Query 025865
Match_columns 247
No_of_seqs 212 out of 1413
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 10:23:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025865.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025865hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0223 Aquaporin (major intri 100.0 3.5E-53 7.5E-58 356.2 22.1 230 8-245 2-235 (238)
2 PLN00166 aquaporin TIP2; Provi 100.0 3.2E-51 6.9E-56 349.7 25.2 241 7-247 8-249 (250)
3 PLN00027 aquaporin TIP; Provis 100.0 1E-50 2.2E-55 347.6 24.4 244 4-247 7-252 (252)
4 PLN00184 aquaporin NIP1; Provi 100.0 2.3E-49 5E-54 344.4 24.5 224 12-242 49-279 (296)
5 PLN00167 aquaporin TIP5; Provi 100.0 2.1E-48 4.5E-53 333.2 25.9 234 8-242 13-246 (256)
6 PF00230 MIP: Major intrinsic 100.0 7.7E-49 1.7E-53 332.4 19.4 222 10-231 1-227 (227)
7 PLN00026 aquaporin NIP; Provi 100.0 2.1E-48 4.7E-53 337.7 22.5 225 13-245 67-291 (298)
8 PLN00182 putative aquaporin NI 100.0 1.7E-47 3.7E-52 330.9 24.3 215 15-236 40-254 (283)
9 KOG0224 Aquaporin (major intri 100.0 2.9E-49 6.3E-54 334.8 12.6 228 11-243 26-282 (316)
10 PTZ00016 aquaglyceroporin; Pro 100.0 5.4E-47 1.2E-51 330.4 24.4 220 14-239 47-293 (294)
11 PRK05420 aquaporin Z; Provisio 100.0 1.6E-46 3.5E-51 317.8 25.0 215 17-238 2-230 (231)
12 COG0580 GlpF Glycerol uptake f 100.0 4.3E-47 9.4E-52 318.3 20.8 218 15-236 3-240 (241)
13 PLN00183 putative aquaporin NI 100.0 1.6E-44 3.4E-49 311.3 23.4 223 12-242 40-262 (274)
14 cd00333 MIP Major intrinsic pr 100.0 2.4E-43 5.1E-48 298.9 20.9 213 18-234 1-228 (228)
15 TIGR00861 MIP MIP family chann 100.0 3.3E-42 7.2E-47 289.7 20.1 210 22-231 1-216 (216)
16 PLN00184 aquaporin NIP1; Provi 99.7 2.1E-16 4.5E-21 138.1 8.1 104 135-238 50-157 (296)
17 PLN00026 aquaporin NIP; Provi 99.7 1.8E-16 3.8E-21 138.3 7.5 106 133-238 65-174 (298)
18 PLN00182 putative aquaporin NI 99.6 1E-15 2.3E-20 132.8 10.5 99 14-123 156-254 (283)
19 PLN00183 putative aquaporin NI 99.6 1.4E-15 3.1E-20 131.6 10.0 112 15-137 159-270 (274)
20 cd00333 MIP Major intrinsic pr 99.6 1.8E-15 3.8E-20 128.4 9.7 100 13-120 126-227 (228)
21 PLN00167 aquaporin TIP5; Provi 99.6 9.2E-15 2E-19 125.6 9.1 103 135-237 18-129 (256)
22 PLN00166 aquaporin TIP2; Provi 99.6 8.3E-15 1.8E-19 125.5 7.5 102 136-237 15-125 (250)
23 TIGR00861 MIP MIP family chann 99.5 1.8E-14 4E-19 121.2 8.3 96 14-117 119-215 (216)
24 KOG0223 Aquaporin (major intri 99.5 1.1E-14 2.3E-19 123.1 5.3 109 5-125 120-228 (238)
25 PRK05420 aquaporin Z; Provisio 99.5 3E-14 6.6E-19 120.8 8.0 99 139-237 2-105 (231)
26 PTZ00016 aquaglyceroporin; Pro 99.5 2.1E-14 4.6E-19 125.6 6.9 102 137-238 48-153 (294)
27 PLN00027 aquaporin TIP; Provis 99.5 3.5E-14 7.6E-19 121.9 8.0 100 137-236 18-126 (252)
28 KOG0224 Aquaporin (major intri 99.4 4.2E-14 9E-19 121.0 3.7 104 137-240 30-138 (316)
29 COG0580 GlpF Glycerol uptake f 99.4 1.1E-13 2.3E-18 116.9 5.1 107 137-243 3-116 (241)
30 PF00230 MIP: Major intrinsic 99.3 3.8E-11 8.2E-16 101.7 10.0 100 10-118 128-227 (227)
31 PRK11562 nitrite transporter N 92.3 4.2 9.1E-05 35.4 12.5 177 56-243 59-257 (268)
32 PRK10805 formate transporter; 87.8 18 0.00039 31.7 16.2 100 56-159 69-182 (285)
33 COG2116 FocA Formate/nitrite f 81.4 35 0.00076 29.6 17.4 180 54-241 63-263 (265)
34 PRK09713 focB putative formate 74.2 60 0.0013 28.4 15.4 102 55-159 67-181 (282)
35 PF01226 Form_Nir_trans: Forma 73.6 58 0.0013 27.9 11.0 142 14-159 18-171 (250)
36 PF03033 Glyco_transf_28: Glyc 46.5 6.5 0.00014 29.6 -0.0 19 76-94 7-25 (139)
37 TIGR00790 fnt formate/nitrite 41.3 2.2E+02 0.0048 24.1 14.5 102 55-159 43-158 (239)
38 PRK12446 undecaprenyldiphospho 35.8 16 0.00035 32.8 0.8 20 74-93 8-27 (352)
39 COG3301 NrfD Formate-dependent 24.9 3.4E+02 0.0073 24.0 6.9 43 191-235 223-268 (305)
40 KOG3030 Lipid phosphate phosph 23.7 1.2E+02 0.0026 27.1 4.1 48 192-239 210-266 (317)
41 PRK11375 allantoin permease; P 22.1 6.1E+02 0.013 23.9 8.8 25 216-240 450-474 (484)
42 COG0786 GltS Na+/glutamate sym 21.5 2.6E+02 0.0056 25.9 5.8 35 88-123 21-55 (404)
43 PF09163 Form-deh_trans: Forma 20.6 1.4E+02 0.0031 18.4 2.8 24 221-244 20-43 (44)
44 PRK09979 putative rho operon l 20.4 35 0.00077 18.9 0.1 17 189-205 5-21 (33)
No 1
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.5e-53 Score=356.18 Aligned_cols=230 Identities=52% Similarity=0.888 Sum_probs=209.5
Q ss_pred cCCcCChhHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCcccchHHHH
Q 025865 8 FDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHGFALFVAVAVGANISGGHVNPAVTF 87 (247)
Q Consensus 8 ~~~~~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSG~h~NPavTl 87 (247)
..+..+++.+|++++||++|++++|++|++.....+ ...+.+.+.+++.+|+.+++.+++++++||||+|||||+
T Consensus 2 ~~~~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~-----~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~ 76 (238)
T KOG0223|consen 2 SGELLSVSFLRALIAEFLATFLFVFAGCGSVVVNPK-----YGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTL 76 (238)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----cCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHH
Confidence 356678999999999999999999999999876554 124566888999999999999999999999999999999
Q ss_pred HHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCC----CCceeccCCCCchhHHHHHHHHHHHHHHHHHHHhccCC
Q 025865 88 GLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL----AVPTHNVAAGVGAIEGVVMEIIITFGLVYTVYATAADP 163 (247)
Q Consensus 88 ~~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~E~~~T~~l~~~i~~~~~~~ 163 (247)
++++.|++++.++..|+++|++|+++|+.+.+.+.+++ ......+.++.+..|+++.|++.||.|+++++++..|+
T Consensus 77 a~~~~~~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~ 156 (238)
T KOG0223|consen 77 AFAVGGKISLFRAVAYIVAQLLGAIAGAALLKVVTPGQYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDP 156 (238)
T ss_pred HHHHhCCCcHHHhHHHHHHHHHHHHHHHHHHheecCcccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecC
Confidence 99999999999999999999999999999999998763 34556678889999999999999999999999977888
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhhcCCCCCCcChhhhHHHHhccCCCCceeeeeccccHHHHHHHHHHHHHhcCCCCCCC
Q 025865 164 KKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVGPLIGGGLAGLIYGNVFMHSEHAPL 243 (247)
Q Consensus 164 ~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~~~~~~~~~~wvy~~~p~~Ga~~a~~~~~~~~~~~~~~~~ 243 (247)
|+. .+.|+.||+++.+.+++++++||++|||||+|||++..++|+++|+||++|++|+++++++|+.++.+..+|+.
T Consensus 157 ~~~---~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~~w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~~~~~~ 233 (238)
T KOG0223|consen 157 RRS---ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYGSWDDHWIYWVGPLLGAILAALIYRLVFIPDESEPT 233 (238)
T ss_pred CCc---ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhcCCCcEEEEEhhHHHHHHHHHHHHHHhccCcccccc
Confidence 864 68999999999999999999999999999999999999999999999999999999999999999999866655
Q ss_pred CC
Q 025865 244 SN 245 (247)
Q Consensus 244 ~~ 245 (247)
++
T Consensus 234 ~~ 235 (238)
T KOG0223|consen 234 KS 235 (238)
T ss_pred Cc
Confidence 54
No 2
>PLN00166 aquaporin TIP2; Provisional
Probab=100.00 E-value=3.2e-51 Score=349.67 Aligned_cols=241 Identities=78% Similarity=1.261 Sum_probs=202.4
Q ss_pred ccCCcCChhHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCcccchHHH
Q 025865 7 RFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHGFALFVAVAVGANISGGHVNPAVT 86 (247)
Q Consensus 7 ~~~~~~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSG~h~NPavT 86 (247)
+.+|.++.+.+|++++||+|||+|+|+++++........++......+++.+++.+|+.+++.+++++++||+|+|||+|
T Consensus 8 ~~~~~~~~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSGah~NPAvt 87 (250)
T PLN00166 8 SLGDSFSVASLKAYLSEFIATLLFVFAGVGSAIAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVT 87 (250)
T ss_pred chHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHHHHHHHHHHHhcccccccCHHHH
Confidence 44555568889999999999999999999987542222111111123466789999999999999999999999999999
Q ss_pred HHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCceeccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 025865 87 FGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNVAAGVGAIEGVVMEIIITFGLVYTVYATAADPKKG 166 (247)
Q Consensus 87 l~~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~~l~~~i~~~~~~~~~~ 166 (247)
+++++.|+++|.+.+.|+++|++|+++|+.+++.+.+++........++.+..++++.|+++|++|+++++.++.|+++.
