++++
T Consensus 1 ia~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~~~~~--~~~~~~~~~l~~~a~~~~i~ 78 (253)
T cd07197 1 IAAVQLAPKIGDVEANLAKALRLIKEAAEQGADLIVLPELFLTGYSFESAKEDLDLAE--ELDGPTLEALAELAKELGIY 78 (253)
T ss_pred CEEEEccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccccCCccccchhhhhhcc--cCCchHHHHHHHHHHHhCeE
Confidence 689999987 999999999999999999999999999999999997654322110010 11357899999999999999
Q ss_pred EEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEEEeCCeEEeccccceeccc
Q 025863 164 IVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLFYNGLISFSQ 243 (247)
Q Consensus 164 Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf~~~~grig~~~~lICyD~ 243 (247)
+++|+ .+++++++||++++++++|+++..|+|.||++ +.|..+|++|++..+|+++++|+|+ +||||.
T Consensus 79 ii~G~-~~~~~~~~~N~~~~i~~~G~i~~~~~K~~l~~--------~~E~~~~~~g~~~~~f~~~~~~ig~---~IC~d~ 146 (253)
T cd07197 79 IVAGI-AEKDGDKLYNTAVVIDPDGEIIGKYRKIHLFD--------FGERRYFSPGDEFPVFDTPGGKIGL---LICYDL 146 (253)
T ss_pred EEeee-EEccCCceEEEEEEECCCCeEEEEEEEeecCC--------CcccceecCCCCCceEEcCCceEEE---EEEecC
Confidence 99994 57778899999999999999999999999954 4788899999999999999999988 999998
Q ss_pred ccc
Q 025863 244 IIH 246 (247)
Q Consensus 244 ~~~ 246 (247)
..+
T Consensus 147 ~~~ 149 (253)
T cd07197 147 RFP 149 (253)
T ss_pred CCc
Confidence 754
No 27
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.94 E-value=5.1e-26 Score=199.87 Aligned_cols=142 Identities=35% Similarity=0.556 Sum_probs=121.7
Q ss_pred EEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcc---hhhhhhccCCCChHHHHHHHHHHHh
Q 025863 84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFP---VYAEDIDAGGDASPSTAMLSEVARL 159 (247)
Q Consensus 84 kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~---~~~e~~~~~~~~~~~~~~l~~~Ar~ 159 (247)
|||++|+++. +|.++|++++.+++++|. +|||||||++++||...... ..++.. ..++.++.++++|++
T Consensus 1 kia~~Q~~~~~~d~~~N~~~~~~~i~~a~---adlvvfPE~~l~gy~~~~~~~~~~~~~~~----~~~~~~~~l~~~a~~ 73 (259)
T cd07577 1 KVGYVQFNPKFGEVEKNLKKVESLIKGVE---ADLIVLPELFNTGYAFTSKEEVASLAESI----PDGPTTRFLQELARE 73 (259)
T ss_pred CEEEEEccCccCCHHHHHHHHHHHHHHhC---CCEEEcccccccCCCcCCHHHHHHhhccc----CCChHHHHHHHHHHH
Confidence 6999999976 899999999999999883 99999999999999764322 122221 135789999999999
Q ss_pred cCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCC-CCeEEEeCCeEEeccccc
Q 025863 160 LKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-TPTIVDTGLMFLLFYNGL 238 (247)
Q Consensus 160 ~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~-~~~vf~~~~grig~~~~l 238 (247)
+++++++| +++++++++||++++|+++| ++..|+|+||++ .|..+|.+|+ +..+|+++++|+|+ +
T Consensus 74 ~~i~ii~G-~~~~~~~~~yNs~~vi~~~G-i~~~y~K~~l~~---------~e~~~~~~G~~~~~~~~~~~~~ig~---~ 139 (259)
T cd07577 74 TGAYIVAG-LPERDGDKFYNSAVVVGPEG-YIGIYRKTHLFY---------EEKLFFEPGDTGFRVFDIGDIRIGV---M 139 (259)
T ss_pred hCcEEEec-ceeccCCceEEEEEEECCCc-cEeeEeeccCCh---------hhhccccCCCCCCceEEeCCcEEEE---E
Confidence 99999999 67778889999999999999 999999999964 5788999999 68999999999988 9
Q ss_pred eecccccc
Q 025863 239 ISFSQIIH 246 (247)
Q Consensus 239 ICyD~~~~ 246 (247)
||||...|
T Consensus 140 IC~D~~fp 147 (259)
T cd07577 140 ICFDWYFP 147 (259)
T ss_pred EEcCcccc
Confidence 99998754
No 28
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=99.94 E-value=1.1e-25 Score=199.49 Aligned_cols=150 Identities=30% Similarity=0.511 Sum_probs=127.1
Q ss_pred ceEEEEEeccc-ccCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCC--cchhhhhhccCCCChHHHHHHHHHHH
Q 025863 82 KFKVGLCQLSV-TADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDS--FPVYAEDIDAGGDASPSTAMLSEVAR 158 (247)
Q Consensus 82 ~~kValvQ~~i-~~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~--~~~~~e~~~~~~~~~~~~~~l~~~Ar 158 (247)
.||||++|+++ ..|.++|++++.+++++|+++|||||||||++++||...+ +....... ..++.++.++++++
T Consensus 2 ~~rvA~~Q~~~~~~d~~~N~~~~~~~i~~a~~~ga~LvvfPEl~~tgy~~~~~~~~~~~~~~----~~~~~~~~l~~~a~ 77 (274)
T COG0388 2 MMRVAAAQMAPKAGDPAENLARILRLIREAAARGADLVVFPELFLTGYPCEDDLFLEEAAAE----AGEETLEFLAALAE 77 (274)
T ss_pred ceEEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCEEECCcccccCCCcccHHHHHhhhhc----cCChHHHHHHHHHH
Confidence 58999999997 5999999999999999999999999999999999998875 11111211 13689999999999
Q ss_pred hcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCC-eEEEeCCeEEecccc
Q 025863 159 LLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETP-TIVDTGLMFLLFYNG 237 (247)
Q Consensus 159 ~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~-~vf~~~~grig~~~~ 237 (247)
+.++++++|+.+++. ..||++++++++|++++.|+|+|||+. .+.|+.+|.+|++. .+|+++++|+|+
T Consensus 78 ~~~~~ivg~~~~~~~--~~~~~~~~i~~~G~ii~~y~K~hl~~~------~~~e~~~~~~G~~~~~v~~~~~~kig~--- 146 (274)
T COG0388 78 EGGVIIVGGPLPERE--KLYNNAALIDPDGEILGKYRKLHLFDA------FYEERRFFTPGDEGVVVFETDGGKIGL--- 146 (274)
T ss_pred hCCeEEEEeeeeccc--cceeeEEEEcCCCcEEeEEeeecCCCC------ccchhhhccCCCccceeEEeCCceEEE---
Confidence 888888888655544 899999999999999999999999762 35799999999987 599999999988
Q ss_pred ceecccccc
Q 025863 238 LISFSQIIH 246 (247)
Q Consensus 238 lICyD~~~~ 246 (247)
+||||..-|
T Consensus 147 ~IC~D~~fP 155 (274)
T COG0388 147 LICYDLRFP 155 (274)
T ss_pred EEEeeccCH
Confidence 999998643
No 29
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.93 E-value=3.2e-26 Score=202.73 Aligned_cols=170 Identities=38% Similarity=0.490 Sum_probs=154.2
Q ss_pred CCCCCCCCCceEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCC-CCcchhhhhhccCCCChHHH
Q 025863 73 LPLPTPPVAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSH-DSFPVYAEDIDAGGDASPST 150 (247)
Q Consensus 73 ~~~~~~~~~~~kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~-~~~~~~~e~~~~~~~~~~~~ 150 (247)
.+.......++++|++|.... .+..+|++.++..+++|++.|++||||||.++.||.+ +.+..++|.+.+....++..
T Consensus 4 ~~~~~~~~~~~~~a~vq~~~~l~~~~~Ni~~~~~~i~~aa~~g~~iIv~PE~~~~gy~~~~sf~py~E~i~~~~~~~ps~ 83 (298)
T KOG0806|consen 4 VYEHAVILPNATEALVSLEEALLLMNENIDILEKAVKEAAKQGAKIIVFPEDGLYGYNFTESFYPYLEDIPDPGCRDPSR 83 (298)
T ss_pred ccccCCcccccceeeeecccchhhhhhhHHHHHHHHHHHHhcCCeEEEChhhccccccccccccchhhhCCCcccCChhH
Confidence 345555677899999999987 5899999999999999999999999999999999999 88888888887533357999
Q ss_pred HHHHHHHHhcCcEEEEeeeeeec-CCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEEEeCC
Q 025863 151 AMLSEVARLLKITIVGGSIPERS-GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGL 229 (247)
Q Consensus 151 ~~l~~~Ar~~~i~Iv~Gs~~e~~-~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf~~~~ 229 (247)
+.++++|+++++++++|++++.. +++.||++.+++++|+.++.|||.|||+.++|+...+.|...|.+|..++++++..
T Consensus 84 ~~ls~va~~~~~~~i~g~i~~~~~~~k~yns~~~~~~~g~l~~~yrk~hlFD~d~~~~~ry~e~~~~~~g~~f~~~~~~~ 163 (298)
T KOG0806|consen 84 QGLSEVAERLSCYIIGGSIEEEALGDKLYNSCADSSCPGDGLAKYRKNHLFDTDGPGVIRYRESHLLSPGDQFTVVDTSY 163 (298)
T ss_pred HHhHHHHhhceEEEecCcchhhcccccccCcccccCCCcchhheeeeeEEeccCCccceeeeeeeccCCCcCCCcccCCC
Confidence 99999999999999999887766 68999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeccccceeccccc
Q 025863 230 MFLLFYNGLISFSQII 245 (247)
Q Consensus 230 grig~~~~lICyD~~~ 245 (247)
||+|+ .||||-.-
T Consensus 164 gkfGi---~IC~Di~F 176 (298)
T KOG0806|consen 164 GKFGI---FICFDIRF 176 (298)
T ss_pred CceEE---EEEecccc
Confidence 99988 99999753
No 30
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=99.93 E-value=2.7e-25 Score=199.38 Aligned_cols=145 Identities=21% Similarity=0.304 Sum_probs=119.5
Q ss_pred eEEEEEeccc-----ccCHHHHHHHHHHHHHHHHH--CCCeEEEcCCCCCCCCCCCC--cchhhhhhccCCCChHHHHHH
Q 025863 83 FKVGLCQLSV-----TADKERNIAHARRAIEEAAE--KGAKLILLPEIWNSPYSHDS--FPVYAEDIDAGGDASPSTAML 153 (247)
Q Consensus 83 ~kValvQ~~i-----~~d~~~n~~~i~~~i~~Aa~--~gadLVVfPE~~l~g~~~~~--~~~~~e~~~~~~~~~~~~~~l 153 (247)
++||++|+++ .+|.++|++++.+++++|++ .|+|||||||++++||..+. ..+.++.. .++.++.+
T Consensus 1 ~~Ia~~Q~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~gadLvvfPE~~ltGy~~~~~~~~~~a~~~-----~~~~~~~l 75 (291)
T cd07565 1 VGVAVVQYKVPVLHTKEEVLENAERIADMVEGTKRGLPGMDLIVFPEYSTQGLMYDKWTMDETACTV-----PGPETDIF 75 (291)
T ss_pred CeEEEEecccccccccccHHHHHHHHHHHHHHHHhhCCCCeEEEeCCcccccCCCCcchhhhhccCC-----CChhHHHH
Confidence 4799999997 37999999999999999986 59999999999999997532 22233322 35889999
Q ss_pred HHHHHhcCcEEEEeeeeeecC---CeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCC-CeEEEeC-
Q 025863 154 SEVARLLKITIVGGSIPERSG---DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET-PTIVDTG- 228 (247)
Q Consensus 154 ~~~Ar~~~i~Iv~Gs~~e~~~---~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~-~~vf~~~- 228 (247)
+++|+++++++++| +.++++ +++||++++|+|+|+++.+|+|+|||. | ...|.+|++ ..+|++.
T Consensus 76 ~~lA~~~~i~i~~g-~~e~~~~~~~~~yNsa~~i~~~G~i~~~YrK~hl~~---~-------~e~~~~G~~~~~v~~~~~ 144 (291)
T cd07565 76 AEACKEAKVWGVFS-IMERNPDHGKNPYNTAIIIDDQGEIVLKYRKLHPWV---P-------IEPWYPGDLGTPVCEGPK 144 (291)
T ss_pred HHHHHHCCeEEEEE-eeeecCCCCCceEEEEEEECCCCcEEEEEEecccCC---C-------cccccCCCCCceeeECCC
Confidence 99999999999998 566653 689999999999999999999999953 1 224789997 8899986
Q ss_pred CeEEeccccceecccccc
Q 025863 229 LMFLLFYNGLISFSQIIH 246 (247)
Q Consensus 229 ~grig~~~~lICyD~~~~ 246 (247)
++|+|+ +||||...|
T Consensus 145 g~riG~---~ICyD~~fP 159 (291)
T cd07565 145 GSKIAL---IICHDGMYP 159 (291)
T ss_pred CCEEEE---EEEcCCCCc
Confidence 559988 999998654
No 31
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.93 E-value=2.1e-25 Score=196.67 Aligned_cols=146 Identities=27% Similarity=0.355 Sum_probs=120.4
Q ss_pred EEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcc-hhhhhhccCCCChHHHHHHHHHHHhcC
Q 025863 84 KVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFP-VYAEDIDAGGDASPSTAMLSEVARLLK 161 (247)
Q Consensus 84 kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~-~~~e~~~~~~~~~~~~~~l~~~Ar~~~ 161 (247)
|||++|++.. +|.++|++++++++++|+++|+|||||||++++||...+.. +.+.. ..++.++.|++.++ +
T Consensus 1 kia~~q~~~~~~~~~~n~~~~~~~i~~A~~~ga~liv~PE~~~~g~~~~~~~~~~~~~-----~~~~~~~~l~~~a~--~ 73 (269)
T cd07586 1 RVAIAQIDPVLGDVEENLEKHLEIIETARERGADLVVFPELSLTGYNLGDLVYEVAMH-----ADDPRLQALAEASG--G 73 (269)
T ss_pred CEEEEecCCccCcHHHHHHHHHHHHHHHHHcCCCEEEecchhccCCCchhhhhhhhcc-----cchHHHHHHHHHcC--C
Confidence 6999999976 89999999999999999999999999999999999865421 11111 12466777777763 7
Q ss_pred cEEEEeeeeeec-CCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEEEeCCeEEecccccee
Q 025863 162 ITIVGGSIPERS-GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLFYNGLIS 240 (247)
Q Consensus 162 i~Iv~Gs~~e~~-~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf~~~~grig~~~~lIC 240 (247)
+++++|+ ++.. ++++||++++| ++|+++++|+|+||+. ...+.|..+|++|++..+|+++++|+|+ +||
T Consensus 74 ~~ii~G~-~~~~~~~~~yNt~~vi-~~G~i~~~y~K~~lp~-----~~~~~e~~~~~~G~~~~vf~~~~~~ig~---~IC 143 (269)
T cd07586 74 ICVVFGF-VEEGRDGRFYNSAAYL-EDGRVVHVHRKVYLPT-----YGLFEEGRYFAPGSHLRAFDTRFGRAGV---LIC 143 (269)
T ss_pred CEEEEeC-eEEcCCCcEEEEEEEe-cCCEEEEEEEeEeCCC-----CCccceeeeecCCCcceEEEeCCeEEEE---EEE
Confidence 9999995 5555 58999999999 8999999999999843 2345788899999999999999999988 999
Q ss_pred cccccc
Q 025863 241 FSQIIH 246 (247)
Q Consensus 241 yD~~~~ 246 (247)
||...+
T Consensus 144 ~D~~fp 149 (269)
T cd07586 144 EDAWHP 149 (269)
T ss_pred eccCCc
Confidence 998754
No 32
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=99.93 E-value=3.1e-25 Score=199.52 Aligned_cols=150 Identities=23% Similarity=0.316 Sum_probs=116.4
Q ss_pred EEEEEecccc-cCHHHHHHHHHHHHHHHHH----CCCeEEEcCCCCCCCCCCCCcc---hhhhhhccCCCChHHHHHHHH
Q 025863 84 KVGLCQLSVT-ADKERNIAHARRAIEEAAE----KGAKLILLPEIWNSPYSHDSFP---VYAEDIDAGGDASPSTAMLSE 155 (247)
Q Consensus 84 kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~----~gadLVVfPE~~l~g~~~~~~~---~~~e~~~~~~~~~~~~~~l~~ 155 (247)
|||++|+++. +|.++|++++++++++|++ .++|||||||++++||...+.. .+++... .++..+.+++
T Consensus 1 rIA~vQ~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~gadLIVfPEl~ltGY~~~~~~~~~~~ae~~~----~g~~~~~l~~ 76 (295)
T cd07566 1 RIACLQLNPQIGQVEENLSRAWELLDKTKKRAKLKKPDILVLPELALTGYNFHSLEHIKPYLEPTT----SGPSFEWARE 76 (295)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhhccCCCCcEEEcCCCCcccCCcccHHHHHHHHHhcC----CCHHHHHHHH
Confidence 6999999976 8999999999999999988 8999999999999999765432 2222221 3588999999
Q ss_pred HHHhcCcEEEEeeeeeecC---CeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccc-cccc------cCCCCe--
Q 025863 156 VARLLKITIVGGSIPERSG---DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIES-KSLT------AGETPT-- 223 (247)
Q Consensus 156 ~Ar~~~i~Iv~Gs~~e~~~---~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~-~~f~------~G~~~~-- 223 (247)
+|++++++|++| ++++.+ +++|||+++|+|+|+++++|+|+|||+++.+ ..+.|. .+|. +|++..
T Consensus 77 lAk~~~i~Iv~G-~~e~~~~~~~~~yNta~vi~~~G~ii~~YrK~HL~~~~~~--~~~~e~~~~~~~~~~~~~G~~~~~~ 153 (295)
T cd07566 77 VAKKFNCHVVIG-YPEKVDESSPKLYNSALVVDPEGEVVFNYRKSFLYYTDEE--WGCEENPGGFQTFPLPFAKDDDFDG 153 (295)
T ss_pred HHHhcCCEEEEe-eeEecCCCCCceEEEEEEEcCCCeEEEEEeccccCCCCcc--cccCCCCCccccccccccccccccc
Confidence 999999999999 556543 4899999999999999999999999875321 011222 1222 777643
Q ss_pred EEEeCCeEEeccccceeccc
Q 025863 224 IVDTGLMFLLFYNGLISFSQ 243 (247)
Q Consensus 224 vf~~~~grig~~~~lICyD~ 243 (247)
++.+.++|+|+ +||||.
T Consensus 154 ~~~~~~~kiG~---~ICyDl 170 (295)
T cd07566 154 GSVDVTLKTSI---GICMDL 170 (295)
T ss_pred cccCCcceeEE---EEEecC
Confidence 23445789988 999997
No 33
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=99.93 E-value=1.9e-25 Score=198.10 Aligned_cols=145 Identities=20% Similarity=0.295 Sum_probs=122.0
Q ss_pred eEEEEEecccc-c------CHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHH
Q 025863 83 FKVGLCQLSVT-A------DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSE 155 (247)
Q Consensus 83 ~kValvQ~~i~-~------d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~ 155 (247)
+|||++|+++. . |.++|++++.+++++|+++|+|||||||++++||.. . .++.++.+++
T Consensus 1 ~~ia~~Q~~~~~~~~~~~~d~~~nl~~~~~~i~~a~~~ga~lvvfPE~~l~g~~~---------~-----~~~~~~~l~~ 66 (270)
T cd07571 1 LRVALVQGNIPQDEKWDPEQRQATLDRYLDLTRELADEKPDLVVWPETALPFDLQ---------R-----DPDALARLAR 66 (270)
T ss_pred CeEEEEeCCCCcccccCHHHHHHHHHHHHHHHhhcccCCCCEEEecCCcCCcccc---------c-----CHHHHHHHHH
Confidence 58999999975 3 789999999999999999999999999999999851 1 2488999999
Q ss_pred HHHhcCcEEEEeeeeeecC--CeeEEEEEEEccCCcEEEEEeccccCCCC--CCCCcc--------cccccccccCCCCe
Q 025863 156 VARLLKITIVGGSIPERSG--DRLYNTCCVFGSDGKLIAKHRKIHLFDID--IPGKIT--------FIESKSLTAGETPT 223 (247)
Q Consensus 156 ~Ar~~~i~Iv~Gs~~e~~~--~~~yNsa~li~p~G~il~~Y~K~hL~~~~--vP~~~~--------~~E~~~f~~G~~~~ 223 (247)
+|+++++++++| ..++++ +++||++++|+|+|+++.+|+|+||++++ .|.... ..|..+|.+|++..
T Consensus 67 ~ak~~~i~ii~G-~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~L~p~~e~~p~~~~~~~~~~~~~~e~~~~~~G~~~~ 145 (270)
T cd07571 67 AARAVGAPLLTG-APRREPGGGRYYNSALLLDPGGGILGRYDKHHLVPFGEYVPLRDLLRFLGLLFDLPMGDFSPGTGPQ 145 (270)
T ss_pred HHHhcCCeEEEe-eeeeccCCCceEEEEEEECCCCCCcCcEeeeeccCCCCCcCcHHHHHHHHHhcccccCCCCCCCCCC
Confidence 999999999999 455554 48999999999999999999999997653 111100 14778899999999
Q ss_pred EEEeCC-eEEeccccceeccccc
Q 025863 224 IVDTGL-MFLLFYNGLISFSQII 245 (247)
Q Consensus 224 vf~~~~-grig~~~~lICyD~~~ 245 (247)
+|++++ +|+|+ +||||..-
T Consensus 146 vf~~~~~~r~g~---~IC~D~~f 165 (270)
T cd07571 146 PLLLGGGVRVGP---LICYESIF 165 (270)
T ss_pred ccccCCCceEEE---EEEeeeeC
Confidence 999999 99988 99999754
No 34
>PRK13981 NAD synthetase; Provisional
Probab=99.92 E-value=1.1e-24 Score=210.50 Aligned_cols=148 Identities=27% Similarity=0.364 Sum_probs=124.6
Q ss_pred eEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHh--
Q 025863 83 FKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARL-- 159 (247)
Q Consensus 83 ~kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~-- 159 (247)
||||++|+++. +|.+.|++++.+++++|+++|+|||||||++++||...++....+.. ....+.+.+++++
T Consensus 1 mkIAl~Q~~~~~gd~~~N~~~i~~~i~~A~~~gadLIVfPEl~ltGy~~~d~~~~~~~~------~~~~~~l~~La~~~~ 74 (540)
T PRK13981 1 LRIALAQLNPTVGDIAGNAAKILAAAAEAADAGADLLLFPELFLSGYPPEDLLLRPAFL------AACEAALERLAAATA 74 (540)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECcchhhcCCChhhhhcCHHHH------HHHHHHHHHHHHhcC
Confidence 69999999975 89999999999999999999999999999999999875532222211 2344566777766
Q ss_pred cCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEEEeCCeEEeccccce
Q 025863 160 LKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTGLMFLLFYNGLI 239 (247)
Q Consensus 160 ~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf~~~~grig~~~~lI 239 (247)
+++++++| .++++++++||++++|+ +|++++.|+|+||+++ ..|.|..+|++|++..+|+++++|+|+ +|
T Consensus 75 ~~i~ii~G-~~~~~~~~~yNsa~vi~-~G~i~~~y~K~~L~~~-----~~~~E~~~f~~G~~~~~~~~~g~rigv---~I 144 (540)
T PRK13981 75 GGPAVLVG-HPWREGGKLYNAAALLD-GGEVLATYRKQDLPNY-----GVFDEKRYFAPGPEPGVVELKGVRIGV---PI 144 (540)
T ss_pred CCCEEEEe-CcEeeCCcEEEEEEEEE-CCeEEEEEeeeeCCCC-----CCcCccccccCCCCceEEEECCEEEEE---EE
Confidence 79999999 56778889999999997 7999999999999654 256899999999999999999999988 99
Q ss_pred ecccccc
Q 025863 240 SFSQIIH 246 (247)
Q Consensus 240 CyD~~~~ 246 (247)
|||...+
T Consensus 145 C~D~~~p 151 (540)
T PRK13981 145 CEDIWNP 151 (540)
T ss_pred ehhhcCC
Confidence 9998654
No 35
>PRK02628 nadE NAD synthetase; Reviewed
Probab=99.92 E-value=1.5e-24 Score=214.28 Aligned_cols=152 Identities=25% Similarity=0.279 Sum_probs=127.4
Q ss_pred CceEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHh
Q 025863 81 AKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARL 159 (247)
Q Consensus 81 ~~~kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~ 159 (247)
..||||++|+++. +|++.|++++.+++++|+++|||||||||++++||...+........+. ..+.++.|++.+++
T Consensus 11 ~~mrIAlaQ~~~~~gD~~~Nl~~i~~~i~~A~~~gadLvVfPEL~ltGY~~~dl~~~~~~~~~---~~~~l~~L~~~a~~ 87 (679)
T PRK02628 11 GFVRVAAATPKVRVADPAFNAARILALARRAADDGVALAVFPELSLSGYSCDDLFLQDTLLDA---VEDALATLVEASAD 87 (679)
T ss_pred CcEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHCCCeEEEcccccccCCCcchhhccHHHHHh---hHHHHHHHHHHHhh
Confidence 4699999999987 8999999999999999999999999999999999987664322222211 24788899999999
Q ss_pred cCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCC-----------------
Q 025863 160 LKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETP----------------- 222 (247)
Q Consensus 160 ~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~----------------- 222 (247)
+++++++| ++++.++++||++++|. +|++++.|+|+||+.+ ..|+|+++|++|+..
T Consensus 88 ~~i~ivvG-~p~~~~~~lyNsa~vi~-~G~il~~y~K~hLp~~-----~~f~E~r~F~~G~~~~~~~~~~~g~~vpfG~~ 160 (679)
T PRK02628 88 LDPLLVVG-APLRVRHRLYNCAVVIH-RGRILGVVPKSYLPNY-----REFYEKRWFAPGDGARGETIRLCGQEVPFGTD 160 (679)
T ss_pred cCEEEEEe-eEEEECCEEEEEEEEEc-CCEEEEEeccccCCCC-----CcccccccccCCCCCCCceEeecCeeeccCCc
Confidence 99999999 77777889999999997 7999999999999553 468899999999873
Q ss_pred eEEEe---CCeEEeccccceeccccc
Q 025863 223 TIVDT---GLMFLLFYNGLISFSQII 245 (247)
Q Consensus 223 ~vf~~---~~grig~~~~lICyD~~~ 245 (247)
.+|++ +++++|+ .||||.+-
T Consensus 161 ~vf~~~~~~g~kiGv---~IC~Dlwf 183 (679)
T PRK02628 161 LLFEAEDLPGFVFGV---EICEDLWV 183 (679)
T ss_pred eeEEecccCCcEEEE---EEeccccc
Confidence 24655 5889988 99999864
No 36
>PRK13287 amiF formamidase; Provisional
Probab=99.92 E-value=5.3e-24 Score=194.49 Aligned_cols=150 Identities=22% Similarity=0.339 Sum_probs=121.3
Q ss_pred CCCCceEEEEEecccc-----cCHHHHHHHHHHHHHHHHHC--CCeEEEcCCCCCCCCCCCCcc--hhhhhhccCCCChH
Q 025863 78 PPVAKFKVGLCQLSVT-----ADKERNIAHARRAIEEAAEK--GAKLILLPEIWNSPYSHDSFP--VYAEDIDAGGDASP 148 (247)
Q Consensus 78 ~~~~~~kValvQ~~i~-----~d~~~n~~~i~~~i~~Aa~~--gadLVVfPE~~l~g~~~~~~~--~~~e~~~~~~~~~~ 148 (247)
+..+.+|||++|+++. .|.++|++++.+++++|++. |+|||||||++++||..+.+. +.+..+ +++
T Consensus 9 ~~~~~l~VAlvQ~~~~~~~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~~~~~~~~~~~a~~~-----~g~ 83 (333)
T PRK13287 9 KPIEGVLVALIQYPVPVVESRADIDKQIEQIIKTVHKTKAGYPGLDLIVFPEYSTQGLNTKKWTTEEFLCTV-----DGP 83 (333)
T ss_pred CCCCceEEEEEEcccccCCchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCcccccCCccccchhhhcccC-----CCH
Confidence 4456799999999963 78999999999999999864 899999999999999766432 222222 358
Q ss_pred HHHHHHHHHHhcCcEEEEeeeeeec-CC-eeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCC-CCeEE
Q 025863 149 STAMLSEVARLLKITIVGGSIPERS-GD-RLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE-TPTIV 225 (247)
Q Consensus 149 ~~~~l~~~Ar~~~i~Iv~Gs~~e~~-~~-~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~-~~~vf 225 (247)
.++.++++|+++++++++| +.++. ++ ++|||+++|+|+|+++.+|+|+||+. | ...|.+|+ ..++|
T Consensus 84 ~~~~l~~~a~~~~i~~~~g-~~e~~~~~~~~yNsa~vi~~~G~i~~~YrK~h~~~---p-------~~~~~pG~~~~~v~ 152 (333)
T PRK13287 84 EVDAFAQACKENKVWGVFS-IMERNPDGNEPYNTAIIIDDQGEIILKYRKLHPWV---P-------VEPWEPGDLGIPVC 152 (333)
T ss_pred HHHHHHHHHHHcCeEEEEe-eEEEcCCCCceEEEEEEECCCCcEEEEEeecccCC---c-------cccccCCCCCCceE
Confidence 8999999999999999998 44554 33 39999999999999999999999853 2 13478998 57899
Q ss_pred EeCC-eEEeccccceecccccc
Q 025863 226 DTGL-MFLLFYNGLISFSQIIH 246 (247)
Q Consensus 226 ~~~~-grig~~~~lICyD~~~~ 246 (247)
+++. .|+|+ +||||..-|
T Consensus 153 ~~~~g~kiG~---~ICyD~~fP 171 (333)
T PRK13287 153 DGPGGSKLAV---CICHDGMFP 171 (333)
T ss_pred ECCCCceEEE---EEEecccch
Confidence 9874 59988 999998754
No 37
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=99.92 E-value=2.2e-24 Score=213.35 Aligned_cols=154 Identities=18% Similarity=0.100 Sum_probs=121.8
Q ss_pred CCceEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHH
Q 025863 80 VAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR 158 (247)
Q Consensus 80 ~~~~kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar 158 (247)
|+.||||++|++++ +|++.|++++.+.+++|+++|||||||||++++||.+.+.....+.++. ..+.++.+.+.++
T Consensus 1 ~~~mrIAlaQl~~~~gD~~~N~~~I~~~I~~A~~~gAdLvVfPEL~lTGY~~~Dl~~~~~~~~~---~~~~L~~La~~a~ 77 (700)
T PLN02339 1 MRLLKVATCNLNQWAMDFDGNLKRIKESIAEAKAAGAVYRVGPELEITGYGCEDHFLELDTVTH---SWECLAEILVGDL 77 (700)
T ss_pred CceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccCCCChHHHhhChhHHHH---HHHHHHHHHhhcc
Confidence 34799999999987 7999999999999999999999999999999999987553222222211 1245555555556
Q ss_pred hcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCC---Ce------------
Q 025863 159 LLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET---PT------------ 223 (247)
Q Consensus 159 ~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~---~~------------ 223 (247)
++++.+++| +++..++++||+++++. +|++++.|+|+||+++ ..|+|+++|++|++ ..
