Query 025866
Match_columns 247
No_of_seqs 135 out of 1212
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 10:24:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025866.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025866hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0084 TatD Mg-dependent DNas 100.0 7.6E-55 1.6E-59 388.8 21.0 190 2-238 59-256 (256)
2 PRK10425 DNase TatD; Provision 100.0 1.1E-51 2.5E-56 369.2 21.2 193 3-238 58-258 (258)
3 PRK11449 putative deoxyribonuc 100.0 2.3E-50 4.9E-55 360.7 21.3 188 3-238 62-258 (258)
4 PF01026 TatD_DNase: TatD rela 100.0 1E-50 2.2E-55 360.9 17.2 190 2-237 57-255 (255)
5 PRK10812 putative DNAse; Provi 100.0 5.5E-50 1.2E-54 359.5 21.3 193 3-244 63-262 (265)
6 KOG3020 TatD-related DNase [Re 100.0 8.7E-46 1.9E-50 334.3 17.2 206 3-238 76-296 (296)
7 TIGR00010 hydrolase, TatD fami 100.0 4.4E-35 9.5E-40 255.9 20.5 188 3-238 58-252 (252)
8 cd01310 TatD_DNAse TatD like p 100.0 2.6E-34 5.7E-39 250.4 20.7 188 2-237 57-251 (251)
9 cd00530 PTE Phosphotriesterase 100.0 6.5E-30 1.4E-34 229.8 16.5 183 3-236 78-293 (293)
10 COG1099 Predicted metal-depend 99.9 3E-26 6.5E-31 198.7 16.9 173 3-239 69-254 (254)
11 COG1831 Predicted metal-depend 99.8 4E-19 8.7E-24 157.8 12.0 185 3-239 81-283 (285)
12 TIGR03583 EF_0837 probable ami 99.7 8.4E-18 1.8E-22 156.1 12.3 171 4-239 116-313 (365)
13 PRK09875 putative hydrolase; P 99.3 1.2E-10 2.6E-15 106.4 19.3 181 6-237 88-292 (292)
14 cd01295 AdeC Adenine deaminase 99.3 4.8E-11 1E-15 113.5 16.2 157 18-239 91-255 (422)
15 cd01307 Met_dep_hydrolase_B Me 99.3 1.8E-11 3.8E-16 112.8 12.5 132 57-239 151-297 (338)
16 PRK09237 dihydroorotase; Provi 99.0 3.4E-09 7.5E-14 99.0 12.6 161 17-239 134-316 (380)
17 cd01292 metallo-dependent_hydr 98.7 2.5E-07 5.4E-12 79.6 11.6 95 52-146 130-238 (275)
18 PF02126 PTE: Phosphotriestera 98.5 1.4E-06 2.9E-11 80.4 10.6 154 33-237 126-308 (308)
19 PF04909 Amidohydro_2: Amidohy 98.4 5.2E-06 1.1E-10 72.4 11.7 125 15-147 83-237 (273)
20 COG1735 Php Predicted metal-de 98.2 4.2E-05 9.1E-10 70.1 13.9 186 5-238 101-314 (316)
21 COG2159 Predicted metal-depend 98.0 0.00057 1.2E-08 62.5 16.7 157 16-240 112-292 (293)
22 TIGR01430 aden_deam adenosine 97.5 0.0071 1.5E-07 55.5 16.2 126 54-237 171-312 (324)
23 TIGR01975 isoAsp_dipep isoaspa 97.3 0.0036 7.8E-08 59.5 12.4 163 28-239 149-344 (389)
24 cd01312 Met_dep_hydrolase_D Me 97.3 0.014 3E-07 55.1 15.6 74 50-123 158-261 (381)
25 PRK09228 guanine deaminase; Pr 97.2 0.018 3.8E-07 55.2 16.0 71 54-124 210-295 (433)
26 TIGR02967 guan_deamin guanine 97.2 0.02 4.4E-07 53.8 16.0 70 54-123 185-269 (401)
27 PRK10657 isoaspartyl dipeptida 97.2 0.014 3E-07 54.5 14.7 169 30-239 151-343 (388)
28 PRK07213 chlorohydrolase; Prov 97.1 0.021 4.5E-07 53.6 14.7 130 54-239 178-326 (375)
29 TIGR01178 ade adenine deaminas 97.0 0.012 2.6E-07 58.5 12.8 157 18-240 132-297 (552)
30 PRK12394 putative metallo-depe 96.9 0.032 6.9E-07 52.3 14.7 133 54-239 172-321 (379)
31 PRK09358 adenosine deaminase; 96.9 0.063 1.4E-06 49.6 16.0 66 55-123 182-251 (340)
32 cd01293 Bact_CD Bacterial cyto 96.9 0.043 9.3E-07 50.7 14.8 98 19-124 161-272 (398)
33 cd01320 ADA Adenosine deaminas 96.8 0.13 2.9E-06 46.9 17.4 67 54-123 172-242 (325)
34 PRK06687 chlorohydrolase; Vali 96.7 0.087 1.9E-06 49.9 15.6 70 54-123 195-276 (419)
35 PRK08204 hypothetical protein; 96.6 0.058 1.3E-06 51.4 14.0 69 55-123 201-274 (449)
36 PRK08203 hydroxydechloroatrazi 96.6 0.46 1E-05 45.5 20.1 70 54-123 213-294 (451)
37 PRK09045 N-ethylammeline chlor 96.6 0.1 2.2E-06 49.9 15.5 70 54-123 201-282 (443)
38 cd01311 PDC_hydrolase 2-pyrone 96.5 0.032 6.9E-07 49.7 11.0 89 55-147 110-225 (263)
39 PRK06038 N-ethylammeline chlor 96.5 0.089 1.9E-06 50.2 14.3 70 55-124 190-271 (430)
40 cd01298 ATZ_TRZ_like TRZ/ATZ f 96.4 0.075 1.6E-06 49.4 13.3 70 54-123 193-274 (411)
41 cd01309 Met_dep_hydrolase_C Me 96.4 0.054 1.2E-06 50.6 12.3 113 69-240 193-321 (359)
42 cd01297 D-aminoacylase D-amino 96.3 0.32 6.9E-06 46.2 17.3 168 15-239 162-355 (415)
43 cd01296 Imidazolone-5PH Imidaz 96.2 0.12 2.6E-06 47.8 13.5 130 54-240 192-331 (371)
44 PRK07228 N-ethylammeline chlor 96.2 0.28 6.1E-06 46.8 16.3 70 54-123 198-279 (445)
45 PRK06151 N-ethylammeline chlor 96.2 0.055 1.2E-06 52.6 11.6 70 54-123 220-310 (488)
46 cd01303 GDEase Guanine deamina 96.2 0.27 5.8E-06 47.0 16.0 69 55-123 208-291 (429)
47 PRK08393 N-ethylammeline chlor 96.2 0.17 3.8E-06 48.1 14.6 70 54-123 188-269 (424)
48 PRK06380 metal-dependent hydro 96.2 0.21 4.5E-06 47.3 15.0 70 55-124 186-267 (418)
49 PRK07583 cytosine deaminase-li 96.1 0.33 7.1E-06 46.5 16.3 69 55-123 212-294 (438)
50 PRK07572 cytosine deaminase; V 96.1 0.32 6.9E-06 46.4 16.0 98 19-123 162-273 (426)
51 PRK15493 5-methylthioadenosine 96.1 0.22 4.7E-06 47.8 14.9 70 55-124 197-278 (435)
52 cd01305 archeal_chlorohydrolas 96.1 0.099 2.2E-06 46.3 11.6 64 57-123 127-194 (263)
53 cd01299 Met_dep_hydrolase_A Me 95.9 0.31 6.7E-06 44.4 14.2 65 54-123 159-223 (342)
54 PRK12393 amidohydrolase; Provi 95.9 0.55 1.2E-05 45.3 16.5 70 55-124 218-299 (457)
55 COG3964 Predicted amidohydrola 95.8 0.083 1.8E-06 49.0 10.1 126 57-239 174-320 (386)
56 cd01313 Met_dep_hydrolase_E Me 95.8 0.68 1.5E-05 44.1 16.7 69 55-124 207-287 (418)
57 cd01300 YtcJ_like YtcJ_like me 95.7 0.098 2.1E-06 50.4 10.8 70 54-123 294-370 (479)
58 PLN02942 dihydropyrimidinase 95.6 0.8 1.7E-05 44.6 16.5 96 18-122 136-266 (486)
59 PRK08418 chlorohydrolase; Prov 95.5 0.59 1.3E-05 44.5 15.1 90 54-144 189-313 (408)
60 TIGR01224 hutI imidazoloneprop 95.5 0.19 4.1E-06 46.6 11.4 130 55-240 197-335 (377)
61 PRK09356 imidazolonepropionase 95.4 0.39 8.4E-06 45.1 13.3 130 55-240 222-361 (406)
62 cd01308 Isoaspartyl-dipeptidas 95.2 1.3 2.8E-05 41.3 16.2 166 32-239 151-342 (387)
63 PF07969 Amidohydro_3: Amidohy 95.2 0.47 1E-05 44.1 13.1 64 57-122 227-292 (404)
64 PRK07203 putative chlorohydrol 95.1 0.12 2.7E-06 49.3 9.2 70 55-124 205-286 (442)
65 COG2355 Zn-dependent dipeptida 95.1 0.39 8.5E-06 44.6 11.8 132 58-237 152-308 (313)
66 PRK06886 hypothetical protein; 94.7 1.5 3.1E-05 41.0 14.7 97 20-123 134-244 (329)
67 PTZ00124 adenosine deaminase; 94.6 3.9 8.6E-05 38.6 17.5 120 56-236 207-348 (362)
68 PRK09229 N-formimino-L-glutama 94.5 1.9 4.1E-05 41.4 15.5 68 55-123 216-295 (456)
69 PRK06846 putative deaminase; V 94.4 2.7 5.8E-05 39.8 16.1 93 53-145 204-314 (410)
70 cd01304 FMDH_A Formylmethanofu 94.4 1.7 3.8E-05 43.2 15.1 64 53-116 207-295 (541)
71 TIGR03314 Se_ssnA putative sel 93.8 0.37 8E-06 46.2 9.2 70 55-124 204-285 (441)
72 cd01294 DHOase Dihydroorotase 93.8 0.82 1.8E-05 42.1 11.1 35 205-241 266-300 (335)
73 PRK10027 cryptic adenine deami 93.8 1.9 4E-05 43.5 14.3 157 18-239 167-330 (588)
74 PRK14085 imidazolonepropionase 93.6 1.4 3.1E-05 41.2 12.5 129 55-239 207-344 (382)
75 COG3618 Predicted metal-depend 93.0 3 6.6E-05 38.2 13.1 128 55-238 124-278 (279)
76 TIGR02022 hutF formiminoglutam 92.9 4.5 9.8E-05 39.0 15.1 69 55-124 216-296 (455)
77 PRK09061 D-glutamate deacylase 92.9 0.76 1.6E-05 45.2 9.8 91 15-116 164-276 (509)
78 PF01244 Peptidase_M19: Membra 92.4 0.52 1.1E-05 43.7 7.6 91 99-237 210-319 (320)
79 PRK09230 cytosine deaminase; P 92.4 3.5 7.6E-05 39.5 13.4 71 53-124 193-278 (426)
80 cd01306 PhnM PhnM is believed 92.3 1.8 3.8E-05 40.4 11.0 61 55-121 163-223 (325)
81 cd00443 ADA_AMPD Adenosine/AMP 92.2 9.1 0.0002 34.9 17.2 124 54-236 152-292 (305)
82 cd01315 L-HYD_ALN L-Hydantoina 91.5 5.4 0.00012 37.9 13.7 36 204-239 338-373 (447)
83 PRK05985 cytosine deaminase; P 90.6 6 0.00013 37.0 12.8 90 55-145 191-299 (391)
84 PRK15446 phosphonate metabolis 89.6 3.3 7.1E-05 39.2 10.2 61 55-121 214-274 (383)
85 COG0402 SsnA Cytosine deaminas 89.3 2.7 5.9E-05 39.9 9.5 72 53-124 196-279 (421)
86 PLN02795 allantoinase 89.2 13 0.00029 36.4 14.4 40 199-239 389-428 (505)
87 TIGR02033 D-hydantoinase D-hyd 89.0 4.8 0.0001 38.2 11.0 35 205-239 344-378 (454)
88 cd01317 DHOase_IIa Dihydroorot 88.8 8.8 0.00019 35.8 12.4 155 49-243 166-329 (374)
89 TIGR03121 one_C_dehyd_A formyl 87.5 8.1 0.00017 38.8 11.7 23 217-239 428-450 (556)
90 TIGR02318 phosphono_phnM phosp 87.2 24 0.00052 33.3 14.3 61 55-121 209-269 (376)
91 COG1001 AdeC Adenine deaminase 86.8 14 0.0003 37.2 12.7 159 18-240 159-324 (584)
92 cd01301 rDP_like renal dipepti 86.7 3.7 8E-05 38.0 8.3 86 102-235 207-309 (309)
93 COG1228 HutI Imidazolonepropio 86.5 12 0.00025 36.0 11.9 123 58-240 223-357 (406)
94 cd01321 ADGF Adenosine deamina 85.7 31 0.00068 32.3 16.8 66 54-123 178-254 (345)
95 PRK08417 dihydroorotase; Provi 85.1 21 0.00046 33.6 12.8 44 200-243 296-339 (386)
96 COG1574 Predicted metal-depend 84.5 4.4 9.5E-05 40.4 8.1 102 51-152 317-445 (535)
97 TIGR03178 allantoinase allanto 84.3 21 0.00045 34.1 12.6 150 49-239 210-370 (443)
98 PRK13125 trpA tryptophan synth 84.2 20 0.00043 31.7 11.5 110 6-120 6-134 (244)
99 PRK08323 phenylhydantoinase; V 83.1 39 0.00084 32.2 13.9 34 205-238 342-375 (459)
100 PRK08044 allantoinase; Provisi 81.8 18 0.00039 34.9 11.0 149 49-239 216-375 (449)
101 PF00962 A_deaminase: Adenosin 80.5 35 0.00076 31.0 12.1 152 15-234 146-316 (331)
102 PRK07369 dihydroorotase; Provi 80.0 15 0.00032 35.2 9.7 151 49-243 208-371 (418)
103 PRK06189 allantoinase; Provisi 79.9 38 0.00082 32.5 12.6 149 49-239 213-373 (451)
104 cd01314 D-HYD D-hydantoinases 78.6 55 0.0012 31.0 13.2 35 205-239 342-376 (447)
105 PRK13404 dihydropyrimidinase; 76.9 31 0.00067 33.6 11.1 160 49-238 215-384 (477)
106 PRK09357 pyrC dihydroorotase; 76.8 67 0.0015 30.3 13.1 40 204-243 329-368 (423)
107 PRK09236 dihydroorotase; Revie 76.0 75 0.0016 30.4 14.0 148 49-239 210-368 (444)
108 smart00518 AP2Ec AP endonuclea 75.0 28 0.00061 30.6 9.5 62 13-75 41-105 (273)
109 cd01318 DHOase_IIb Dihydroorot 74.4 66 0.0014 30.1 12.2 148 49-240 152-308 (361)
110 PLN02599 dihydroorotase 74.3 42 0.0009 31.8 10.9 38 200-239 286-323 (364)
111 TIGR00856 pyrC_dimer dihydroor 74.1 51 0.0011 30.7 11.3 39 199-239 263-301 (341)
112 TIGR03569 NeuB_NnaB N-acetylne 73.2 37 0.0008 31.8 10.1 63 60-122 125-201 (329)
113 TIGR01792 urease_alph urease, 72.4 8.7 0.00019 38.6 6.0 61 19-91 202-265 (567)
114 COG0418 PyrC Dihydroorotase [N 72.2 66 0.0014 30.2 11.2 143 54-239 117-304 (344)
115 PRK09230 cytosine deaminase; P 72.0 37 0.00081 32.4 10.1 43 58-104 227-279 (426)
116 PRK07575 dihydroorotase; Provi 71.6 52 0.0011 31.5 11.0 148 49-239 206-362 (438)
117 cd08582 GDPD_like_2 Glyceropho 71.3 19 0.00042 31.1 7.4 57 56-114 88-150 (233)
118 cd01302 Cyclic_amidohydrolases 69.9 15 0.00033 33.8 6.8 58 55-119 115-174 (337)
119 COG0816 Predicted endonuclease 67.4 49 0.0011 27.2 8.5 72 17-91 40-112 (141)
120 PF03102 NeuB: NeuB family; I 67.3 18 0.00038 32.4 6.3 103 14-123 53-180 (241)
121 TIGR03586 PseI pseudaminic aci 65.9 62 0.0013 30.3 9.9 62 60-122 126-200 (327)
122 cd08562 GDPD_EcUgpQ_like Glyce 64.6 38 0.00083 28.9 7.9 57 56-114 88-151 (229)
123 PRK07203 putative chlorohydrol 64.4 25 0.00055 33.5 7.3 59 61-123 244-312 (442)
124 PRK09228 guanine deaminase; Pr 63.3 78 0.0017 30.2 10.4 88 3-103 197-295 (433)
125 PRK09060 dihydroorotase; Valid 62.7 69 0.0015 30.8 10.0 146 49-239 208-364 (444)
126 TIGR03178 allantoinase allanto 62.6 52 0.0011 31.4 9.1 23 55-77 161-183 (443)
127 PRK08392 hypothetical protein; 62.3 79 0.0017 27.1 9.4 90 4-121 91-180 (215)
128 cd01317 DHOase_IIa Dihydroorot 61.0 46 0.001 31.0 8.2 23 55-77 120-142 (374)
129 PRK07213 chlorohydrolase; Prov 59.9 77 0.0017 29.5 9.5 59 61-123 218-284 (375)
130 PRK09856 fructoselysine 3-epim 55.8 1.4E+02 0.003 26.1 11.3 97 14-113 44-169 (275)
131 PRK09856 fructoselysine 3-epim 55.8 68 0.0015 28.1 8.1 67 50-116 124-201 (275)
132 cd04724 Tryptophan_synthase_al 55.3 1.5E+02 0.0032 26.1 11.0 96 18-119 16-133 (242)
133 TIGR00250 RNAse_H_YqgF RNAse H 55.1 1.1E+02 0.0024 24.5 9.1 73 16-91 34-107 (130)
134 cd01305 archeal_chlorohydrolas 54.7 36 0.00078 29.9 6.1 36 63-102 159-194 (263)
135 COG1387 HIS2 Histidinol phosph 53.0 86 0.0019 27.6 8.2 83 17-123 112-194 (237)
136 TIGR00857 pyrC_multi dihydroor 53.0 57 0.0012 30.9 7.5 39 201-240 314-352 (411)
137 PRK00109 Holliday junction res 52.8 1.2E+02 0.0027 24.5 8.9 72 17-91 41-113 (138)
138 PF01402 RHH_1: Ribbon-helix-h 52.6 37 0.00079 20.9 4.2 32 202-233 6-37 (39)
139 PF06187 DUF993: Protein of un 52.5 1.1E+02 0.0023 29.2 8.8 67 31-101 109-186 (382)
140 smart00633 Glyco_10 Glycosyl h 51.9 58 0.0013 28.7 6.9 19 56-74 170-188 (254)
141 TIGR01431 adm_rel adenosine de 51.3 2.5E+02 0.0055 27.6 12.7 85 55-146 306-415 (479)
142 TIGR00857 pyrC_multi dihydroor 51.0 2.2E+02 0.0048 26.9 12.2 71 49-124 193-268 (411)
143 cd04726 KGPDC_HPS 3-Keto-L-gul 50.2 1.1E+02 0.0025 25.4 8.2 106 19-139 15-132 (202)
144 TIGR03128 RuMP_HxlA 3-hexulose 49.1 1.1E+02 0.0024 25.7 8.0 92 16-121 11-108 (206)
145 PRK08393 N-ethylammeline chlor 49.1 83 0.0018 29.8 8.0 37 61-101 228-268 (424)
146 PRK02382 dihydroorotase; Provi 48.9 2.5E+02 0.0053 26.8 14.8 35 204-239 327-361 (443)
147 COG1456 CdhE CO dehydrogenase/ 48.9 36 0.00079 32.6 5.2 49 53-103 190-243 (467)
148 PRK07583 cytosine deaminase-li 48.4 2.1E+02 0.0045 27.3 10.6 23 218-240 359-381 (438)
149 cd00127 DSPc Dual specificity 47.2 41 0.00088 26.0 4.7 32 50-81 63-94 (139)
150 PRK05451 dihydroorotase; Provi 47.2 88 0.0019 29.0 7.6 35 205-241 272-306 (345)
151 cd00854 NagA N-acetylglucosami 46.5 2.5E+02 0.0054 26.2 11.9 153 58-239 175-344 (374)
152 TIGR02967 guan_deamin guanine 46.1 96 0.0021 28.9 7.8 38 61-102 228-269 (401)
153 TIGR03314 Se_ssnA putative sel 45.6 84 0.0018 30.1 7.4 51 69-123 255-311 (441)
154 TIGR00693 thiE thiamine-phosph 45.6 1.8E+02 0.0038 24.2 9.2 88 17-122 14-103 (196)
155 PF04273 DUF442: Putative phos 45.5 17 0.00036 28.5 2.2 14 95-108 88-101 (110)
156 cd00739 DHPS DHPS subgroup of 45.0 93 0.002 27.9 7.2 64 58-121 110-204 (257)
157 PF07905 PucR: Purine cataboli 44.7 45 0.00098 26.2 4.6 55 19-84 61-116 (123)
158 PRK12738 kbaY tagatose-bisphos 44.4 63 0.0014 29.7 6.1 59 55-116 29-98 (286)
159 cd08556 GDPD Glycerophosphodie 43.8 90 0.0019 25.3 6.5 94 14-114 11-110 (189)
160 PRK13209 L-xylulose 5-phosphat 43.8 1.3E+02 0.0029 26.4 8.0 60 14-73 54-117 (283)
161 PRK01060 endonuclease IV; Prov 43.8 92 0.002 27.4 7.0 67 9-75 39-110 (281)
162 PRK13995 potassium-transportin 42.8 33 0.00072 30.0 3.8 36 203-238 145-181 (203)
163 PF01261 AP_endonuc_2: Xylose 42.6 47 0.001 27.1 4.6 61 49-109 106-177 (213)
164 PF01261 AP_endonuc_2: Xylose 42.2 1.9E+02 0.004 23.5 9.4 73 3-76 11-93 (213)
165 PRK13985 ureB urease subunit b 41.4 63 0.0014 32.6 5.9 49 19-78 203-251 (568)
166 PRK06846 putative deaminase; V 41.3 2.5E+02 0.0054 26.4 9.9 65 55-123 235-311 (410)
167 cd03309 CmuC_like CmuC_like. P 41.1 1.4E+02 0.003 27.6 7.9 65 54-122 197-262 (321)
168 TIGR01430 aden_deam adenosine 40.9 1.7E+02 0.0038 26.5 8.5 53 66-122 207-271 (324)
169 TIGR03234 OH-pyruv-isom hydrox 40.8 2E+02 0.0043 24.8 8.6 44 55-98 123-176 (254)
170 PRK14001 potassium-transportin 40.4 37 0.0008 29.4 3.7 36 203-238 135-171 (189)
171 PRK13209 L-xylulose 5-phosphat 39.8 2.6E+02 0.0056 24.5 11.6 39 53-91 136-179 (283)
172 PRK00315 potassium-transportin 39.3 38 0.00083 29.4 3.6 37 203-239 135-172 (193)
173 PRK09059 dihydroorotase; Valid 39.3 2.6E+02 0.0056 26.8 9.7 152 49-243 212-374 (429)
174 PRK09997 hydroxypyruvate isome 39.1 1.7E+02 0.0037 25.5 7.9 49 54-102 123-184 (258)
175 PRK14003 potassium-transportin 38.4 45 0.00097 29.0 3.9 36 203-238 138-174 (194)
176 PF00325 Crp: Bacterial regula 38.1 39 0.00084 20.8 2.5 21 210-230 5-25 (32)
177 TIGR00681 kdpC K+-transporting 38.1 44 0.00094 28.9 3.7 36 203-238 133-169 (187)
178 COG0191 Fba Fructose/tagatose 38.1 2.2E+02 0.0047 26.4 8.4 59 55-116 29-99 (286)
179 PRK06886 hypothetical protein; 37.9 2.4E+02 0.0051 26.3 8.9 90 2-102 144-244 (329)
180 cd08573 GDPD_GDE1 Glycerophosp 37.9 1.5E+02 0.0032 26.3 7.4 57 56-114 90-150 (258)
181 PRK13404 dihydropyrimidinase; 37.8 1.4E+02 0.0031 28.9 7.8 24 55-78 166-189 (477)
182 PRK13997 potassium-transportin 37.8 40 0.00087 29.3 3.5 36 203-238 137-173 (193)
183 PRK14002 potassium-transportin 37.5 44 0.00095 28.9 3.6 36 203-238 131-167 (186)
184 PRK13999 potassium-transportin 37.3 44 0.00096 29.2 3.7 36 203-238 144-180 (201)
185 PF07611 DUF1574: Protein of u 37.1 64 0.0014 30.5 5.0 44 48-91 245-288 (345)
186 COG1082 IolE Sugar phosphate i 37.1 2.1E+02 0.0046 24.6 8.2 58 19-76 47-106 (274)
187 COG1938 Archaeal enzymes of AT 37.1 89 0.0019 28.2 5.7 87 50-145 89-183 (244)
188 TIGR01244 conserved hypothetic 36.9 45 0.00097 26.7 3.5 26 51-79 72-97 (135)
189 PRK09196 fructose-1,6-bisphosp 36.6 82 0.0018 29.8 5.6 55 57-116 214-271 (347)
190 PRK13996 potassium-transportin 36.5 46 0.00099 29.1 3.6 36 203-238 141-177 (197)
191 cd00453 FTBP_aldolase_II Fruct 36.4 1.5E+02 0.0033 28.0 7.4 65 55-122 24-118 (340)
192 cd01314 D-HYD D-hydantoinases 36.4 1.5E+02 0.0033 28.0 7.6 24 54-77 161-184 (447)
193 cd03308 CmuA_CmuC_like CmuA_Cm 35.9 1.9E+02 0.0041 27.2 8.1 57 55-113 255-311 (378)
194 cd01303 GDEase Guanine deamina 35.6 2E+02 0.0043 27.4 8.2 39 61-103 250-292 (429)
195 PRK00043 thiE thiamine-phospha 35.4 1.9E+02 0.0042 24.1 7.4 105 18-139 23-130 (212)
196 KOG3968 Atrazine chlorohydrola 35.0 1.6E+02 0.0036 28.7 7.4 70 54-123 219-302 (439)
197 TIGR00694 thiM hydroxyethylthi 35.0 1.1E+02 0.0024 27.0 6.0 49 19-77 40-88 (249)
198 cd03465 URO-D_like The URO-D _ 34.9 1.8E+02 0.004 26.1 7.6 55 54-112 207-262 (330)
199 TIGR01521 FruBisAldo_II_B fruc 34.8 1.5E+02 0.0032 28.2 7.0 60 55-116 27-97 (347)
200 PF02007 MtrH: Tetrahydrometha 34.8 68 0.0015 29.7 4.6 94 29-125 20-130 (296)
201 PRK13207 ureC urease subunit a 34.6 89 0.0019 31.6 5.8 87 19-120 203-298 (568)
202 PRK07572 cytosine deaminase; V 34.5 3.1E+02 0.0067 26.0 9.4 88 2-102 174-273 (426)
203 PTZ00242 protein tyrosine phos 34.2 2E+02 0.0043 23.9 7.1 28 53-80 79-110 (166)
204 PRK12857 fructose-1,6-bisphosp 33.7 1.6E+02 0.0035 27.0 6.9 59 55-116 29-98 (284)
205 PF10543 ORF6N: ORF6N domain; 33.7 45 0.00097 24.9 2.8 28 209-236 14-41 (88)
206 PRK12737 gatY tagatose-bisphos 33.6 1.7E+02 0.0037 26.8 7.1 63 55-121 29-102 (284)
207 PRK07369 dihydroorotase; Provi 33.5 1.6E+02 0.0035 28.2 7.2 23 55-77 162-184 (418)
208 PRK05835 fructose-bisphosphate 33.3 1.1E+02 0.0025 28.4 5.9 51 62-116 198-249 (307)
209 COG0044 PyrC Dihydroorotase an 32.8 2.7E+02 0.0058 27.0 8.7 147 49-240 204-363 (430)
210 COG1242 Predicted Fe-S oxidore 32.7 2.7E+02 0.0059 25.9 8.1 104 3-112 119-233 (312)
211 TIGR00542 hxl6Piso_put hexulos 32.7 3.4E+02 0.0075 23.8 10.1 61 14-75 49-115 (279)
212 TIGR02022 hutF formiminoglutam 32.5 4.4E+02 0.0096 25.3 10.2 58 61-122 254-321 (455)
213 cd08565 GDPD_pAtGDE_like Glyce 32.5 2E+02 0.0043 25.0 7.2 56 56-114 83-147 (235)
214 PRK09195 gatY tagatose-bisphos 32.4 2.1E+02 0.0045 26.3 7.4 59 55-116 29-98 (284)
215 cd08560 GDPD_EcGlpQ_like_1 Gly 32.4 1.6E+02 0.0035 27.8 6.9 59 54-114 150-223 (356)
216 PRK13399 fructose-1,6-bisphosp 32.2 1.2E+02 0.0025 28.8 5.9 56 57-116 214-271 (347)
217 smart00195 DSPc Dual specifici 32.0 89 0.0019 24.3 4.5 32 50-81 60-91 (138)
218 cd00405 PRAI Phosphoribosylant 31.9 2.3E+02 0.005 23.9 7.3 86 57-145 40-132 (203)
219 PRK07535 methyltetrahydrofolat 31.9 1.6E+02 0.0036 26.4 6.6 16 57-72 105-120 (261)
220 PRK07627 dihydroorotase; Provi 31.7 1.9E+02 0.004 27.7 7.4 37 205-242 332-368 (425)
221 PRK00979 tetrahydromethanopter 31.6 1.1E+02 0.0023 28.7 5.4 81 29-114 25-115 (308)
222 TIGR01859 fruc_bis_ald_ fructo 31.6 2.2E+02 0.0048 25.9 7.5 60 55-116 27-98 (282)
223 PRK09196 fructose-1,6-bisphosp 31.5 1.4E+02 0.0031 28.2 6.4 64 55-120 29-102 (347)
224 cd01316 CAD_DHOase The eukaryo 31.3 4.3E+02 0.0094 24.5 10.8 42 199-241 242-283 (344)
225 PF13541 ChlI: Subunit ChlI of 31.2 31 0.00068 27.5 1.7 33 29-69 80-112 (121)
226 cd08567 GDPD_SpGDE_like Glycer 31.2 2.3E+02 0.005 24.5 7.4 56 56-114 111-182 (263)
227 PRK14047 putative methyltransf 31.0 84 0.0018 29.3 4.6 94 29-125 25-135 (310)
228 COG0352 ThiE Thiamine monophos 30.9 1.9E+02 0.0042 25.3 6.7 95 19-123 24-133 (211)
229 PRK08999 hypothetical protein; 30.4 2.8E+02 0.006 25.0 8.0 28 49-76 169-196 (312)
230 cd08579 GDPD_memb_like Glycero 30.4 2.2E+02 0.0047 24.2 7.0 55 56-113 84-145 (220)
231 PRK09355 hydroxyethylthiazole 30.2 1.4E+02 0.0031 26.6 5.9 49 19-77 45-93 (263)
232 TIGR01858 tag_bisphos_ald clas 30.0 2.1E+02 0.0046 26.2 7.1 59 55-116 27-96 (282)
233 cd08559 GDPD_periplasmic_GlpQ_ 30.0 2.2E+02 0.0049 25.6 7.3 59 54-114 108-184 (296)
234 PRK13210 putative L-xylulose 5 29.7 3.8E+02 0.0082 23.3 11.7 59 14-73 49-112 (284)
235 PRK15493 5-methylthioadenosine 29.7 5E+02 0.011 24.7 10.3 38 61-102 236-277 (435)
236 cd01293 Bact_CD Bacterial cyto 29.5 2.4E+02 0.0051 25.7 7.5 74 15-104 187-273 (398)
237 PRK13994 potassium-transportin 29.5 64 0.0014 28.7 3.5 36 203-238 165-201 (222)