T Consensus 88 ~~~~l~g~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~Tf~Lv~~i~~~~~~~~~~ 167 (250)
T PLN00166 88 LGLAIGGNITIITGFFYWIAQCLGSIVACLLLVFVTNGESVPTHGVAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKG 167 (250)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999988765433333344567888999999999999999999986666643
Q ss_pred CCCChhHHHHHHHHHHHHHhhcCCCCCCcChhhhHHHHhccCCCCceeeeeccccHHHHHHHHHHHHHhc-CCCCCCCCC
Q 025865 167 SLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVGPLIGGGLAGLIYGNVFM-HSEHAPLSN 245 (247)
Q Consensus 167 ~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~~~~~~~~~~wvy~~~p~~Ga~~a~~~~~~~~~-~~~~~~~~~ 245 (247)
..+...|+.+|+.+...++..+++||+++||||+||||++.++|+++|+||++|++|+++++++|+.++. +..+.|.||
T Consensus 168 ~~~~~~p~~iGl~v~~~~~~~~~~tG~~~NPAR~~gPal~~~~~~~~wvywvgPi~Ga~~aa~~y~~l~~~~~~~~~~~~ 247 (250)
T PLN00166 168 SLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLVGGALAGLIYGDVFIGSYAAAPTSE 247 (250)
T ss_pred ccccchhHHHHHHHHHHHHcccCCCCCccCchHhhHHHHhcCCCcccchhhHHHHHHHHHHHHHHHHHhcccCCCCCCCc
Confidence 3445789999999999999999999999999999999999989999999999999999999999988865 445567777
Q ss_pred CC
Q 025865 246 DY 247 (247)
Q Consensus 246 ~~ 247 (247)
||
T Consensus 248 ~~ 249 (250)
T PLN00166 248 DY 249 (250)
T ss_pred cc
Confidence 87
No 3
>PLN00027 aquaporin TIP; Provisional
Probab=100.00 E-value=1e-50 Score=347.56 Aligned_cols=244 Identities=64% Similarity=1.077 Sum_probs=205.4
Q ss_pred cccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCcccch
Q 025865 4 AFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHGFALFVAVAVGANISGGHVNP 83 (247)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSG~h~NP 83 (247)
.+++.+|...++.+|++++||++|++|+|+++++.........+....+.+++..++++|+++.+.+++++++||+|+||
T Consensus 7 ~~~~~~~~~~~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~l~~~l~~Gl~v~~~i~~~~~iSGah~NP 86 (252)
T PLN00027 7 AIGTPGEASHPDALKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAAALAHAFALFVAVSVGANISGGHVNP 86 (252)
T ss_pred cCCchHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcchHHHHHHHHHHHHHHHHHHcccCccccCh
Confidence 34444555567889999999999999999999986532221111111234567789999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCceeccCCCCchhHHHHHHHHHHHHHHHHHHHhccCC
Q 025865 84 AVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNVAAGVGAIEGVVMEIIITFGLVYTVYATAADP 163 (247)
Q Consensus 84 avTl~~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~~l~~~i~~~~~~~ 163 (247)
|+|+++++.|+++|.+.+.|+++|++|+++|+.+++...++.....+.+.++.+..++++.|+++|++|+++++.+..|+
T Consensus 87 Avtl~~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~Tf~Lv~~i~~~~~~~ 166 (252)
T PLN00027 87 AVTFGAFIGGNITLLRGILYWIAQLLGSVVACLLLKFSTGGLETSAFSLSSGVGVWNAFVFEIVMTFGLVYTVYATAVDP 166 (252)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCccHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999888765444556666778899999999999999999999876676
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhhcCCCCCCcChhhhHHHHhccCCCCceeeeeccccHHHHHHHHHHHHHhcCCC-CCC
Q 025865 164 KKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVGPLIGGGLAGLIYGNVFMHSE-HAP 242 (247)
Q Consensus 164 ~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~~~~~~~~~~wvy~~~p~~Ga~~a~~~~~~~~~~~~-~~~ 242 (247)
++...+.+.|+.+|+.+...+++.+++||+++||||+|||+++.++|+++|+||++|++|+++++++|++++.+++ +|+
T Consensus 167 ~~~~~~~~~p~~iGl~v~~~~~~~g~~TG~~~NPAR~~gPal~~~~~~~~wvy~vgP~~Ga~laa~~y~~l~~~~~~~~~ 246 (252)
T PLN00027 167 KKGDLGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWAGPLIGGGIAGLVYELIFIGSTTHEQ 246 (252)
T ss_pred ccCCccchHHHHHHHHHHHHHHhcccccccccCcchhHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 6543445889999999999999999999999999999999999999999999999999999999999999986533 344
Q ss_pred CCC-CC
Q 025865 243 LSN-DY 247 (247)
Q Consensus 243 ~~~-~~ 247 (247)
.++ ||
T Consensus 247 ~~~~~~ 252 (252)
T PLN00027 247 LPTTDY 252 (252)
T ss_pred cCCCCC
Confidence 444 86
No 4
>PLN00184 aquaporin NIP1; Provisional
Probab=100.00 E-value=2.3e-49 Score=344.43 Aligned_cols=224 Identities=32% Similarity=0.494 Sum_probs=190.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHH
Q 025865 12 FSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHGFALFVAVAVGANISGGHVNPAVTFGLAL 91 (247)
Q Consensus 12 ~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSG~h~NPavTl~~~l 91 (247)
.+.+++|++++||+|||+|+|+++++....... + ....+..+++++|+++++.+++++++||+|+|||||+++++
T Consensus 49 ~~~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~--~---~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTla~al 123 (296)
T PLN00184 49 VSVPFLQKLIAEVLGTYFLVFTGCASVVVNMQN--D---NVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFAS 123 (296)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--C---CccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHH
Confidence 455678999999999999999999887542211 1 12356778999999999999999999999999999999999
Q ss_pred hCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCC------C-ceeccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCC
Q 025865 92 GGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLA------V-PTHNVAAGVGAIEGVVMEIIITFGLVYTVYATAADPK 164 (247)
Q Consensus 92 ~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~E~~~T~~l~~~i~~~~~~~~ 164 (247)
.|+++|.+.+.|+++|++|+++|+.+++.+++... . ......+..+..++++.|+++|++|+++++++..|++
T Consensus 124 ~g~~~~~~~~~YiiaQllGA~lga~~~~~l~~~~~~~~~~~~~~~~~t~p~~s~~~af~~E~i~TfvLv~~il~~~~~~~ 203 (296)
T PLN00184 124 CGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIGSSPVGSDLQAFVMEFIVTFYLMFIISGVATDNR 203 (296)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhccccccceeeccCcCCcHHHHHHHHHHHHHHHHHHHHheeccCc
Confidence 99999999999999999999999999998875211 0 1122334457889999999999999999998855544
Q ss_pred CCCCCChhHHHHHHHHHHHHHhhcCCCCCCcChhhhHHHHhccCCCCceeeeeccccHHHHHHHHHHHHHhcCCCCCC
Q 025865 165 KGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVGPLIGGGLAGLIYGNVFMHSEHAP 242 (247)
Q Consensus 165 ~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~~~~~~~~~~wvy~~~p~~Ga~~a~~~~~~~~~~~~~~~ 242 (247)
+ .+...|+.||+++...++..+++||++|||||||||+++.+.|+++||||++|++|+++++++|+++..++.+.+
T Consensus 204 ~--~~~~~~l~IG~~v~~~~~~~g~~TG~smNPAR~~GPal~~~~~~~~WVy~vgPilGa~laal~y~~l~~~~~~~~ 279 (296)
T PLN00184 204 A--IGELAGLAIGSTVLLNVLIAAPVSSASMNPGRSLGPAMVYGCYKGIWIYIVAPTLGAIAGAWVYNTVRYTDKPLR 279 (296)
T ss_pred C--CCcchHHHHHHHHHHHHHHhcccCccccCchhhHHHHHHhhcccccchHHhHHHHHHHHHHHHHHHHhcCCCcch
Confidence 2 345789999999999999999999999999999999999889999999999999999999999999987554443
No 5
>PLN00167 aquaporin TIP5; Provisional
Probab=100.00 E-value=2.1e-48 Score=333.19 Aligned_cols=234 Identities=55% Similarity=0.974 Sum_probs=197.0
Q ss_pred cCCcCChhHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCcccchHHHH
Q 025865 8 FDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHGFALFVAVAVGANISGGHVNPAVTF 87 (247)
Q Consensus 8 ~~~~~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSG~h~NPavTl 87 (247)
.++..+++.+|++++||+|||+++|+++++........++....+.+++.+++.+|+++.+.+++++++||+|+|||+|+
T Consensus 13 ~~~~~~~~~~~~~laEflgTf~lv~~~~g~~~~~~~~~~~~~~~~~~~~~i~l~~Gl~v~~~i~~~g~iSGah~NPAvtl 92 (256)
T PLN00167 13 FQQSVTRNALRSYLAEFISTFFFVFAAVGSAMSSRKLMPDAASDPSSLLIVAIANAFALSSAVYIAANISGGHVNPAVTF 92 (256)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccCCCCcchHHHHHHHHHHHHHHHHhhcccccccCHHHHH
Confidence 45556788899999999999999999999876432211111112345778999999999999999999999999999999
Q ss_pred HHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCceeccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 025865 88 GLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNVAAGVGAIEGVVMEIIITFGLVYTVYATAADPKKGS 167 (247)
Q Consensus 88 ~~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~~l~~~i~~~~~~~~~~~ 167 (247)
+.++.|+++|++.+.|+++|++|+++|+.+++.++++...+.....++.+..++++.|+++|++|+++++.+ .|+++..
T Consensus 93 ~~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~i~T~~L~~~i~~~-~~~~~~~ 171 (256)
T PLN00167 93 GMAVGGHISVPTAMFYWISQMLASVMACLFLKVTTVGQHVPTYKIAEEMTGFGASVLEGVLTFGLVYTVYAA-GDPRRGL 171 (256)
T ss_pred HHHHhCCCcHhhhhHHHHHHHHHHHHHHHHHHHhhccccccccccCcccchHHHHHHHHHHHHHHHHHHHHh-ccccccC
Confidence 999999999999999999999999999999988875432233333345577889999999999999999987 4544433
Q ss_pred CCChhHHHHHHHHHHHHHhhcCCCCCCcChhhhHHHHhccCCCCceeeeeccccHHHHHHHHHHHHHhcCCCCCC
Q 025865 168 LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVGPLIGGGLAGLIYGNVFMHSEHAP 242 (247)
Q Consensus 168 ~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~~~~~~~~~~wvy~~~p~~Ga~~a~~~~~~~~~~~~~~~ 242 (247)
.+...|+.+|+.+....+..+++||+++||||||||+++.++|+++|+||++|++|+++++++|++++.|..++.
T Consensus 172 ~~~~~pl~iGl~v~~~~~~~g~~TG~a~NPAR~~gPal~~~~~~~~wvywvgP~~Ga~l~a~~y~~l~~~~~~~~ 246 (256)
T PLN00167 172 LGAIGPLAIGLVAGANVLAAGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLLGGAVAGLLYDNVVFPTQDDR 246 (256)
T ss_pred CCCcchHHHHHHHHHHHHhccCCCCcccCcccchHHHHhccCccCcEEEeHHHHHHHHHHHHHHHHHhCCCcCCC
Confidence 445789999999999999999999999999999999999889999999999999999999999999987766554
No 6
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=100.00 E-value=7.7e-49 Score=332.44 Aligned_cols=222 Identities=41% Similarity=0.669 Sum_probs=191.4
Q ss_pred CcCChhHHHHHHHHHHHHHHHHHHHHHHhhhccccccC-CCCCCCchHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHH
Q 025865 10 DSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKVTAD-AALDPSGLVAIAICHGFALFVAVAVGANISGGHVNPAVTFG 88 (247)
Q Consensus 10 ~~~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSG~h~NPavTl~ 88 (247)
|.++++++|++++||+||++++|+++++.........+ +.....++..+++.+|+++++.++.++++||+|+|||||++
T Consensus 1 ~~~~~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~ial~~g~~~~~~i~~~~~iSGaH~NPaVTla 80 (227)
T PF00230_consen 1 ELKSPSLWRKFLAEFIGTFLLVFFGCGSVAALNGSTSSSGSDVSGGWLQIALAWGLALAALIYAFGPISGAHFNPAVTLA 80 (227)
T ss_dssp GCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSTTSTTSSHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHhhhhhhhhhhhccccccccchhhh
Confidence 45688999999999999999999999976543333221 11122467889999999999999999999999999999999
Q ss_pred HHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCC----CCceeccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCC
Q 025865 89 LALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL----AVPTHNVAAGVGAIEGVVMEIIITFGLVYTVYATAADPK 164 (247)
Q Consensus 89 ~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~E~~~T~~l~~~i~~~~~~~~ 164 (247)
.++.|+++|++.+.|+++|++|+++|+.+.+.++++. ......+.++.+..++++.|+++|++|+++++.+.++++
T Consensus 81 ~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~t~il~~~i~~~~~~~~ 160 (227)
T PF00230_consen 81 FALTGRISWKKAIVYIIAQFLGAFLGALLVYALYPDSNSAAGIFATTPPPGISLGQAFFSEFIGTFILVLVILAVADDKR 160 (227)
T ss_dssp HHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHSTHHHTCTTTTSCGSTTTSSHHHHHHHHHHHHHHHHHHHHHHTSTTS
T ss_pred eeeeeeecccceeeEEeeccccccccccchhhcccCcccccccccccccccchhhhhhhhhhhhhhHHHhhhhhhccccc
Confidence 9999999999999999999999999999999988752 223334677789999999999999999999999976666
Q ss_pred CCCCCChhHHHHHHHHHHHHHhhcCCCCCCcChhhhHHHHhccCCCCceeeeeccccHHHHHHHHHH
Q 025865 165 KGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVGPLIGGGLAGLIY 231 (247)
Q Consensus 165 ~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~~~~~~~~~~wvy~~~p~~Ga~~a~~~~ 231 (247)
+...+.+.|+.||+.+....+..++.||+++||||+||++++.+.|+++|+||++|++|+++++++|
T Consensus 161 ~~~~~~~~p~~ig~~v~~~~~~~~~~tG~~~NPAr~~g~~l~~~~~~~~wvy~~~P~~Ga~~a~~~Y 227 (227)
T PF00230_consen 161 KFPLGPLAPLAIGLTVGALVLAGGPYTGASLNPARALGPALFSGIWDYFWVYWVGPFIGAILAALLY 227 (227)
T ss_dssp SSTSSGGHHHHHHHHHHHHHHHHHHHHST-SSHHHHHHHHHHHTHHTTTTHHHHHHHHHHHHHHHHH
T ss_pred ccccccccceeEEEEEeecccccccccccccCchhhcCceeecccCCeEEEEEehHHHHHHHHHhhC
Confidence 5554567899999999999999999999999999999999999999999999999999999999987
No 7
>PLN00026 aquaporin NIP; Provisional
Probab=100.00 E-value=2.1e-48 Score=337.70 Aligned_cols=225 Identities=35% Similarity=0.529 Sum_probs=190.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHh
Q 025865 13 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHGFALFVAVAVGANISGGHVNPAVTFGLALG 92 (247)
Q Consensus 13 ~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSG~h~NPavTl~~~l~ 92 (247)
+.+++|++++||+|||+|+|+++++........ ...+++.+++++|+++++.+++++++||+|+|||||+++++.