T Consensus 78 ~~~i~vvvG-~p~~~~~~lYN~a~vi~-~GkIlg~y~K~hLpny-----~~f~E~r~F~pG~~~~~~~~~~l~~~~~~~~ 150 (700)
T PLN02339 78 TDGILCDIG-MPVIHGGVRYNCRVFCL-NRKILLIRPKMWLAND-----GNYRELRWFTAWKHKKKVEDFQLPEEIAEAT 150 (700)
T ss_pred cCCeEEEEe-eeEEECCeEEEEEEEEe-CCEEEEEEecccCCCC-----CccccccccccCccCCcceeeccccchhhcc
Confidence 789999999 67777789999999995 7999999999999654 46899999999862 22
Q ss_pred ----------EEEeCCeEEeccccceecccccc
Q 025863 224 ----------IVDTGLMFLLFYNGLISFSQIIH 246 (247)
Q Consensus 224 ----------vf~~~~grig~~~~lICyD~~~~ 246 (247)
+|++++.++|+ .||||.+-|
T Consensus 151 g~~~vpfg~~~~~~~g~~iGv---~ICeDlwfP 180 (700)
T PLN02339 151 SQKSVPFGDGYLQFLDTAVAA---ETCEELFTP 180 (700)
T ss_pred CCceeccCcceeecCCeEEEE---EEecccCCC
Confidence 33455678877 999998754
No 38
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.91 E-value=1.2e-23 Score=188.47 Aligned_cols=153 Identities=24% Similarity=0.253 Sum_probs=117.5
Q ss_pred EEEEEecccc-----cCHHHHHHHHHHHHHHHHH-----CCCeEEEcCCCCCCCCCCCCcc------hhhhhhccCCCCh
Q 025863 84 KVGLCQLSVT-----ADKERNIAHARRAIEEAAE-----KGAKLILLPEIWNSPYSHDSFP------VYAEDIDAGGDAS 147 (247)
Q Consensus 84 kValvQ~~i~-----~d~~~n~~~i~~~i~~Aa~-----~gadLVVfPE~~l~g~~~~~~~------~~~e~~~~~~~~~ 147 (247)
+++.+|.... +|+++|++++.+++++|++ +|+|||||||++++||...+.. +.++.+ ++
T Consensus 2 ~~~~~~~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~~gadlivfPE~~ltGy~~~~~~~~~~~~~~a~~~-----~~ 76 (294)
T cd07582 2 TALALQPTCEAAEDRADILANIDRINEQIDAAVGFSGPGLPVRLVVLPEYALQGFPMGEPREVWQFDKAAIDI-----PG 76 (294)
T ss_pred eeEEEecccccccChhhHHHHHHHHHHHHHHHHHhcccCCCceEEEcCccccccCCcccchhhhhhhhccccC-----CC
Confidence 4677888742 7999999999999999986 4799999999999999865432 112222 46
Q ss_pred HHHHHHHHHHHhcCcEEEEeeeeeecC---CeeEEEEEEEccCCcEEEEEeccccCCCC---CCCCccccc-ccccccC-
Q 025863 148 PSTAMLSEVARLLKITIVGGSIPERSG---DRLYNTCCVFGSDGKLIAKHRKIHLFDID---IPGKITFIE-SKSLTAG- 219 (247)
Q Consensus 148 ~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~---~~~yNsa~li~p~G~il~~Y~K~hL~~~~---vP~~~~~~E-~~~f~~G- 219 (247)
+.++.|+++|++++++|++|+ .++++ +++||++++|+|+|+++++|+|+||+..+ +|. ..+.| ..++.+|
T Consensus 77 ~~~~~l~~~A~~~~i~iv~G~-~e~~~~~~~~~yNsa~~i~~~G~i~~~yrK~hl~~~~~e~~p~-~~~~~~~~~~g~g~ 154 (294)
T cd07582 77 PETEALGEKAKELNVYIAANA-YERDPDFPGLYFNTAFIIDPSGEIILRYRKMNSLAAEGSPSPH-DVWDEYIEVYGYGL 154 (294)
T ss_pred HHHHHHHHHHHHcCEEEEEee-eeecCCCCCcEEEEEEEECCCCcEEEEEeeeccCccccccCcc-chhhhhcccCCCcc
Confidence 899999999999999999995 45543 68999999999999999999999997521 111 01122 1234555
Q ss_pred C-CCeEEEeCCeEEeccccceecccccc
Q 025863 220 E-TPTIVDTGLMFLLFYNGLISFSQIIH 246 (247)
Q Consensus 220 ~-~~~vf~~~~grig~~~~lICyD~~~~ 246 (247)
+ .+.+++++++|+|+ +||||...|
T Consensus 155 ~~~~~v~~~~~~~iG~---~ICyD~~fp 179 (294)
T cd07582 155 DALFPVADTEIGNLGC---LACEEGLYP 179 (294)
T ss_pred cccceeecCCCceEEE---EEeecccCh
Confidence 3 36889999999988 999997643
No 39
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.91 E-value=1.1e-24 Score=186.27 Aligned_cols=154 Identities=33% Similarity=0.417 Sum_probs=134.5
Q ss_pred eEEEEEecccccCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCC-CCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcC
Q 025863 83 FKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNS-PYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLK 161 (247)
Q Consensus 83 ~kValvQ~~i~~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~-g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~ 161 (247)
.+||++|+....|..+|+....+++.+|++.||++|.|||.+-- |-....-.++++.+ +++++++++++|+++|
T Consensus 16 ~~vAv~Qm~S~~Dl~kNl~~~keLi~eA~~k~A~~iflPE~~dFi~~n~~esi~Lae~l-----~~k~m~~y~elar~~n 90 (295)
T KOG0807|consen 16 KRVAVAQMTSSNDLTKNLATCKELISEAAQKGAKLIFLPEAFDFIGQNPLESIELAEPL-----DGKFMEQYRELARSHN 90 (295)
T ss_pred ceeEEEeeccchHHHHHHHHHHHHHHHHHHcCCCEEEcchhhhhhcCCcccceeccccc-----ChHHHHHHHHHHHhcC
Confidence 78999999999999999999999999999999999999998752 11222223455554 3799999999999999
Q ss_pred cEEEEeeeeeecC---CeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCC-eEEEeCCeEEecccc
Q 025863 162 ITIVGGSIPERSG---DRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETP-TIVDTGLMFLLFYNG 237 (247)
Q Consensus 162 i~Iv~Gs~~e~~~---~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~-~vf~~~~grig~~~~ 237 (247)
||+.+|...++.+ .+++|+.++|+.+|+++..|+|+|||+++|||+....|+.+-.||+.. +.++++.||+|.
T Consensus 91 IwlSlgg~~~r~~~~~~k~~N~hl~id~~G~i~a~Y~KlHLFDVeipg~~~lkES~~t~pG~~i~~pv~tP~GklGl--- 167 (295)
T KOG0807|consen 91 IWLSLGGHHERSDDGNQKLRNTHLLIDSKGEIRAEYQKLHLFDVEIPGGPRLKESNTTQPGTAIESPVDTPLGKLGL--- 167 (295)
T ss_pred eeEEeccccCCCccccceeeeeEEEEcCCchHHHHHhhhceeEeecCCCcccccccCcCCCcccCCccCCcccccce---
Confidence 9998886666654 689999999999999999999999999999999999999999999984 679999999988
Q ss_pred ceecccc
Q 025863 238 LISFSQI 244 (247)
Q Consensus 238 lICyD~~ 244 (247)
.||||.=
T Consensus 168 aICYDiR 174 (295)
T KOG0807|consen 168 AICYDIR 174 (295)
T ss_pred eeeeecc
Confidence 9999953
No 40
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=99.91 E-value=1.2e-23 Score=193.01 Aligned_cols=149 Identities=19% Similarity=0.180 Sum_probs=118.5
Q ss_pred CCceEEEEEecccc-----cCHHHHHHHHHHHHHHHH--HCCCeEEEcCCCCCCCCCCCC--cchhhhhhccCCCChHHH
Q 025863 80 VAKFKVGLCQLSVT-----ADKERNIAHARRAIEEAA--EKGAKLILLPEIWNSPYSHDS--FPVYAEDIDAGGDASPST 150 (247)
Q Consensus 80 ~~~~kValvQ~~i~-----~d~~~n~~~i~~~i~~Aa--~~gadLVVfPE~~l~g~~~~~--~~~~~e~~~~~~~~~~~~ 150 (247)
...++||++|++++ .|..+|++++.+++++|+ ..++|||||||++++||..+. ..+.+..+ +++..
T Consensus 10 ~~~l~va~vQ~~~p~~~~~~di~~Nl~~i~~~i~~a~~~~~gadLVVfPE~~l~G~~y~~~~~~~~a~~i-----~g~~~ 84 (345)
T PRK13286 10 NDTVGVAVVNYKMPRLHTKAEVLENARKIADMIVGMKQGLPGMDLVIFPEYSTHGIMYDRQEMYETASTI-----PGEET 84 (345)
T ss_pred CCceEEEEEEcCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEcCCccccCCCcChHHHHHhcccC-----CCHHH
Confidence 34699999999843 688999999999999886 358999999999999965432 22223333 36889
Q ss_pred HHHHHHHHhcCcEEEEeeeeee----cCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEEE
Q 025863 151 AMLSEVARLLKITIVGGSIPER----SGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVD 226 (247)
Q Consensus 151 ~~l~~~Ar~~~i~Iv~Gs~~e~----~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf~ 226 (247)
+.++++|+++++++++|...++ .++++|||+++|+++|+++.+|+|+|+|. +...|.+|+...+|+
T Consensus 85 ~~l~~~A~~~~i~~v~~i~ge~~~~~~~~~~yNta~vi~~~G~i~~~YrK~~p~~----------~~e~~~pG~~~~v~~ 154 (345)
T PRK13286 85 AIFAEACRKAKVWGVFSLTGERHEEHPRKAPYNTLILINDKGEIVQKYRKIMPWC----------PIEGWYPGDCTYVSE 154 (345)
T ss_pred HHHHHHHHHcCEEEEEeccccccccCCCCceeEEEEEECCCCeEEEEEEeecCCc----------hhhceecCCCCEEEe
Confidence 9999999999999988733233 13569999999999999999999999853 234578999988999
Q ss_pred eCCe-EEeccccceecccccc
Q 025863 227 TGLM-FLLFYNGLISFSQIIH 246 (247)
Q Consensus 227 ~~~g-rig~~~~lICyD~~~~ 246 (247)
++.| |+|+ +||||...|
T Consensus 155 ~~~G~kiG~---lIC~D~~fP 172 (345)
T PRK13286 155 GPKGLKISL---IICDDGNYP 172 (345)
T ss_pred CCCCcEEEE---EEEecccCh
Confidence 8755 9988 999998643
No 41
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.89 E-value=1e-22 Score=174.87 Aligned_cols=153 Identities=29% Similarity=0.403 Sum_probs=132.2
Q ss_pred CCCceEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCC----------------cch-hhhhh
Q 025863 79 PVAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDS----------------FPV-YAEDI 140 (247)
Q Consensus 79 ~~~~~kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~----------------~~~-~~e~~ 140 (247)
.++..||+++|.... .|..+.++++++++.+|++.|++||||||.++.||+... +.. .++.+
T Consensus 14 ~~s~~~v~ivQ~~t~~~dtpaTL~K~~~~~~Eaa~~Ga~LV~fPEAfiGGYPrg~~Fg~~~G~r~~eGR~ef~kY~a~AI 93 (337)
T KOG0805|consen 14 SSSIVRVTIVQASTVYNDTPATLDKAEKYIVEAASKGAELVLFPEAFIGGYPRGFRFGLAVGVRNEEGRDEFRKYHASAI 93 (337)
T ss_pred cccceEEEEEEcccCCCCCHHHHHHHHHHHHHHhcCCceEEEeehHhccCCCCcceeeEEEeecchhhhHHHHHHHHHhh
Confidence 456799999999865 788899999999999999999999999999999997542 111 22333
Q ss_pred ccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCC
Q 025863 141 DAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGE 220 (247)
Q Consensus 141 ~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~ 220 (247)
+ ..++..++|..+|+++++++++| ..|+++-.+|.|+++|+|+|..++++||+.+ +-.|+-.|..|+
T Consensus 94 e---v~gpEv~~l~~la~~~~v~lv~G-~iEreg~TLYCt~~f~~p~g~~lGKHRKlmP---------TalERciWGqGD 160 (337)
T KOG0805|consen 94 E---VPGPEVERLAELAKKNNVYLVMG-AIEREGYTLYCTVLFFSPQGQFLGKHRKLMP---------TALERCIWGQGD 160 (337)
T ss_pred c---CCChHHHHHHHHhhcCCeEEEEE-EEeccccEEEEEEEEECCCcccccccccccc---------chhhheeeccCC
Confidence 3 45799999999999999999999 6799999999999999999999999999987 347888888776
Q ss_pred C--CeEEEeCCeEEeccccceeccccccC
Q 025863 221 T--PTIVDTGLMFLLFYNGLISFSQIIHL 247 (247)
Q Consensus 221 ~--~~vf~~~~grig~~~~lICyD~~~~~ 247 (247)
+ .+||+|+.|+||- +||||+.|||
T Consensus 161 GSTiPV~dT~iGKIG~---AICWEN~MPl 186 (337)
T KOG0805|consen 161 GSTIPVYDTPIGKIGA---AICWENRMPL 186 (337)
T ss_pred Ccccceeecccchhce---eeecccccHH
Confidence 5 7999999999966 9999999986
No 42
>TIGR00546 lnt apolipoprotein N-acyltransferase. This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.
Probab=99.88 E-value=1.8e-22 Score=187.73 Aligned_cols=148 Identities=19% Similarity=0.260 Sum_probs=116.9
Q ss_pred CceEEEEEeccccc-------CHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHH
Q 025863 81 AKFKVGLCQLSVTA-------DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAML 153 (247)
Q Consensus 81 ~~~kValvQ~~i~~-------d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l 153 (247)
+++||+++|.++.. +.++|++++.+++++|.+ ++|+|||||+++++|..+. .....+.+
T Consensus 158 ~~~~ValvQ~n~~~~~k~~~~~~~~~~~~~~~~~~~a~~-~~dlVv~PE~a~~~~~~~~-------------~~~~~~~l 223 (391)
T TIGR00546 158 PTLNVALVQPNIPQDLKFDSEGLEAILEILTSLTKQAVE-KPDLVVWPETAFPFDLENS-------------PQKLADRL 223 (391)
T ss_pred CcceEEEEcCCCCcccccChhhHHHHHHHHHHHHhccCC-CCCEEEcCccccccchhhC-------------cHHHHHHH
Confidence 35899999999863 367899999999998876 8999999999998874221 12467889
Q ss_pred HHHHHhcCcEEEEeeeeeecC-C--eeEEEEEEEccCCcEEEEEeccccCCCC--CCCCccc------cc---ccccccC
Q 025863 154 SEVARLLKITIVGGSIPERSG-D--RLYNTCCVFGSDGKLIAKHRKIHLFDID--IPGKITF------IE---SKSLTAG 219 (247)
Q Consensus 154 ~~~Ar~~~i~Iv~Gs~~e~~~-~--~~yNsa~li~p~G~il~~Y~K~hL~~~~--vP~~~~~------~E---~~~f~~G 219 (247)
+++++++++++++|+ .+.++ + ++||++++++|+|+++.+|+|+||++++ +|.+..+ .+ ...|++|
T Consensus 224 ~~~a~~~~~~ii~G~-~~~~~~~~~~~yNsa~~~~~~G~~~~~Y~K~~LvPfgEyiP~~~~~~~~~~~~~~~~~~~~~~G 302 (391)
T TIGR00546 224 KLLVLSKGIPILIGA-PDAVPGGPYHYYNSAYLVDPGGEVVQRYDKVKLVPFGEYIPLGFLFKWLSKLFFLLSQEDFSRG 302 (391)
T ss_pred HHHHHhCCCEEEEec-ccccCCCCCceeeEEEEECCCCCccccccceeccCCcCCCChHHHHHHHHHHhccCCccCCCCC
Confidence 999999999999995 44333 3 7999999999999999999999997764 3311110 01 2478999
Q ss_pred CCCeEEEeCCeEEeccccceecccccc
Q 025863 220 ETPTIVDTGLMFLLFYNGLISFSQIIH 246 (247)
Q Consensus 220 ~~~~vf~~~~grig~~~~lICyD~~~~ 246 (247)
++..+++++++|+|+ +||||..-+
T Consensus 303 ~~~~~~~~~~~~~g~---~ICyE~~fp 326 (391)
T TIGR00546 303 PGPQVLKLPGGKIAP---LICYESIFP 326 (391)
T ss_pred CCCCCCcCCCceeee---eEEeehhch
Confidence 999999999999977 999998653
No 43
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.87 E-value=5.8e-22 Score=171.38 Aligned_cols=195 Identities=25% Similarity=0.376 Sum_probs=161.9
Q ss_pred cceeccCCCCccCChhhhhhcCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCceEEEEEecccc--------cCHHHH
Q 025863 28 RSIFLGKAKPVFQSPPLIRTHSSNPNPNPIMASSSKPEQARAPPALPLPTPPVAKFKVGLCQLSVT--------ADKERN 99 (247)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kValvQ~~i~--------~d~~~n 99 (247)
+|++||++-+.+.+|. .+ -..++...|..+.+.+... .+.....+.++|+++|..+. ....+.
T Consensus 28 ~r~lygr~lr~l~lp~---~a-----~~las~~df~lqgy~f~a~-keq~r~pr~vrvgliqn~i~lpttapv~eq~~ai 98 (387)
T KOG0808|consen 28 NRLLYGRSLRQLVLPE---SA-----KALASKHDFDLQGYSFSAD-KEQMRNPRVVRVGLIQNSIALPTTAPVSEQTRAI 98 (387)
T ss_pred HHHHhCCchhhhcCch---HH-----HHhhcccCcceeeeeeccc-hhhhcCCcEEEEeeecccccCCCCCcHHHHHHHH
Confidence 6899999999999998 44 4457788899998888655 44444556799999999874 134556
Q ss_pred HHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCC-----CcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeec-
Q 025863 100 IAHARRAIEEAAEKGAKLILLPEIWNSPYSHD-----SFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERS- 173 (247)
Q Consensus 100 ~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~-----~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~- 173 (247)
.+++...|+.|+..|+++++|.|.|..+|.+. .|.+++|..+ +++..+.++++|+++++.|+-. +.|++
T Consensus 99 h~r~kaiieaaa~agvniiclqeawtmpfafctrerlpwtefaesv~----~gptt~flqklakkhdmvivsp-ilerd~ 173 (387)
T KOG0808|consen 99 HDRLKAIIEAAAVAGVNIICLQEAWTMPFAFCTRERLPWTEFAESVD----TGPTTKFLQKLAKKHDMVIVSP-ILERDI 173 (387)
T ss_pred HHHHHHHHHHHHhcCccEEEeehhhcCchhhhccccCchhhhccccc----cCchHHHHHHHHhhCCeEEEeh-hhhccc
Confidence 77888889999999999999999999987543 2566777776 4699999999999999999876 77776
Q ss_pred --CCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCC-CeEEEeCCeEEeccccceecccc
Q 025863 174 --GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGET-PTIVDTGLMFLLFYNGLISFSQI 244 (247)
Q Consensus 174 --~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~-~~vf~~~~grig~~~~lICyD~~ 244 (247)
++-++||+++|+.+|+++++.||.|. |-..+|.|+.++..|+- .+||+|..|||++ -|||-.-
T Consensus 174 ehgdvlwntavvisn~g~vigk~rknhi-----prvgdfnestyymeg~lghpvfet~fgriav---nicygrh 239 (387)
T KOG0808|consen 174 EHGDVLWNTAVVISNNGNVIGKHRKNHI-----PRVGDFNESTYYMEGDLGHPVFETVFGRIAV---NICYGRH 239 (387)
T ss_pred ccCceeeeeeEEEccCCceecccccccC-----CcccccCcceeEeecCCCCceeeeecceEEE---EeeccCC
Confidence 56799999999999999999999997 44469999999999984 8999999999988 9999653
No 44
>PRK12291 apolipoprotein N-acyltransferase; Reviewed
Probab=99.85 E-value=1.1e-20 Score=177.36 Aligned_cols=141 Identities=19% Similarity=0.252 Sum_probs=111.3
Q ss_pred eEEEEEecccccC-------HHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHH
Q 025863 83 FKVGLCQLSVTAD-------KERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSE 155 (247)
Q Consensus 83 ~kValvQ~~i~~d-------~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~ 155 (247)
.+|+++|.|+.++ .+++++++.+++++|.+.++|+|||||.+++.+... .++..+.+++
T Consensus 195 ~~V~lVQ~ni~q~~Kw~~~~~~~~l~~~~~l~~~a~~~~~dLVVwPEta~p~~~~~--------------~~~~~~~l~~ 260 (418)
T PRK12291 195 VNIELVNTNIPQDLKWDKENLKSIINENLKEIDKAIDEKKDLIVLPETAFPLALNN--------------SPILLDKLKE 260 (418)
T ss_pred CEEEEEeCCCCcccccChhhHHHHHHHHHHHHHHHhccCCCEEEeCCcccccchhh--------------CHHHHHHHHH
Confidence 4999999998743 367899999999998888999999999998754211 1246677777
Q ss_pred HHHhcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCC--CCCCc---------ccccccccccCCCCeE
Q 025863 156 VARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDID--IPGKI---------TFIESKSLTAGETPTI 224 (247)
Q Consensus 156 ~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~--vP~~~---------~~~E~~~f~~G~~~~v 224 (247)
.+ .++.+++|+ .+.+++++|||++++++ |+ +..|+|.||++++ +|-+. .+.|...|++|++..+
T Consensus 261 ~~--~~~~ii~G~-~~~~~~~~yNS~~vi~~-G~-~~~Y~K~hLVPFGEyiP~~~~l~~~~~~~~~~~~~~f~~G~~~~~ 335 (418)
T PRK12291 261 LS--HKITIITGA-LRVEDGHIYNSTYIFSK-GN-VQIADKVILVPFGEEIPLPKFFKKPINKLFFGGASDFSKASKFSD 335 (418)
T ss_pred hc--cCCcEEEee-eeccCCceEEEEEEECC-CC-cceecccCCCCCcccCccHHHHHhhhHHHhccCcccCCCCCCCcc
Confidence 74 578999994 45566789999999975 77 6899999998775 45211 1356678999999999
Q ss_pred EEeCCeEEeccccceeccccc
Q 025863 225 VDTGLMFLLFYNGLISFSQII 245 (247)
Q Consensus 225 f~~~~grig~~~~lICyD~~~ 245 (247)
+++++.|+|. +||||.+-
T Consensus 336 ~~~~g~~ig~---lICYE~~F 353 (418)
T PRK12291 336 FTLDGVKFRN---AICYEATS 353 (418)
T ss_pred eeeCCeEEEE---EEeeeecc
Confidence 9999999977 99999864
No 45
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed
Probab=99.84 E-value=5.5e-21 Score=183.35 Aligned_cols=147 Identities=20% Similarity=0.228 Sum_probs=112.7
Q ss_pred ceEEEEEeccccc-------CHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHH
Q 025863 82 KFKVGLCQLSVTA-------DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLS 154 (247)
Q Consensus 82 ~~kValvQ~~i~~-------d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~ 154 (247)
++||+++|.++.. +.++|++++.++++++ ++++|+|||||.+++++..++ .++..+.++
T Consensus 219 ~~~ValvQ~ni~~~~k~~~~~~~~~l~~~~~~~~~~-~~~~dlvV~PE~a~p~~~~~~-------------~~~~~~~l~ 284 (505)
T PRK00302 219 ALKVALVQGNIPQSLKWDPAGLEATLQKYLDLSRPA-LGPADLIIWPETAIPFLLEDL-------------PQAFLKALD 284 (505)
T ss_pred CcEEEEECCCCChhcccCHHHHHHHHHHHHHHHhcc-cCCCCEEEeCCcccccccccc-------------cHHHHHHHH
Confidence 5899999999863 4678899999998854 578999999999987652110 135677899
Q ss_pred HHHHhcCcEEEEeeeeeec--CC-eeEEEEEEEccCCcEEEEEeccccCCCC--CCCCccc--------ccccccccCC-
Q 025863 155 EVARLLKITIVGGSIPERS--GD-RLYNTCCVFGSDGKLIAKHRKIHLFDID--IPGKITF--------IESKSLTAGE- 220 (247)
Q Consensus 155 ~~Ar~~~i~Iv~Gs~~e~~--~~-~~yNsa~li~p~G~il~~Y~K~hL~~~~--vP~~~~~--------~E~~~f~~G~- 220 (247)
++++++++++++|+..+.+ ++ ++||+++++++ |+++.+|+|+||++++ +|.+..+ .+...|++|+
T Consensus 285 ~~a~~~~~~il~G~~~~~~~~~~~~~yNsa~~i~~-g~~~~~Y~K~~LvPfgE~~P~~~~~~~~~~~~~~~~~~~~~G~~ 363 (505)
T PRK00302 285 DLAREKGSALITGAPRAENKQGRYDYYNSIYVLGP-YGILNRYDKHHLVPFGEYVPLESLLRPLAPFFNLPMGDFSRGPY 363 (505)
T ss_pred HHHHhCCCEEEEecccccCCCCCCceeeEEEEECC-CCCcCcccccccCCCcCCCChHHHHHHHHHhcCCCcCCCCCCCC
Confidence 9999999999999543222 23 69999999998 7799999999997664 3322111 1123689998
Q ss_pred CCeEEEeCCeEEeccccceecccccc
Q 025863 221 TPTIVDTGLMFLLFYNGLISFSQIIH 246 (247)
Q Consensus 221 ~~~vf~~~~grig~~~~lICyD~~~~ 246 (247)
+..+++++++|+|+ +||||...|
T Consensus 364 ~~~v~~~~~~~ig~---~ICyE~~fp 386 (505)
T PRK00302 364 VQPPLLAKGLKLAP---LICYEIIFP 386 (505)
T ss_pred CCCCcccCCceEEE---EEeehhcCh
Confidence 78899999999988 999998754
No 46
>PRK13825 conjugal transfer protein TraB; Provisional
Probab=99.74 E-value=3.1e-17 Score=152.60 Aligned_cols=140 Identities=14% Similarity=0.095 Sum_probs=103.2
Q ss_pred EEEEEecccccC-----HHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHH
Q 025863 84 KVGLCQLSVTAD-----KERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR 158 (247)
Q Consensus 84 kValvQ~~i~~d-----~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar 158 (247)
++-.+++++.++ ..+...++.+.+++|.+.++|+|||||+++++|.... .. .+.+.++
T Consensus 187 ~w~~v~t~~~~~~~~~~~~~~~~~~~~~v~~A~~~g~dlIVlPEta~~~~~~~~--------------~~---~~~~~l~ 249 (388)
T PRK13825 187 GWVGVDTQLGRSLGRDASLERRRELIATVRAAAAAGARVVVLPESALGFWTPTT--------------ER---LWRESLR 249 (388)
T ss_pred CeEEEECCcccccCchhhHHHHHHHHHHHHhhcccCCCEEEccCcccccccccc--------------cH---HHHHHHH
Confidence 677788876522 1244556677777778889999999999998874211 01 2355568
Q ss_pred hcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCC--CCCCcccccccccccCC-CCeEEEeCCeEEecc
Q 025863 159 LLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDID--IPGKITFIESKSLTAGE-TPTIVDTGLMFLLFY 235 (247)
Q Consensus 159 ~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~--vP~~~~~~E~~~f~~G~-~~~vf~~~~grig~~ 235 (247)
++++.+++|+ .+++++++||++++++++|.+ ..|+|+||++++ +|....+.|..++.+|. +..+|++++.|+|.
