BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025866
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XIO|A Chain A, Structure Of Putative Deoxyribonuclease Tatdn1 Isoform A
Length = 301
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 94/215 (43%), Gaps = 37/215 (17%)
Query: 31 AAAVGEIGLDKGSKGREIDFM---DQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMK 87
A+GE GLD + F Q+ F +Q EL+++ K P +HC + + L+I K
Sbjct: 104 VVAIGECGLDFD----RLQFCPKDTQLKYFEKQFELSEQTKLPMFLHCRNSHAEFLDITK 159
Query: 88 SVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKA-----QKVPSERILLETD 142
G ++HS+ G+ E L L Y F+G + +A + +PSE++++ETD
Sbjct: 160 RNRDRCVGGVVHSFDGTKEAAAALIDLDLYIGFNGCSLKTEANLEVLKSIPSEKLMIETD 219
Query: 143 AP-DALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLN 201
AP + S ++ P+ + S H KD N
Sbjct: 220 APWCGVKSTHAGSKYIRTAFPTKKKWESG----------------HCLKDR--------N 255
Query: 202 HPANIHNVLDYVASLLDMTKEELAELSYRNAIRLF 236
P +I +L+ ++++ D ELA Y N I++F
Sbjct: 256 EPCHIIQILEIMSAVRDEDPLELANTLYNNTIKVF 290
>pdb|1YIX|A Chain A, Crystal Structure Of Ycfh, Tatd Homolog From Escherichia
Coli K12, At 1.9 A Resolution
pdb|1YIX|B Chain B, Crystal Structure Of Ycfh, Tatd Homolog From Escherichia
Coli K12, At 1.9 A Resolution
Length = 265
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 92/222 (41%), Gaps = 62/222 (27%)
Query: 33 AVGEIGLDK----GSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKS 88
A+GE GLD +K R Q F +++ +EL +P +H A D L I++
Sbjct: 91 ALGETGLDYYYTPETKVR------QQESFIHHIQIGRELNKPVIVHTRDARADTLAILRE 144
Query: 89 VGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQK-------VPSERILLET 141
G ++H + E +L LG Y SFSG + A++ VP +R+L+ET
Sbjct: 145 EKVTDCGGVLHCFTEDRETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVET 204
Query: 142 DAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLN 201
D+P P P+ G KE N
Sbjct: 205 DSPYLAP--------------------------VPHRG-----------------KE--N 219
Query: 202 HPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEGSKI 243
PA + +V +Y+A L + EELA+++ N RLF + S++
Sbjct: 220 QPAMVRDVAEYMAVLKGVAVEELAQVTTDNFARLFHIDASRL 261
>pdb|2GZX|A Chain A, Crystal Structure Of The Tatd Deoxyribonuclease Mw0446
From Staphylococcus Aureus. Northeast Structural
Genomics Consortium Target Zr237.
pdb|2GZX|B Chain B, Crystal Structure Of The Tatd Deoxyribonuclease Mw0446
From Staphylococcus Aureus. Northeast Structural
Genomics Consortium Target Zr237
Length = 265
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 91/228 (39%), Gaps = 58/228 (25%)
Query: 18 WFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVR 77
W +L + ++ +GE GLD D Q VFR+Q+ LAK LK P IH
Sbjct: 77 WIESLAQHPKVI---GIGEXGLDYHWDKSPADV--QKEVFRKQIALAKRLKLPIIIHNRE 131
Query: 78 AFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELS-KLGAYFSFSGFLMSMKAQK----- 131
A D ++I+ G I HS+ GS E+ ++ KL Y S G + A++
Sbjct: 132 ATQDCIDILLEEHAEEVGGIXHSFSGSPEIADIVTNKLNFYISLGGPVTFKNAKQPKEVA 191
Query: 132 --VPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHAS 189
V ER+L+ETDAP P P G
Sbjct: 192 KHVSXERLLVETDAPYLSP--------------------------HPYRGKR-------- 217
Query: 190 KDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFS 237
N PA + V + +A L ++ EE+ E + +NA +LF+