238 PRK07315 fructose-bisphosphate 29.5 2.8E+02 0.0061 25.4 7.9 61 55-116 29-100 (293)
239 PRK08185 hypothetical protein; 29.2 2.5E+02 0.0054 25.7 7.4 62 55-116 24-92 (283)
240 PRK08610 fructose-bisphosphate 29.1 2.2E+02 0.0047 26.2 7.0 61 55-116 29-101 (286)
241 COG2089 SpsE Sialic acid synth 29.1 1.5E+02 0.0032 28.1 5.9 87 15-103 88-185 (347)
242 PF00809 Pterin_bind: Pterin b 29.1 1.3E+02 0.0028 25.9 5.3 20 57-76 105-125 (210)
243 PF08444 Gly_acyl_tr_C: Aralky 28.9 1.1E+02 0.0024 23.2 4.3 57 34-91 19-75 (89)
244 PF12085 DUF3562: Protein of u 28.8 1.3E+02 0.0028 21.8 4.3 32 205-236 5-36 (66)
245 PF01116 F_bP_aldolase: Fructo 28.7 1.8E+02 0.0039 26.6 6.4 59 55-116 28-97 (287)
246 PRK06038 N-ethylammeline chlor 28.7 5.1E+02 0.011 24.5 9.9 29 70-102 242-270 (430)
247 PRK05985 cytosine deaminase; P 28.6 3.7E+02 0.0081 24.9 8.8 62 58-123 223-296 (391)
248 cd00375 Urease_alpha Urease al 28.3 1.2E+02 0.0026 30.6 5.6 48 19-77 203-250 (567)
249 PRK13399 fructose-1,6-bisphosp 28.3 2.1E+02 0.0045 27.1 6.9 61 55-116 29-99 (347)
250 PRK11148 cyclic 3',5'-adenosin 28.1 89 0.0019 27.7 4.3 55 36-90 124-194 (275)
251 PRK07627 dihydroorotase; Provi 28.0 5.4E+02 0.012 24.6 11.8 94 49-145 207-310 (425)
252 cd01533 4RHOD_Repeat_2 Member 27.7 2.3E+02 0.0049 21.0 6.0 22 95-116 68-91 (109)
253 TIGR01114 mtrH N5-methyltetrah 27.6 1.1E+02 0.0023 28.7 4.6 94 29-125 25-135 (314)
254 cd01313 Met_dep_hydrolase_E Me 27.5 5.3E+02 0.011 24.3 10.1 30 70-103 258-287 (418)
255 TIGR00542 hxl6Piso_put hexulos 27.4 2.2E+02 0.0049 25.0 6.7 38 54-91 132-174 (279)
256 cd08563 GDPD_TtGDE_like Glycer 27.3 2.9E+02 0.0063 23.6 7.3 56 56-114 90-152 (230)
257 cd00947 TBP_aldolase_IIB Tagat 27.0 2.4E+02 0.0052 25.7 6.8 62 55-116 24-93 (276)
258 PRK05835 fructose-bisphosphate 26.9 2.9E+02 0.0062 25.7 7.4 60 55-116 28-98 (307)
259 PRK08044 allantoinase; Provisi 26.6 2.4E+02 0.0053 27.1 7.3 24 55-78 167-190 (449)
260 PF02581 TMP-TENI: Thiamine mo 26.5 3.7E+02 0.008 22.2 8.5 91 16-122 12-102 (180)
261 PRK08203 hydroxydechloroatrazi 26.4 5.6E+02 0.012 24.3 10.7 30 69-102 265-294 (451)
262 COG3737 Uncharacterized conser 26.4 2.9E+02 0.0063 22.4 6.3 73 5-90 43-118 (127)
263 TIGR01496 DHPS dihydropteroate 26.1 2.3E+02 0.0051 25.3 6.6 26 65-90 92-118 (257)
264 CHL00200 trpA tryptophan synth 25.9 4.9E+02 0.011 23.4 9.4 93 18-117 31-146 (263)
265 COG0826 Collagenase and relate 25.6 5.4E+02 0.012 24.2 9.2 51 17-71 14-65 (347)
266 TIGR01521 FruBisAldo_II_B fruc 25.5 1.5E+02 0.0032 28.1 5.3 61 57-121 212-275 (347)
267 cd08581 GDPD_like_1 Glyceropho 25.5 2.7E+02 0.0058 24.1 6.7 57 56-114 90-154 (229)
268 PF03652 UPF0081: Uncharacteri 25.5 2.2E+02 0.0047 22.9 5.7 72 16-90 37-110 (135)
269 PRK14000 potassium-transportin 25.2 85 0.0018 27.1 3.4 35 203-237 134-169 (185)
270 PRK14040 oxaloacetate decarbox 25.2 4.2E+02 0.0091 26.9 8.8 59 55-116 97-169 (593)
271 PF13936 HTH_38: Helix-turn-he 25.0 98 0.0021 19.9 3.0 24 208-231 21-44 (44)
272 cd08566 GDPD_AtGDE_like Glycer 25.0 2.8E+02 0.006 24.2 6.8 55 56-114 89-144 (240)
273 PF00215 OMPdecase: Orotidine 24.9 2E+02 0.0044 24.7 5.8 73 30-113 25-105 (226)
274 PRK07998 gatY putative fructos 24.8 4.4E+02 0.0095 24.2 8.2 59 55-116 29-98 (283)
275 PRK09229 N-formimino-L-glutama 24.7 6.2E+02 0.013 24.2 10.3 49 70-122 267-321 (456)
276 PRK06687 chlorohydrolase; Vali 24.7 3.4E+02 0.0074 25.4 7.8 29 70-102 248-276 (419)
277 COG2070 Dioxygenases related t 24.5 3.5E+02 0.0077 25.3 7.7 84 16-115 54-147 (336)
278 PRK06801 hypothetical protein; 24.3 4.7E+02 0.01 23.9 8.3 59 55-116 29-98 (286)
279 TIGR00162 conserved hypothetic 24.3 4.5E+02 0.0097 22.4 9.3 83 50-143 29-122 (188)
280 PRK07709 fructose-bisphosphate 24.3 4.2E+02 0.0091 24.3 8.0 61 55-116 29-101 (285)
281 PTZ00393 protein tyrosine phos 24.2 99 0.0021 27.8 3.7 33 49-81 151-183 (241)
282 PF00682 HMGL-like: HMGL-like 24.1 4.6E+02 0.0099 22.4 9.4 68 14-91 11-81 (237)
283 PRK09045 N-ethylammeline chlor 24.1 6.2E+02 0.013 24.0 10.0 29 70-102 254-282 (443)
284 TIGR03151 enACPred_II putative 24.0 3.5E+02 0.0077 24.8 7.5 55 57-116 76-130 (307)
285 cd00842 MPP_ASMase acid sphing 23.8 1.2E+02 0.0027 26.9 4.4 42 49-90 194-247 (296)
286 PF01208 URO-D: Uroporphyrinog 23.7 1.4E+02 0.003 27.2 4.8 38 54-91 219-257 (343)
287 PRK13111 trpA tryptophan synth 23.7 5.3E+02 0.012 23.1 9.8 88 18-112 28-135 (258)
288 PF02669 KdpC: K+-transporting 23.6 96 0.0021 26.9 3.4 32 203-234 134-165 (188)
289 TIGR03767 P_acnes_RR metalloph 23.6 88 0.0019 31.1 3.5 41 50-90 321-379 (496)
290 smart00404 PTPc_motif Protein 23.6 87 0.0019 22.4 2.8 13 68-80 39-51 (105)
291 smart00012 PTPc_DSPc Protein t 23.6 87 0.0019 22.4 2.8 13 68-80 39-51 (105)
292 PRK12679 cbl transcriptional r 23.5 3.8E+02 0.0083 23.9 7.6 55 67-124 190-246 (316)
293 PRK13998 potassium-transportin 23.5 94 0.002 26.9 3.3 32 203-234 133-164 (186)
294 KOG1530 Rhodanese-related sulf 23.4 97 0.0021 25.5 3.2 82 19-116 27-114 (136)
295 COG1244 Predicted Fe-S oxidore 23.4 3.7E+02 0.0081 25.5 7.4 97 15-117 149-262 (358)
296 PF01979 Amidohydro_1: Amidohy 23.3 2.8E+02 0.0061 24.3 6.6 68 55-122 144-234 (333)
297 PF03537 Glyco_hydro_114: Glyc 23.3 91 0.002 22.5 2.8 27 96-122 30-60 (74)
298 cd08600 GDPD_EcGlpQ_like Glyce 23.3 3.5E+02 0.0076 24.9 7.4 59 53-113 114-190 (318)
299 COG0402 SsnA Cytosine deaminas 23.2 6.4E+02 0.014 23.8 9.5 88 3-103 184-279 (421)
300 TIGR01212 radical SAM protein, 22.3 5.9E+02 0.013 23.1 9.7 106 4-117 114-232 (302)
301 cd01312 Met_dep_hydrolase_D Me 22.3 6.5E+02 0.014 23.5 10.5 39 61-103 220-262 (381)
302 cd07944 DRE_TIM_HOA_like 4-hyd 22.2 3E+02 0.0064 24.6 6.5 106 14-123 17-130 (266)
303 cd08602 GDPD_ScGlpQ1_like Glyc 22.0 3.8E+02 0.0082 24.5 7.3 58 55-114 114-190 (309)
304 PF13378 MR_MLE_C: Enolase C-t 22.0 81 0.0017 23.8 2.4 23 54-76 32-54 (111)
305 cd01309 Met_dep_hydrolase_C Me 22.0 3.5E+02 0.0077 25.0 7.2 62 57-122 205-278 (359)
306 PLN02303 urease 21.8 69 0.0015 33.8 2.6 24 54-77 496-519 (837)
307 PF01113 DapB_N: Dihydrodipico 21.8 3.3E+02 0.0072 21.1 6.0 45 55-101 78-122 (124)
308 COG2108 Uncharacterized conser 21.6 2.3E+02 0.005 26.9 5.7 83 35-119 131-219 (353)
309 cd01170 THZ_kinase 4-methyl-5- 21.6 2.8E+02 0.006 24.3 6.1 48 19-76 40-87 (242)
310 cd04743 NPD_PKS 2-Nitropropane 21.4 4.1E+02 0.0089 24.8 7.4 54 57-116 71-124 (320)
311 PF04183 IucA_IucC: IucA / Iuc 21.4 28 0.0006 30.9 -0.3 38 3-43 97-134 (251)
312 PRK09248 putative hydrolase; V 21.2 1.5E+02 0.0033 25.8 4.4 54 58-115 175-235 (246)
313 PF09345 DUF1987: Domain of un 21.2 2.2E+02 0.0049 21.9 4.7 50 54-103 28-86 (99)
314 PRK02308 uvsE putative UV dama 21.1 2.4E+02 0.0052 25.9 5.8 67 9-77 83-156 (303)
315 cd08605 GDPD_GDE5_like_1_plant 20.9 5.9E+02 0.013 22.5 8.5 92 13-116 177-274 (282)
316 KOG4127 Renal dipeptidase [Pos 20.8 3.1E+02 0.0068 26.4 6.4 31 206-237 359-389 (419)
317 KOG4245 Predicted metal-depend 20.7 1E+02 0.0022 27.4 3.0 66 3-78 69-134 (297)
318 smart00760 Bac_DnaA_C Bacteria 20.7 1.1E+02 0.0024 20.8 2.7 21 206-226 2-22 (60)
319 PRK06512 thiamine-phosphate py 20.7 5.5E+02 0.012 22.4 7.7 53 17-76 27-79 (221)
320 cd00245 Glm_e Coenzyme B12-dep 20.4 2.7E+02 0.0058 27.2 6.1 110 8-126 20-132 (428)
321 smart00732 YqgFc Likely ribonu 20.4 3.4E+02 0.0073 19.5 5.9 54 16-74 37-90 (99)
322 PF02796 HTH_7: Helix-turn-hel 20.3 64 0.0014 20.7 1.3 22 210-231 24-45 (45)
323 PF10566 Glyco_hydro_97: Glyco 20.2 1E+02 0.0022 28.2 3.1 51 19-76 108-158 (273)
324 PF05402 PqqD: Coenzyme PQQ sy 20.1 1.7E+02 0.0036 20.0 3.6 30 201-230 27-56 (68)
No 1
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.6e-55 Score=388.81 Aligned_cols=190 Identities=39% Similarity=0.490 Sum_probs=174.3
Q ss_pred ceeeecccccCCCChhHHHHHHHHhhc-CCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecccHH
Q 025866 2 DWVCFIFRFVQERTPNWFSTLKEFFEI-TPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFG 80 (247)
Q Consensus 2 ~~~g~hP~~~~~~~~~~l~~l~~~l~~-~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~ 80 (247)
..+|+||++..+..+++++.|.+++.+ ++++|||||||||++... .+++.|+++|++||++|+++++||+||+|+|++
T Consensus 59 ~~~G~HP~~~~~~~~~~~~~l~~~~~~~~~vvaIGEiGLDy~~~~~-~~~~~Q~~~F~~ql~lA~~~~lPviIH~R~A~~ 137 (256)
T COG0084 59 AAVGVHPLDADEHSEEDLEELEQLAEHHPKVVAIGEIGLDYYWDKE-PDKERQEEVFEAQLELAKELNLPVIIHTRDAHE 137 (256)
T ss_pred EEEeeCCCccccccHHHHHHHHHHHhcCCCeEEEEecccCcccccc-ccHHHHHHHHHHHHHHHHHcCCCEEEEccccHH
Confidence 368999999434458899999999986 899999999999998642 268899999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCCeeeeccccccccccC-------CCCCceEEecCCCCCCCchhhc
Q 025866 81 DLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQK-------VPSERILLETDAPDALPKAELN 153 (247)
Q Consensus 81 ~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~G~~~Si~~~i~~~~~~~-------iPldriLlETD~P~~~p~~~~~ 153 (247)
+++++|++++. +.++|+||||||.+++++++++|+||||||.+|++++.+ +|+||||+|||+||+.|.|+|
T Consensus 138 d~~~iL~~~~~-~~~gi~HcFsGs~e~a~~~~d~G~yisisG~itfk~a~~~~ev~~~iPldrLL~ETDsPyl~P~p~r- 215 (256)
T COG0084 138 DTLEILKEEGA-PVGGVLHCFSGSAEEARKLLDLGFYISISGIVTFKNAEKLREVARELPLDRLLLETDAPYLAPVPYR- 215 (256)
T ss_pred HHHHHHHhcCC-CCCEEEEccCCCHHHHHHHHHcCeEEEECceeecCCcHHHHHHHHhCCHhHeEeccCCCCCCCcCCC-
Confidence 99999999875 467899999999999999999999999999999988553 999999999999999998765
Q ss_pred cccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCCCcccCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHH
Q 025866 154 SLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAI 233 (247)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~ 233 (247)
| ++|+|+++..|++.||+++|+++++|++++++|++
T Consensus 216 -----------------------------------G---------krNeP~~v~~v~~~iAelk~~~~eeva~~t~~N~~ 251 (256)
T COG0084 216 -----------------------------------G---------KRNEPAYVRHVAEKLAELKGISAEEVAEITTENAK 251 (256)
T ss_pred -----------------------------------C---------CCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4 89999999999999999999999999999999999
Q ss_pred HhhCC
Q 025866 234 RLFSY 238 (247)
Q Consensus 234 ~~f~~ 238 (247)
++|++
T Consensus 252 ~lf~~ 256 (256)
T COG0084 252 RLFGL 256 (256)
T ss_pred HHhcC
Confidence 99985
No 2
>PRK10425 DNase TatD; Provisional
Probab=100.00 E-value=1.1e-51 Score=369.18 Aligned_cols=193 Identities=26% Similarity=0.340 Sum_probs=169.9
Q ss_pred eeeecccccCCCChhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecccHHHH
Q 025866 3 WVCFIFRFVQERTPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDL 82 (247)
Q Consensus 3 ~~g~hP~~~~~~~~~~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~~~ 82 (247)
++|+|||++.+..++.++.|.+++.+++++|||||||||++. ..+.+.|+++|++||++|+++++||+||+|+|.+++
T Consensus 58 ~~GiHP~~~~~~~~~~~~~l~~~~~~~~~vaIGEiGLDy~~~--~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~r~a~~~~ 135 (258)
T PRK10425 58 TAGVHPHDSSQWQAATEEAIIELAAQPEVVAIGECGLDFNRN--FSTPEEQERAFVAQLAIAAELNMPVFMHCRDAHERF 135 (258)
T ss_pred EEEeCcCccccCCHHHHHHHHHhccCCCEEEEeeeeeccccC--CCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCchHHH
Confidence 689999999887788899999999888899999999999863 346789999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCCeeeecccccccc-cc-------CCCCCceEEecCCCCCCCchhhcc
Q 025866 83 LEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMK-AQ-------KVPSERILLETDAPDALPKAELNS 154 (247)
Q Consensus 83 l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~G~~~Si~~~i~~~~-~~-------~iPldriLlETD~P~~~p~~~~~~ 154 (247)
+++|+++.....++|+|||+|+.+++++++++|+||||+|.+++.+ +. .+|+||||+|||+||+.|.|++
T Consensus 136 l~iL~~~~~~~~~~i~H~fsG~~~~~~~~l~~G~~~si~g~i~~~~~~~~~~~~~~~ipldrlLlETDaP~l~P~~~~-- 213 (258)
T PRK10425 136 MALLEPWLDKLPGAVLHCFTGTREEMQACLARGLYIGITGWVCDERRGLELRELLPLIPAERLLLETDAPYLLPRDLT-- 213 (258)
T ss_pred HHHHHHhccCCCCeEEEecCCCHHHHHHHHHCCCEEEECceeecccccHHHHHHHHhCChHHEEEeccCCCCCCCCcC--
Confidence 9999986322236899999999999999999999999999887643 31 2999999999999999987653
Q ss_pred ccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCCCcccCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Q 025866 155 LFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIR 234 (247)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~ 234 (247)
|+ +.+.+|+|++|+.|++.||+++|++++++++++++|+++
T Consensus 214 ----------------------------------~~-----~~~~~n~P~~i~~v~~~iA~l~~~~~~~v~~~~~~N~~~ 254 (258)
T PRK10425 214 ----------------------------------PK-----PASRRNEPAFLPHILQRIAHWRGEDAAWLAATTDANART 254 (258)
T ss_pred ----------------------------------CC-----CCCCCCCcHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 10 013789999999999999999999999999999999999
Q ss_pred hhCC
Q 025866 235 LFSY 238 (247)
Q Consensus 235 ~f~~ 238 (247)
+|++
T Consensus 255 lf~~ 258 (258)
T PRK10425 255 LFGL 258 (258)
T ss_pred HhCc
Confidence 9985
No 3
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=100.00 E-value=2.3e-50 Score=360.65 Aligned_cols=188 Identities=27% Similarity=0.368 Sum_probs=169.0
Q ss_pred eeeecccccCCCChhHHHHHHHHhhc-C-CceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecccHH
Q 025866 3 WVCFIFRFVQERTPNWFSTLKEFFEI-T-PAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFG 80 (247)
Q Consensus 3 ~~g~hP~~~~~~~~~~l~~l~~~l~~-~-~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~ 80 (247)
++|+|||++.+..++.++.+.+++.. + +++|||||||||++. ..+++.|+++|++||++|+++++||+||+|+|++
T Consensus 62 ~~GiHP~~~~~~~~~~~~~l~~~l~~~~~~~~aIGEiGLD~~~~--~~~~~~Q~~vf~~ql~lA~~~~~Pv~iH~r~a~~ 139 (258)
T PRK11449 62 ALGLHPGMLEKHSDVSLDQLQQALERRPAKVVAVGEIGLDLFGD--DPQFERQQWLLDEQLKLAKRYDLPVILHSRRTHD 139 (258)
T ss_pred EEeeCcCccccCCHHHHHHHHHHHHhCCCCEEEEEecccCCCCC--CCCHHHHHHHHHHHHHHHHHhCCCEEEEecCccH
Confidence 68999999988777788999888853 3 699999999999863 3468999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCCeeeecccccccccc-------CCCCCceEEecCCCCCCCchhhc
Q 025866 81 DLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQ-------KVPSERILLETDAPDALPKAELN 153 (247)
Q Consensus 81 ~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~G~~~Si~~~i~~~~~~-------~iPldriLlETD~P~~~p~~~~~ 153 (247)
+++++|++++. +.++|+|||+|+.+++++++++|+||||+|.++++++. .+|+||||+|||+||+.|.+++
T Consensus 140 ~~~~il~~~~~-~~~~i~H~fsG~~~~a~~~l~~G~~iS~~g~it~~~~~~~~~~~~~ipldriL~ETD~P~l~p~~~~- 217 (258)
T PRK11449 140 KLAMHLKRHDL-PRTGVVHGFSGSLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGFQ- 217 (258)
T ss_pred HHHHHHHhcCC-CCCeEEEcCCCCHHHHHHHHHCCCEEEeCccccccCcHHHHHHHHhCChhhEEEecCCCCCCCCCCC-
Confidence 99999999864 34689999999999999999999999999999876543 2999999999999999876543
Q ss_pred cccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCCCcccCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHH
Q 025866 154 SLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAI 233 (247)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~ 233 (247)
| .+|+|.+++.+++.+|++++++++++++++++|+.
T Consensus 218 -----------------------------------~---------~~n~p~~~~~~~~~ia~l~~~~~~el~~~~~~N~~ 253 (258)
T PRK11449 218 -----------------------------------G---------QPNRPEQAARVFDVLCELRPEPADEIAEVLLNNTY 253 (258)
T ss_pred -----------------------------------C---------CCCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3 78999999999999999999999999999999999
Q ss_pred HhhCC
Q 025866 234 RLFSY 238 (247)
Q Consensus 234 ~~f~~ 238 (247)
++|++
T Consensus 254 ~lf~~ 258 (258)
T PRK11449 254 TLFNV 258 (258)
T ss_pred HHhCc
Confidence 99985
No 4
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=100.00 E-value=1e-50 Score=360.94 Aligned_cols=190 Identities=41% Similarity=0.550 Sum_probs=162.2
Q ss_pred ceeeecccccCCCChhHHHHHHHH--hhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecccH
Q 025866 2 DWVCFIFRFVQERTPNWFSTLKEF--FEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAF 79 (247)
Q Consensus 2 ~~~g~hP~~~~~~~~~~l~~l~~~--l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~ 79 (247)
.++|+|||++....++.++.|+++ +.+.+++|||||||||++. ...+++.|+++|++||+||+++++||+||||+++
T Consensus 57 ~~~GiHP~~~~~~~~~~~~~l~~l~~~~~~~~~aIGEiGLD~~~~-~~~~~~~Q~~vF~~ql~lA~~~~~pv~iH~r~a~ 135 (255)
T PF01026_consen 57 PALGIHPWEAHEVNEEDLEELEELINLNRPKVVAIGEIGLDYYWR-NEEDKEVQEEVFERQLELAKELNLPVSIHCRKAH 135 (255)
T ss_dssp EEE---GGGGGGHSHHHHHHHHHHHHHTSTTEEEEEEEEEETTTT-SSSGHHHHHHHHHHHHHHHHHHTCEEEEEEESHH
T ss_pred EEecCCcchhhhhhHHHHHHHHHHHHhccccceeeeeeccCcccc-cCCcHHHHHHHHHHHHHHHHHhCCcEEEecCCcH
Confidence 368999999998777778888888 8889999999999999654 3578999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCCeeeecccccccccc-------CCCCCceEEecCCCCCCCchhh
Q 025866 80 GDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQ-------KVPSERILLETDAPDALPKAEL 152 (247)
Q Consensus 80 ~~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~G~~~Si~~~i~~~~~~-------~iPldriLlETD~P~~~p~~~~ 152 (247)
++++++|++++....++|+|||+|+.++++++++.|+||||+|.+++.+.. .+|+||||||||+||+.|.|++
T Consensus 136 ~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~~~~g~~~S~~~~~~~~~~~~~~~~~~~ip~drillETD~P~~~~~~~~ 215 (255)
T PF01026_consen 136 EELLEILKEYGPPNLRVIFHCFSGSPEEAKKFLDLGCYFSFSGAITFKNSKKVRELIKAIPLDRILLETDAPYLAPDPYR 215 (255)
T ss_dssp HHHHHHHHHTTGGTSEEEETT--S-HHHHHHHHHTTEEEEEEGGGGSTTSHHHHHHHHHS-GGGEEEE-BTTSSECTTST
T ss_pred HHHHHHHHhccccceeEEEecCCCCHHHHHHHHhcCceEEecccccccccHHHHHHHhcCChhhEEEcCCCCcCCccccC
Confidence 999999999985444799999999999999999999999999998874422 2999999999999999886654
Q ss_pred ccccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCCCcccCcchhHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 025866 153 NSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNA 232 (247)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~ 232 (247)
| .+|+|.+|+.+++.+|++++++++++++++++|+
T Consensus 216 ------------------------------------~---------~~~~p~~i~~~~~~la~~~~~~~e~~~~~~~~N~ 250 (255)
T PF01026_consen 216 ------------------------------------G---------KPNEPSNIPKVAQALAEIKGISLEELAQIIYENA 250 (255)
T ss_dssp ------------------------------------T---------SE--GGGHHHHHHHHHHHHTSTHHHHHHHHHHHH
T ss_pred ------------------------------------C---------CCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2 7899999999999999999999999999999999
Q ss_pred HHhhC
Q 025866 233 IRLFS 237 (247)
Q Consensus 233 ~~~f~ 237 (247)
+++|+
T Consensus 251 ~r~f~ 255 (255)
T PF01026_consen 251 KRLFG 255 (255)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 99996
No 5
>PRK10812 putative DNAse; Provisional
Probab=100.00 E-value=5.5e-50 Score=359.51 Aligned_cols=193 Identities=30% Similarity=0.413 Sum_probs=172.9
Q ss_pred eeeecccccCCCChhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecccHHHH
Q 025866 3 WVCFIFRFVQERTPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDL 82 (247)
Q Consensus 3 ~~g~hP~~~~~~~~~~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~~~ 82 (247)
.+|+|||++.+ +.+++.|.+++.+++++|||||||||++. ..+.+.|+++|++|+++|+++++||+||+|++.+++
T Consensus 63 ~~GiHP~~~~~--~~~~~~l~~~~~~~~vvaIGEiGLD~~~~--~~~~~~Q~~vf~~ql~lA~e~~~Pv~iH~r~a~~~~ 138 (265)
T PRK10812 63 SCGVHPLNQDE--PYDVEELRRLAAEEGVVAMGETGLDYYYT--PETKVRQQESFRHHIQIGRELNKPVIVHTRDARADT 138 (265)
T ss_pred EEEeCCCCCCC--hhHHHHHHHHhcCCCEEEEEeeecCcCCC--CCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCchHHH
Confidence 68999999864 45688999999888899999999999863 346899999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCCeeeecccccccccc-------CCCCCceEEecCCCCCCCchhhccc
Q 025866 83 LEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQ-------KVPSERILLETDAPDALPKAELNSL 155 (247)
Q Consensus 83 l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~G~~~Si~~~i~~~~~~-------~iPldriLlETD~P~~~p~~~~~~~ 155 (247)
+++|++++..+.++|+|||+|+.+++++++++|+||||+|.++++++. .+|+||||+|||+||+.|.|.+
T Consensus 139 l~iL~~~~~~~~~~v~H~fsG~~~~a~~~~~~G~~is~~g~~t~~~~~~~~~~~~~ipldrlLlETD~P~~~p~~~~--- 215 (265)
T PRK10812 139 LAILREEKVTDCGGVLHCFTEDRETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHR--- 215 (265)
T ss_pred HHHHHhhcCCCCCEEEEeecCCHHHHHHHHHCCCEEEECeeeecCccHHHHHHHHhCChhhEEEecCCCCCCCcCCC---
Confidence 999999765445789999999999999999999999999988875543 2899999999999999886543
Q ss_pred cccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCCCcccCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Q 025866 156 FLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRL 235 (247)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~ 235 (247)
| .+|+|++|+.+++.+|+++|++.+++++++++|+.++
T Consensus 216 ---------------------------------g---------~~n~P~~i~~v~~~ia~l~g~~~eei~~~~~~N~~~l 253 (265)
T PRK10812 216 ---------------------------------G---------KENQPAMVRDVAEYMAVLKGVSVEELAQVTTDNFARL 253 (265)
T ss_pred ---------------------------------C---------CCCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 3 7899999999999999999999999999999999999
Q ss_pred hCCCCCccc
Q 025866 236 FSYEGSKIL 244 (247)
Q Consensus 236 f~~~~~~~~ 244 (247)
|++...+|.
