BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025865
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 114/207 (55%), Gaps = 11/207 (5%)
Query: 17 FKAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHXXXXXXXXXXXXNI 76
+KA AEF++ L+FV VGS I + +D +V I++C +I
Sbjct: 52 WKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVD---MVLISLCFGLSIATMVQCFGHI 108
Query: 77 SGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHN 131
SGGH+NPAVT + +I+I +FY AQ LG+I+ + +L +VT GGL V T +
Sbjct: 109 SGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVH 168
Query: 132 XXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFS 191
TF LV+T++A+ D + G++A +AIGF V L A ++
Sbjct: 169 GNLTAGHGLLVELII--TFQLVFTIFASCDDKRTDVTGSVA-LAIGFSVAIGHLFAINYT 225
Query: 192 GGSMNPARSFGPAVASGNFQDNWIYWV 218
G SMNPARSFGPAV GN++++WIYWV
Sbjct: 226 GASMNPARSFGPAVIMGNWENHWIYWV 252
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 121 bits (303), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 116/207 (56%), Gaps = 11/207 (5%)
Query: 17 FKAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHXXXXXXXXXXXXNI 76
+KA AEF++ L+FV VGS I + ++ L P +V I++C +I
Sbjct: 13 WKAVTAEFLAMLIFVLLSVGSTINWGG--SENPL-PVDMVLISLCFGLSIATMVQCFGHI 69
Query: 77 SGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHN 131
SGGH+NPAVT + +I+I +FY AQ LG+I+ + +L +VT GGL V T +
Sbjct: 70 SGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVH 129
Query: 132 XXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFS 191
TF LV+T++A+ D + G++A +AIGF V L A ++
Sbjct: 130 GNLTAGHGLLVELII--TFQLVFTIFASCDDKRTDVTGSVA-LAIGFSVAIGHLFAINYT 186
Query: 192 GGSMNPARSFGPAVASGNFQDNWIYWV 218
G SMNPARSFGPAV GN++++WIYWV
Sbjct: 187 GASMNPARSFGPAVIMGNWENHWIYWV 213
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 113/207 (54%), Gaps = 11/207 (5%)
Query: 17 FKAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHXXXXXXXXXXXXNI 76
+KA AEF++ L+FV VGS I + +D +V I++C +I
Sbjct: 13 WKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVD---MVLISLCFGLSIATMVQCFGHI 69
Query: 77 SGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHN 131
SGGH+NPAVT + +I+I +FY AQ LG+I+ + +L +VT GGL V T +
Sbjct: 70 SGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVH 129
Query: 132 XXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFS 191
TF LV+T++A+ + G++A +AIGF V L A ++
Sbjct: 130 GNLTAGHGLLVELII--TFQLVFTIFASCDSKRTDVTGSVA-LAIGFSVAIGHLFAINYT 186
Query: 192 GGSMNPARSFGPAVASGNFQDNWIYWV 218
G SMNPARSFGPAV GN++++WIYWV
Sbjct: 187 GASMNPARSFGPAVIMGNWENHWIYWV 213
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/207 (37%), Positives = 112/207 (54%), Gaps = 11/207 (5%)
Query: 17 FKAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHXXXXXXXXXXXXNI 76
+KA AEF++ L+FV +GS I + +D +V I++C +I
Sbjct: 4 WKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVD---MVLISLCFGLSIATMVQCFGHI 60
Query: 77 SGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHN 131
SGGH+NPAVT + +I+I +FY AQ LG+I+ + +L +VT GGL V +
Sbjct: 61 SGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVH 120
Query: 132 XXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFS 191
TF LV+T++A+ + G+IA +AIGF V L A ++
Sbjct: 121 GNLTAGHGLLVELII--TFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINYT 177
Query: 192 GGSMNPARSFGPAVASGNFQDNWIYWV 218
G SMNPARSFGPAV GN++++WIYWV
Sbjct: 178 GASMNPARSFGPAVIMGNWENHWIYWV 204
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 114 bits (284), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 111/210 (52%), Gaps = 12/210 (5%)
Query: 17 FKAYLAEFISTLLFVFAGVGSAIAFN-----KVTADAALDPSGLVAIAICHXXXXXXXXX 71
++A +AEF++ +LF+F +GSA+ F+ T A D V +++
Sbjct: 11 WRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDN---VKVSLAFGLSIATLAQ 67
Query: 72 XXXNISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL---AVP 128