T Consensus 250 ~~~i~II~G~-~~~~~~~~yNsa~v~~~~G~~-~~Y~K~~LvPfgE~~P~~~~~~e~~~~~~g~~~~~vf~l~g~rvg~- 326 (388)
T PRK13825 250 GSDVTVIAGA-AVVDPGGYDNVLVAISAGGGR-ILYRERMPVPVSMWQPWRPWTGQGGGARAHFFANPVVEIDGRRAAP- 326 (388)
T ss_pred hCCCeEEEEe-eecCCCCceEEEEEEeCCCCe-eeEeeeeCcCccccCchHHhhccccCCCCCCCCCCceeeCCeEEEE-
Confidence 9999999995 456778899999999998864 599999997764 34222234777788774 34689999999987
Q ss_pred ccceeccccc
Q 025863 236 NGLISFSQII 245 (247)
Q Consensus 236 ~~lICyD~~~ 245 (247)
+||||...
T Consensus 327 --lICYE~~F 334 (388)
T PRK13825 327 --LICYEQLL 334 (388)
T ss_pred --EEeeeecC
Confidence 99999864
No 47
>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.63 E-value=2.1e-15 Score=145.02 Aligned_cols=149 Identities=19% Similarity=0.204 Sum_probs=103.3
Q ss_pred CCceEEEEEeccccc----CHHHHHHHHHHHHHH---HH--HCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHH
Q 025863 80 VAKFKVGLCQLSVTA----DKERNIAHARRAIEE---AA--EKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPST 150 (247)
Q Consensus 80 ~~~~kValvQ~~i~~----d~~~n~~~i~~~i~~---Aa--~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~ 150 (247)
...++|+++|.++++ |.++..+.+...+.. +. ..++|+|||||.+++-.. +.. .+..
T Consensus 225 ~~~~~V~lvQ~nI~q~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~dlVIwPEtA~p~~~--------~~~------~~~~ 290 (518)
T COG0815 225 EPTLTVALVQGNIPQDLKWDADALARLIAGYLEEEFLAAVDKQKPDLVVWPETALPFDL--------TRH------PDAL 290 (518)
T ss_pred CCceEEEEecCCCcccccCCHHHHHHHHHhhhhccccccccCCCCCEEEccccccccch--------hhc------chHH
Confidence 345999999999873 344433333333322 22 378999999999986221 111 1335
Q ss_pred HHHHHHHHhcCcEEEEeeeeee--cCC--eeEEEEEEEccCCcEEEEEeccccCCCC--CCCCcccc--------ccccc
Q 025863 151 AMLSEVARLLKITIVGGSIPER--SGD--RLYNTCCVFGSDGKLIAKHRKIHLFDID--IPGKITFI--------ESKSL 216 (247)
Q Consensus 151 ~~l~~~Ar~~~i~Iv~Gs~~e~--~~~--~~yNsa~li~p~G~il~~Y~K~hL~~~~--vP~~~~~~--------E~~~f 216 (247)
.++.+.+++.|+.+++| ..+. .++ ++|||+++++++|+++.+|+|.||.||+ +|.+.-+. ....|
T Consensus 291 ~~~~~~~~~~~~~~iiG-~~~~~~~~~~~~yyNSv~~~~~~~~~~~~ydK~~LVPFGEYiP~~~~l~~~~~~~~~~~~~f 369 (518)
T COG0815 291 ARLAEALQRVGAPLLIG-TDVDGPAPGGGIYYNSVLVLDPGGEGVYRYDKVHLVPFGEYIPFPELLRPLYFFLNLPMSDF 369 (518)
T ss_pred HHHHHHHHhcCCcEEEe-ccccccCCCCcceeeEEEEecCCCCccccccceeeeCCccccchHHHHHHHhhhhccccccc
Confidence 66888888999999999 3332 233 4899999999999999999999998776 44221110 12357
Q ss_pred ccCCCCeEEEeCCe-EEeccccceecccccc
Q 025863 217 TAGETPTIVDTGLM-FLLFYNGLISFSQIIH 246 (247)
Q Consensus 217 ~~G~~~~vf~~~~g-rig~~~~lICyD~~~~ 246 (247)
.+|+...++.+.++ +++. +||||++-+
T Consensus 370 ~~G~~~~v~~~~~~~~~~~---~ICYE~~F~ 397 (518)
T COG0815 370 SRGPGPQVLLLAGGPKIAP---LICYEAIFP 397 (518)
T ss_pred cCCCCCcceecCCCceeec---eeeehhhch
Confidence 78999988888876 5866 999999753
No 48
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=98.81 E-value=1.2e-08 Score=95.72 Aligned_cols=131 Identities=26% Similarity=0.298 Sum_probs=106.1
Q ss_pred CCCceEEEEEecccc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHH
Q 025863 79 PVAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVA 157 (247)
Q Consensus 79 ~~~~~kValvQ~~i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~A 157 (247)
|++.++||.+++|.| .|.+.|.++|.+.|++|++.||.+-+=||+-.+||.+.+...-.+... ..-+.+.++.
T Consensus 1 m~r~vtvAtc~lNqWAlDFegN~~rI~~Si~eAk~~gA~~RlGPELEi~GYgC~DHf~E~Dt~~------HswE~l~~l~ 74 (706)
T KOG2303|consen 1 MGRKVTVATCTLNQWALDFEGNMQRILKSIEEAKARGARYRLGPELEITGYGCEDHFLESDTLL------HSWEMLAELV 74 (706)
T ss_pred CCceEEEEEechhhhhhhccccHHHHHHHHHHHHhcCCeeecCCceeecCCChHHhhccchHHH------HHHHHHHHHH
Confidence 456799999999998 799999999999999999999999999999999999876322222221 3445566665
Q ss_pred H---hcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCC
Q 025863 158 R---LLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETP 222 (247)
Q Consensus 158 r---~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~ 222 (247)
. ..++.+.+| +|....+-.||+.+++- +|+|+....|+-|.+ ...++|.+||++=.+.
T Consensus 75 ~~~~~~~il~diG-mPv~hr~~ryNCrv~~~-n~kil~IRpKm~lan-----DgnyRE~RwFt~W~~~ 135 (706)
T KOG2303|consen 75 ESPVTQDILCDIG-MPVMHRNVRYNCRVLFL-NRKILLIRPKMWLAN-----DGNYRESRWFTPWTRP 135 (706)
T ss_pred cCCCCCCeeEecC-Cchhhhhhhhccceeec-CCeEEEEcccceecc-----CCCchhhccccccccc
Confidence 3 347888999 89988999999999884 899999999999954 3578999999875543
No 49
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=86.96 E-value=5.5 Score=35.62 Aligned_cols=71 Identities=17% Similarity=0.153 Sum_probs=44.0
Q ss_pred HHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecC-CeeEEEEEEE
Q 025863 106 AIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSG-DRLYNTCCVF 184 (247)
Q Consensus 106 ~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~-~~~yNsa~li 184 (247)
..+..+.+|||+|+.|-.+.... . ..+...++.-|.+++++++.-...-.++ ..++=.+.++
T Consensus 161 ~~r~la~~GAdill~ps~~~~~~---------~--------~~w~~~~~aRA~En~~~vv~aN~~G~~~~~~~~G~S~iv 223 (291)
T cd07565 161 IARECAYKGAELIIRIQGYMYPA---------K--------DQWIITNKANAWCNLMYTASVNLAGFDGVFSYFGESMIV 223 (291)
T ss_pred HHHHHHHCCCeEEEECCcCCCCc---------c--------hHHHHHHHHHHHhcCcEEEEecccccCCCceeeeeeEEE
Confidence 44445568999999997653211 0 1334456777889999987432211122 2445567889
Q ss_pred ccCCcEEEE
Q 025863 185 GSDGKLIAK 193 (247)
Q Consensus 185 ~p~G~il~~ 193 (247)
+|+|+++..
T Consensus 224 dP~G~ila~ 232 (291)
T cd07565 224 NFDGRTLGE 232 (291)
T ss_pred CCCCCEEEe
Confidence 999998754
No 50
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=85.41 E-value=1.1 Score=40.48 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=33.5
Q ss_pred HhcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCC
Q 025863 158 RLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFD 201 (247)
Q Consensus 158 r~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~ 201 (247)
+.++-..+.+ +..++...||+.++|+-+|..+.+|+|.|++.
T Consensus 110 k~yns~~~~~--~~g~l~~~yrk~hlFD~d~~~~~ry~e~~~~~ 151 (298)
T KOG0806|consen 110 KLYNSCADSS--CPGDGLAKYRKNHLFDTDGPGVIRYRESHLLS 151 (298)
T ss_pred cccCcccccC--CCcchhheeeeeEEeccCCccceeeeeeeccC
Confidence 5566655554 33556679999999999999999999999987
No 51
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=83.09 E-value=9.9 Score=32.62 Aligned_cols=69 Identities=20% Similarity=0.285 Sum_probs=40.6
Q ss_pred HHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCC-eeEEEEEEEc
Q 025863 107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGD-RLYNTCCVFG 185 (247)
Q Consensus 107 i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~-~~yNsa~li~ 185 (247)
.+..+..|||+|+.|=.+...+. ......++.-|.+++++++.-...-.+++ .++=.+.+++
T Consensus 151 ~~~~~~~gadii~~p~~~~~~~~-----------------~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~G~S~i~~ 213 (254)
T cd07576 151 VRALALAGADLVLVPTALMEPYG-----------------FVARTLVPARAFENQIFVAYANRCGAEDGLTYVGLSSIAG 213 (254)
T ss_pred HHHHHHCCCCEEEECCccCCCcc-----------------hhhhhhhHHHHHhCCCEEEEEcccCCCCCceeeeeeEEEC
Confidence 34445679999999865432221 02233456677899999875421111222 2334457889
Q ss_pred cCCcEEE
Q 025863 186 SDGKLIA 192 (247)
Q Consensus 186 p~G~il~ 192 (247)
|+|+++.
T Consensus 214 p~G~il~ 220 (254)
T cd07576 214 PDGTVLA 220 (254)
T ss_pred CCCCEeE
Confidence 9999764
No 52
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=81.26 E-value=16 Score=31.82 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=41.4
Q ss_pred HHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCC-eeEEEEEEEcc
Q 025863 108 EEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGD-RLYNTCCVFGS 186 (247)
Q Consensus 108 ~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~-~~yNsa~li~p 186 (247)
+..+.+|+|+|+.|=.+.......+ . + .......++..|.+++++++.-...-.+++ .++=.+.+++|
T Consensus 154 r~~~~~ga~li~~ps~~~~~~~~~~---~-~-------~~~~~~~~~arA~en~~~vv~~n~~G~~~~~~~~G~S~ii~p 222 (268)
T cd07580 154 RLLALQGADIVCVPTNWVPMPRPPE---G-G-------PPMANILAMAAAHSNGLFIACADRVGTERGQPFIGQSLIVGP 222 (268)
T ss_pred HHHHHcCCCEEEEcCcccccCCccc---c-c-------CcHHHHhhHHHHhhCCcEEEEEeeeeeccCceEeeeeEEECC
Confidence 4445679999999976643221100 0 0 012222345567789999875322112223 23345689999
Q ss_pred CCcEEE
Q 025863 187 DGKLIA 192 (247)
Q Consensus 187 ~G~il~ 192 (247)
+|+++.
T Consensus 223 ~G~~~~ 228 (268)
T cd07580 223 DGWPLA 228 (268)
T ss_pred CCCeee
Confidence 999764
No 53
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=79.53 E-value=16 Score=31.44 Aligned_cols=70 Identities=19% Similarity=0.244 Sum_probs=40.3
Q ss_pred HHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCeeEE-EEEEE
Q 025863 106 AIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYN-TCCVF 184 (247)
Q Consensus 106 ~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yN-sa~li 184 (247)
..+.++++|+|+++.|=.|.. .. . ..+....+.-|.+++++++.-...-.+++..|+ ...++
T Consensus 154 ~~r~~~~~gadll~~ps~~~~----~~----~---------~~~~~~~~~rA~En~~~vv~~n~~g~~~~~~~~G~S~ii 216 (258)
T cd07584 154 VARILTLKGAEVIFCPSAWRE----QD----A---------DIWDINLPARALENTVFVAAVNRVGNEGDLVLFGKSKIL 216 (258)
T ss_pred HHHHHHHCCCcEEEECCccCC----CC----c---------hHHHHHHHHHHHhCCcEEEEECccccCCCceecceeEEE
Confidence 345566789999999954321 10 0 122223455678999999852111112223333 56788
Q ss_pred ccCCcEEE
Q 025863 185 GSDGKLIA 192 (247)
Q Consensus 185 ~p~G~il~ 192 (247)
+|+|+++.
T Consensus 217 ~p~G~il~ 224 (258)
T cd07584 217 NPRGQVLA 224 (258)
T ss_pred CCCCceee
Confidence 99999764
No 54
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=79.39 E-value=8.7 Score=33.21 Aligned_cols=70 Identities=20% Similarity=0.158 Sum_probs=41.3
Q ss_pred HHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCe-eEEEEEEEcc
Q 025863 108 EEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDR-LYNTCCVFGS 186 (247)
Q Consensus 108 ~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~-~yNsa~li~p 186 (247)
+..+..|+|+++.|=.+. +.... . ......++..|.+++++++.-...-.+++. ++=.+.+++|
T Consensus 156 r~~~~~ga~ll~~ps~~~--~~~~~------~-------~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~G~S~ii~p 220 (261)
T cd07570 156 AELALAGADLILNLSASP--FHLGK------Q-------DYRRELVSSRSARTGLPYVYVNQVGGQDDLVFDGGSFIADN 220 (261)
T ss_pred HHHHHcCCcEEEEeCCCc--cccCc------H-------HHHHHHHHHHHHHhCCcEEEEeCCCCCceEEEECceEEEcC
Confidence 334467999999996542 21110 0 123445777889999998764321112222 2233588999
Q ss_pred CCcEEE
Q 025863 187 DGKLIA 192 (247)
Q Consensus 187 ~G~il~ 192 (247)
+|+++.
T Consensus 221 ~G~vl~ 226 (261)
T cd07570 221 DGELLA 226 (261)
T ss_pred CCCEEE
Confidence 999875
No 55
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=78.99 E-value=16 Score=31.75 Aligned_cols=75 Identities=17% Similarity=0.208 Sum_probs=43.4
Q ss_pred HHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeec-CCeeEEEEEEEccC
Q 025863 109 EAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERS-GDRLYNTCCVFGSD 187 (247)
Q Consensus 109 ~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~-~~~~yNsa~li~p~ 187 (247)
..+..|+|+|+.|=.+........ . .. ...+....+..|.+++++++.-+..-.+ +..++-.+.+++|+
T Consensus 154 ~~~~~ga~lil~ps~~~~~~~~~~---~-~~------~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~G~S~ii~p~ 223 (269)
T cd07586 154 LLALDGADVIFIPANSPARGVGGD---F-DN------EENWETLLKFYAMMNGVYVVFANRVGVEDGVYFWGGSRVVDPD 223 (269)
T ss_pred HHHHCCCCEEEEeCCCccccCccc---c-ch------hHHHHHHHHHHHHHhCCeEEEEeeecCcCCceEeCCcEEECCC
Confidence 345689999999966432111000 0 00 0134456677789999998764321112 22344456889999
Q ss_pred CcEEEE
Q 025863 188 GKLIAK 193 (247)
Q Consensus 188 G~il~~ 193 (247)
|+++..
T Consensus 224 G~il~~ 229 (269)
T cd07586 224 GEVVAE 229 (269)
T ss_pred CCEEEe
Confidence 998753
No 56
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=78.80 E-value=8.4 Score=33.29 Aligned_cols=70 Identities=14% Similarity=0.210 Sum_probs=39.9
Q ss_pred HHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecC-Ce-eEEEEEE
Q 025863 106 AIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSG-DR-LYNTCCV 183 (247)
Q Consensus 106 ~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~-~~-~yNsa~l 183 (247)
..+.++.+|+|||+.|=.+..... . ..+....+.-|.+++++++.....-.++ +. ++=.+.+
T Consensus 161 ~~r~~~~~gadli~~p~~~~~~~~--------~--------~~~~~~~~~rA~e~~~~vv~~n~~G~~~~~~~~~G~S~i 224 (265)
T cd07572 161 LARALARQGADILTVPAAFTMTTG--------P--------AHWELLLRARAIENQCYVVAAAQAGDHEAGRETYGHSMI 224 (265)
T ss_pred HHHHHHHCCCCEEEECCCCCCCcc--------h--------HHHHHHHHHHHHhcCCEEEEEcccccCCCCCeecceeEE
Confidence 455566789999999954321110 0 1223334566788999987653211122 22 2224677
Q ss_pred EccCCcEE
Q 025863 184 FGSDGKLI 191 (247)
Q Consensus 184 i~p~G~il 191 (247)
++|+|+++
T Consensus 225 ~~p~G~il 232 (265)
T cd07572 225 VDPWGEVL 232 (265)
T ss_pred ECCCcHHH
Confidence 89999865
No 57
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=78.28 E-value=15 Score=31.65 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=41.3
Q ss_pred HHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeee-cCCe-eEEEEEEE
Q 025863 107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPER-SGDR-LYNTCCVF 184 (247)
Q Consensus 107 i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~-~~~~-~yNsa~li 184 (247)
.+..+..|+|||+.|=.+...... .. .+.+...++.-|.+++++++.. ...- .++- +.=...++
T Consensus 149 ~r~l~~~gadlil~p~~~~~~~~~-------~~------~~~~~~~~~~rA~e~~~~vv~~-n~~g~~~~~~~~G~S~i~ 214 (261)
T cd07585 149 VRATALLGAEILFAPHATPGTTSP-------KG------REWWMRWLPARAYDNGVFVAAC-NGVGRDGGEVFPGGAMIL 214 (261)
T ss_pred HHHHHHCCCCEEEECCccCCCCCc-------ch------HHHHHHHhHHHHhhcCeEEEEe-cccccCCCceecceEEEE
Confidence 455557899999998543321100 00 0133344666778899998753 2211 1222 22345788
Q ss_pred ccCCcEEEE
Q 025863 185 GSDGKLIAK 193 (247)
Q Consensus 185 ~p~G~il~~ 193 (247)
+|+|+++..
T Consensus 215 ~p~G~v~~~ 223 (261)
T cd07585 215 DPYGRVLAE 223 (261)
T ss_pred CCCCCEEec
Confidence 999998753
No 58
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=77.72 E-value=12 Score=33.92 Aligned_cols=71 Identities=14% Similarity=0.195 Sum_probs=44.1
Q ss_pred HHHHHHHC-CCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEE
Q 025863 106 AIEEAAEK-GAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVF 184 (247)
Q Consensus 106 ~i~~Aa~~-gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li 184 (247)
..+..+.+ |+|+++.|=.|...... ..+...++.-|.+++++++.- .... ...++-.+.++
T Consensus 188 ~~r~la~~~GAdlil~paaw~~~~~~----------------~~w~~l~~arA~eN~~~vi~~-N~~g-~~~~~G~S~iv 249 (299)
T cd07567 188 PALELVKKLGVDDIVFPTAWFSELPF----------------LTAVQIQQAWAYANGVNLLAA-NYNN-PSAGMTGSGIY 249 (299)
T ss_pred HHHHHHHhCCCCEEEECCccCCCCCc----------------hhHHHHHHHHHHHcCceEEEe-cCCC-CcCccccceEE
Confidence 34444456 99999999655321110 023345677888999999764 2221 12234556789
Q ss_pred ccC-CcEEEEE
Q 025863 185 GSD-GKLIAKH 194 (247)
Q Consensus 185 ~p~-G~il~~Y 194 (247)
+|. |+++...
T Consensus 250 ~P~~G~v~a~~ 260 (299)
T cd07567 250 AGRSGALVYHY 260 (299)
T ss_pred cCCCCcEEEEe
Confidence 999 9998765
No 59
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=76.46 E-value=23 Score=32.68 Aligned_cols=71 Identities=17% Similarity=0.230 Sum_probs=44.1
Q ss_pred HHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCC-eeEEEEEEE
Q 025863 106 AIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGD-RLYNTCCVF 184 (247)
Q Consensus 106 ~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~-~~yNsa~li 184 (247)
..+.++.+|||||+-|-.|..+. . ......++..|.+++++++.-...-.+++ .++=.+.++
T Consensus 174 ~~R~la~~GAelii~psa~~~~~--------~---------~~~~~~~rarA~eN~~yVv~aN~~G~~~~~~~~G~S~Iv 236 (345)
T PRK13286 174 IWRDCAMKGAELIVRCQGYMYPA--------K---------EQQVLVAKAMAWANNCYVAVANAAGFDGVYSYFGHSAII 236 (345)
T ss_pred HHHHHHHcCCeEEEEccccCCCc--------h---------HHHHHHHHHHHHHCCCEEEEEecccccCCceeeeeEEEE
Confidence 55556678999999985432111 0 13344566778899999876422112222 344557889
Q ss_pred ccCCcEEEE
Q 025863 185 GSDGKLIAK 193 (247)
Q Consensus 185 ~p~G~il~~ 193 (247)
+|+|+++..
T Consensus 237 dp~G~vla~ 245 (345)
T PRK13286 237 GFDGRTLGE 245 (345)
T ss_pred CCCCcEEEe
Confidence 999998764
No 60
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=75.88 E-value=28 Score=30.26 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=42.9
Q ss_pred HHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeee------cCCeeEEE
Q 025863 107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPER------SGDRLYNT 180 (247)
Q Consensus 107 i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~------~~~~~yNs 180 (247)
.+..+.+|+|+|+.|=.+..... +... .. .+.+...++.-|.+++++++.- .... .+..++=.
T Consensus 159 ~r~~a~~ga~lil~ps~~~~~~~-~~~~---~~------~~~~~~~~~~rA~en~~~vv~a-n~~G~~~~~~~~~~~~G~ 227 (279)
T TIGR03381 159 ARAMALMGAEVLFYPTAIGSEPH-DPDL---DS------RDHWQRVMQGHAAANLVPVVAA-NRIGTEVGDGGEQTFYGS 227 (279)
T ss_pred HHHHHHcCCCEEEecCccCCCCc-cccc---cc------HHHHHHHHHHHHHhCCCeEEEE-ecccccCCCCCcceEeee
Confidence 34555689999999965432110 0000 00 1233444556688899988754 2221 12234456
Q ss_pred EEEEccCCcEEE
Q 025863 181 CCVFGSDGKLIA 192 (247)
Q Consensus 181 a~li~p~G~il~ 192 (247)
+.+++|+|+++.
T Consensus 228 S~i~~p~G~il~ 239 (279)
T TIGR03381 228 SFIADHTGELVA 239 (279)
T ss_pred EEEECCCCcEee
Confidence 788999999874
No 61
>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional
Probab=73.59 E-value=13 Score=32.59 Aligned_cols=58 Identities=10% Similarity=0.110 Sum_probs=38.7
Q ss_pred cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEE
Q 025863 94 ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVG 166 (247)
Q Consensus 94 ~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~ 166 (247)
.+..+..+.+.+..+...++|..+++|||..-+... .+ .++-.-.-.+|.+.++.|+-
T Consensus 119 ~~~~~~~~~l~~~~~~l~~~g~sv~IFPEGTRs~~g---------~l------~~Fk~Ga~~lA~~~~~PIvP 176 (245)
T PRK15018 119 NNRTKAHGTIAEVVNHFKKRRISIWMFPEGTRSRGR---------GL------LPFKTGAFHAAIAAGVPIIP 176 (245)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEECCccCCCCC---------CC------CCccHHHHHHHHHcCCCEEE
Confidence 355566667777777777778999999998764221 00 13344466678888998864
No 62
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=71.27 E-value=26 Score=29.71 Aligned_cols=68 Identities=24% Similarity=0.331 Sum_probs=43.8
Q ss_pred HHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeec-CCeeEEEEEEEcc
Q 025863 108 EEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERS-GDRLYNTCCVFGS 186 (247)
Q Consensus 108 ~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~-~~~~yNsa~li~p 186 (247)
+.+...|+|+|+.|=.+.... . .......+..|.+++++++.-+..-.. +..++-...+++|
T Consensus 153 ~~~~~~g~dli~~ps~~~~~~-----------~------~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~G~S~i~~p 215 (253)
T cd07197 153 RELALKGADIILVPAAWPTAR-----------R------EHWELLLRARAIENGVYVVAANRVGEEGGLEFAGGSMIVDP 215 (253)
T ss_pred HHHHHCCCcEEEECCcCCCcc-----------h------HHHHHHHHHHHHHhCCeEEEecCCCCCCCccccceeEEECC
Confidence 334567999999998754311 0 145566777889999998764221111 2245556788899
Q ss_pred CCcEEE
Q 025863 187 DGKLIA 192 (247)
Q Consensus 187 ~G~il~ 192 (247)
+|+++.
T Consensus 216 ~G~~~~ 221 (253)
T cd07197 216 DGEVLA 221 (253)
T ss_pred CCceee
Confidence 998764
No 63
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=70.91 E-value=24 Score=30.29 Aligned_cols=70 Identities=17% Similarity=0.242 Sum_probs=40.4
Q ss_pred HHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecC-CeeEEEEEEE
Q 025863 106 AIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSG-DRLYNTCCVF 184 (247)
Q Consensus 106 ~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~-~~~yNsa~li 184 (247)
..+..+.+|+|+|+.|=.|.. . . . +.+....+.-|.+++++++.-...-.++ ..++=.+.++
T Consensus 151 ~~r~~~~~ga~ll~~ps~~~~-~---~-----~--------~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~G~S~ii 213 (253)
T cd07583 151 LFRKLALEGAEILFVPAEWPA-A---R-----I--------EHWRTLLRARAIENQAFVVACNRVGTDGGNEFGGHSMVI 213 (253)
T ss_pred HHHHHHHcCCcEEEECCCCCC-C---c-----h--------HHHHHHHHHHHHHhCCEEEEEcCcccCCCceecceeEEE
Confidence 455566789999999954321 0 0 0 1222334566788999886431111122 2334445778
Q ss_pred ccCCcEEE
Q 025863 185 GSDGKLIA 192 (247)
Q Consensus 185 ~p~G~il~ 192 (247)
+|+|+++.
T Consensus 214 ~p~G~il~ 221 (253)
T cd07583 214 DPWGEVLA 221 (253)
T ss_pred CCCchhhe
Confidence 99998764
No 64
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=70.47 E-value=26 Score=30.02 Aligned_cols=69 Identities=19% Similarity=0.229 Sum_probs=40.7
Q ss_pred HHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEc
Q 025863 106 AIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFG 185 (247)
Q Consensus 106 ~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~ 185 (247)
..+..+.+|+|+|+.|=.|..... . ...+....+..|.+++++++.- . ..+..+.=.+.+++
T Consensus 155 ~~~~~~~~ga~lil~ps~~~~~~~---------~------~~~~~~~~~~rA~en~~~vv~~-n--~~g~~~~G~S~i~~ 216 (255)
T cd07581 155 LARALALAGADVIVVPAAWVAGPG---------K------EEHWETLLRARALENTVYVAAA-G--QAGPRGIGRSMVVD 216 (255)
T ss_pred HHHHHHHCCCcEEEECCcccCCCC---------c------hHHHHHHHHHHHHHhCCEEEEE-c--CcCCCcccceEEEC
Confidence 345555679999999954421110 0 0134455667788999998753 1 11222222457889
Q ss_pred cCCcEEE
Q 025863 186 SDGKLIA 192 (247)
Q Consensus 186 p~G~il~ 192 (247)
|+|+++.
T Consensus 217 p~G~i~~ 223 (255)
T cd07581 217 PLGVVLA 223 (255)
T ss_pred CCcceee
Confidence 9998765
No 65
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=70.11 E-value=20 Score=33.31 Aligned_cols=67 Identities=16% Similarity=0.093 Sum_probs=39.5
Q ss_pred HHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeec---------------
Q 025863 109 EAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERS--------------- 173 (247)
Q Consensus 109 ~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~--------------- 173 (247)
..+.+|||||+.|=.|.... . + ..+...++.-|-+++++++.-...-.+
T Consensus 236 ~la~~GAdiil~Psa~~~~~--~------~--------~~w~~~~rarAieN~~fVv~~NrvG~e~~~~~~~~~~g~~~~ 299 (363)
T cd07587 236 MYGLNGAEIVFNPSATVGAL--S------E--------PMWPIEARNAAIANSYFTVGINRVGTEVFPNEFTSGDGKPAH 299 (363)
T ss_pred HHHHcCCcEEEECCCcCCCC--c------h--------HHHHHHHHHHHHhcCcEEEEeccccccccccccccccccccc
Confidence 34567999999996542111 0 0 122344566788999998753211011
Q ss_pred --CCeeEEEEEEEccCCcEE
Q 025863 174 --GDRLYNTCCVFGSDGKLI 191 (247)
Q Consensus 174 --~~~~yNsa~li~p~G~il 191 (247)
...+|=.+++++|+|+++
T Consensus 300 ~~~~~f~G~S~Ii~P~G~il 319 (363)
T cd07587 300 KDFGHFYGSSYVAAPDGSRT 319 (363)
T ss_pred cccccccceeEEECCCCCCc
Confidence 023566788999999864
No 66
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=69.65 E-value=41 Score=29.36 Aligned_cols=79 Identities=14% Similarity=0.142 Sum_probs=43.0
Q ss_pred HHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeec-----CCeeEEE
Q 025863 106 AIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERS-----GDRLYNT 180 (247)
Q Consensus 106 ~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~-----~~~~yNs 180 (247)
..+.....|+|+++.|=.+. +...+....... .+.+...++..|.+++++++.-...-.+ +-.++=.