T Consensus 67 ~~~~~r~~laEfiGTflLvf~g~~~~~~~~~~~-----~~~~~~~ial~~GlaV~~~i~~~g~ISGaHlNPAVTla~al~ 141 (298)
T PLN00026 67 DVSLTRKLGAEFVGTFILIFAATAGPIVNQKYD-----GAETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAAL 141 (298)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccccC-----CccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHh
Confidence 446789999999999999999987654322111 113466778999999999999999999999999999999999
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCceeccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCChh
Q 025865 93 GQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNVAAGVGAIEGVVMEIIITFGLVYTVYATAADPKKGSLGTIA 172 (247)
Q Consensus 93 g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~~l~~~i~~~~~~~~~~~~~~~~ 172 (247)
|+++|++.+.|+++|++|+++|+++++.++++...... ..++.+..++++.|+++|++|+++++++..|+++ .+...
T Consensus 142 g~~~~~~~~~YiiaQilGAi~aa~~~~~~~~~~~~~g~-t~p~~s~~~a~~~Efi~TfiLv~vi~~v~~~~~~--~~~~~ 218 (298)
T PLN00026 142 RHFPWKHVPAYIAAQVSASICASFALKGVFHPFMSGGV-TVPSVSTGQAFALEFIITFNLLFVVTAVATDTRA--VGELA 218 (298)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCce-eeecccHHHHHHHHHHHHHHHHHhheeeecCCCC--cCCcc
Confidence 99999999999999999999999999998864222111 2345688999999999999999999987555543 23467
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcChhhhHHHHhccCCCCceeeeeccccHHHHHHHHHHHHHhcCCCCCCCCC
Q 025865 173 PIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVGPLIGGGLAGLIYGNVFMHSEHAPLSN 245 (247)
Q Consensus 173 ~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~~~~~~~~~~wvy~~~p~~Ga~~a~~~~~~~~~~~~~~~~~~ 245 (247)
++.+|++++..++..+++||+++||||+|||++..++|+++|+||++|++|+++++++|+.+..+++++..|+
T Consensus 219 ~l~iGl~V~~~~l~~g~~TGa~mNPARtlgPal~~~~~~~~wVy~vaPilGAilga~ly~~~~~~~~~~~~~~ 291 (298)
T PLN00026 219 GIAVGATVMLNILVAGPSTGGSMNPVRTLGPAVAAGNYRAIWIYLVAPTLGALAGAGTYTAVKLREEDGDPPR 291 (298)
T ss_pred chHHHHHHHHHHHHhcccCccccChHHHHHHHHhcCCchheeHHHHHHHHHHHHHHHHHHHHhCccccccChh
Confidence 8999999999999999999999999999999999889999999999999999999999999977666655443
No 8
>PLN00182 putative aquaporin NIP4; Provisional
Probab=100.00 E-value=1.7e-47 Score=330.86 Aligned_cols=215 Identities=32% Similarity=0.530 Sum_probs=186.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHhCC
Q 025865 15 GSFKAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHGFALFVAVAVGANISGGHVNPAVTFGLALGGQ 94 (247)
Q Consensus 15 ~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSG~h~NPavTl~~~l~g~ 94 (247)
..+|++++||+|||+|+|+++++...... .. ...+...+++++|+++++.+++++++||+|+|||||+++++.|+
T Consensus 40 ~~~~~~~aEflgTflLvf~g~g~~~~~~~-~~----~~~~~~~iala~Gl~v~~~i~~~g~iSGah~NPAVTla~~~~~~ 114 (283)
T PLN00182 40 CLTQKLIAEMIGTYFIIFSGCGVVVVNVL-YG----GTITFPGICVTWGLIVMVMIYSTGHISGAHFNPAVTVTFAIFRR 114 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cC----CCcchHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHcC
Confidence 56799999999999999999997654221 11 11345677899999999999999999999999999999999999
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCceeccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCChhHH
Q 025865 95 ITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNVAAGVGAIEGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPI 174 (247)
Q Consensus 95 ~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~~l~~~i~~~~~~~~~~~~~~~~~~ 174 (247)
++|.+.+.|+++|++|+++|+++++.+++......+...++.+..++++.|+++|++|+++++++..+++. .+...++
T Consensus 115 ~~~~~~~~Yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~p~~s~~~a~~~E~l~TfiLv~~i~~~~~~~~~--~~~~~~l 192 (283)
T PLN00182 115 FPWYQVPLYIGAQLTGSLLASLTLRLMFNVTPEAFFGTTPTDSSGQALVAEIIISFLLMFVISGVATDSRA--VGELAGI 192 (283)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeeCCCCcchHHHHHHHHHHHHHHHHHHHhheecccc--CCcchhH
Confidence 99999999999999999999999998885433344445556688899999999999999999987555442 3346899
Q ss_pred HHHHHHHHHHHhhcCCCCCCcChhhhHHHHhccCCCCceeeeeccccHHHHHHHHHHHHHhc
Q 025865 175 AIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVGPLIGGGLAGLIYGNVFM 236 (247)
Q Consensus 175 ~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~~~~~~~~~~wvy~~~p~~Ga~~a~~~~~~~~~ 236 (247)
.+|+++.+.+++.+++||+++||||+|||+++.++|+++|+||++|++|+++++++|+++..
T Consensus 193 ~iGl~V~~~~~~~g~~SGa~lNPARt~gpal~~~~~~~~wvY~vap~lGA~lgally~~l~~ 254 (283)
T PLN00182 193 AVGMTIILNVFVAGPISGASMNPARSLGPAIVMGRYKGIWVYIVGPFVGIIAGGFVYNLIRF 254 (283)
T ss_pred HHHHHHHHHHHHccccCccccChHHHHHHHHHhccccceeHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999889999999999999999999999999975
No 9
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.9e-49 Score=334.80 Aligned_cols=228 Identities=26% Similarity=0.396 Sum_probs=197.8
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHH
Q 025865 11 SFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHGFALFVAVAVGANISGGHVNPAVTFGLA 90 (247)
Q Consensus 11 ~~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSG~h~NPavTl~~~ 90 (247)
..++++.|++++||+||++|++++++++.+.... ++ ..++++.+.++||+++++.+++.+++||||+|||||++++
T Consensus 26 ~i~~~l~Re~LAEFlGT~vL~~~G~g~v~Q~vls-~g---~~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a~~ 101 (316)
T KOG0224|consen 26 HIRNELLREFLAEFLGTFVLVVFGLGSVAQAVLS-GG---TGGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLAMC 101 (316)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhccceeEEEEec-cC---CCCceEEEEehHhHHHHHHHHhhccccccccCHHHHHHHH
Confidence 3477889999999999999999999988654332 21 3456777889999999999999999999999999999999
Q ss_pred HhCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcC--------C--------CCcee--ccCCCCchhHHHHHHHHHHHHH
Q 025865 91 LGGQITILTGIFYWIAQLLGSIVASFLLKVVTGG--------L--------AVPTH--NVAAGVGAIEGVVMEIIITFGL 152 (247)
Q Consensus 91 l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~--------~--------~~~~~--~~~~~~~~~~~~~~E~~~T~~l 152 (247)
+.||++|+|.++|+++|++||++|++.+|.++.+ + ..+++ .|.|.++.+++|+.|+++|.+|
T Consensus 102 ~~g~~p~~k~p~Y~~aQ~iGAF~gaa~~y~~y~d~i~~f~Gg~~~vtgp~aTAgiFaTyP~p~ls~~n~F~DqfigTa~L 181 (316)
T KOG0224|consen 102 ILGRLPWKKFPVYVLAQFIGAFLGAATVYGLYYDAINEFDGGNRTVTGPKATAGIFATYPAPHLSLWNGFFDQFIGTAML 181 (316)
T ss_pred HhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEecCCccceEEEeecCchHhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887642 1 12333 3567789999999999999999
Q ss_pred HHHHHHhccCCCCCCCCChhHHHHHHHHHHHHHhhcCCCCCCcChhhhHHHHhccC----C-------CCceeeeecccc
Q 025865 153 VYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASG----N-------FQDNWIYWVGPL 221 (247)
Q Consensus 153 ~~~i~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~~~~~----~-------~~~~wvy~~~p~ 221 (247)
+..++++ .|+|+..++.+.|+.+|+.+.++..+.+.++|..+|||||||||++.. + -.+.|++|++|+
T Consensus 182 ~~~l~aI-~D~rN~~p~g~~p~~iG~lv~~Ig~s~G~N~GyaiNPARDlgPRlF~~~aGyG~~vF~~~~~~~WvPivgPl 260 (316)
T KOG0224|consen 182 VLCLFAI-TDKRNPIPTGLHPLVIGILVVAIGMSLGYNTGYAINPARDLGPRLFTSIAGYGPEVFSAGHNWWWVPIVGPL 260 (316)
T ss_pred HhheeEE-ecCCCCCCcchhHHHHHHHHHHHHHHhhcccCcccCcccccchHHHHHHHhcchhhcccCCceeeeeehhhh
Confidence 9999998 788887777899999999999999999999999999999999999832 1 157899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCC
Q 025865 222 IGGGLAGLIYGNVFMHSEHAPL 243 (247)
Q Consensus 222 ~Ga~~a~~~~~~~~~~~~~~~~ 243 (247)
+|+++++++|+++...+.++++
T Consensus 261 ~Gai~G~~iY~~~Ig~h~~~~~ 282 (316)
T KOG0224|consen 261 IGAILGGWIYDFFIGFHIPREP 282 (316)
T ss_pred hhhhhhhhhheeeeeccCCCCC
Confidence 9999999999999887776433
No 10
>PTZ00016 aquaglyceroporin; Provisional
Probab=100.00 E-value=5.4e-47 Score=330.43 Aligned_cols=220 Identities=29% Similarity=0.440 Sum_probs=185.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHhC
Q 025865 14 LGSFKAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHGFALFVAVAVGANISGGHVNPAVTFGLALGG 93 (247)
Q Consensus 14 ~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSG~h~NPavTl~~~l~g 93 (247)
++++|++++||+||++++|+++++...... .+ .+.+...+++++|+++.+.+++++++||+|+|||||+++++.|
T Consensus 47 ~~~~~~~laEfigT~llvf~g~g~~~~~~~-~~----~~~~~~~ial~~Glav~~~i~~~g~iSG~h~NPAVTla~~l~g 121 (294)
T PTZ00016 47 RPNVREYVAEFLGTFVLLFFGEGVVATTHT-VG----NNGDYLAITIGWGLGVTFGLLVSAGISGGHLNPAVTLGNAVFG 121 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-cC----CCCCcHHHHHHHHHHHHHHHHHhcccCcCccCHHHHHHHHHhc
Confidence 667899999999999999999987654221 11 1234667899999999999999999999999999999999999
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhcCC-----------------CCceeccCCCCchhHHHHHHHHHHHHHHHHH
Q 025865 94 QITILTGIFYWIAQLLGSIVASFLLKVVTGGL-----------------AVPTHNVAAGVGAIEGVVMEIIITFGLVYTV 156 (247)
Q Consensus 94 ~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~E~~~T~~l~~~i 156 (247)
+++|.+.+.|+++|++|+++|+++++.++++. ....+.+.++.+..++++.|+++|++|++++
T Consensus 122 ~i~~~~~~~YiiaQ~lGa~~ga~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~t~p~~s~~~a~~~E~i~T~iLv~~i 201 (294)
T PTZ00016 122 KFPWKKLPGYFVAQLLGAFVGAACVYGLYYGFFKDHGIPELPWETMANGFAGVFATYPREGNFYAIFSELILTAILLLVI 201 (294)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCcccccccccccccceeeCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999876531 0122344556778899999999999999999
Q ss_pred HHhccCCCCCCCCChhHHHHHHHHHHHHHhhcCCCCCCcChhhhHHHHhcc------CCCC----ceeeeeccccHHHHH
Q 025865 157 YATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAS------GNFQ----DNWIYWVGPLIGGGL 226 (247)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~~~~------~~~~----~~wvy~~~p~~Ga~~ 226 (247)
+.+ .|+++.......|+.+|+.+....++.++.||+++|||||||||++. .+|+ ++||||++|++|+++
T Consensus 202 la~-~d~~~~~~~~~~pl~IGl~v~~i~~~~g~~TG~smNPAR~fGPal~~~~~~g~~~~~~~~~~~WVy~vgP~vGa~~ 280 (294)
T PTZ00016 202 LAI-TDPNNCPAFNYLPVAVGLLVFVIGISFGGNTGYALNPARDLGPRLFSAILWGSEVFTKDNYYFWVPLVAPFVGAVL 280 (294)
T ss_pred HHh-ccCccCCCcCcccHHHHHHHHHHHHhccCCCCCcccchhhHHHHHHHHHhccccccCcCCceeeeeehHHHHHHHH
Confidence 988 45554333457899999999999999999999999999999999985 2454 689999999999999
Q ss_pred HHHHHHHHhcCCC
Q 025865 227 AGLIYGNVFMHSE 239 (247)
Q Consensus 227 a~~~~~~~~~~~~ 239 (247)
++++|+++..+..