Sbjct: 218 -----------NEPARVTLVAEQIAELKGLSYEEVCEQTTKNAEKLFN 254
>pdb|1XWY|A Chain A, Crystal Structure Of Tatd Deoxyribonuclease From
Escherichia Coli K12 At 2.0 A Resolution
Length = 264
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 16/128 (12%)
Query: 33 AVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPF 92
A+GE GLD + +Q F QL +A +L P +HC A + +++ P+
Sbjct: 92 AIGECGLDFNRNFSTPE--EQERAFVAQLRIAADLNMPVFMHCRDAHERFMTLLE---PW 146
Query: 93 PD---GVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQK--------VPSERILLET 141
D G ++H + G+ E + G Y +G++ + +P+E++L+ET
Sbjct: 147 LDKLPGAVLHCFTGTREEMQACVAHGIYIGITGWVCDERRGLELRELLPLIPAEKLLIET 206
Query: 142 DAPDALPK 149
DAP LP+
Sbjct: 207 DAPYLLPR 214
>pdb|1ZZM|A Chain A, Crystal Structure Of Yjjv, Tatd Homolog From Escherichia
Coli K12, At 1.8 A Resolution
Length = 259
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 70/155 (45%), Gaps = 19/155 (12%)
Query: 22 LKEFFEITPA--AAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAF 79
L++ E PA AVGEIGLD G + F Q + +QL+LAK P +H R
Sbjct: 81 LQQALERRPAKVVAVGEIGLD--LFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTH 138
Query: 80 GDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQK-------V 132
L +K P ++H + GS + +LG G + +A K +
Sbjct: 139 DKLAMHLKR-HDLPRTGVVHGFSGSLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKL 197
Query: 133 PSERILLETDAPDALPKAELNSLFLVDGDPSLPQE 167
P +LLETDAPD +P LN G P+ P++
Sbjct: 198 PLASLLLETDAPD-MP---LNGF---QGQPNRPEQ 225
>pdb|2Y1H|A Chain A, Crystal Structure Of The Human Tatd-Domain Protein 3
(Tatdn3)
pdb|2Y1H|B Chain B, Crystal Structure Of The Human Tatd-Domain Protein 3
(Tatdn3)
Length = 272
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 88/211 (41%), Gaps = 56/211 (26%)
Query: 33 AVGEIGLDKGSK--GREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVG 90
A+GE+GLD + G +Q V +Q++LAK L P ++H A + +++ G
Sbjct: 102 AIGEVGLDFSPRFAGTGEQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQG 161
Query: 91 PFPDGVIIHSYLGSAEMVPELSKLGAYFSF-SGFLMSMKAQK----VPSERILLETDAPD 145
+ V++H++ G + E + G +FS + S + QK +P I LETD+P
Sbjct: 162 --AEKVLLHAFDGRPSVAMEGVRAGYFFSIPPSIIRSGQKQKLVKQLPLTSICLETDSPA 219
Query: 146 ALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPAN 205
P+ K+ N P N
Sbjct: 220 LGPE-----------------------------------------------KQVRNEPWN 232
Query: 206 IHNVLDYVASLLDMTKEELAELSYRNAIRLF 236
I +Y+A + ++ EE+ E++ +NA++LF
Sbjct: 233 ISISAEYIAQVKGISVEEVIEVTTQNALKLF 263
>pdb|3GG7|A Chain A, Crystal Structure Of An Uncharacterized Metalloprotein
From Deinococcus Radiodurans
Length = 254
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 20/147 (13%)
Query: 34 VGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELK-RPASIHCVRAFGDLLEIMKSVGPF 92
VGE+GLD GS + Q VF+ L ++ R SIH RA ++L +++ P
Sbjct: 84 VGEVGLD-GSPSLRGTWTQQFAVFQHILRRCEDHGGRILSIHSRRAESEVLNCLEA-NPR 141
Query: 93 PDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKA-----QKVPSERILLETDAPDAL 147
I+H Y GS + LG +FS ++ + + +P +R+L ETD P
Sbjct: 142 SGTPILHWYSGSVTELRRAISLGCWFSVGPTMVRTQKGAALIRSMPRDRVLTETDGP--- 198
Query: 148 PKAELNSLFL-VDGDPSLPQELSAKEE 173
FL +DG +LP ++ + E
Sbjct: 199 --------FLELDGQAALPWDVKSVVE 217
>pdb|3RCM|A Chain A, Crystal Structure Of Efi Target 500140:tatd Family