T Consensus 159 ~~r~~~~~gadlil~ps~~~--~~~~~~~~~~~~------~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~~~~~G~ 230 (284)
T cd07573 159 AARLMALQGAEILFYPTAIG--SEPQEPPEGLDQ------RDAWQRVQRGHAIANGVPVAAVNRVGVEGDPGSGITFYGS 230 (284)
T ss_pred HHHHHHHCCCCEEEecCccc--CCCCCccccCCc------hHHHHHHHHHHHHHcCceEEEeccccccCCCCCCceeece
Confidence 34455678999999995542 211110000000 1234445566788999998753221111 2233445
Q ss_pred EEEEccCCcEEE
Q 025863 181 CCVFGSDGKLIA 192 (247)
Q Consensus 181 a~li~p~G~il~ 192 (247)
+.+++|+|+++.
T Consensus 231 S~i~~p~G~i~~ 242 (284)
T cd07573 231 SFIADPFGEILA 242 (284)
T ss_pred eEEECCCCCeee
Confidence 678999999764
No 67
>TIGR00530 AGP_acyltrn 1-acyl-sn-glycerol-3-phosphate acyltransferases. 1-acyl-sn-glycerol-3-phosphate acyltransferase is also called 1-AGP acyltransferase, lysophosphatidic acid acyltransferase, and LPA acyltransferase.
Probab=69.28 E-value=20 Score=27.03 Aligned_cols=52 Identities=23% Similarity=0.160 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEE
Q 025863 100 IAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVG 166 (247)
Q Consensus 100 ~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~ 166 (247)
.....+.+.++.++|..+++|||...... ... -++..-...+|++.|+.++.
T Consensus 75 ~~~~~~~~~~~l~~g~~v~ifPeG~~~~~--~~~-------------~~f~~g~~~la~~~~~pvvp 126 (130)
T TIGR00530 75 IATALKAAIEVLKQGRSIGVFPEGTRSRG--RDI-------------LPFKKGAFHIAIKAGVPILP 126 (130)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCC--CCC-------------CCcchhHHHHHHHcCCCEEe
Confidence 33444445556677889999999975311 110 12334466678888988864
No 68
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=68.73 E-value=24 Score=30.71 Aligned_cols=64 Identities=16% Similarity=0.172 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEe
Q 025863 96 KERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGG 167 (247)
Q Consensus 96 ~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~G 167 (247)
.++.++.+.+.++.|+.-|++.|++.-.. .++... ..+..+.. -+.++.+.+.|+++|+.+.+=
T Consensus 85 r~~~~~~~~~~i~~a~~lGa~~i~~~~~~-~~~~~~-~~~~~~~~------~~~l~~l~~~a~~~gv~l~iE 148 (275)
T PRK09856 85 RRESLDMIKLAMDMAKEMNAGYTLISAAH-AGYLTP-PNVIWGRL------AENLSELCEYAENIGMDLILE 148 (275)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEcCCC-CCCCCC-HHHHHHHH------HHHHHHHHHHHHHcCCEEEEe
Confidence 45678899999999999999998886542 233211 11111221 267788899999999988643
No 69
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=68.34 E-value=44 Score=29.30 Aligned_cols=71 Identities=11% Similarity=0.061 Sum_probs=40.4
Q ss_pred HHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecC-----CeeEEE
Q 025863 106 AIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSG-----DRLYNT 180 (247)
Q Consensus 106 ~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~-----~~~yNs 180 (247)
..+..+.+|+||++.|=.+..++.. . .+....+.-|.+++++++.- .....+ ..++=.
T Consensus 170 ~~r~la~~Ga~li~~ps~~~~~~~~-------~---------~~~~~~~~rA~en~~~vv~~-N~~G~~~~~~~~~~~G~ 232 (287)
T cd07568 170 GWRALGLNGAEIVFNPSATVAGLSE-------Y---------LWKLEQPAAAVANGYFVGAI-NRVGTEAPWNIGEFYGS 232 (287)
T ss_pred HHHHHHHCCCeEEEECCcCCCCCch-------h---------hhHHHHHHHHHHCCcEEEEe-ccccccCCCccceEece
Confidence 3445557899999999654322210 0 11112345567888888632 211111 244556
Q ss_pred EEEEccCCcEEEE
Q 025863 181 CCVFGSDGKLIAK 193 (247)
Q Consensus 181 a~li~p~G~il~~ 193 (247)
+.+++|+|+++..
T Consensus 233 S~ii~p~G~il~~ 245 (287)
T cd07568 233 SYFVDPRGQFVAS 245 (287)
T ss_pred eEEECCCceEEEe
Confidence 7889999998753
No 70
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=68.14 E-value=35 Score=29.42 Aligned_cols=66 Identities=18% Similarity=0.206 Sum_probs=38.5
Q ss_pred HHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeee-eee----cCCeeEEEE
Q 025863 107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSI-PER----SGDRLYNTC 181 (247)
Q Consensus 107 i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~-~e~----~~~~~yNsa 181 (247)
.+..+..|||+|+.|-.+...+ ....++.-|.+++++++.-.. ... ++..+.=.+
T Consensus 150 ~r~~~~~Gadli~~ps~~~~~~--------------------~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~G~S 209 (259)
T cd07577 150 ARTLALKGADIIAHPANLVLPY--------------------CPKAMPIRALENRVFTITANRIGTEERGGETLRFIGKS 209 (259)
T ss_pred HHHHHHcCCCEEEECCccCCch--------------------hhhhhhHhhhhcCceEEEEecCcccCCCCCCceEeeee
Confidence 3445568999999996543110 112245567789999875311 111 111233456
Q ss_pred EEEccCCcEEE
Q 025863 182 CVFGSDGKLIA 192 (247)
Q Consensus 182 ~li~p~G~il~ 192 (247)
.+++|+|+++.
T Consensus 210 ~i~~p~G~i~~ 220 (259)
T cd07577 210 QITSPKGEVLA 220 (259)
T ss_pred EEECCCCCEEe
Confidence 88999999864
No 71
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=66.93 E-value=45 Score=29.06 Aligned_cols=66 Identities=20% Similarity=0.334 Sum_probs=44.4
Q ss_pred HHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecC--CeeEEEEEEEccCC
Q 025863 111 AEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSG--DRLYNTCCVFGSDG 188 (247)
Q Consensus 111 a~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~--~~~yNsa~li~p~G 188 (247)
+..||++|+.|-.+..... + ..+...++.-|-+++++++.....-.++ ..++-.+++++|.|
T Consensus 163 a~~Gaeii~~p~a~~~~~~--------~--------~~w~~l~~arA~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G 226 (274)
T COG0388 163 ALGGAELLLVPAAWPAERG--------L--------DHWEVLLRARAIENQVYVLAANRAGFDGAGLEFCGHSAIIDPDG 226 (274)
T ss_pred HhcCCeEEEEcCCCCCccc--------H--------HHHHHHHHHHhhhcCceEEEecccCCCCCccEEecceEEECCCc
Confidence 4458999999998875432 0 1334446667789999998653222222 35777889999999
Q ss_pred cEEE
Q 025863 189 KLIA 192 (247)
Q Consensus 189 ~il~ 192 (247)
+++.
T Consensus 227 ~v~~ 230 (274)
T COG0388 227 EVLA 230 (274)
T ss_pred cEEe
Confidence 8654
No 72
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=66.26 E-value=31 Score=30.07 Aligned_cols=63 Identities=19% Similarity=0.207 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEE
Q 025863 96 KERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVG 166 (247)
Q Consensus 96 ~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~ 166 (247)
.++.++.+++.++.|..-|++.|+++-. ..+.........+.. -+.++.+.+.|+++|+.+.+
T Consensus 89 r~~~~~~~~~~i~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~------~~~l~~l~~~a~~~gv~l~l 151 (284)
T PRK13210 89 RERALEIMKKAIRLAQDLGIRTIQLAGY--DVYYEEKSEETRQRF------IEGLAWAVEQAAAAQVMLAV 151 (284)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEECCc--ccccccccHHHHHHH------HHHHHHHHHHHHHhCCEEEE
Confidence 3457888999999999999999998621 111111111111111 25567788889999998876
No 73
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=65.94 E-value=50 Score=29.24 Aligned_cols=70 Identities=13% Similarity=0.047 Sum_probs=41.1
Q ss_pred HHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCC-----eeE-E
Q 025863 106 AIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGD-----RLY-N 179 (247)
Q Consensus 106 ~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~-----~~y-N 179 (247)
..+..+.+|+|||+.|=.+..... . ......++.-|.+++++++.- ....+++ ..| =
T Consensus 181 ~~r~la~~Gadlil~psa~~~~~~--------~--------~~~~~~~~arA~en~~~vv~a-N~~G~~~~~~~~~~~~G 243 (294)
T cd07582 181 VARGLAMNGAEVLLRSSSEVPSVE--------L--------DPWEIANRARALENLAYVVSA-NSGGIYGSPYPADSFGG 243 (294)
T ss_pred HHHHHHHCCCcEEEEcCCCCCCcc--------h--------hhHHHHHHHHHHhcCCEEEEe-cccccCcccccCceecc
Confidence 345556789999999976643220 0 122234566778899998753 2211111 123 3
Q ss_pred EEEEEccCCcEEE
Q 025863 180 TCCVFGSDGKLIA 192 (247)
Q Consensus 180 sa~li~p~G~il~ 192 (247)
.+.+++|+|+++.
T Consensus 244 ~S~ivdp~G~vla 256 (294)
T cd07582 244 GSMIVDYKGRVLA 256 (294)
T ss_pred eeEEECCCCCEEE
Confidence 4677899999874
No 74
>PLN02798 nitrilase
Probab=64.46 E-value=37 Score=29.98 Aligned_cols=71 Identities=15% Similarity=0.308 Sum_probs=41.2
Q ss_pred HHHHHH-HCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeee-ee-cCCeeEEEEE
Q 025863 106 AIEEAA-EKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIP-ER-SGDRLYNTCC 182 (247)
Q Consensus 106 ~i~~Aa-~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~-e~-~~~~~yNsa~ 182 (247)
..+..+ ..|+|+|+.|=.+.... .. ..+...++.-|-+++++++.-... +. ++..++=...
T Consensus 171 ~~r~~a~~~Gadlil~ps~~~~~~---------~~-------~~~~~~~~~rAien~~~vv~an~~G~~~~~~~~~G~S~ 234 (286)
T PLN02798 171 LYQQLRFEHGAQVLLVPSAFTKPT---------GE-------AHWEVLLRARAIETQCYVIAAAQAGKHNEKRESYGHAL 234 (286)
T ss_pred HHHHHHHhCCCcEEEECCcCCCCC---------cH-------HHHHHHHHHHHHHhCCEEEEecccCcCCCCceeeeeeE
Confidence 345545 78999999997543211 00 122333566677889988763111 11 1223445568
Q ss_pred EEccCCcEEE
Q 025863 183 VFGSDGKLIA 192 (247)
Q Consensus 183 li~p~G~il~ 192 (247)
+++|+|+++.
T Consensus 235 ii~p~G~il~ 244 (286)
T PLN02798 235 IIDPWGTVVA 244 (286)
T ss_pred EECCCccchh
Confidence 8899999864
No 75
>PLN02747 N-carbamolyputrescine amidase
Probab=63.36 E-value=71 Score=28.20 Aligned_cols=78 Identities=18% Similarity=0.243 Sum_probs=43.4
Q ss_pred HHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeee-e-e----cC---Ce
Q 025863 106 AIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIP-E-R----SG---DR 176 (247)
Q Consensus 106 ~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~-e-~----~~---~~ 176 (247)
..+..+.+|+|+|+.|=.+..... +.+ ... ...+...++..|.+++++++.-... + . .+ ..
T Consensus 164 ~~r~~~~~Ga~lil~ps~~~~~~~-~~~---~~~------~~~~~~~~~~rA~en~~~vv~~N~~G~~~~~~~~g~~~~~ 233 (296)
T PLN02747 164 AARAMVLQGAEVLLYPTAIGSEPQ-DPG---LDS------RDHWKRVMQGHAGANLVPLVASNRIGTEILETEHGPSKIT 233 (296)
T ss_pred HHHHHHHCCCCEEEEeCccCCCCc-ccc---cch------HHHHHHHHHHHHHHcCCeEEEEecccccccccccCCcCce
Confidence 345556789999999977632110 000 000 0133445667788889988653211 1 0 11 12
Q ss_pred eEEEEEEEccCCcEEEE
Q 025863 177 LYNTCCVFGSDGKLIAK 193 (247)
Q Consensus 177 ~yNsa~li~p~G~il~~ 193 (247)
++=.+.+++|+|+++..
T Consensus 234 ~~G~S~i~~p~G~vl~~ 250 (296)
T PLN02747 234 FYGGSFIAGPTGEIVAE 250 (296)
T ss_pred EeeeeEEECCCCCEeec
Confidence 34456788999998753
No 76
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=61.45 E-value=46 Score=29.12 Aligned_cols=63 Identities=16% Similarity=0.128 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEE
Q 025863 96 KERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVG 166 (247)
Q Consensus 96 ~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~ 166 (247)
.++.++.+++.++.|..-|++.|+++.... .+... ..+..+.. -+.++.+.+.|+++|+.+.+
T Consensus 89 r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~-~~~~~-~~~~~~~~------~~~l~~l~~~A~~~Gv~l~l 151 (279)
T TIGR00542 89 RQQGLEIMEKAIQLARDLGIRTIQLAGYDV-YYEEH-DEETRRRF------REGLKEAVELAARAQVTLAV 151 (279)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEecCccc-ccCcC-CHHHHHHH------HHHHHHHHHHHHHcCCEEEE
Confidence 345677889999999999999999874211 11111 11111111 25667788889999998865
No 77
>cd07990 LPLAT_LCLAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as Lysocardiolipin acyltransferase 1 (LCLAT1) or 1-acyl-sn-glycerol-3-phosphate acyltransferase and similar proteins.
Probab=60.69 E-value=24 Score=29.20 Aligned_cols=51 Identities=14% Similarity=0.140 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHC--CCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEE
Q 025863 97 ERNIAHARRAIEEAAEK--GAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVG 166 (247)
Q Consensus 97 ~~n~~~i~~~i~~Aa~~--gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~ 166 (247)
++..+.+.+.++...+. +..+++|||..-. . ....+...+.|++.++.++-
T Consensus 85 ~~d~~~i~~~~~~l~~~~~~~~lviFPEGTr~--~-----------------~~~~~~~~~~a~k~~~p~l~ 137 (193)
T cd07990 85 EKDEKTIKRQLKRLKDSPEPFWLLIFPEGTRF--T-----------------EEKKERSQEFAEKNGLPPLK 137 (193)
T ss_pred HHhHHHHHHHHHHHhcCCCCcEEEEeCcccCC--C-----------------HHHHHHHHHHHHHcCCCCcc
Confidence 34455666666666543 7889999998642 0 12233444788888887764
No 78
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=60.36 E-value=46 Score=28.73 Aligned_cols=67 Identities=16% Similarity=0.151 Sum_probs=38.1
Q ss_pred HHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecC-CeeEEEEEEEc
Q 025863 107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSG-DRLYNTCCVFG 185 (247)
Q Consensus 107 i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~-~~~yNsa~li~ 185 (247)
.+..+.+|+|+++.|=.|..+.. +. ..+..-|.+++++++.-...-.++ ..++=...+++
T Consensus 155 ~r~~~~~ga~ll~~ps~~~~~~~------------------~~-~~~~~rA~en~~~vv~an~~G~~~~~~~~G~S~ii~ 215 (258)
T cd07578 155 ARLLALGGADVICHISNWLAERT------------------PA-PYWINRAFENGCYLIESNRWGLERGVQFSGGSCIIE 215 (258)
T ss_pred HHHHHHcCCCEEEEcCCCCCCCC------------------cc-hHHHHhhhcCCeEEEEecceeccCCcceeeEEEEEC
Confidence 34445689999999965432110 00 112345678888887542211112 22344568899
Q ss_pred cCCcEEE
Q 025863 186 SDGKLIA 192 (247)
Q Consensus 186 p~G~il~ 192 (247)
|+|+++.
T Consensus 216 p~G~il~ 222 (258)
T cd07578 216 PDGTIQA 222 (258)
T ss_pred CCCcEee
Confidence 9998764
No 79
>PLN00202 beta-ureidopropionase
Probab=59.94 E-value=45 Score=31.51 Aligned_cols=67 Identities=13% Similarity=0.071 Sum_probs=40.1
Q ss_pred HHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeec----------C-----
Q 025863 110 AAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERS----------G----- 174 (247)
Q Consensus 110 Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~----------~----- 174 (247)
.+.+|||+|+.|=.+..... + ..+...++.-|.+++++++.-...-.+ +
T Consensus 258 la~~GAdiIl~Psa~~~~~~--------~--------~~w~~~~raRAiEN~~fvv~aNrvG~~~~~~~~~~~~g~~~~~ 321 (405)
T PLN00202 258 FGLNGAEIVFNPSATVGDLS--------E--------PMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHK 321 (405)
T ss_pred HHHCCCcEEEECCCCCCccC--------H--------HHHHHHHHHHHHhcCCEEEEecccccccccccccccccccccc
Confidence 34679999999965431110 0 123344667788899988653211111 1
Q ss_pred --CeeEEEEEEEccCCcEEE
Q 025863 175 --DRLYNTCCVFGSDGKLIA 192 (247)
Q Consensus 175 --~~~yNsa~li~p~G~il~ 192 (247)
..++=.+++++|+|+++.
T Consensus 322 ~~~~f~G~S~Iv~P~G~vla 341 (405)
T PLN00202 322 DFGHFYGSSHFSAPDASCTP 341 (405)
T ss_pred ccccccceeEEEcCCCCEec
Confidence 235566789999999764
No 80
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=59.30 E-value=47 Score=29.00 Aligned_cols=63 Identities=17% Similarity=0.185 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEE
Q 025863 96 KERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVG 166 (247)
Q Consensus 96 ~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~ 166 (247)
.++.++.+++.++.|+.-|+..|+++-. ..++.. ......+.. -+.++.+.+.|+++|+.+.+
T Consensus 94 r~~~~~~~~~~i~~a~~lG~~~i~~~~~-~~~~~~-~~~~~~~~~------~~~l~~l~~~A~~~GV~i~i 156 (283)
T PRK13209 94 RAQALEIMRKAIQLAQDLGIRVIQLAGY-DVYYEQ-ANNETRRRF------IDGLKESVELASRASVTLAF 156 (283)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCc-cccccc-cHHHHHHHH------HHHHHHHHHHHHHhCCEEEE
Confidence 4556788999999999999999998521 101111 111111111 25567788888999998765
No 81
>PRK13981 NAD synthetase; Provisional
Probab=57.30 E-value=51 Score=32.13 Aligned_cols=73 Identities=26% Similarity=0.354 Sum_probs=43.2
Q ss_pred HHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCe-eEEEEEEE
Q 025863 106 AIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDR-LYNTCCVF 184 (247)
Q Consensus 106 ~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~-~yNsa~li 184 (247)
..+..+..|+|+|+.|=.+ +|.... . ......++..|.+++++++.-...-.+++. +.-.++++
T Consensus 153 ~~r~la~~Gadlil~psa~--~~~~~~------~-------~~~~~~~~~rA~En~~~vv~aN~vG~~~~~~f~G~S~i~ 217 (540)
T PRK13981 153 PAETLAEAGAELLLVPNAS--PYHRGK------P-------DLREAVLRARVRETGLPLVYLNQVGGQDELVFDGASFVL 217 (540)
T ss_pred HHHHHHHCCCcEEEEcCCC--cccCCc------H-------HHHHHHHHHHHHHhCCeEEEEecccCCCceEEeCceEEE
Confidence 3344556899999999432 232111 0 123456788899999988754221112222 33456888
Q ss_pred ccCCcEEEE
Q 025863 185 GSDGKLIAK 193 (247)
Q Consensus 185 ~p~G~il~~ 193 (247)
+|+|+++..
T Consensus 218 dp~G~il~~ 226 (540)
T PRK13981 218 NADGELAAR 226 (540)
T ss_pred CCCCCEeee
Confidence 999988753
No 82
>PF01553 Acyltransferase: Acyltransferase; InterPro: IPR002123 This family contains acyltransferases involved in phospholipid biosynthesis and other proteins of unknown function []. This domain is found in tafazzins, defects in which are the cause of Barth syndrome; a severe inherited disorder which is often fatal in childhood and is characterised by cardiac and skeletal abnormalities. Phospholipid/glycerol acyltransferase is not found in the viruses or the archaea and is under represented in the bacteria. Bacterial glycerol-phosphate acyltransferases are involved in membrane biogenesis since they use fatty acid chains to form the first membrane phospholipids [].; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1IUQ_A 1K30_A.
Probab=57.14 E-value=29 Score=26.12 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHCCCeEEEcCCCCC
Q 025863 100 IAHARRAIEEAAEKGAKLILLPEIWN 125 (247)
Q Consensus 100 ~~~i~~~i~~Aa~~gadLVVfPE~~l 125 (247)
.....+.+.++.+.|--+++|||...
T Consensus 77 ~~~~~~~~~~~l~~~~~i~ifPEG~~ 102 (132)
T PF01553_consen 77 NRKALKDIKEILRKGGSIVIFPEGTR 102 (132)
T ss_dssp HHHHHHHHHHHHHC---EEE-TT-S-
T ss_pred cchhHHHHHHHhhhcceeeecCCccC
Confidence 33344444445555555999999855
No 83
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=55.56 E-value=61 Score=26.50 Aligned_cols=63 Identities=21% Similarity=0.228 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEE
Q 025863 95 DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIV 165 (247)
Q Consensus 95 d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv 165 (247)
+.++-.+.+.++++.+.+.++.+|++-=.....+.... ...+. ...+.+.++++|+++++.++
T Consensus 88 ~~~~~~~nl~~ii~~~~~~~~~~il~tp~~~~~~~~~~--~~~~~------~~~~~~~~~~~a~~~~~~~v 150 (198)
T cd01821 88 PYTTYKEYLRRYIAEARAKGATPILVTPVTRRTFDEGG--KVEDT------LGDYPAAMRELAAEEGVPLI 150 (198)
T ss_pred cHHHHHHHHHHHHHHHHHCCCeEEEECCccccccCCCC--ccccc------chhHHHHHHHHHHHhCCCEE
Confidence 45556666777777777778888876211111111110 01111 24778899999999999875
No 84
>PLN02504 nitrilase
Probab=55.42 E-value=57 Score=30.03 Aligned_cols=67 Identities=10% Similarity=0.025 Sum_probs=40.5
Q ss_pred HHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeee--------------
Q 025863 106 AIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPE-------------- 171 (247)
Q Consensus 106 ~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e-------------- 171 (247)
..+..+.+|+||++.|=.+. . ..+...++.-|.+++++++.-...-
T Consensus 194 ~~r~la~~Gadii~~p~~~~-----------~---------~~w~~~~rarA~En~~~Vv~aN~vg~~~~~~~~~~~~~~ 253 (346)
T PLN02504 194 LRTAMYAKGIEIYCAPTADS-----------R---------ETWQASMRHIALEGGCFVLSANQFCRRKDYPPPPEYLFS 253 (346)
T ss_pred HHHHHHHCCCeEEEECCCCC-----------c---------hhHHHHHHHHHHccCcEEEEecccccccccCcccccccc
Confidence 34445578999999984321 0 1233346667889999987542210
Q ss_pred -ec-----C-CeeEEEEEEEccCCcEEE
Q 025863 172 -RS-----G-DRLYNTCCVFGSDGKLIA 192 (247)
Q Consensus 172 -~~-----~-~~~yNsa~li~p~G~il~ 192 (247)
.+ + -.++=.+++++|+|+++.
T Consensus 254 G~~~~~~~~~~~~~G~S~IvdP~G~vla 281 (346)
T PLN02504 254 GTEEDLTPDSIVCAGGSVIISPSGTVLA 281 (346)
T ss_pred cccccccccccccCcceEEECCCCCEec
Confidence 00 1 123445789999999874
No 85
>smart00563 PlsC Phosphate acyltransferases. Function in phospholipid biosynthesis and have either glycerolphosphate, 1-acylglycerolphosphate, or 2-acylglycerolphosphoethanolamine acyltransferase activities. Tafazzin, the product of the gene mutated in patients with Barth syndrome, is a member of this family.
Probab=52.87 E-value=40 Score=24.49 Aligned_cols=28 Identities=29% Similarity=0.310 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEcCCCCCC
Q 025863 98 RNIAHARRAIEEAAEKGAKLILLPEIWNS 126 (247)
Q Consensus 98 ~n~~~i~~~i~~Aa~~gadLVVfPE~~l~ 126 (247)
.+.+.+.+.++ +.+.|..+++|||....
T Consensus 60 ~~~~~~~~~~~-~l~~~~~~~ifPeG~~~ 87 (118)
T smart00563 60 LARAALREAVR-LLRDGGWLLIFPEGTRS 87 (118)
T ss_pred HHHHHHHHHHH-HHhCCCEEEEeCCcccC
Confidence 34455555544 44678999999999764
No 86
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=52.80 E-value=1e+02 Score=27.34 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=24.3
Q ss_pred HHHHhcCcEEEEeee-eeecCCeeEEEEEEEccCCcEEE
Q 025863 155 EVARLLKITIVGGSI-PERSGDRLYNTCCVFGSDGKLIA 192 (247)
Q Consensus 155 ~~Ar~~~i~Iv~Gs~-~e~~~~~~yNsa~li~p~G~il~ 192 (247)
.-|.+++++++..+. -+.++..++=.+.+++|+|+++.
T Consensus 221 arA~en~~~vv~~n~~G~~~~~~~~G~S~ii~p~G~vla 259 (302)
T cd07569 221 AGAYQNGTWVVAAAKAGMEDGCDLIGGSCIVAPTGEIVA 259 (302)
T ss_pred hhhhcccceEEEeeccccCCCceEecceEEECCCCCEEE
Confidence 346688898875421 11223355666788999999874
No 87
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=52.78 E-value=72 Score=25.03 Aligned_cols=38 Identities=11% Similarity=0.090 Sum_probs=25.4
Q ss_pred EEEEEeccc--c-cCHHHHHHHHHHHHHHHHHCCCeEEEcC
Q 025863 84 KVGLCQLSV--T-ADKERNIAHARRAIEEAAEKGAKLILLP 121 (247)
Q Consensus 84 kValvQ~~i--~-~d~~~n~~~i~~~i~~Aa~~gadLVVfP 121 (247)
|+.++.+-. + ..+...+..+.++.++..+.++.+|-..
T Consensus 31 k~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is 71 (154)
T PRK09437 31 QRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGIS 71 (154)
T ss_pred CCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 345555542 2 4466667778888887777888888774
No 88
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=51.82 E-value=64 Score=28.50 Aligned_cols=84 Identities=14% Similarity=0.034 Sum_probs=42.6
Q ss_pred HHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhh--ccCCCC-hHHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEE
Q 025863 106 AIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDI--DAGGDA-SPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCC 182 (247)
Q Consensus 106 ~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~--~~~~~~-~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~ 182 (247)
..+..+..|||||+.|=.+...+... +....... ...... ....+.++.-|.+++++++.-. .......++=.+.
T Consensus 144 ~~r~~a~~Ga~ii~~psa~~~~~~~~-~~~~~~~~~~~~~~~~~~~~w~~~~aRA~EN~~~vv~aN-~~g~~~~~~G~S~ 221 (279)
T cd07579 144 AGRVLALRGCDLLACPAAIAIPFVGA-HAGTSVPQPYPIPTGADPTHWHLARVRAGENNVYFAFAN-VPDPARGYTGWSG 221 (279)
T ss_pred HHHHHHHCCCCEEEECCCcCCccccc-cccccccCCCCCcCccchhHHHHhHhHHhhCCeEEEEee-ccCCccccccccE
Confidence 34455578999999998764322210 00000000 000000 0122346677889999997642 2211122333356
Q ss_pred EEccCCcEE
Q 025863 183 VFGSDGKLI 191 (247)
Q Consensus 183 li~p~G~il 191 (247)
+++|+|.++
T Consensus 222 ii~P~G~v~ 230 (279)
T cd07579 222 VFGPDTFAF 230 (279)
T ss_pred EECCCeEEc
Confidence 889999764
No 89
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=50.92 E-value=99 Score=23.37 Aligned_cols=91 Identities=11% Similarity=0.087 Sum_probs=49.0
Q ss_pred EEEEEecc-cc-cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcC
Q 025863 84 KVGLCQLS-VT-ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLK 161 (247)
Q Consensus 84 kValvQ~~-i~-~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~ 161 (247)
|+.++.+- .+ ..+...+..+.++.++..+.++.+|...- ..+.. ....+.+++.+++++
T Consensus 24 k~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~---~~~~~----------------~~~~~~~~~~~~~~~ 84 (126)
T cd03012 24 KVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHS---PEFAF----------------ERDLANVKSAVLRYG 84 (126)
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEecc---Ccccc----------------ccCHHHHHHHHHHcC
Confidence 44555553 22 56677788888888877666777665421 00100 022344666777776
Q ss_pred cEEEEeeeeee-----cCCeeEEEEEEEccCCcEEEE
Q 025863 162 ITIVGGSIPER-----SGDRLYNTCCVFGSDGKLIAK 193 (247)
Q Consensus 162 i~Iv~Gs~~e~-----~~~~~yNsa~li~p~G~il~~ 193 (247)
+..-+.+-+.. -+-...-+.++|+++|+++..
