BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025864
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 137 bits (346), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 116/225 (51%), Gaps = 8/225 (3%)
Query: 19 KALVVEFITTFLFVFVGVGSAMAADKLVGNXXXXXXXXXXXXXXXXXXMI----SAGHIS 74
+A+V EF+ T LFVF+ +GSA+ VGN + S GHIS
Sbjct: 12 RAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHIS 71
Query: 75 GGHLNPAVTLGLLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXTGGL---STPVHTLAS 131
G HLNPAVTLGLL I+ FR+++Y I Q T L S + LA
Sbjct: 72 GAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGNSLGRNDLAD 131
Query: 132 GVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGAS 191
GV QG+ EII T L+ V AT D ++ + G PL G V L ++G
Sbjct: 132 GVNSGQGLGIEIIGTLQLVLCVLAT-TDRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCG 190
Query: 192 MNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVRS 236
+NPARSFG A+++ ++++HW++WVGP IGG LA IY+ RS
Sbjct: 191 INPARSFGSAVITHNFSNHWIFWVGPFIGGALAVLIYDFILAPRS 235
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 115/227 (50%), Gaps = 10/227 (4%)
Query: 19 KALVVEFITTFLFVFVGVGSAM------AADKLVGNXXXXXXXXXXXXXXXXXXMISAGH 72
+A+V EF+ LF+F+ +GSA+ +++ G S GH
Sbjct: 12 RAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGH 71
Query: 73 ISGGHLNPAVTLGLLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXTGGL---STPVHTL 129
ISG HLNPAVTLGLL I+ R+I+Y I Q T L S ++ L
Sbjct: 72 ISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNAL 131
Query: 130 ASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSG 189
A GV QG+ EII T L+ V AT D ++ + G GPL GF V L ++G
Sbjct: 132 APGVNSGQGLGIEIIGTLQLVLCVLAT-TDRRRRDLGGSGPLAIGFSVALGHLLAIDYTG 190
Query: 190 ASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVRS 236
+NPARSFG ++++ ++ DHW++WVGP IG LA IY+ RS
Sbjct: 191 CGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFILAPRS 237
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 127 bits (320), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 120/235 (51%), Gaps = 13/235 (5%)
Query: 19 KALVVEFITTFLFVFVGVGSAMAADKLVGNXXXXXXXXXXXXXXXXXXMISA-GHISGGH 77
KA+ EF+ +FV + VGS + M+ GHISGGH
Sbjct: 14 KAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGH 73
Query: 78 LNPAVTLGLLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXT-----GGLS-TPVH-TLA 130
+NPAVT+ ++ I+ +S+ Y Q T GGL T VH L
Sbjct: 74 INPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLT 133
Query: 131 SGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGA 190
+G G++ E+I+TF L+FT++A+ D K+ + G L GF V L ++GA
Sbjct: 134 AG----HGLLVELIITFQLVFTIFAS-CDSKRTDVTGSVALAIGFSVAIGHLFAINYTGA 188
Query: 191 SMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVRSHVPIPYEEA 245
SMNPARSFGPA++ G+W +HW+YWVGP+IG LAG +YE+ F + +EA
Sbjct: 189 SMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDVELKRRLKEA 243
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 127 bits (319), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 120/235 (51%), Gaps = 13/235 (5%)
Query: 19 KALVVEFITTFLFVFVGVGSAMAADKLVGNXXXXXXXXXXXXXXXXXXMISA-GHISGGH 77
KA+ EF+ +FV + VGS + M+ GHISGGH