T Consensus 254 f~~~~~~~~ 262 (265)
T PRK10812 254 FHIDASRLQ 262 (265)
T ss_pred HCCChHhhh
Confidence 999777664
No 6
>KOG3020 consensus TatD-related DNase [Replication, recombination and repair]
Probab=100.00 E-value=8.7e-46 Score=334.33 Aligned_cols=206 Identities=39% Similarity=0.515 Sum_probs=176.6
Q ss_pred eeeecccccCCCChh-----HHHHHHHHhhc---CCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEe
Q 025866 3 WVCFIFRFVQERTPN-----WFSTLKEFFEI---TPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIH 74 (247)
Q Consensus 3 ~~g~hP~~~~~~~~~-----~l~~l~~~l~~---~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH 74 (247)
.+|+|||+++.+.+. +++.|..++.. ++++|||||||||.+.. +++.+.|+.||++|++||..+++|++||
T Consensus 76 t~G~HP~~~~~~~~~~~~~~~~~~L~~~~~~~~~~k~vAiGEcGLD~~r~~-~~~~~~Qk~vFekQl~LA~~~~~Pl~iH 154 (296)
T KOG3020|consen 76 TFGVHPHFSQEFSDQSRKEKFLDTLLSIIENGFLPKVVAIGECGLDYDRLQ-FSDKEEQKTVFEKQLDLAKRLKLPLFIH 154 (296)
T ss_pred ccCcCCCcccchhhccchhhHHHHHHHHHhhcccCCeEEeeccccccchhc-cCChHHHHHHHHHHHHHHHHccCCeeee
Confidence 479999999988764 79999999988 88999999999998753 7899999999999999999999999999
Q ss_pred ecccHHHHHHHHHhcCCCCC-cEEEEeCCCCHHHHHHHHHCCCeeeecccccccccc-----CCCCCceEEecCCCCCCC
Q 025866 75 CVRAFGDLLEIMKSVGPFPD-GVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQ-----KVPSERILLETDAPDALP 148 (247)
Q Consensus 75 ~~~a~~~~l~iLk~~~~~~~-~~I~H~fsGs~~~~~~~l~~G~~~Si~~~i~~~~~~-----~iPldriLlETD~P~~~p 148 (247)
||.|.+++++|+++.+.... ++++|||+|+.+.+++++++|+||||+|.+++.+.. .||++|||+|||+||+.|
T Consensus 155 ~r~a~~d~~eIl~~~~~~~~~~vvvHsFtGs~e~~~~~lk~~~yig~~g~~~k~~e~~~vlr~iP~erlllETDsP~~~p 234 (296)
T KOG3020|consen 155 CRSAHEDLLEILKRFLPECHKKVVVHSFTGSAEEAQKLLKLGLYIGFTGCSLKTEENLEVLRSIPLERLLLETDSPYCGP 234 (296)
T ss_pred chhhhHHHHHHHHHhccccCCceEEEeccCCHHHHHHHHHccEEecccceeeechhhHHHHhhCCHhHeeeccCCccccC
Confidence 99999999999999976545 789999999999999999999999999988765422 299999999999999999
Q ss_pred chh-hccccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCCCcccCcchhHHHHHHHHHHccCCCHHHHHHH
Q 025866 149 KAE-LNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAEL 227 (247)
Q Consensus 149 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n~P~~l~~v~~~iA~~~~~s~e~l~~~ 227 (247)
++. ...++++.. ++.+..+...+|+|+++..+++.+|++++++.++++++
T Consensus 235 k~~~~~~~~~~~~-----------------------------~~~~~~~~~~~neP~~~~~~~e~va~~k~~~~ee~~~~ 285 (296)
T KOG3020|consen 235 KPSSHAGPKYVKT-----------------------------LFSESYPLKGRNEPCNVLQVAEVVAEAKDLDLEEVAEA 285 (296)
T ss_pred Cccccccchhhhh-----------------------------hhhhhccccccCCchHHHHHHHHHHHhhcCCHHHHHHH
Confidence 763 222222211 01112233589999999999999999999999999999
Q ss_pred HHHHHHHhhCC
Q 025866 228 SYRNAIRLFSY 238 (247)
Q Consensus 228 ~~~N~~~~f~~ 238 (247)
+++|++|+|++
T Consensus 286 ~~~Nt~rl~~~ 296 (296)
T KOG3020|consen 286 TYENTIRLFKL 296 (296)
T ss_pred HHHHHHHHhcC
Confidence 99999999974
No 7
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=100.00 E-value=4.4e-35 Score=255.88 Aligned_cols=188 Identities=35% Similarity=0.457 Sum_probs=162.8
Q ss_pred eeeecccccCCCChhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecccHHHH
Q 025866 3 WVCFIFRFVQERTPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDL 82 (247)
Q Consensus 3 ~~g~hP~~~~~~~~~~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~~~ 82 (247)
++|+|||++.......++.+++++...++++|||||+|++... ...+.|.++|++|+++|+++++||++|++++..++
T Consensus 58 ~~GihP~~~~~~~~~~~~~l~~~l~~~~~~~iGEiGld~~~~~--~~~~~q~~~~~~~~~~a~~~~~pv~iH~~~~~~~~ 135 (252)
T TIGR00010 58 AVGVHPLDVDDDTKEDIKELERLAAHPKVVAIGETGLDYYKAD--EYKRRQEEVFRAQLQLAEELNLPVIIHARDAEEDV 135 (252)
T ss_pred EEEeCcchhhcCCHHHHHHHHHHccCCCEEEEEecccCcCCCC--CCHHHHHHHHHHHHHHHHHhCCCeEEEecCccHHH
Confidence 6899999988756778899999998888999999999987432 23678999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCCeeeecccccccccc-------CCCCCceEEecCCCCCCCchhhccc
Q 025866 83 LEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQ-------KVPSERILLETDAPDALPKAELNSL 155 (247)
Q Consensus 83 l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~G~~~Si~~~i~~~~~~-------~iPldriLlETD~P~~~p~~~~~~~ 155 (247)
++++++++. ...+|+|||+|+.+.++++++.|+|+|+++.+++.+.. .+|.||||+|||+||+.|.+.+
T Consensus 136 ~~~l~~~~~-~~~~i~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~dril~~TD~p~~~~~~~~--- 211 (252)
T TIGR00010 136 LDILREEKP-KVGGVLHCFTGDAELAKKLLDLGFYISISGIVTFKNAKSLREVVRKIPLERLLVETDSPYLAPVPYR--- 211 (252)
T ss_pred HHHHHhcCC-CCCEEEEccCCCHHHHHHHHHCCCeEeeceeEecCCcHHHHHHHHhCCHHHeEecccCCCCCCCCCC---
Confidence 999999863 34688899999999999999999999999865543321 2899999999999997653221
Q ss_pred cccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCCCcccCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Q 025866 156 FLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRL 235 (247)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~ 235 (247)
| .+|.|.+++.+++.+|.++|++++++.+++++|+.++
T Consensus 212 ---------------------------------~---------~~~~p~~i~~~~~~~a~~~g~~~~~~~~~~~~N~~~~ 249 (252)
T TIGR00010 212 ---------------------------------G---------KRNEPAFVRYTVEAIAEIKGMDVEELAQITTKNAKRL 249 (252)
T ss_pred ---------------------------------C---------CCCCChhHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH
Confidence 2 5789999999999999999999999999999999999
Q ss_pred hCC
Q 025866 236 FSY 238 (247)
Q Consensus 236 f~~ 238 (247)
|++
T Consensus 250 ~~~ 252 (252)
T TIGR00010 250 FGL 252 (252)
T ss_pred hCc
Confidence 975
No 8
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=100.00 E-value=2.6e-34 Score=250.45 Aligned_cols=188 Identities=39% Similarity=0.494 Sum_probs=163.5
Q ss_pred ceeeecccccCCCChhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecccHHH
Q 025866 2 DWVCFIFRFVQERTPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGD 81 (247)
Q Consensus 2 ~~~g~hP~~~~~~~~~~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~~ 81 (247)
.++|+|||++....+..++.+++++....+++|||||||++... .+.+.|.++|+.|+++|+++++||++||+++..+
T Consensus 57 ~~~G~hP~~~~~~~~~~~~~l~~~~~~~~~~~IGeiGld~~~~~--~~~~~q~~~~~~~~~~a~e~~~pv~iH~~~~~~~ 134 (251)
T cd01310 57 AAVGLHPHDADEHVDEDLDLLELLAANPKVVAIGEIGLDYYRDK--SPREVQKEVFRAQLELAKELNLPVVIHSRDAHED 134 (251)
T ss_pred EEEeeCcchhhcCCHHHHHHHHHHhcCCCEEEEEeeecCcCCCC--CCHHHHHHHHHHHHHHHHHhCCCeEEEeeCchHH
Confidence 36899999998877777899999998888999999999988632 3688999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCCeeeeccccccccc-------cCCCCCceEEecCCCCCCCchhhcc
Q 025866 82 LLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKA-------QKVPSERILLETDAPDALPKAELNS 154 (247)
Q Consensus 82 ~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~G~~~Si~~~i~~~~~-------~~iPldriLlETD~P~~~p~~~~~~ 154 (247)
+++++++++. ...+|+|||+|+.++++++++.|+|+|+++.+...+. .++|+||||+|||+|+..+...+
T Consensus 135 ~~~l~~~~~~-~~~~i~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~dril~~TD~p~~~~~~~~-- 211 (251)
T cd01310 135 VLEILKEYGP-PKRGVFHCFSGSAEEAKELLDLGFYISISGIVTFKNANELREVVKEIPLERLLLETDSPYLAPVPFR-- 211 (251)
T ss_pred HHHHHHhcCC-CCCEEEEccCCCHHHHHHHHHcCCEEEeeeeeccCCCHHHHHHHHhCChHHEEEcccCCCCCCCCCC--
Confidence 9999999862 3568899999999999999999999999997654332 13899999999999997653211
Q ss_pred ccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCCCcccCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Q 025866 155 LFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIR 234 (247)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~ 234 (247)
| ..+.|.+++.++..+|+.+|++.+++.++++.|+.+
T Consensus 212 ----------------------------------~---------~~~~~~~~~~~~~~la~~~gl~~e~~~~~~~~N~~~ 248 (251)
T cd01310 212 ----------------------------------G---------KRNEPAYVKHVAEKIAELKGISVEEVAEVTTENAKR 248 (251)
T ss_pred ----------------------------------C---------CCCCChhHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 2 568999999999999999999999999999999999
Q ss_pred hhC
Q 025866 235 LFS 237 (247)
Q Consensus 235 ~f~ 237 (247)
+|+
T Consensus 249 ll~ 251 (251)
T cd01310 249 LFG 251 (251)
T ss_pred HhC
Confidence 985
No 9
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=99.97 E-value=6.5e-30 Score=229.80 Aligned_cols=183 Identities=21% Similarity=0.134 Sum_probs=145.9
Q ss_pred eeeecccccC-----CCChhHH-HHHHHHh----hcC--CceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCc
Q 025866 3 WVCFIFRFVQ-----ERTPNWF-STLKEFF----EIT--PAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRP 70 (247)
Q Consensus 3 ~~g~hP~~~~-----~~~~~~l-~~l~~~l----~~~--~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lp 70 (247)
++|+||+... ....+.+ +.+.+.+ ... ++.+|||||+|+. ..+.|+++|++|+++|+++|+|
T Consensus 78 ~~G~hp~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~i~~~~IGEigld~~------~~~~q~~~f~~~~~lA~~~~~P 151 (293)
T cd00530 78 ATGFYKDAFYPEWVRLRSVEELTDMLIREIEEGIEGTGIKAGIIKEAGGSPA------ITPLEEKVLRAAARAQKETGVP 151 (293)
T ss_pred ecccCCCccChHHHhhCCHHHHHHHHHHHHHhccccCCcCceEEEEeecCCC------CCHHHHHHHHHHHHHHHHHCCe
Confidence 5899998753 1121222 1122122 223 3467999999983 2489999999999999999999
Q ss_pred eEEeecc---cHHHHHHHHHhcCCCCCc-EEEEeC-CCCHHHHHHHHHCCCeeeeccccccc---------ccc------
Q 025866 71 ASIHCVR---AFGDLLEIMKSVGPFPDG-VIIHSY-LGSAEMVPELSKLGAYFSFSGFLMSM---------KAQ------ 130 (247)
Q Consensus 71 v~lH~~~---a~~~~l~iLk~~~~~~~~-~I~H~f-sGs~~~~~~~l~~G~~~Si~~~i~~~---------~~~------ 130 (247)
|++|+++ +..+++++|++.+..+.+ +|.||| +++.+.+++++++|+|+||++..++. +.+
T Consensus 152 v~iH~~~~~~~~~~~l~~l~~~g~~~~~~vi~H~~~~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (293)
T cd00530 152 ISTHTQAGLTMGLEQLRILEEEGVDPSKVVIGHLDRNDDPDYLLKIAALGAYLEFDGIGKDKIFGYPSDETRADAVKALI 231 (293)
T ss_pred EEEcCCCCccccHHHHHHHHHcCCChhheEEeCCCCCCCHHHHHHHHhCCCEEEeCCCCcccccCCCCHHHHHHHHHHHH
Confidence 9999997 789999999988754444 577999 78999999999999999999876543 211
Q ss_pred -CCCCCceEEecCCCCCCCchhhccccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCCCcccCcchhHHHH
Q 025866 131 -KVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNV 209 (247)
Q Consensus 131 -~iPldriLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n~P~~l~~v 209 (247)
..|+||||+|||+|++.|.+.+ | .+|.|.++..+
T Consensus 232 ~~~~~d~ill~TD~p~~~~~~~~------------------------------------~---------~~~~~~~~~~~ 266 (293)
T cd00530 232 DEGYGDRLLLSHDVFRKSYLEKR------------------------------------Y---------GGHGYDYILTR 266 (293)
T ss_pred HCCCcCCEEEeCCcCchhhhhhc------------------------------------c---------CCCChHHHHHH
Confidence 2799999999999998765432 2 57899999999
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHHHhh
Q 025866 210 LDYVASLLDMTKEELAELSYRNAIRLF 236 (247)
Q Consensus 210 ~~~iA~~~~~s~e~l~~~~~~N~~~~f 236 (247)
+..+++.+|++.+++.+++++|+.++|
T Consensus 267 ~~~~~~~~g~~~e~i~~~~~~N~~~lf 293 (293)
T cd00530 267 FIPRLRERGVTEEQLDTILVENPARFL 293 (293)
T ss_pred HHHHHHHcCCCHHHHHHHHHHCHHHhC
Confidence 999999999999999999999999987
No 10
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=99.94 E-value=3e-26 Score=198.66 Aligned_cols=173 Identities=28% Similarity=0.381 Sum_probs=148.2
Q ss_pred eeeecccccCCCChhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecc-----
Q 025866 3 WVCFIFRFVQERTPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVR----- 77 (247)
Q Consensus 3 ~~g~hP~~~~~~~~~~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~----- 77 (247)
++|.||..++...+..++.|++++.+..++||||||||+.+ +..+++|+.||+||++++.||+||+++
T Consensus 69 avGvHPr~iP~e~~~~l~~L~~~l~~e~VvAiGEiGLe~~t-------~~E~evf~~QL~LA~e~dvPviVHTPr~nK~e 141 (254)
T COG1099 69 AVGVHPRAIPPELEEVLEELEELLSNEDVVAIGEIGLEEAT-------DEEKEVFREQLELARELDVPVIVHTPRRNKKE 141 (254)
T ss_pred EeccCCCCCCchHHHHHHHHHhhcccCCeeEeeecccccCC-------HHHHHHHHHHHHHHHHcCCcEEEeCCCCcchh
Confidence 68999999998788889999999998889999999999875 458899999999999999999999997
Q ss_pred cHHHHHHHHHhcCCCCCcEEE-EeCCCCHHHHHHHHHCCCeeeecccc---cccccc----CCCCCceEEecCCCCCCCc
Q 025866 78 AFGDLLEIMKSVGPFPDGVII-HSYLGSAEMVPELSKLGAYFSFSGFL---MSMKAQ----KVPSERILLETDAPDALPK 149 (247)
Q Consensus 78 a~~~~l~iLk~~~~~~~~~I~-H~fsGs~~~~~~~l~~G~~~Si~~~i---~~~~~~----~iPldriLlETD~P~~~p~ 149 (247)
++..+++++.+.+..+..+++ |+ +.+++...++.+||.|++-.. +-..+. +...+||++.||+.+.
T Consensus 142 ~t~~ildi~~~~~l~~~lvvIDH~---N~etv~~vld~e~~vGlTvqPgKlt~~eAveIV~ey~~~r~ilnSD~~s~--- 215 (254)
T COG1099 142 ATSKILDILIESGLKPSLVVIDHV---NEETVDEVLDEEFYVGLTVQPGKLTVEEAVEIVREYGAERIILNSDAGSA--- 215 (254)
T ss_pred HHHHHHHHHHHcCCChhheehhcc---cHHHHHHHHhccceEEEEecCCcCCHHHHHHHHHHhCcceEEEecccccc---
Confidence 467899999999877766666 87 699999999999999997432 212222 2567999999999763
Q ss_pred hhhccccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCCCcccCcchhHHHHHHHHHHccCCCHHHHHHHHH
Q 025866 150 AELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSY 229 (247)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~ 229 (247)
...|..+|+++-.+ +.+|++.+++.+..+
T Consensus 216 --------------------------------------------------~sd~lavprtal~m-~~~gv~~~~i~kV~~ 244 (254)
T COG1099 216 --------------------------------------------------ASDPLAVPRTALEM-EERGVGEEEIEKVVR 244 (254)
T ss_pred --------------------------------------------------cccchhhhHHHHHH-HHhcCCHHHHHHHHH
Confidence 34688999999888 789999999999999
Q ss_pred HHHHHhhCCC
Q 025866 230 RNAIRLFSYE 239 (247)
Q Consensus 230 ~N~~~~f~~~ 239 (247)
+|+.++|++.
T Consensus 245 ~NA~~~~~l~ 254 (254)
T COG1099 245 ENALSFYGLS 254 (254)
T ss_pred HHHHHHhCcC
Confidence 9999999974
No 11
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=99.80 E-value=4e-19 Score=157.83 Aligned_cols=185 Identities=19% Similarity=0.200 Sum_probs=145.7
Q ss_pred eeeecccccCCC-------------ChhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCC
Q 025866 3 WVCFIFRFVQER-------------TPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKR 69 (247)
Q Consensus 3 ~~g~hP~~~~~~-------------~~~~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~l 69 (247)
-+|.||-.+.-. ...-++...+++.+++++||||+|.++|... ...++...++|+..+++|++.|+
T Consensus 81 vvGvHPaE~~~l~e~~~~peea~e~m~~~lelA~k~v~eg~avaiGEvGrPHypVs-~~v~~~~n~vl~~a~elA~dvdc 159 (285)
T COG1831 81 VVGVHPAEVSRLAEAGRSPEEALEEMRHALELAAKLVEEGKAVAIGEVGRPHYPVS-EEVWEASNEVLEYAMELAKDVDC 159 (285)
T ss_pred EeccCHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHhccceeeeeccCCCCCCCC-HHHHHHHHHHHHHHHHHhhcCCC
Confidence 479999655421 1233677778888899999999999999763 55688999999999999999999
Q ss_pred ceEEeecccH----HHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCCeeeecccccc-ccccCCCCCceEEecCCC
Q 025866 70 PASIHCVRAF----GDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMS-MKAQKVPSERILLETDAP 144 (247)
Q Consensus 70 pv~lH~~~a~----~~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~G~~~Si~~~i~~-~~~~~iPldriLlETD~P 144 (247)
||+||+.+.. .++-+++++.|..+.++|.|.-++.. ..+-..|+|.|++..-.. ..+.+.+ .|+|+|||+-
T Consensus 160 ~vqLHtes~~~~~~~~i~~~ak~~G~~~~~VVkHha~p~v---~~~~~~Gi~pSV~asr~~v~~a~~~g-~~FmmETDyI 235 (285)
T COG1831 160 AVQLHTESLDEETYEEIAEMAKEAGIKPYRVVKHHAPPLV---LKCEEVGIFPSVPASRKNVEDAAELG-PRFMMETDYI 235 (285)
T ss_pred cEEEecCCCChHHHHHHHHHHHHhCCCcceeEeecCCccc---hhhhhcCcCCcccccHHHHHHHHhcC-CceEeecccc
Confidence 9999999864 46778999999877788888875543 334448999999864311 1222344 6799999999
Q ss_pred CCCCchhhccccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCCCcccCcchhHHHHHHHHHHccCCCHHHH
Q 025866 145 DALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEEL 224 (247)
Q Consensus 145 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n~P~~l~~v~~~iA~~~~~s~e~l 224 (247)
+....| | ..-.|.++|+.++++.+....+.|.+
T Consensus 236 DDp~Rp--------------------------------------g---------avL~PktVPrr~~~i~~~g~~~ee~v 268 (285)
T COG1831 236 DDPRRP--------------------------------------G---------AVLGPKTVPRRTREILEKGDLTEEDV 268 (285)
T ss_pred cCcccC--------------------------------------C---------CcCCccchhHHHHHHHHhcCCcHHHH
Confidence 975433 2 56779999999999989888899999
Q ss_pred HHHHHHHHHHhhCCC
Q 025866 225 AELSYRNAIRLFSYE 239 (247)
Q Consensus 225 ~~~~~~N~~~~f~~~ 239 (247)
.++..+|..++|++.
T Consensus 269 y~i~~E~pe~VYg~~ 283 (285)
T COG1831 269 YRIHVENPERVYGIE 283 (285)
T ss_pred HHHHHhCHHHHhCcc
Confidence 999999999999974
No 12
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.
Probab=99.75 E-value=8.4e-18 Score=156.14 Aligned_cols=171 Identities=21% Similarity=0.249 Sum_probs=130.8
Q ss_pred eeeccc-ccCCCChhHHHHHHHHhhcCC--ceE---------EEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCce
Q 025866 4 VCFIFR-FVQERTPNWFSTLKEFFEITP--AAA---------VGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPA 71 (247)
Q Consensus 4 ~g~hP~-~~~~~~~~~l~~l~~~l~~~~--~~a---------IGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv 71 (247)
.|.||. +..+.....++.+.+++...+ +++ |||+|||- .-|.+|+..+ .+++||
T Consensus 116 ~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~vv~~~~~~t~~~i~E~gl~~-------------~~~~~~l~~~-~~~~pv 181 (365)
T TIGR03583 116 IGLVAQDELADLSNLDASAVKQAVERYPDFIVGLKARMSKSVVGDNGIEP-------------LEIAKQIQQE-NLELPL 181 (365)
T ss_pred ccccChhhhhChHHhHHHHHHHHHHhCcCcEEEEEEeecccccccCCcCH-------------HHHHHHHHHh-cCCCcE
Confidence 377863 545545556777887776543 444 79999972 1255577666 799999
Q ss_pred EEeecccHHHHHHHHHhcCCCCCcEEEEeCCCCH-----------HHHHHHHHCCCeeeec-cccccc--cccCCCCCce
Q 025866 72 SIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSA-----------EMVPELSKLGAYFSFS-GFLMSM--KAQKVPSERI 137 (247)
Q Consensus 72 ~lH~~~a~~~~l~iLk~~~~~~~~~I~H~fsGs~-----------~~~~~~l~~G~~~Si~-~~i~~~--~~~~iPldri 137 (247)
++|++++..+..++++.... ..++.|||+|+. +.++..++.|+|++++ |..++. ...++..+++
T Consensus 182 ~vH~~~a~~~~~~i~~~~~~--g~~~~H~fng~~~~~~r~~g~~~~~~~~~l~~G~i~d~~hg~~~~~~~~~~~~~~~~~ 259 (365)
T TIGR03583 182 MVHIGSAPPELDEILALMEK--GDVLTHCFNGKPNGILRETGEVKPSVLEAYNRGVILDVGHGTASFSFHVAEKAKRAGI 259 (365)
T ss_pred EEEeCCCccCHHHHHHHhcC--CCeeeeeecCCCCCCCCCcchHHHHHHHHHhCeEEEEeCCCCCCchHHHHHHHHhCCC
Confidence 99999999888888887532 136889999998 8899999999999998 766553 1122333678
Q ss_pred EEecCCCCCCCchhhccccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCCCcccCcchh-HHHHHHHHHHc
Q 025866 138 LLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPAN-IHNVLDYVASL 216 (247)
Q Consensus 138 LlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n~P~~-l~~v~~~iA~~ 216 (247)
++|||+||+.. + | .+|.|.. +..+++.++ .
T Consensus 260 ~~~td~~d~~~---~------------------------------------~---------~~~gp~~~l~~~~~~~~-~ 290 (365)
T TIGR03583 260 FPDTISTDIYI---R------------------------------------N---------RINGPVYSLATVMSKFL-A 290 (365)
T ss_pred CCccccccccc---C------------------------------------C---------CccCccccHHHHHHHHH-H
Confidence 99999999731 1 2 5788888 999999998 5
Q ss_pred cCCCHHHHHHHHHHHHHHhhCCC
Q 025866 217 LDMTKEELAELSYRNAIRLFSYE 239 (247)
Q Consensus 217 ~~~s~e~l~~~~~~N~~~~f~~~ 239 (247)
+|++++++.+.++.|..++|+++
T Consensus 291 ~g~~~~ea~~~~t~npa~~~gl~ 313 (365)
T TIGR03583 291 LGYSLEEVIEKVTKNAAEILKLT 313 (365)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCC
Confidence 89999999999999999999996
No 13
>PRK09875 putative hydrolase; Provisional
Probab=99.34 E-value=1.2e-10 Score=106.43 Aligned_cols=181 Identities=16% Similarity=0.171 Sum_probs=124.3
Q ss_pred ecccccCCCChh-----HHHHHHHHhhcC--CceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeeccc
Q 025866 6 FIFRFVQERTPN-----WFSTLKEFFEIT--PAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRA 78 (247)
Q Consensus 6 ~hP~~~~~~~~~-----~l~~l~~~l~~~--~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a 78 (247)
+||.++...+.+ .++++.+.+... +.-.|||||.++... .+.++++|+++.+.+++.|+||++|+...
T Consensus 88 ~~p~~~~~~~~e~la~~~i~ei~~Gi~gt~ikaGvIGeiG~~~~~i-----t~~E~kvl~Aaa~a~~~TG~pi~~Ht~~~ 162 (292)
T PRK09875 88 FFPEHVATRSVQELAQEMVDEIEQGIDGTELKAGIIAEIGSSEGKI-----TPLEEKVFIAAALAHNQTGRPISTHTSFS 162 (292)
T ss_pred cCCHHHhcCCHHHHHHHHHHHHHHhhccCCCcccEEEEEecCCCCC-----CHHHHHHHHHHHHHHHHHCCcEEEcCCCc
Confidence 466666655433 345555555432 334699999998531 26788999999999999999999998653
Q ss_pred --HHHHHHHHHhcCCCCCcEEE-EeC-CCCHHHHHHHHHCCCeeeecccc--c-ccccc---------CCC-CCceEEec
Q 025866 79 --FGDLLEIMKSVGPFPDGVII-HSY-LGSAEMVPELSKLGAYFSFSGFL--M-SMKAQ---------KVP-SERILLET 141 (247)
Q Consensus 79 --~~~~l~iLk~~~~~~~~~I~-H~f-sGs~~~~~~~l~~G~~~Si~~~i--~-~~~~~---------~iP-ldriLlET 141 (247)
..+++++|++.|..+.++++ |.- +.+.+..++++++|+|++|-..- . ++... +-. .|||||=+
T Consensus 163 ~~g~e~l~il~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~~G~~l~fD~~g~~~~~pd~~r~~~i~~L~~~Gy~drilLS~ 242 (292)
T PRK09875 163 TMGLEQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGKNSYYPDEKRIAMLHALRDRGLLNRVMLSM 242 (292)
T ss_pred cchHHHHHHHHHcCcCcceEEEeCCCCCCCHHHHHHHHHcCCEEEeccCCCcccCCHHHHHHHHHHHHhcCCCCeEEEeC
Confidence 45779999999987778877 873 34788999999999999985311 1 11111 124 79999988
Q ss_pred CCCCCCCchhhccccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCCCcccCcchhHHHHHHHHHHccCCCH
Q 025866 142 DAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTK 221 (247)
Q Consensus 142 D~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n~P~~l~~v~~~iA~~~~~s~ 221 (247)
|..-..+ .. +.| ......-+..++-.+ .-+|++.
T Consensus 243 D~~~~~~--~~----------------------------------~~g---------g~G~~~i~~~~ip~L-~~~Gvse 276 (292)
T PRK09875 243 DITRRSH--LK----------------------------------ANG---------GYGYDYLLTTFIPQL-RQSGFSQ 276 (292)
T ss_pred CCCCccc--cc----------------------------------ccC---------CCChhHHHHHHHHHH-HHcCCCH
Confidence 8732111 00 001 122233455555555 4469999
Q ss_pred HHHHHHHHHHHHHhhC
Q 025866 222 EELAELSYRNAIRLFS 237 (247)
Q Consensus 222 e~l~~~~~~N~~~~f~ 237 (247)
+++.+.+.+|..|+|.
T Consensus 277 ~~I~~m~~~NP~r~~~ 292 (292)
T PRK09875 277 ADVDVMLRENPSQFFQ 292 (292)
T ss_pred HHHHHHHHHCHHHHhC
Confidence 9999999999999985
No 14
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=99.32 E-value=4.8e-11 Score=113.49 Aligned_cols=157 Identities=16% Similarity=0.150 Sum_probs=115.1
Q ss_pred HHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecccH-HHHHHHHHhcCCCCCcE
Q 025866 18 WFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAF-GDLLEIMKSVGPFPDGV 96 (247)
Q Consensus 18 ~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~-~~~l~iLk~~~~~~~~~ 96 (247)
.++.+.++++.+.++++||+ +||.... . ..+.|.+++++|+++++||.+|+++.. .++..+++ .+...
T Consensus 91 ~~~~i~~l~~~~~vvglgE~-md~~~v~-----~-~~~~l~~~i~~A~~~g~~v~~Ha~g~~~~~L~a~l~-aGi~~--- 159 (422)
T cd01295 91 TAEDIKELLEHPEVVGLGEV-MDFPGVI-----E-GDDEMLAKIQAAKKAGKPVDGHAPGLSGEELNAYMA-AGIST--- 159 (422)
T ss_pred CHHHHHHHhcCCCCcEEEEe-ccCcccc-----C-CcHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHH-cCCCC---
Confidence 37888888887789999999 9986321 1 224788999999999999999999977 55666665 44311
Q ss_pred EEEeCCCCHHHHHHHHHCCCeeeeccccccccc----cCCC---CCceEEecCCCCCCCchhhccccccCCCCCCccccc
Q 025866 97 IIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKA----QKVP---SERILLETDAPDALPKAELNSLFLVDGDPSLPQELS 169 (247)
Q Consensus 97 I~H~fsGs~~~~~~~l~~G~~~Si~~~i~~~~~----~~iP---ldriLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~ 169 (247)
-| ++++.+.+.+.+++|+|+++.+....... ..+| ..+++++||+|...+..
T Consensus 160 -dH-~~~~~eea~e~l~~G~~i~i~~g~~~~~~~~~~~~l~~~~~~~i~l~TD~~~~~~~~------------------- 218 (422)
T cd01295 160 -DH-EAMTGEEALEKLRLGMYVMLREGSIAKNLEALLPAITEKNFRRFMFCTDDVHPDDLL------------------- 218 (422)
T ss_pred -Cc-CCCcHHHHHHHHHCCCEEEEECcccHhhHHHHHHhhhhccCCeEEEEcCCCCchhhh-------------------
Confidence 15 77888999999999999999853322211 1255 58999999998432110
Q ss_pred ccccCCCCCCCCCCcccccCCCCCCCCCcccCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCC
Q 025866 170 AKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 239 (247)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~ 239 (247)
....+..+++ +|..+|++++++.+..+.|+-++|++.
T Consensus 219 --------------------------------~~g~~~~v~r-~a~~~g~s~~eal~~aT~n~A~~~gl~ 255 (422)
T cd01295 219 --------------------------------SEGHLDYIVR-RAIEAGIPPEDAIQMATINPAECYGLH 255 (422)
T ss_pred --------------------------------hcchHHHHHH-HHHHcCCCHHHHHHHHhHHHHHHcCCC
Confidence 0114566665 456689999999999999999999983
No 15
>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.32 E-value=1.8e-11 Score=112.81 Aligned_cols=132 Identities=21% Similarity=0.257 Sum_probs=96.6
Q ss_pred HHHHHHHHHHcCCceEEeecccHHHHHHHHHhcCCCCCcEEEEeCCCCH-----------HHHHHHHHCCCeeeec-cc-
Q 025866 57 FRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSA-----------EMVPELSKLGAYFSFS-GF- 123 (247)
Q Consensus 57 f~~qL~lA~~~~lpv~lH~~~a~~~~l~iLk~~~~~~~~~I~H~fsGs~-----------~~~~~~l~~G~~~Si~-~~- 123 (247)
+++++++|+++++||++|++++..++.++++.... ...++|||+|+. +.++++++.|+||+++ |.
T Consensus 151 l~~~~~~a~~~~~pi~vH~~~~~~~~~~~~~~l~~--g~~~~H~~~g~~~~~~~~~~~~~~~~~~~~~~G~~~d~~~G~~ 228 (338)
T cd01307 151 LELAKKIAKEADLPLMVHIGSPPPILDEVVPLLRR--GDVLTHCFNGKPNGIVDEEGEVLPLVRRARERGVIFDVGHGTA 228 (338)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHhcC--CCEEEeccCCCCCCCCCCCCcHHHHHHHHHhCCEEEEeCCCCC
Confidence 77999999999999999999988777777765532 246889999986 7899999999999988 43
Q ss_pred -cccccccCCCCCceEEecCCCCCCCchhhccccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCCCcccCc
Q 025866 124 -LMSMKAQKVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNH 202 (247)
Q Consensus 124 -i~~~~~~~iPldriLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n~ 202 (247)
.++....++-...++.+|+++|+..+ + .+|.
T Consensus 229 ~~~~~~~~~l~~~G~~~~~lstD~~~~---------------------------------------~---------~~~~ 260 (338)
T cd01307 229 SFSFRVARAAIAAGLLPDTISSDIHGR---------------------------------------N---------RTNG 260 (338)
T ss_pred chhHHHHHHHHHCCCCCeeecCCcccc---------------------------------------C---------CCCC
Confidence 12222222112334444555554211 1 2356
Q ss_pred chh-HHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCC
Q 025866 203 PAN-IHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 239 (247)
Q Consensus 203 P~~-l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~ 239 (247)
|.+ +..+++.+ ..+|++.+++.++++.|..++|++.