T Consensus 85 ~~~p~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~ 121 (126)
T cd03012 85 ITYPVANDNDYATWRAYGNQYWPALYLIDPTGNVRHV 121 (126)
T ss_pred CCCCEEECCchHHHHHhCCCcCCeEEEECCCCcEEEE
Confidence 64322211111 011234567999999988644
No 90
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=49.80 E-value=65 Score=26.03 Aligned_cols=66 Identities=21% Similarity=0.197 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEe
Q 025863 96 KERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGG 167 (247)
Q Consensus 96 ~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~G 167 (247)
.+..++.+++.++.|..-|++.++++=...............+.+ -+.++.+.+.|+++|+.+++=
T Consensus 66 r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~------~~~l~~l~~~a~~~gv~i~lE 131 (213)
T PF01261_consen 66 REEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERL------AENLRELAEIAEEYGVRIALE 131 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHH------HHHHHHHHHHHHHHTSEEEEE
T ss_pred hHHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHH------HHHHHHHHhhhhhhcceEEEe
Confidence 345588888999989888999998883210011111111222222 267788888899999988653
No 91
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=48.53 E-value=70 Score=27.93 Aligned_cols=62 Identities=18% Similarity=0.142 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEE
Q 025863 96 KERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVG 166 (247)
Q Consensus 96 ~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~ 166 (247)
.+..++.+++.++.|..-|++.|++.-....+ .......+.. -+.++.+.+.|+++|+.+.+
T Consensus 80 r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~---~~~~~~~~~~------~~~l~~l~~~a~~~gi~l~l 141 (279)
T cd00019 80 REKSIERLKDEIERCEELGIRLLVFHPGSYLG---QSKEEGLKRV------IEALNELIDKAETKGVVIAL 141 (279)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCCCCCC---CCHHHHHHHH------HHHHHHHHHhccCCCCEEEE
Confidence 56678899999999999999998874332211 1111111111 24556666777788998875
No 92
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=47.98 E-value=1.1e+02 Score=23.18 Aligned_cols=28 Identities=21% Similarity=0.177 Sum_probs=18.0
Q ss_pred cCHHHHHHHHHHHHHHHHHCCCeEEEcC
Q 025863 94 ADKERNIAHARRAIEEAAEKGAKLILLP 121 (247)
Q Consensus 94 ~d~~~n~~~i~~~i~~Aa~~gadLVVfP 121 (247)
.-+...+..+.++.++..+.++++|...
T Consensus 37 p~C~~~~~~l~~~~~~~~~~~~~vv~is 64 (140)
T cd03017 37 PGCTKEACDFRDLYEEFKALGAVVIGVS 64 (140)
T ss_pred CchHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 3455556666666666666788887765
No 93
>cd07993 LPLAT_DHAPAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-phosphate O-acyltransferase 1) and similar proteins.
Probab=47.00 E-value=74 Score=26.61 Aligned_cols=26 Identities=23% Similarity=0.175 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCCCC
Q 025863 101 AHARRAIEEAAEKGAKLILLPEIWNS 126 (247)
Q Consensus 101 ~~i~~~i~~Aa~~gadLVVfPE~~l~ 126 (247)
+.+.+.++++.++|..+++|||..-+
T Consensus 88 ~~~~~~~~~~l~~g~~l~iFPEGtrs 113 (205)
T cd07993 88 AVLQEYVQELLKNGQPLEFFIEGTRS 113 (205)
T ss_pred HHHHHHHHHHHhCCceEEEEcCCCCC
Confidence 45556667777789999999999764
No 94
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=46.31 E-value=22 Score=31.72 Aligned_cols=48 Identities=15% Similarity=0.269 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcCcEEEEeeeeeecCCe-e---EEEEEEEccCCcEEEEEeccc
Q 025863 149 STAMLSEVARLLKITIVGGSIPERSGDR-L---YNTCCVFGSDGKLIAKHRKIH 198 (247)
Q Consensus 149 ~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~-~---yNsa~li~p~G~il~~Y~K~h 198 (247)
+.+.++++|+++.|+...| ++.+++. + ---.++++|+|+.+..|-+.+
T Consensus 211 T~eqvk~vak~yRVYfs~g--p~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~ 262 (280)
T KOG2792|consen 211 TTEQVKQVAKKYRVYFSTG--PKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNY 262 (280)
T ss_pred CHHHHHHHHHHhEEeeccC--CCCCCCCeeeeeeEEEEEECCCcceehhhcccC
Confidence 4578999999999999887 4332221 1 123589999999988877665
No 95
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=46.18 E-value=1e+02 Score=26.67 Aligned_cols=64 Identities=17% Similarity=0.249 Sum_probs=38.6
Q ss_pred CCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecC--CeeEEEEEEEccCCcE
Q 025863 113 KGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSG--DRLYNTCCVFGSDGKL 190 (247)
Q Consensus 113 ~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~--~~~yNsa~li~p~G~i 190 (247)
.|+|+++.|=.|.... . ..+...++.-|.+++++++.-...-.++ ..++=.+.+++|+|++
T Consensus 154 ~gad~i~~~s~~~~~~--------~---------~~~~~~~~aRA~En~~~vv~~n~~G~~~~~~~~~G~S~ivdP~G~v 216 (256)
T PRK10438 154 NDYDLALYVANWPAPR--------S---------LHWQTLLTARAIENQAYVAGCNRVGSDGNGHHYRGDSRIINPQGEI 216 (256)
T ss_pred cCCCEEEEecCCCCCc--------h---------HHHHHHHHHHHHhcCcEEEEecccccCCCCCEEcCceEEECCCCcE
Confidence 4799999987653111 0 1233345667889999987642211121 1233457889999998
Q ss_pred EEE
Q 025863 191 IAK 193 (247)
Q Consensus 191 l~~ 193 (247)
+..
T Consensus 217 l~~ 219 (256)
T PRK10438 217 IAT 219 (256)
T ss_pred EEE
Confidence 754
No 96
>PRK13287 amiF formamidase; Provisional
Probab=44.77 E-value=2e+02 Score=26.21 Aligned_cols=70 Identities=14% Similarity=0.036 Sum_probs=38.8
Q ss_pred HHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCC--eeEEEEEE
Q 025863 106 AIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGD--RLYNTCCV 183 (247)
Q Consensus 106 ~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~--~~yNsa~l 183 (247)
..+..+.+|||+++-|=.+.... . +.+.-..+.-|-+++++++.- ...-.++ .++=.+.+
T Consensus 173 ~~R~~a~~GAeill~~s~~~~~~------------~-----~~w~~~~~arA~en~~~vv~a-n~~G~~~~~~~~G~S~I 234 (333)
T PRK13287 173 MAREAAYKGANVMIRISGYSTQV------------R-----EQWILTNRSNAWQNLMYTASV-NLAGYDGVFYYFGEGQV 234 (333)
T ss_pred HHHHHHHCCCeEEEECCccCCcc------------h-----hHHHHHHHHHHHhCCcEEEEE-eccccCCCeeeeeeeEE
Confidence 44555668999999885432110 0 122222344566788887643 2222222 23344678
Q ss_pred EccCCcEEEE
Q 025863 184 FGSDGKLIAK 193 (247)
Q Consensus 184 i~p~G~il~~ 193 (247)
++|+|+++..
T Consensus 235 idp~G~vl~~ 244 (333)
T PRK13287 235 CNFDGTTLVQ 244 (333)
T ss_pred ECCCCcEEEe
Confidence 9999998754
No 97
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=44.10 E-value=74 Score=24.25 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=14.1
Q ss_pred EEEEEccCCcEEEEEe
Q 025863 180 TCCVFGSDGKLIAKHR 195 (247)
Q Consensus 180 sa~li~p~G~il~~Y~ 195 (247)
+.++|+++|+++..|+
T Consensus 126 ~~~lid~~G~i~~~~~ 141 (142)
T cd02968 126 AIYLVDPDGKLVRYYG 141 (142)
T ss_pred eEEEECCCCCEEEeec
Confidence 5899999999988875
No 98
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=43.79 E-value=1.5e+02 Score=23.36 Aligned_cols=72 Identities=15% Similarity=0.194 Sum_probs=42.4
Q ss_pred EEEEEecccc-----cCHHHHHHHHHHHHHHHHH--CCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHH
Q 025863 84 KVGLCQLSVT-----ADKERNIAHARRAIEEAAE--KGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEV 156 (247)
Q Consensus 84 kValvQ~~i~-----~d~~~n~~~i~~~i~~Aa~--~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~ 156 (247)
.+.+++...- .+.++..+.++++++.+.+ .++.+|+..=.-..+. .....+.+ ..+-+.++++
T Consensus 50 d~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~~~vi~~~~~p~~~~----~~~~~~~~------~~~n~~l~~~ 119 (169)
T cd01828 50 KAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKHFPNIKIVVQSILPVGEL----KSIPNEQI------EELNRQLAQL 119 (169)
T ss_pred CEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEecCCcCcc----CcCCHHHH------HHHHHHHHHH
Confidence 4555555431 3466667777777777766 6889888642211111 01111222 2566788889
Q ss_pred HHhcCcEEE
Q 025863 157 ARLLKITIV 165 (247)
Q Consensus 157 Ar~~~i~Iv 165 (247)
|++.++.++
T Consensus 120 a~~~~~~~i 128 (169)
T cd01828 120 AQQEGVTFL 128 (169)
T ss_pred HHHCCCEEE
Confidence 999998776
No 99
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=43.68 E-value=85 Score=28.11 Aligned_cols=72 Identities=21% Similarity=0.218 Sum_probs=45.9
Q ss_pred HHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccC
Q 025863 108 EEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSD 187 (247)
Q Consensus 108 ~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~ 187 (247)
..|...++++++|=|=+. |.+ .... ..+.+.+++++++.+.+|++.|....+-....+..+++. +
T Consensus 148 a~aL~~~P~lliLDEPt~-GLD-----p~~~--------~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~-~ 212 (293)
T COG1131 148 ALALLHDPELLILDEPTS-GLD-----PESR--------REIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILN-D 212 (293)
T ss_pred HHHHhcCCCEEEECCCCc-CCC-----HHHH--------HHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEe-C
Confidence 334456889999999543 221 1111 267888999999888778776554444344566666774 7
Q ss_pred CcEEEEE
Q 025863 188 GKLIAKH 194 (247)
Q Consensus 188 G~il~~Y 194 (247)
|+++..-
T Consensus 213 G~~~~~g 219 (293)
T COG1131 213 GKIIAEG 219 (293)
T ss_pred CEEEEeC
Confidence 8876543
No 100
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=43.13 E-value=83 Score=24.06 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhc-CcEEEEee
Q 025863 100 IAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLL-KITIVGGS 168 (247)
Q Consensus 100 ~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~-~i~Iv~Gs 168 (247)
-+++...+++..+.++|.|-|.=.-..+... . ..+..+.+.+..++. |+.+|.|+
T Consensus 51 g~~~~~~~~~l~~~~~d~IHlssC~~~~~~~--------~------~CP~~~~~~~~I~~~~gi~VV~GT 106 (107)
T PF08821_consen 51 GRKLVRRIKKLKKNGADVIHLSSCMVKGNPH--------G------PCPHIDEIKKIIEEKFGIEVVEGT 106 (107)
T ss_pred hhHHHHHHHHHHHCCCCEEEEcCCEecCCCC--------C------CCCCHHHHHHHHHHHhCCCEeeec
Confidence 3455566666668899999998766543310 0 124566666666555 99999885
No 101
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=43.00 E-value=2e+02 Score=25.40 Aligned_cols=82 Identities=15% Similarity=0.161 Sum_probs=47.3
Q ss_pred CCceEEEEEecccccC----HHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCC-CcchhhhhhccCCCChHHHHHHH
Q 025863 80 VAKFKVGLCQLSVTAD----KERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHD-SFPVYAEDIDAGGDASPSTAMLS 154 (247)
Q Consensus 80 ~~~~kValvQ~~i~~d----~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~-~~~~~~e~~~~~~~~~~~~~~l~ 154 (247)
|.++|||.+|+.--.. .....+++.++.+ .+|+|..|=+.-..-..+ |....--.+ .+.+.++.+.
T Consensus 1 ~~~ikva~~~L~gC~GC~~slldl~E~L~dll~-----~~div~~~~l~D~keiPEvDValVEGsV----~~ee~lE~v~ 71 (247)
T COG1941 1 MEKIKVATVWLTGCSGCHMSLLDLYEKLLDLLE-----DADIVYCPTLVDEKEIPEVDVALVEGSV----CDEEELELVK 71 (247)
T ss_pred CcceEEEEEEeccccchHHHHHhHHHHHHHhhh-----hhcEEEeecccccccCCcccEEEEeccc----CcHHHHHHHH
Confidence 4578999999986533 3333344444333 248887776544320000 100000111 1457788888
Q ss_pred HHHHhcCcEEEEeeee
Q 025863 155 EVARLLKITIVGGSIP 170 (247)
Q Consensus 155 ~~Ar~~~i~Iv~Gs~~ 170 (247)
++-++.++.+.+|+-.
T Consensus 72 ElRekakivVA~GsCA 87 (247)
T COG1941 72 ELREKAKIVVALGSCA 87 (247)
T ss_pred HHHHhCcEEEEEecch
Confidence 8888889999999654
No 102
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=42.54 E-value=71 Score=26.86 Aligned_cols=59 Identities=25% Similarity=0.327 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEE
Q 025863 98 RNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVG 166 (247)
Q Consensus 98 ~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~ 166 (247)
.+.+.+++..+ +.++|-.++||||...+..... +.+. + ..++..-...+|++.++.|+-
T Consensus 83 ~~~~~~~~~~~-~L~~G~~l~IFPEGtrs~~~~~-~g~~-~-------~~~fk~G~~~lA~~~~~pIvP 141 (210)
T cd07986 83 KNRESLREALR-HLKNGGALIIFPAGRVSTASPP-FGRV-S-------DRPWNPFVARLARKAKAPVVP 141 (210)
T ss_pred hhHHHHHHHHH-HHhCCCEEEEECCccccccccc-CCcc-c-------cCCccHHHHHHHHHHCCCEEE
Confidence 44444444444 3456789999999976533210 0000 0 013344566788889998874
No 103
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=42.27 E-value=1.1e+02 Score=27.04 Aligned_cols=73 Identities=15% Similarity=0.114 Sum_probs=40.5
Q ss_pred HHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeee-------------
Q 025863 106 AIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPER------------- 172 (247)
Q Consensus 106 ~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~------------- 172 (247)
..+.++.+|||+++.| +..++. . ... ...+...++.-|.+++++++.-...-.
T Consensus 165 ~~r~~a~~ga~ii~~~--~~~~~~-~----~~~-------~~~~~~~~~arAien~~~vv~~N~vG~~~~~~~~~~~~~~ 230 (297)
T cd07564 165 ARYALYAQGEQIHVAP--WPDFSP-Y----YLS-------REAWLAASRHYALEGRCFVLSACQVVTEEDIPADCEDDEE 230 (297)
T ss_pred HHHHHHHCCCeEEEEC--CCCccc-c----ccc-------HHHHHHHHHHHHHhcCCEEEEcccccChhHcccccccccc
Confidence 4455567899998864 211111 0 000 014445567778899999986311100
Q ss_pred ---cCCeeEEEEEEEccCCcEEE
Q 025863 173 ---SGDRLYNTCCVFGSDGKLIA 192 (247)
Q Consensus 173 ---~~~~~yNsa~li~p~G~il~ 192 (247)
+...++=.+.+++|+|+++.
T Consensus 231 ~~~~~~~~~G~S~iv~P~G~il~ 253 (297)
T cd07564 231 ADPLEVLGGGGSAIVGPDGEVLA 253 (297)
T ss_pred cccccccCCCceEEECCCCCeec
Confidence 01123445688999999863
No 104
>cd07988 LPLAT_ABO13168-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ABO13168. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Acinetobacter baumannii ATCC 17978 locus ABO13168 putative acyltransferase, and similar proteins.
Probab=41.96 E-value=63 Score=26.17 Aligned_cols=35 Identities=20% Similarity=0.063 Sum_probs=24.0
Q ss_pred CCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEE
Q 025863 114 GAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVG 166 (247)
Q Consensus 114 gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~ 166 (247)
+..++||||..-+.- +++..-...+|.+.++.|+-
T Consensus 95 ~~~l~IFPEGtR~~~------------------~~fk~G~~~lA~~~~~PIvP 129 (163)
T cd07988 95 EFVLAIAPEGTRSKV------------------DKWKTGFYHIARGAGVPILL 129 (163)
T ss_pred CcEEEEeCCCCCCCC------------------cChhhHHHHHHHHcCCCEEE
Confidence 457999999976531 12334466788889998874
No 105
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=41.38 E-value=96 Score=20.78 Aligned_cols=45 Identities=20% Similarity=0.175 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEe
Q 025863 102 HARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGG 167 (247)
Q Consensus 102 ~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~G 167 (247)
..+++++.|.+.|-+.|.+=|-... .....+.+.+++.++.++.|
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh~~~---------------------~~~~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDHGNL---------------------FGAVEFYKAAKKAGIKPIIG 60 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCCcc---------------------cCHHHHHHHHHHcCCeEEEE
Confidence 4678899999999999999886521 01123555667789999999
No 106
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=40.31 E-value=1.6e+02 Score=24.54 Aligned_cols=71 Identities=15% Similarity=0.161 Sum_probs=38.6
Q ss_pred HHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEcc-CC
Q 025863 110 AAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGS-DG 188 (247)
Q Consensus 110 Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p-~G 188 (247)
|...+++++++=|-+. +.+ .... ....+.+.++.++.+..+++-+....+-..+.+..+++.. +|
T Consensus 145 al~~~p~lllLDEPt~-~LD-----~~~~--------~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G 210 (220)
T cd03293 145 ALAVDPDVLLLDEPFS-ALD-----ALTR--------EQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPG 210 (220)
T ss_pred HHHcCCCEEEECCCCC-CCC-----HHHH--------HHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCC
Confidence 3345788888888433 121 1111 2556667777666666666543322222345566677754 68
Q ss_pred cEEEEE
Q 025863 189 KLIAKH 194 (247)
Q Consensus 189 ~il~~Y 194 (247)
+++...
T Consensus 211 ~i~~~~ 216 (220)
T cd03293 211 RIVAEV 216 (220)
T ss_pred EEEEEE
Confidence 876543
No 107
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=39.85 E-value=1.2e+02 Score=23.38 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=21.5
Q ss_pred cCHHHHHHHHHHHHHHHHHCCCeEEEcC
Q 025863 94 ADKERNIAHARRAIEEAAEKGAKLILLP 121 (247)
Q Consensus 94 ~d~~~n~~~i~~~i~~Aa~~gadLVVfP 121 (247)
..+...+..+.++.++..+.++++|...
T Consensus 42 ~~C~~~~~~l~~~~~~~~~~~v~vi~vs 69 (149)
T cd03018 42 PVCTKELCALRDSLELFEAAGAEVLGIS 69 (149)
T ss_pred ccHHHHHHHHHHHHHHHHhCCCEEEEec
Confidence 5566778888888887777788888775
No 108
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=38.82 E-value=1.1e+02 Score=27.35 Aligned_cols=76 Identities=21% Similarity=0.238 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecC-CeeEE
Q 025863 101 AHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSG-DRLYN 179 (247)
Q Consensus 101 ~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~-~~~yN 179 (247)
++-.-+++.|..++++++++=|=... .+.... -+.++.+++++++.|+++++- ....+- -++-.
T Consensus 143 erQrv~iArALaQ~~~iLLLDEPTs~-------LDi~~Q-------~evl~ll~~l~~~~~~tvv~v-lHDlN~A~ryad 207 (258)
T COG1120 143 ERQRVLIARALAQETPILLLDEPTSH-------LDIAHQ-------IEVLELLRDLNREKGLTVVMV-LHDLNLAARYAD 207 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCccc-------cCHHHH-------HHHHHHHHHHHHhcCCEEEEE-ecCHHHHHHhCC
Confidence 34556677788889999999994431 222222 278899999999999998875 444322 23444
Q ss_pred EEEEEccCCcEEE
Q 025863 180 TCCVFGSDGKLIA 192 (247)
Q Consensus 180 sa~li~p~G~il~ 192 (247)
..+++ .+|+++.
T Consensus 208 ~~i~l-k~G~i~a 219 (258)
T COG1120 208 HLILL-KDGKIVA 219 (258)
T ss_pred EEEEE-ECCeEEe
Confidence 45555 5787643
No 109
>PTZ00056 glutathione peroxidase; Provisional
Probab=38.07 E-value=2.4e+02 Score=23.60 Aligned_cols=38 Identities=16% Similarity=0.209 Sum_probs=25.1
Q ss_pred EEEEEeccc-c-cCHHHHHHHHHHHHHHHHHCCCeEEEcC
Q 025863 84 KVGLCQLSV-T-ADKERNIAHARRAIEEAAEKGAKLILLP 121 (247)
Q Consensus 84 kValvQ~~i-~-~d~~~n~~~i~~~i~~Aa~~gadLVVfP 121 (247)
|+-++-+.- + ..+...+..+.++.++-.+.|..+|-++
T Consensus 40 kvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~ 79 (199)
T PTZ00056 40 KVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFP 79 (199)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEec
Confidence 444554432 2 5566667778888777767788888775
No 110
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=37.93 E-value=63 Score=29.80 Aligned_cols=81 Identities=22% Similarity=0.308 Sum_probs=53.9
Q ss_pred HHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEc
Q 025863 106 AIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFG 185 (247)
Q Consensus 106 ~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~ 185 (247)
.|++|...++++++.=|.... . + .+. ...+++.|+++-++.|++|+.=+.....-.++.|.+.+++
T Consensus 151 aIARALa~~P~iLL~DEaTSA-L-----D--P~T------T~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~ 216 (339)
T COG1135 151 AIARALANNPKILLCDEATSA-L-----D--PET------TQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLD 216 (339)
T ss_pred HHHHHHhcCCCEEEecCcccc-C-----C--hHH------HHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEee
Confidence 455666778999998887542 1 0 111 2478899999999999999875332222345677788885
Q ss_pred cCCcEEEEEeccccCC
Q 025863 186 SDGKLIAKHRKIHLFD 201 (247)
Q Consensus 186 p~G~il~~Y~K~hL~~ 201 (247)
+|+++..-.=..+|.
T Consensus 217 -~G~lvE~G~v~~vF~ 231 (339)
T COG1135 217 -QGRLVEEGTVSEVFA 231 (339)
T ss_pred -CCEEEEeccHHHhhc
Confidence 788877655555544
No 111
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=37.90 E-value=1.8e+02 Score=23.15 Aligned_cols=63 Identities=16% Similarity=0.185 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcc-hhhhhhccCCCChHHHHHHHHHHHhcCcEEE
Q 025863 95 DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFP-VYAEDIDAGGDASPSTAMLSEVARLLKITIV 165 (247)
Q Consensus 95 d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~-~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv 165 (247)
+.++..+.+..+++++...+++++++.-...... .... ...+.. ..+-+.++++|+++++.++
T Consensus 86 ~~~~~~~~~~~~i~~i~~~~~~vil~~~~~~~~~--~~~~~~~~~~~------~~~n~~l~~~a~~~~v~~v 149 (185)
T cd01832 86 DPDTYRADLEEAVRRLRAAGARVVVFTIPDPAVL--EPFRRRVRARL------AAYNAVIRAVAARYGAVHV 149 (185)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEecCCCcccc--chhHHHHHHHH------HHHHHHHHHHHHHcCCEEE
Confidence 4555666677777777667889888753222011 1111 111111 2567789999999988765
No 112
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=37.30 E-value=1.8e+02 Score=23.17 Aligned_cols=76 Identities=18% Similarity=0.156 Sum_probs=42.8
Q ss_pred EEEEEecccc-----cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCC-CcchhhhhhccCCCChHHHHHHHHHH
Q 025863 84 KVGLCQLSVT-----ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHD-SFPVYAEDIDAGGDASPSTAMLSEVA 157 (247)
Q Consensus 84 kValvQ~~i~-----~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~-~~~~~~e~~~~~~~~~~~~~~l~~~A 157 (247)
.+.+++...- .+.++..+.++++++.+.+.++.+|++--......... ......+.+ ..+-+.++++|
T Consensus 61 d~v~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~------~~~n~~~~~~a 134 (183)
T cd04501 61 AVVIIMGGTNDIIVNTSLEMIKDNIRSMVELAEANGIKVILASPLPVDDYPWKPQWLRPANKL------KSLNRWLKDYA 134 (183)
T ss_pred CEEEEEeccCccccCCCHHHHHHHHHHHHHHHHHCCCcEEEEeCCCcCccccchhhcchHHHH------HHHHHHHHHHH
Confidence 4566666432 24566677777777777778888877632111111100 000111222 36667888999
Q ss_pred HhcCcEEE
Q 025863 158 RLLKITIV 165 (247)
Q Consensus 158 r~~~i~Iv 165 (247)
++.++.++
T Consensus 135 ~~~~v~~v 142 (183)
T cd04501 135 RENGLLFL 142 (183)
T ss_pred HHcCCCEE
Confidence 99887765
No 113
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=37.11 E-value=92 Score=25.52 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCcEEEEeeeeeec-CCee--E-EEEEEEccCCcEEEEEe
Q 025863 150 TAMLSEVARLLKITIVGGSIPERS-GDRL--Y-NTCCVFGSDGKLIAKHR 195 (247)
Q Consensus 150 ~~~l~~~Ar~~~i~Iv~Gs~~e~~-~~~~--y-Nsa~li~p~G~il~~Y~ 195 (247)
.+.+.++++.+++...-. ..... ++.. | +..++++|+|+++..|.
T Consensus 124 ~~~i~~l~~~~~v~~~~~-~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~ 172 (174)
T PF02630_consen 124 REEIEELAKQFGVYYEKV-PEDKPEGDYQIDHSAFIYLIDPDGRIRAIYN 172 (174)
T ss_dssp HHHHHHHHHHCTHCEEEE-ESSSTTSCEEEEESSEEEEE-TTSEEEEEEC
T ss_pred HHHHHHHHHHHHhhhccc-ccccCCCCceEecccEEEEEcCCCcEEEEEc
Confidence 355788888888766533 11112 2222 2 24689999999998874
No 114
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=36.80 E-value=1.3e+02 Score=27.45 Aligned_cols=66 Identities=17% Similarity=0.131 Sum_probs=45.9
Q ss_pred HCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccCCcEE
Q 025863 112 EKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLI 191 (247)
Q Consensus 112 ~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il 191 (247)
-..++++.+=|-.+. ++-.+. ....+.+++..++++++++..|....+=.++-+..++|+ .|+++
T Consensus 172 Lh~p~VLfLDEpTvg------LDV~aq--------~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~-~Gqlv 236 (325)
T COG4586 172 LHPPKVLFLDEPTVG------LDVNAQ--------ANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLID-QGQLV 236 (325)
T ss_pred cCCCcEEEecCCccC------cchhHH--------HHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEee-CCcEe
Confidence 347888888886552 122222 267788899999999999987654444456778888886 78876
Q ss_pred E
Q 025863 192 A 192 (247)
Q Consensus 192 ~ 192 (247)
.
T Consensus 237 ~ 237 (325)
T COG4586 237 F 237 (325)
T ss_pred e
Confidence 5
No 115
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=35.93 E-value=2e+02 Score=22.60 Aligned_cols=75 Identities=19% Similarity=0.133 Sum_probs=40.2
Q ss_pred EEEEEecccc-----cCHHHHHHHHHHHHHHHHHC--CCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHH
Q 025863 84 KVGLCQLSVT-----ADKERNIAHARRAIEEAAEK--GAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEV 156 (247)
Q Consensus 84 kValvQ~~i~-----~d~~~n~~~i~~~i~~Aa~~--gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~ 156 (247)
++.+++...- .+.++..+.++++++.+.+. ++.+++..-........ ......+.+ ..+-+.++++
T Consensus 53 d~v~i~~G~ND~~~~~~~~~~~~~~~~l~~~~~~~~p~~~vi~~~~~p~~~~~~-~~~~~~~~~------~~~n~~l~~~ 125 (174)
T cd01841 53 SKVFLFLGTNDIGKEVSSNQFIKWYRDIIEQIREEFPNTKIYLLSVLPVLEEDE-IKTRSNTRI------QRLNDAIKEL 125 (174)
T ss_pred CEEEEEeccccCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEeeCCcCcccc-cccCCHHHH------HHHHHHHHHH
Confidence 4556665542 24555566666666666543 56777653221111110 001111222 3677889999
Q ss_pred HHhcCcEEE
Q 025863 157 ARLLKITIV 165 (247)
Q Consensus 157 Ar~~~i~Iv 165 (247)
|+++++.++
T Consensus 126 a~~~~~~~i 134 (174)
T cd01841 126 APELGVTFI 134 (174)
T ss_pred HHHCCCEEE
Confidence 999997665
No 116
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=34.31 E-value=1.4e+02 Score=25.27 Aligned_cols=62 Identities=16% Similarity=0.182 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHH-HCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEee
Q 025863 100 IAHARRAIEEAA-EKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGS 168 (247)
Q Consensus 100 ~~~i~~~i~~Aa-~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs 168 (247)
++.+.+.++.+. +.++++||+==+...-... ......+.+ ..+.+.|+.+|+++|+++++-+
T Consensus 108 ~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~-~~~~~~~~~------~~~~~~L~~la~~~~~~ii~~~ 170 (242)
T cd00984 108 VSDIRSRARRLKKEHGLGLIVIDYLQLMSGSK-KKGNRQQEV------AEISRSLKLLAKELNVPVIALS 170 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCchhcCCCC-CCCCHHHHH------HHHHHHHHHHHHHhCCeEEEec
Confidence 444555555443 4589999876443211110 001111222 3678899999999999998764
No 117
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=34.04 E-value=1.4e+02 Score=21.65 Aligned_cols=46 Identities=15% Similarity=0.060 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEE
Q 025863 148 PSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKH 194 (247)
Q Consensus 148 ~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y 194 (247)
+-++.+.+.+++.|+.++.+ ........-...+++.+|+|..+..+
T Consensus 70 ~~l~~~~~~l~~~G~~~~~~-~~~~~~~~~~~~~~~~DP~G~~iel~ 115 (120)
T cd08362 70 ADVDALARQVAARGGTVLSE-PGATDDPGGGYGFRFFDPDGRLIEFS 115 (120)
T ss_pred HHHHHHHHHHHHcCCceecC-CcccCCCCCceEEEEECCCCCEEEEE
Confidence 45566777777888987654 21122211234678999999877654
No 118
>PLN02901 1-acyl-sn-glycerol-3-phosphate acyltransferase
Probab=33.80 E-value=1.5e+02 Score=24.97 Aligned_cols=55 Identities=20% Similarity=0.169 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEe
Q 025863 97 ERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGG 167 (247)
Q Consensus 97 ~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~G 167 (247)
....+.+++.++.. ++|-.+++|||..-+.. . .. .++..-...+|++.++.|+.-
T Consensus 106 ~~~~~~~~~~~~~l-~~g~~v~IfPEGtr~~~--~---~~----------~~f~~G~~~lA~~~~~pIvPv 160 (214)
T PLN02901 106 RSQLECLKRCMELL-KKGASVFFFPEGTRSKD--G---KL----------AAFKKGAFSVAAKTGVPVVPI 160 (214)
T ss_pred HHHHHHHHHHHHHH-hCCCEEEEeCCCCCCCC--C---cc----------cCchhhHHHHHHHcCCCEEEE
Confidence 33444444444443 56889999999964211 0 00 123333556888899988753
No 119
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=33.28 E-value=1.8e+02 Score=21.00 Aligned_cols=42 Identities=26% Similarity=0.472 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEE
Q 025863 148 PSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIA 192 (247)
Q Consensus 148 ~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~ 192 (247)
.-++.+.+.+++.|+.+..+ +...+.+.|. +++.+|+|..+.