Sbjct: 14 KAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGH 73
Query: 78 LNPAVTLGLLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXT-----GGLS-TPVH-TLA 130
+NPAVT+ ++ I+ +S+ Y Q T GGL T VH L
Sbjct: 74 INPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLT 133
Query: 131 SGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGA 190
+G G++ E+I+TF L+FT++A+ D K+ + G L GF V L ++GA
Sbjct: 134 AG----HGLLVELIITFQLVFTIFAS-CDDKRTDVTGSVALAIGFSVAIGHLFAINYTGA 188
Query: 191 SMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVRSHVPIPYEEA 245
SMNPARSFGPA++ G+W +HW+YWVGP+IG LAG +YE+ F + +EA
Sbjct: 189 SMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDVELKRRLKEA 243
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 127 bits (319), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 120/235 (51%), Gaps = 13/235 (5%)
Query: 19 KALVVEFITTFLFVFVGVGSAMAADKLVGNXXXXXXXXXXXXXXXXXXMISA-GHISGGH 77
KA+ EF+ +FV + VGS + M+ GHISGGH
Sbjct: 53 KAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGH 112
Query: 78 LNPAVTLGLLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXT-----GGLS-TPVH-TLA 130
+NPAVT+ ++ I+ +S+ Y Q T GGL T VH L
Sbjct: 113 INPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLT 172
Query: 131 SGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGA 190
+G G++ E+I+TF L+FT++A+ D K+ + G L GF V L ++GA
Sbjct: 173 AG----HGLLVELIITFQLVFTIFAS-CDDKRTDVTGSVALAIGFSVAIGHLFAINYTGA 227
Query: 191 SMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVRSHVPIPYEEA 245
SMNPARSFGPA++ G+W +HW+YWVGP+IG LAG +YE+ F + +EA
Sbjct: 228 SMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDVELKRRLKEA 282
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 116/222 (52%), Gaps = 13/222 (5%)
Query: 19 KALVVEFITTFLFVFVGVGSAMAADKLVGNXXXXXXXXXXXXXXXXXXMISA-GHISGGH 77
KA+ EF+ +FV + +GS + M+ GHISGGH
Sbjct: 5 KAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGH 64
Query: 78 LNPAVTLGLLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXT-----GGLS-TPVH-TLA 130
+NPAVT+ ++ I+ +S+ Y Q T GGL T VH L
Sbjct: 65 INPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVHGNLT 124
Query: 131 SGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGA 190
+G G++ E+I+TF L+FT++A+ D K+ + G L GF V L ++GA
Sbjct: 125 AG----HGLLVELIITFQLVFTIFAS-CDSKRTDVTGSIALAIGFSVAIGHLFAINYTGA 179
Query: 191 SMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFF 232
SMNPARSFGPA++ G+W +HW+YWVGP+IG LAG +YE+ F
Sbjct: 180 SMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVF 221
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 109/222 (49%), Gaps = 11/222 (4%)
Query: 19 KALVVEFITTFLFVFVGVGSAMAADKLVGNXXXXXXXXXXXXXXXXXXMISAGHISGGHL 78
+A+ EF + +VF G+G+++ + + + GHISG H+
Sbjct: 11 RAICAEFFASLFYVFFGLGASL---RWAPGPLHVLQVALAFGLALATLVQAVGHISGAHV 67
Query: 79 NPAVTLGLLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXT-----GGLSTPVHTLASGV 133
NPAVT L G ++ R+I Y + Q T G L+ ++TL GV
Sbjct: 68 NPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLA--LNTLHPGV 125
Query: 134 GYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMN 193
Q I EI LT + ++AT + + G + + L GF + L G ++GA MN
Sbjct: 126 SVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMN 184