T Consensus 261 p~~~l~~~l~~l-~~~gi~~ee~~~~~T~NpA~~lgl~ 297 (338)
T cd01307 261 PVYALATTLSKL-LALGMPLEEVIEAVTANPARMLGLA 297 (338)
T ss_pred ccccHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHcCCC
Confidence 766 57888877 5689999999999999999999984
No 16
>PRK09237 dihydroorotase; Provisional
Probab=99.02 E-value=3.4e-09 Score=99.01 Aligned_cols=161 Identities=17% Similarity=0.218 Sum_probs=105.7
Q ss_pred hHHHHHHHHhhc--CCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecccHHHHHHHHHhcCCCCC
Q 025866 17 NWFSTLKEFFEI--TPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPD 94 (247)
Q Consensus 17 ~~l~~l~~~l~~--~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~~~l~iLk~~~~~~~ 94 (247)
-..+.+.+++.+ ..+++++| ++++...... .. ..++....+|++.++||.+|+++......++++-... .
T Consensus 134 ~~~~~~~~~~~~~~~~v~glk~-~~~~~v~~~~-~~----~~~~~~~~~a~~~g~~v~~H~~~~~~~~~~l~~~l~~--g 205 (380)
T PRK09237 134 IDADAVAEAVKRNPDFIVGIKA-RMSSSVVGDN-GI----EPLELAKAIAAEANLPLMVHIGNPPPSLEEILELLRP--G 205 (380)
T ss_pred CCHHHHHHHHHhCcCcEEEEEE-EEeccccccc-CC----chHHHHHHHHHhcCCCEEEEcCCCCCCHHHHHhhccC--C
Confidence 356788888874 34778875 3554311000 01 2345556667799999999998865444444443322 2
Q ss_pred cEEEEeCCCCH-----------HHHHHHHHCCCeeeec-cc--cccccccC-----CCCCceEEecCCCCCCCchhhccc
Q 025866 95 GVIIHSYLGSA-----------EMVPELSKLGAYFSFS-GF--LMSMKAQK-----VPSERILLETDAPDALPKAELNSL 155 (247)
Q Consensus 95 ~~I~H~fsGs~-----------~~~~~~l~~G~~~Si~-~~--i~~~~~~~-----iPldriLlETD~P~~~p~~~~~~~ 155 (247)
.++.|||+|+. +.++++++.|+|++|+ |. ..+++..+ +..+ .++||. .+.
T Consensus 206 ~~~~H~~~~~~~~~~~~~~~~~~~a~~~l~~G~~~~ig~g~~~~~~~~~~~l~~~g~~~~--~l~tD~---~~~------ 274 (380)
T PRK09237 206 DILTHCFNGKPNRILDEDGELRPSVLEALERGVRLDVGHGTASFSFKVAEAAIAAGILPD--TISTDI---YCR------ 274 (380)
T ss_pred CEEEecCCCCCCCccCCCCcchHHHHHHHHCCEEEEecCCCCcccHHHHHHHHHCCCCce--EEECCC---CCC------
Confidence 36889999988 7999999999999997 32 22233222 2222 467764 221
Q ss_pred cccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCCCcccCcchh-HHHHHHHHHHccCCCHHHHHHHHHHHHHH
Q 025866 156 FLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPAN-IHNVLDYVASLLDMTKEELAELSYRNAIR 234 (247)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n~P~~-l~~v~~~iA~~~~~s~e~l~~~~~~N~~~ 234 (247)
...|.|.. +..+++.+++ +|++++++.+.++.|.-+
T Consensus 275 ------------------------------------------~~~~~~~~~l~~~~~~~~~-~g~~~~~al~~aT~n~A~ 311 (380)
T PRK09237 275 ------------------------------------------NRINGPVYSLATVMSKFLA-LGMPLEEVIAAVTKNAAD 311 (380)
T ss_pred ------------------------------------------CcccchHhHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH
Confidence 02445555 8888887765 799999999999999999
Q ss_pred hhCCC
Q 025866 235 LFSYE 239 (247)
Q Consensus 235 ~f~~~ 239 (247)
+|+++
T Consensus 312 ~lgl~ 316 (380)
T PRK09237 312 ALRLP 316 (380)
T ss_pred HcCCC
Confidence 99984
No 17
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=98.68 E-value=2.5e-07 Score=79.56 Aligned_cols=95 Identities=21% Similarity=0.178 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHcCCceEEeecccHH---HHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCCeeeecccccccc
Q 025866 52 DQVGVFRQQLELAKELKRPASIHCVRAFG---DLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMK 128 (247)
Q Consensus 52 ~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~---~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~G~~~Si~~~i~~~~ 128 (247)
.+.+.|++++++|+++++||.+|+..... .+.++++.......-.+.|++..+.+.++.+.+.|+++++++......
T Consensus 130 ~~~~~~~~~~~~a~~~~~~i~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 209 (275)
T cd01292 130 LSDESLRRVLEEARKLGLPVVIHAGELPDPTRALEDLVALLRLGGRVVIGHVSHLDPELLELLKEAGVSLEVCPLSNYLL 209 (275)
T ss_pred CCcHHHHHHHHHHHHcCCeEEEeeCCcccCccCHHHHHHHHhcCCCEEEECCccCCHHHHHHHHHcCCeEEECCcccccc
Confidence 35689999999999999999999987653 244444433211223456999998999999999999999998653321
Q ss_pred ---cc------C-C-CCCceEEecCCCCC
Q 025866 129 ---AQ------K-V-PSERILLETDAPDA 146 (247)
Q Consensus 129 ---~~------~-i-PldriLlETD~P~~ 146 (247)
.. + + --.++++.||+|..
T Consensus 210 ~~~~~~~~~~~~~~~~g~~~~lgTD~~~~ 238 (275)
T cd01292 210 GRDGEGAEALRRLLELGIRVTLGTDGPPH 238 (275)
T ss_pred cCCcCCcccHHHHHHCCCcEEEecCCCCC
Confidence 11 0 1 12689999999875
No 18
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=98.45 E-value=1.4e-06 Score=80.41 Aligned_cols=154 Identities=21% Similarity=0.253 Sum_probs=100.0
Q ss_pred EEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecccH---HHHHHHHHhcCCCCCcEEE-EeCCC-CHHH
Q 025866 33 AVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAF---GDLLEIMKSVGPFPDGVII-HSYLG-SAEM 107 (247)
Q Consensus 33 aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~---~~~l~iLk~~~~~~~~~I~-H~fsG-s~~~ 107 (247)
.|||+|=... -.+.++++|++....+++.|+||++|+-... .+.+++|++.|..+.++|+ |.-.. +.+.
T Consensus 126 ~Ik~~~~~~~------it~~E~k~lrAaa~A~~~TG~pI~~H~~~g~~~~~e~~~il~e~Gv~~~rvvigH~D~~~D~~y 199 (308)
T PF02126_consen 126 IIKEIGSSNP------ITPLEEKVLRAAARAHKETGAPISTHTGRGTRMGLEQLDILEEEGVDPSRVVIGHMDRNPDLDY 199 (308)
T ss_dssp EEEEEEBTTB------CEHHHHHHHHHHHHHHHHHT-EEEEEESTTGTCHHHHHHHHHHTT--GGGEEETSGGGST-HHH
T ss_pred heeEeeccCC------CCHHHHHHHHHHHHHHHHhCCeEEEcCCCCCcCHHHHHHHHHHcCCChhHeEEeCCCCCCCHHH
Confidence 6888765521 2378999999999999999999999998766 6899999999988888888 87633 5567
Q ss_pred HHHHHHCCCeeeeccc-c-c--ccc---------ccC-------C---CCCceEEecCCCCCCCchhhccccccCCCCCC
Q 025866 108 VPELSKLGAYFSFSGF-L-M--SMK---------AQK-------V---PSERILLETDAPDALPKAELNSLFLVDGDPSL 164 (247)
Q Consensus 108 ~~~~l~~G~~~Si~~~-i-~--~~~---------~~~-------i---PldriLlETD~P~~~p~~~~~~~~~~~~~~~~ 164 (247)
.+++.+.|+|++|-.. . + +.. ..+ + =.+||||=+|.-..... ..
T Consensus 200 ~~~la~~G~~l~~D~~g~~~~g~~~~~~~~~~~d~~ri~~l~~L~~~Gy~~qIlLS~D~~~k~~~-~~------------ 266 (308)
T PF02126_consen 200 HRELADRGVYLEFDTIGREFSGKDKNPRVGYPPDEERIELLKELIEEGYADQILLSHDIGRKSRL-YR------------ 266 (308)
T ss_dssp HHHHHHTT-EEEETTTT-B-TTTTTCHSCTTS-HHHHHHHHHHHHHTTTGGGEEE-HHHESEEGS-SS------------
T ss_pred HHHHHhcCCEEEecCCcccccCcccCccCCCCCHHHHHHHHHHHHHcCCcCcEEEeccccccccc-cc------------
Confidence 8899999999999543 0 0 000 000 1 24899999988551100 00
Q ss_pred cccccccccCCCCCCCCCCcccccCCCCCCCCCcccCcchhH-HHHHHHHHHccCCCHHHHHHHHHHHHHHhhC
Q 025866 165 PQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANI-HNVLDYVASLLDMTKEELAELSYRNAIRLFS 237 (247)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n~P~~l-~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~ 237 (247)
. .| ..... .+| ..++-.+ .-+|++.+++.+++.+|..|+|.
T Consensus 267 -----------~-----------gg--------~g~~~-~~i~~~fiP~L-~~~Gv~~~~i~~ilv~NP~r~lt 308 (308)
T PF02126_consen 267 -----------Y-----------GG--------GGYGY-IYILTRFIPRL-KERGVSEEDIDKILVENPARILT 308 (308)
T ss_dssp -----------C-----------CH--------HHHTT-THHHHTHHHHH-HHTTS-HHHHHHHHTHHHHHHHS
T ss_pred -----------c-----------CC--------CCccH-HHHHHHHHHHH-HHcCCCHHHHHHHHHHCHHHHcC
Confidence 0 00 01111 123 3333344 45899999999999999999984
No 19
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=98.37 E-value=5.2e-06 Score=72.39 Aligned_cols=125 Identities=22% Similarity=0.183 Sum_probs=73.2
Q ss_pred ChhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeec----------cc-HHHHH
Q 025866 15 TPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCV----------RA-FGDLL 83 (247)
Q Consensus 15 ~~~~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~----------~a-~~~~l 83 (247)
.++..+.+++.+.+..+++|. +..+....... +. ......+++|.++|+||.+|+- .+ ...+-
T Consensus 83 ~~~~~~~l~~~~~~~g~~Gv~-l~~~~~~~~~~-~~----~~~~~~~~~~~~~~~pv~~H~g~~~~~~~~~~~~~~~~~~ 156 (273)
T PF04909_consen 83 PEDAVEELERALQELGFRGVK-LHPDLGGFDPD-DP----RLDDPIFEAAEELGLPVLIHTGMTGFPDAPSDPADPEELE 156 (273)
T ss_dssp HHHHHHHHHHHHHTTTESEEE-EESSETTCCTT-SG----HCHHHHHHHHHHHT-EEEEEESHTHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHhccccceeeeE-ecCCCCccccc-cH----HHHHHHHHHHHhhccceeeeccccchhhhhHHHHHHHHHH
Confidence 346688899988888887776 55544322111 11 1116889999999999999954 11 22344
Q ss_pred HHHHhcCCCCCcEEEEeCCCC---HHHHHHHHHC--CCeeeeccccc----cc--cc-------c-CCCCCceEEecCCC
Q 025866 84 EIMKSVGPFPDGVIIHSYLGS---AEMVPELSKL--GAYFSFSGFLM----SM--KA-------Q-KVPSERILLETDAP 144 (247)
Q Consensus 84 ~iLk~~~~~~~~~I~H~fsGs---~~~~~~~l~~--G~~~Si~~~i~----~~--~~-------~-~iPldriLlETD~P 144 (247)
+++.++.. .++|+-+..++ ...+-++++. ++|+-+++... .. .. . ..+.||||.-||+|
T Consensus 157 ~~~~~~P~--l~ii~~H~G~~~~~~~~~~~l~~~~~nvy~d~s~~~~~~~~~~~~~~~~~l~~~~~~~g~drilfGSD~P 234 (273)
T PF04909_consen 157 ELLERFPD--LRIILAHLGGPFPWWEEALRLLDRFPNVYVDLSGIPPFWYFWPPSFDRPFLRRAVDEFGPDRILFGSDYP 234 (273)
T ss_dssp THHHHSTT--SEEEESGGGTTHHHHHHHHHHHHHHTTEEEECHSHHSSEEEETTHHCHHHHHHHHHHHTGGGEEEE--TT
T ss_pred HHHHHhcC--CeEEEecCcccchhHHHHHHHHHhCCcccccccccccccccCcccccHHHHHHHHHHhCCceEEecCCCC
Confidence 67777632 46777434344 3333333332 79988877421 11 00 0 15779999999999
Q ss_pred CCC
Q 025866 145 DAL 147 (247)
Q Consensus 145 ~~~ 147 (247)
+..
T Consensus 235 ~~~ 237 (273)
T PF04909_consen 235 HPD 237 (273)
T ss_dssp SST
T ss_pred CCC
Confidence 964
No 20
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=98.19 E-value=4.2e-05 Score=70.07 Aligned_cols=186 Identities=20% Similarity=0.144 Sum_probs=118.3
Q ss_pred eecccccCCCChhHHHHHHHHhh----cC------CceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEe
Q 025866 5 CFIFRFVQERTPNWFSTLKEFFE----IT------PAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIH 74 (247)
Q Consensus 5 g~hP~~~~~~~~~~l~~l~~~l~----~~------~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH 74 (247)
.+||.|....+ ++.+.+++. ++ +.=.|||+|---.. ....+++|+.....+++.+.|++.|
T Consensus 101 ~~~p~~~~~~~---i~~~ae~~v~ei~~Gi~gT~ikAGiIk~~~~~~~i------Tp~Eek~lrAaA~A~~~Tg~Pi~tH 171 (316)
T COG1735 101 AFHPEYFALRP---IEELAEFVVKEIEEGIAGTGIKAGIIKEAGGSPAI------TPLEEKSLRAAARAHKETGAPISTH 171 (316)
T ss_pred ccchhHHhhCC---HHHHHHHHHHHHHhcccCCccccceeeeccCcccC------CHHHHHHHHHHHHHhhhcCCCeEEe
Confidence 46776666555 333444332 22 33468888754321 2577899999999999999999999
Q ss_pred ecccH--HHHHHHHHhcCCCCCcEEE-EeC-CC-CHHHHHHHHHCCCeeeecccc---ccccccC-C---------CCCc
Q 025866 75 CVRAF--GDLLEIMKSVGPFPDGVII-HSY-LG-SAEMVPELSKLGAYFSFSGFL---MSMKAQK-V---------PSER 136 (247)
Q Consensus 75 ~~~a~--~~~l~iLk~~~~~~~~~I~-H~f-sG-s~~~~~~~l~~G~~~Si~~~i---~~~~~~~-i---------Pldr 136 (247)
+.... -+.+++|.+.|..+.++++ |+- +. +....+.+.++|.|++|-++- .++...+ . =.++
T Consensus 172 t~~gt~g~eq~~il~~egvdl~~v~igH~d~n~dd~~y~~~l~~~Ga~l~fD~iG~d~y~pd~~r~~~~~~l~~~gy~d~ 251 (316)
T COG1735 172 TPAGTMGLEQLRILAEEGVDLRKVSIGHMDPNTDDVYYQKKLADRGAFLEFDRIGKDKYYPDEDRIAPLLELVARGYADL 251 (316)
T ss_pred ccchhhhHHHHHHHHHcCCChhHeeEeccCCCCChHHHHHHHHhcCceEEecccCccccCcHHHhhhhHHHHHHhhHhhh
Confidence 99864 5778999999987777777 886 33 445556677789999997642 2222221 0 1366
Q ss_pred eEEecCCCCCCCchhhccccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCCCcccCcchhHHHHHHHHHHc
Q 025866 137 ILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASL 216 (247)
Q Consensus 137 iLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n~P~~l~~v~~~iA~~ 216 (247)
|++= +.-++.... ++|++. ......+.+..|++..=--++.
T Consensus 252 i~ls-~d~~~~~~~----------------------------------~~~~~~----~~~~~~~g~~~I~~~fIP~Lk~ 292 (316)
T COG1735 252 ILLS-HDDICLSDD----------------------------------VFLKSM----LKANGGWGYGYILNDFIPRLKR 292 (316)
T ss_pred eecc-cchhhhhhh----------------------------------HHHHhh----hhhcCCcccchhhHhhHHHHHH
Confidence 6665 222221100 000000 0002445566777444334478
Q ss_pred cCCCHHHHHHHHHHHHHHhhCC
Q 025866 217 LDMTKEELAELSYRNAIRLFSY 238 (247)
Q Consensus 217 ~~~s~e~l~~~~~~N~~~~f~~ 238 (247)
+|++.+.|...+.+|..|+|.-
T Consensus 293 ~Gvde~~i~~mlvdNP~r~f~~ 314 (316)
T COG1735 293 HGVDEETIDTMLVDNPARLFTA 314 (316)
T ss_pred cCCCHHHHHHHHhhCHHHHhcc
Confidence 9999999999999999999974
No 21
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=97.96 E-value=0.00057 Score=62.54 Aligned_cols=157 Identities=18% Similarity=0.148 Sum_probs=98.8
Q ss_pred hhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecccH------------HHHH
Q 025866 16 PNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAF------------GDLL 83 (247)
Q Consensus 16 ~~~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~------------~~~l 83 (247)
+...+++++.+.+..++++.--+....... . ...+...++.|.++|+||+||+=... -.+-
T Consensus 112 ~~a~~E~er~v~~~gf~g~~l~p~~~~~~~-~------~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~~~~~~~~p~~~~ 184 (293)
T COG2159 112 EAAAEELERRVRELGFVGVKLHPVAQGFYP-D------DPRLYPIYEAAEELGVPVVIHTGAGPGGAGLEKGHSDPLYLD 184 (293)
T ss_pred HHHHHHHHHHHHhcCceEEEecccccCCCC-C------ChHHHHHHHHHHHcCCCEEEEeCCCCCCcccccCCCCchHHH
Confidence 334667777776665555543232222111 1 12388899999999999999997632 1455
Q ss_pred HHHHhcCCCCCcEEE-Ee---CCCCHHHHHHHHH-CCCeeeecccccc-------ccccCCCCCceEEecCCCCCCCchh
Q 025866 84 EIMKSVGPFPDGVII-HS---YLGSAEMVPELSK-LGAYFSFSGFLMS-------MKAQKVPSERILLETDAPDALPKAE 151 (247)
Q Consensus 84 ~iLk~~~~~~~~~I~-H~---fsGs~~~~~~~l~-~G~~~Si~~~i~~-------~~~~~iPldriLlETD~P~~~p~~~ 151 (247)
+++++... .++|+ |+ +.--.+.+..+.. ...|+-.++...+ ....+++.|+||.=||+|+..|.
T Consensus 185 ~va~~fP~--l~IVl~H~G~~~p~~~~a~~~a~~~~nvy~d~s~~~~~~~~~~~~~~~~~~~~dkilFGSD~P~~~~~-- 260 (293)
T COG2159 185 DVARKFPE--LKIVLGHMGEDYPWELEAIELAYAHPNVYLDTSGVRPKYFAPPLLEFLKELGPDKILFGSDYPAIHPE-- 260 (293)
T ss_pred HHHHHCCC--CcEEEEecCCCCchhHHHHHHHHhCCCceeeeeccccccCChHHHHHHHhcccCeEEecCCCCCcCHH--
Confidence 77888743 34555 87 4333333333333 3788888776421 11223789999999999985431
Q ss_pred hccccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCCCcccCcchhHHHHHHHHHHccCCCHHHHHHHHHHH
Q 025866 152 LNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRN 231 (247)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N 231 (247)
.-+..+ ...+++.+...+++++|
T Consensus 261 --------------------------------------------------------~~l~~~-~~l~l~~e~k~kiL~~N 283 (293)
T COG2159 261 --------------------------------------------------------VWLAEL-DELGLSEEVKEKILGEN 283 (293)
T ss_pred --------------------------------------------------------HHHHHH-HhcCCCHHHHHHHHHHh
Confidence 111122 45678889999999999
Q ss_pred HHHhhCCCC
Q 025866 232 AIRLFSYEG 240 (247)
Q Consensus 232 ~~~~f~~~~ 240 (247)
+.|+|++..
T Consensus 284 A~rll~l~~ 292 (293)
T COG2159 284 AARLLGLDP 292 (293)
T ss_pred HHHHhCcCC
Confidence 999999864
No 22
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=97.48 E-value=0.0071 Score=55.48 Aligned_cols=126 Identities=17% Similarity=0.211 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHcCCceEEeeccc--HHHHHHHHHhcCCCCCcEEEEeCCC--CHHHHHHHHHCCCeeeeccccccc-c
Q 025866 54 VGVFRQQLELAKELKRPASIHCVRA--FGDLLEIMKSVGPFPDGVIIHSYLG--SAEMVPELSKLGAYFSFSGFLMSM-K 128 (247)
Q Consensus 54 ~~vf~~qL~lA~~~~lpv~lH~~~a--~~~~l~iLk~~~~~~~~~I~H~fsG--s~~~~~~~l~~G~~~Si~~~i~~~-~ 128 (247)
.+.|.+.+++|+++|+|+.+|+-.. .+++.+.+...|. ..|.|+..- +++.++.+.+.|..+.+.+..... .
T Consensus 171 ~~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~~~~g~---~ri~Hg~~l~~~~~~i~~l~~~gi~v~~cP~Sn~~l~ 247 (324)
T TIGR01430 171 PPDFVRAFAIARELGLHLTVHAGELGGPESVREALDDLGA---TRIGHGVRALEDPELLKRLAQENITLEVCPTSNVALG 247 (324)
T ss_pred HHHHHHHHHHHHHCCCCeEEecCCCCChHHHHHHHHHcCc---hhcchhhhhccCHHHHHHHHHcCceEEECCccccccc
Confidence 4678899999999999999999865 4567777777764 247799876 667888889999999888754221 1
Q ss_pred ---c-cCCCC-------CceEEecCCCCCCCchhhccccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCCC
Q 025866 129 ---A-QKVPS-------ERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPK 197 (247)
Q Consensus 129 ---~-~~iPl-------driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 197 (247)
. ..-|+ =++-+=||.|...
T Consensus 248 ~~~~~~~~pi~~l~~~Gv~v~igTD~~~~~-------------------------------------------------- 277 (324)
T TIGR01430 248 VVKSLAEHPLRRFLEAGVKVTLNSDDPAYF-------------------------------------------------- 277 (324)
T ss_pred ccCCcccChHHHHHHCCCEEEECCCCCccc--------------------------------------------------
Confidence 0 01111 1366777766431
Q ss_pred cccCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhC
Q 025866 198 ETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFS 237 (247)
Q Consensus 198 ~~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~ 237 (247)
. .++.+-+..+++..|++++++.+.+.+.+...|-
T Consensus 278 ----~-~~l~~e~~~a~~~~~l~~~el~~~~~na~~~~f~ 312 (324)
T TIGR01430 278 ----G-SYLTEEYEIAAKHAGLTEEELKQLARNALEGSFL 312 (324)
T ss_pred ----C-CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 0 1577777788888899999988877777777774
No 23
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=97.31 E-value=0.0036 Score=59.52 Aligned_cols=163 Identities=17% Similarity=0.209 Sum_probs=104.5
Q ss_pred cCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcC----Cc--eEEeeccc---HHHHHHHHHhcCCCCCcEEE
Q 025866 28 ITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELK----RP--ASIHCVRA---FGDLLEIMKSVGPFPDGVII 98 (247)
Q Consensus 28 ~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~----lp--v~lH~~~a---~~~~l~iLk~~~~~~~~~I~ 98 (247)
...+++||||=+-.+.-. ..-.+-|.+..+.|+..+ || |++|.=++ .+++++++++.. +..
T Consensus 149 ~d~iiG~~~ia~sd~r~~-----~~~~~~l~~~~~~~~~~g~~~~~~g~~~vH~g~~~~~l~~l~~~~~~~d-----i~~ 218 (389)
T TIGR01975 149 IDKVIGVGEIAISDHRSA-----QPTVEHLTNMAAEARVGGLLGGKPGIVNFHVGDSKRALQPIYELVENTD-----VPI 218 (389)
T ss_pred ehhhcccceEEEccCcCC-----CCCHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCchhhHHHHHHHHHhcC-----CCh
Confidence 456788888888755421 223455777777788777 99 99998765 456778877753 346
Q ss_pred EeCCCC-----H---HHHHHHHHCCCeeeeccccccc--------------cc--cCCCCCceEEecCCCCCCCchhhcc
Q 025866 99 HSYLGS-----A---EMVPELSKLGAYFSFSGFLMSM--------------KA--QKVPSERILLETDAPDALPKAELNS 154 (247)
Q Consensus 99 H~fsGs-----~---~~~~~~l~~G~~~Si~~~i~~~--------------~~--~~iPldriLlETD~P~~~p~~~~~~ 154 (247)
|+|.+. . +.+-++++.|.++-++...... +. ..+|++|+.+=||+.-..|....
T Consensus 219 ~~f~pth~~r~~~l~~~~i~~~~~gg~iDv~~~~~~~~l~~~~~~~~~~~~~~~~~Gv~~~~i~isSD~~gs~p~~~~-- 296 (389)
T TIGR01975 219 TQFLPTHINRNVPLFEAGLEFAKKGGTIDLTSSIDPQFRKEGEVAPAEGIKKALEAGVPLEKVTFSSDGNGSQPFFDE-- 296 (389)
T ss_pred hheecCccCCCHHHHHHHHHHHHhCCcEEEeCCCCccchhccccChHHHHHHHHHcCCCcceEEEEeCCCCCCCcccc--
Confidence 888764 2 3455666778887776432211 01 11899999999998633221100
Q ss_pred ccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCCCcccCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Q 025866 155 LFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIR 234 (247)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~ 234 (247)
. |... .........+...++.+....+++++++.+.++.|.-+
T Consensus 297 -----~----------------------------g~~~----~~g~g~~~sl~~~~~~lv~~g~ls~~eal~~~T~npA~ 339 (389)
T TIGR01975 297 -----N----------------------------GELT----GLGVGSFETLFEEVREAVKDGDVPLEKALRVITSNVAG 339 (389)
T ss_pred -----c----------------------------cccc----cCCcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 0 1000 00112223456666666666679999999999999999
Q ss_pred hhCCC
Q 025866 235 LFSYE 239 (247)
Q Consensus 235 ~f~~~ 239 (247)
++++.
T Consensus 340 ~Lgl~ 344 (389)
T TIGR01975 340 VLNLT 344 (389)
T ss_pred HhCCC
Confidence 99985
No 24
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=97.25 E-value=0.014 Score=55.14 Aligned_cols=74 Identities=18% Similarity=0.283 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEeecccHHHH-----------------------------HHHHHhcCCCCCc-EEEE
Q 025866 50 FMDQVGVFRQQLELAKELKRPASIHCVRAFGDL-----------------------------LEIMKSVGPFPDG-VIIH 99 (247)
Q Consensus 50 ~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~~~-----------------------------l~iLk~~~~~~~~-~I~H 99 (247)
...+.+.|++..++|+++++|+.+|......+. ++.|.+.|....+ .+.|
T Consensus 158 ~~~s~e~l~~~~~lA~~~g~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~g~~pv~~l~~~g~L~~~~~~~H 237 (381)
T cd01312 158 YSVHPELAQDLIDLAKKLNLPLSTHFLESKEEREWLEESKGWFKHFWESFLKLPKPKKLATAIDFLDMLGGLGTRVSFVH 237 (381)
T ss_pred cccCHHHHHHHHHHHHHcCCeEEEEecCcHHHHHHHHHhccchhhHhhhhcccccccCCCCHHHHHHHcCCCCCCcEEEE
Confidence 356778999999999999999999998765443 3556666644333 4669
Q ss_pred eCCCCHHHHHHHHHCCCeeeeccc
Q 025866 100 SYLGSAEMVPELSKLGAYFSFSGF 123 (247)
Q Consensus 100 ~fsGs~~~~~~~l~~G~~~Si~~~ 123 (247)
|..-+.+.++.+.+.|..++..+.
T Consensus 238 ~~~l~~~~~~~l~~~g~~v~~~P~ 261 (381)
T cd01312 238 CVYANLEEAEILASRGASIALCPR 261 (381)
T ss_pred CCcCCHHHHHHHHHcCCeEEECcc
Confidence 999999999999999999998885
No 25
>PRK09228 guanine deaminase; Provisional
Probab=97.20 E-value=0.018 Score=55.24 Aligned_cols=71 Identities=15% Similarity=0.146 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHc-CCceEEeecccHHHH-------------HHHHHhcCCCCCcE-EEEeCCCCHHHHHHHHHCCCee
Q 025866 54 VGVFRQQLELAKEL-KRPASIHCVRAFGDL-------------LEIMKSVGPFPDGV-IIHSYLGSAEMVPELSKLGAYF 118 (247)
Q Consensus 54 ~~vf~~qL~lA~~~-~lpv~lH~~~a~~~~-------------l~iLk~~~~~~~~~-I~H~fsGs~~~~~~~l~~G~~~ 118 (247)
.+.+++..++|+++ ++|+.+|.-....+. ++.+.+.|....+. +.||..-+.+.++.+.+.|..+
T Consensus 210 ~~~l~~~~~lA~~~~~~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~l~~~G~l~~~~~~~H~~~l~~~~~~~la~~g~~v 289 (433)
T PRK09228 210 PEQLEAAGALAREHPDVWIQTHLSENLDEIAWVKELFPEARDYLDVYERYGLLGPRAVFAHCIHLEDRERRRLAETGAAI 289 (433)
T ss_pred HHHHHHHHHHHHHCCCCceEEeecCChhHHHHHHHHcCCCCCHHHHHHHcCCCCCCeEEEeccCCCHHHHHHHHHcCCeE
Confidence 46899999999998 999999999865554 33455555333444 4599999999999999999999
Q ss_pred eecccc
Q 025866 119 SFSGFL 124 (247)
Q Consensus 119 Si~~~i 124 (247)
++.+..
T Consensus 290 ~~~P~s 295 (433)
T PRK09228 290 AFCPTS 295 (433)
T ss_pred EECCcc
Confidence 988753
No 26
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=97.19 E-value=0.02 Score=53.78 Aligned_cols=70 Identities=20% Similarity=0.167 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHc-CCceEEeecccHHHH-------------HHHHHhcCCCCCcE-EEEeCCCCHHHHHHHHHCCCee
Q 025866 54 VGVFRQQLELAKEL-KRPASIHCVRAFGDL-------------LEIMKSVGPFPDGV-IIHSYLGSAEMVPELSKLGAYF 118 (247)
Q Consensus 54 ~~vf~~qL~lA~~~-~lpv~lH~~~a~~~~-------------l~iLk~~~~~~~~~-I~H~fsGs~~~~~~~l~~G~~~ 118 (247)
.+.+++.+++|+++ ++|+.+|+-....++ ++.+.+.|....+. +.||+.-+.+.++.+.+.|.++
T Consensus 185 ~e~l~~~~~~A~~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~~~l~~~g~lg~~~~~~H~~~~~~~~~~~l~~~g~~v 264 (401)
T TIGR02967 185 PEQLAAAGELAKEYPDVYVQTHLSENKDEIAWVKELFPEAKDYLDVYDHYGLLGRRSVFAHCIHLSDEECQRLAETGAAI 264 (401)
T ss_pred HHHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHcCCCCcHHHHHHHCCCCCCCeEEEecccCCHHHHHHHHHcCCeE
Confidence 36788999999999 999999998654332 44556665433444 5699999999999999999999
Q ss_pred eeccc
Q 025866 119 SFSGF 123 (247)
Q Consensus 119 Si~~~ 123 (247)
++.+.