T Consensus 281 aally~~ll~~~~ 293 (294)
T PTZ00016 281 GMFLYDKFIPPLI 293 (294)
T ss_pred HHHHHHHHhCCCC
Confidence 9999999986654
No 11
>PRK05420 aquaporin Z; Provisional
Probab=100.00 E-value=1.6e-46 Score=317.81 Aligned_cols=215 Identities=32% Similarity=0.556 Sum_probs=180.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHhCCCC
Q 025865 17 FKAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHGFALFVAVAVGANISGGHVNPAVTFGLALGGQIT 96 (247)
Q Consensus 17 ~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSG~h~NPavTl~~~l~g~~~ 96 (247)
+|++++||+||++++|+++++....+...+ +..+++.+++++|+++++.+++++++||+|+|||||+++++.|+++
T Consensus 2 ~~~~laEfigT~~lv~~g~~~~~~~~~~~~----~~~~~~~ial~~Gl~v~~~i~~~g~iSG~h~NPAvtl~~~~~~~i~ 77 (231)
T PRK05420 2 FKKLAAEFFGTFWLVFGGCGSAVLAAAFPE----LGIGFLGVALAFGLTVLTMAYAVGHISGGHFNPAVSVGLWAGGRFP 77 (231)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHhhcccCC----CCCchHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHhCCCC
Confidence 689999999999999999997643222111 1234667899999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhcCCCCc-----ee------c-cCCCCchhHHHHHHHHHHHHHHHHHHHhccCCC
Q 025865 97 ILTGIFYWIAQLLGSIVASFLLKVVTGGLAVP-----TH------N-VAAGVGAIEGVVMEIIITFGLVYTVYATAADPK 164 (247)
Q Consensus 97 ~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~-----~~------~-~~~~~~~~~~~~~E~~~T~~l~~~i~~~~~~~~ 164 (247)
|++.+.|+++|++|+++|+.+++.++.++... .+ . .+...+..++++.|+++|++|+++++.+ .|++
T Consensus 78 ~~~~~~Y~~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~iLv~~i~~~-~~~~ 156 (231)
T PRK05420 78 AKELVPYIIAQVVGGIAAAAVLYLIASGKAGFDLAGSGFASNGYGEHSPGGYSLLAALVCEVVLTAFFLLVILGA-TDKR 156 (231)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhCCccccccccccccccccccCCCCcccHHHHHHHHHHHHHHHHHHHHHH-hCCC
Confidence 99999999999999999999988877542110 00 0 1123467899999999999999999987 4554
Q ss_pred CCCCCChhHHHHHHHHHHHHHhhcCCCCCCcChhhhHHHHhccCCC--CceeeeeccccHHHHHHHHHHHHHhcCC
Q 025865 165 KGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNF--QDNWIYWVGPLIGGGLAGLIYGNVFMHS 238 (247)
Q Consensus 165 ~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~~~~~~~--~~~wvy~~~p~~Ga~~a~~~~~~~~~~~ 238 (247)
+ .+...|+.+|+.+....+.++++||++|||||||||+++.++| +++|+||++|++|+++++++|++++.++
T Consensus 157 ~--~~~~~p~~iGl~v~~~~~~~~~~TG~s~NPAR~~gpal~~g~~~~~~~wvy~vgP~~Ga~laa~~y~~l~~~~ 230 (231)
T PRK05420 157 A--PAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTGVALFVGGWALEQLWLFWVAPIVGAIIGGLIYRLLLEKD 230 (231)
T ss_pred C--CCcchHHHHHHHHHHHHHHhhccCCCccCcHHHHHHHHHhCCCCccceEEeehHHHHHHHHHHHHHHHHhccC
Confidence 3 2347899999999999999999999999999999999998766 5899999999999999999999986554
No 12
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.3e-47 Score=318.35 Aligned_cols=218 Identities=33% Similarity=0.509 Sum_probs=186.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHhCC
Q 025865 15 GSFKAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHGFALFVAVAVGANISGGHVNPAVTFGLALGGQ 94 (247)
Q Consensus 15 ~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSG~h~NPavTl~~~l~g~ 94 (247)
++.|++++||+||++|++++++++........ .....++..++++||+++.+.+|+++++||+|+|||||+++++.|+
T Consensus 3 ~~~~~~~aEflGT~~Li~~G~G~~a~~~l~~~--~~~~~~~~~i~~~wGl~V~~~iy~~g~iSGaHlNPAVTi~la~~g~ 80 (241)
T COG0580 3 TLTKKLLAEFLGTFLLIFFGNGSVAAVALKGS--KALGGGWLGIALAWGLGVLVAIYAFGGISGAHLNPAVTIALAVRGR 80 (241)
T ss_pred cHHHHHHHHHHHHHHHHHhhccHHHHHHhccc--cccccceeehhHHHHHHHHHHHHhccCcCccccChHHHHHHHHhCC
Confidence 46788999999999999999999876543221 1234567789999999999999999999999999999999999999
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhcCC----------CCceeccCCC-CchhHHHHHHHHHHHHHHHHHHHhccCC
Q 025865 95 ITILTGIFYWIAQLLGSIVASFLLKVVTGGL----------AVPTHNVAAG-VGAIEGVVMEIIITFGLVYTVYATAADP 163 (247)
Q Consensus 95 ~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~----------~~~~~~~~~~-~~~~~~~~~E~~~T~~l~~~i~~~~~~~ 163 (247)
++|++++.||++|++|+++|+.+++.++++. ....+++.|+ .+..++++.|+++|++|+++++++.+|+
T Consensus 81 fp~~~v~~YivAQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~t~p~~~~~~~~fl~E~v~T~~L~~~Ila~~~~~ 160 (241)
T COG0580 81 FPWRKVLPYIVAQVLGAFAGAALLYLLYYGKILETEGDPLASLGAFSTSPGGYSLGQAFLIEFVGTFVLVLGILALTDDG 160 (241)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhcCCchhhccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999999887631 1233444443 3678999999999999999999986655
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhhcCCCCCCcChhhhHHHHhccC---------CCCceeeeeccccHHHHHHHHHHHHH
Q 025865 164 KKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASG---------NFQDNWIYWVGPLIGGGLAGLIYGNV 234 (247)
Q Consensus 164 ~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~~~~~---------~~~~~wvy~~~p~~Ga~~a~~~~~~~ 234 (247)
+. .+.+.|+.+|+.++.+.++.++.||.++|||||+|||+... +++|+|+||++|++|+++++++|+.+
T Consensus 161 ~~--~~~~apl~iGllv~~i~~s~g~~TG~aiNPARdlGprl~~~~~g~~~~~g~~~y~wipvigpiiGa~lg~~~~~~~ 238 (241)
T COG0580 161 NA--NAGFAPLAIGLLVTAIGLSLGPTTGTAINPARDLGPRLAHSLAGWAANKGDSSYFWIPVIGPIVGAILGALLYKLL 238 (241)
T ss_pred cc--cccchHHHHHHHHHHHHHHhcCCCCCccChHHHHHHHHHHHhcCcccCCCCCCeEeeeehHHHHHHHHHHHHHHHH
Confidence 54 33489999999999999999999999999999999999432 23589999999999999999999987
Q ss_pred hc
Q 025865 235 FM 236 (247)
Q Consensus 235 ~~ 236 (247)
+.
T Consensus 239 ~~ 240 (241)
T COG0580 239 LG 240 (241)
T ss_pred cc
Confidence 64
No 13
>PLN00183 putative aquaporin NIP7; Provisional
Probab=100.00 E-value=1.6e-44 Score=311.30 Aligned_cols=223 Identities=31% Similarity=0.519 Sum_probs=189.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHH
Q 025865 12 FSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHGFALFVAVAVGANISGGHVNPAVTFGLAL 91 (247)
Q Consensus 12 ~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSG~h~NPavTl~~~l 91 (247)
.+.+.+|++++||++||+++|+++++...... .. ...++...++.+|+++.+.+++++++||+|+|||+|+++++
T Consensus 40 ~~~~~~~~~laEfigTfllvf~~~g~~~~~~~-~~----~~~~~~~~al~~Gl~V~~~i~~~g~vSGah~NPAvTla~~l 114 (274)
T PLN00183 40 MDLNPARMVLAEMVGTFILMFCVCGIIASTQL-SG----GEVGLLEYAATAGLTVVVVVFSIGSISGAHVNPSVTIAFAT 114 (274)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cC----CccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHH
Confidence 34566899999999999999999987654221 11 12345668899999999999999999999999999999999
Q ss_pred hCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCceeccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCh
Q 025865 92 GGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNVAAGVGAIEGVVMEIIITFGLVYTVYATAADPKKGSLGTI 171 (247)
Q Consensus 92 ~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~~l~~~i~~~~~~~~~~~~~~~ 171 (247)
.|+++|.+.+.|+++|++|+++|+.+++.+++... ......+..+..++++.|+++|++|+++++.+..++++ .+..
T Consensus 115 ~g~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~-~~~~~~p~~~~~~~~~~E~v~T~iLv~~i~~~~~~~~~--~~~~ 191 (274)
T PLN00183 115 FGHFPWSKVPLYITAQTVGSVLATYVGVSVYGVKA-DLMTTKPAQGCSSAFWVEFIATFIVMFLAASLTSQPQS--LGHL 191 (274)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccCCCcccHHHHHHHHHHHHHHHHHhhheeeccccC--CCCc
Confidence 99999999999999999999999999988886432 23333445567899999999999999999987544432 2345
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCcChhhhHHHHhccCCCCceeeeeccccHHHHHHHHHHHHHhcCCCCCC
Q 025865 172 APIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVGPLIGGGLAGLIYGNVFMHSEHAP 242 (247)
Q Consensus 172 ~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~~~~~~~~~~wvy~~~p~~Ga~~a~~~~~~~~~~~~~~~ 242 (247)
.++.+|+++++.+++.+++||+++||||+|+|++...+|+++|+||++|++|+++++++|+.++.+.....