Query: 194 PARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVR 235
PARSF PA+++ ++T+HWVYWVGP+IG GL +Y+ R
Sbjct: 185 PARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPR 226
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 109/222 (49%), Gaps = 11/222 (4%)
Query: 19 KALVVEFITTFLFVFVGVGSAMAADKLVGNXXXXXXXXXXXXXXXXXXMISAGHISGGHL 78
+A+ EF T +VF G+G+++ + + + GHISG H+
Sbjct: 11 RAIFAEFFATLFYVFFGLGASL---RWAPGPLHVLQVALAFGLALATLVQAVGHISGAHV 67
Query: 79 NPAVTLGLLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXT-----GGLSTPVHTLASGV 133
NPAVT L G ++ R+I Y + Q T G L+ ++TL GV
Sbjct: 68 NPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLA--LNTLHPGV 125
Query: 134 GYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMN 193
Q I EI LT + ++AT + + G + + L GF + L G ++GA MN
Sbjct: 126 SVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMN 184
Query: 194 PARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVR 235
PARSF PA+++ ++T+HWVYWVGP+IG GL +Y+ R
Sbjct: 185 PARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPR 226
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 109/222 (49%), Gaps = 11/222 (4%)
Query: 19 KALVVEFITTFLFVFVGVGSAMAADKLVGNXXXXXXXXXXXXXXXXXXMISAGHISGGHL 78
+A+ EF T +VF G+G+++ + + + GHISG H+
Sbjct: 7 RAIFAEFFATLFYVFFGLGASL---RWAPGPLHVLQVALAFGLALATLVQAVGHISGAHV 63
Query: 79 NPAVTLGLLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXT-----GGLSTPVHTLASGV 133
NPAVT L G ++ R+I Y + Q T G L+ ++TL GV
Sbjct: 64 NPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLA--LNTLHPGV 121
Query: 134 GYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMN 193
Q I EI LT + ++AT + + G + + L GF + L G ++GA MN
Sbjct: 122 SVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMN 180
Query: 194 PARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVR 235
PARSF PA+++ ++T+HWVYWVGP+IG GL +Y+ R
Sbjct: 181 PARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPR 222
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 109/222 (49%), Gaps = 11/222 (4%)
Query: 19 KALVVEFITTFLFVFVGVGSAMAADKLVGNXXXXXXXXXXXXXXXXXXMISAGHISGGHL 78
+A+ EF T +VF G+G+++ + + + GHISG H+
Sbjct: 5 RAIFAEFFATLFYVFFGLGASL---RWAPGPLHVLQVALAFGLALATLVQAVGHISGAHV 61
Query: 79 NPAVTLGLLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXT-----GGLSTPVHTLASGV 133
NPAVT L G ++ R+I Y + Q T G L+ ++TL GV
Sbjct: 62 NPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLA--LNTLHPGV 119
Query: 134 GYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGASMN 193
Q I EI LT + ++AT + + G + + L GF + L G ++GA MN
Sbjct: 120 SVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMN 178
Query: 194 PARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVR 235
PARSF PA+++ ++T+HWVYWVGP+IG GL +Y+ R
Sbjct: 179 PARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPR 220
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 107/227 (47%), Gaps = 12/227 (5%)
Query: 8 SHREATQPDCIKALVVEFITTFLFVFVGVGSAMAADKLVGNXXXXXXXXXXXXXXXXXXM 67
S +E +KA+ EF+ T +FVF G+GSA+ + +
Sbjct: 2 SKKEVCSVAFLKAVFAEFLATLIFVFFGLGSALKWPSALPTILQIALAFGLAIGTLAQAL 61
Query: 68 ISAGHISGGHLNPAVTLGLLFGGHITFFRSILYWIDQXXXXXXXX-----XXXXXXTGGL 122