T Consensus 265 ~~~P~ 269 (401)
T TIGR02967 265 AHCPT 269 (401)
T ss_pred EEChH
Confidence 88874
No 27
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=97.18 E-value=0.014 Score=54.53 Aligned_cols=169 Identities=14% Similarity=0.176 Sum_probs=93.1
Q ss_pred CceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCC---ceEEeecc---cHHHHHHHHHhcCCCCCcEEEEeCCC
Q 025866 30 PAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKR---PASIHCVR---AFGDLLEIMKSVGPFPDGVIIHSYLG 103 (247)
Q Consensus 30 ~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~l---pv~lH~~~---a~~~~l~iLk~~~~~~~~~I~H~fsG 103 (247)
.+.++||+++-.+.... +-+...+...+..+.++..+- |+++|+-. +.+.+.++|++.|.....++.|+..-
T Consensus 151 ~~~g~g~~~~~~~~~~~--~~~~~l~~~~~~a~~~~~~~g~~~~i~vH~~~~~~~l~~v~~~l~~~Gv~~~~~~~~H~~~ 228 (388)
T PRK10657 151 KVIGVGEIAISDHRSSQ--PTVEELARLAAEARVGGLLSGKAGIVHVHMGDGKKGLQPLFELLENTDIPISQFLPTHVNR 228 (388)
T ss_pred hhhCcceeeeccCCCCC--CCHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCchHHHHHHHHHHHhcCCCcceeeCcccCC
Confidence 34568888776553211 112222233333444333332 89999773 23344466777775544455544222
Q ss_pred ---CHHHHHHHHHCCCeeeecc-cc--cccc--c--c--------CCCCCceEEecCCCCCCCchhhccccccCCCCCCc
Q 025866 104 ---SAEMVPELSKLGAYFSFSG-FL--MSMK--A--Q--------KVPSERILLETDAPDALPKAELNSLFLVDGDPSLP 165 (247)
Q Consensus 104 ---s~~~~~~~l~~G~~~Si~~-~i--~~~~--~--~--------~iPldriLlETD~P~~~p~~~~~~~~~~~~~~~~~ 165 (247)
..+...++++.|.++.+.- .. .... . . .+|.||+.+-||.....|. |..+
T Consensus 229 ~~~~~~~~~~~~~~G~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~G~~~d~v~l~tD~~~~~~~-------~~~~----- 296 (388)
T PRK10657 229 NEPLFEQALEFAKKGGVIDLTTSDPDFLGEGEVAPAEALKRALEAGVPLSRVTLSSDGNGSLPK-------FDED----- 296 (388)
T ss_pred CHHHHHHHHHHHHcCCeEEEecCCCcccccCccCHHHHHHHHHHcCCChhheEEECCCCCCCce-------eccC-----
Confidence 2356778888999986652 11 1110 0 0 1567999999997421110 0000
Q ss_pred ccccccccCCCCCCCCCCcccccCCCCCCCCCcccCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCC
Q 025866 166 QELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 239 (247)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~ 239 (247)
|-. .. .......++...+.......+++++++.+..+.|.-++|++.
T Consensus 297 -----------------------g~~---~~-~g~~~~~~l~~~~~~~~~~~gis~~~~l~~aT~npA~~lg~~ 343 (388)
T PRK10657 297 -----------------------GNL---VG-LGVGSVESLLEEVRELVKDEGLPLEDALKPLTSNVARFLKLN 343 (388)
T ss_pred -----------------------CCE---ec-cCcCchhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCC
Confidence 000 00 011122345666665656789999999999999999999985
No 28
>PRK07213 chlorohydrolase; Provisional
Probab=97.06 E-value=0.021 Score=53.57 Aligned_cols=130 Identities=17% Similarity=0.157 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHcCCceEEeecccHHHH-----------HHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCCeeeecc
Q 025866 54 VGVFRQQLELAKELKRPASIHCVRAFGDL-----------LEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSG 122 (247)
Q Consensus 54 ~~vf~~qL~lA~~~~lpv~lH~~~a~~~~-----------l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~G~~~Si~~ 122 (247)
.+.|++.+++|+++++||.+|+-....+. ++.+.+.|.. .+.+.||+.-+.+.++.+.+.|..+.+.+
T Consensus 178 ~~~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~G~~~v~~~~~~G~~-~~~i~H~~~~~~~~i~~la~~g~~v~~~P 256 (375)
T PRK07213 178 DEELKFICKECKREKKIFSIHAAEHKGSVEYSLEKYGMTEIERLINLGFK-PDFIVHATHPSNDDLELLKENNIPVVVCP 256 (375)
T ss_pred HHHHHHHHHHHHHcCCEEEEeeCCchhHHHHHHHHcCCChHHHHHhcCCC-CCEEEECCCCCHHHHHHHHHcCCcEEECC
Confidence 36789999999999999999996654332 3455556654 33678999999999999999999888877
Q ss_pred ccccccccC-CCC-------CceEEecCCCCCCCchhhccccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCC
Q 025866 123 FLMSMKAQK-VPS-------ERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSST 194 (247)
Q Consensus 123 ~i~~~~~~~-iPl-------driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 194 (247)
.....-... -|+ =++.+=||++-.
T Consensus 257 ~sn~~l~~g~~~v~~l~~~Gv~v~lGTD~~~~------------------------------------------------ 288 (375)
T PRK07213 257 RANASFNVGLPPLNEMLEKGILLGIGTDNFMA------------------------------------------------ 288 (375)
T ss_pred cchhhhccCCccHHHHHHCCCEEEEeeCCCCC------------------------------------------------
Confidence 432211111 111 147788886311
Q ss_pred CCCcccCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCC
Q 025866 195 LPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 239 (247)
Q Consensus 195 ~~~~~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~ 239 (247)
+.+ ++.+.++.++...+++++++.+..+.|.-+++++.
T Consensus 289 ------~~~-~~~~e~~~~~~~~~~~~~~~l~~aT~~gA~~lg~~ 326 (375)
T PRK07213 289 ------NSP-SIFREMEFIYKLYHIEPKEILKMATINGAKILGLI 326 (375)
T ss_pred ------chH-hHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHhCCC
Confidence 111 34455555556668999999999999999999885
No 29
>TIGR01178 ade adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.
Probab=96.99 E-value=0.012 Score=58.51 Aligned_cols=157 Identities=15% Similarity=0.168 Sum_probs=106.7
Q ss_pred HHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecccHHHHHHHHHhcCCCCCcEE
Q 025866 18 WFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVI 97 (247)
Q Consensus 18 ~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~~~l~iLk~~~~~~~~~I 97 (247)
..+.+.+++.++.++++||. ++|... .....++++.. +.|++.++++..|++...++-+..+...|.. .
T Consensus 132 ~~~~i~~~~~~~~V~glke~-m~~~~v-----~~~d~~~l~~i-~~a~~~g~~I~gHap~l~~~eL~~~~~aGi~----~ 200 (552)
T TIGR01178 132 TAEDIDELMELDEVLGLAEV-MDYPGV-----INADIEMLNKI-NSARKRNKVIDGHCPGLSGKLLNKYISAGIS----N 200 (552)
T ss_pred CHHHHHHHHcCCCccEEEEE-ecchhh-----cCCCHHHHHHH-HHHHhCCCEEEecCCCCCHHHHHHHHHcCCC----C
Confidence 36788888888889999998 344211 01123445444 6899999999999999888877777776542 3
Q ss_pred EEeCCCCHHHHHHHHHCCCeeeeccccccccccC-------CCCCceEEecCC--CCCCCchhhccccccCCCCCCcccc
Q 025866 98 IHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQK-------VPSERILLETDA--PDALPKAELNSLFLVDGDPSLPQEL 168 (247)
Q Consensus 98 ~H~fsGs~~~~~~~l~~G~~~Si~~~i~~~~~~~-------iPldriLlETD~--P~~~p~~~~~~~~~~~~~~~~~~~~ 168 (247)
-|+- -+.+.+.+-+++|.|+-+-......+... -...++.+=||. |+. ..
T Consensus 201 dHe~-~s~~ea~e~~~~Gm~~~ir~gs~~~n~~~~~~~~~~~~~~~~~l~TD~~~~~~---~~----------------- 259 (552)
T TIGR01178 201 DHES-TSIEEAREKLRLGMKLMIREGSAAKNLEALHPLINEKNCRSLMLCTDDRHVND---IL----------------- 259 (552)
T ss_pred CcCc-CCHHHHHHHHHCCCEEEEeCCccccCHHHHHHHHhhcCCceEEEEeCCCChhH---HH-----------------
Confidence 4754 46888999999999997754322221110 123678888993 211 00
Q ss_pred cccccCCCCCCCCCCcccccCCCCCCCCCcccCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCCC
Q 025866 169 SAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 240 (247)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~~ 240 (247)
..| ++...++.+.+ .|++++++.+..+.|.-+.|++.+
T Consensus 260 ------------------~~g---------------~l~~~v~~ai~-~g~~~~~Al~maT~npA~~lgl~~ 297 (552)
T TIGR01178 260 ------------------NEG---------------HINHIVRRAIE-HGVDPFDALQMASINPAEHFGIDV 297 (552)
T ss_pred ------------------hcC---------------CHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCCC
Confidence 002 46667766554 589999999999999999999964
No 30
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=96.92 E-value=0.032 Score=52.33 Aligned_cols=133 Identities=16% Similarity=0.222 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHcCCceEEeecccHHHHHHHHHhcCCCCCcEEEEeCCCC-----------HHHHHHHHHCCCeeeec-
Q 025866 54 VGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGS-----------AEMVPELSKLGAYFSFS- 121 (247)
Q Consensus 54 ~~vf~~qL~lA~~~~lpv~lH~~~a~~~~l~iLk~~~~~~~~~I~H~fsGs-----------~~~~~~~l~~G~~~Si~- 121 (247)
.+.|.+.+++|+++++|+.+|+..+..+..++++-.+. ...+.|||.+. .+.++++.+.|.++.+.
T Consensus 172 ~~~l~~~~~~A~~~g~~v~iH~~e~~~~~~~~~~~l~~--g~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 249 (379)
T PRK12394 172 LKPLTETLRIANDLRCPVAVHSTHPVLPMKELVSLLRR--GDIIAHAFHGKGSTILTEEGAVLAEVRQARERGVIFDAAN 249 (379)
T ss_pred hHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHhcCC--CCEEEecCCCCCCCcCCCCCCChHHHHHHHhCCeEEEecC
Confidence 57899999999999999999998765555555544432 23567998744 45677788899887443
Q ss_pred ccccc-ccc-cC-C--CCCceEEecCCCCCCCchhhccccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCC
Q 025866 122 GFLMS-MKA-QK-V--PSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLP 196 (247)
Q Consensus 122 ~~i~~-~~~-~~-i--PldriLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 196 (247)
|.... .+. .+ + ..-...|=||.+-..-
T Consensus 250 g~s~~~~~~~~~~l~~G~~~~~lgTD~~~~~~------------------------------------------------ 281 (379)
T PRK12394 250 GRSHFDMNVARRAIANGFLPDIISSDLSTITK------------------------------------------------ 281 (379)
T ss_pred CccccchHHHHHHHHCCCCceEEECCCCCCCc------------------------------------------------
Confidence 32211 011 11 1 1112367888854210
Q ss_pred CcccCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCC
Q 025866 197 KETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 239 (247)
Q Consensus 197 ~~~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~ 239 (247)
..+....+..++..+. -.+++++++.+..+.|.-++|++.
T Consensus 282 --~~~~~~~l~~~~~~~~-~~~~~~~~~~~~at~~~a~~~g~~ 321 (379)
T PRK12394 282 --LAWPVYSLPWVLSKYL-ALGMALEDVINACTHTPAVLMGMA 321 (379)
T ss_pred --ccCccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhCCC
Confidence 0111134566666543 478999999999999999999985
No 31
>PRK09358 adenosine deaminase; Provisional
Probab=96.88 E-value=0.063 Score=49.55 Aligned_cols=66 Identities=14% Similarity=0.187 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHcCCceEEeeccc--HHHHHHHHHhcCCCCCcEEEEeCCC--CHHHHHHHHHCCCeeeeccc
Q 025866 55 GVFRQQLELAKELKRPASIHCVRA--FGDLLEIMKSVGPFPDGVIIHSYLG--SAEMVPELSKLGAYFSFSGF 123 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a--~~~~l~iLk~~~~~~~~~I~H~fsG--s~~~~~~~l~~G~~~Si~~~ 123 (247)
+.|...+++|+++|+|+.+|+-.. ...+.+.+...|. . .|-|++.- +++.++.+.+.|..+++.+.
T Consensus 182 ~~~~~~~~~A~~~g~~~~~H~~E~~~~~~~~~al~~lg~--~-ri~Hg~~l~~~~~~~~~l~~~gi~v~~cP~ 251 (340)
T PRK09358 182 SKFARAFDRARDAGLRLTAHAGEAGGPESIWEALDELGA--E-RIGHGVRAIEDPALMARLADRRIPLEVCPT 251 (340)
T ss_pred HHHHHHHHHHHHCCCCeEEcCCCCCchhHHHHHHHHcCC--c-ccchhhhhccCHHHHHHHHHcCCeEEECCC
Confidence 568899999999999999999853 3456666776664 2 36798865 46678888899999988875
No 32
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=96.86 E-value=0.043 Score=50.69 Aligned_cols=98 Identities=16% Similarity=0.090 Sum_probs=64.6
Q ss_pred HHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecccH-------HHHHHHHHhcCC
Q 025866 19 FSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAF-------GDLLEIMKSVGP 91 (247)
Q Consensus 19 l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~-------~~~l~iLk~~~~ 91 (247)
.+.+++++.... ..+| |+++.. ......+.|++.++.|+++++|+.+|+.... .+.++.+.+.+.
T Consensus 161 ~~~v~~~~~~g~-~~~~--~~~~~~-----~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~g~ 232 (398)
T cd01293 161 EELMREALKMGA-DVVG--GIPPAE-----IDEDGEESLDTLFELAQEHGLDIDLHLDETDDPGSRTLEELAEEAERRGM 232 (398)
T ss_pred HHHHHHHHHhCC-CEEe--CCCCCc-----CCccHHHHHHHHHHHHHHhCCCCEEEeCCCCCcchhHHHHHHHHHHHhCC
Confidence 344555554432 2344 566542 1133468899999999999999999998643 235666777664
Q ss_pred CCCcEEEEeCCCC-------HHHHHHHHHCCCeeeecccc
Q 025866 92 FPDGVIIHSYLGS-------AEMVPELSKLGAYFSFSGFL 124 (247)
Q Consensus 92 ~~~~~I~H~fsGs-------~~~~~~~l~~G~~~Si~~~i 124 (247)
.+...+.|+..-+ .+.++.+.+.|.+++.++..
T Consensus 233 ~~~~~i~H~~~~~~~~~~~~~~~~~~l~~~g~~v~~~p~s 272 (398)
T cd01293 233 QGRVTCSHATALGSLPEAEVSRLADLLAEAGISVVSLPPI 272 (398)
T ss_pred CCCEEeeecchhhcCCHHHHHHHHHHHHHcCCeEEeCCCc
Confidence 4333566997543 24578888899999888743
No 33
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=96.80 E-value=0.13 Score=46.93 Aligned_cols=67 Identities=15% Similarity=0.141 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHcCCceEEeecc--cHHHHHHHHHhcCCCCCcEEEEeCCC--CHHHHHHHHHCCCeeeeccc
Q 025866 54 VGVFRQQLELAKELKRPASIHCVR--AFGDLLEIMKSVGPFPDGVIIHSYLG--SAEMVPELSKLGAYFSFSGF 123 (247)
Q Consensus 54 ~~vf~~qL~lA~~~~lpv~lH~~~--a~~~~l~iLk~~~~~~~~~I~H~fsG--s~~~~~~~l~~G~~~Si~~~ 123 (247)
.+.|...+++|+++|+||.+|+-. +.+.+.+.++..+. ..+.|++.- +++.++.+.+.|..+++.+.
T Consensus 172 ~~~~~~~~~~A~~~g~~v~~H~~E~~~~~~~~~a~~~~g~---~~i~H~~~l~~~~~~~~~l~~~gi~v~~~P~ 242 (325)
T cd01320 172 PEKFVRAFQRAREAGLRLTAHAGEAGGPESVRDALDLLGA---ERIGHGIRAIEDPELVKRLAERNIPLEVCPT 242 (325)
T ss_pred HHHHHHHHHHHHHCCCceEEeCCCCCCHHHHHHHHHHcCC---cccchhhccCccHHHHHHHHHcCCeEEECCC
Confidence 356889999999999999999974 34566777777764 246799877 46688999999999998874
No 34
>PRK06687 chlorohydrolase; Validated
Probab=96.67 E-value=0.087 Score=49.89 Aligned_cols=70 Identities=16% Similarity=0.217 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHcCCceEEeecccHHHHH-----------HHHHhcCCCCCcE-EEEeCCCCHHHHHHHHHCCCeeeec
Q 025866 54 VGVFRQQLELAKELKRPASIHCVRAFGDLL-----------EIMKSVGPFPDGV-IIHSYLGSAEMVPELSKLGAYFSFS 121 (247)
Q Consensus 54 ~~vf~~qL~lA~~~~lpv~lH~~~a~~~~l-----------~iLk~~~~~~~~~-I~H~fsGs~~~~~~~l~~G~~~Si~ 121 (247)
.+.+++.+++|+++++|+.+|+-....+.- +.+.+.+....+. +.||..-+.+.++.+.+.|..++..
T Consensus 195 ~e~l~~~~~~A~~~g~~i~~H~~e~~~e~~~~~~~~g~~~~~~l~~~g~l~~~~~~~H~~~~~~~~~~~la~~g~~v~~~ 274 (419)
T PRK06687 195 RDLLEASLEMAKELNIPLHVHVAETKEESGIILKRYGKRPLAFLEELGYLDHPSVFAHGVELNEREIERLASSQVAIAHN 274 (419)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHCcCHHHHHHHcCCCCCCeEEEEEecCCHHHHHHHHHcCCeEEEC
Confidence 356999999999999999999987654432 3345555433333 5699999999999999999999887
Q ss_pred cc
Q 025866 122 GF 123 (247)
Q Consensus 122 ~~ 123 (247)
+.
T Consensus 275 P~ 276 (419)
T PRK06687 275 PI 276 (419)
T ss_pred cH
Confidence 64
No 35
>PRK08204 hypothetical protein; Provisional
Probab=96.59 E-value=0.058 Score=51.43 Aligned_cols=69 Identities=26% Similarity=0.248 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHcCCceEEeecc----cHHHHHHHHHhcCCCCCc-EEEEeCCCCHHHHHHHHHCCCeeeeccc
Q 025866 55 GVFRQQLELAKELKRPASIHCVR----AFGDLLEIMKSVGPFPDG-VIIHSYLGSAEMVPELSKLGAYFSFSGF 123 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~----a~~~~l~iLk~~~~~~~~-~I~H~fsGs~~~~~~~l~~G~~~Si~~~ 123 (247)
+.+.+.+++|.++|+++.+|+-. ...+.++.+.+.+....+ .+.||+..+.+.++.+.+.|.++++.+.
T Consensus 201 e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~l~~~g~~~~~~~i~H~~~~~~~~~~~la~~g~~v~~~P~ 274 (449)
T PRK08204 201 EVARADFRLARELGLPISMHQGFGPWGATPRGVEQLHDAGLLGPDLNLVHGNDLSDDELKLLADSGGSFSVTPE 274 (449)
T ss_pred HHHHHHHHHHHHcCCcEEEEEcCCCcccCCCHHHHHHHCCCCCCCeEEEecCCCCHHHHHHHHHcCCCEEEChH
Confidence 56778889999999999999943 123456777777644334 4669999999999999999999998874
No 36
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=96.58 E-value=0.46 Score=45.47 Aligned_cols=70 Identities=13% Similarity=0.151 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHcCCceEEeecccHHHHHHH-----------HHhcCCCCCc-EEEEeCCCCHHHHHHHHHCCCeeeec
Q 025866 54 VGVFRQQLELAKELKRPASIHCVRAFGDLLEI-----------MKSVGPFPDG-VIIHSYLGSAEMVPELSKLGAYFSFS 121 (247)
Q Consensus 54 ~~vf~~qL~lA~~~~lpv~lH~~~a~~~~l~i-----------Lk~~~~~~~~-~I~H~fsGs~~~~~~~l~~G~~~Si~ 121 (247)
.+.|++.+++|.++|+|+.+|+-....+.... |.+.+....+ .+.||..-+.+.++.+.+.|..+++.
T Consensus 213 ~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~g~l~~~~~~~H~~~l~~~~~~~la~~g~~v~~~ 292 (451)
T PRK08203 213 RELMRESAALARRLGVRLHTHLAETLDEEAFCLERFGMRPVDYLEDLGWLGPDVWLAHCVHLDDAEIARLARTGTGVAHC 292 (451)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEEeCCCHHHHHHHHhcCCeEEEC
Confidence 36788899999999999999997765544333 3344433334 46699999999999999999999887
Q ss_pred cc
Q 025866 122 GF 123 (247)
Q Consensus 122 ~~ 123 (247)
+.
T Consensus 293 P~ 294 (451)
T PRK08203 293 PC 294 (451)
T ss_pred cH
Confidence 64
No 37
>PRK09045 N-ethylammeline chlorohydrolase; Provisional
Probab=96.57 E-value=0.1 Score=49.92 Aligned_cols=70 Identities=14% Similarity=0.164 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHcCCceEEeecccHHHHHHHH-----------HhcCCCCCc-EEEEeCCCCHHHHHHHHHCCCeeeec
Q 025866 54 VGVFRQQLELAKELKRPASIHCVRAFGDLLEIM-----------KSVGPFPDG-VIIHSYLGSAEMVPELSKLGAYFSFS 121 (247)
Q Consensus 54 ~~vf~~qL~lA~~~~lpv~lH~~~a~~~~l~iL-----------k~~~~~~~~-~I~H~fsGs~~~~~~~l~~G~~~Si~ 121 (247)
.+.+++.+++|.++|+|+.+|+-....++...+ ++.+....+ .+.||..-+.+.++.+.+.|..++..
T Consensus 201 ~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~g~l~~r~~~~H~~~l~~~~~~~la~~g~~i~~~ 280 (443)
T PRK09045 201 DENLERIRTLAEQLDLPIHIHLHETAQEIADSLKQHGQRPLARLARLGLLGPRLIAVHMTQLTDAEIALLAETGCSVVHC 280 (443)
T ss_pred HHHHHHHHHHHHHcCCCEEEeecCcHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEecCCCHHHHHHHHHcCCeEEEC
Confidence 478999999999999999999976554443333 344433333 35699999999999999999999887
Q ss_pred cc
Q 025866 122 GF 123 (247)
Q Consensus 122 ~~ 123 (247)
+.
T Consensus 281 P~ 282 (443)
T PRK09045 281 PE 282 (443)
T ss_pred HH
Confidence 64
No 38
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=96.53 E-value=0.032 Score=49.71 Aligned_cols=89 Identities=18% Similarity=0.187 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHcCCceEEeeccc-HHHHHHHHHhcCCCCCcEEE-EeCCCCH-------HHHHHH---HHC-CCeeeec
Q 025866 55 GVFRQQLELAKELKRPASIHCVRA-FGDLLEIMKSVGPFPDGVII-HSYLGSA-------EMVPEL---SKL-GAYFSFS 121 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a-~~~~l~iLk~~~~~~~~~I~-H~fsGs~-------~~~~~~---l~~-G~~~Si~ 121 (247)
..+.+.++.+.++|+||.+|+... ...+.++++++ . .++|+ |. .... ...+.+ ++. ++|+=++
T Consensus 110 ~~~~~~~~~~~~~gl~v~~~~~~~~l~~l~~l~~~~-~--l~ivldH~-G~p~~~~~~~~~~~~~~l~~l~~pNV~~k~S 185 (263)
T cd01311 110 DELDEIAKRAAELGWHVQVYFDAVDLPALLPFLQKL-P--VAVVIDHF-GRPDVTKGVDGAEFAALLKLIEEGNVWVKVS 185 (263)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCHhhHHHHHHHHHHC-C--CCEEEECC-CCCCCCCCCCCHhHHHHHHHHhcCCEEEEec
Confidence 557788999999999999999654 35677788887 3 45777 63 2111 122222 244 7888888
Q ss_pred ccccccc-------cc-------CCCCCceEEecCCCCCC
Q 025866 122 GFLMSMK-------AQ-------KVPSERILLETDAPDAL 147 (247)
Q Consensus 122 ~~i~~~~-------~~-------~iPldriLlETD~P~~~ 147 (247)
|...... .. .+..+|+|-=||.|.+.
T Consensus 186 g~~~~~~~~~~~~~~~~~~~~~~~~g~dRlmfGSD~P~~~ 225 (263)
T cd01311 186 GPYRLSVKQEAYADVIAFARQIVAAAPDRLVWGTDWPHPR 225 (263)
T ss_pred chhhcCCCCCCHHHHHHHHHHHHHhCCCcEEEeCCCCCCC
Confidence 7532110 01 15679999999999963
No 39
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=96.46 E-value=0.089 Score=50.22 Aligned_cols=70 Identities=16% Similarity=0.134 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHcCCceEEeecccHHH-----------HHHHHHhcCCCCCcE-EEEeCCCCHHHHHHHHHCCCeeeecc
Q 025866 55 GVFRQQLELAKELKRPASIHCVRAFGD-----------LLEIMKSVGPFPDGV-IIHSYLGSAEMVPELSKLGAYFSFSG 122 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a~~~-----------~l~iLk~~~~~~~~~-I~H~fsGs~~~~~~~l~~G~~~Si~~ 122 (247)
+.+...+++|+++++|+.+|+-....+ .++.+.+.+....+. +.||..-+.+.++.+.+.|..++..+
T Consensus 190 e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~G~~~i~~l~~~g~l~~r~~~~H~~~l~~~~~~~la~~g~~v~~~P 269 (430)
T PRK06038 190 EFLSKVKKLANKDGVGIHIHVLETEAELNQMKEQYGMCSVNYLDDIGFLGPDVLAAHCVWLSDGDIEILRERGVNVSHNP 269 (430)
T ss_pred HHHHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEEecCCHHHHHHHHhcCCEEEECh
Confidence 678889999999999999999986433 234555665444444 46999999999999999999999887
Q ss_pred cc
Q 025866 123 FL 124 (247)
Q Consensus 123 ~i 124 (247)
..
T Consensus 270 ~~ 271 (430)
T PRK06038 270 VS 271 (430)
T ss_pred HH
Confidence 43
No 40
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=96.43 E-value=0.075 Score=49.38 Aligned_cols=70 Identities=21% Similarity=0.299 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHcCCceEEeecccHHHH-----------HHHHHhcCCCCCc-EEEEeCCCCHHHHHHHHHCCCeeeec
Q 025866 54 VGVFRQQLELAKELKRPASIHCVRAFGDL-----------LEIMKSVGPFPDG-VIIHSYLGSAEMVPELSKLGAYFSFS 121 (247)
Q Consensus 54 ~~vf~~qL~lA~~~~lpv~lH~~~a~~~~-----------l~iLk~~~~~~~~-~I~H~fsGs~~~~~~~l~~G~~~Si~ 121 (247)
.+.|.+.+++|.++|+||.+|+-...... ++.+.+.+....+ .+.|+..-+.+.++.+.+.|+++++.
T Consensus 193 ~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~l~~~~~~~l~~~gi~~~~~ 272 (411)
T cd01298 193 DELLREVAELAREYGVPLHIHLAETEDEVEESLEKYGKRPVEYLEELGLLGPDVVLAHCVWLTDEEIELLAETGTGVAHN 272 (411)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEecCCCHHHHHHHHHcCCeEEEC
Confidence 46788999999999999999986543322 2223333322233 46799999999999999999998877
Q ss_pred cc
Q 025866 122 GF 123 (247)
Q Consensus 122 ~~ 123 (247)
+.
T Consensus 273 p~ 274 (411)
T cd01298 273 PA 274 (411)
T ss_pred hH
Confidence 64
No 41
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=96.42 E-value=0.054 Score=50.55 Aligned_cols=113 Identities=22% Similarity=0.188 Sum_probs=75.4
Q ss_pred CceEEeecccHH--HHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCCeeeeccccccccc-----cC---------C
Q 025866 69 RPASIHCVRAFG--DLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKA-----QK---------V 132 (247)
Q Consensus 69 lpv~lH~~~a~~--~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~G~~~Si~~~i~~~~~-----~~---------i 132 (247)
+||.+|+-++.+ .++++.++.+. .-.+.|++.. .+.++++.+.|+++++++....... .. -
T Consensus 193 ~~v~vHa~~~~~i~~~l~~~~e~g~--~~~i~H~~~~-~~~~~~la~~gv~v~~~P~~~~~~~~~~~~~~~~~~~~l~~a 269 (359)
T cd01309 193 IPVRIHAHRADDILTAIRIAKEFGI--KITIEHGAEG-YKLADELAKHGIPVIYGPTLTLPKKVEEVNDAIDTNAYLLKK 269 (359)
T ss_pred eeEEEEeCCHHHHHHHHHHHHHcCC--CEEEECchhH-HHHHHHHHHcCCCEEECccccccccHHHhhcchhhHHHHHHc
Confidence 899999987543 45667777764 1256699876 7788888889999988875432211 00 1
Q ss_pred CCCceEEecCCCCCCCchhhccccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCCCcccCcchhHHHHHHH
Q 025866 133 PSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDY 212 (247)
Q Consensus 133 PldriLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n~P~~l~~v~~~ 212 (247)
.-=++.+-||+|+... + .+..-+.
T Consensus 270 GGv~valgsD~~~~~~---------------------------------------------------~----~l~~~~~- 293 (359)
T cd01309 270 GGVAFAISSDHPVLNI---------------------------------------------------R----NLNLEAA- 293 (359)
T ss_pred CCceEEEECCCCCccc---------------------------------------------------h----hHHHHHH-
Confidence 0134778888876311 0 1222222
Q ss_pred HHHccCCCHHHHHHHHHHHHHHhhCCCC
Q 025866 213 VASLLDMTKEELAELSYRNAIRLFSYEG 240 (247)
Q Consensus 213 iA~~~~~s~e~l~~~~~~N~~~~f~~~~ 240 (247)
++...+++.+++.+.++.|.-+++++.+
T Consensus 294 ~a~~~gl~~~~al~~~T~n~A~~lg~~~ 321 (359)
T cd01309 294 KAVKYGLSYEEALKAITINPAKILGIED 321 (359)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhCCCC
Confidence 2334789999999999999999999865
No 42
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=96.35 E-value=0.32 Score=46.21 Aligned_cols=168 Identities=13% Similarity=0.114 Sum_probs=100.0
Q ss_pred ChhHHHHHHHHhhc---CCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeeccc-------HHHHHH
Q 025866 15 TPNWFSTLKEFFEI---TPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRA-------FGDLLE 84 (247)
Q Consensus 15 ~~~~l~~l~~~l~~---~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a-------~~~~l~ 84 (247)
+++.+++|.+++.+ ..+.++. +|+.|... ...-...+.+.+++|+++|.++.+|+++. ..++++
T Consensus 162 ~~~~~~~~~~l~~~al~~Ga~g~~-~~~~y~~~-----~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~e~~av~~~~~ 235 (415)
T cd01297 162 TEEELAKMRELLREALEAGALGIS-TGLAYAPR-----LYAGTAELVALARVAARYGGVYQTHVRYEGDSILEALDELLR 235 (415)
T ss_pred CHHHHHHHHHHHHHHHHCCCeEEE-cccccCCc-----ccCCHHHHHHHHHHHHHcCCEEEEEECcccccHHHHHHHHHH
Confidence 45668888888743 4566665 67766421 01123566677789999999999999964 345566
Q ss_pred HHHhcCCCCCcEEEEeCCCCH----------HHHHHHHHCCCeeeec--ccccc-ccccC--CCCCceEEecCCCCCCCc
Q 025866 85 IMKSVGPFPDGVIIHSYLGSA----------EMVPELSKLGAYFSFS--GFLMS-MKAQK--VPSERILLETDAPDALPK 149 (247)
Q Consensus 85 iLk~~~~~~~~~I~H~fsGs~----------~~~~~~l~~G~~~Si~--~~i~~-~~~~~--iPldriLlETD~P~~~p~ 149 (247)
+.+..+. +-.|.|.-+... +.++++...|.-++.- +.... ....+ +--....+=||.+-.. .