T Consensus 82 ~~v~~~~~~l~~~g~~~~~~--~~~~~~g~~~-~~~~DPdG~~iE 123 (125)
T cd07241 82 EAVDELTERLRADGYLIIGE--PRTTGDGYYE-SVILDPEGNRIE 123 (125)
T ss_pred HHHHHHHHHHHHCCCEEEeC--ceecCCCeEE-EEEECCCCCEEE
Confidence 34555666667788887643 3223344554 457899998764
No 120
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=33.18 E-value=2e+02 Score=22.85 Aligned_cols=75 Identities=13% Similarity=0.185 Sum_probs=41.5
Q ss_pred ceEEEEEecccc----------cCHHHHHHHHHHHHHHHHH--CCCeEEEcCCCCCCCCCCCCc-----------chhhh
Q 025863 82 KFKVGLCQLSVT----------ADKERNIAHARRAIEEAAE--KGAKLILLPEIWNSPYSHDSF-----------PVYAE 138 (247)
Q Consensus 82 ~~kValvQ~~i~----------~d~~~n~~~i~~~i~~Aa~--~gadLVVfPE~~l~g~~~~~~-----------~~~~e 138 (247)
.-.+.+++...- .+.+...+.++++++++.+ .++.+|++-- ++.....+ ....+
T Consensus 63 ~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ii~~t~---~~~~~~~~~~~~~~~~~~~~~~~~ 139 (199)
T cd01838 63 QPDLVTIFFGANDAALPGQPQHVPLDEYKENLRKIVSHLKSLSPKTKVILITP---PPVDEEAWEKSLEDGGSQPGRTNE 139 (199)
T ss_pred CceEEEEEecCccccCCCCCCcccHHHHHHHHHHHHHHHHhhCCCCeEEEeCC---CCCCHHHHhhhhccccCCccccHH
Confidence 356777777531 1245555666666666655 5788877732 11111100 01111
Q ss_pred hhccCCCChHHHHHHHHHHHhcCcEEE
Q 025863 139 DIDAGGDASPSTAMLSEVARLLKITIV 165 (247)
Q Consensus 139 ~~~~~~~~~~~~~~l~~~Ar~~~i~Iv 165 (247)
.+ ..+.+.++++|+++++.++
T Consensus 140 ~~------~~~~~~~~~~a~~~~~~~i 160 (199)
T cd01838 140 LL------KQYAEACVEVAEELGVPVI 160 (199)
T ss_pred HH------HHHHHHHHHHHHHhCCcEE
Confidence 11 2566778899999998776
No 121
>cd06551 LPLAT Lysophospholipid acyltransferases (LPLATs) of glycerophospholipid biosynthesis. Lysophospholipid acyltransferase (LPLAT) superfamily members are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis. These proteins catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this superfamily are LPLATs such as glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB), 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), lysophosphatidylcholine acyltransferase 1 (LPCAT-1), lysophosphatidylethanolamine acyltransferase (LPEAT, also known as, MBOAT2, membrane-bound O-acyltransferase domain-containing protein 2), lipid A biosynthesis lauroyl/myristoyl acyltransferase, 2-acylglycerol O-acyltransferase (MGAT), dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-p
Probab=32.97 E-value=2.4e+02 Score=22.45 Aligned_cols=54 Identities=13% Similarity=0.076 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHC-CCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEee
Q 025863 100 IAHARRAIEEAAEK-GAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGS 168 (247)
Q Consensus 100 ~~~i~~~i~~Aa~~-gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs 168 (247)
.+.++..++. .++ |-.+++|||........ . ..++..-...+|++.++.|+.-+
T Consensus 87 ~~~~~~~~~~-l~~~g~~v~ifPeG~~~~~~~----~----------~~~~~~g~~~la~~~~~~IvPv~ 141 (187)
T cd06551 87 AKSLKYVARL-LSKPGSVVWIFPEGTRTRRDK----R----------PLQFKPGVAHLAEKAGVPIVPVA 141 (187)
T ss_pred HHHHHHHHHH-HhcCCcEEEEeCCcccCCCCC----C----------cccccchHHHHHHHcCCcEEEEE
Confidence 3334444443 445 88999999987543210 0 01334446678888899988653
No 122
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.72 E-value=1.9e+02 Score=24.05 Aligned_cols=68 Identities=19% Similarity=0.208 Sum_probs=36.6
Q ss_pred HHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccCC
Q 025863 109 EAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDG 188 (247)
Q Consensus 109 ~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G 188 (247)
.|.-.+++++++=|-+.. .+ . +.. ....+.+.+++++.+.++++-+....+-..+.+..++++ +|
T Consensus 144 ~al~~~p~llllDEPt~~-LD-----~--~~~------~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~-~G 208 (214)
T cd03297 144 RALAAQPELLLLDEPFSA-LD-----R--ALR------LQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVME-DG 208 (214)
T ss_pred HHHhcCCCEEEEcCCccc-CC-----H--HHH------HHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEE-CC
Confidence 344457888888884431 21 1 111 256677777777667666654332222223455566675 67
Q ss_pred cEE
Q 025863 189 KLI 191 (247)
Q Consensus 189 ~il 191 (247)
+++
T Consensus 209 ~i~ 211 (214)
T cd03297 209 RLQ 211 (214)
T ss_pred EEE
Confidence 654
No 123
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=32.45 E-value=1.7e+02 Score=22.95 Aligned_cols=58 Identities=26% Similarity=0.387 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEE
Q 025863 95 DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIV 165 (247)
Q Consensus 95 d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv 165 (247)
+.++..+.++++++.+.+.++++|+..= ..+... . ..+ . ..+.+.++++|+++++.++
T Consensus 82 ~~~~~~~~l~~li~~~~~~~~~vil~~~-~~~~~~--~-~~~---~------~~~~~~~~~~a~~~~~~~~ 139 (177)
T cd01822 82 PPDQTRANLRQMIETAQARGAPVLLVGM-QAPPNY--G-PRY---T------RRFAAIYPELAEEYGVPLV 139 (177)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEec-CCCCcc--c-hHH---H------HHHHHHHHHHHHHcCCcEe
Confidence 4566667777777777777899887521 011110 0 011 1 2566778889999998765
No 124
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=32.38 E-value=1.4e+02 Score=21.74 Aligned_cols=46 Identities=11% Similarity=-0.022 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEec
Q 025863 150 TAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRK 196 (247)
Q Consensus 150 ~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K 196 (247)
++.+.+.+++.|+.+... -.........++.++.+|+|..+..+.+
T Consensus 72 l~~~~~~l~~~G~~~~~~-~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 117 (120)
T cd07254 72 VAEAKARAEAAGLPTFKE-EDTTCCYAVQDKVWVTDPDGNAWEVFVT 117 (120)
T ss_pred HHHHHHHHHHcCCeEEcc-CCcccccCCcceEEEECCCCCEEEEEEe
Confidence 455666667788887643 1111112224678899999988876654
No 125
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=31.84 E-value=1.6e+02 Score=21.26 Aligned_cols=42 Identities=17% Similarity=0.205 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEE
Q 025863 149 STAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKH 194 (247)
Q Consensus 149 ~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y 194 (247)
-++.+.+.+++.|+.++.+ ++..+.+ + .+++.+|+|..+..|
T Consensus 72 ~~~~~~~~~~~~g~~v~~~--~~~~~~g-~-~~~~~DPdGn~ie~~ 113 (114)
T cd07261 72 AVDALYAEWQAKGVKIIQE--PTEMDFG-Y-TFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHHHHHHHHCCCeEecC--ccccCCc-c-EEEEECCCCCEEEee
Confidence 3455666667888888765 3333322 2 568999999987655
No 126
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=31.65 E-value=1.6e+02 Score=27.01 Aligned_cols=71 Identities=23% Similarity=0.282 Sum_probs=42.3
Q ss_pred HHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEcc
Q 025863 107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGS 186 (247)
Q Consensus 107 i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p 186 (247)
+..|...+++++++=|-+.. .+ . +. .....+.++++.++.++++++-+.....-..+.+..++++
T Consensus 151 IARAL~~~P~iLLlDEPts~-LD-----~--~t------~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~- 215 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSA-LD-----P--AT------TQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVIS- 215 (343)
T ss_pred HHHHHHhCCCEEEEeCCccc-CC-----H--HH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-
Confidence 34445568899999886532 11 1 11 1366778888888778888775332222234556667774
Q ss_pred CCcEEE
Q 025863 187 DGKLIA 192 (247)
Q Consensus 187 ~G~il~ 192 (247)
+|+++.
T Consensus 216 ~G~iv~ 221 (343)
T TIGR02314 216 NGELIE 221 (343)
T ss_pred CCEEEE
Confidence 787764
No 127
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=31.43 E-value=2e+02 Score=23.50 Aligned_cols=65 Identities=11% Similarity=0.059 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEe
Q 025863 101 AHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGG 167 (247)
Q Consensus 101 ~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~G 167 (247)
++..+.++...+.|.|-||+--....+...-.......... ....+.++.+-++|.++|+.+.+|
T Consensus 20 ~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~--~~~~d~l~~~L~~A~~~Gmkv~~G 84 (166)
T PF14488_consen 20 AQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFY--MPPVDLLEMILDAADKYGMKVFVG 84 (166)
T ss_pred HHHHHHHHHHHHcCCcEEEEEEeecCCcccCCccccCcccc--CCcccHHHHHHHHHHHcCCEEEEe
Confidence 44556666666779999999866655532211000011000 013478999999999999999999
No 128
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=31.17 E-value=1.2e+02 Score=22.09 Aligned_cols=45 Identities=9% Similarity=-0.206 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEE
Q 025863 148 PSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKH 194 (247)
Q Consensus 148 ~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y 194 (247)
+-++.+.+.+++.|+.+.-+ ++........+.++.+|+|..+..+
T Consensus 72 ~dv~~~~~~l~~~g~~~~~~--~~~~~~~~~~~~~~~DPdG~~ve~~ 116 (121)
T cd07266 72 EDLDKAEAFFQELGLPTEWV--EAGEEPGQGRALRVEDPLGFPIEFY 116 (121)
T ss_pred HHHHHHHHHHHHcCCCcccc--cCCcCCCCccEEEEECCCCCEEEEE
Confidence 44556666667778877533 2222222234789999999877654
No 129
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=31.12 E-value=1.1e+02 Score=28.23 Aligned_cols=72 Identities=15% Similarity=0.133 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEEEcCCCCCC----------CCCCC-Cc--chhhhhhccCCCChHHHHHHHHHHHhcCc
Q 025863 96 KERNIAHARRAIEEAAEKGAKLILLPEIWNS----------PYSHD-SF--PVYAEDIDAGGDASPSTAMLSEVARLLKI 162 (247)
Q Consensus 96 ~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~----------g~~~~-~~--~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i 162 (247)
-..+++..+++|+.|++.|||.|=|.=...- .|... .| ..+.+.........+..+.|.+.+++.|+
T Consensus 11 H~Gdl~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~Gi 90 (329)
T TIGR03569 11 HNGSLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKGI 90 (329)
T ss_pred ccCcHHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 3456899999999999999999877643110 01000 00 01112222223356788999999999999
Q ss_pred EEEEe
Q 025863 163 TIVGG 167 (247)
Q Consensus 163 ~Iv~G 167 (247)
.++.-
T Consensus 91 ~~~st 95 (329)
T TIGR03569 91 EFLST 95 (329)
T ss_pred cEEEE
Confidence 98754
No 130
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=30.67 E-value=1.7e+02 Score=26.01 Aligned_cols=67 Identities=15% Similarity=0.138 Sum_probs=42.5
Q ss_pred HHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEE
Q 025863 104 RRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCV 183 (247)
Q Consensus 104 ~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~l 183 (247)
+-++++|...++||+++=|=+.. - +...+ ..+.+.|.++.++ |++|++=+..-..-..+++..++
T Consensus 147 RV~lARAL~~~p~lllLDEP~~g-v-----D~~~~--------~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~vi~ 211 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTG-V-----DVAGQ--------KEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVIC 211 (254)
T ss_pred HHHHHHHhccCCCEEEecCCccc-C-----CHHHH--------HHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEEEE
Confidence 34567777789999999995442 2 11112 3778889999888 88887643211112345666666
Q ss_pred Ec
Q 025863 184 FG 185 (247)
Q Consensus 184 i~ 185 (247)
++
T Consensus 212 Ln 213 (254)
T COG1121 212 LN 213 (254)
T ss_pred Ec
Confidence 65
No 131
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=30.62 E-value=2.4e+02 Score=24.39 Aligned_cols=65 Identities=18% Similarity=0.111 Sum_probs=34.8
Q ss_pred HHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeec-----CCeeEEEE
Q 025863 107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERS-----GDRLYNTC 181 (247)
Q Consensus 107 i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~-----~~~~yNsa 181 (247)
.+..+..|+|+|+.|=.+.... .. ......++.-|-+++++++..+..-.. +..++-.+
T Consensus 162 ~r~l~~~ga~ii~~ps~~~~~~---------~~-------~~~~~~~~arA~en~~~vv~an~~G~~~~~~~~~~~~G~S 225 (280)
T cd07574 162 ARALAEAGADLLLVPSCTDTRA---------GY-------WRVRIGAQARALENQCYVVQSGTVGNAPWSPAVDVNYGQA 225 (280)
T ss_pred HHHHHHcCCCEEEECCcCCccc---------cH-------HHHHHHHHHHHHhhCceEEEeCCCCCCCCccccccccccc
Confidence 3455578999999986432110 00 022223455677889998754211111 12344456
Q ss_pred EEEccC
Q 025863 182 CVFGSD 187 (247)
Q Consensus 182 ~li~p~ 187 (247)
.+++|.
T Consensus 226 ~i~~P~ 231 (280)
T cd07574 226 AVYTPC 231 (280)
T ss_pred eeecCC
Confidence 777875
No 132
>PF10042 DUF2278: Uncharacterized conserved protein (DUF2278); InterPro: IPR019268 This entry consists of hypothetical proteins with no known function.
Probab=30.37 E-value=76 Score=27.30 Aligned_cols=36 Identities=8% Similarity=0.075 Sum_probs=29.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCC
Q 025863 93 TADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPY 128 (247)
Q Consensus 93 ~~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~ 128 (247)
.+.-..-.+.++.++.+|.+++++|.+|.|.+.+|-
T Consensus 114 ~G~~ndl~d~Le~~l~~A~~~~~~iyvFG~~F~~g~ 149 (206)
T PF10042_consen 114 PGPDNDLNDDLEPYLQRAISDDATIYVFGEPFRPGN 149 (206)
T ss_pred CCCcchHHHHHHHHHHHHHhCCCEEEEECceecCCC
Confidence 344445677888899999999999999999987763
No 133
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=29.97 E-value=2.6e+02 Score=24.36 Aligned_cols=67 Identities=19% Similarity=0.219 Sum_probs=39.4
Q ss_pred HHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEc
Q 025863 106 AIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFG 185 (247)
Q Consensus 106 ~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~ 185 (247)
..+.++.+|+|+|+.|=.... |... ... .......+..|.+++++++.- . .. | .+.+++
T Consensus 168 ~~r~~~~~ga~iil~ps~~~~-~~~~-----~~~-------~~~~~~~~arA~en~~~vv~~-n--~~-G----~S~ivd 226 (270)
T cd07571 168 LVRDAVRQGADLLVNITNDAW-FGDS-----AGP-------YQHLAMARLRAIETGRPLVRA-A--NT-G----ISAVID 226 (270)
T ss_pred HHHhhcccCCCEEEEcCcccc-cCCC-----cch-------HHHHHHHHHHHHHhCCCEEEE-c--CC-e----eeEEEC
Confidence 345555679999999864211 1100 000 123344566788999998753 1 11 2 267789
Q ss_pred cCCcEEEE
Q 025863 186 SDGKLIAK 193 (247)
Q Consensus 186 p~G~il~~ 193 (247)
|.|+++..
T Consensus 227 p~G~ii~~ 234 (270)
T cd07571 227 PDGRIVAR 234 (270)
T ss_pred CCCcEEee
Confidence 99998754
No 134
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=29.42 E-value=2.6e+02 Score=21.28 Aligned_cols=76 Identities=17% Similarity=0.226 Sum_probs=42.3
Q ss_pred eEEEEEecccc----c-----CHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCc-chhhhhhccCCCChHHHHH
Q 025863 83 FKVGLCQLSVT----A-----DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSF-PVYAEDIDAGGDASPSTAM 152 (247)
Q Consensus 83 ~kValvQ~~i~----~-----d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~-~~~~e~~~~~~~~~~~~~~ 152 (247)
.++-++++..- + +.++..+.+.++++.+...+ .++++--........... ....... ..+.+.
T Consensus 62 ~d~vvi~~G~ND~~~~~~~~~~~~~~~~~l~~~i~~~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 134 (179)
T PF13472_consen 62 PDLVVISFGTNDVLNGDENDTSPEQYEQNLRRIIEQLRPHG-PVILVSPPPRGPDPRDPKQDYLNRRI------DRYNQA 134 (179)
T ss_dssp CSEEEEE--HHHHCTCTTCHHHHHHHHHHHHHHHHHHHTTS-EEEEEE-SCSSSSTTTTHTTCHHHHH------HHHHHH
T ss_pred CCEEEEEcccccccccccccccHHHHHHHHHHHHHhhcccC-cEEEecCCCcccccccccchhhhhhH------HHHHHH
Confidence 45667776531 2 24556677777777776655 776665544332222110 1111222 367788
Q ss_pred HHHHHHhcCcEEE
Q 025863 153 LSEVARLLKITIV 165 (247)
Q Consensus 153 l~~~Ar~~~i~Iv 165 (247)
++++|+++++.++
T Consensus 135 ~~~~a~~~~~~~i 147 (179)
T PF13472_consen 135 IRELAKKYGVPFI 147 (179)
T ss_dssp HHHHHHHCTEEEE
T ss_pred HHHHHHHcCCEEE
Confidence 8999999988775
No 135
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=29.35 E-value=1.5e+02 Score=26.00 Aligned_cols=55 Identities=18% Similarity=0.272 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHCCCe-EEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeee
Q 025863 99 NIAHARRAIEEAAEKGAK-LILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIP 170 (247)
Q Consensus 99 n~~~i~~~i~~Aa~~gad-LVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~ 170 (247)
+.+...++.+.|.+.|+| +++.|-.+.. . .+ ....+.+++++...++.+++-.++
T Consensus 80 ~~~~~~~~a~~a~~~G~d~v~~~~P~~~~-~--------~~--------~~l~~~~~~ia~~~~~pi~lYn~P 135 (284)
T cd00950 80 NTAEAIELTKRAEKAGADAALVVTPYYNK-P--------SQ--------EGLYAHFKAIAEATDLPVILYNVP 135 (284)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcccccCC-C--------CH--------HHHHHHHHHHHhcCCCCEEEEECh
Confidence 466778888888889999 5666654421 0 01 256677777877777777764333
No 136
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=29.06 E-value=1.5e+02 Score=26.40 Aligned_cols=44 Identities=18% Similarity=0.306 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEe
Q 025863 102 HARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGG 167 (247)
Q Consensus 102 ~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~G 167 (247)
-++++++++++.|+|=|++|-+.. +..+.+.+.++++|+..+.-
T Consensus 107 G~e~F~~~~~~aGvdgviipDLP~----------------------ee~~~~~~~~~~~gi~~I~l 150 (263)
T CHL00200 107 GINKFIKKISQAGVKGLIIPDLPY----------------------EESDYLISVCNLYNIELILL 150 (263)
T ss_pred CHHHHHHHHHHcCCeEEEecCCCH----------------------HHHHHHHHHHHHcCCCEEEE
Confidence 456677777777888888887642 22345667778888776553
No 137
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.70 E-value=1.1e+02 Score=22.46 Aligned_cols=22 Identities=14% Similarity=0.126 Sum_probs=19.0
Q ss_pred ChHHHHHHHHHHHhcCcEEEEe
Q 025863 146 ASPSTAMLSEVARLLKITIVGG 167 (247)
Q Consensus 146 ~~~~~~~l~~~Ar~~~i~Iv~G 167 (247)
.+......++.|++++++++.-
T Consensus 60 sH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 60 SHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred ChHHHHHHHHHHHHcCCcEEEE
Confidence 4788899999999999999753
No 138
>smart00642 Aamy Alpha-amylase domain.
Probab=28.64 E-value=3e+02 Score=22.39 Aligned_cols=64 Identities=13% Similarity=0.165 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHCCCeEEEcCCCC--------CCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEe
Q 025863 100 IAHARRAIEEAAEKGAKLILLPEIW--------NSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGG 167 (247)
Q Consensus 100 ~~~i~~~i~~Aa~~gadLVVfPE~~--------l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~G 167 (247)
++.+.+.+...++.|++-|.++=.+ ..||...++....+.. ...+-++.|.+.|++.|+.+++=
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~----Gt~~d~~~lv~~~h~~Gi~vilD 89 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRF----GTMEDFKELVDAAHARGIKVILD 89 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCccc----CCHHHHHHHHHHHHHCCCEEEEE
Confidence 4455555555666799998776542 2344433332221111 12356777888889999999875
No 139
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=28.58 E-value=2.5e+02 Score=23.11 Aligned_cols=67 Identities=12% Similarity=0.195 Sum_probs=36.8
Q ss_pred HHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccCCc
Q 025863 110 AAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGK 189 (247)
Q Consensus 110 Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~ 189 (247)
|...+++++++=|-+.. .+ . +. .....+.+.+++++.+..+++-+.....-..+.+..+++. +|+
T Consensus 142 al~~~p~llllDEP~~~-LD-----~--~~------~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~-~G~ 206 (211)
T cd03298 142 VLVRDKPVLLLDEPFAA-LD-----P--AL------RAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLD-NGR 206 (211)
T ss_pred HHhcCCCEEEEcCCccc-CC-----H--HH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEE-CCE
Confidence 33457888888775432 11 1 11 1256667777776667777664332222234456667775 677
Q ss_pred EE
Q 025863 190 LI 191 (247)
Q Consensus 190 il 191 (247)
++
T Consensus 207 i~ 208 (211)
T cd03298 207 IA 208 (211)
T ss_pred Ee
Confidence 54
No 140
>cd07992 LPLAT_AAK14816-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown AAK14816-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized glycerol-3-phosphate acyltransferases such as the Plasmodium falciparum locus AAK14816 putative acyltransferase, and similar proteins.
Probab=28.53 E-value=80 Score=26.24 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHCCCeEEEcCCCCCC
Q 025863 102 HARRAIEEAAEKGAKLILLPEIWNS 126 (247)
Q Consensus 102 ~i~~~i~~Aa~~gadLVVfPE~~l~ 126 (247)
...+.+.++.++|-.++||||...+
T Consensus 98 ~~~~~~~~~l~~G~~l~IFPEGtr~ 122 (203)
T cd07992 98 AVFDAVGEALKAGGAIGIFPEGGSH 122 (203)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 3444555556778999999999854
No 141
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=27.84 E-value=3.4e+02 Score=23.07 Aligned_cols=59 Identities=8% Similarity=-0.067 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCC--cchhhhhhccCCCChHHHHHHHHHHHhcCcEEEE
Q 025863 98 RNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDS--FPVYAEDIDAGGDASPSTAMLSEVARLLKITIVG 166 (247)
Q Consensus 98 ~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~--~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~ 166 (247)
+..+.+++.++.|..-|+..|.++= |..... ..+..+.. -+.++.+.+.|+++|+.+.+
T Consensus 81 ~~~~~~~~~i~~a~~lg~~~i~~~~----g~~~~~~~~~~~~~~~------~~~l~~l~~~A~~~gi~l~l 141 (254)
T TIGR03234 81 EFREGVALAIAYARALGCPQVNCLA----GKRPAGVSPEEARATL------VENLRYAADALDRIGLTLLI 141 (254)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEECc----CCCCCCCCHHHHHHHH------HHHHHHHHHHHHhcCCEEEE
Confidence 3456777888888888998876542 222111 11111111 24567778889999998865
No 142
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=27.43 E-value=2.3e+02 Score=20.21 Aligned_cols=41 Identities=5% Similarity=-0.063 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEE
Q 025863 150 TAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAK 193 (247)
Q Consensus 150 ~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~ 193 (247)
++.+.+.+++.|+.++.+ +...++.-+ .+++.+|+|..+..
T Consensus 72 i~~~~~~l~~~g~~~~~~--~~~~~~~~~-~~~~~DPdG~~~~l 112 (114)
T cd07247 72 VDAAAARVEAAGGKVLVP--PTDIPGVGR-FAVFADPEGAVFGL 112 (114)
T ss_pred HHHHHHHHHHCCCEEEeC--CcccCCcEE-EEEEECCCCCEEEe
Confidence 455666677889988766 222232223 68889999987654
No 143
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.32 E-value=2.6e+02 Score=23.52 Aligned_cols=69 Identities=19% Similarity=0.167 Sum_probs=38.5
Q ss_pred HHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccC
Q 025863 108 EEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSD 187 (247)
Q Consensus 108 ~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~ 187 (247)
..|...+++++++=|-+.. . +.... ....+.+.+++++.+.++++-+.....-..+.+..+++. +
T Consensus 156 a~al~~~p~llllDEPt~~-L-----D~~~~--------~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~-~ 220 (241)
T cd03256 156 ARALMQQPKLILADEPVAS-L-----DPASS--------RQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLK-D 220 (241)
T ss_pred HHHHhcCCCEEEEeCcccc-C-----CHHHH--------HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-C
Confidence 3344457888888885432 1 11111 256677777777667766654332222223556677775 7
Q ss_pred CcEE
Q 025863 188 GKLI 191 (247)
Q Consensus 188 G~il 191 (247)
|+++
T Consensus 221 G~i~ 224 (241)
T cd03256 221 GRIV 224 (241)
T ss_pred CEEE
Confidence 8764
No 144
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=27.19 E-value=2.4e+02 Score=20.57 Aligned_cols=44 Identities=7% Similarity=-0.059 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEE
Q 025863 149 STAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKH 194 (247)
Q Consensus 149 ~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y 194 (247)
-++.+.+..++.|+.+..+ +.......-.++++.+|+|..+..|
T Consensus 74 dv~~~~~~l~~~G~~~~~~--~~~~~~~~~~~~~~~DPdG~~iE~~ 117 (122)
T cd07265 74 DLEKLEARLQAYGVAVERI--PAGELPGVGRRVRFQLPSGHTMELY 117 (122)
T ss_pred HHHHHHHHHHHCCCcEEEc--ccCCCCCCceEEEEECCCCCEEEEE
Confidence 4566666777888877533 3222222223678999999887655
No 145
>PTZ00261 acyltransferase; Provisional
Probab=26.95 E-value=91 Score=29.11 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHCCCeEEEcCCCCCC
Q 025863 100 IAHARRAIEEAAEKGAKLILLPEIWNS 126 (247)
Q Consensus 100 ~~~i~~~i~~Aa~~gadLVVfPE~~l~ 126 (247)
.+.+.+.+++..++|-.++||||..-+
T Consensus 201 ~~~v~~~~~e~Lk~G~sLvIFPEGTRS 227 (355)
T PTZ00261 201 QAQVQQAIDAHLRLGGSLAFFPEGAIN 227 (355)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCcCCc
Confidence 334555555566788999999999753
No 146
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=26.82 E-value=1.9e+02 Score=25.57 Aligned_cols=55 Identities=16% Similarity=0.285 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHCCCe-EEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeee
Q 025863 99 NIAHARRAIEEAAEKGAK-LILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIP 170 (247)
Q Consensus 99 n~~~i~~~i~~Aa~~gad-LVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~ 170 (247)
+.+...++.+.|.+.|+| +++.|-.+... .+ ....+.+++++...++.+++-.+|
T Consensus 78 s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~---------~~--------~~i~~~~~~i~~~~~~pi~lYn~P 133 (285)
T TIGR00674 78 ATEEAISLTKFAEDVGADGFLVVTPYYNKP---------TQ--------EGLYQHFKAIAEEVDLPIILYNVP 133 (285)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcCCcCCCC---------CH--------HHHHHHHHHHHhcCCCCEEEEECc
Confidence 567788888888889999 56666544321 01 256677777877777777654344
No 147
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=26.79 E-value=2.5e+02 Score=23.75 Aligned_cols=70 Identities=13% Similarity=0.125 Sum_probs=39.8
Q ss_pred HHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccC
Q 025863 108 EEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSD 187 (247)
Q Consensus 108 ~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~ 187 (247)
..|...+++++++=|-+. |.+ .... ....+.+.+++++.+.++++-|....+-..+.+..+++. +
T Consensus 126 a~al~~~p~lllLDEPt~-gLD-----~~~~--------~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~-~ 190 (230)
T TIGR01184 126 ARALSIRPKVLLLDEPFG-ALD-----ALTR--------GNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLT-N 190 (230)
T ss_pred HHHHHcCCCEEEEcCCCc-CCC-----HHHH--------HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEe-C
Confidence 344456889999988543 221 1111 256667777777767776665432222234456667774 6
Q ss_pred CcEEE
Q 025863 188 GKLIA 192 (247)
Q Consensus 188 G~il~ 192 (247)
|+++.