G +SGGH+NPA+TL LL G I+ R+ Y Q G L
Sbjct: 62 ---GPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPLNARGNL 118
Query: 123 STPVHTLASGVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANIL 182
+ + G Q ++ E+ILTF L ++A+ D ++ S G L G V L
Sbjct: 119 AVNALNNNTTQG--QAMVVELILTFQLALCIFAS-TDSRRTSPVGSPALSIGLSVTLGHL 175
Query: 183 AGGPFSGASMNPARSFGPALVSGDWTD-HWVYWVGPLIGGGLAGFIY 228
G F+G SMNPARSFGPA+V ++ HWV+WVGP++G LA +Y
Sbjct: 176 VGIYFTGCSMNPARSFGPAVVMNRFSPAHWVFWVGPIVGAVLAAILY 222
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 109/229 (47%), Gaps = 22/229 (9%)
Query: 19 KALVVEFITTFLFVFVGVGSAMAADK---LVGNXXXXXXXXXXXXXXXXXXMISAGHISG 75
+A + EFI T LF+++ V + + K + G+ +AG ISG
Sbjct: 39 RAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAG-ISG 97
Query: 76 GHLNPAVTLGLLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXTGGLSTPVHTLASG--- 132
GH+NPAVT GL ++ R+++Y I Q G P + G
Sbjct: 98 GHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKG---PYNQFGGGANS 154
Query: 133 --VGYFQGIIW--EIILTFSLLFTVYATIVDPKKGSIDG----LGPLLTGFVVGANILAG 184
+GY +G EII TF L++TV++ DPK+ + D L PL GF V LA
Sbjct: 155 VALGYNKGTALGAEIIGTFVLVYTVFSA-TDPKRSARDSHVPILAPLPIGFAVFMVHLAT 213
Query: 185 GPFSGASMNPARSFGPALVSGD---WTDHWVYWVGPLIGGGLAGFIYEH 230
P +G +NPARSFG A++ W D W++WVGP IG +A +++
Sbjct: 214 IPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQY 262
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 109/229 (47%), Gaps = 22/229 (9%)
Query: 19 KALVVEFITTFLFVFVGVGSAMAADK---LVGNXXXXXXXXXXXXXXXXXXMISAGHISG 75
+A + EFI T LF+++ V + + K + G+ +AG ISG
Sbjct: 62 RAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAG-ISG 120
Query: 76 GHLNPAVTLGLLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXTGGLSTPVHTLASG--- 132
GH+NPAVT GL ++ R+++Y I Q G P + G
Sbjct: 121 GHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKG---PYNQFGGGANS 177
Query: 133 --VGYFQGIIW--EIILTFSLLFTVYATIVDPKKGSIDG----LGPLLTGFVVGANILAG 184
+GY +G EII TF L++TV++ DPK+ + D L PL GF V LA
Sbjct: 178 VALGYNKGTALGAEIIGTFVLVYTVFSA-TDPKRSARDSHVPILAPLPIGFAVFMVHLAT 236
Query: 185 GPFSGASMNPARSFGPALVSGD---WTDHWVYWVGPLIGGGLAGFIYEH 230
P +G +NPARSFG A++ W D W++WVGP IG +A +++
Sbjct: 237 IPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQY 285
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 109/229 (47%), Gaps = 22/229 (9%)
Query: 19 KALVVEFITTFLFVFVGVGSAMAADK---LVGNXXXXXXXXXXXXXXXXXXMISAGHISG 75
+A + EFI T LF+++ V + + K + G+ +AG ISG
Sbjct: 39 RAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAG-ISG 97
Query: 76 GHLNPAVTLGLLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXTGGLSTPVHTLASG--- 132
GH+NPAVT GL ++ R+++Y I Q G P + G
Sbjct: 98 GHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKG---PYNQFGGGANS 154
Query: 133 --VGYFQGIIW--EIILTFSLLFTVYATIVDPKKGSIDG----LGPLLTGFVVGANILAG 184
+GY +G EII TF L++TV++ DPK+ + D L PL GF V LA
Sbjct: 155 VALGYNKGTALGAEIIGTFVLVYTVFSA-TDPKRSARDSHVPILAPLPIGFAVFMVHLAT 213
Query: 185 GPFSGASMNPARSFGPALVSGD---WTDHWVYWVGPLIGGGLAGFIYEH 230
P +G +NPARSFG A++ W D W++WVGP IG +A +++
Sbjct: 214 IPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQY 262