T Consensus 236 ~a~~~g~--r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~~v~~e~~p~~~~~~~~~~~l~~~~~~~i~SDh~~~~-~ 312 (415)
T cd01297 236 LGRETGR--PVHISHLKSAGAPNWGKIDRLLALIEAARAEGLQVTADVYPYGAGSEDDVRRIMAHPVVMGGSDGGALG-K 312 (415)
T ss_pred HHHHhCC--CEEEEEEecCCCcccchHHHHHHHHHHHHHhCCcEEEEeCCCCCCcHHHHHHHHcCCCceeeeCCCcCC-C
Confidence 6666643 223558876544 6777777777655432 31111 11000 1114567778753211 0
Q ss_pred hhhccccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCCCcccCcchhHHHHHHHHHHcc-CCCHHHHHHHH
Q 025866 150 AELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLL-DMTKEELAELS 228 (247)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n~P~~l~~v~~~iA~~~-~~s~e~l~~~~ 228 (247)
+. ...+..++.++.....-. .++++++.+.+
T Consensus 313 ~~------------------------------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 344 (415)
T cd01297 313 PH------------------------------------------------PRSYGDFTRVLGHYVRERKLLSLEEAVRKM 344 (415)
T ss_pred CC------------------------------------------------cchhCCHHHHHHHHhcccCCCCHHHHHHHH
Confidence 00 001112666665544334 39999999999
Q ss_pred HHHHHHhhCCC
Q 025866 229 YRNAIRLFSYE 239 (247)
Q Consensus 229 ~~N~~~~f~~~ 239 (247)
..|.-++|++.
T Consensus 345 t~~pA~~~gl~ 355 (415)
T cd01297 345 TGLPARVFGLA 355 (415)
T ss_pred HHHHHHHhCCC
Confidence 99999999985
No 43
>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria, the enzyme is part of histidine utilization (hut) operon.
Probab=96.24 E-value=0.12 Score=47.81 Aligned_cols=130 Identities=23% Similarity=0.182 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHcCCceEEeecccH-HHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCCeeeeccccccc-cccC
Q 025866 54 VGVFRQQLELAKELKRPASIHCVRAF-GDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSM-KAQK 131 (247)
Q Consensus 54 ~~vf~~qL~lA~~~~lpv~lH~~~a~-~~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~G~~~Si~~~i~~~-~~~~ 131 (247)
.+.+++.+++|+++|+++.+|+-... ....+...+.+. ..+.|+..-+.+.++.+.+.|..++..+..... ....
T Consensus 192 ~~~~~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~g~---~~i~H~~~~~~~~i~~la~~g~~v~~~P~~~~~l~~~~ 268 (371)
T cd01296 192 LEQSRRILEAAKEAGLPVKIHADELSNIGGAELAAELGA---LSADHLEHTSDEGIAALAEAGTVAVLLPGTAFSLRETY 268 (371)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEcCcCCCCHHHHHHHcCC---CeeHHhcCCCHHHHHHHHHcCCeEEEChHHHHHhCCCC
Confidence 35778899999999999999997531 111233344442 246699988999999999999998877642211 1100
Q ss_pred CCC-------CceEEecCC-CCCCCchhhccccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCCCcccCcc
Q 025866 132 VPS-------ERILLETDA-PDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHP 203 (247)
Q Consensus 132 iPl-------driLlETD~-P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n~P 203 (247)
.|. -++.+=||+ |+..+ -
T Consensus 269 ~~~~~l~~~Gv~v~lgsD~~p~~~~------------------------------------------------------~ 294 (371)
T cd01296 269 PPARKLIDAGVPVALGTDFNPGSSP------------------------------------------------------T 294 (371)
T ss_pred CCHHHHHHCCCcEEEecCCCCCCCh------------------------------------------------------H
Confidence 010 136677775 33100 0
Q ss_pred hhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCCC
Q 025866 204 ANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 240 (247)
Q Consensus 204 ~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~~ 240 (247)
.++...+.......+++.+++.+..+.|.-+++++.+
T Consensus 295 ~~l~~~~~~~~~~~~l~~~~al~~aT~~~A~~lg~~~ 331 (371)
T cd01296 295 SSMPLVMHLACRLMRMTPEEALTAATINAAAALGLGE 331 (371)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCC
Confidence 1255555555566789999999999999999999863
No 44
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=96.23 E-value=0.28 Score=46.77 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHcCCceEEeecccHHHHH-----------HHHHhcCCCCCc-EEEEeCCCCHHHHHHHHHCCCeeeec
Q 025866 54 VGVFRQQLELAKELKRPASIHCVRAFGDLL-----------EIMKSVGPFPDG-VIIHSYLGSAEMVPELSKLGAYFSFS 121 (247)
Q Consensus 54 ~~vf~~qL~lA~~~~lpv~lH~~~a~~~~l-----------~iLk~~~~~~~~-~I~H~fsGs~~~~~~~l~~G~~~Si~ 121 (247)
.+.|++.+++|.++++|+.+|+-....++- +.|.+.+....+ .+.||..-+.+.++.+.+.|..++..
T Consensus 198 ~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~g~~~~~~~l~H~~~~~~~~~~~~~~~g~~v~~~ 277 (445)
T PRK07228 198 EELLRGVRDLADEYGVRIHTHASENRGEIETVEEETGMRNIHYLDEVGLTGEDLILAHCVWLDEEEREILAETGTHVTHC 277 (445)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCHHHHHHHCCCCCCCcEEEEEecCCHHHHHHHHHcCCeEEEC
Confidence 357888999999999999999976544332 223333332223 46699988899999999999999877
Q ss_pred cc
Q 025866 122 GF 123 (247)
Q Consensus 122 ~~ 123 (247)
+.
T Consensus 278 P~ 279 (445)
T PRK07228 278 PS 279 (445)
T ss_pred hH
Confidence 64
No 45
>PRK06151 N-ethylammeline chlorohydrolase; Provisional
Probab=96.22 E-value=0.055 Score=52.59 Aligned_cols=70 Identities=24% Similarity=0.386 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHcCCceEEeecccHHHH-----------HHHHHhcCCCCCc-EEEEeCCCCH---------HHHHHHH
Q 025866 54 VGVFRQQLELAKELKRPASIHCVRAFGDL-----------LEIMKSVGPFPDG-VIIHSYLGSA---------EMVPELS 112 (247)
Q Consensus 54 ~~vf~~qL~lA~~~~lpv~lH~~~a~~~~-----------l~iLk~~~~~~~~-~I~H~fsGs~---------~~~~~~l 112 (247)
.+.+.+.+++|.++|+|+.+|+-....++ ++.+.+.+....+ .+.||+.-+. +.++.+.
T Consensus 220 ~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~~~~~g~l~~r~~l~H~~~l~~~~~~~~~~~~~~~~la 299 (488)
T PRK06151 220 VDLLRRTAAAARELGCPVRLHCAQGVLEVETVRRLHGTTPLEWLADVGLLGPRLLIPHATYISGSPRLNYSGGDDLALLA 299 (488)
T ss_pred HHHHHHHHHHHHHCCCcEEEEECCchHHHHHHHHHcCCCHHHHHHHcCCCCCCcEEEEEEEcCCccccccCCHHHHHHHH
Confidence 46788999999999999999997554332 3445555533333 3559998888 8999999
Q ss_pred HCCCeeeeccc
Q 025866 113 KLGAYFSFSGF 123 (247)
Q Consensus 113 ~~G~~~Si~~~ 123 (247)
+.|.+++..+.
T Consensus 300 ~~g~~v~~~P~ 310 (488)
T PRK06151 300 EHGVSIVHCPL 310 (488)
T ss_pred hcCCEEEECch
Confidence 99999988764
No 46
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=96.20 E-value=0.27 Score=46.98 Aligned_cols=69 Identities=19% Similarity=0.157 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHcC-CceEEeecccHHHHHHH-------------HHhcCCCCCc-EEEEeCCCCHHHHHHHHHCCCeee
Q 025866 55 GVFRQQLELAKELK-RPASIHCVRAFGDLLEI-------------MKSVGPFPDG-VIIHSYLGSAEMVPELSKLGAYFS 119 (247)
Q Consensus 55 ~vf~~qL~lA~~~~-lpv~lH~~~a~~~~l~i-------------Lk~~~~~~~~-~I~H~fsGs~~~~~~~l~~G~~~S 119 (247)
+.+++..++|.+++ +|+.+|+-....++-.+ |.+.|....+ .+.||..-+.+.++.+.+.|..++
T Consensus 208 e~l~~~~~~A~~~g~~~v~~H~~e~~~e~~~~~~~~g~~~~p~~~l~~~G~l~~~~~l~H~~~l~~~~~~~l~~~g~~v~ 287 (429)
T cd01303 208 ELLAALGKLAKEHPDLHIQTHISENLDEIAWVKELFPGARDYLDVYDKYGLLTEKTVLAHCVHLSEEEFNLLKERGASVA 287 (429)
T ss_pred HHHHHHHHHHHHCCCCeEEEeeCCCHHHHHHHHHHcCCCCCHHHHHHHCCCCCCCcEEEeCCCCCHHHHHHHHHcCCEEE
Confidence 56889999999999 99999998765544333 4444433333 466999999999999999999998
Q ss_pred eccc
Q 025866 120 FSGF 123 (247)
Q Consensus 120 i~~~ 123 (247)
..+.
T Consensus 288 ~~P~ 291 (429)
T cd01303 288 HCPT 291 (429)
T ss_pred ECcc
Confidence 8774
No 47
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=96.20 E-value=0.17 Score=48.10 Aligned_cols=70 Identities=14% Similarity=0.242 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHcCCceEEeecccHHHHH-----------HHHHhcCCCCCc-EEEEeCCCCHHHHHHHHHCCCeeeec
Q 025866 54 VGVFRQQLELAKELKRPASIHCVRAFGDLL-----------EIMKSVGPFPDG-VIIHSYLGSAEMVPELSKLGAYFSFS 121 (247)
Q Consensus 54 ~~vf~~qL~lA~~~~lpv~lH~~~a~~~~l-----------~iLk~~~~~~~~-~I~H~fsGs~~~~~~~l~~G~~~Si~ 121 (247)
.+.+++..++|+++++|+.+|+-....++- +.+.+.+....+ .+.||..-+.+.++.+.+.|.+++..
T Consensus 188 ~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~G~l~~~~~~~H~~~l~~~~l~~la~~g~~v~~~ 267 (424)
T PRK08393 188 LALLKWVREKAREWNKLITIHLSETMDEIKQIREKYGKSPVVLLDEIGFLNEDVIAAHGVWLSSRDIRILASAGVTVAHN 267 (424)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCcCHHHHHHHcCCCCCCcEEEEeecCCHHHHHHHHhcCCEEEEC
Confidence 378899999999999999999976654443 334444533334 46799999999999999999999988
Q ss_pred cc
Q 025866 122 GF 123 (247)
Q Consensus 122 ~~ 123 (247)
+.
T Consensus 268 P~ 269 (424)
T PRK08393 268 PA 269 (424)
T ss_pred HH
Confidence 74
No 48
>PRK06380 metal-dependent hydrolase; Provisional
Probab=96.18 E-value=0.21 Score=47.28 Aligned_cols=70 Identities=16% Similarity=0.231 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHcCCceEEeecccHHHHHHHHHhcCC-----------CCCc-EEEEeCCCCHHHHHHHHHCCCeeeecc
Q 025866 55 GVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGP-----------FPDG-VIIHSYLGSAEMVPELSKLGAYFSFSG 122 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a~~~~l~iLk~~~~-----------~~~~-~I~H~fsGs~~~~~~~l~~G~~~Si~~ 122 (247)
+.++...++|+++|+|+.+|+..+..++....++++. ...+ .+.||..-+.+.++.+.+.|..+++.+
T Consensus 186 e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~ie~~~~~g~l~~~~~~~H~~~l~~~d~~~la~~g~~v~~~P 265 (418)
T PRK06380 186 ETYLKAKEIAEKYDTIMHMHLSETRKEVYDHVKRTGERPVEHLEKIGFLNSKLIAAHCVWATYHEIKLLSKNGVKVSWNS 265 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHHhCCCHHHHHHHCCCCCCCeEEEEeecCCHHHHHHHHHcCCEEEECH
Confidence 6799999999999999999999986666555544432 2223 456999989999999999999998887
Q ss_pred cc
Q 025866 123 FL 124 (247)
Q Consensus 123 ~i 124 (247)
..
T Consensus 266 ~s 267 (418)
T PRK06380 266 VS 267 (418)
T ss_pred HH
Confidence 53
No 49
>PRK07583 cytosine deaminase-like protein; Validated
Probab=96.15 E-value=0.33 Score=46.51 Aligned_cols=69 Identities=12% Similarity=0.027 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHcCCceEEeeccc-------HHHHHHHHHhcCCCCCcEEEEeCCCC-------HHHHHHHHHCCCeeee
Q 025866 55 GVFRQQLELAKELKRPASIHCVRA-------FGDLLEIMKSVGPFPDGVIIHSYLGS-------AEMVPELSKLGAYFSF 120 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a-------~~~~l~iLk~~~~~~~~~I~H~fsGs-------~~~~~~~l~~G~~~Si 120 (247)
+.+.+.+++|+++|+||.+|+-.. ...+.+.+.+.+....-.+.||+.-+ .+.++.+.+.|..++.
T Consensus 212 ~~l~~i~~lA~~~G~~v~vH~~E~~~~~~~~l~~~~~~~~~~G~~~~v~i~H~~~l~~~~~~~~~~~i~~la~~gv~vv~ 291 (438)
T PRK07583 212 AQLDRLFRLARERGLDLDLHVDETGDPASRTLKAVAEAALRNGFEGKVTCGHCCSLAVQPEEQAQATIALVAEAGIAIVS 291 (438)
T ss_pred HHHHHHHHHHHHhCCCcEEeECCCCCchHHHHHHHHHHHHHhCCCCCEEEEeccchhcCCHHHHHHHHHHHHHcCCeEEE
Confidence 568889999999999999999543 12233444455543232355998654 3678888889999987
Q ss_pred ccc
Q 025866 121 SGF 123 (247)
Q Consensus 121 ~~~ 123 (247)
.+.
T Consensus 292 ~P~ 294 (438)
T PRK07583 292 LPM 294 (438)
T ss_pred Ccc
Confidence 664
No 50
>PRK07572 cytosine deaminase; Validated
Probab=96.13 E-value=0.32 Score=46.40 Aligned_cols=98 Identities=16% Similarity=0.189 Sum_probs=63.4
Q ss_pred HHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecccH-------HHHHHHHHhcCC
Q 025866 19 FSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAF-------GDLLEIMKSVGP 91 (247)
Q Consensus 19 l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~-------~~~l~iLk~~~~ 91 (247)
.+.+++.+..+ +..|| |.++.... .....+.+++.+++|+++++||.+|+-... +.+.+.+.+.|.
T Consensus 162 ~~~~~~~l~~g-~d~iG--g~p~~~~~----~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~G~ 234 (426)
T PRK07572 162 VDNLERALDMG-VDVVG--GIPHFERT----MADGAESVRLLCEIAAERGLRVDMHCDESDDPLSRHIETLAAETQRLGL 234 (426)
T ss_pred HHHHHHHHHcC-CCEEe--CCCCCccc----cchHHHHHHHHHHHHHHcCCCeEEEECCCCChhHHHHHHHHHHHHHhCC
Confidence 45666666543 44566 55554311 123347799999999999999999995432 224445556665
Q ss_pred CCCcEEEEeCCCCH-------HHHHHHHHCCCeeeeccc
Q 025866 92 FPDGVIIHSYLGSA-------EMVPELSKLGAYFSFSGF 123 (247)
Q Consensus 92 ~~~~~I~H~fsGs~-------~~~~~~l~~G~~~Si~~~ 123 (247)
.....+.||..-+. +.++.+.+.|.+++.++.
T Consensus 235 ~~~v~~~H~~~l~~~~~~~~~~~~~~la~~g~~vv~~P~ 273 (426)
T PRK07572 235 QGRVAGSHLTSMHSMDNYYVSKLIPLMAEAGVNAIANPL 273 (426)
T ss_pred CCCEEEEccchhhcCCHHHHHHHHHHHHHcCCeEEECch
Confidence 44333569975443 568888889999988774
No 51
>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional
Probab=96.12 E-value=0.22 Score=47.76 Aligned_cols=70 Identities=17% Similarity=0.139 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHcCCceEEeecccHHHH-----------HHHHHhcCCCCCc-EEEEeCCCCHHHHHHHHHCCCeeeecc
Q 025866 55 GVFRQQLELAKELKRPASIHCVRAFGDL-----------LEIMKSVGPFPDG-VIIHSYLGSAEMVPELSKLGAYFSFSG 122 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a~~~~-----------l~iLk~~~~~~~~-~I~H~fsGs~~~~~~~l~~G~~~Si~~ 122 (247)
+.+++..++|+++|+|+.+|+-....++ ++.|.+.|....+ .+.||..-+.+.++.+.+.|..++..+
T Consensus 197 e~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~g~~~~~~l~~~Gll~~~~~~~H~~~l~~~d~~~la~~g~~v~~~P 276 (435)
T PRK15493 197 ELLEECARIAVENQTMVHIHLSETEREVRDIEAQYGKRPVEYAASCGLFKRPTVIAHGVVLNDNERAFLAEHDVRVAHNP 276 (435)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCcEEEEeecCCHHHHHHHHHcCCeEEECh
Confidence 5788999999999999999997654432 3555555544333 466999889999999999999999887
Q ss_pred cc
Q 025866 123 FL 124 (247)
Q Consensus 123 ~i 124 (247)
..
T Consensus 277 ~s 278 (435)
T PRK15493 277 NS 278 (435)
T ss_pred HH
Confidence 54
No 52
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=96.08 E-value=0.099 Score=46.29 Aligned_cols=64 Identities=14% Similarity=0.114 Sum_probs=51.0
Q ss_pred HHHHHHHHHHcCCceEEeecccHH----HHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCCeeeeccc
Q 025866 57 FRQQLELAKELKRPASIHCVRAFG----DLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGF 123 (247)
Q Consensus 57 f~~qL~lA~~~~lpv~lH~~~a~~----~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~G~~~Si~~~ 123 (247)
|++.+++|+++|+|+.+|+-.... ..++.+.+.+ ...+.||..-+.+.++.+.+.|..++..+.
T Consensus 127 l~~~~~~A~~~g~~v~~H~~e~~~~~g~~~i~~~~~~~---~~~i~H~~~l~~~~~~~la~~g~~v~~~P~ 194 (263)
T cd01305 127 LEDILELLRRRGKLFAIHASETRESVGMTDIERALDLE---PDLLVHGTHLTDEDLELVRENGVPVVLCPR 194 (263)
T ss_pred HHHHHHHHHHCCCeeEEecCCCCCCCCchhHHHHHhCC---CCEEEEcCCCCHHHHHHHHHcCCcEEEChh
Confidence 999999999999999999986533 2234343443 235789999999999999999999998874
No 53
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=95.88 E-value=0.31 Score=44.45 Aligned_cols=65 Identities=15% Similarity=0.167 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHcCCceEEeecccHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCCeeeeccc
Q 025866 54 VGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGF 123 (247)
Q Consensus 54 ~~vf~~qL~lA~~~~lpv~lH~~~a~~~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~G~~~Si~~~ 123 (247)
.+.|.+.++.|.++++|+.+|+... ..+...+ +.+. ..|.|++.-+.+.++.+.+.|.+++.++.
T Consensus 159 ~e~l~~~~~~A~~~g~~v~~H~~~~-~~i~~~l-~~G~---~~i~H~~~~~~~~~~~l~~~g~~~~~t~~ 223 (342)
T cd01299 159 EEELRAIVDEAHKAGLYVAAHAYGA-EAIRRAI-RAGV---DTIEHGFLIDDETIELMKEKGIFLVPTLA 223 (342)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHHH-HcCC---CEEeecCCCCHHHHHHHHHCCcEEeCcHH
Confidence 5678899999999999999999864 2222333 3442 35789999999999999999999876654
No 54
>PRK12393 amidohydrolase; Provisional
Probab=95.87 E-value=0.55 Score=45.28 Aligned_cols=70 Identities=11% Similarity=-0.016 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHcCCceEEeecccHHHHHHHHHh-----------cCCCCCc-EEEEeCCCCHHHHHHHHHCCCeeeecc
Q 025866 55 GVFRQQLELAKELKRPASIHCVRAFGDLLEIMKS-----------VGPFPDG-VIIHSYLGSAEMVPELSKLGAYFSFSG 122 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a~~~~l~iLk~-----------~~~~~~~-~I~H~fsGs~~~~~~~l~~G~~~Si~~ 122 (247)
+.|+..+++|.++++|+.+|+-....++-..++. .+....+ .+.||..-+.+.++.+.+.|..++..+
T Consensus 218 e~l~~~~~~a~~~g~~~~~H~~e~~~~~~~~~~~~g~~~~~~l~~~g~l~~~~~~~H~~~l~~~d~~~la~~g~~v~~~P 297 (457)
T PRK12393 218 ELLREVARAARGMGLRLHSHLSETVDYVDFCREKYGMTPVQFVAEHDWLGPDVWFAHLVKLDAEEIALLAQTGTGIAHCP 297 (457)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEEecCCHHHHHHHHHcCCeEEECc
Confidence 6888999999999999999998766554444433 3322233 366999999999999999999999887
Q ss_pred cc
Q 025866 123 FL 124 (247)
Q Consensus 123 ~i 124 (247)
..
T Consensus 298 ~s 299 (457)
T PRK12393 298 QS 299 (457)
T ss_pred hh
Confidence 53
No 55
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=95.84 E-value=0.083 Score=49.00 Aligned_cols=126 Identities=19% Similarity=0.294 Sum_probs=81.5
Q ss_pred HHHHHHHHHHcCCceEEeeccc---HHHHHHHHHhcCCCCCcEEEEeCCCCHH-----------HHHHHHHCCCeeeecc
Q 025866 57 FRQQLELAKELKRPASIHCVRA---FGDLLEIMKSVGPFPDGVIIHSYLGSAE-----------MVPELSKLGAYFSFSG 122 (247)
Q Consensus 57 f~~qL~lA~~~~lpv~lH~~~a---~~~~l~iLk~~~~~~~~~I~H~fsGs~~-----------~~~~~l~~G~~~Si~~ 122 (247)
++..+++|.++++|+++|.-+- .++++++|+.= -+|-|||+|.+. .++++...|+-|-++-
T Consensus 174 l~la~~ia~~~klPlmvHigePp~~~dEvlerL~~G-----DIitHcfngkpn~~l~~dg~vr~~vrra~erGV~fD~gh 248 (386)
T COG3964 174 LTLALRIANDLKLPLMVHIGEPPVLMDEVLERLRRG-----DIITHCFNGKPNTILTDDGVVRAEVRRARERGVIFDAGH 248 (386)
T ss_pred HHHHHHHHhhcCCceEEecCCCCccHHHHHHhccCC-----ceeeeeccCCCCCccccchhHHHHHHHHHhcceEEEccC
Confidence 5677899999999999999763 46777777652 256699999653 4677888898887763
Q ss_pred cc--cccc-ccC-C--CCCceEEecCCCCCCCchhhccccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCC
Q 025866 123 FL--MSMK-AQK-V--PSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLP 196 (247)
Q Consensus 123 ~i--~~~~-~~~-i--PldriLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 196 (247)
-. .+.+ +++ | .+-.-.+-||---
T Consensus 249 G~asfsf~vAr~aia~GllP~~ISSDlh~--------------------------------------------------- 277 (386)
T COG3964 249 GRASFSFNVARRAIANGLLPDIISSDLHT--------------------------------------------------- 277 (386)
T ss_pred CcceeeHHHHHHHHhcCCCcceeecccee---------------------------------------------------
Confidence 22 1122 211 1 1111234444311
Q ss_pred CcccCcch-hHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCC
Q 025866 197 KETLNHPA-NIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 239 (247)
Q Consensus 197 ~~~~n~P~-~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~ 239 (247)
..+.|.|. .|+.+...+- -.|++..+|.+.++.|.-.+.++.
T Consensus 278 ~~~~n~Pv~dla~~mSKll-algmpl~~Vi~avT~npA~~i~l~ 320 (386)
T COG3964 278 ITKLNGPVYDLAWIMSKLL-ALGMPLTDVINAVTHNPAVLIGLA 320 (386)
T ss_pred eeecCchHHHHHHHHHHHH-HcCCcHHHHHHHHhcCHHHHhCcc
Confidence 01345553 4555555443 378999999999999999998875
No 56
>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=95.80 E-value=0.68 Score=44.08 Aligned_cols=69 Identities=19% Similarity=0.205 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHcCCceEEeecccHHHHH-----------HHHHhcCCCCCc-EEEEeCCCCHHHHHHHHHCCCeeeecc
Q 025866 55 GVFRQQLELAKELKRPASIHCVRAFGDLL-----------EIMKSVGPFPDG-VIIHSYLGSAEMVPELSKLGAYFSFSG 122 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a~~~~l-----------~iLk~~~~~~~~-~I~H~fsGs~~~~~~~l~~G~~~Si~~ 122 (247)
+.+++..++|++ |+|+.+|+-....++. +.+.+.+....+ .+.||..-+.+.++.+.+.|..+++.+
T Consensus 207 e~l~~~~~~a~~-g~~i~~H~~e~~~e~~~~~~~~g~~~i~~l~~~g~l~~~~~~~H~~~l~~~~~~~la~~g~~v~~~P 285 (418)
T cd01313 207 EQLAALAALASE-KAPVHIHLAEQPKEVDDCLAAHGRRPVELLLDHGHLDARWCLVHATHLTDNETLLLGRSGAVVGLCP 285 (418)
T ss_pred HHHHHHHHHHhc-CCceEEEeCCCHHHHHHHHHHcCCCHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHcCCEEEECC
Confidence 678888999999 9999999965544432 344444443344 456999999999999999999999988
Q ss_pred cc
Q 025866 123 FL 124 (247)
Q Consensus 123 ~i 124 (247)
..
T Consensus 286 ~s 287 (418)
T cd01313 286 TT 287 (418)
T ss_pred Cc
Confidence 53
No 57
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=95.74 E-value=0.098 Score=50.38 Aligned_cols=70 Identities=20% Similarity=0.243 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHcCCceEEeeccc--HHHHHHHHHhc----CCCC-CcEEEEeCCCCHHHHHHHHHCCCeeeeccc
Q 025866 54 VGVFRQQLELAKELKRPASIHCVRA--FGDLLEIMKSV----GPFP-DGVIIHSYLGSAEMVPELSKLGAYFSFSGF 123 (247)
Q Consensus 54 ~~vf~~qL~lA~~~~lpv~lH~~~a--~~~~l~iLk~~----~~~~-~~~I~H~fsGs~~~~~~~l~~G~~~Si~~~ 123 (247)
.+-+.+.++.|.++|++|.+|+.+. ...+++.+++. +... ...|.|+..-+.+.++++.+.|.++++.+.
T Consensus 294 ~e~l~~~~~~a~~~g~~v~~Ha~gd~~i~~~l~~~~~~~~~~g~~~~r~~i~H~~~~~~~~~~~l~~~gv~~~~~P~ 370 (479)
T cd01300 294 PEELEELVRAADEAGLQVAIHAIGDRAVDTVLDALEAALKDNPRADHRHRIEHAQLVSPDDIPRFAKLGVIASVQPN 370 (479)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHHHHHhcCCCCCCceeeecccCCHHHHHHHHHcCCceEeCcc
Confidence 5678899999999999999999853 33445554432 2111 235779999999999999999999988764
No 58
>PLN02942 dihydropyrimidinase
Probab=95.56 E-value=0.8 Score=44.61 Aligned_cols=96 Identities=11% Similarity=0.028 Sum_probs=56.9
Q ss_pred HHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecccHH--HHH------------
Q 025866 18 WFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFG--DLL------------ 83 (247)
Q Consensus 18 ~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~--~~l------------ 83 (247)
.++.+.+++.+..+.+++. .+.+... ... -.+.+.+.++.|++++++|++|+..... ...
T Consensus 136 ~~~e~~~l~~~~gv~~~k~-~~~~~~~-~~~----~~~~l~~~~~~a~~~~~~v~~HaE~~~~~~~~~~~~~~~G~~~~~ 209 (486)
T PLN02942 136 VSRDMETLVKEKGINSFKF-FMAYKGS-LMV----TDELLLEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPE 209 (486)
T ss_pred HHHHHHHHHHhCCCceEEE-EEecCCC-CCC----CHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHHcCCCChh
Confidence 3556666665545555553 3433211 011 1356888899999999999999875321 001
Q ss_pred -------------------HHHHhcCCCCCcE-EEEeCCCCH-HHHHHHHHCCCeeeecc
Q 025866 84 -------------------EIMKSVGPFPDGV-IIHSYLGSA-EMVPELSKLGAYFSFSG 122 (247)
Q Consensus 84 -------------------~iLk~~~~~~~~~-I~H~fsGs~-~~~~~~l~~G~~~Si~~ 122 (247)
.+.+..+ .++ +.|+-+.+. +.++.+.+.|..++...
T Consensus 210 ~~~~~rP~~~E~~av~~~~~la~~~g---~~~~i~H~s~~~~~e~i~~~k~~G~~Vt~e~ 266 (486)
T PLN02942 210 GHALSRPPLLEGEATARAIRLAKFVN---TPLYVVHVMSIDAMEEIARARKSGQRVIGEP 266 (486)
T ss_pred hhhccCCchHHHHHHHHHHHHHHHhC---CCEEEEECCCHHHHHHHHHHHHCCCcEEEEE
Confidence 1222222 233 569998776 88888888887666443
No 59
>PRK08418 chlorohydrolase; Provisional
Probab=95.54 E-value=0.59 Score=44.50 Aligned_cols=90 Identities=14% Similarity=0.111 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHcCCceEEeecccHHHHHH---------------------------HHHhcCCCCCcEEEEeCCCCHH
Q 025866 54 VGVFRQQLELAKELKRPASIHCVRAFGDLLE---------------------------IMKSVGPFPDGVIIHSYLGSAE 106 (247)
Q Consensus 54 ~~vf~~qL~lA~~~~lpv~lH~~~a~~~~l~---------------------------iLk~~~~~~~~~I~H~fsGs~~ 106 (247)
.+.+++..++|+++++|+.+|.-....+.-. .+...+. +...+.||-.-+.+
T Consensus 189 ~e~l~~~~~~A~~~~~~i~~H~~E~~~E~~~~~~~~G~~~~~~~~~~~~~~~~~~pv~~l~~~g~-~~~~~~H~~~~~~~ 267 (408)
T PRK08418 189 PILAKKALQLAKKENLLVSTHFLESKAEREWLEESKGWFKKFFEKFLKEPKPLYTPKEFLELFKG-LRTLFTHCVYASEE 267 (408)
T ss_pred HHHHHHHHHHHHHcCCeEEEEecCCHHHHHHHHhccCchhhhhhhhcccccccCCHHHHHHHhCC-CCeEEEecccCCHH
Confidence 3789999999999999999999987655332 2333332 23356699988999
Q ss_pred HHHHHHHCCCeeeeccccccc-cccCCCC-------CceEEecCCC
Q 025866 107 MVPELSKLGAYFSFSGFLMSM-KAQKVPS-------ERILLETDAP 144 (247)
Q Consensus 107 ~~~~~l~~G~~~Si~~~i~~~-~~~~iPl-------driLlETD~P 144 (247)
.++.+.+.|..++..+..... .....|. =++-|=||++
T Consensus 268 di~~la~~g~~v~~cP~sn~~lg~g~~p~~~~~~~Gi~v~lGtD~~ 313 (408)
T PRK08418 268 ELEKIKSKNASITHCPFSNRLLSNKALDLEKAKKAGINYSIATDGL 313 (408)
T ss_pred HHHHHHHcCCcEEECHhHHHHhcCCCccHHHHHhCCCeEEEeCCCC
Confidence 999999999999998753221 1111121 1578888864
No 60
>TIGR01224 hutI imidazolonepropionase. This enzyme catalyzes the third step in histidine degradation.