+ISG H+NPAVT GL L QI++L I Y IAQ +G+IVA+ +L +T L ++
Sbjct: 68 SVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLG 127
Query: 129 THNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAG 188
+ T LV V AT D ++ LG P+AIGF V L A
Sbjct: 128 LNALAPGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSGPLAIGFSVALGHLLAI 186
Query: 189 PFSGGSMNPARSFGPAVASGNFQDNWIYWV 218
++G +NPARSFG +V + NFQD+WI+WV
Sbjct: 187 DYTGCGINPARSFGSSVITHNFQDHWIFWV 216
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 114 bits (284), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 107/205 (52%), Gaps = 4/205 (1%)
Query: 17 FKAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHXXXXXXXXXXXXNI 76
++A +AEF++T LFVF +GSA+ F + V +++ +I
Sbjct: 11 WRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHI 70
Query: 77 SGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL---AVPTHNXX 133
SG H+NPAVT GL L QI+I + Y IAQ +G+IVA+ +L +T L ++ ++
Sbjct: 71 SGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGNSLGRNDLA 130
Query: 134 XXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGG 193
T LV V AT D ++ LG AP+AIG V L A ++G
Sbjct: 131 DGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSAPLAIGLSVALGHLLAIDYTGC 189
Query: 194 SMNPARSFGPAVASGNFQDNWIYWV 218
+NPARSFG AV + NF ++WI+WV
Sbjct: 190 GINPARSFGSAVITHNFSNHWIFWV 214
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 17 FKAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHXXXXXXXXXXXXNI 76
++A AEF +TL +VF G+G+++ + A P ++ +A+ +I
Sbjct: 10 WRAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHI 62
Query: 77 SGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHN 131
SG HVNPAVTF +G Q+++L I Y +AQLLG++ + +L VT G LA+ T +
Sbjct: 63 SGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLH 122
Query: 132 XXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFS 191
F V ++AT + + G LG++A +A+GF + L ++
Sbjct: 123 PGVSVGQATIVEIFLTLQF--VLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYT 179
Query: 192 GGSMNPARSFGPAVASGNFQDNWIYWV 218
G MNPARSF PA+ + NF ++W+YWV
Sbjct: 180 GAGMNPARSFAPAILTRNFTNHWVYWV 206
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 17 FKAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHXXXXXXXXXXXXNI 76
++A AEF +TL +VF G+G+++ + A P ++ +A+ +I
Sbjct: 6 WRAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHI 58
Query: 77 SGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHN 131
SG HVNPAVTF +G Q+++L I Y +AQLLG++ + +L VT G LA+ T +
Sbjct: 59 SGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLH 118
Query: 132 XXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFS 191
F V ++AT + + G LG++A +A+GF + L ++
Sbjct: 119 PGVSVGQATIVEIFLTLQF--VLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYT 175
Query: 192 GGSMNPARSFGPAVASGNFQDNWIYWV 218
G MNPARSF PA+ + NF ++W+YWV
Sbjct: 176 GAGMNPARSFAPAILTRNFTNHWVYWV 202
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 17 FKAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHXXXXXXXXXXXXNI 76
++A AEF +TL +VF G+G+++ + A P ++ +A+ +I
Sbjct: 4 WRAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHI 56
Query: 77 SGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHN 131
SG HVNPAVTF +G Q+++L I Y +AQLLG++ + +L VT G LA+ T +
Sbjct: 57 SGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLH 116
Query: 132 XXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFS 191
F V ++AT + + G LG++A +A+GF + L ++
Sbjct: 117 PGVSVGQATIVEIFLTLQF--VLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYT 173
Query: 192 GGSMNPARSFGPAVASGNFQDNWIYWV 218
G MNPARSF PA+ + NF ++W+YWV
Sbjct: 174 GAGMNPARSFAPAILTRNFTNHWVYWV 200
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 17 FKAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHXXXXXXXXXXXXNI 76
++A AEF ++L +VF G+G+++ + A P ++ +A+ +I
Sbjct: 10 WRAICAEFFASLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHI 62