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 109/229 (47%), Gaps = 22/229 (9%)
Query: 19 KALVVEFITTFLFVFVGVGSAMAADK---LVGNXXXXXXXXXXXXXXXXXXMISAGHISG 75
+A + EFI T LF+++ V + + K + G+ +AG ISG
Sbjct: 62 RAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAG-ISG 120
Query: 76 GHLNPAVTLGLLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXTGGLSTPVHTLASG--- 132
GH+NPAVT GL + R+++Y I Q G P + G
Sbjct: 121 GHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKG---PYNQFGGGANS 177
Query: 133 --VGYFQGIIW--EIILTFSLLFTVYATIVDPKKGSIDG----LGPLLTGFVVGANILAG 184
+GY +G EII TF L++TV++ DPK+ + D L PL GF V LA
Sbjct: 178 VALGYNKGTALGAEIIGTFVLVYTVFSA-TDPKRSARDSHVPILAPLPIGFAVFMVHLAT 236
Query: 185 GPFSGASMNPARSFGPALV---SGDWTDHWVYWVGPLIGGGLAGFIYEH 230
P +G +NPARSFG A++ + W D W++WVGP IG +A +++
Sbjct: 237 IPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQY 285
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 108/229 (47%), Gaps = 22/229 (9%)
Query: 19 KALVVEFITTFLFVFVGVGSAMAADK---LVGNXXXXXXXXXXXXXXXXXXMISAGHISG 75
+A + EFI T LF+++ V + + K + G+ +AG ISG
Sbjct: 58 RAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAG-ISG 116
Query: 76 GHLNPAVTLGLLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXTGGLSTPVHTLASG--- 132
GH+NPAVT GL + R+++Y I Q G P + G
Sbjct: 117 GHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKG---PYNQFGGGANS 173
Query: 133 --VGYFQGIIW--EIILTFSLLFTVYATIVDPKKGSIDG----LGPLLTGFVVGANILAG 184
+GY +G EII TF L++TV++ DPK+ + D L PL GF V LA
Sbjct: 174 VALGYNKGTALGAEIIGTFVLVYTVFSA-TDPKRSARDSHVPILAPLPIGFAVFMVHLAT 232
Query: 185 GPFSGASMNPARSFGPALVSGD---WTDHWVYWVGPLIGGGLAGFIYEH 230
P +G +NPARSFG A++ W D W++WVGP IG +A +++
Sbjct: 233 IPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQY 281
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 82/175 (46%), Gaps = 3/175 (1%)
Query: 72 HISGGHLNPAVTLGLLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXTGGLSTPVHTLAS 131
+SGG+LNPAVTL L+ I FR IL Q T G + L
Sbjct: 105 RVSGGNLNPAVTLALVLARAIPPFRGILMAFTQIVAGMAAAGAASAMTPGEIAFANALGG 164
Query: 132 GVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGGPFSGAS 191
G +G+ E T L TV V+ + + P + G + L ++GA
Sbjct: 165 GASRTRGLFLEAFGTAILCLTVLMLAVEKHRATW--FAPFVIGIALLIAHLICIYYTGAG 222
Query: 192 MNPARSFGPALVSGDWTD-HWVYWVGPLIGGGLAGFIYEHFFIVRSHVPIPYEEA 245
+NPARSFGPA+ + + + HW+YW+GP++G LA I++ + + P +++
Sbjct: 223 LNPARSFGPAVAARSFPNYHWIYWLGPILGAFLAYSIWQMWKWLNYQTTNPGQDS 277
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 98/240 (40%), Gaps = 29/240 (12%)
Query: 19 KALVVEFITTFLFVFVGVGSAMAADKLVGNXXXX----------------XXXXXXXXXX 62
K + EFI TF+ VF G GSA +
Sbjct: 6 KRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFA 65
Query: 63 XXXXMISAGHISGGHLNPAVTLGLLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXTGGL 122
+ + G+ISG H+NPAVT+GL + Y I Q G
Sbjct: 66 IAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIG 125
Query: 123 STPVHTLAS-----GVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVV 177
+ V L + G+ Y+Q ++ E++ TF L+ T+ VD + + G ++ G V
Sbjct: 126 AATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDER--APKGFAGIIIGLTV 183