Hydrolase From Pseudomonas Putida
Length = 287
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 55/129 (42%), Gaps = 16/129 (12%)
Query: 33 AVGEIGLDKGSKGREIDFMD---QVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSV 89
AVGE GLD DF Q QL LA +L+ P +H A LL I+K
Sbjct: 94 AVGECGLDFNR-----DFSPRPLQEKALEAQLTLAAQLRLPVFLHERDASERLLAILKDY 148
Query: 90 GPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMK--------AQKVPSERILLET 141
G ++H + G E + L + +G++ + +P R+ LE+
Sbjct: 149 RDHLTGAVVHCFTGEREALFAYLDLDLHIGITGWICDERRGTHLHPLVGNIPEGRLXLES 208
Query: 142 DAPDALPKA 150
DAP LP++
Sbjct: 209 DAPYLLPRS 217
>pdb|1J6O|A Chain A, Crystal Structure Of Tatd-related Deoxyribonuclease
(tm0667) From Thermotoga Maritima At 1.8 A Resolution
Length = 268
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 13/142 (9%)
Query: 12 QERTPNWFSTLKEFFEITPAAAVGEIGLD--KGSKGREIDFMDQVGVFRQQLELAKELKR 69
+E ++ L++F + A+GE GLD + E+ Q VF +Q+ELA +L
Sbjct: 79 KEVPEDFIEHLEKFAKDEKVVAIGETGLDFFRNISPAEV----QKRVFVEQIELAGKLNL 134
Query: 70 PASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMK- 128
P +H A+ + EI+++ +IH++ E + LG G + K
Sbjct: 135 PLVVHIRDAYSEAYEILRTESLPEKRGVIHAFSSDYEWAKKFIDLGFLLGIGGPVTYPKN 194
Query: 129 ------AQKVPSERILLETDAP 144
++V E I+LETD P
Sbjct: 195 EALREVVKRVGLEYIVLETDCP 216
>pdb|3IPW|A Chain A, Crystal Structure Of Hydrolase Tatd Family Protein From
Entamoeba Histolytica
Length = 325
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 17/128 (13%)
Query: 28 ITPAAAVGEIGLDKGSKGREIDFMD---QVGVFRQQLELAKELKR-PASIHCVRAFGDLL 83
I A+GEIGLD + F D Q+ +R L ++ P HC +++ DL
Sbjct: 128 IDKVVAIGEIGLDY----ERLQFSDKETQLSGYRTLSILHQKYPYLPFFFHCRKSWSDLC 183
Query: 84 EIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSG-------FLMSMKAQKVPSER 136
++ K +G ++H + G+ E + ++ G +G L MK ++P ER
Sbjct: 184 QLNKELGYNGCKGVVHCFDGTEEEMNQILNEGWDIGVTGNSLQSIELLNVMK--QIPIER 241
Query: 137 ILLETDAP 144
+ +ETD P
Sbjct: 242 LHIETDCP 249
>pdb|3E2V|A Chain A, Crystal Structure Of An Uncharacterized Amidohydrolase
From Saccharomyces Cerevisiae
pdb|3E2V|B Chain B, Crystal Structure Of An Uncharacterized Amidohydrolase
From Saccharomyces Cerevisiae
Length = 401
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 106/262 (40%), Gaps = 54/262 (20%)
Query: 22 LKEFFEI---------TPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELA----KELK 68
LKE +++ T ++GEIGLD M +V F +QL+++ K
Sbjct: 138 LKELYDLMNQQAKPHDTSFRSIGEIGLDYDRFHYSSKEMQKV-FFEEQLKISCLNDKLSS 196
Query: 69 RPASIHCVRAFGDLLEIMK----------------------SVGPF---PD-GVIIHSYL 102
P +H A D ++I++ S G + PD +++HS+
Sbjct: 197 YPLFLHMRSACDDFVQILERFVVGFTDEKDTFQLQKLGASSSSGFYKFHPDRKLVVHSFT 256
Query: 103 GSAEMVPELSKL--GAYFSFSGFLMSMK-----AQKVPSERILLETDAPDALPKAELNSL 155
GSA + +L L + +G + + +++P+ER+LLETDAP K S
Sbjct: 257 GSAIDLQKLLNLSPNIFIGVNGCSLRTEENLAVVKQIPTERLLLETDAPWCEIKRTHASF 316
Query: 156 FLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPK-ETLNHPANIHNVLDYVA 214
L + ++ P S N+ ++ L + N P N+ V V+
Sbjct: 317 ------QYLAKYQEVRDFEYPAFKSVKKNKLADKLNAEELYMVKGRNEPCNMEQVAIVVS 370
Query: 215 SLLDMTKEELAELSYRNAIRLF 236
+ D+ L + +++ ++F
Sbjct: 371 EVKDVDLATLIDTTWKTTCKIF 392
>pdb|3GUW|A Chain A, Crystal Structure Of The Tatd-Like Protein (Af1765) From