T Consensus 192 ~~l~iGl~v~~~v~~~g~~TG~~~NPArtlgpai~~~~~~~~wvy~vapilGailaa~l~~~l~~~~~~~~ 262 (274)
T PLN00183 192 SGFVIGIAIGLAVLITGPVSGGSMNPARSLGPAIVSWDFKDIWIYITAPTIGAVAGALMFHLLRLRTQPCS 262 (274)
T ss_pred eehHHHHHHHHHHHhccCCCCCEeCHHHHHHHHHhCCChhheehHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 78999999999999999999999999999999999889999999999999999999999999987765543
No 14
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=100.00 E-value=2.4e-43 Score=298.92 Aligned_cols=213 Identities=46% Similarity=0.760 Sum_probs=180.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHhCCCCc
Q 025865 18 KAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHGFALFVAVAVGANISGGHVNPAVTFGLALGGQITI 97 (247)
Q Consensus 18 ~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSG~h~NPavTl~~~l~g~~~~ 97 (247)
|++++||+||+++++.++++....+. .++ ...++...++.+|+.+.+.+++++++||+|+|||+|+++++.|+++|
T Consensus 1 r~~~~E~~gT~~lv~~~~~~~~~~~~-~~~---~~~~~~~~~~~~gl~v~~~~~~~~~~sga~~NPa~t~~~~~~~~~~~ 76 (228)
T cd00333 1 RKYLAEFLGTFLLVFFGCGSVLAVKL-AGG---ASGGLLGIALAWGFAIFVLVYAVGHISGGHINPAVTLALAVGGRFPL 76 (228)
T ss_pred ChhhHHHHHHHHHHHHHhHHHhhccc-cCC---CCCcHHHHHHHHHHHHHHHHHHhccCCCCeEcHHHHHHHHHhCCCCH
Confidence 67899999999999999998754332 111 22346678999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCC-----Cc-----e--eccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCC
Q 025865 98 LTGIFYWIAQLLGSIVASFLLKVVTGGLA-----VP-----T--HNVAAGVGAIEGVVMEIIITFGLVYTVYATAADPKK 165 (247)
Q Consensus 98 ~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~-----~~-----~--~~~~~~~~~~~~~~~E~~~T~~l~~~i~~~~~~~~~ 165 (247)
++.+.|+++|++|+++|+.+.+.+++++. .. . ..+.++.+..++++.|+++|++|++.++.+..++++
T Consensus 77 ~~~~~y~~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~~Lv~~i~~~~~~~~~ 156 (228)
T cd00333 77 IRVIPYIIAQLLGAILGAALLYGLYYGLYLEFLGANNIVAGIFGTYPSPGVSNGNAFFVEFIGTFILVLVVFATTDDPNG 156 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcCCccccccceeccCCCCCccHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 99999999999999999999888875321 11 1 123456688999999999999999999998544332
Q ss_pred CCCCChhHHHHHHHHHHHHHhhcCCCCCCcChhhhHHHHhccCC---CCceeeeeccccHHHHHHHHHHHHH
Q 025865 166 GSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGN---FQDNWIYWVGPLIGGGLAGLIYGNV 234 (247)
Q Consensus 166 ~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~~~~~~---~~~~wvy~~~p~~Ga~~a~~~~~~~ 234 (247)
.......++.+|+++....+..+++||+++||||++++++..+. |+++|+||++|++|+++++++|+++
T Consensus 157 ~~~~~~~~~~iGl~v~~~~~~~g~~sG~~~NPAr~~g~~i~~~~~~~~~~~~vy~vap~lGai~aa~l~~~~ 228 (228)
T cd00333 157 PPPGGLAPLAIGLLVAAIGLAGGPITGASMNPARSLGPALFTGLARHWHYFWVYWVGPLIGAIAGALVYDYV 228 (228)
T ss_pred CCCCCcHHHHHHHHHHHHHHHhhcccccccCHhhchHHHHHhccccccceeehhhhHHHHHHHHHHHHHHhC
Confidence 23345789999999999999999999999999999999999875 9999999999999999999999864
No 15
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=100.00 E-value=3.3e-42 Score=289.67 Aligned_cols=210 Identities=40% Similarity=0.672 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHhCCCCcchhH
Q 025865 22 AEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHGFALFVAVAVGANISGGHVNPAVTFGLALGGQITILTGI 101 (247)
Q Consensus 22 ~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSG~h~NPavTl~~~l~g~~~~~~~~ 101 (247)
+||+||++++++++++..............+.++..+++.+|+.+.+.+++++++||+|+|||+|+++++.|+++|++.+
T Consensus 1 aEf~gT~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~Gl~v~~~~~~~~~~sg~h~NPavt~~~~l~~~~~~~~~~ 80 (216)
T TIGR00861 1 AEFLGTFLLVFFGVGSALGVNVAGAYGAVGGGQFLGVALAFGLAVATLVYCVGGISGAHLNPAVTIALLLGRRFPLKRVP 80 (216)
T ss_pred CcHHHHHHHHHHHHHHHHhhhcccccCCCCCcchHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHhCCCCHHHHH
Confidence 59999999999999987653222110111122467889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC---Ccee-ccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCChhHHHHH
Q 025865 102 FYWIAQLLGSIVASFLLKVVTGGLA---VPTH-NVAAGVGAIEGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIG 177 (247)
Q Consensus 102 ~yi~aQ~~Ga~~g~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~E~~~T~~l~~~i~~~~~~~~~~~~~~~~~~~ig 177 (247)
.|+++|++|+++|+.+.+.++++.. .... ...++.+..++++.|+++|++|+++++....++++...+...++.+|
T Consensus 81 ~y~~aQ~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~~~~~~~~~~iG 160 (216)
T TIGR00861 81 VYIVAQLIGAILGAALLYGLTSGLFPGNLAVNGSGAAGVSSGQAFFVEFIGTAILVLVIFATTDPRNRVPRGGFAPLAIG 160 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccccCCccccCCCCCcccHHHHHHHHHHHHHHHHHHHheeecCCCCCCCCccHHHHHH
Confidence 9999999999999999998876431 1111 12345688899999999999999999987444332223337899999
Q ss_pred HHHHHHHHhhcCCCCCCcChhhhHHHHhccC--CCCceeeeeccccHHHHHHHHHH
Q 025865 178 FIVGANILAAGPFSGGSMNPARSFGPAVASG--NFQDNWIYWVGPLIGGGLAGLIY 231 (247)
Q Consensus 178 ~~v~~~~~~~~~~sG~~lNPAr~lg~~~~~~--~~~~~wvy~~~p~~Ga~~a~~~~ 231 (247)
+.+...++..+++||+++||||+|++++..+ +|+++|+||++|++|+++++.+|
T Consensus 161 ~~v~~~~~~~g~~sG~~~NPAr~l~~~l~~~~~~~~~~~vy~vap~~Ga~~a~~~y 216 (216)
T TIGR00861 161 LLVFLIHLSMGPYTGTGMNPARSLGPALFAGLAGWGNHWVYWVGPIIGAILGALVY 216 (216)
T ss_pred HHHHHHHHhCCCCcccccCchhhhhHHHHhccccccceeHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987 89999999999999999998875
No 16
>PLN00184 aquaporin NIP1; Provisional
Probab=99.66 E-value=2.1e-16 Score=138.06 Aligned_cols=104 Identities=23% Similarity=0.299 Sum_probs=85.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhccCCCC-CCCCCh--hHHHHHHHHHHHHHhhcCCCCCCcChhhhHHHHhccC-CC
Q 025865 135 GVGAIEGVVMEIIITFGLVYTVYATAADPKK-GSLGTI--APIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASG-NF 210 (247)
Q Consensus 135 ~~~~~~~~~~E~~~T~~l~~~i~~~~~~~~~-~~~~~~--~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~~~~~-~~ 210 (247)
+.+..+.++.|+++|++|++++++....... ...... .++.+|+++++.+++.+++||+|+||||++++++.+. +|
T Consensus 50 ~~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~~~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTla~al~g~~~~ 129 (296)
T PLN00184 50 SVPFLQKLIAEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCGRFPL 129 (296)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHhCCCCH
Confidence 3457789999999999999999886432211 111123 4566699999999999999999999999999999876 89
Q ss_pred CceeeeeccccHHHHHHHHHHHHHhcCC
Q 025865 211 QDNWIYWVGPLIGGGLAGLIYGNVFMHS 238 (247)
Q Consensus 211 ~~~wvy~~~p~~Ga~~a~~~~~~~~~~~ 238 (247)
.+.|+||++|++|+++|+.+++.++...
T Consensus 130 ~~~~~YiiaQllGA~lga~~~~~l~~~~ 157 (296)
T PLN00184 130 KQVPAYVISQVIGSTLAAATLRLLFGLD 157 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 9999999999999999999999988543
No 17
>PLN00026 aquaporin NIP; Provisional
Probab=99.66 E-value=1.8e-16 Score=138.29 Aligned_cols=106 Identities=21% Similarity=0.205 Sum_probs=87.6
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHhccCCCC-CCCCC--hhHHHHHHHHHHHHHhhcCCCCCCcChhhhHHHHhccC-
Q 025865 133 AAGVGAIEGVVMEIIITFGLVYTVYATAADPKK-GSLGT--IAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASG- 208 (247)
Q Consensus 133 ~~~~~~~~~~~~E~~~T~~l~~~i~~~~~~~~~-~~~~~--~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~~~~~- 208 (247)
.++.+..|.++.|+++||+|++++++....+++ ..... ..++.+|+++++.+++.+++||+|+||||++++++.++
T Consensus 65 ~~~~~~~r~~laEfiGTflLvf~g~~~~~~~~~~~~~~~~~~ial~~GlaV~~~i~~~g~ISGaHlNPAVTla~al~g~~ 144 (298)
T PLN00026 65 PPDVSLTRKLGAEFVGTFILIFAATAGPIVNQKYDGAETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALRHF 144 (298)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhCCC
Confidence 345677899999999999999999875332221 11112 23578999999999999999999999999999999866
Q ss_pred CCCceeeeeccccHHHHHHHHHHHHHhcCC
Q 025865 209 NFQDNWIYWVGPLIGGGLAGLIYGNVFMHS 238 (247)
Q Consensus 209 ~~~~~wvy~~~p~~Ga~~a~~~~~~~~~~~ 238 (247)
+|.+.|+||++|++|+++|+++++.++.+.
T Consensus 145 ~~~~~~~YiiaQilGAi~aa~~~~~~~~~~ 174 (298)
T PLN00026 145 PWKHVPAYIAAQVSASICASFALKGVFHPF 174 (298)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 799999999999999999999999988653
No 18
>PLN00182 putative aquaporin NIP4; Provisional
Probab=99.64 E-value=1e-15 Score=132.85 Aligned_cols=99 Identities=25% Similarity=0.325 Sum_probs=83.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHhC
Q 025865 14 LGSFKAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHGFALFVAVAVGANISGGHVNPAVTFGLALGG 93 (247)
Q Consensus 14 ~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSG~h~NPavTl~~~l~g 93 (247)
.+.++.++.|+++|++|++++++.....+. ... ..++++|+.+++.+++.+++||+|+|||+|++.++.+
T Consensus 156 ~s~~~a~~~E~l~TfiLv~~i~~~~~~~~~--------~~~--~~~l~iGl~V~~~~~~~g~~SGa~lNPARt~gpal~~ 225 (283)
T PLN00182 156 DSSGQALVAEIIISFLLMFVISGVATDSRA--------VGE--LAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVM 225 (283)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhheecccc--------CCc--chhHHHHHHHHHHHHHccccCccccChHHHHHHHHHh
Confidence 457899999999999999998875432111 011 2578999999999999999999999999999999986
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhc
Q 025865 94 QITILTGIFYWIAQLLGSIVASFLLKVVTG 123 (247)
Q Consensus 94 ~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~ 123 (247)
+ .|.+.|+||++|++|+++|+++++.+..
T Consensus 226 ~-~~~~~wvY~vap~lGA~lgally~~l~~ 254 (283)
T PLN00182 226 G-RYKGIWVYIVGPFVGIIAGGFVYNLIRF 254 (283)
T ss_pred c-cccceeHHHHHHHHHHHHHHHHHHHHhc
Confidence 5 6899999999999999999999988863
No 19
>PLN00183 putative aquaporin NIP7; Provisional
Probab=99.63 E-value=1.4e-15 Score=131.57 Aligned_cols=112 Identities=21% Similarity=0.311 Sum_probs=90.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHhCC
Q 025865 15 GSFKAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHGFALFVAVAVGANISGGHVNPAVTFGLALGGQ 94 (247)
Q Consensus 15 ~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSG~h~NPavTl~~~l~g~ 94 (247)
..++.++.|+++|+++++.+++....... ... ..++.+|+.+.+.++..+++||+|+|||+|++.++.+
T Consensus 159 ~~~~~~~~E~v~T~iLv~~i~~~~~~~~~--------~~~--~~~l~iGl~v~~~v~~~g~~TG~~~NPArtlgpai~~- 227 (274)
T PLN00183 159 GCSSAFWVEFIATFIVMFLAASLTSQPQS--------LGH--LSGFVIGIAIGLAVLITGPVSGGSMNPARSLGPAIVS- 227 (274)
T ss_pred cHHHHHHHHHHHHHHHHHhhheeeccccC--------CCC--ceehHHHHHHHHHHHhccCCCCCEeCHHHHHHHHHhC-
Confidence 46789999999999999998876532111 011 2357899999999999999999999999999999987
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCceeccCCCCc
Q 025865 95 ITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNVAAGVG 137 (247)
Q Consensus 95 ~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~ 137 (247)
.+|.+.|+||++|++|+++|+.+.+.+...........+|+.|
T Consensus 228 ~~~~~~wvy~vapilGailaa~l~~~l~~~~~~~~~~~~~~~~ 270 (274)
T PLN00183 228 WDFKDIWIYITAPTIGAVAGALMFHLLRLRTQPCSPNSSPNTS 270 (274)
T ss_pred CChhheehHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCchh
Confidence 4899999999999999999999999998655444444455544
No 20
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=99.62 E-value=1.8e-15 Score=128.37 Aligned_cols=100 Identities=23% Similarity=0.369 Sum_probs=84.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHh
Q 025865 13 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHGFALFVAVAVGANISGGHVNPAVTFGLALG 92 (247)
Q Consensus 13 ~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSG~h~NPavTl~~~l~ 92 (247)
+.+.+|.++.|+++|+++++.++......+. ..+....++.+|+.+...++..+++||+|+|||++++..+.
T Consensus 126 ~~~~~~~~~~E~v~T~~Lv~~i~~~~~~~~~--------~~~~~~~~~~iGl~v~~~~~~~g~~sG~~~NPAr~~g~~i~ 197 (228)
T cd00333 126 GVSNGNAFFVEFIGTFILVLVVFATTDDPNG--------PPPGGLAPLAIGLLVAAIGLAGGPITGASMNPARSLGPALF 197 (228)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHcccccc--------CCCCCcHHHHHHHHHHHHHHHhhcccccccCHhhchHHHHH
Confidence 4467899999999999999999876532111 01122467899999999999999999999999999999999
Q ss_pred CCC--CcchhHHHHHHHHHHHHHHHHHHHH
Q 025865 93 GQI--TILTGIFYWIAQLLGSIVASFLLKV 120 (247)
Q Consensus 93 g~~--~~~~~~~yi~aQ~~Ga~~g~~~~~~ 120 (247)
++. +|++.|+||++|++|+++|+.+.+.
T Consensus 198 ~~~~~~~~~~~vy~vap~lGai~aa~l~~~ 227 (228)
T cd00333 198 TGLARHWHYFWVYWVGPLIGAIAGALVYDY 227 (228)
T ss_pred hccccccceeehhhhHHHHHHHHHHHHHHh
Confidence 988 7999999999999999999988654
No 21
>PLN00167 aquaporin TIP5; Provisional
Probab=99.57 E-value=9.2e-15 Score=125.55 Aligned_cols=103 Identities=26% Similarity=0.415 Sum_probs=86.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhccCCCC--C--C--C--CChhHHHHHHHHHHHHHhhcCCCCCCcChhhhHHHHhc
Q 025865 135 GVGAIEGVVMEIIITFGLVYTVYATAADPKK--G--S--L--GTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVA 206 (247)
Q Consensus 135 ~~~~~~~~~~E~~~T~~l~~~i~~~~~~~~~--~--~--~--~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~~~ 206 (247)
..+..+.++.|+++|++|+++.+++..++++ . . . ....++.+|+++++.+++.+++||+|+|||+++++.+.