Query: 77 SGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHN 131
SG HVNPAVTF +G Q+++L I Y +AQLLG++ + +L VT G LA+ T +
Sbjct: 63 SGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLH 122
Query: 132 XXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFS 191
F V ++AT + + G LG++A +A+GF + L ++
Sbjct: 123 PGVSVGQATIVEIFLTLQF--VLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYT 179
Query: 192 GGSMNPARSFGPAVASGNFQDNWIYWV 218
G MNPARSF PA+ + NF ++W+YWV
Sbjct: 180 GAGMNPARSFAPAILTRNFTNHWVYWV 206
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 103 bits (258), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 111/224 (49%), Gaps = 20/224 (8%)
Query: 12 FSLGSFK------AYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHXXX 65
F LG K A +AEFI+TLLF++ V + I +K T GL+ IA
Sbjct: 27 FDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETV--VCGSVGLLGIAWAFGGM 84
Query: 66 XXXXXXXXXNISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGG- 124
ISGGH+NPAVTFGL L ++++L + Y IAQ LG+I L+K G
Sbjct: 85 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGP 144
Query: 125 ---LAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGT----IAPIAIG 177
++ TF LVYTV+ +A DPK+ + + +AP+ IG
Sbjct: 145 YNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIG 203
Query: 178 FIVGANILAAGPFSGGSMNPARSFGPAV---ASGNFQDNWIYWV 218
F V LA P +G +NPARSFG AV ++ + D WI+WV
Sbjct: 204 FAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWV 247
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 103 bits (257), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 111/224 (49%), Gaps = 20/224 (8%)
Query: 12 FSLGSFK------AYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHXXX 65
F LG K A +AEFI+TLLF++ V + I +K T GL+ IA
Sbjct: 50 FDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETV--VCGSVGLLGIAWAFGGM 107
Query: 66 XXXXXXXXXNISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGG- 124
ISGGH+NPAVTFGL L ++++L + Y IAQ LG+I L+K G
Sbjct: 108 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGP 167
Query: 125 ---LAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGT----IAPIAIG 177
++ TF LVYTV+ +A DPK+ + + +AP+ IG
Sbjct: 168 YNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIG 226
Query: 178 FIVGANILAAGPFSGGSMNPARSFGPAV---ASGNFQDNWIYWV 218
F V LA P +G +NPARSFG AV ++ + D WI+WV
Sbjct: 227 FAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWV 270
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 111/224 (49%), Gaps = 20/224 (8%)
Query: 12 FSLGSFK------AYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHXXX 65
F LG K A +AEFI+TLLF++ V + I +K T GL+ IA
Sbjct: 27 FDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETV--VCGSVGLLGIAWAFGGM 84
Query: 66 XXXXXXXXXNISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGG- 124
ISGGH+NPAVTFGL L ++++L + Y IAQ LG+I L+K G
Sbjct: 85 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGP 144
Query: 125 ---LAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGT----IAPIAIG 177
++ TF LVYTV+ +A DPK+ + + +AP+ IG
Sbjct: 145 YNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIG 203
Query: 178 FIVGANILAAGPFSGGSMNPARSFGPAV---ASGNFQDNWIYWV 218
F V LA P +G +NPARSFG AV ++ + D WI+WV
Sbjct: 204 FAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWV 247
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 110/224 (49%), Gaps = 20/224 (8%)
Query: 12 FSLGSFK------AYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHXXX 65
F LG K A +AEFI+TLLF++ V + I +K T GL+ IA
Sbjct: 50 FDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETV--VCGSVGLLGIAWAFGGM 107
Query: 66 XXXXXXXXXNISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGG- 124
ISGGH+NPAVTFGL L ++ +L + Y IAQ LG+I L+K G
Sbjct: 108 IFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGP 167