Archaeoglobus Fulgidus, Northeast Structural Genomics
Consortium Target Gr121
pdb|3GUW|B Chain B, Crystal Structure Of The Tatd-Like Protein (Af1765) From
Archaeoglobus Fulgidus, Northeast Structural Genomics
Consortium Target Gr121
pdb|3GUW|C Chain C, Crystal Structure Of The Tatd-Like Protein (Af1765) From
Archaeoglobus Fulgidus, Northeast Structural Genomics
Consortium Target Gr121
pdb|3GUW|D Chain D, Crystal Structure Of The Tatd-Like Protein (Af1765) From
Archaeoglobus Fulgidus, Northeast Structural Genomics
Consortium Target Gr121
Length = 261
Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 52/122 (42%), Gaps = 17/122 (13%)
Query: 32 AAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVR-----AFGDLLEIM 86
A GEIGL E+ +++ V + QLELAK P IH R A LEI+
Sbjct: 94 VAFGEIGL-------ELVTDEEIEVLKSQLELAKRXDVPCIIHTPRGNKLKATRKTLEIL 146
Query: 87 KSVG-PFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKVPS----ERILLET 141
+S+ P VI H + + V E G L + A ++ + ER L +
Sbjct: 147 ESLDFPADLAVIDHVNFETLDXVLETEYWIGLTVQPGKLSAEDAARIVAEHGPERFXLNS 206
Query: 142 DA 143
DA
Sbjct: 207 DA 208
>pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis
Hb8
pdb|2GS9|B Chain B, Crystal Structure Of Tt1324 From Thermus Thermophilis
Hb8
Length = 211
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 28 ITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMK 87
+ P ++ E+G G R + + +VGV + LA +R VRA+G+ L
Sbjct: 34 LPPGESLLEVGAGTGYWLRRLPYPQKVGVEPSEAXLAVGRRRAPEATWVRAWGEAL---- 89
Query: 88 SVGPFP 93
PFP
Sbjct: 90 ---PFP 92
>pdb|3CJW|A Chain A, Crystal Structure Of The Human Coup-Tfii Ligand Binding
Domain
Length = 244
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 26 FEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELK-RPASIHCVRAF 79
+ P A + S R + FMD + +F++Q+E K L A C++A
Sbjct: 94 LHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAI 148
>pdb|1QMR|A Chain A, Birch Pollen Allergen Bet V 1 Mutant N28t, K32q, E45s,
P108g
Length = 159
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 140 ETDAPDALPKAELNSLFLVDGD---PSL-PQELSAKEEHSPNVGSAS 182
ET+ +P A L F++DGD P + PQ +S+ E S N G +
Sbjct: 6 ETETTSVIPAARLFKAFILDGDTLFPQVAPQAISSVENISGNGGPGT 52
>pdb|1LLT|A Chain A, Birch Pollen Allergen Bet V 1 Mutant E45s
Length = 159
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 140 ETDAPDALPKAELNSLFLVDGD---PSL-PQELSAKEEHSPNVGSAS 182
ET+ +P A L F++DGD P + PQ +S+ E S N G +
Sbjct: 6 ETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENISGNGGPGT 52
>pdb|4A8U|A Chain A, Crystal Structure Of Native Birch Pollen Allergen Bet V 1
Isoform J
pdb|4A8V|A Chain A, Crystal Structure Of Birch Pollen Allergen Bet V 1 Isoform
J In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans)
Length = 159
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 140 ETDAPDALPKAELNSLFLVDGD---PSL-PQELSAKEEHSPNVGSAS 182
ET+A +P A L F++DGD P + PQ +S+ E N G +
Sbjct: 6 ETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGT 52
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,296,367
Number of Sequences: 62578
Number of extensions: 297153
Number of successful extensions: 677
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 653
Number of HSP's gapped (non-prelim): 26
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)