T Consensus 18 ~~~~~~~~laEflgTf~lv~~~~g~~~~~~~~~~~~~~~~~~~~~i~l~~Gl~v~~~i~~~g~iSGah~NPAvtl~~~~~ 97 (256)
T PLN00167 18 TRNALRSYLAEFISTFFFVFAAVGSAMSSRKLMPDAASDPSSLLIVAIANAFALSSAVYIAANISGGHVNPAVTFGMAVG 97 (256)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccCCCCcchHHHHHHHHHHHHHHHHhhcccccccCHHHHHHHHHh
Confidence 3456789999999999999999887543221 0 0 1 11578999999999999999999999999999999997
Q ss_pred cC-CCCceeeeeccccHHHHHHHHHHHHHhcC
Q 025865 207 SG-NFQDNWIYWVGPLIGGGLAGLIYGNVFMH 237 (247)
Q Consensus 207 ~~-~~~~~wvy~~~p~~Ga~~a~~~~~~~~~~ 237 (247)
++ .|++.|+||++|++|+++++.+++.++..
T Consensus 98 g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~ 129 (256)
T PLN00167 98 GHISVPTAMFYWISQMLASVMACLFLKVTTVG 129 (256)
T ss_pred CCCcHhhhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 65 68999999999999999999999887644
No 22
>PLN00166 aquaporin TIP2; Provisional
Probab=99.55 E-value=8.3e-15 Score=125.48 Aligned_cols=102 Identities=23% Similarity=0.364 Sum_probs=84.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhccC--CCC--CC--CCC--hhHHHHHHHHHHHHHhhcCCCCCCcChhhhHHHHhcc
Q 025865 136 VGAIEGVVMEIIITFGLVYTVYATAAD--PKK--GS--LGT--IAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAS 207 (247)
Q Consensus 136 ~~~~~~~~~E~~~T~~l~~~i~~~~~~--~~~--~~--~~~--~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~~~~ 207 (247)
.+..++++.|+++|++|+++.+++..+ +.+ +. ... ..++.+|+.+++.+++.++.||+|+||||++++++.+
T Consensus 15 ~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSGah~NPAvt~~~~l~g 94 (250)
T PLN00166 15 VASLKAYLSEFIATLLFVFAGVGSAIAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAIGG 94 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHhC
Confidence 466789999999999999999987443 111 11 112 3577899999999999999999999999999999975
Q ss_pred C-CCCceeeeeccccHHHHHHHHHHHHHhcC
Q 025865 208 G-NFQDNWIYWVGPLIGGGLAGLIYGNVFMH 237 (247)
Q Consensus 208 ~-~~~~~wvy~~~p~~Ga~~a~~~~~~~~~~ 237 (247)
+ +|.+.|+||++|++|+++++.+++.++.+
T Consensus 95 ~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~~ 125 (250)
T PLN00166 95 NITIITGFFYWIAQCLGSIVACLLLVFVTNG 125 (250)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4 68889999999999999999999988643
No 23
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=99.54 E-value=1.8e-14 Score=121.16 Aligned_cols=96 Identities=23% Similarity=0.360 Sum_probs=80.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHhC
Q 025865 14 LGSFKAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHGFALFVAVAVGANISGGHVNPAVTFGLALGG 93 (247)
Q Consensus 14 ~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSG~h~NPavTl~~~l~g 93 (247)
.+.+|.++.|+++|+++++..+.+....++.. . ....++.+|+.+...++..+++||+|+|||++++..+.+
T Consensus 119 ~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~~-------~-~~~~~~~iG~~v~~~~~~~g~~sG~~~NPAr~l~~~l~~ 190 (216)
T TIGR00861 119 VSSGQAFFVEFIGTAILVLVIFATTDPRNRVP-------R-GGFAPLAIGLLVFLIHLSMGPYTGTGMNPARSLGPALFA 190 (216)
T ss_pred ccHHHHHHHHHHHHHHHHHHHheeecCCCCCC-------C-CccHHHHHHHHHHHHHHhCCCCcccccCchhhhhHHHHh
Confidence 47789999999999999999887653211110 1 114688999999999999999999999999999999976
Q ss_pred -CCCcchhHHHHHHHHHHHHHHHHH
Q 025865 94 -QITILTGIFYWIAQLLGSIVASFL 117 (247)
Q Consensus 94 -~~~~~~~~~yi~aQ~~Ga~~g~~~ 117 (247)
+.+|.+.|+|+++|++|+++++.+
T Consensus 191 ~~~~~~~~~vy~vap~~Ga~~a~~~ 215 (216)
T TIGR00861 191 GLAGWGNHWVYWVGPIIGAILGALV 215 (216)
T ss_pred ccccccceeHHHHHHHHHHHHHHHh
Confidence 578999999999999999999865
No 24
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.52 E-value=1.1e-14 Score=123.12 Aligned_cols=109 Identities=23% Similarity=0.354 Sum_probs=92.2
Q ss_pred ccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCcccchH
Q 025865 5 FGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHGFALFVAVAVGANISGGHVNPA 84 (247)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSG~h~NPa 84 (247)
.+........+.+|.++.|++.||.|++..++...+.++. ...++.+|+++.+.+...+++||++||||
T Consensus 120 ~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~~-----------~~a~l~IG~~v~~~~l~~g~~TG~sMNPA 188 (238)
T KOG0223|consen 120 LGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDPRRS-----------ELAPLAIGFSVGLNILAAGPFTGASMNPA 188 (238)
T ss_pred cceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecCCCc-----------ccHHHHHHHHHHHHHHeecCcCcCccCcH
Confidence 3444555667789999999999999999987744322221 35789999999999999999999999999
Q ss_pred HHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 025865 85 VTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL 125 (247)
Q Consensus 85 vTl~~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~ 125 (247)
+|++.++..+ .|...|+||++|++|+++++++.+.++..+
T Consensus 189 rSfGpAvv~~-~w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~ 228 (238)
T KOG0223|consen 189 RSFGPAVVYG-SWDDHWIYWVGPLLGAILAALIYRLVFIPD 228 (238)
T ss_pred HHhhHHHHhc-CCCcEEEEEhhHHHHHHHHHHHHHHhccCc
Confidence 9999999987 499999999999999999999999887643
No 25
>PRK05420 aquaporin Z; Provisional
Probab=99.52 E-value=3e-14 Score=120.81 Aligned_cols=99 Identities=24% Similarity=0.265 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCCC--CCC-CCC-hhHHHHHHHHHHHHHhhcCCCCCCcChhhhHHHHhccC-CCCce
Q 025865 139 IEGVVMEIIITFGLVYTVYATAADPK--KGS-LGT-IAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASG-NFQDN 213 (247)
Q Consensus 139 ~~~~~~E~~~T~~l~~~i~~~~~~~~--~~~-~~~-~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~~~~~-~~~~~ 213 (247)
.|.++.|+++|++|+++.++.....+ +.. .+. ..++.+|+++.+.+++.++.||+|+|||+++++.+.+. +|++.
T Consensus 2 ~~~~laEfigT~~lv~~g~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSG~h~NPAvtl~~~~~~~i~~~~~ 81 (231)
T PRK05420 2 FKKLAAEFFGTFWLVFGGCGSAVLAAAFPELGIGFLGVALAFGLTVLTMAYAVGHISGGHFNPAVSVGLWAGGRFPAKEL 81 (231)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHhhcccCCCCCchHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHhCCCCHHHh
Confidence 47899999999999999887532211 111 111 24789999999999999999999999999999999865 79999
Q ss_pred eeeeccccHHHHHHHHHHHHHhcC
Q 025865 214 WIYWVGPLIGGGLAGLIYGNVFMH 237 (247)
Q Consensus 214 wvy~~~p~~Ga~~a~~~~~~~~~~ 237 (247)
|+||++|++|+++++.+.+.++.+
T Consensus 82 ~~Y~~aQ~lGa~~ga~l~~~~~~~ 105 (231)
T PRK05420 82 VPYIIAQVVGGIAAAAVLYLIASG 105 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999777766643
No 26
>PTZ00016 aquaglyceroporin; Provisional
Probab=99.51 E-value=2.1e-14 Score=125.65 Aligned_cols=102 Identities=24% Similarity=0.290 Sum_probs=84.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhccCCCCCC-CCC--hhHHHHHHHHHHHHHhhcCCCCCCcChhhhHHHHhccC-CCCc
Q 025865 137 GAIEGVVMEIIITFGLVYTVYATAADPKKGS-LGT--IAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASG-NFQD 212 (247)
Q Consensus 137 ~~~~~~~~E~~~T~~l~~~i~~~~~~~~~~~-~~~--~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~~~~~-~~~~ 212 (247)
+..+.+++|+++|++|+++.+++..+..... ... ..++.+|+++.+.+++.+++||+|+|||+++++++.++ +|.+
T Consensus 48 ~~~~~~laEfigT~llvf~g~g~~~~~~~~~~~~~~~~ial~~Glav~~~i~~~g~iSG~h~NPAVTla~~l~g~i~~~~ 127 (294)
T PTZ00016 48 PNVREYVAEFLGTFVLLFFGEGVVATTHTVGNNGDYLAITIGWGLGVTFGLLVSAGISGGHLNPAVTLGNAVFGKFPWKK 127 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcHHHHHHHHHHHHHHHHHhcccCcCccCHHHHHHHHHhccCCHHH
Confidence 4568999999999999999888643322111 111 35778899999999999999999999999999999877 7999
Q ss_pred eeeeeccccHHHHHHHHHHHHHhcCC
Q 025865 213 NWIYWVGPLIGGGLAGLIYGNVFMHS 238 (247)
Q Consensus 213 ~wvy~~~p~~Ga~~a~~~~~~~~~~~ 238 (247)
.|.||++|++|+++|+.+.+.++.+.
T Consensus 128 ~~~YiiaQ~lGa~~ga~ll~~~~~~~ 153 (294)
T PTZ00016 128 LPGYFVAQLLGAFVGAACVYGLYYGF 153 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999888877653
No 27
>PLN00027 aquaporin TIP; Provisional
Probab=99.51 E-value=3.5e-14 Score=121.95 Aligned_cols=100 Identities=23% Similarity=0.383 Sum_probs=82.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhcc------CCCCCCCCC--hhHHHHHHHHHHHHHhhcCCCCCCcChhhhHHHHhccC
Q 025865 137 GAIEGVVMEIIITFGLVYTVYATAA------DPKKGSLGT--IAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASG 208 (247)
Q Consensus 137 ~~~~~~~~E~~~T~~l~~~i~~~~~------~~~~~~~~~--~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~~~~~ 208 (247)
...+.++.|+++|++|+++.++... ++++..... ..++.+|+++.+.+++.++.||+|+||||++++.+.++
T Consensus 18 ~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~l~~~l~~Gl~v~~~i~~~~~iSGah~NPAvtl~~~~~g~ 97 (252)
T PLN00027 18 DALKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAAALAHAFALFVAVSVGANISGGHVNPAVTFGAFIGGN 97 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcchHHHHHHHHHHHHHHHHHHcccCccccChHHHHHHHHhCC
Confidence 4568899999999999999887631 111111112 46899999999999999999999999999999998655
Q ss_pred -CCCceeeeeccccHHHHHHHHHHHHHhc
Q 025865 209 -NFQDNWIYWVGPLIGGGLAGLIYGNVFM 236 (247)
Q Consensus 209 -~~~~~wvy~~~p~~Ga~~a~~~~~~~~~ 236 (247)
+|.+.|+||++|++|+++++.+++.+..
T Consensus 98 ~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~ 126 (252)
T PLN00027 98 ITLLRGILYWIAQLLGSVVACLLLKFSTG 126 (252)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6888999999999999999999987754
No 28
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.45 E-value=4.2e-14 Score=120.96 Aligned_cols=104 Identities=22% Similarity=0.296 Sum_probs=85.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhccCCCCC--CCC--ChhHHHHHHHHHHHHHhhcCCCCCCcChhhhHHHHhccC-CCC
Q 025865 137 GAIEGVVMEIIITFGLVYTVYATAADPKKG--SLG--TIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASG-NFQ 211 (247)
Q Consensus 137 ~~~~~~~~E~~~T~~l~~~i~~~~~~~~~~--~~~--~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~~~~~-~~~ 211 (247)
...|.+++||++|++|++..+++..+..-+ +.+ ....+.+|++++..++..+.+||+|+|||++++..+.++ .|+
T Consensus 30 ~l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g~~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a~~~~g~~p~~ 109 (316)
T KOG0224|consen 30 ELLREFLAEFLGTFVLVVFGLGSVAQAVLSGGTGGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLAMCILGRLPWK 109 (316)
T ss_pred HHHHHHHHHHHhHHHHHhhccceeEEEEeccCCCCceEEEEehHhHHHHHHHHhhccccccccCHHHHHHHHHhcCCChh
Confidence 567899999999999999888764322211 111 245789999999999999999999999999999999877 899
Q ss_pred ceeeeeccccHHHHHHHHHHHHHhcCCCC
Q 025865 212 DNWIYWVGPLIGGGLAGLIYGNVFMHSEH 240 (247)
Q Consensus 212 ~~wvy~~~p~~Ga~~a~~~~~~~~~~~~~ 240 (247)
++.+|.++|++||++++.....+|++...