Probab=95.48 E-value=0.19 Score=46.58 Aligned_cols=130 Identities=18% Similarity=0.119 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHcCCceEEeecccH-HHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCCeeeeccccccccccC-C
Q 025866 55 GVFRQQLELAKELKRPASIHCVRAF-GDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQK-V 132 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a~-~~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~G~~~Si~~~i~~~~~~~-i 132 (247)
+.|.+.+++|.++++|+.+|+-... ..-.+.+.+.+. ..+-|+..-+.+.++.+.+.|..+++.+......... .
T Consensus 197 ~~~~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~g~---~~~~H~~~~~~~~l~~la~~g~~~~~~P~~~~~l~~~~~ 273 (377)
T TIGR01224 197 EQSRRILQAAQEAGLPVKLHAEELSNLGGAELAAKLGA---VSADHLEHASDAGIKALAEAGTVAVLLPGTTFYLRETYP 273 (377)
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCCCCCHHHHHHHcCC---CccHHHhcCCHHHHHHHHhcCCEEEECchHHHhcCCcCc
Confidence 3588999999999999999996421 112333444442 1245999889999999999999998887532110000 0
Q ss_pred CC-------CceEEecCCCCCCCchhhccccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCCCcccCcchh
Q 025866 133 PS-------ERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPAN 205 (247)
Q Consensus 133 Pl-------driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n~P~~ 205 (247)
|. =++.+=||++. ...+ -.+
T Consensus 274 p~~~l~~~Gv~v~lgTD~~~-~~~~----------------------------------------------------~~~ 300 (377)
T TIGR01224 274 PARQLIDYGVPVALATDLNP-GSSP----------------------------------------------------TLS 300 (377)
T ss_pred cHHHHHHCCCCEEEECCCCC-CCCh----------------------------------------------------hHH
Confidence 10 14677777521 0000 013
Q ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCCC
Q 025866 206 IHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 240 (247)
Q Consensus 206 l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~~ 240 (247)
+...+...+...+++.+++.+..+.|.-+++++.+
T Consensus 301 ~~~~~~~~~~~~~ls~~eal~~~T~~~A~~lg~~~ 335 (377)
T TIGR01224 301 MQLIMSLACRLMKMTPEEALHAATVNAAYALGLGE 335 (377)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCC
Confidence 45555555566789999999999999999998864
No 61
>PRK09356 imidazolonepropionase; Validated
Probab=95.39 E-value=0.39 Score=45.07 Aligned_cols=130 Identities=18% Similarity=0.142 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHcCCceEEeecccH-HHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCCeeeeccccccc-cccC-
Q 025866 55 GVFRQQLELAKELKRPASIHCVRAF-GDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSM-KAQK- 131 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a~-~~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~G~~~Si~~~i~~~-~~~~- 131 (247)
+.+.+.+++|.++|+||.+|+-... ..-++.+.+.+. ..+.|++.-+.+.++.+.+.|.++++.+..... +...
T Consensus 222 ~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~~---~~~~H~~~~~~~~~~~la~~g~~~~~~P~~~~~l~~~~~ 298 (406)
T PRK09356 222 EQSERVLEAAKALGLPVKIHAEQLSNLGGAELAAEYGA---LSADHLEYLDEAGIAAMAEAGTVAVLLPGAFYFLRETQY 298 (406)
T ss_pred HHHHHHHHHHHHCCCCEEEEEecccCCCHHHHHHHcCC---cEehHhhcCCHHHHHHHHHhCCEEEECccchhhcCcccC
Confidence 5677889999999999999996421 111334444432 246699999999999999999999888753211 1111
Q ss_pred CC-------CCceEEecCCCCCCCchhhccccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCCCcccCcch
Q 025866 132 VP-------SERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPA 204 (247)
Q Consensus 132 iP-------ldriLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n~P~ 204 (247)
-| --++.+=||.+.. ..+ -.
T Consensus 299 ~~~~~l~~~Gi~v~lgtD~~~~-~~~----------------------------------------------------~~ 325 (406)
T PRK09356 299 PPARLLRDAGVPVALATDFNPG-SSP----------------------------------------------------TE 325 (406)
T ss_pred chHHHHHHCCCeEEEeCCCCCC-CCh----------------------------------------------------hH
Confidence 11 1246677776310 000 01
Q ss_pred hHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCCC
Q 025866 205 NIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 240 (247)
Q Consensus 205 ~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~~ 240 (247)
++...+.......+++.+++.+..+.|.-+.+++.+
T Consensus 326 ~~~~~~~~~~~~~~l~~~~~l~~~T~~~A~~~g~~~ 361 (406)
T PRK09356 326 SLLLAMNMACTLFRLTPEEALAAVTINAARALGRQD 361 (406)
T ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhCCCC
Confidence 244444333345689999999999999999998853
No 62
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.
Probab=95.23 E-value=1.3 Score=41.30 Aligned_cols=166 Identities=16% Similarity=0.205 Sum_probs=86.3
Q ss_pred eEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHH-HcCCc--eEEeec---ccHHHHHHHHHhcCCCCCcEEEEeCCC-C
Q 025866 32 AAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAK-ELKRP--ASIHCV---RAFGDLLEIMKSVGPFPDGVIIHSYLG-S 104 (247)
Q Consensus 32 ~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~-~~~lp--v~lH~~---~a~~~~l~iLk~~~~~~~~~I~H~fsG-s 104 (247)
.++|+++...+... ........++. +..+++. .-+.| +.+|+- .+.+++.+++++.|..... ++|++.. +
T Consensus 151 ~~~g~~~~~~~~~~-~~~~~~~~~~~-~~a~~~~~~~~~~~~~~vh~~~~~~~~~~i~~~~~~~G~~~~~-~~~~~~~~~ 227 (387)
T cd01308 151 IGVGEIAISDHRSS-QPTVEELARIA-AEARVGGLLGGKAGIVHIHLGDGKRALSPIFELIEETEIPITQ-FLPTHINRT 227 (387)
T ss_pred cCcceEEEcCCCCC-CCCHHHHHHHH-HHHHHHHHhcCCCcEEEEEeCCchHHHHHHHHHHHhcCCCcce-eECCcccCC
Confidence 35778885544321 12222222222 2222322 23445 556676 5567777888887653223 3344433 4
Q ss_pred HHH---HHHHHHCCCeeeeccccccc--------ccc--------CCCCCceEEecCCCCCCCchhhccccccCCCCCCc
Q 025866 105 AEM---VPELSKLGAYFSFSGFLMSM--------KAQ--------KVPSERILLETDAPDALPKAELNSLFLVDGDPSLP 165 (247)
Q Consensus 105 ~~~---~~~~l~~G~~~Si~~~i~~~--------~~~--------~iPldriLlETD~P~~~p~~~~~~~~~~~~~~~~~ 165 (247)
.+. ..+.++.|.|+.|....... +.. .++.|+|++=||+.-..|. |...
T Consensus 228 ~~~~~~~~~~~~~G~~v~i~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~d~i~l~TD~~~~~p~-------~~~~----- 295 (387)
T cd01308 228 APLFEQGVEFAKMGGTIDLTSSIDPQFRKEGEVRPSEALKRLLEQGVPLERITFSSDGNGSLPK-------FDEN----- 295 (387)
T ss_pred HHHHHHHHHHHHcCCcEEEECCCCccccccCccChHHHHHHHHHhCCCCCcEEEEECCCCCccc-------CccC-----
Confidence 442 45677789988886432110 110 1567999999997211110 0000
Q ss_pred ccccccccCCCCCCCCCCcccccCCCCCCCCCcccCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCC
Q 025866 166 QELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 239 (247)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~ 239 (247)
|... .......- .+...+..+.+..+++++++.+.+..|.-++|++.
T Consensus 296 -----------------------g~~~---~~g~~~~~-~~~~~~~~~v~~~~i~~~~al~~~T~npA~~lg~~ 342 (387)
T cd01308 296 -----------------------GNLV---GLGVGSVD-TLLREVREAVKCGDIPLEVALRVITSNVARILKLR 342 (387)
T ss_pred -----------------------CeEE---ecCcCcHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhCCC
Confidence 0000 00011111 23333434445567999999999999999999986
No 63
>PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ]. Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A ....
Probab=95.20 E-value=0.47 Score=44.12 Aligned_cols=64 Identities=19% Similarity=0.304 Sum_probs=54.6
Q ss_pred HHHHHHHHHHcCCceEEeecc--cHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCCeeeecc
Q 025866 57 FRQQLELAKELKRPASIHCVR--AFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSG 122 (247)
Q Consensus 57 f~~qL~lA~~~~lpv~lH~~~--a~~~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~G~~~Si~~ 122 (247)
+.+.++.|.+.|+++.+|+.+ +...+++.+...... ..+.|+.-.+.+...++.++|..+++.+
T Consensus 227 l~~~v~~a~~~g~~v~vHa~gd~a~~~~l~a~~~~~~~--~~i~h~~~~~~~~~~~~~~l~~~~~~~p 292 (404)
T PF07969_consen 227 LEELVRAAREAGLQVAVHAIGDRAIDEALDAIEAARAR--GRIEHAELIDPDDIERMAELGVTASVQP 292 (404)
T ss_dssp HHHHHHHHHHCT-EEEEEEESHHHHHHHHHHHHHHTCC--HEEEEHCBCCHHHHHHHHHHTTEEEECC
T ss_pred HHHHHHHHHhcCCeeEEEEcCCchHHhHHHHHHhhccc--ceeeccccCCHHHHHHHHHhCCccccCh
Confidence 799999999999999999965 467788888887542 2678999999999999999999999987
No 64
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=95.12 E-value=0.12 Score=49.31 Aligned_cols=70 Identities=19% Similarity=0.168 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHcCCceEEeecccHHHHH-----------HHHHhcCCCCCcE-EEEeCCCCHHHHHHHHHCCCeeeecc
Q 025866 55 GVFRQQLELAKELKRPASIHCVRAFGDLL-----------EIMKSVGPFPDGV-IIHSYLGSAEMVPELSKLGAYFSFSG 122 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a~~~~l-----------~iLk~~~~~~~~~-I~H~fsGs~~~~~~~l~~G~~~Si~~ 122 (247)
+.+++..++|+++++||.+|.-....+.. +.+.+.|....+. +.||+..+.+.++.+.+.|..++.++
T Consensus 205 ~~l~~~~~lA~~~g~~i~~H~~E~~~e~~~~~~~~g~~~v~~l~~~Gll~~~~~~~H~~~~~~~d~~~la~~g~~v~~~P 284 (442)
T PRK07203 205 ATLEKCREAVKETGRGYHIHVAEGIYDVSDSHKKYGKDIVERLADFGLLGEKTLAAHCIYLSDEEIDLLKETDTFVVHNP 284 (442)
T ss_pred HHHHHHHHHHHHcCCcEEEEecCChHHHHHHHHHcCCCHHHHHHhCCCCCCCcEEEEeecCCHHHHHHHHhcCCeEEECc
Confidence 68999999999999999999998765543 4555555444444 55999999999999999999999887
Q ss_pred cc
Q 025866 123 FL 124 (247)
Q Consensus 123 ~i 124 (247)
..
T Consensus 285 ~s 286 (442)
T PRK07203 285 ES 286 (442)
T ss_pred hh
Confidence 53
No 65
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=95.06 E-value=0.39 Score=44.61 Aligned_cols=132 Identities=16% Similarity=0.211 Sum_probs=91.3
Q ss_pred HHHHHHHHHcCCceEE-eec-ccHHHHHHHHHhcC---CCCCcEEE-EeCCCCHHHHHHHHHCCCeeeecccccccc---
Q 025866 58 RQQLELAKELKRPASI-HCV-RAFGDLLEIMKSVG---PFPDGVII-HSYLGSAEMVPELSKLGAYFSFSGFLMSMK--- 128 (247)
Q Consensus 58 ~~qL~lA~~~~lpv~l-H~~-~a~~~~l~iLk~~~---~~~~~~I~-H~fsGs~~~~~~~l~~G~~~Si~~~i~~~~--- 128 (247)
++.++.+.+++.+|=+ |+- +...+++++-+.-- -...+.+. |--+-+.++++.+.+.|-.++++....+-+
T Consensus 152 k~lV~~~N~LgIiiDlSH~s~kt~~Dvl~~s~~PviaSHSN~~al~~h~RNl~D~qlkaI~~~gGvIgv~~~~~fl~~~~ 231 (313)
T COG2355 152 KELVREMNELGIIIDLSHLSDKTFWDVLDLSKAPVVASHSNARALVDHPRNLSDEQLKAIAETGGVIGVNFIPAFLRPGG 231 (313)
T ss_pred HHHHHHHHhcCCEEEecccCCccHHHHHhccCCceEEecCCchhccCCCCCCCHHHHHHHHhcCCEEEEEeehhhccCCC
Confidence 4567788888888764 443 24566665522210 00122333 556778899999999999999997654433
Q ss_pred ccC----------------CCCCceEEecCCCCCCCchhhccccccCCCCCCcccccccccCCCCCCCCCCcccccCCCC
Q 025866 129 AQK----------------VPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDS 192 (247)
Q Consensus 129 ~~~----------------iPldriLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 192 (247)
+.+ +..|.+-|=||.-+....|
T Consensus 232 ~~~atldd~v~hI~h~v~~~G~dhVglGsDf~g~~~~p------------------------------------------ 269 (313)
T COG2355 232 AARATLDDLVRHIDHFVELVGIDHVGLGSDFDGGTGPP------------------------------------------ 269 (313)
T ss_pred CCCCCHHHHHHHHHHHHHhcCcceeEecccccCCCCCc------------------------------------------
Confidence 121 6789999999997754321
Q ss_pred CCCCCcccCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhC
Q 025866 193 STLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFS 237 (247)
Q Consensus 193 ~~~~~~~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~ 237 (247)
...-.+..++...+.+. -+|.+.++++++.+.|+.|+|.
T Consensus 270 -----~gled~~~l~~l~~~L~-~~G~~e~~i~~i~~~N~lRV~~ 308 (313)
T COG2355 270 -----DGLEDVGKLPNLTAALI-ERGYSEEEIEKIAGENWLRVLK 308 (313)
T ss_pred -----hhhcChhHHHHHHHHHH-HcCCCHHHHHHHHHHhHHHHHH
Confidence 13345667999998885 4789999999999999999985
No 66
>PRK06886 hypothetical protein; Validated
Probab=94.67 E-value=1.5 Score=41.00 Aligned_cols=97 Identities=16% Similarity=0.128 Sum_probs=61.2
Q ss_pred HHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecccH---HHHHHHHH----hcCCC
Q 025866 20 STLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAF---GDLLEIMK----SVGPF 92 (247)
Q Consensus 20 ~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~---~~~l~iLk----~~~~~ 92 (247)
+.+.+-+.. +-.|| |+++... .+...-.+.+.+.+++|+++|+||-+|+-... ...++.+. +.|..
T Consensus 134 ~l~~~al~~--advvG--GiP~~~~---~~~~~~~e~l~~~~~lA~~~g~~Id~Hlde~~~~~~~~le~l~~~~~~~Gl~ 206 (329)
T PRK06886 134 KWFDIGSEM--VDMIG--GLPYRDE---LDYGRGLEAMDILLDTAKSLGKMVHVHVDQFNTPKEKETEQLCDKTIEHGMQ 206 (329)
T ss_pred HHHHHHHHh--CCEEe--CccCCcC---CCCCCCHHHHHHHHHHHHHcCCCeEEeECCCCchhHHHHHHHHHHHHHcCCC
Confidence 344444433 34566 4576521 12334467889999999999999999998742 22333333 55543
Q ss_pred CCcEEEEeCCCCHH-------HHHHHHHCCCeeeeccc
Q 025866 93 PDGVIIHSYLGSAE-------MVPELSKLGAYFSFSGF 123 (247)
Q Consensus 93 ~~~~I~H~fsGs~~-------~~~~~l~~G~~~Si~~~ 123 (247)
.+-.+.||++-+.. +++.+.+.|+.++.++.
T Consensus 207 grV~~sH~~~L~~~~~~~~~~~i~~La~agi~Vv~~P~ 244 (329)
T PRK06886 207 GRVVAIHGISIGAHSKEYRYRLYQKMREADMMVIACPM 244 (329)
T ss_pred CCEEEEEeccccCcChhhHHHHHHHHHHcCCeEEECch
Confidence 33335599976644 36777778999888774
No 67
>PTZ00124 adenosine deaminase; Provisional
Probab=94.57 E-value=3.9 Score=38.65 Aligned_cols=120 Identities=13% Similarity=0.215 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHcCCceEEeeccc--H---HHHHHHHHhcCCCCCcEEEEeCCC--CHHHHHHHHHCCCeeeeccccccc-
Q 025866 56 VFRQQLELAKELKRPASIHCVRA--F---GDLLEIMKSVGPFPDGVIIHSYLG--SAEMVPELSKLGAYFSFSGFLMSM- 127 (247)
Q Consensus 56 vf~~qL~lA~~~~lpv~lH~~~a--~---~~~l~iLk~~~~~~~~~I~H~fsG--s~~~~~~~l~~G~~~Si~~~i~~~- 127 (247)
-|...++.|++.|+++.+|+=.+ . ..+.+.+...+. . -|-|++.- +++.++.+.+.|+-+-+-+.....
T Consensus 207 ~f~~~f~~Ar~~Gl~~t~HaGE~~~~~~~~~v~~ai~~l~~--~-RIGHG~~~~~d~~l~~~l~~~~I~lEvCPtSN~~~ 283 (362)
T PTZ00124 207 PFKDIFDYVREAGVNLTVHAGEDVTLPNLNTLYSAIQVLKV--K-RIGHGIRVAESQELIDMVKEKDILLEVCPISNVLL 283 (362)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCCCCcchhHHHHHHHhCC--C-ccccccccCCCHHHHHHHHHcCCeEEECCcchhhh
Confidence 48889999999999999999763 1 345666666654 2 25688864 688999999999888877643211
Q ss_pred ccc--------------CCCCCceEEecCCCCCCCchhhccccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCC
Q 025866 128 KAQ--------------KVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSS 193 (247)
Q Consensus 128 ~~~--------------~iPldriLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 193 (247)
+.. .+| +.+-||.|-+. |
T Consensus 284 ~~v~~~~~HPi~~l~~~Gv~---v~InTDDp~~~-----------------------------------------~---- 315 (362)
T PTZ00124 284 NNAKSMDTHPIRKLYDAGVK---VSVNSDDPGMF-----------------------------------------L---- 315 (362)
T ss_pred hcCCchhhHHHHHHHHCCCc---EEEeCCCcccc-----------------------------------------C----
Confidence 110 133 78888887642 1
Q ss_pred CCCCcccCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhh
Q 025866 194 TLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLF 236 (247)
Q Consensus 194 ~~~~~~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f 236 (247)
.++.+=++.+++..|++.+++.+...+=..-.|
T Consensus 316 ----------t~l~~Ey~~~~~~~gls~~~l~~l~~nai~asF 348 (362)
T PTZ00124 316 ----------TNINDDYEELYTHLNFTLADFMKMNEWALEKSF 348 (362)
T ss_pred ----------CChhHHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 135566777888899999999988665555445
No 68
>PRK09229 N-formimino-L-glutamate deiminase; Validated
Probab=94.47 E-value=1.9 Score=41.45 Aligned_cols=68 Identities=18% Similarity=0.206 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHcCCceEEeecccHHHHH-----------HHHHhcCCCCCc-EEEEeCCCCHHHHHHHHHCCCeeeecc
Q 025866 55 GVFRQQLELAKELKRPASIHCVRAFGDLL-----------EIMKSVGPFPDG-VIIHSYLGSAEMVPELSKLGAYFSFSG 122 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a~~~~l-----------~iLk~~~~~~~~-~I~H~fsGs~~~~~~~l~~G~~~Si~~ 122 (247)
+.+++..++| ++|+|+.+|+-....++. +.+.+.+....+ .+.||..-+.+.++.+.+.|..+++.+
T Consensus 216 e~l~~~~~~A-~~g~~i~~H~~e~~~e~~~~~~~~g~~~~~~l~~~g~l~~~~~l~H~~~l~~~d~~~la~~g~~v~~~P 294 (456)
T PRK09229 216 DQLAAVLALA-APDGPVHIHIAEQTKEVDDCLAWSGARPVEWLLDHAPVDARWCLVHATHLTDAETARLARSGAVAGLCP 294 (456)
T ss_pred HHHHHHHHHh-cCCCceEEEeCCCHHHHHHHHHHcCCCHHHHHHHcCCCCCCeEEEeeccCCHHHHHHHHHcCCeEEECc
Confidence 6888899999 999999999976544433 334444443334 456999999999999999999999988
Q ss_pred c
Q 025866 123 F 123 (247)
Q Consensus 123 ~ 123 (247)
.
T Consensus 295 ~ 295 (456)
T PRK09229 295 T 295 (456)
T ss_pred h
Confidence 5
No 69
>PRK06846 putative deaminase; Validated
Probab=94.36 E-value=2.7 Score=39.79 Aligned_cols=93 Identities=16% Similarity=0.101 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHcCCceEEeecccH-------HHHHHHHHhcCCCCCcEEEEeCC---CCHHHHH----HHHHCCCee
Q 025866 53 QVGVFRQQLELAKELKRPASIHCVRAF-------GDLLEIMKSVGPFPDGVIIHSYL---GSAEMVP----ELSKLGAYF 118 (247)
Q Consensus 53 Q~~vf~~qL~lA~~~~lpv~lH~~~a~-------~~~l~iLk~~~~~~~~~I~H~fs---Gs~~~~~----~~l~~G~~~ 118 (247)
..+.|++.+++|+++|+|+.+|..... +++++.+.+.+......+.||.. -+.+.+. .+.+.|..+
T Consensus 204 ~~~~l~~~~~lA~~~g~~v~~Hv~e~~~~~~~~~~~~~~~~~~~gl~~~v~~~H~~~l~~~~~~e~~~li~~la~~g~~v 283 (410)
T PRK06846 204 IEKSLDTMFQIAVDFNKGVDIHLHDTGPLGVATIKYLVETTEEAQWKGKVTISHAFALGDLNEEEVEELAERLAAQGISI 283 (410)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEECCCCChhHHHHHHHHHHHHHhCCCCCEEEEecchhhcCCHHHHHHHHHHHHHcCCeE
Confidence 347899999999999999999988642 45677888877544334559974 2555554 466779887
Q ss_pred eecccccc--ccccCC--CCCceEEecCCCC
Q 025866 119 SFSGFLMS--MKAQKV--PSERILLETDAPD 145 (247)
Q Consensus 119 Si~~~i~~--~~~~~i--PldriLlETD~P~ 145 (247)
+.+..+.. ...+++ --=++-+=||+|-
T Consensus 284 ~~~~~~~~g~~p~~~l~~~Gv~v~lGtD~~~ 314 (410)
T PRK06846 284 TSTVPIGRLHMPIPLLHDKGVKVSLGTDSVI 314 (410)
T ss_pred EEeCCCCCCCCCHHHHHhCCCeEEEecCCCC
Confidence 65322110 000110 0125788899874
No 70
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=94.36 E-value=1.7 Score=43.24 Aligned_cols=64 Identities=23% Similarity=0.330 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHcCCceEEeec-------ccHHHH---HHHHHhcCCC-------CCcEEEEeCCCCH--------HH
Q 025866 53 QVGVFRQQLELAKELKRPASIHCV-------RAFGDL---LEIMKSVGPF-------PDGVIIHSYLGSA--------EM 107 (247)
Q Consensus 53 Q~~vf~~qL~lA~~~~lpv~lH~~-------~a~~~~---l~iLk~~~~~-------~~~~I~H~fsGs~--------~~ 107 (247)
-+++.....+.+.++++|..||.. +..+.+ +++.+..+.. -..+-||+|.|.. +.
T Consensus 207 p~~ii~~l~~~~~~lg~ph~iH~h~nnlg~pgn~~~t~~t~~~~~~~~~~~~~~~~h~tH~qfhsyg~~~~~~~~s~a~~ 286 (541)
T cd01304 207 PREILKGLAEANEELGLPHSIHVHCNNLGVPGNYETTLETMKAAEGVKPDPRRQVLHLTHVQFHSYGGTSWRDFESGAER 286 (541)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEccccCCCCCcHHHHHHHHHHhhcCCCccccceeEeeeeeEEeeccCCcccHhHHHHH
Confidence 367889999999999999999988 445544 4455555321 1135679998873 34
Q ss_pred HHHHHHCCC
Q 025866 108 VPELSKLGA 116 (247)
Q Consensus 108 ~~~~l~~G~ 116 (247)
+.++++.+-
T Consensus 287 i~~~~n~~~ 295 (541)
T cd01304 287 IADYVNAND 295 (541)
T ss_pred HHHHHHcCC
Confidence 455555543
No 71
>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA. Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.
Probab=93.82 E-value=0.37 Score=46.24 Aligned_cols=70 Identities=14% Similarity=0.109 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHcCCceEEeecccHHHH-----------HHHHHhcCCCCCcE-EEEeCCCCHHHHHHHHHCCCeeeecc
Q 025866 55 GVFRQQLELAKELKRPASIHCVRAFGDL-----------LEIMKSVGPFPDGV-IIHSYLGSAEMVPELSKLGAYFSFSG 122 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a~~~~-----------l~iLk~~~~~~~~~-I~H~fsGs~~~~~~~l~~G~~~Si~~ 122 (247)
+.++...++|+++++|+.+|+-....++ ++.|.+.|....+. +.||..-+.+.++.+-+.|..++..|
T Consensus 204 ~~l~~~~~lA~~~~~~i~~H~~E~~~e~~~~~~~~g~~~~~~l~~~G~l~~~~~~~H~~~~~~~d~~~la~~g~~v~~cP 283 (441)
T TIGR03314 204 AGLEMCREAVQATGRGFHIHVAEDIYDVEDSHHKYGKDIVERLADFGLLGSKTLAAHCIYLSDREIELLNETDTFVVHNP 283 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHcCCCHHHHHHHCCCCCCCeEEEEEecCCHHHHHHHHHcCCcEEECH
Confidence 6788999999999999999999876543 35666666544444 55999999999999999999999888
Q ss_pred cc
Q 025866 123 FL 124 (247)
Q Consensus 123 ~i 124 (247)
..
T Consensus 284 ~s 285 (441)
T TIGR03314 284 ES 285 (441)
T ss_pred HH
Confidence 43
No 72
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=93.80 E-value=0.82 Score=42.08 Aligned_cols=35 Identities=9% Similarity=0.151 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCCCC
Q 025866 205 NIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEGS 241 (247)
Q Consensus 205 ~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~~~ 241 (247)
.++.++. +.+ .+++++.+.+.+..|.-|+||+.+.
T Consensus 266 ~l~~~~~-~~~-~~l~l~~~v~~~s~nPA~i~gl~~~ 300 (335)
T cd01294 266 ALPYLAE-VFE-EHNALDKLEAFASDNGPNFYGLPPN 300 (335)
T ss_pred HHHHHHH-HHh-ccCCHHHHHHHHHhHHHHHhCCCCC
Confidence 5566653 334 5899999999999999999999543
No 73
>PRK10027 cryptic adenine deaminase; Provisional
Probab=93.78 E-value=1.9 Score=43.49 Aligned_cols=157 Identities=13% Similarity=0.099 Sum_probs=107.5
Q ss_pred HHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecccHHHHHHHHHhcCCCCCcEE
Q 025866 18 WFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVI 97 (247)
Q Consensus 18 ~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~~~l~iLk~~~~~~~~~I 97 (247)
..+.+.+++..+.++++||+ .||-.. .....+++.+.. .| .++++-=|++...+.-|...-..|....
T Consensus 167 ~~~~~~~~l~~~~v~glgEv-Mn~~~V-----~~~d~~~~~ki~-~~--~~~~idGH~p~l~g~~L~ay~aaGi~sD--- 234 (588)
T PRK10027 167 TLEQMLAWRDHPQVTGLAEM-MDYPGV-----ISGQNALLDKLD-AF--RHLTLDGHCPGLGGKELNAYIAAGIENC--- 234 (588)
T ss_pred CHHHHHHHhcCCCceeEEec-cCcccc-----ccCCHHHHHHHH-Hh--CCCceECCCCCCChHHHHHHHHcCCCCC---
Confidence 46788888989999999996 454322 223345565555 33 8999999999988887776666654321
Q ss_pred EEeCCCCHHHHHHHHHCCCeeeecccccccccc-------CCCCCceEEecCCCCCCCchhhccccccCCCCCCcccccc
Q 025866 98 IHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQ-------KVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSA 170 (247)
Q Consensus 98 ~H~fsGs~~~~~~~l~~G~~~Si~~~i~~~~~~-------~iPldriLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~ 170 (247)
|-.+ +.+++.+=+++|.|+-+=.....++-. +.+.+|+.+=||.-. |....
T Consensus 235 -HE~~-t~eea~eklr~Gm~v~iRegS~~~nl~~l~~~~~~~~~~~~~l~TDd~~--~~~l~------------------ 292 (588)
T PRK10027 235 -HESY-QLEEGRRKLQLGMSLMIREGSAARNLNALAPLINEFNSPQCMLCTDDRN--PWEIA------------------ 292 (588)
T ss_pred -cccC-CHHHHHHHHHCCCEEEEeCCccccCHHHHHHHhhccCCCeEEEEcCCCC--hHHHH------------------
Confidence 5443 578888888899998774321111111 123367888888632 21110
Q ss_pred cccCCCCCCCCCCcccccCCCCCCCCCcccCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCC
Q 025866 171 KEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 239 (247)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~ 239 (247)
+.| .+...++.+.+..|+++++..+..+.|.-+.|++.