T Consensus 191 G~i~~ 195 (230)
T TIGR01184 191 GPAAN 195 (230)
T ss_pred CcEec
Confidence 87753
No 148
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=26.59 E-value=3.9e+02 Score=22.88 Aligned_cols=62 Identities=15% Similarity=0.010 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCc--chhhhhhccCCCChHHHHHHHHHHHhcCcEEEE
Q 025863 95 DKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSF--PVYAEDIDAGGDASPSTAMLSEVARLLKITIVG 166 (247)
Q Consensus 95 d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~--~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~ 166 (247)
+.++..+.+++.++.|..-|+..|+.+= |+..... .+..+.. .+.+..+.+.|+++|+.+.+
T Consensus 79 ~~~~~~~~~~~~i~~a~~lga~~i~~~~----g~~~~~~~~~~~~~~~------~~~l~~l~~~a~~~Gv~l~l 142 (258)
T PRK09997 79 REEEFRDGVAAAIRYARALGNKKINCLV----GKTPAGFSSEQIHATL------VENLRYAANMLMKEDILLLI 142 (258)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCEEEECC----CCCCCCCCHHHHHHHH------HHHHHHHHHHHHHcCCEEEE
Confidence 3445677888999999889999876532 2221111 1111111 24566777788899998765
No 149
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=26.59 E-value=2.3e+02 Score=26.30 Aligned_cols=68 Identities=21% Similarity=0.253 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEcCCCCCCC----------CC----CCCcchhhhhhccCCCChHHHHHHHHHHHhcCcE
Q 025863 98 RNIAHARRAIEEAAEKGAKLILLPEIWNSP----------YS----HDSFPVYAEDIDAGGDASPSTAMLSEVARLLKIT 163 (247)
Q Consensus 98 ~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g----------~~----~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~ 163 (247)
..+++..++|+.|++.|||+|=|.-....- |. .++ ..+-|..+....+-++...|.+.|++.|+.
T Consensus 27 G~le~A~~lIdaAk~aGADavKfQt~~~~d~~t~~~~~~~~~i~~~~~~-~slyel~e~~~~p~e~~~~Lke~a~~~Gi~ 105 (347)
T COG2089 27 GDLERAKELIDAAKEAGADAVKFQTFYTPDIMTLESKNVPFKIKTLWDK-VSLYELYEEAETPLEWHAQLKEYARKRGII 105 (347)
T ss_pred CcHHHHHHHHHHHHHcCcceeeeecccccccccccccCCcccccccccc-ccHHHHHHHhcCCHHHHHHHHHHHHHcCeE
Confidence 458899999999999999999876622211 11 000 000111111223467888999999999986
Q ss_pred EEE
Q 025863 164 IVG 166 (247)
Q Consensus 164 Iv~ 166 (247)
+..
T Consensus 106 ~~S 108 (347)
T COG2089 106 FFS 108 (347)
T ss_pred EEe
Confidence 653
No 150
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=26.41 E-value=3.2e+02 Score=21.46 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=41.1
Q ss_pred eEEEEEecccc----c-----CHHHHHHHHHHHHHHH--HHCCCeEEEcCCCCCCCCCCC--CcchhhhhhccCCCChHH
Q 025863 83 FKVGLCQLSVT----A-----DKERNIAHARRAIEEA--AEKGAKLILLPEIWNSPYSHD--SFPVYAEDIDAGGDASPS 149 (247)
Q Consensus 83 ~kValvQ~~i~----~-----d~~~n~~~i~~~i~~A--a~~gadLVVfPE~~l~g~~~~--~~~~~~e~~~~~~~~~~~ 149 (247)
-++.+++...- . +.++-.+.++++++.+ ...++.+|+..=......... ......+.+ ..+
T Consensus 62 ~d~v~l~~G~ND~~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~ii~~~p~~~~~~~~~~~~~~~~~~~~------~~~ 135 (191)
T cd01834 62 PDVVSIMFGINDSFRGFDDPVGLEKFKTNLRRLIDRLKNKESAPRIVLVSPIAYEANEDPLPDGAEYNANL------AAY 135 (191)
T ss_pred CCEEEEEeecchHhhcccccccHHHHHHHHHHHHHHHHcccCCCcEEEECCcccCCCCCCCCChHHHHHHH------HHH
Confidence 35666666531 1 3555556666777666 455788777532111111000 001111222 366
Q ss_pred HHHHHHHHHhcCcEEE
Q 025863 150 TAMLSEVARLLKITIV 165 (247)
Q Consensus 150 ~~~l~~~Ar~~~i~Iv 165 (247)
.+.++++|+++++.++
T Consensus 136 n~~l~~~a~~~~~~~i 151 (191)
T cd01834 136 ADAVRELAAENGVAFV 151 (191)
T ss_pred HHHHHHHHHHcCCeEE
Confidence 7788899999998776
No 151
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=26.36 E-value=3.3e+02 Score=21.52 Aligned_cols=75 Identities=11% Similarity=-0.003 Sum_probs=40.5
Q ss_pred EEEEEecccc------cCHHHHHHHHHHHHHHHHH--CCCeEEEcCCCCCCCCCCC-CcchhhhhhccCCCChHHHHHHH
Q 025863 84 KVGLCQLSVT------ADKERNIAHARRAIEEAAE--KGAKLILLPEIWNSPYSHD-SFPVYAEDIDAGGDASPSTAMLS 154 (247)
Q Consensus 84 kValvQ~~i~------~d~~~n~~~i~~~i~~Aa~--~gadLVVfPE~~l~g~~~~-~~~~~~e~~~~~~~~~~~~~~l~ 154 (247)
.+-++|...- .+.+.-.+.++++++++.+ .++++|+..=... .+... ......+. ...+.+.++
T Consensus 58 d~Vii~~G~ND~~~~~~~~~~~~~~~~~li~~i~~~~~~~~iv~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~ 130 (189)
T cd01825 58 DLVILSYGTNEAFNKQLNASEYRQQLREFIKRLRQILPNASILLVGPPDS-LQKTGAGRWRTPPG------LDAVIAAQR 130 (189)
T ss_pred CEEEEECCCcccccCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEcCCch-hccCCCCCcccCCc------HHHHHHHHH
Confidence 4556666431 2345556666666666655 5788887642111 01100 00001111 236778899
Q ss_pred HHHHhcCcEEE
Q 025863 155 EVARLLKITIV 165 (247)
Q Consensus 155 ~~Ar~~~i~Iv 165 (247)
++++++++.++
T Consensus 131 ~~a~~~~v~~v 141 (189)
T cd01825 131 RVAKEEGIAFW 141 (189)
T ss_pred HHHHHcCCeEE
Confidence 99999998765
No 152
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=26.30 E-value=1.1e+02 Score=25.10 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=18.5
Q ss_pred eEEEEEEEccCCcEEEEEeccccC
Q 025863 177 LYNTCCVFGSDGKLIAKHRKIHLF 200 (247)
Q Consensus 177 ~yNsa~li~p~G~il~~Y~K~hL~ 200 (247)
.-=+.|+|+++|.|...+++....
T Consensus 119 ~~R~TfvId~dG~I~~~~~~v~~~ 142 (157)
T COG1225 119 IERSTFVIDPDGKIRYVWRKVKVK 142 (157)
T ss_pred ccceEEEECCCCeEEEEecCCCCc
Confidence 334579999999999888777653
No 153
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=25.93 E-value=2.8e+02 Score=23.89 Aligned_cols=67 Identities=21% Similarity=0.304 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeee-eecCCeeE
Q 025863 100 IAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIP-ERSGDRLY 178 (247)
Q Consensus 100 ~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~-e~~~~~~y 178 (247)
++.+.+.++++. +++|+||+==-|-..|.. . ..+..+.+...+-+.|+.+|+|+.+ ...+=..|
T Consensus 170 ~~~i~~~i~~~r-~~~D~vIv~~HwG~e~~~-------~-------p~~~q~~~a~~lidaGaDiIiG~HpHv~q~~E~y 234 (250)
T PF09587_consen 170 IERIKEDIREAR-KKADVVIVSLHWGIEYEN-------Y-------PTPEQRELARALIDAGADIIIGHHPHVIQPVEIY 234 (250)
T ss_pred HHHHHHHHHHHh-cCCCEEEEEeccCCCCCC-------C-------CCHHHHHHHHHHHHcCCCEEEeCCCCcccceEEE
Confidence 378888888887 689997764433211211 1 1245555666666789999999654 22333455
Q ss_pred EEE
Q 025863 179 NTC 181 (247)
Q Consensus 179 Nsa 181 (247)
+..
T Consensus 235 ~~~ 237 (250)
T PF09587_consen 235 KGK 237 (250)
T ss_pred CCE
Confidence 333
No 154
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=25.89 E-value=2.2e+02 Score=25.24 Aligned_cols=70 Identities=11% Similarity=0.085 Sum_probs=39.3
Q ss_pred HHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccC
Q 025863 108 EEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSD 187 (247)
Q Consensus 108 ~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~ 187 (247)
..|...+++++++=|-+.. .+ ... .....+.+.+++++.+.++++-+.....-..+.+..+++. +
T Consensus 157 AraL~~~P~llllDEPt~~-LD-----~~~--------~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~-~ 221 (290)
T PRK13634 157 AGVLAMEPEVLVLDEPTAG-LD-----PKG--------RKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMH-K 221 (290)
T ss_pred HHHHHcCCCEEEEECCccc-CC-----HHH--------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-C
Confidence 3344457788888775432 11 111 1256677788877777777664332222224556677774 7
Q ss_pred CcEEE
Q 025863 188 GKLIA 192 (247)
Q Consensus 188 G~il~ 192 (247)
|+++.
T Consensus 222 G~i~~ 226 (290)
T PRK13634 222 GTVFL 226 (290)
T ss_pred CEEEE
Confidence 87653
No 155
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.70 E-value=2.8e+02 Score=23.02 Aligned_cols=70 Identities=11% Similarity=0.156 Sum_probs=37.7
Q ss_pred HHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccC
Q 025863 108 EEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSD 187 (247)
Q Consensus 108 ~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~ 187 (247)
..|...+++++++=|-+.. .+ .. .. ....+.+.+++++.+..+++-+....+-..+.+..+++. +
T Consensus 143 a~al~~~p~llllDEPt~~-LD-----~~--~~------~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~-~ 207 (220)
T cd03265 143 ARSLVHRPEVLFLDEPTIG-LD-----PQ--TR------AHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIID-H 207 (220)
T ss_pred HHHHhcCCCEEEEcCCccC-CC-----HH--HH------HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe-C
Confidence 3344557888888885432 11 11 11 255566777777667666654332222233456667774 7
Q ss_pred CcEEE
Q 025863 188 GKLIA 192 (247)
Q Consensus 188 G~il~ 192 (247)
|+++.
T Consensus 208 G~i~~ 212 (220)
T cd03265 208 GRIIA 212 (220)
T ss_pred CEEEE
Confidence 87653
No 156
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=25.28 E-value=1.6e+02 Score=25.84 Aligned_cols=78 Identities=17% Similarity=0.079 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEeccccCCCCCCCCcccccccccccCCCCeEEEe
Q 025863 148 PSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDT 227 (247)
Q Consensus 148 ~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~hL~~~~vP~~~~~~E~~~f~~G~~~~vf~~ 227 (247)
...+.|+.+|++.|-++++= +....-...|.--++--.+|+++..=.|-.... .|.--=..-.++++-+.
T Consensus 173 ~iMk~Lrrla~el~KtiviV-lHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~---------~~~L~eiydm~i~v~~i 242 (252)
T COG4604 173 QIMKILRRLADELGKTIVVV-LHDINFASCYSDHIVALKNGKVVKQGSPDEIIQ---------PEILSEIYDMDIPVEEI 242 (252)
T ss_pred HHHHHHHHHHHHhCCeEEEE-EecccHHHhhhhheeeecCCEEEecCCHHHhcC---------HHHHHHHhcCCceeEEe
Confidence 67889999999999988864 544443344433333337888764322222110 11100112345778888
Q ss_pred CCeEEecc
Q 025863 228 GLMFLLFY 235 (247)
Q Consensus 228 ~~grig~~ 235 (247)
++.|+++|
T Consensus 243 ~g~kIcvy 250 (252)
T COG4604 243 NGKKICVY 250 (252)
T ss_pred CCcEEEEE
Confidence 89888663
No 157
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=25.21 E-value=2.5e+02 Score=19.74 Aligned_cols=41 Identities=22% Similarity=0.167 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEE
Q 025863 150 TAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAK 193 (247)
Q Consensus 150 ~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~ 193 (247)
++.+.+.+++.|+.++.+ +.....+ .-.+++.+|+|..+..
T Consensus 67 v~~~~~~l~~~G~~~~~~--~~~~~~g-~~~~~~~DPdG~~ie~ 107 (108)
T PF12681_consen 67 VDALYERLKELGAEIVTE--PRDDPWG-QRSFYFIDPDGNRIEF 107 (108)
T ss_dssp HHHHHHHHHHTTSEEEEE--EEEETTS-EEEEEEE-TTS-EEEE
T ss_pred HHHHHHHHHHCCCeEeeC--CEEcCCC-eEEEEEECCCCCEEEe
Confidence 455666677889988765 3333322 2578899999987654
No 158
>cd07985 LPLAT_GPAT Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT. Lysophospholipid acyltransferase (LPLAT) superfamily member: glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB). LPLATs are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. This subgroup includes glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB).
Probab=25.15 E-value=2.4e+02 Score=24.77 Aligned_cols=60 Identities=13% Similarity=0.184 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcE
Q 025863 98 RNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKIT 163 (247)
Q Consensus 98 ~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~ 163 (247)
.|...++..++...+.+.-+.||||..=.--..+. .-...+. +...++.++.+|++.++.
T Consensus 99 ~~~~alk~~~~lLk~G~~~i~IfPEGtR~r~~~~g-~~~p~~F-----d~~~~~~~~~La~~s~~p 158 (235)
T cd07985 99 ANLATLKEMQQLLNEGGQLIWVAPSGGRDRPDANG-EWYPDPF-----DPSAVEMMRLLAQKSRVP 158 (235)
T ss_pred ccHHHHHHHHHHHHcCCeEEEEcCCCCCCCCCCCC-CccCCcc-----chHHHHHHHHHHHhcCCC
Confidence 56666666666554444447899998543221111 1111222 357889999999998885
No 159
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=25.15 E-value=2.7e+02 Score=21.98 Aligned_cols=22 Identities=27% Similarity=0.447 Sum_probs=16.7
Q ss_pred HHHHHHHHHHCCCeEEEcCCCC
Q 025863 103 ARRAIEEAAEKGAKLILLPEIW 124 (247)
Q Consensus 103 i~~~i~~Aa~~gadLVVfPE~~ 124 (247)
.+++++.|.+.++|+|.+.=+.
T Consensus 39 ~e~~v~aa~~~~adiVglS~L~ 60 (128)
T cd02072 39 QEEFIDAAIETDADAILVSSLY 60 (128)
T ss_pred HHHHHHHHHHcCCCEEEEeccc
Confidence 4667788888899999885443
No 160
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=25.11 E-value=3.5e+02 Score=25.77 Aligned_cols=53 Identities=23% Similarity=0.307 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHCCCeEE-EcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEe
Q 025863 100 IAHARRAIEEAAEKGAKLI-LLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGG 167 (247)
Q Consensus 100 ~~~i~~~i~~Aa~~gadLV-VfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~G 167 (247)
-+.+.+.++++.+.|+.-+ ++.+.+- ..+ .+ .....+.+.+.|+++|+.+++.
T Consensus 74 ~~~~~~~l~e~~~~gv~~~vi~s~gf~----e~g----~~-------g~~~~~~l~~~a~~~girvlGP 127 (447)
T TIGR02717 74 AKYVPQVVEECGEKGVKGAVVITAGFK----EVG----EE-------GAELEQELVEIARKYGMRLLGP 127 (447)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCcc----ccC----cc-------hHHHHHHHHHHHHHcCCEEEec
Confidence 4566777888888888765 4443321 110 00 0133467999999999998765
No 161
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.93 E-value=3.4e+02 Score=22.38 Aligned_cols=68 Identities=21% Similarity=0.253 Sum_probs=36.8
Q ss_pred HHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccCC
Q 025863 109 EAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDG 188 (247)
Q Consensus 109 ~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G 188 (247)
.|...+++++++=|-+.. . +.... ....+.+.+++++.+..+++-+.....-..+.+..+++. +|
T Consensus 143 ~al~~~p~~lllDEPt~~-L-----D~~~~--------~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~-~G 207 (213)
T cd03259 143 RALAREPSLLLLDEPLSA-L-----DAKLR--------EELREELKELQRELGITTIYVTHDQEEALALADRIAVMN-EG 207 (213)
T ss_pred HHHhcCCCEEEEcCCccc-C-----CHHHH--------HHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEE-CC
Confidence 334457888888884431 1 11111 256677777776667666654332222234556666674 67
Q ss_pred cEE
Q 025863 189 KLI 191 (247)
Q Consensus 189 ~il 191 (247)
+++
T Consensus 208 ~i~ 210 (213)
T cd03259 208 RIV 210 (213)
T ss_pred EEE
Confidence 654
No 162
>cd07987 LPLAT_MGAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this suubgroup are such LPLATs as 2-acylglycerol O-acyltransferase (MGAT), and similar proteins.
Probab=24.82 E-value=85 Score=26.20 Aligned_cols=49 Identities=10% Similarity=0.007 Sum_probs=27.8
Q ss_pred HHHHCCCeEEEcCCCCCCCCCC-CCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEE
Q 025863 109 EAAEKGAKLILLPEIWNSPYSH-DSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVG 166 (247)
Q Consensus 109 ~Aa~~gadLVVfPE~~l~g~~~-~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~ 166 (247)
++.++|-.++||||..-..... .+...... +...-+..+|.+.++.|+-
T Consensus 84 ~~L~~G~~l~ifPeGtr~~~~~~~~~~~~~~---------~~~~G~~~lA~~~~~pIvP 133 (212)
T cd07987 84 RLLREGELVLIFPGGAREALKSKREEYYLLW---------KKRKGFARLALRAGAPIVP 133 (212)
T ss_pred HHhcCCCEEEEEcCCHHHHhccCCCeEEEEE---------CCCcCHHHHHHHcCCCeEe
Confidence 3445788999999987642211 00000000 1222366788899998864
No 163
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=24.54 E-value=1.8e+02 Score=25.12 Aligned_cols=65 Identities=12% Similarity=0.013 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHH-HCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeee
Q 025863 99 NIAHARRAIEEAA-EKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSI 169 (247)
Q Consensus 99 n~~~i~~~i~~Aa-~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~ 169 (247)
+++.+.+.++++. +.++++||.=.....-............+ ..++..|+.+|+++++++++-+.
T Consensus 124 ~~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~------~~~~~~L~~la~~~~vtvll~sq 189 (271)
T cd01122 124 SMDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERKAL------DEIMTKLRGFATEHGIHITLVSH 189 (271)
T ss_pred CHHHHHHHHHHHHhcCCceEEEECCHHHHhccCCCchhHHHHH------HHHHHHHHHHHHHhCCEEEEEec
Confidence 3455555555443 45899988876433111000000111111 25677899999999999987643
No 164
>PRK14014 putative acyltransferase; Provisional
Probab=24.41 E-value=87 Score=28.28 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHCCCeEEEcCCCCC
Q 025863 100 IAHARRAIEEAAEKGAKLILLPEIWN 125 (247)
Q Consensus 100 ~~~i~~~i~~Aa~~gadLVVfPE~~l 125 (247)
.+.+.+.++...+.+..+++|||+.-
T Consensus 160 ~~~~~~a~~~~~~~~~~l~IFPEGTR 185 (301)
T PRK14014 160 LETTRRACEKFKRMPTTIVNFVEGTR 185 (301)
T ss_pred HHHHHHHHHHHhcCCcEEEEecccee
Confidence 44555555555556788999999965
No 165
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=24.37 E-value=3.2e+02 Score=22.64 Aligned_cols=69 Identities=16% Similarity=0.164 Sum_probs=37.4
Q ss_pred HHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccC
Q 025863 108 EEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSD 187 (247)
Q Consensus 108 ~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~ 187 (247)
..|.-.+++++++=|-+.. . +.... ....+.+.+++++.+.++++-+.....-..+.+..+++. +
T Consensus 157 aral~~~p~lllLDEPt~~-L-----D~~~~--------~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~-~ 221 (228)
T cd03257 157 ARALALNPKLLIADEPTSA-L-----DVSVQ--------AQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMY-A 221 (228)
T ss_pred HHHHhcCCCEEEecCCCCC-C-----CHHHH--------HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEe-C
Confidence 3344457888888885432 1 11111 256677777777656666554332222223456667775 6
Q ss_pred CcEE
Q 025863 188 GKLI 191 (247)
Q Consensus 188 G~il 191 (247)
|+++
T Consensus 222 G~i~ 225 (228)
T cd03257 222 GKIV 225 (228)
T ss_pred CEEE
Confidence 7754
No 166
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.25 E-value=3.4e+02 Score=22.82 Aligned_cols=71 Identities=17% Similarity=0.175 Sum_probs=38.7
Q ss_pred HHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEcc
Q 025863 107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGS 186 (247)
Q Consensus 107 i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p 186 (247)
+..|...+++++++=|-+.. .+ .... ....+.+.+++++.+.++++-+....+-..+.+..+++.
T Consensus 147 ia~al~~~p~llllDEPt~~-LD-----~~~~--------~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~- 211 (235)
T cd03261 147 LARALALDPELLLYDEPTAG-LD-----PIAS--------GVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLY- 211 (235)
T ss_pred HHHHHhcCCCEEEecCCccc-CC-----HHHH--------HHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEE-
Confidence 33444567888888884431 11 1111 255667777776656666654332222234556667775
Q ss_pred CCcEEE
Q 025863 187 DGKLIA 192 (247)
Q Consensus 187 ~G~il~ 192 (247)
+|+++.
T Consensus 212 ~G~i~~ 217 (235)
T cd03261 212 DGKIVA 217 (235)
T ss_pred CCeEEE
Confidence 687653
No 167
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=23.93 E-value=3.7e+02 Score=22.66 Aligned_cols=68 Identities=13% Similarity=0.101 Sum_probs=37.5
Q ss_pred HHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccCC
Q 025863 109 EAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDG 188 (247)
Q Consensus 109 ~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G 188 (247)
.|.-.+++++++=|-+. +.+ .. .. ....+.+.+++++.+.++++-+.....-..+.+..+++. +|
T Consensus 158 ~al~~~p~llllDEPt~-~LD-----~~--~~------~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~-~G 222 (243)
T TIGR02315 158 RALAQQPDLILADEPIA-SLD-----PK--TS------KQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLK-AG 222 (243)
T ss_pred HHHhcCCCEEEEeCCcc-cCC-----HH--HH------HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEE-CC
Confidence 34445788888887543 121 11 11 255667777766666766664332222234556667775 78
Q ss_pred cEE
Q 025863 189 KLI 191 (247)
Q Consensus 189 ~il 191 (247)
+++
T Consensus 223 ~i~ 225 (243)
T TIGR02315 223 EIV 225 (243)
T ss_pred EEE
Confidence 764
No 168
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=23.72 E-value=2.1e+02 Score=22.11 Aligned_cols=44 Identities=20% Similarity=0.071 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEe
Q 025863 150 TAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHR 195 (247)
Q Consensus 150 ~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~ 195 (247)
++.+.+.+++.|+.++.. +....+.....+++.+|+|.++..+.
T Consensus 97 ld~~~~~l~~~G~~~~~~--~~~~~~~~~~~~~~~DPdG~~iel~~ 140 (150)
T TIGR00068 97 VYKACERVRALGGNVVRE--PGPVKGGTTVIAFVEDPDGYKIELIQ 140 (150)
T ss_pred HHHHHHHHHHcCCccccC--CcccCCCceEEEEEECCCCCEEEEEE
Confidence 455666677888877643 22223333446788999998876654
No 169
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=23.66 E-value=2.4e+02 Score=25.44 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHCCCe-EEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhc-CcEEEEeeee
Q 025863 99 NIAHARRAIEEAAEKGAK-LILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLL-KITIVGGSIP 170 (247)
Q Consensus 99 n~~~i~~~i~~Aa~~gad-LVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~-~i~Iv~Gs~~ 170 (247)
+.+...++.+.|.+.|+| ++|.|-++... .+ ....+.+++++... ++.+++=.+|
T Consensus 88 ~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~---------~~--------~~l~~yf~~va~a~~~lPv~iYn~P 144 (309)
T cd00952 88 NTRDTIARTRALLDLGADGTMLGRPMWLPL---------DV--------DTAVQFYRDVAEAVPEMAIAIYANP 144 (309)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCCcCCCC---------CH--------HHHHHHHHHHHHhCCCCcEEEEcCc
Confidence 466777888888888998 56676554321 01 25667777777766 5766653333
No 170
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=23.36 E-value=2e+02 Score=24.80 Aligned_cols=64 Identities=16% Similarity=0.168 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHH--CCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeee
Q 025863 99 NIAHARRAIEEAAE--KGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSI 169 (247)
Q Consensus 99 n~~~i~~~i~~Aa~--~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~ 169 (247)
+++.+++.++.... .++++|+.==+-+....... ....+.+ ..+.+.|+++|+++++++++-+-
T Consensus 113 ~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~-~~~~~~~------~~i~~~Lk~lA~~~~i~vi~~sQ 178 (259)
T PF03796_consen 113 TIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSS-DNRRQEI------GEISRELKALAKELNIPVIALSQ 178 (259)
T ss_dssp BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSS-SCCHHHH------HHHHHHHHHHHHHHTSEEEEEEE
T ss_pred CHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCC-CCHHHHH------HHHHHHHHHHHHHcCCeEEEccc
Confidence 34555555554443 56777765333221111000 0111222 36788999999999999998754
No 171
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=23.29 E-value=2.2e+02 Score=24.99 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEE
Q 025863 102 HARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIV 165 (247)
Q Consensus 102 ~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv 165 (247)
-++++++++++.|+|-|++|-+.. +..+.+.+.++++|+..+
T Consensus 103 G~e~f~~~~~~aGvdgviipDlp~----------------------ee~~~~~~~~~~~gl~~i 144 (256)
T TIGR00262 103 GVEEFYAKCKEVGVDGVLVADLPL----------------------EESGDLVEAAKKHGVKPI 144 (256)
T ss_pred hHHHHHHHHHHcCCCEEEECCCCh----------------------HHHHHHHHHHHHCCCcEE
Confidence 345667777777888888885421 223456667788876543
No 172
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=23.26 E-value=2.6e+02 Score=21.70 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=25.5
Q ss_pred HHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEe
Q 025863 153 LSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHR 195 (247)
Q Consensus 153 l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~ 195 (247)
..+..++.|+.+..|. .+.+..--.+.++.+|+|..+..|.
T Consensus 84 ~~~~l~~~Gv~i~~~p--~~~~~~~~~~~yf~DPdG~~iEl~~ 124 (143)
T cd07243 84 AGDIISMNDVSIDIGP--TRHGITRGQTIYFFDPSGNRNETFA 124 (143)
T ss_pred HHHHHHHcCCceEECC--cCCCCCCceEEEEECCCCCEEEEec
Confidence 4445567888877662 2222112245788899999887755
No 173
>PF13342 Toprim_Crpt: C-terminal repeat of topoisomerase
Probab=23.15 E-value=1.9e+02 Score=19.82 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=28.4
Q ss_pred HHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccCCcEE
Q 025863 152 MLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLI 191 (247)
Q Consensus 152 ~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il 191 (247)
.+.++..+-...++-| . ....|+-|++.++++.++++.