Query: 125 ---LAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGT----IAPIAIG 177
++ TF LVYTV+ +A DPK+ + + +AP+ IG
Sbjct: 168 YNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIG 226
Query: 178 FIVGANILAAGPFSGGSMNPARSFGPAV---ASGNFQDNWIYWV 218
F V LA P +G +NPARSFG AV ++ + D WI+WV
Sbjct: 227 FAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWV 270
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 110/224 (49%), Gaps = 20/224 (8%)
Query: 12 FSLGSFK------AYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHXXX 65
F LG K A +AEFI+TLLF++ V + I +K T GL+ IA
Sbjct: 46 FDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETV--VCGSVGLLGIAWAFGGM 103
Query: 66 XXXXXXXXXNISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGG- 124
ISGGH+NPAVTFGL L ++ +L + Y IAQ LG+I L+K G
Sbjct: 104 IFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGP 163
Query: 125 ---LAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGT----IAPIAIG 177
++ TF LVYTV+ +A DPK+ + + +AP+ IG
Sbjct: 164 YNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIG 222
Query: 178 FIVGANILAAGPFSGGSMNPARSFGPAV---ASGNFQDNWIYWV 218
F V LA P +G +NPARSFG AV ++ + D WI+WV
Sbjct: 223 FAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWV 266
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 90.5 bits (223), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 105/217 (48%), Gaps = 18/217 (8%)
Query: 9 DDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGL---VAIAICHXXX 65
+ S+ KA AEF++TL+FVF G+GSA+ + PS L + IA+
Sbjct: 4 KEVCSVAFLKAVFAEFLATLIFVFFGLGSALKW----------PSALPTILQIALAFGLA 53
Query: 66 XXXXXXXXXNISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL 125
+SGGH+NPA+T L +G QI++L FY AQL+G+I + +L V
Sbjct: 54 IGTLAQALGPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPLN 113
Query: 126 A---VPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGA 182
A + + TF L ++A+ + +G+ A ++IG V
Sbjct: 114 ARGNLAVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTSPVGSPA-LSIGLSVTL 172
Query: 183 NILAAGPFSGGSMNPARSFGPAVASGNFQD-NWIYWV 218
L F+G SMNPARSFGPAV F +W++WV
Sbjct: 173 GHLVGIYFTGCSMNPARSFGPAVVMNRFSPAHWVFWV 209
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 88/205 (42%), Gaps = 5/205 (2%)
Query: 17 FKAYLAEFISTLLFVFAGVGSAIAFNKV--TADAALDPSGLVAIAICHXXXXXXXXXXXX 74
F A EF+ T LF+++ A N+ T D +P+ L+ I+
Sbjct: 45 FIAMSGEFVGTFLFLWSAFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITY 104
Query: 75 NISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXX 134
+SGG++NPAVT L L I GI Q++ + A+ +T G +
Sbjct: 105 RVSGGNLNPAVTLALVLARAIPPFRGILMAFTQIVAGMAAAGAASAMTPGEIAFANALGG 164
Query: 135 XXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGS 194
T L TV A + + + AP IG + L ++G
Sbjct: 165 GASRTRGLFLEAFGTAILCLTVLMLAVEKHRATW--FAPFVIGIALLIAHLICIYYTGAG 222
Query: 195 MNPARSFGPAVASGNFQD-NWIYWV 218
+NPARSFGPAVA+ +F + +WIYW+
Sbjct: 223 LNPARSFGPAVAARSFPNYHWIYWL 247
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 87/222 (39%), Gaps = 27/222 (12%)
Query: 18 KAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGL-------------VAIAICHXX 64
K +AEFI T + VF G GSA A + A P+ VAI +
Sbjct: 6 KRCIAEFIGTFILVFFGAGSA-AVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGF 64
Query: 65 XXXXXXXXXXNISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGG 124
NISG H+NPAVT GL + + Y IAQLLG+ SF+ G
Sbjct: 65 AIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGI 124
Query: 125 LAVPTHNXXXXX-----XXXXXXXXXXXXTFGLVYTVYATAADPK--KGSLGTIAPIAIG 177
A TF L+ T+ A D + KG G I IG
Sbjct: 125 GAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKGFAGII----IG 180
Query: 178 FIVGANILAAGPFSGGSMNPARSFGPAVASGNF--QDNWIYW 217
V I G SG S+NPAR+FGP + F D W Y+
Sbjct: 181 LTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYY 222
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 88/216 (40%), Gaps = 23/216 (10%)