Query: 178 GANILAGGPFSGASMNPARSFGPALV------SGDWTDHWVYWVGPLIGGGLAGFIYEHF 231
I G SG+S+NPAR+FGP L + W + +Y +GP++G LA Y++
Sbjct: 184 AGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQYL 243
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 80/175 (45%), Gaps = 16/175 (9%)
Query: 69 SAGHISGGHLNPAVTLGLLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXTGGLSTPVHT 128
S G ISG H+NPAVT+ L G + Y + Q G + V
Sbjct: 73 SLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLLFLACVGPAAATVGG 132
Query: 129 LAS-----GVGYFQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILA 183
L + G+GY Q I+ E I TF L+ + VD + + G L+ G VG I
Sbjct: 133 LGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDER--APPGFAGLVIGLTVGGIITT 190
Query: 184 GGPFSGASMNPARSFGPALVSGD-------WTDHWVYWVGPLIGGGLAGFIYEHF 231
G +G+S+NPAR+FGP L GD W +Y +GP++G A ++Y +
Sbjct: 191 IGNITGSSLNPARTFGPYL--GDSLMGINLWQYFPIYVIGPIVGAVAAAWLYNYL 243
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 89/226 (39%), Gaps = 17/226 (7%)
Query: 19 KALVVEFITTFLFVFVGVGSAMAADKLVGNXXXXXXXXXXXXXXXXXXMISAGHISGGHL 78
+ L+ EF TF VF G GSA+ A + G ISGGH
Sbjct: 31 RKLLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGISGGHF 90
Query: 79 NPAVTLGLLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXT--------GGLSTPVHTLA 130
NPAV++GL G + Y I Q GG ++ +
Sbjct: 91 NPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGEH 150
Query: 131 SGVGY--FQGIIWEIILTFSLLFTVYATIVDPKKGSI-DGLGPLLTGFVVGANILAGGPF 187
S GY ++ EIILT L I+ G + G P+ G + L P
Sbjct: 151 SPGGYSLVSALLIEIILTAFFLI----VILGSTHGRVPAGFAPIAIGLALTLIHLISIPV 206
Query: 188 SGASMNPARSFGPALVSGDWT--DHWVYWVGPLIGGGLAGFIYEHF 231
+ S+NPARS G AL G W W++W+ P++GG I++ F
Sbjct: 207 TNTSVNPARSTGQALFVGGWALQQLWLFWLAPIVGGAAGAVIWKLF 252
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 76/211 (36%), Gaps = 19/211 (9%)
Query: 19 KALVVEFITTFLFVFVGVGSAMAADKLVGNXXXXXXXXXXXXXXXXXXMISAGHISGGHL 78
+ L E TF VF G GSA+ A + GHISGGH
Sbjct: 6 RKLAAECFGTFWLVFGGCGSAVLAAGFPALGIGFAGVALAWGLTVLTMAFAVGHISGGHF 65
Query: 79 NPAVTLGLLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXTGGLSTPVHTLASGV---GY 135
NPAVT+GL GG + Y I Q G T ASG GY
Sbjct: 66 NPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASG-KTGFDAAASGFASNGY 124
Query: 136 ----------FQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGG 185
++ E++L+ L ++ K + G P+ G + L
Sbjct: 125 GEHSPGGYSMLSALVVELVLSAGFLLVIHGAT---DKFAPAGFAPIAIGLALTLIHLISI 181
Query: 186 PFSGASMNPARSFGPALVSGDWT--DHWVYW 214
P + S+NPARS A+ G W W +W
Sbjct: 182 PVTNTSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 76/211 (36%), Gaps = 19/211 (9%)
Query: 19 KALVVEFITTFLFVFVGVGSAMAADKLVGNXXXXXXXXXXXXXXXXXXMISAGHISGGHL 78
+ L E TF VF G GSA+ A + GHISGGH
Sbjct: 3 RKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHF 62
Query: 79 NPAVTLGLLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXTGGLSTPVHTLASGV---GY 135
NPAVT+GL GG + Y I Q G T ASG GY
Sbjct: 63 NPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASG-KTGFDAAASGFASNGY 121
Query: 136 ----------FQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGG 185
++ E++L+ L ++ K + G P+ G + L
Sbjct: 122 GEHSPGGYSMLSALVVELVLSAGFLLVIHGA---TDKFAPAGFAPIAIGLALTLIHLISI 178