T Consensus 20 ~~~~Ll~~gkT~~ikG-F-~SK~Gk~F~A~L~l~~~~~v~ 57 (62)
T PF13342_consen 20 EVKELLEKGKTGLIKG-F-KSKKGKPFDAYLVLDDDKKVK 57 (62)
T ss_pred HHHHHHHcCCccCccC-c-ccCCCCEEeEEEEEcCCCeEE
Confidence 4666777777777888 4 346788999999999777643
No 174
>PRK12677 xylose isomerase; Provisional
Probab=22.89 E-value=5.9e+02 Score=23.80 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHCCCeE-EEcC
Q 025863 97 ERNIAHARRAIEEAAEKGAKL-ILLP 121 (247)
Q Consensus 97 ~~n~~~i~~~i~~Aa~~gadL-VVfP 121 (247)
+..++.+++.|+.|++-|++. ++||
T Consensus 110 ~~Ai~~~~r~IdlA~eLGa~~Vvv~~ 135 (384)
T PRK12677 110 RYALRKVLRNIDLAAELGAKTYVMWG 135 (384)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEee
Confidence 445778899999999999985 5553
No 175
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=22.79 E-value=3.5e+02 Score=22.23 Aligned_cols=67 Identities=16% Similarity=0.164 Sum_probs=35.5
Q ss_pred HHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccCCc
Q 025863 110 AAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGK 189 (247)
Q Consensus 110 Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~ 189 (247)
|.-.+++++++=|-+.. . +.... ....+.+.+++++.+.++++-+....+-..+.+..+++. +|+
T Consensus 144 al~~~p~llllDEPt~~-L-----D~~~~--------~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~-~g~ 208 (213)
T cd03301 144 AIVREPKVFLMDEPLSN-L-----DAKLR--------VQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMN-DGQ 208 (213)
T ss_pred HHhcCCCEEEEcCCccc-C-----CHHHH--------HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEE-CCE
Confidence 33457788888774431 1 11111 256677777777666666654332111123445666664 676
Q ss_pred EE
Q 025863 190 LI 191 (247)
Q Consensus 190 il 191 (247)
++
T Consensus 209 ~~ 210 (213)
T cd03301 209 IQ 210 (213)
T ss_pred EE
Confidence 54
No 176
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=22.71 E-value=2.8e+02 Score=24.90 Aligned_cols=63 Identities=21% Similarity=0.195 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEE
Q 025863 98 RNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVG 166 (247)
Q Consensus 98 ~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~ 166 (247)
.|.+..+++|+-|++.|-+-|++=|.|-....... .+..... ...-++.+.+.|++.||-|.+
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~-~d~~~~~-----~~~dl~elv~Ya~~KgVgi~l 91 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDD-FDFTKPI-----PDFDLPELVDYAKEKGVGIWL 91 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT---TT-B------TT--HHHHHHHHHHTT-EEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecccccccccccc-ccccccC-----CccCHHHHHHHHHHcCCCEEE
Confidence 37899999999999999999999887753111111 1111221 135567788888888855543
No 177
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=22.56 E-value=2.2e+02 Score=25.36 Aligned_cols=54 Identities=20% Similarity=0.175 Sum_probs=29.5
Q ss_pred HHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEE
Q 025863 104 RRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITI 164 (247)
Q Consensus 104 ~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~I 164 (247)
.++++...+.|+|+|.+.|-+.+.... +...+.+.. .++.+++-+..++.+..+
T Consensus 171 ~~~~~~~~~~G~d~i~i~d~~~~~~~i-sp~~f~e~~------~p~~k~i~~~i~~~g~~~ 224 (330)
T cd03465 171 IRYADALIEAGADGIYISDPWASSSIL-SPEDFKEFS------LPYLKKVFDAIKALGGPV 224 (330)
T ss_pred HHHHHHHHHhCCCEEEEeCCccccCCC-CHHHHHHHh------hHHHHHHHHHHHHcCCce
Confidence 333344445699999999976654311 112222322 256666666666655543
No 178
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=22.46 E-value=3.1e+02 Score=25.00 Aligned_cols=71 Identities=21% Similarity=0.261 Sum_probs=40.3
Q ss_pred HHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEcc
Q 025863 107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGS 186 (247)
Q Consensus 107 i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p 186 (247)
+..|...+++++++=|-+.. .+ .... ....+.+.+++++.+.++++-+.....-..+.+..++++
T Consensus 151 lAraL~~~p~iLlLDEPts~-LD-----~~~~--------~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~- 215 (343)
T PRK11153 151 IARALASNPKVLLCDEATSA-LD-----PATT--------RSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVID- 215 (343)
T ss_pred HHHHHHcCCCEEEEeCCccc-CC-----HHHH--------HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-
Confidence 34444568899999885432 21 1111 256677888877767777665432222234456666674
Q ss_pred CCcEEE
Q 025863 187 DGKLIA 192 (247)
Q Consensus 187 ~G~il~ 192 (247)
+|+++.
T Consensus 216 ~G~i~~ 221 (343)
T PRK11153 216 AGRLVE 221 (343)
T ss_pred CCEEEE
Confidence 677653
No 179
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=22.38 E-value=2.3e+02 Score=20.32 Aligned_cols=43 Identities=19% Similarity=0.243 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEE
Q 025863 150 TAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIA 192 (247)
Q Consensus 150 ~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~ 192 (247)
++.+.+.+++.|+.++.+...........-+.++.+|+|..+.
T Consensus 79 ~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve 121 (125)
T cd07253 79 IDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIE 121 (125)
T ss_pred HHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEE
Confidence 6667777778898876552111111122356789999998764
No 180
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.24 E-value=3.6e+02 Score=22.56 Aligned_cols=68 Identities=21% Similarity=0.248 Sum_probs=37.4
Q ss_pred HHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccCCc
Q 025863 110 AAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGK 189 (247)
Q Consensus 110 Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~ 189 (247)
|...+++++++=|-+. |.+ .... ....+.+.+++++.+.++++-+.....-..+.+..+++. +|+
T Consensus 154 al~~~p~lllLDEP~~-~LD-----~~~~--------~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~-~G~ 218 (233)
T cd03258 154 ALANNPKVLLCDEATS-ALD-----PETT--------QSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVME-KGE 218 (233)
T ss_pred HHhcCCCEEEecCCCC-cCC-----HHHH--------HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE-CCE
Confidence 3445788888888443 221 1111 255667777776666666654332222234456667774 787
Q ss_pred EEE
Q 025863 190 LIA 192 (247)
Q Consensus 190 il~ 192 (247)
++.
T Consensus 219 i~~ 221 (233)
T cd03258 219 VVE 221 (233)
T ss_pred EEE
Confidence 653
No 181
>PRK06724 hypothetical protein; Provisional
Probab=22.22 E-value=3.3e+02 Score=20.81 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCcEEEEeeeeee-c--CCeeEEEEEEEccCCcEEEE
Q 025863 148 PSTAMLSEVARLLKITIVGGSIPER-S--GDRLYNTCCVFGSDGKLIAK 193 (247)
Q Consensus 148 ~~~~~l~~~Ar~~~i~Iv~Gs~~e~-~--~~~~yNsa~li~p~G~il~~ 193 (247)
+-++.+.+.+++.|+.++.+ +.. . ..+.| ++++.+|+|..+..
T Consensus 75 ~dvd~~~~~l~~~G~~~~~~--p~~~~~~~~g~~-~~~f~DPdG~~iEl 120 (128)
T PRK06724 75 KVVDEVAEFLSSTKIKIIRG--PMEMNHYSEGYY-TIDFYDPNGFIIEV 120 (128)
T ss_pred HHHHHHHHHHHHCCCEEecC--CcccCCCCCCEE-EEEEECCCCCEEEE
Confidence 55677888888999988755 222 1 12333 67789999987653
No 182
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.08 E-value=3.9e+02 Score=22.52 Aligned_cols=69 Identities=16% Similarity=0.178 Sum_probs=37.6
Q ss_pred HHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccCC
Q 025863 109 EAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDG 188 (247)
Q Consensus 109 ~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G 188 (247)
.|...+++++++=|-+.. .+ .... ....+.+.+++++.+.++++-+....+-..+.+..+++. +|
T Consensus 149 ~al~~~p~llllDEP~~~-LD-----~~~~--------~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~-~G 213 (239)
T cd03296 149 RALAVEPKVLLLDEPFGA-LD-----AKVR--------KELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMN-KG 213 (239)
T ss_pred HHHhcCCCEEEEcCCccc-CC-----HHHH--------HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE-CC
Confidence 344457889998884431 21 1111 255667777776656666554332222223455666774 78
Q ss_pred cEEE
Q 025863 189 KLIA 192 (247)
Q Consensus 189 ~il~ 192 (247)
+++.
T Consensus 214 ~i~~ 217 (239)
T cd03296 214 RIEQ 217 (239)
T ss_pred eEEE
Confidence 7654
No 183
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=22.07 E-value=3.2e+02 Score=23.24 Aligned_cols=58 Identities=12% Similarity=0.057 Sum_probs=33.5
Q ss_pred HHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeee
Q 025863 103 ARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSI 169 (247)
Q Consensus 103 i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~ 169 (247)
+..+++++...++++||+=..... +..+. .+.. .. ...++.|.+++++.++.+++-+.
T Consensus 100 ~~~l~~~~~~~~~~lvviDpl~~~-~~~~~-~d~~-~~------~~~~~~L~~~a~~~g~avl~v~H 157 (239)
T cd01125 100 FERIIEQLLIRRIDLVVIDPLVSF-HGVSE-NDNG-AM------DAVIKALRRIAAQTGAAILLVHH 157 (239)
T ss_pred HHHHHHHHHhcCCCEEEECChHHh-CCCCc-CCHH-HH------HHHHHHHHHHHHHhCCEEEEEec
Confidence 344444444578999999854321 11111 1111 11 25778889999999998877543
No 184
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=21.94 E-value=3.2e+02 Score=24.12 Aligned_cols=55 Identities=18% Similarity=0.261 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHCCCeE-EEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeee
Q 025863 99 NIAHARRAIEEAAEKGAKL-ILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIP 170 (247)
Q Consensus 99 n~~~i~~~i~~Aa~~gadL-VVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~ 170 (247)
+.+...++++.|.+.|+|- ++.|-.+... .+ ....+.+++++...++.+++-.+|
T Consensus 81 ~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~---------~~--------~~i~~~~~~ia~~~~~pv~lYn~P 136 (292)
T PRK03170 81 STAEAIELTKFAEKAGADGALVVTPYYNKP---------TQ--------EGLYQHFKAIAEATDLPIILYNVP 136 (292)
T ss_pred hHHHHHHHHHHHHHcCCCEEEECCCcCCCC---------CH--------HHHHHHHHHHHhcCCCCEEEEECc
Confidence 5677788888888889985 4445443211 01 256777888887777777765344
No 185
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=21.79 E-value=2.2e+02 Score=29.87 Aligned_cols=44 Identities=11% Similarity=0.129 Sum_probs=29.7
Q ss_pred HHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEe
Q 025863 109 EAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGG 167 (247)
Q Consensus 109 ~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~G 167 (247)
++.++|-.++||||...+.-. .+ .++..-...+|++.++.|+-=
T Consensus 506 ~~l~~g~~~~ifPeGt~~~~~---------~~------~~~~~g~~~~a~~~~~~i~pv 549 (1146)
T PRK08633 506 KALDDGEVVCIFPEGAITRNG---------QL------NEFKRGFELIVKGTDVPIIPF 549 (1146)
T ss_pred HHHhCCCEEEEECCcCCCCCC---------Cc------cchhHHHHHHHHHCCCCEEEE
Confidence 555678899999999754211 01 144555777888999998753
No 186
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=21.74 E-value=3.4e+02 Score=23.10 Aligned_cols=70 Identities=10% Similarity=0.088 Sum_probs=38.8
Q ss_pred HHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEcc
Q 025863 107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGS 186 (247)
Q Consensus 107 i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p 186 (247)
+..|...+++++++=|-+.. .+ .... ....+.|.++.++.+.++++-+....+-..+.+..+++.
T Consensus 164 la~al~~~p~llllDEPt~~-LD-----~~~~--------~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~- 228 (255)
T PRK11300 164 IARCMVTQPEILMLDEPAAG-LN-----PKET--------KELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVN- 228 (255)
T ss_pred HHHHHhcCCCEEEEcCCccC-CC-----HHHH--------HHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEE-
Confidence 34444568899999885432 21 1111 245566777766657776664332222223445666774
Q ss_pred CCcEE
Q 025863 187 DGKLI 191 (247)
Q Consensus 187 ~G~il 191 (247)
+|+++
T Consensus 229 ~g~i~ 233 (255)
T PRK11300 229 QGTPL 233 (255)
T ss_pred CCeEE
Confidence 78765
No 187
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=21.39 E-value=4.9e+02 Score=21.80 Aligned_cols=72 Identities=18% Similarity=0.182 Sum_probs=37.3
Q ss_pred HHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccC
Q 025863 108 EEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSD 187 (247)
Q Consensus 108 ~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~ 187 (247)
..|...+++++++=|-+. +.+ . +.. ....+.+.+++++.+.++++-+.....-.. .+..+++. +
T Consensus 157 a~al~~~p~lllLDEPt~-~LD-----~--~~~------~~l~~~l~~~~~~~g~tvii~sH~~~~~~~-~~~~~~l~-~ 220 (233)
T PRK11629 157 ARALVNNPRLVLADEPTG-NLD-----A--RNA------DSIFQLLGELNRLQGTAFLVVTHDLQLAKR-MSRQLEMR-D 220 (233)
T ss_pred HHHHhcCCCEEEEeCCCC-CCC-----H--HHH------HHHHHHHHHHHHhCCCEEEEEeCCHHHHHh-hCEEEEEE-C
Confidence 334456788888888433 121 1 111 255566777766556666554332221112 24455664 7
Q ss_pred CcEEEEEe
Q 025863 188 GKLIAKHR 195 (247)
Q Consensus 188 G~il~~Y~ 195 (247)
|+++..|.
T Consensus 221 G~i~~~~~ 228 (233)
T PRK11629 221 GRLTAELS 228 (233)
T ss_pred CEEEEEec
Confidence 88765443
No 188
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=21.36 E-value=4.7e+02 Score=21.59 Aligned_cols=67 Identities=12% Similarity=0.113 Sum_probs=36.0
Q ss_pred HHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccCCc
Q 025863 110 AAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGK 189 (247)
Q Consensus 110 Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~ 189 (247)
|...+++++++=|-+.. .+ . +. .....+.+.++.++.+.++++-+.....-..+.+..+++. +|+
T Consensus 142 al~~~p~llllDEPt~~-LD-----~--~~------~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~-~g~ 206 (213)
T TIGR01277 142 CLVRPNPILLLDEPFSA-LD-----P--LL------REEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVS-QGK 206 (213)
T ss_pred HHhcCCCEEEEcCCCcc-CC-----H--HH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEE-CCe
Confidence 33457888888775432 11 1 11 1256677777776666666654332222123445566674 677
Q ss_pred EE
Q 025863 190 LI 191 (247)
Q Consensus 190 il 191 (247)
+.
T Consensus 207 i~ 208 (213)
T TIGR01277 207 IK 208 (213)
T ss_pred EE
Confidence 64
No 189
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=21.33 E-value=4e+02 Score=22.84 Aligned_cols=69 Identities=14% Similarity=0.161 Sum_probs=37.7
Q ss_pred HHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccCC
Q 025863 109 EAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDG 188 (247)
Q Consensus 109 ~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G 188 (247)
.|...+++++++=|-+.. . +.... ....+.+.+++++.+..+++-+.....-..+.+..+++. +|
T Consensus 164 ral~~~p~llllDEPt~~-L-----D~~~~--------~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~-~g 228 (258)
T PRK11701 164 RNLVTHPRLVFMDEPTGG-L-----DVSVQ--------ARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMK-QG 228 (258)
T ss_pred HHHhcCCCEEEEcCCccc-C-----CHHHH--------HHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEE-CC
Confidence 334457888888875431 1 11111 245566777776667777664332222234566677775 78
Q ss_pred cEEE
Q 025863 189 KLIA 192 (247)
Q Consensus 189 ~il~ 192 (247)
+++.
T Consensus 229 ~i~~ 232 (258)
T PRK11701 229 RVVE 232 (258)
T ss_pred EEEE
Confidence 7653
No 190
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=21.32 E-value=3.4e+02 Score=24.55 Aligned_cols=71 Identities=15% Similarity=0.067 Sum_probs=39.3
Q ss_pred HHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEcc
Q 025863 107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGS 186 (247)
Q Consensus 107 i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p 186 (247)
+..|...+++++++=|-+.. . +.... ..+.+.|.++.++.++++++-|.....-..+.+..+++.
T Consensus 169 iArAL~~~P~llilDEPts~-L-----D~~~~--------~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~- 233 (330)
T PRK15093 169 IAIALANQPRLLIADEPTNA-M-----EPTTQ--------AQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLY- 233 (330)
T ss_pred HHHHHHCCCCEEEEeCCCCc-C-----CHHHH--------HHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEE-
Confidence 34444567888888875432 1 11111 367778888877778877765432222123344455553
Q ss_pred CCcEEE
Q 025863 187 DGKLIA 192 (247)
Q Consensus 187 ~G~il~ 192 (247)
+|+++.
T Consensus 234 ~G~ive 239 (330)
T PRK15093 234 CGQTVE 239 (330)
T ss_pred CCEEEE
Confidence 677654
No 191
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=21.31 E-value=3.5e+02 Score=20.13 Aligned_cols=47 Identities=17% Similarity=0.100 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccCCcEEEEEecc
Q 025863 149 STAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKI 197 (247)
Q Consensus 149 ~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~G~il~~Y~K~ 197 (247)
.++.+.+.+++.|+.++.. +...+.......++.+|+|..+..+...
T Consensus 72 ~~~~~~~~l~~~G~~i~~~--~~~~~~~~~~~~~~~DPdG~~iei~~~~ 118 (131)
T cd08343 72 DILRAADRLAANGIQIEFG--PGRHGPGNNLFLYFRDPDGNRVELSAEM 118 (131)
T ss_pred HHHHHHHHHHHcCCeeEEC--CCccCCCCcEEEEEECCCCCEEEEEcCC
Confidence 3455666677888987644 2222222234678999999887665433
No 192
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=21.23 E-value=2.7e+02 Score=24.53 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHCCCeEE-EcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeee
Q 025863 99 NIAHARRAIEEAAEKGAKLI-LLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIP 170 (247)
Q Consensus 99 n~~~i~~~i~~Aa~~gadLV-VfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~ 170 (247)
+.+...++++.|.+.|+|-| +.|=++.. . . .....+.+++++...++.+++=..+
T Consensus 81 st~~~i~~a~~a~~~Gad~v~v~~P~~~~-~--------s--------~~~l~~y~~~ia~~~~~pi~iYn~P 136 (289)
T PF00701_consen 81 STEEAIELARHAQDAGADAVLVIPPYYFK-P--------S--------QEELIDYFRAIADATDLPIIIYNNP 136 (289)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEEESTSSS-C--------C--------HHHHHHHHHHHHHHSSSEEEEEEBH
T ss_pred hHHHHHHHHHHHhhcCceEEEEecccccc-c--------h--------hhHHHHHHHHHHhhcCCCEEEEECC
Confidence 36667777777888899954 45443321 1 0 1367788889998888988875344
No 193
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=21.14 E-value=1.8e+02 Score=22.59 Aligned_cols=44 Identities=25% Similarity=0.159 Sum_probs=29.6
Q ss_pred ceEEEEEecccccCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCC
Q 025863 82 KFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSP 127 (247)
Q Consensus 82 ~~kValvQ~~i~~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g 127 (247)
..+|+.+...-. .-...+-..+++..+-.++++.|++|+..++.
T Consensus 5 ~~~v~~~~s~~~--~i~~~qdalDLi~~~~~~~~~~i~l~~~~l~~ 48 (113)
T PF13788_consen 5 GIRVAEVSSDEP--LISDEQDALDLIGTAYEHGADRIILPKEALSE 48 (113)
T ss_pred CeEEEEEeCCCC--eecchhHHHHHHHHHHHcCCCEEEEEhHHCCH
Confidence 356666665522 11224456667777778899999999998864
No 194
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.02 E-value=3.8e+02 Score=23.40 Aligned_cols=71 Identities=11% Similarity=0.151 Sum_probs=39.4
Q ss_pred HHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEcc
Q 025863 107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGS 186 (247)
Q Consensus 107 i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p 186 (247)
+..|....++++++=|-+.. .+ .. . .....+.+.++.++.+.++++-+....+-..+.+..+++.
T Consensus 148 laraL~~~p~llilDEPt~g-LD-----~~--~------~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~- 212 (277)
T PRK13652 148 IAGVIAMEPQVLVLDEPTAG-LD-----PQ--G------VKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMD- 212 (277)
T ss_pred HHHHHHcCCCEEEEeCCccc-CC-----HH--H------HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEE-
Confidence 44455567888888885432 11 11 1 1256677777777667777664332112123455666774
Q ss_pred CCcEEE
Q 025863 187 DGKLIA 192 (247)
Q Consensus 187 ~G~il~ 192 (247)
+|+++.
T Consensus 213 ~G~i~~ 218 (277)
T PRK13652 213 KGRIVA 218 (277)
T ss_pred CCeEEE
Confidence 677653
No 195
>cd07991 LPLAT_LPCAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LPCAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lysophosphatidylcholine acyltransferase 1 (LPCAT-1), glycerol-3-phosphate acyltransferase 3 (GPAT3), and similar sequences.
Probab=20.97 E-value=1.2e+02 Score=25.31 Aligned_cols=14 Identities=14% Similarity=0.290 Sum_probs=11.8
Q ss_pred CCCeEEEcCCCCCC
Q 025863 113 KGAKLILLPEIWNS 126 (247)
Q Consensus 113 ~gadLVVfPE~~l~ 126 (247)
+|-.+++|||...+
T Consensus 96 ~g~~v~iFPEGtrs 109 (211)
T cd07991 96 NWPPILIFPEGTTT 109 (211)
T ss_pred CCCeEEEecCcccc
Confidence 46899999999765
No 196
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=20.74 E-value=3.7e+02 Score=24.42 Aligned_cols=72 Identities=17% Similarity=0.112 Sum_probs=39.9
Q ss_pred HHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEcc
Q 025863 107 IEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGS 186 (247)
Q Consensus 107 i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p 186 (247)
|..|...+++|+++=|-+. +. +... ...+++.|.++.++.++.+++-+.....-..+.+..+++.
T Consensus 172 IArAL~~~P~llilDEPts-~L-----D~~~--------~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~- 236 (330)
T PRK09473 172 IAMALLCRPKLLIADEPTT-AL-----DVTV--------QAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMY- 236 (330)
T ss_pred HHHHHHcCCCEEEEeCCCc-cC-----CHHH--------HHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEE-
Confidence 3444455777777777332 11 1111 1366778888888778877765332111123445666663
Q ss_pred CCcEEEE
Q 025863 187 DGKLIAK 193 (247)
Q Consensus 187 ~G~il~~ 193 (247)
+|+++..
T Consensus 237 ~G~ive~ 243 (330)
T PRK09473 237 AGRTMEY 243 (330)
T ss_pred CCEEEEE
Confidence 7887654
No 197
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=20.50 E-value=2.8e+02 Score=26.05 Aligned_cols=62 Identities=19% Similarity=0.197 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHH-HCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEee
Q 025863 100 IAHARRAIEEAA-EKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGS 168 (247)
Q Consensus 100 ~~~i~~~i~~Aa-~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs 168 (247)
++.++..++++. +.|+++||.==+-+...... .......+ ..+.+.|+.+|+++++++++-+
T Consensus 290 ~~~i~~~i~~~~~~~~~~~vvID~l~~i~~~~~-~~~r~~~i------~~i~~~Lk~lA~e~~i~vi~ls 352 (434)
T TIGR00665 290 ITELRAKARRLKREHGLGLIVIDYLQLMSGSGR-SENRQQEV------SEISRSLKALAKELNVPVIALS 352 (434)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcchHhcCCCCC-CCCHHHHH------HHHHHHHHHHHHHhCCeEEEEe
Confidence 344444444433 45788888754432211000 00111112 3677889999999999998864
No 198
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=20.47 E-value=2.7e+02 Score=24.53 Aligned_cols=43 Identities=19% Similarity=0.277 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEE
Q 025863 102 HARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVG 166 (247)
Q Consensus 102 ~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~ 166 (247)
-++++++++++.|+|=++.|-+.+ +..+.+.+.++++|+..+.
T Consensus 105 G~e~f~~~~~~aGvdGviipDLp~----------------------ee~~~~~~~~~~~gl~~I~ 147 (258)
T PRK13111 105 GVERFAADAAEAGVDGLIIPDLPP----------------------EEAEELRAAAKKHGLDLIF 147 (258)
T ss_pred CHHHHHHHHHHcCCcEEEECCCCH----------------------HHHHHHHHHHHHcCCcEEE
Confidence 345566666666777777774321 3445677788899887765
No 199
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=20.29 E-value=3.8e+02 Score=23.19 Aligned_cols=70 Identities=14% Similarity=0.100 Sum_probs=38.7
Q ss_pred HHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeeeeeecCCeeEEEEEEEccC
Q 025863 108 EEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSD 187 (247)
Q Consensus 108 ~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~~e~~~~~~yNsa~li~p~ 187 (247)
..|...+++++++=|-+.. .+ . +.. ....+.+.+++++.+.++++-+....+-..+.+..++++ +
T Consensus 161 aral~~~p~lllLDEPt~~-LD-----~--~~~------~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~-~ 225 (267)
T PRK15112 161 ARALILRPKVIIADEALAS-LD-----M--SMR------SQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMH-Q 225 (267)
T ss_pred HHHHHhCCCEEEEcCCccc-CC-----H--HHH------HHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEE-C
Confidence 3344557888888885432 11 1 111 255667777776667666654332222234556777775 6
Q ss_pred CcEEE
Q 025863 188 GKLIA 192 (247)
Q Consensus 188 G~il~ 192 (247)
|+++.
T Consensus 226 G~i~~ 230 (267)
T PRK15112 226 GEVVE 230 (267)
T ss_pred CEEEe
Confidence 87653
No 200
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=20.26 E-value=2.1e+02 Score=23.38 Aligned_cols=69 Identities=13% Similarity=0.217 Sum_probs=39.3
Q ss_pred EEEEEecccc-----cCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHH
Q 025863 84 KVGLCQLSVT-----ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR 158 (247)
Q Consensus 84 kValvQ~~i~-----~d~~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar 158 (247)
.+-++++..- .+.++..+.++++++++.+.+++++++.- ..+.. + .+... ..+-+.++++|+
T Consensus 73 d~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~ill~~-~~P~~----~---~~~~~-----~~~~~~~~~~a~ 139 (191)
T PRK10528 73 RWVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLLMQI-RLPAN----Y---GRRYN-----EAFSAIYPKLAK 139 (191)
T ss_pred CEEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEe-ecCCc----c---cHHHH-----HHHHHHHHHHHH
Confidence 4555665542 24566666777777777667888877631 11111 0 01110 145566888999
Q ss_pred hcCcEEE
Q 025863 159 LLKITIV 165 (247)
Q Consensus 159 ~~~i~Iv 165 (247)
++++..+
T Consensus 140 ~~~v~~i 146 (191)
T PRK10528 140 EFDIPLL 146 (191)
T ss_pred HhCCCcc
Confidence 9998765
No 201
>PRK05748 replicative DNA helicase; Provisional
Probab=20.21 E-value=3.1e+02 Score=25.99 Aligned_cols=63 Identities=24% Similarity=0.195 Sum_probs=35.4
Q ss_pred HHHHHHHHHHH-HC-CCeEEEcCCCCCCCCCCCCcchhhhhhccCCCChHHHHHHHHHHHhcCcEEEEeee
Q 025863 101 AHARRAIEEAA-EK-GAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSI 169 (247)
Q Consensus 101 ~~i~~~i~~Aa-~~-gadLVVfPE~~l~g~~~~~~~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~Iv~Gs~ 169 (247)
..+...+++.. +. ++++||.==+-+..............+ +.+.+.|+.+|+++++++++-+-
T Consensus 299 ~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~~~~~r~~~i------~~i~~~LK~lAke~~i~vi~lsQ 363 (448)
T PRK05748 299 TEIRARCRRLAQEHGGLGLILIDYLQLIQGSGRSGENRQQEV------SEISRSLKALAKELKVPVIALSQ 363 (448)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEccchhcCCCCCCCcCHHHHH------HHHHHHHHHHHHHhCCeEEEecc
Confidence 34444444433 33 688887755444321111000111122 47788999999999999998753
No 202
>TIGR03586 PseI pseudaminic acid synthase.
Probab=20.03 E-value=2.4e+02 Score=25.99 Aligned_cols=71 Identities=20% Similarity=0.133 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCCC---------CCCCC--Cc--chhhhhhccCCCChHHHHHHHHHHHhcCcE
Q 025863 97 ERNIAHARRAIEEAAEKGAKLILLPEIWNS---------PYSHD--SF--PVYAEDIDAGGDASPSTAMLSEVARLLKIT 163 (247)
Q Consensus 97 ~~n~~~i~~~i~~Aa~~gadLVVfPE~~l~---------g~~~~--~~--~~~~e~~~~~~~~~~~~~~l~~~Ar~~~i~ 163 (247)
...++..+++++.|++.|||.|=|.=...- .|... .+ ..+.+.........+....|.+.++++|+.
T Consensus 13 ~G~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~ 92 (327)
T TIGR03586 13 NGSLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGLT 92 (327)
T ss_pred CChHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCCc
Confidence 346889999999999999998766421100 01000 00 011111111122346677888889999999
Q ss_pred EEEe
Q 025863 164 IVGG 167 (247)
Q Consensus 164 Iv~G 167 (247)
++.-
T Consensus 93 ~~st 96 (327)
T TIGR03586 93 IFSS 96 (327)
T ss_pred EEEc
Confidence 8754
Done!