T Consensus 110 k~p~Y~~aQ~iGAF~gaa~~y~~y~d~i~ 138 (316)
T KOG0224|consen 110 KFPVYVLAQFIGAFLGAATVYGLYYDAIN 138 (316)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999877776665443
No 29
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=99.43 E-value=1.1e-13 Score=116.85 Aligned_cols=107 Identities=21% Similarity=0.187 Sum_probs=87.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhcc----CCC-CCCCCC-hhHHHHHHHHHHHHHhhcCCCCCCcChhhhHHHHhccC-C
Q 025865 137 GAIEGVVMEIIITFGLVYTVYATAA----DPK-KGSLGT-IAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASG-N 209 (247)
Q Consensus 137 ~~~~~~~~E~~~T~~l~~~i~~~~~----~~~-~~~~~~-~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~~~~~~-~ 209 (247)
+..+.++.|+++|++|++...++.. .+. +...+. ...+.+|+.|.+.+++.+++||+|+|||++++.++.++ +
T Consensus 3 ~~~~~~~aEflGT~~Li~~G~G~~a~~~l~~~~~~~~~~~~i~~~wGl~V~~~iy~~g~iSGaHlNPAVTi~la~~g~fp 82 (241)
T COG0580 3 TLTKKLLAEFLGTFLLIFFGNGSVAAVALKGSKALGGGWLGIALAWGLGVLVAIYAFGGISGAHLNPAVTIALAVRGRFP 82 (241)
T ss_pred cHHHHHHHHHHHHHHHHHhhccHHHHHHhccccccccceeehhHHHHHHHHHHHHhccCcCccccChHHHHHHHHhCCCC
Confidence 3456789999999999998765432 111 111122 47889999999999999999999999999999999876 8
Q ss_pred CCceeeeeccccHHHHHHHHHHHHHhcCCCCCCC
Q 025865 210 FQDNWIYWVGPLIGGGLAGLIYGNVFMHSEHAPL 243 (247)
Q Consensus 210 ~~~~wvy~~~p~~Ga~~a~~~~~~~~~~~~~~~~ 243 (247)
|++...||++|++|+++++.+...++.++..+.+
T Consensus 83 ~~~v~~YivAQ~lGA~~ga~l~~~~~~~~~~~~~ 116 (241)
T COG0580 83 WRKVLPYIVAQVLGAFAGAALLYLLYYGKILETE 116 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhc
Confidence 9999999999999999999988888888776654
No 30
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=99.25 E-value=3.8e-11 Score=101.65 Aligned_cols=100 Identities=25% Similarity=0.368 Sum_probs=80.5
Q ss_pred CcCChhHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHH
Q 025865 10 DSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHGFALFVAVAVGANISGGHVNPAVTFGL 89 (247)
Q Consensus 10 ~~~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSG~h~NPavTl~~ 89 (247)
+..+.+.++.++.|+++|+++++.........++.. ... ..++.+|+.+....+..++.||+.+|||++++.
T Consensus 128 ~~~~~s~~~~~~~E~~~t~il~~~i~~~~~~~~~~~------~~~--~~p~~ig~~v~~~~~~~~~~tG~~~NPAr~~g~ 199 (227)
T PF00230_consen 128 PPPGISLGQAFFSEFIGTFILVLVILAVADDKRKFP------LGP--LAPLAIGLTVGALVLAGGPYTGASLNPARALGP 199 (227)
T ss_dssp STTTSSHHHHHHHHHHHHHHHHHHHHHHTSTTSSST------SSG--GHHHHHHHHHHHHHHHHHHHHST-SSHHHHHHH
T ss_pred ccccchhhhhhhhhhhhhhHHHhhhhhhcccccccc------ccc--ccceeEEEEEeecccccccccccccCchhhcCc
Confidence 445567799999999999999998876653322211 011 357888999999999999999999999999999
Q ss_pred HHhCCCCcchhHHHHHHHHHHHHHHHHHH
Q 025865 90 ALGGQITILTGIFYWIAQLLGSIVASFLL 118 (247)
Q Consensus 90 ~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~ 118 (247)
.+.... |...|+||++|++|+++|++++
T Consensus 200 ~l~~~~-~~~~wvy~~~P~~Ga~~a~~~Y 227 (227)
T PF00230_consen 200 ALFSGI-WDYFWVYWVGPFIGAILAALLY 227 (227)
T ss_dssp HHHHTH-HTTTTHHHHHHHHHHHHHHHHH
T ss_pred eeeccc-CCeEEEEEehHHHHHHHHHhhC
Confidence 888764 9999999999999999998763
No 31
>PRK11562 nitrite transporter NirC; Provisional
Probab=92.25 E-value=4.2 Score=35.39 Aligned_cols=177 Identities=14% Similarity=0.134 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcC-CCcccchHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc---CCCCce--
Q 025865 56 VAIAICHGFALFVAVAVGANI-SGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTG---GLAVPT-- 129 (247)
Q Consensus 56 ~~~~l~~g~~~~~~i~~~~~i-SG~h~NPavTl~~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~---~~~~~~-- 129 (247)
+..++.+++++.+.+..-+.. || |=....-..+.||.+|++.+--|.-=.+|-++|++++-++.. +...+.
T Consensus 59 li~g~~F~~GLilVi~~G~eLFTg---n~~~~~~~~~~~~~s~~~~lr~w~iv~~GNliGa~~~A~l~~~~~~~~~~~~~ 135 (268)
T PRK11562 59 LVMGATFGIALTLVIIAGSELFTG---HTMFLTFGVKAGTISHGQMWAILPQTWLGNLVGSVFVALLYSWGGGSLLPVDT 135 (268)
T ss_pred HHHHHHHHHHHHHHHHhCcccccc---chHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 344566666666666655443 33 333333456678899998888888888888888776655432 111100
Q ss_pred -e-----ccCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCChhHHHHHHHHHHHHHhhcCCCCCCcChhhhHHH
Q 025865 130 -H-----NVAAGVGAIEGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGP 203 (247)
Q Consensus 130 -~-----~~~~~~~~~~~~~~E~~~T~~l~~~i~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~lg~ 203 (247)
. .-..+.+..+.|+-=++|.++..+.+..... .+ ..+... .+-+-+++.+..+- .=...|=- -+..
T Consensus 136 ~~~~~ia~~K~~~~~~~~f~~gI~CNwLVclavw~~~~-~~--~~gKi~--~i~~pI~~Fv~~GF--EH~IANm~-~~~l 207 (268)
T PRK11562 136 SIVHSVALAKTTAPAMVLFFKGALCNWLVCLAIWMAIR-TE--GAAKFI--AIWWCLLAFIASGY--EHSVANMT-LFAL 207 (268)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHh-cc--ccchhH--HHHHHHHHHHHcCC--cchhHhHH-HHHH
Confidence 0 0011235667777777788777777765422 22 122222 22222333332222 11233421 2222
Q ss_pred HhccC-----CC----CceeeeeccccHHH-HHHHHHHHHHhcCCCCCCC
Q 025865 204 AVASG-----NF----QDNWIYWVGPLIGG-GLAGLIYGNVFMHSEHAPL 243 (247)
Q Consensus 204 ~~~~~-----~~----~~~wvy~~~p~~Ga-~~a~~~~~~~~~~~~~~~~ 243 (247)
.+... .| ++..+=.+|.++|+ ++-++.|.+.+.++.++++
T Consensus 208 ~~~~~~~~~~~~~~~~~nlipvtLGNivGG~v~vg~~y~~~~~~~~~~~~ 257 (268)
T PRK11562 208 SWFGHHSEAYTLAGIGHNLLWVTLGNTLSGAVFMGLGYWYATPKANRPVA 257 (268)
T ss_pred HHHccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCchh
Confidence 22211 11 12223467888888 5566778888766665543
No 32
>PRK10805 formate transporter; Provisional
Probab=87.84 E-value=18 Score=31.72 Aligned_cols=100 Identities=19% Similarity=0.325 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcC-CCcccchHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc--CCC---Cce
Q 025865 56 VAIAICHGFALFVAVAVGANI-SGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTG--GLA---VPT 129 (247)
Q Consensus 56 ~~~~l~~g~~~~~~i~~~~~i-SG~h~NPavTl~~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~--~~~---~~~ 129 (247)
+..++.+.+++.+.+..-+.. || |-..+.+ .+.||.++++..-.|.-=.+|-++|++++-++.. +.. .+.
T Consensus 69 ll~~~~F~vGlilIvl~g~eLFTg---n~l~~~~-~~~~~~~~~~~lr~w~iv~~GNliGal~~a~l~~~s~~~~~~~~~ 144 (285)
T PRK10805 69 LVGGICFSLGLILCVVCGADLFTS---TVLIVVA-KASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQ 144 (285)
T ss_pred HHHHHHHHHHHHHHHHhCcccchh---hHHHHHH-HHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCccH
Confidence 444666666666666655553 44 5555543 6788999999886666666666666655443321 100 000
Q ss_pred e-----c---cCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 025865 130 H-----N---VAAGVGAIEGVVMEIIITFGLVYTVYAT 159 (247)
Q Consensus 130 ~-----~---~~~~~~~~~~~~~E~~~T~~l~~~i~~~ 159 (247)
. . ...+.+..+.|+-=++|.++..+.+...
T Consensus 145 ~~~~~~~~a~~K~~~~~~~~f~~gI~CN~lVclaV~~~ 182 (285)
T PRK10805 145 WGLNVLQTADHKVHHTFIEAVCLGILANLMVCLAVWMS 182 (285)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0112466777777778888887777654
No 33
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism]
Probab=81.42 E-value=35 Score=29.62 Aligned_cols=180 Identities=17% Similarity=0.200 Sum_probs=92.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc--C---CCCc
Q 025865 54 GLVAIAICHGFALFVAVAVGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTG--G---LAVP 128 (247)
Q Consensus 54 ~~~~~~l~~g~~~~~~i~~~~~iSG~h~NPavTl~~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~--~---~~~~ 128 (247)
..+..++.+++++...++.-+..-=+ |-.........++++|++.+--|+-=.+|-++|++++.+++. + ...+
T Consensus 63 ~~lvg~~~F~~GLilVv~~g~ELfT~--n~m~~t~~~~~k~Is~~~ll~~w~~v~lgNliGa~~~a~l~~~~g~~~~~~~ 140 (265)
T COG2116 63 AKLVGGLVFSLGLILVVIAGSELFTS--NTMLLTVGVLSKKISWGQLLRNWLVVYLGNLIGALFVALLFHLSGFNLTANG 140 (265)
T ss_pred HHHHHHHHHHHHHHHhhhhCcccccc--chhHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence 44566777777777777665553211 322333345578999999888888888888888777655541 2 1111
Q ss_pred eec--------cCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCChhHHHHHHHHHHHHHhhcCCCCCCcChhhh
Q 025865 129 THN--------VAAGVGAIEGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARS 200 (247)
Q Consensus 129 ~~~--------~~~~~~~~~~~~~E~~~T~~l~~~i~~~~~~~~~~~~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPAr~ 200 (247)
... -.-+.+..+.|.--++|-++.++.+...-..|. .. -.-+.+-+-++.-+. ..+.=...|-..-
T Consensus 141 ~~~~~~~~~a~~K~~~t~~~~F~~GI~cN~lVclAvwm~~~~k~--~~--~K~~~m~~pv~~Fv~--~GfeH~VANm~~i 214 (265)
T COG2116 141 QWGLFVLGVAEHKLHHTFLEAFAKGILCNWLVCLAVWMSYSAKD--GA--AKIFAIILPVMLFVA--SGFEHSVANMFMI 214 (265)
T ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHhcccc--hh--hHHHHHHHHHHHHHH--cCCceeeehHHHH
Confidence 110 011335567777777777777777766522122 11 122233233333333 3223344553222
Q ss_pred HHHHhccC--CCCc-ee----eeeccccHHH-HHHHHHHHHHhcCCCCC
Q 025865 201 FGPAVASG--NFQD-NW----IYWVGPLIGG-GLAGLIYGNVFMHSEHA 241 (247)
Q Consensus 201 lg~~~~~~--~~~~-~w----vy~~~p~~Ga-~~a~~~~~~~~~~~~~~ 241 (247)
-..+...+ +|.+ .| .-.+|.++|+ ++-++.|+++++++.++
T Consensus 215 ~~~~~~~~~~~~~~fi~~Nlipv~lGNivGG~v~vgl~Y~~~~~~~~~~ 263 (265)
T COG2116 215 PWAAVFSGALTWADFILKNLIPVTLGNIVGGAVFVGLMYWYLYRKQNRY 263 (265)
T ss_pred HHHHHcCChhhhHHHHHHHHHHHHHhchhcchhhhhHHHHHhccccccc
Confidence 11222222 3443 22 2235666654 45567777776665544
No 34
>PRK09713 focB putative formate transporter; Provisional
Probab=74.22 E-value=60 Score=28.44 Aligned_cols=102 Identities=11% Similarity=0.096 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCC-----Cce
Q 025865 55 LVAIAICHGFALFVAVAVGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLA-----VPT 129 (247)
Q Consensus 55 ~~~~~l~~g~~~~~~i~~~~~iSG~h~NPavTl~~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~-----~~~ 129 (247)
-+..++.+.+++.+.+..-+..-=++. . ++.....|+.+|++..-.|.-=.+|-++|+++.-++..... ...