Query: 17 FKAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPS---GLVAIAICHXXXXXXXXXXX 73
F+ AE T VF G GSA+ AA P+ G +A+
Sbjct: 5 FRKLAAECFGTFWLVFGGCGSAVL-------AAGFPALGIGFAGVALAWGLTVLTMAFAV 57
Query: 74 XNISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVV----TG------ 123
+ISGGH NPAVT GL GG+ + Y IAQ++G IVA+ LL ++ TG
Sbjct: 58 GHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAAS 117
Query: 124 GLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGAN 183
G A + + + A K G APIAIG +
Sbjct: 118 GFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG-FAPIAIGLALTLI 176
Query: 184 ILAAGPFSGGSMNPARSFGPAVASGNF--QDNWIYW 217
L + P + S+NPARS A+ G + + W +W
Sbjct: 177 HLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 87/216 (40%), Gaps = 23/216 (10%)
Query: 17 FKAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPS---GLVAIAICHXXXXXXXXXXX 73
F+ AE T VF G GSA+ AA P G +A+
Sbjct: 2 FRKLAAECFGTFWLVFGGCGSAVL-------AAGFPELGIGFAGVALAFGLTVLTMAFAV 54
Query: 74 XNISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVV----TG------ 123
+ISGGH NPAVT GL GG+ + Y IAQ++G IVA+ LL ++ TG
Sbjct: 55 GHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAAS 114
Query: 124 GLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGAN 183
G A + + + A K G APIAIG +
Sbjct: 115 GFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG-FAPIAIGLALTLI 173
Query: 184 ILAAGPFSGGSMNPARSFGPAVASGNF--QDNWIYW 217
L + P + S+NPARS A+ G + + W +W
Sbjct: 174 HLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFW 209
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 87/216 (40%), Gaps = 23/216 (10%)
Query: 17 FKAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPS---GLVAIAICHXXXXXXXXXXX 73
F+ AE T VF G GSA+ AA P G +A+
Sbjct: 5 FRKLAAESFGTFWLVFGGSGSAVL-------AAGFPELGIGFAGVALAFGLTVLTMAFAV 57
Query: 74 XNISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVV----TG------ 123
+ISGGH NPAVT GL GG+ + Y IAQ++G IVA+ LL ++ TG
Sbjct: 58 GHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAAS 117
Query: 124 GLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGAN 183
G A + + + A K G APIAIG +
Sbjct: 118 GFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG-FAPIAIGLALTLI 176
Query: 184 ILAAGPFSGGSMNPARSFGPAVASGNF--QDNWIYW 217
L + P + S+NPARS A+ G + + W +W
Sbjct: 177 HLISIPVTNCSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 87/216 (40%), Gaps = 23/216 (10%)
Query: 17 FKAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPS---GLVAIAICHXXXXXXXXXXX 73
F+ AE T VF G GSA+ AA P G +A+
Sbjct: 5 FRKLAAECFGTFWLVFGGCGSAVL-------AAGFPELGIGFAGVALAFGLTVLTMAFAV 57
Query: 74 XNISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVV----TG------ 123
+ISGGH NPAVT GL GG+ + Y IAQ++G IVA+ LL ++ TG
Sbjct: 58 GHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAAS 117
Query: 124 GLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGAN 183
G A + + + A K G APIAIG +
Sbjct: 118 GFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG-FAPIAIGLALTLI 176
Query: 184 ILAAGPFSGGSMNPARSFGPAVASGNF--QDNWIYW 217
L + P + S+NPARS A+ G + + W +W
Sbjct: 177 GLISIPVTNFSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 87/216 (40%), Gaps = 23/216 (10%)
Query: 17 FKAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPS---GLVAIAICHXXXXXXXXXXX 73
F+ AE T VF G GSA+ AA P G +A+
Sbjct: 5 FRKLAAECFGTFWLVFGGCGSAVL-------AAGFPELGIGFAGVALAWGLTVLTMAFAV 57
Query: 74 XNISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVV----TG------ 123
+ISGGH NPAVT GL GG+ + Y IAQ++G IVA+ LL ++ TG
Sbjct: 58 GHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAAS 117
Query: 124 GLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGAN 183
G A + + + A K G APIAIG +
Sbjct: 118 GFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG-FAPIAIGLALTLI 176
Query: 184 ILAAGPFSGGSMNPARSFGPAVASGNF--QDNWIYW 217