Query: 186 PFSGASMNPARSFGPALVSGDWT--DHWVYW 214
P + S+NPARS A+ G W W +W
Sbjct: 179 PVTNTSVNPARSTAVAIFQGGWALEQLWFFW 209
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 76/211 (36%), Gaps = 19/211 (9%)
Query: 19 KALVVEFITTFLFVFVGVGSAMAADKLVGNXXXXXXXXXXXXXXXXXXMISAGHISGGHL 78
+ L E TF VF G GSA+ A + GHISGGH
Sbjct: 6 RKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHF 65
Query: 79 NPAVTLGLLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXTGGLSTPVHTLASGV---GY 135
NPAVT+GL GG + Y I Q G T ASG GY
Sbjct: 66 NPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASG-KTGFDAAASGFASNGY 124
Query: 136 ----------FQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGG 185
++ E++L+ L ++ K + G P+ G + L
Sbjct: 125 GEHSPGGYSMLSALVVELVLSAGFLLVIHGAT---DKFAPAGFAPIAIGLALTLIHLISI 181
Query: 186 PFSGASMNPARSFGPALVSGDWT--DHWVYW 214
P + S+NPARS A+ G W W +W
Sbjct: 182 PVTNCSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 76/211 (36%), Gaps = 19/211 (9%)
Query: 19 KALVVEFITTFLFVFVGVGSAMAADKLVGNXXXXXXXXXXXXXXXXXXMISAGHISGGHL 78
+ L E TF VF G GSA+ A + GHISGGH
Sbjct: 6 RKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHF 65
Query: 79 NPAVTLGLLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXTGGLSTPVHTLASGV---GY 135
NPAVT+GL GG + Y I Q G T ASG GY
Sbjct: 66 NPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASG-KTGFDAAASGFASNGY 124
Query: 136 ----------FQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGG 185
++ E++L+ L ++ K + G P+ G + L
Sbjct: 125 GEHSPGGYSMLSALVVELVLSAGFLLVIHGAT---DKFAPAGFAPIAIGLALTLIHLISI 181
Query: 186 PFSGASMNPARSFGPALVSGDWT--DHWVYW 214
P + S+NPARS A+ G W W +W
Sbjct: 182 PVTNCSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 76/211 (36%), Gaps = 19/211 (9%)
Query: 19 KALVVEFITTFLFVFVGVGSAMAADKLVGNXXXXXXXXXXXXXXXXXXMISAGHISGGHL 78
+ L E TF VF G GSA+ A + GHISGGH
Sbjct: 6 RKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHF 65
Query: 79 NPAVTLGLLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXTGGLSTPVHTLASGV---GY 135
NPAVT+GL GG + Y I Q G T ASG GY
Sbjct: 66 NPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASG-KTGFDAAASGFASNGY 124
Query: 136 ----------FQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGG 185
++ E++L+ L ++ K + G P+ G + L
Sbjct: 125 GEHSPGGYSMLSALVVELVLSAGFLLVIHGAT---DKFAPAGFAPIAIGLALTLIGLISI 181
Query: 186 PFSGASMNPARSFGPALVSGDWT--DHWVYW 214
P + S+NPARS A+ G W W +W
Sbjct: 182 PVTNFSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 75/211 (35%), Gaps = 19/211 (9%)
Query: 19 KALVVEFITTFLFVFVGVGSAMAADKLVGNXXXXXXXXXXXXXXXXXXMISAGHISGGHL 78
+ L E TF VF G GSA+ A + GHISGGH
Sbjct: 6 RKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHF 65
Query: 79 NPAVTLGLLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXTGGLSTPVHTLASGV---GY 135
NPAVT+GL GG + Y I Q G T ASG GY
Sbjct: 66 NPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASG-KTGFDAAASGFASNGY 124
Query: 136 ----------FQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGG 185
++ E++L+ L ++ K + G P+ G L
Sbjct: 125 GEHSPGGYSMLSALVVELVLSAGFLLVIHGAT---DKFAPAGFAPIAIGLACTLIHLISI 181
Query: 186 PFSGASMNPARSFGPALVSGDWT--DHWVYW 214