T Consensus 67 ~ll~g~~F~vGLilIv~~g~ELfTgN~--~-~~~~~~~~~i~~~~~l~~w~iv~~GNlvGal~~A~l~~~s~~~~~~~~~ 143 (282)
T PRK09713 67 HLVGGLCFTLGFILLAVCGTSLFTSSV--M-TVMAKSRGVISWRTWLINALLVACGNLAGIACFSLLIWFSGLVMSENAM 143 (282)
T ss_pred HHHHHHHHHHHHHHHHHhCccccHHHH--H-HHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchh
Confidence 344566667777766665555422221 2 22335688999988886655556666666555443321100 000
Q ss_pred e-----c---cCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 025865 130 H-----N---VAAGVGAIEGVVMEIIITFGLVYTVYAT 159 (247)
Q Consensus 130 ~-----~---~~~~~~~~~~~~~E~~~T~~l~~~i~~~ 159 (247)
. . ...+.+..+.|+--++|-++..+.+...
T Consensus 144 ~~~~~~~ia~~K~~~~~~~~F~~gI~CN~lVclaV~~~ 181 (282)
T PRK09713 144 WGVAVLHCAEGKMHHTFTESVSLGIMCNLMVCLALWMS 181 (282)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0113467788888888888888887754
No 35
>PF01226 Form_Nir_trans: Formate/nitrite transporter; InterPro: IPR000292 Proteins in this entry belong to the Formate-Nitrite Transporter (FNT) family (TC 2.A.44). The prokaryotic proteins of the FNT family probably function in the transport of the structurally related compounds, formate and nitrite. The homologous yeast protein may function as a short chain aliphatic carboxylate H+ symporter, transporting formate, acetate and propionate, and functioning primarily as an acetate uptake permease.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3Q7K_H 3KLY_E 3KLZ_A 3TDX_C 3TE2_B 3TDS_B 3TDR_E 3TDO_C 3TE1_B 3TDP_C ....
Probab=73.61 E-value=58 Score=27.93 Aligned_cols=142 Identities=15% Similarity=0.129 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHhC
Q 025865 14 LGSFKAYLAEFISTLLFVFAGVGSAIAFNKVTADAALDPSGLVAIAICHGFALFVAVAVGANISGGHVNPAVTFGLALGG 93 (247)
Q Consensus 14 ~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSG~h~NPavTl~~~l~g 93 (247)
.+..|-++.=+++-+++-+.............+ .+++..-+..++.+.+++...+..-+..-=+ |-.......+.|
T Consensus 18 ~~~~~~~~~~~lAG~~ig~g~~~~~~v~~~~~~--~~~g~~~l~~g~~F~~Gl~lIv~~g~eLfTg--n~~~~~~~~~~~ 93 (250)
T PF01226_consen 18 RPPSKLFLRGILAGAFIGFGALLSLVVAAGFGA--ENPGLAKLVGGLVFPIGLVLIVFLGGELFTG--NMMVMTLALLNK 93 (250)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTT--STHHHHHHHHHHHHTHHHHHHHHHT---TTT--TCHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc--CCccHHHHHHHHHHHHHHHHHHHhcchhccc--chHHHHHHHHcC
Confidence 334455555555555554444333322222211 1122233555777777777776665554212 555455566788
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCC----cee--------ccCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 025865 94 QITILTGIFYWIAQLLGSIVASFLLKVVTGGLAV----PTH--------NVAAGVGAIEGVVMEIIITFGLVYTVYAT 159 (247)
Q Consensus 94 ~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~----~~~--------~~~~~~~~~~~~~~E~~~T~~l~~~i~~~ 159 (247)
|.+|++.+--|.-=.+|-++|+++.-.+...... +.. ....+.+..+.|+-=+++.++..+.+...
T Consensus 94 ~~~~~~~l~~w~~v~~gNliG~~~~a~l~~~~~~~~~~~~~~~~~~~~a~~K~~~~~~~~f~~gI~cN~lVclav~~~ 171 (250)
T PF01226_consen 94 RISWKKLLRNWGIVYLGNLIGALLFAYLFAFSGGFMSSPAMGEYLISVAEHKVSHTFWELFFRGILCNWLVCLAVWLA 171 (250)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGTTTHHHHHHHHHHHCCSSS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888888888888888776655431100 000 01123467788888888888888888765
No 36
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=46.48 E-value=6.5 Score=29.63 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=16.2
Q ss_pred CCCcccchHHHHHHHHhCC
Q 025865 76 ISGGHVNPAVTFGLALGGQ 94 (247)
Q Consensus 76 iSG~h~NPavTl~~~l~g~ 94 (247)
=|+||+||.+.++..+..+
T Consensus 7 Gt~Ghv~P~lala~~L~~r 25 (139)
T PF03033_consen 7 GTRGHVYPFLALARALRRR 25 (139)
T ss_dssp SSHHHHHHHHHHHHHHHHT
T ss_pred CChhHHHHHHHHHHHHhcc
Confidence 3689999999999998754
No 37
>TIGR00790 fnt formate/nitrite transporter. symport. HCO2 - efflux may be driven by the membrane potential by a uniport mechanism or by H+ antiport.
Probab=41.32 E-value=2.2e+02 Score=24.11 Aligned_cols=102 Identities=17% Similarity=0.292 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhcC-CCcccchHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc--CC-CCce-
Q 025865 55 LVAIAICHGFALFVAVAVGANI-SGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTG--GL-AVPT- 129 (247)
Q Consensus 55 ~~~~~l~~g~~~~~~i~~~~~i-SG~h~NPavTl~~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~--~~-~~~~- 129 (247)
-+..++.+.+++.+.+..-+.. || |-.......+.||.+|++..-.|.-=.+|-++|+.+.-.+.. +. ..+.
T Consensus 43 ~~l~~~~F~~gl~~Iv~~g~eLfTg---n~~~~~~~~~~~~~~~~~~l~~w~~~~~gNlvG~~~~a~l~~~~~~~~~~~~ 119 (239)
T TIGR00790 43 KLVGGATFPIGLILVVIAGSDLFTG---NTLFVTMALLRGKISWGDLLINWVVSWLGNLVGALFVAYLFSYLGGILTANG 119 (239)
T ss_pred HHHHHHHHHHHHheeeeeCcccccc---chHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCcc
Confidence 3444556666655554433332 22 333333346688899999888888888888888776655432 11 0000
Q ss_pred -e--------ccCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 025865 130 -H--------NVAAGVGAIEGVVMEIIITFGLVYTVYAT 159 (247)
Q Consensus 130 -~--------~~~~~~~~~~~~~~E~~~T~~l~~~i~~~ 159 (247)
. ....+.+..+.++-=+++.++..+.+...
T Consensus 120 ~~~~~~~~~a~~K~~~~~~~~f~~gilcn~lV~lav~~~ 158 (239)
T TIGR00790 120 PWGVGSLAIAEHKAHHTFVEAFFLGILCNWLVCLAVWMS 158 (239)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01113466677777777777777776543
No 38
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=35.78 E-value=16 Score=32.78 Aligned_cols=20 Identities=30% Similarity=0.325 Sum_probs=17.0
Q ss_pred hcCCCcccchHHHHHHHHhC
Q 025865 74 ANISGGHVNPAVTFGLALGG 93 (247)
Q Consensus 74 ~~iSG~h~NPavTl~~~l~g 93 (247)
+.=||||+.||+.++-.+..
T Consensus 8 ~GGTGGHi~Pala~a~~l~~ 27 (352)
T PRK12446 8 GGGSAGHVTPNLAIIPYLKE 27 (352)
T ss_pred cCCcHHHHHHHHHHHHHHHh
Confidence 45589999999999988874
No 39
>COG3301 NrfD Formate-dependent nitrite reductase, membrane component [Inorganic ion transport and metabolism]
Probab=24.92 E-value=3.4e+02 Score=24.01 Aligned_cols=43 Identities=28% Similarity=0.468 Sum_probs=25.1
Q ss_pred CCCCcCh---hhhHHHHhccCCCCceeeeeccccHHHHHHHHHHHHHh
Q 025865 191 SGGSMNP---ARSFGPAVASGNFQDNWIYWVGPLIGGGLAGLIYGNVF 235 (247)
Q Consensus 191 sG~~lNP---Ar~lg~~~~~~~~~~~wvy~~~p~~Ga~~a~~~~~~~~ 235 (247)
.+.++|| +|++..++..+.| .|++|++-..=+++.-.+..+-.
T Consensus 223 ~l~~~G~~a~~~a~~~al~gg~~--a~~fwiGV~giGliiplll~~~~ 268 (305)
T COG3301 223 VLLSLGGVAAARALATALAGGFW--AWVFWIGVLGLGLIIPLLLKFGV 268 (305)
T ss_pred HHHHhCcHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHHHhhcc
Confidence 3445555 5778888877666 77777764433344444444333
No 40
>KOG3030 consensus Lipid phosphate phosphatase and related enzymes of the PAP2 family [Lipid transport and metabolism]
Probab=23.70 E-value=1.2e+02 Score=27.10 Aligned_cols=48 Identities=27% Similarity=0.541 Sum_probs=35.0
Q ss_pred CCCcChhhhHHHHhcc--------CCCCceee-eeccccHHHHHHHHHHHHHhcCCC
Q 025865 192 GGSMNPARSFGPAVAS--------GNFQDNWI-YWVGPLIGGGLAGLIYGNVFMHSE 239 (247)
Q Consensus 192 G~~lNPAr~lg~~~~~--------~~~~~~wv-y~~~p~~Ga~~a~~~~~~~~~~~~ 239 (247)
+-.+.|-..|++.... .|+++||. =+.|-++|+.+|...++.+.....
T Consensus 210 ~rllr~~l~f~~l~~A~~v~lSRV~DYkHHwsDV~aG~liG~~~A~~~~~~v~~~f~ 266 (317)
T KOG3030|consen 210 GRLLRPLLQFLPLMLALLVGLSRVSDYKHHWSDVLAGALIGAFVAYFLYRYVFPNFK 266 (317)
T ss_pred chhHHHHHHHHHHHHHHHHeeehhcccccccHHHHHHHHHHHHHHHHHHhhhcchhh
Confidence 4456787777775542 27889996 467888999999999888865444
No 41
>PRK11375 allantoin permease; Provisional
Probab=22.13 E-value=6.1e+02 Score=23.87 Aligned_cols=25 Identities=16% Similarity=0.040 Sum_probs=19.3
Q ss_pred eeccccHHHHHHHHHHHHHhcCCCC
Q 025865 216 YWVGPLIGGGLAGLIYGNVFMHSEH 240 (247)
Q Consensus 216 y~~~p~~Ga~~a~~~~~~~~~~~~~ 240 (247)
|..+.+.|-++++++|..+.+...+
T Consensus 450 ~~~~~~~g~iva~~~Y~~l~~~~~~ 474 (484)
T PRK11375 450 SRVSWFVGVIVAFVAYALLKKRTTA 474 (484)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhCCC
Confidence 5678889999999999888654333
No 42
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=21.51 E-value=2.6e+02 Score=25.88 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=25.7
Q ss_pred HHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHhc
Q 025865 88 GLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTG 123 (247)
Q Consensus 88 ~~~l~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~ 123 (247)
+.++.+|+++.+- .++..+++|+++.+.+....++
T Consensus 21 G~~l~kki~fl~k-~~IPepVvgG~i~ail~~~~~~ 55 (404)
T COG0786 21 GRFLVKKIKFLKK-YCIPEPVVGGLIFAILLLLLHG 55 (404)
T ss_pred HHHHHHHhHHHHH-ccCCcchHHHHHHHHHHHHHHh
Confidence 3455666666543 5788999999999998877765
No 43
>PF09163 Form-deh_trans: Formate dehydrogenase N, transmembrane; InterPro: IPR015246 The transmembrane domain of the beta subunit of formate dehydrogenase consists of a single transmembrane helix. This domain acts as a transmembrane anchor, allowing the conduction of electrons within the protein []. ; PDB: 1KQG_B 1KQF_B.
Probab=20.59 E-value=1.4e+02 Score=18.38 Aligned_cols=24 Identities=8% Similarity=-0.108 Sum_probs=10.5
Q ss_pred cHHHHHHHHHHHHHhcCCCCCCCC
Q 025865 221 LIGGGLAGLIYGNVFMHSEHAPLS 244 (247)
Q Consensus 221 ~~Ga~~a~~~~~~~~~~~~~~~~~ 244 (247)
+.++++++++......|+..+.++
T Consensus 20 ~~~~~~~~~~Hyi~vGPn~v~ee~ 43 (44)
T PF09163_consen 20 MGATAAAGFFHYITVGPNRVEEED 43 (44)
T ss_dssp HHHHHHHHHHHHHHH--B-S-SST
T ss_pred HHHHHHHHHHHHhhcCCCCCCcCC
Confidence 445555555555555555555444
No 44
>PRK09979 putative rho operon leader peptide; Provisional
Probab=20.44 E-value=35 Score=18.87 Aligned_cols=17 Identities=41% Similarity=0.671 Sum_probs=12.9
Q ss_pred CCCCCCcChhhhHHHHh
Q 025865 189 PFSGGSMNPARSFGPAV 205 (247)
Q Consensus 189 ~~sG~~lNPAr~lg~~~ 205 (247)
.++|.++||.-.|+.+.
T Consensus 5 qisgsslnpscrfssay 21 (33)
T PRK09979 5 QISGSSLNPSCRFSSAY 21 (33)
T ss_pred cccCCcCCccccccccc
Confidence 35899999987776554
Done!