L + P + S+NPARS A+ G + + W +W
Sbjct: 177 GLISIPVTNFSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 87/216 (40%), Gaps = 23/216 (10%)
Query: 17 FKAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPS---GLVAIAICHXXXXXXXXXXX 73
F+ AE T VF G GSA+ AA P G +A+
Sbjct: 5 FRKLAAESFGTFWLVFGGSGSAVL-------AAGFPELGIGFAGVALAFGLTVLTMAFAV 57
Query: 74 XNISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVV----TG------ 123
+ISGGH NPAVT GL GG+ + Y IAQ++G IVA+ LL ++ TG
Sbjct: 58 GHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAAS 117
Query: 124 GLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGAN 183
G A + + + A K G APIAIG +
Sbjct: 118 GFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG-FAPIAIGLALTLI 176
Query: 184 ILAAGPFSGGSMNPARSFGPAVASGNF--QDNWIYW 217
L + P + S+NPARS A+ G + + W +W
Sbjct: 177 HLISIPVTNCSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 86/216 (39%), Gaps = 23/216 (10%)
Query: 17 FKAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPS---GLVAIAICHXXXXXXXXXXX 73
F+ AE T VF G GSA+ AA P G +A+
Sbjct: 5 FRKLAAESFGTFWLVFGGSGSAVL-------AAGFPELGIGFAGVALAFGLTVLTMAFAV 57
Query: 74 XNISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVV----TG------ 123
+ISGGH NPAVT GL GG+ + Y IAQ++G IVA+ LL ++ TG
Sbjct: 58 GHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAAS 117
Query: 124 GLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGAN 183
G A + + + A K G APIAIG
Sbjct: 118 GFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG-FAPIAIGLACTLI 176
Query: 184 ILAAGPFSGGSMNPARSFGPAVASGNF--QDNWIYW 217
L + P + S+NPARS A+ G + + W +W
Sbjct: 177 HLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 95/222 (42%), Gaps = 23/222 (10%)
Query: 10 DSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHXXXXXXX 69
S+ +G + LAEF T VF G GSA+ F + + G +A+
Sbjct: 25 QSYVMG--RKLLAEFFGTFWLVFGGCGSAV-FAAAFPELGI---GFTGVALAFGLTVLTM 78
Query: 70 XXXXXNISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLA--- 126
ISGGH NPAV+ GL + G+ + + Y IAQ+ G+IVA+ L V+ G A
Sbjct: 79 AYAVGGISGGHFNPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGID 138
Query: 127 --------VPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGF 178
H+ F L+ + +T G APIAIG
Sbjct: 139 LGGFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILGSTHGRVPAG----FAPIAIGL 194
Query: 179 IVGANILAAGPFSGGSMNPARSFGPAVASGNF--QDNWIYWV 218
+ L + P + S+NPARS G A+ G + Q W++W+
Sbjct: 195 ALTLIHLISIPVTNTSVNPARSTGQALFVGGWALQQLWLFWL 236
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 77/204 (37%), Gaps = 21/204 (10%)
Query: 18 KAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGL-------------VAIAICHXX 64
K + AE + T + VF G G+A+ + A+ A P+ AI +
Sbjct: 7 KRFTAEVVGTFILVFFGPGAAV-ITLMIANGADKPNEFNIGIGALGGLGDWFAIGMAFAL 65
Query: 65 XXXXXXXXXXNISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGG 124
ISG H+NPAVT L G+ + Y +AQ +G+ + S L G
Sbjct: 66 AIAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLLFLACVGP 125
Query: 125 LAVPTHNXXXXXX-----XXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFI 179
A TF L+ + A D + A + IG
Sbjct: 126 AAATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAPP--GFAGLVIGLT 183
Query: 180 VGANILAAGPFSGGSMNPARSFGP 203
VG I G +G S+NPAR+FGP
Sbjct: 184 VGGIITTIGNITGSSLNPARTFGP 207
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 76/206 (36%), Gaps = 26/206 (12%)
Query: 21 LAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHXXXXXXXXXXXXNISGGH 80
+AEF+ T L +F GVG A A G I++ +SG H
Sbjct: 12 IAEFLGTGLLIFFGVGCVAALKVAGAS-----FGQWEISVIFGLGVAMAIYLTAGVSGAH 66
Query: 81 VNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLL---------------KVVTGGL 125
+NPAVT L L I + ++Q+ G+ A+ L+ +V G +
Sbjct: 67 LNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSV 126
Query: 126 AVPTHNXXXXXXXXXXXXXXXXXTFGLVYT------VYATAADPKKGSLGTIAPIAIGFI 179