P + S+NPARS A+ G W W +W
Sbjct: 182 PVTNTSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 76/211 (36%), Gaps = 19/211 (9%)
Query: 19 KALVVEFITTFLFVFVGVGSAMAADKLVGNXXXXXXXXXXXXXXXXXXMISAGHISGGHL 78
+ L E TF VF G GSA+ A + GHISGGH
Sbjct: 6 RKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAWGLTVLTMAFAVGHISGGHF 65
Query: 79 NPAVTLGLLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXTGGLSTPVHTLASGV---GY 135
NPAVT+GL GG + Y I Q G T ASG GY
Sbjct: 66 NPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASG-KTGFDAAASGFASNGY 124
Query: 136 ----------FQGIIWEIILTFSLLFTVYATIVDPKKGSIDGLGPLLTGFVVGANILAGG 185
++ E++L+ L ++ K + G P+ G + L
Sbjct: 125 GEHSPGGYSMLSALVVELVLSAGFLLVIHGAT---DKFAPAGFAPIAIGLALTLIGLISI 181
Query: 186 PFSGASMNPARSFGPALVSGDWT--DHWVYW 214
P + S+NPARS A+ G W W +W
Sbjct: 182 PVTNFSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 97/269 (36%), Gaps = 47/269 (17%)
Query: 8 SHREATQPDCIKALVVEFITTFLFVFVGVGSAMAADKLVGNXXXXXXXXXXXXXXXXXXM 67
S + CI EF+ T L +F GVG +AA K+ G +
Sbjct: 2 SQTSTLKGQCIA----EFLGTGLLIFFGVG-CVAALKVAGASFGQWEISVIFGLGVAMAI 56
Query: 68 ISAGHISGGHLNPAVTLGLLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXTGGLS---T 124
+SG HLNPAVT+ L + I + + Q L
Sbjct: 57 YLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFE 116
Query: 125 PVHTLASG------------------VGYFQGIIWEIILTFSLLFTVYATIVDPKKGSID 166
H + G + + Q E+++T ++L + + D G
Sbjct: 117 QTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVIT-AILMGLILALTDDGNGVPR 175
Query: 167 G-LGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHW-------------- 211
G L PLL G ++ + GP +G +MNPAR FGP + + W W
Sbjct: 176 GPLAPLLIGLLIAVIGASMGPLTGTAMNPARDFGPKVFA--WLAGWGNVAFTGGRDIPYF 233
Query: 212 -VYWVGPLIGGGLAGFIYEHFFIVRSHVP 239
V GP++G + F Y ++ H+P
Sbjct: 234 LVPLFGPIVGAIVGAFAYRK--LIGRHLP 260
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 97/269 (36%), Gaps = 47/269 (17%)
Query: 8 SHREATQPDCIKALVVEFITTFLFVFVGVGSAMAADKLVGNXXXXXXXXXXXXXXXXXXM 67
S + CI EF+ T L +F GVG +AA K+ G +
Sbjct: 2 SQTSTLKGQCIA----EFLGTGLLIFFGVGC-VAALKVAGASFGQWEISVIWGLGVAMAI 56
Query: 68 ISAGHISGGHLNPAVTLGLLFGGHITFFRSILYWIDQXXXXXXXXXXXXXXTGGLS---T 124
+SG HLNPAVT+ L + I + + Q L
Sbjct: 57 YLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFE 116
Query: 125 PVHTLASG------------------VGYFQGIIWEIILTFSLLFTVYATIVDPKKGSID 166
H + G + + Q E+++T ++L + + D G
Sbjct: 117 QTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVIT-AILMGLILALTDDGNGVPR 175
Query: 167 G-LGPLLTGFVVGANILAGGPFSGASMNPARSFGPALVSGDWTDHW-------------- 211
G L PLL G ++ + GP +G +MNPAR FGP + + W W
Sbjct: 176 GPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFA--WLAGWGNVAFTGGRDIPYF 233
Query: 212 -VYWVGPLIGGGLAGFIYEHFFIVRSHVP 239
V GP++G + F Y ++ H+P
Sbjct: 234 LVPLFGPIVGAIVGAFAYRK--LIGRHLP 260
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.144 0.461
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,902,012
Number of Sequences: 62578
Number of extensions: 260833
Number of successful extensions: 771
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 655
Number of HSP's gapped (non-prelim): 41
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)