+V T + A D G +AP+ IG +
Sbjct: 127 ESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIGLL 186
Query: 180 VGANILAAGPFSGGSMNPARSFGPAV 205
+ + GP +G +MNPAR FGP V
Sbjct: 187 IAVIGASMGPLTGTAMNPARDFGPKV 212
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 76/206 (36%), Gaps = 26/206 (12%)
Query: 21 LAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHXXXXXXXXXXXXNISGGH 80
+AEF+ T L +F GVG A A G I++ +SG H
Sbjct: 12 IAEFLGTGLLIFFGVGCVAALKVAGAS-----FGQWEISVIWGLGVAMAIYLTAGVSGAH 66
Query: 81 VNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLL---------------KVVTGGL 125
+NPAVT L L I + ++Q+ G+ A+ L+ +V G +
Sbjct: 67 LNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSV 126
Query: 126 AVPTHNXXXXXXXXXXXXXXXXXTFGLVYT------VYATAADPKKGSLGTIAPIAIGFI 179
+V T + A D G +AP+ IG +
Sbjct: 127 ESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIGLL 186
Query: 180 VGANILAAGPFSGGSMNPARSFGPAV 205
+ + GP +G +MNPAR FGP V
Sbjct: 187 IAVIGASMGPLTGFAMNPARDFGPKV 212
>pdb|3M8B|A Chain A, Crystal Structure Of Spin-Labeled Btub V10r1 In The Apo
State
pdb|3M8D|A Chain A, Crystal Structure Of Spin-Labeled Btub V10r1 With Bound
Calcium And Cyanocobalamin
Length = 594
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 5 FGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKVTA 46
+GR+D S +L K Y ++ + ++ +G+ + + K T
Sbjct: 281 YGRYDSSATLDEMKQYTVQWANNVIVGHGSIGAGVDWQKQTT 322
>pdb|3RGM|A Chain A, Crystal Structure Of Spin-Labeled Btub T156r1
Length = 594
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 5 FGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKVTA 46
+GR+D S +L K Y ++ + ++ +G+ + + K T
Sbjct: 281 YGRYDSSATLDEMKQYTVQWANNVIVGHGSIGAGVDWQKQTT 322
>pdb|1NQE|A Chain A, Outer Membrane Cobalamin Transporter (btub) From E. Coli
pdb|1NQG|A Chain A, Outer Membrane Cobalamin Transporter (Btub) From E. Coli,
With Bound Calcium
pdb|1NQH|A Chain A, Outer Membrane Cobalamin Transporter (Btub) From E. Coli,
With Bound Calcium And Cyanocobalamin (Vitamin B12)
Substrate
pdb|1UJW|A Chain A, Structure Of The Complex Between Btub And Colicin E3
Receptor Binding Domain
pdb|2GUF|A Chain A, In Meso Crystal Structure Of The Cobalamin Transporter,
Btub
pdb|2YSU|A Chain A, Structure Of The Complex Between Btub And Colicin E2
Receptor Binding Domain
Length = 594
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 5 FGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKVTA 46
+GR+D S +L K Y ++ + ++ +G+ + + K T
Sbjct: 281 YGRYDSSATLDEMKQYTVQWANNVIVGHGSIGAGVDWQKQTT 322
>pdb|2GSK|A Chain A, Structure Of The Btub:tonb Complex
Length = 590
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 5 FGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKVTA 46
+GR+D S +L K Y ++ + ++ +G+ + + K T
Sbjct: 277 YGRYDSSATLDEMKQYTVQWANNVIVGHGSIGAGVDWQKQTT 318
>pdb|3RGN|A Chain A, Crystal Structure Of Spin-Labeled Btub W371r1
Length = 594
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 5 FGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKVTA 46
+GR+D S +L K Y ++ + ++ +G+ + + K T
Sbjct: 281 YGRYDSSATLDEMKQYTVQWANNVIVGHGSIGAGVDWQKQTT 322
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Query: 18 KAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHXXXXXXXXXXXXNIS 77
+ ++ EF+ T + +F G G+ F+ + + +S
Sbjct: 11 REFIGEFLGTFVLMFLGEGATANFHTTGLSG-----DWYKLCLGWGLAVFFGILVSAKLS 65
Query: 78 GGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVAS 115
G H+N AV+ GL+ + + Y+ AQLLG+ V +
Sbjct: 66 GAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGT 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,064,406
Number of Sequences: 62578
Number of extensions: 200773
Number of successful extensions: 536
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 399
Number of HSP's gapped (non-prelim): 56
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.9 bits)