T Consensus 293 ----------------~~G---------------hi~~~vr~av~~~Gi~~~~Ai~mAT~nPA~~lgl~ 330 (588)
T PRK10027 293 ----------------HEG---------------HIDALIRRLIEQHNVPLHVAYRVASWSTARHFGLN 330 (588)
T ss_pred ----------------hcc---------------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCC
Confidence 013 68888888888889999999999999999999996
No 74
>PRK14085 imidazolonepropionase; Provisional
Probab=93.61 E-value=1.4 Score=41.24 Aligned_cols=129 Identities=13% Similarity=0.072 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHcCCceEEeecccH-HHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCCeeeeccccccccccCCC
Q 025866 55 GVFRQQLELAKELKRPASIHCVRAF-GDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQKVP 133 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a~-~~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~G~~~Si~~~i~~~~~~~iP 133 (247)
+.+++.++.|.++|+|+.+|+-+.. ..-++.+.+.+.. .+-|+..-+.+.++.+.+.|..+++.+.........++
T Consensus 207 ~~l~~~~~~a~~~g~~v~~H~~~~~~~~~v~~~~~~g~~---~i~H~~~l~~~~~~~la~~gv~~~~~P~~~~~~~~~~~ 283 (382)
T PRK14085 207 DQSRRVLTAGRAAGLGLRVHGNQLGPGPGVRLAVELGAA---SVDHCTYLTDADVDALAGSGTVATLLPGAEFSTRQPYP 283 (382)
T ss_pred HHHHHHHHHHHHcCCCeEEEeCcccCChHHHHHHHcCCC---cHHHhCCCCHHHHHHHHHcCCEEEECcHHHHhcCCCCc
Confidence 5667888999999999999987532 1223444445532 35699988999999999999988877642111110000
Q ss_pred --------CCceEEecCCCCCCCchhhccccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCCCcccCcchh
Q 025866 134 --------SERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPAN 205 (247)
Q Consensus 134 --------ldriLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n~P~~ 205 (247)
-=++.+=||++...+. ...
T Consensus 284 ~~~~l~~aGv~v~lgsD~~~~~~~-----------------------------------------------------~~~ 310 (382)
T PRK14085 284 DARRLLDAGVTVALASDCNPGSSY-----------------------------------------------------TSS 310 (382)
T ss_pred hHHHHHHCCCcEEEEeCCCCCCCh-----------------------------------------------------HHH
Confidence 1147788887421110 012
Q ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCC
Q 025866 206 IHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 239 (247)
Q Consensus 206 l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~ 239 (247)
+...+.......+++++++.+..+.|.-+++++.
T Consensus 311 ~~~~~~~~~~~~~l~~~~al~~aT~~~A~~lg~~ 344 (382)
T PRK14085 311 MPFCVALAVRQMGMTPAEAVWAATAGGARALRRD 344 (382)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 3333333344568999999999999999999885
No 75
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=93.00 E-value=3 Score=38.16 Aligned_cols=128 Identities=15% Similarity=0.182 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHcCCceEEeeccc-HHHHHHHHHhcCCCCCcEEE-EeCCCC---------HHHHHHHH-HCCCeeeecc
Q 025866 55 GVFRQQLELAKELKRPASIHCVRA-FGDLLEIMKSVGPFPDGVII-HSYLGS---------AEMVPELS-KLGAYFSFSG 122 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a-~~~~l~iLk~~~~~~~~~I~-H~fsGs---------~~~~~~~l-~~G~~~Si~~ 122 (247)
..|++-++-...+|+++-++.-.. ..+.+..+.+... ..+|+ ||=.-. ...+.++. .-++|+=++|
T Consensus 124 ~~~r~~~~rL~~~gl~fdl~~~~~ql~~~i~l~~~~Pd--~~~VldH~G~p~~~~~~~~~w~~~m~~la~~pNv~~KlSG 201 (279)
T COG3618 124 PAWRANVERLAKLGLHFDLQVDPHQLPDLIPLALKAPD--VNFVLDHCGRPDIKINLEDPWKAALARLARRPNVWAKLSG 201 (279)
T ss_pred HHHHHHHHHHHhcCCeEEEEeChhhhHHHHHHHhhCCC--CCEEeccCCCCCccccccCHHHHHHHHHHhCCCeEEEEee
Confidence 788999999999999988887643 3455555555421 45677 773210 01122222 2489999999
Q ss_pred cccccccc---C------------CCCCceEEecCCCCCCCchhhccccccCCCCCCcccccccccCCCCCCCCCCcccc
Q 025866 123 FLMSMKAQ---K------------VPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFH 187 (247)
Q Consensus 123 ~i~~~~~~---~------------iPldriLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (247)
...+.... . .|.||++-=||.|-+.-
T Consensus 202 ~~~~~~~~w~~~~v~p~~e~~i~~fg~dR~vfGSdwPv~~l--------------------------------------- 242 (279)
T COG3618 202 VYAYSDESWTVEDVRPYVEELIELFGWDRFVFGSDWPVTSL--------------------------------------- 242 (279)
T ss_pred ecccccCCCCHHHHHHHHHHHHHhcCccceEecCCCCcccc---------------------------------------
Confidence 66543221 0 68999999999998632
Q ss_pred cCCCCCCCCCcccCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCC
Q 025866 188 ASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSY 238 (247)
Q Consensus 188 ~g~~~~~~~~~~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~ 238 (247)
..+....+..+.+.+ -+ +.++-.++..+|+.|+|++
T Consensus 243 -----------~~~~~~~~~~~~~~v---~~-~~~er~~i~~~NA~rly~~ 278 (279)
T COG3618 243 -----------ESDFASWVAATRELV---PG-DAAERARILVDNARRLYRL 278 (279)
T ss_pred -----------cCChHHHHHHHHHHc---CC-CHHHHHHHHhhCHHHHhCC
Confidence 112222333333332 33 7999999999999999986
No 76
>TIGR02022 hutF formiminoglutamate deiminase. In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate.
Probab=92.95 E-value=4.5 Score=38.98 Aligned_cols=69 Identities=19% Similarity=0.252 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHcCCceEEeecccHHHH-----------HHHHHhcCCCCCcE-EEEeCCCCHHHHHHHHHCCCeeeecc
Q 025866 55 GVFRQQLELAKELKRPASIHCVRAFGDL-----------LEIMKSVGPFPDGV-IIHSYLGSAEMVPELSKLGAYFSFSG 122 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a~~~~-----------l~iLk~~~~~~~~~-I~H~fsGs~~~~~~~l~~G~~~Si~~ 122 (247)
+.+++..+ |+++++|+.+|+-....++ ++.+.+.|....+. +.||..-+.+.++.+.+.|..+++.+
T Consensus 216 e~l~~~~~-a~~~g~~v~~H~~e~~~e~~~~~~~~G~~~v~~l~~~g~l~~~~~~~H~~~l~~~d~~~la~~g~~v~~~P 294 (455)
T TIGR02022 216 EQLAAVLQ-ASDRQAPVHIHVAEQQKEVDDCLAWSGRRPVEWLLDHGPVDARWCLVHATHLTDEETALLARSGAVAGLCP 294 (455)
T ss_pred HHHHHHHH-HHhCCCceEEEECCChHHHHHHHHHhCCCHHHHHHHcCCCCCCEEEEEeecCCHHHHHHHHHcCCeEEECh
Confidence 45666667 6789999999997655443 34455555444444 55999999999999999999999988
Q ss_pred cc
Q 025866 123 FL 124 (247)
Q Consensus 123 ~i 124 (247)
..
T Consensus 295 ~s 296 (455)
T TIGR02022 295 TT 296 (455)
T ss_pred hh
Confidence 53
No 77
>PRK09061 D-glutamate deacylase; Validated
Probab=92.86 E-value=0.76 Score=45.20 Aligned_cols=91 Identities=21% Similarity=0.233 Sum_probs=59.8
Q ss_pred ChhHHHHHHHHhh---cCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecccH-----------H
Q 025866 15 TPNWFSTLKEFFE---ITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAF-----------G 80 (247)
Q Consensus 15 ~~~~l~~l~~~l~---~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~-----------~ 80 (247)
+.+.++.+.+++. +..+.+|+ +|++|... .-...+.+.++.|+++|.|+.+|+++.. .
T Consensus 164 t~~el~~m~~ll~~al~~Ga~gis-~~~~y~p~-------~~~~eL~~l~~~A~~~g~~v~~H~e~~~~~~~~~e~~av~ 235 (509)
T PRK09061 164 TPAELAEILELLEQGLDEGALGIG-IGAGYAPG-------TGHKEYLELARLAARAGVPTYTHVRYLSNVDPRSSVDAYQ 235 (509)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEe-cCCccCCC-------CCHHHHHHHHHHHHHcCCEEEEEecCcccCCchhHHHHHH
Confidence 3566788888876 34566776 56776431 1335688888999999999999999642 4
Q ss_pred HHHHHHHhcCCCCCcE-EEEeCCCC-------HHHHHHHHHCCC
Q 025866 81 DLLEIMKSVGPFPDGV-IIHSYLGS-------AEMVPELSKLGA 116 (247)
Q Consensus 81 ~~l~iLk~~~~~~~~~-I~H~fsGs-------~~~~~~~l~~G~ 116 (247)
+++++.+..+. ++ |.|.-+.. .+.++++.+.|.
T Consensus 236 ~~i~lA~~~G~---rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi 276 (509)
T PRK09061 236 ELIAAAAETGA---HMHICHVNSTSLRDIDRCLALVEKAQAQGL 276 (509)
T ss_pred HHHHHHHHhCC---CEEEEeeccCCcccHHHHHHHHHHHHHcCC
Confidence 45666676653 34 44776521 345666666674
No 78
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=92.44 E-value=0.52 Score=43.71 Aligned_cols=91 Identities=13% Similarity=0.212 Sum_probs=62.9
Q ss_pred EeCCCCHHHHHHHHHCCCeeeeccccccccc----c-C--------------CCCCceEEecCCCCCCCchhhccccccC
Q 025866 99 HSYLGSAEMVPELSKLGAYFSFSGFLMSMKA----Q-K--------------VPSERILLETDAPDALPKAELNSLFLVD 159 (247)
Q Consensus 99 H~fsGs~~~~~~~l~~G~~~Si~~~i~~~~~----~-~--------------iPldriLlETD~P~~~p~~~~~~~~~~~ 159 (247)
|.-+-+.++++.+.+.|..++++..-.+-+. . . +..|++=+=||.......+
T Consensus 210 h~RNltDe~iraia~~GGviGi~~~~~fl~~~~~~~~~~~~~~~Hi~y~~~l~G~dhVgiGsDfdg~~~~~--------- 280 (320)
T PF01244_consen 210 HPRNLTDEQIRAIAERGGVIGINFYPAFLGDDWDPRASLDDLVDHIDYIVDLVGIDHVGIGSDFDGIDGPP--------- 280 (320)
T ss_dssp -TTSB-HHHHHHHHHTT-EEEEESSHHHHSTTHSSG-BHHHHHHHHHHHHHHH-GGGEEEE--BTTTSSHB---------
T ss_pred CCCCCCHHHHHHHHHCCcEEEEEcchhhhcccccccccHHHHHHHHHHHHHhcCCCeEEECcccCCCCCCC---------
Confidence 4446678999999999999999865322111 1 0 6779999999994332111
Q ss_pred CCCCCcccccccccCCCCCCCCCCcccccCCCCCCCCCcccCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhC
Q 025866 160 GDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFS 237 (247)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~ 237 (247)
.....|..++.+.+.+.+ +|.|.+++.+++..|+.|+|.
T Consensus 281 --------------------------------------~gl~~~~~~~~l~~~L~~-rG~s~~~i~kI~g~N~lRv~~ 319 (320)
T PF01244_consen 281 --------------------------------------EGLEDPSDLPNLTEELLK-RGYSEEDIEKILGGNFLRVLR 319 (320)
T ss_dssp --------------------------------------BTBSSGGGHHHHHHHHHH-TTS-HHHHHHHHTHHHHHHHH
T ss_pred --------------------------------------CccCCHHHHHHHHHHHHH-CCCCHHHHHHHHhHhHHHHhc
Confidence 145568899999999976 999999999999999999984
No 79
>PRK09230 cytosine deaminase; Provisional
Probab=92.35 E-value=3.5 Score=39.46 Aligned_cols=71 Identities=17% Similarity=0.250 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHcCCceEEeeccc-------HHHHHHHHHhcCCCCCcE-EEEeCCC-------CHHHHHHHHHCCCe
Q 025866 53 QVGVFRQQLELAKELKRPASIHCVRA-------FGDLLEIMKSVGPFPDGV-IIHSYLG-------SAEMVPELSKLGAY 117 (247)
Q Consensus 53 Q~~vf~~qL~lA~~~~lpv~lH~~~a-------~~~~l~iLk~~~~~~~~~-I~H~fsG-------s~~~~~~~l~~G~~ 117 (247)
-.+.|+..+++|+++++|+.+|+-.. ...+.+++.+.+. ..++ +-||..- +.+.++.+.+.|+-
T Consensus 193 ~~e~l~~~~~~A~~~g~~~~~H~~E~~~~~~~~~~~~~~~~~~~gl-~~~v~~~H~~~l~~~~~~~~~~~~~~La~~gv~ 271 (426)
T PRK09230 193 GVESLHKAFALAQKYDRLIDVHCDEIDDEQSRFVETVAALAHREGM-GARVTASHTTAMHSYNGAYTSRLFRLLKMSGIN 271 (426)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEECCCCCcchHHHHHHHHHHHHhCC-CCCEEEEecCchhcCCHHHHHHHHHHHHHcCCe
Confidence 46789999999999999999998753 2345778888774 3344 4498876 46788888889988
Q ss_pred eeecccc
Q 025866 118 FSFSGFL 124 (247)
Q Consensus 118 ~Si~~~i 124 (247)
+...|..
T Consensus 272 vv~cP~s 278 (426)
T PRK09230 272 FVANPLV 278 (426)
T ss_pred EEECcch
Confidence 8877643
No 80
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=92.32 E-value=1.8 Score=40.40 Aligned_cols=61 Identities=15% Similarity=0.077 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHcCCceEEeecccHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCCeeeec
Q 025866 55 GVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFS 121 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a~~~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~G~~~Si~ 121 (247)
+-+++.+++|+++|+||..|+-...+.+-+..+ .|. ..+- |--+.+.++.+.+.|.++..+
T Consensus 163 ~~~~~iv~~A~~~gl~vasH~d~~~~~v~~a~~-~Gv---~~~E--~p~t~e~a~~a~~~G~~vv~g 223 (325)
T cd01306 163 ANRSELAALARARGIPLASHDDDTPEHVAEAHE-LGV---VISE--FPTTLEAAKAARELGLQTLMG 223 (325)
T ss_pred HHHHHHHHHHHHCCCcEEEecCCChHHHHHHHH-CCC---eecc--CCCCHHHHHHHHHCCCEEEec
Confidence 457788899999999999999765554444444 343 1222 346889999999999998865
No 81
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=92.17 E-value=9.1 Score=34.93 Aligned_cols=124 Identities=20% Similarity=0.240 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHcC-CceEEeeccc--HHHHHHHHHhcCCCCCcEEEEeCCCCH--HHHHHHHHCCCeeeeccccccc-
Q 025866 54 VGVFRQQLELAKELK-RPASIHCVRA--FGDLLEIMKSVGPFPDGVIIHSYLGSA--EMVPELSKLGAYFSFSGFLMSM- 127 (247)
Q Consensus 54 ~~vf~~qL~lA~~~~-lpv~lH~~~a--~~~~l~iLk~~~~~~~~~I~H~fsGs~--~~~~~~l~~G~~~Si~~~i~~~- 127 (247)
..-|...++.|++.+ +++.+|+-.. ...+.+.+.-. + .-|-|++.-.. +.++.+.+.|+-+.+.+.....
T Consensus 152 ~~~f~~~~~~ar~~g~l~~t~HaGE~~~~~~v~~~~~~~---~-~RIgHg~~~~~~p~~~~~l~~~~i~ie~CP~SN~~~ 227 (305)
T cd00443 152 LRDFYSYYEYARRLGLLGLTLHCGETGNREELLQALLLL---P-DRIGHGIFLLKHPELIYLVKLRNIPIEVCPTSNVVL 227 (305)
T ss_pred HHHHHHHHHHHHHcCCcceEEeecCCCChHHHHHHHHhc---c-ceeeceEecCCCHHHHHHHHHcCCEEEECcchhhhh
Confidence 366788899999999 9999998864 33455555432 1 23668886655 8889999999988887743211
Q ss_pred ccc----CCCC-------CceEEecCCCCCCCchhhccccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCC
Q 025866 128 KAQ----KVPS-------ERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLP 196 (247)
Q Consensus 128 ~~~----~iPl-------driLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 196 (247)
... .-|+ =.+-+-||.|-...
T Consensus 228 ~~~~~~~~hP~~~~~~~G~~v~i~TDd~~~~~------------------------------------------------ 259 (305)
T cd00443 228 GTVQSYEKHPFMRFFKAGLPVSLSTDDPGIFG------------------------------------------------ 259 (305)
T ss_pred cCCCChhhChHHHHHHCCCeEEEeCCCCcccC------------------------------------------------
Confidence 110 1111 14777887774310
Q ss_pred CcccCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhh
Q 025866 197 KETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLF 236 (247)
Q Consensus 197 ~~~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f 236 (247)
.++.+=+..++...|++.+++.++..+=...-|
T Consensus 260 -------~~l~~E~~~~~~~~~l~~~~l~~l~~nsi~~sf 292 (305)
T cd00443 260 -------TSLSEEYSLAAKTFGLTFEDLCELNRNSVLSSF 292 (305)
T ss_pred -------CChHHHHHHHHHHcCcCHHHHHHHHHHHHHHhc
Confidence 146666777888899999999888754444444
No 82
>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.
Probab=91.53 E-value=5.4 Score=37.93 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCC
Q 025866 204 ANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 239 (247)
Q Consensus 204 ~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~ 239 (247)
..++..+..+.+..+++++++.+.+..|.-++|++.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~pa~~~g~~ 373 (447)
T cd01315 338 LGLPVMLTEAVNKRGLSLEDIARLMCENPAKLFGLS 373 (447)
T ss_pred HhHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCC
Confidence 346666665656678999999999999999999996
No 83
>PRK05985 cytosine deaminase; Provisional
Probab=90.55 E-value=6 Score=37.05 Aligned_cols=90 Identities=12% Similarity=0.039 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHcCCceEEeecccH----HHH---HHHHHhcCCCCCcEEEEeCCC---CH----HHHHHHHHCCCeeee
Q 025866 55 GVFRQQLELAKELKRPASIHCVRAF----GDL---LEIMKSVGPFPDGVIIHSYLG---SA----EMVPELSKLGAYFSF 120 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a~----~~~---l~iLk~~~~~~~~~I~H~fsG---s~----~~~~~~l~~G~~~Si 120 (247)
+.+.+.+++|+++|+|+.+|+.... ..+ ++..++.+......+-|+..- +. +.++.+.+.|..++.
T Consensus 191 ~~l~~~~~~A~~~g~~i~~Hv~e~~d~~~~~~~~~~e~~~~~g~~~~~~i~H~~~l~~~~~~~~~~~i~~lae~g~~v~~ 270 (391)
T PRK05985 191 GQLDIVFGLAERHGVGIDIHLHEPGELGAFQLERIAARTRALGMQGRVAVSHAFCLGDLPEREVDRLAERLAEAGVAIMT 270 (391)
T ss_pred HHHHHHHHHHHHhCCCcEEeeCCCCCccHHHHHHHHHHHHHhCCCCCEehhhhhhhhcCCHHHHHHHHHHHHHcCCeEEE
Confidence 7888899999999999999987542 233 444444553222244588643 22 345777778998877
Q ss_pred cccccc--cccc---CCCCCceEEecCCCC
Q 025866 121 SGFLMS--MKAQ---KVPSERILLETDAPD 145 (247)
Q Consensus 121 ~~~i~~--~~~~---~iPldriLlETD~P~ 145 (247)
++.... ...+ +-. =++.+=||++-
T Consensus 271 ~~~~~~~~~~~~~l~~~G-v~v~lGtD~~~ 299 (391)
T PRK05985 271 NAPGSVPVPPVAALRAAG-VTVFGGNDGIR 299 (391)
T ss_pred eCCCCCCCCCHHHHHHCC-CeEEEecCCCC
Confidence 642210 0000 111 25888999754
No 84
>PRK15446 phosphonate metabolism protein PhnM; Provisional
Probab=89.59 E-value=3.3 Score=39.16 Aligned_cols=61 Identities=15% Similarity=0.065 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHcCCceEEeecccHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCCeeeec
Q 025866 55 GVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFS 121 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a~~~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~G~~~Si~ 121 (247)
+.+++.+++|+++|+||..|+-...+. ++...+.|. ..+.| ..+.++++.+.+.|.++..+
T Consensus 214 e~i~~~v~~A~~~g~~v~sH~~~~~~~-i~~a~~~Gv---~~~e~--~~~~e~~~~~~~~g~~v~~~ 274 (383)
T PRK15446 214 PNRRAIAALARARGIPLASHDDDTPEH-VAEAHALGV---AIAEF--PTTLEAARAARALGMSVLMG 274 (383)
T ss_pred HHHHHHHHHHHHCCCceeecCCCCHHH-HHHHHHcCC---ceeeC--CCcHHHHHHHHHCCCEEEeC
Confidence 556788889999999999998544444 344444453 23334 44688888888889887654
No 85
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=89.27 E-value=2.7 Score=39.94 Aligned_cols=72 Identities=18% Similarity=0.221 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHcCCceEEeecccHHHHHHHHH-----------hcCCCC-CcEEEEeCCCCHHHHHHHHHCCCeeee
Q 025866 53 QVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMK-----------SVGPFP-DGVIIHSYLGSAEMVPELSKLGAYFSF 120 (247)
Q Consensus 53 Q~~vf~~qL~lA~~~~lpv~lH~~~a~~~~l~iLk-----------~~~~~~-~~~I~H~fsGs~~~~~~~l~~G~~~Si 120 (247)
..+.++...++|+++|+||.+|+-...+++...++ ..+... ..+.+||...+.+....+.+.|.-++.
T Consensus 196 ~~~~~~~~~~l~~~~~~~v~iH~~E~~~e~~~~~~~~g~~~~~~~~~~g~l~~~~~~~H~~~~~~~e~~~l~~~g~~v~~ 275 (421)
T COG0402 196 SPELLESLDELARKYGLPVHIHLAETLDEVERVLEPYGARPVERLDLLGLLGSHTLLAHCVHLSEEELELLAESGASVVH 275 (421)
T ss_pred CHHHHHHHHHHHhcCCCceEEEecCcHHHHHHHHhhcCCCHHHHHHHcCCCCCCeEEEEeccCCHHHHHHHhhCCCeEEE
Confidence 34667777788889999999999998777666555 444332 335669999999999888889999988
Q ss_pred cccc
Q 025866 121 SGFL 124 (247)
Q Consensus 121 ~~~i 124 (247)
.|..
T Consensus 276 cP~s 279 (421)
T COG0402 276 CPRS 279 (421)
T ss_pred Ccch
Confidence 8754
No 86
>PLN02795 allantoinase
Probab=89.18 E-value=13 Score=36.43 Aligned_cols=40 Identities=13% Similarity=0.021 Sum_probs=32.1
Q ss_pred ccCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCC
Q 025866 199 TLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 239 (247)
Q Consensus 199 ~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~ 239 (247)
-..-...++.++..+. -.+++++++.+.+..|.-++|+++
T Consensus 389 ~~gle~~l~~~~~~~~-~~~l~l~~~v~~~s~~pA~~~gl~ 428 (505)
T PLN02795 389 ISSLQFVLPATWTAGR-AYGLTLEQLARWWSERPAKLAGLD 428 (505)
T ss_pred ceeHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhCCC
Confidence 3444567888887664 466999999999999999999994
No 87
>TIGR02033 D-hydantoinase D-hydantoinase. This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme.
Probab=89.04 E-value=4.8 Score=38.22 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCC
Q 025866 205 NIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 239 (247)
Q Consensus 205 ~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~ 239 (247)
.++..++.+.....++.+++.+.+..|.-++|++.
T Consensus 344 ~l~~l~~~~v~~~~~~~~~~~~~~t~~pa~~~gl~ 378 (454)
T TIGR02033 344 RMTLLFDEGVATGRITLEKFVELTSTNPAKIFNMY 378 (454)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHhhHHHHHcCCC
Confidence 45555555544566999999999999999999984
No 88
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=88.85 E-value=8.8 Score=35.81 Aligned_cols=155 Identities=13% Similarity=0.089 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCCceEEeecccHH--HHHHHHHhcCCCC-CcEEEEeCCCCHHHHHHHHHCCCeeeeccccc
Q 025866 49 DFMDQVGVFRQQLELAKELKRPASIHCVRAFG--DLLEIMKSVGPFP-DGVIIHSYLGSAEMVPELSKLGAYFSFSGFLM 125 (247)
Q Consensus 49 ~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~--~~l~iLk~~~~~~-~~~I~H~fsGs~~~~~~~l~~G~~~Si~~~i~ 125 (247)
+.........+.+++|+++++|+.++-....+ ++++..++.|..- .-+..|+..-+.+.+ -..|.++.+++.+.
T Consensus 166 p~~~e~~~v~~~~~la~~~~~~i~i~h~ss~~~l~~i~~~~~~G~~~~~e~~~h~L~ld~~~~---~~~~~~~k~~Pplr 242 (374)
T cd01317 166 PPEAETIMVARDLELAEATGARVHFQHLSTARSLELIRKAKAKGLPVTAEVTPHHLLLDDEAL---ESYDTNAKVNPPLR 242 (374)
T ss_pred CHHHHHHHHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHHHHCCCCEEEEecHHHHhcCHHHH---hccCCceEEcCCCC
Confidence 34455668889999999999999985554332 3444455544321 123447765555543 23577777766443
Q ss_pred cccccC-----C-CCCceEEecCCCCCCCchhhccccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCCCcc
Q 025866 126 SMKAQK-----V-PSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKET 199 (247)
Q Consensus 126 ~~~~~~-----i-PldriLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 199 (247)
..+... + --.-..+=||....... ....-+| ..+.+-
T Consensus 243 ~~~~~~~l~~~~~~G~i~~igsDh~p~~~~-~k~~~~~------------------------------------~~~~Gi 285 (374)
T cd01317 243 SEEDREALIEALKDGTIDAIASDHAPHTDE-EKDLPFA------------------------------------EAPPGI 285 (374)
T ss_pred CHHHHHHHHHHHhcCCceEEEcCCCCCCHH-HccCCHh------------------------------------hCCCcH
Confidence 211111 1 11235777887432110 0000000 000012
Q ss_pred cCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCCCCcc
Q 025866 200 LNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEGSKI 243 (247)
Q Consensus 200 ~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~~~~~ 243 (247)
.+--..++..++.+.+...++.+++.+.+..|.-++|++..+.|
T Consensus 286 ~g~e~~l~~~~~~~~~~~~~~~~~~~~~~t~npA~~lgl~~G~l 329 (374)
T cd01317 286 IGLETALPLLWTLLVKGGLLTLPDLIRALSTNPAKILGLPPGRL 329 (374)
T ss_pred hHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCCcc
Confidence 22233566677666666678999999999999999999865444
No 89
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=87.50 E-value=8.1 Score=38.76 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=21.4
Q ss_pred cCCCHHHHHHHHHHHHHHhhCCC
Q 025866 217 LDMTKEELAELSYRNAIRLFSYE 239 (247)
Q Consensus 217 ~~~s~e~l~~~~~~N~~~~f~~~ 239 (247)
|.++++++++.++.|.=++|++.
T Consensus 428 Re~sL~EI~~mtTanPAkaLGL~ 450 (556)
T TIGR03121 428 REYSLYEIAIMTRAGPAKLLGLT 450 (556)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCC
Confidence 56899999999999999999995
No 90
>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM. This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs.
Probab=87.19 E-value=24 Score=33.26 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHcCCceEEeecccHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCCeeeec
Q 025866 55 GVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFS 121 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a~~~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~G~~~Si~ 121 (247)
+.+.+.+++|+++++||..|.-.+.+.+-+. ++.|. ..+-|. -+.++++.+.+.|.++..+
T Consensus 209 e~i~~~v~~A~~~G~~v~sH~~~~~e~i~~a-~~~Gv---~~~E~~--~t~e~a~~~~~~G~~v~~~ 269 (376)
T TIGR02318 209 ANRSEIAALARARGIPLASHDDDTPEHVAEA-HDLGV---TISEFP--TTLEAAKEARSLGMQILMG 269 (376)
T ss_pred HHHHHHHHHHHHCCCeEEEecCCCHHHHHHH-HHCCC---ChhccC--CCHHHHHHHHHcCCeEEEC
Confidence 5567788889999999999986555554443 33343 223354 4788999999999997755
No 91
>COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism]
Probab=86.76 E-value=14 Score=37.23 Aligned_cols=159 Identities=18% Similarity=0.221 Sum_probs=112.1
Q ss_pred HHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecccHHHHHHHHHhcCCCCCcEE
Q 025866 18 WFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVI 97 (247)
Q Consensus 18 ~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~~~l~iLk~~~~~~~~~I 97 (247)
..+.+.+++..+.|+++||+ .||-.. .+.... .-.-|+.|++.+++|-=|++...+..|.-....|....
T Consensus 159 ~a~~i~e~~~~p~Vigl~E~-Mn~pgV-----i~~D~~-~l~kl~a~~~~~k~VdGHapgl~g~~Ln~Y~aaGi~tD--- 228 (584)
T COG1001 159 TAEDIKELLEHPEVIGLGEM-MNFPGV-----IEGDPD-MLAKLEAARKAGKPVDGHAPGLSGKELNAYIAAGISTD--- 228 (584)
T ss_pred cHHHHHHHhhCCCccchhhh-cCCchh-----ccCCHH-HHHHHHHHHHcCCeecccCCCCChHHHHHHHhcCCCcC---
Confidence 47889999999999999997 444321 222233 34568899999999999999998887777777665322
Q ss_pred EEeCCCCHHHHHHHHHCCCeeeec-cccccccc------cCCCCCceEEecCCCCCCCchhhccccccCCCCCCcccccc
Q 025866 98 IHSYLGSAEMVPELSKLGAYFSFS-GFLMSMKA------QKVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSA 170 (247)
Q Consensus 98 ~H~fsGs~~~~~~~l~~G~~~Si~-~~i~~~~~------~~iPldriLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~ 170 (247)
|=. -+.|++.+=+++|.|+.+= |+....-. ...+-.|+++=||.-. |.-.
T Consensus 229 -HE~-~t~EEa~~klr~Gm~i~iReGS~a~dl~~l~~~i~e~~~~~~~lcTDD~~--p~dl------------------- 285 (584)
T COG1001 229 -HES-TTAEEALEKLRLGMKIMIREGSAAKDLAALLPAITELGSRRVMLCTDDRH--PDDL------------------- 285 (584)
T ss_pred -ccc-CCHHHHHHHHhCCcEEEEEcCchhhhHHHHHHHHhhcCCceEEEECCCCC--hhHh-------------------
Confidence 433 2677888888899999986 54322100 1245588999998733 2100
Q ss_pred cccCCCCCCCCCCcccccCCCCCCCCCcccCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCCC
Q 025866 171 KEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 240 (247)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~~ 240 (247)
.+.| ++.++++.. --.|+++.+..+..+-|+-+.|++.+
T Consensus 286 ---------------~~eG---------------hld~~vR~A-i~~Gv~p~~a~qmAtiN~A~~~gl~~ 324 (584)
T COG1001 286 ---------------LEEG---------------HLDRLVRRA-IEEGVDPLDAYQMATINPAEHYGLDD 324 (584)
T ss_pred ---------------hhcC---------------CHHHHHHHH-HHcCCCHHHHHHHHhcCHHHHcCCcc
Confidence 0113 677888744 55799999999999999999999984
No 92
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=86.66 E-value=3.7 Score=37.96 Aligned_cols=86 Identities=12% Similarity=0.139 Sum_probs=63.2
Q ss_pred CCCHHHHHHHHHCCCeeeecccccccc----cc-------------CCCCCceEEecCCCCCCCchhhccccccCCCCCC
Q 025866 102 LGSAEMVPELSKLGAYFSFSGFLMSMK----AQ-------------KVPSERILLETDAPDALPKAELNSLFLVDGDPSL 164 (247)
Q Consensus 102 sGs~~~~~~~l~~G~~~Si~~~i~~~~----~~-------------~iPldriLlETD~P~~~p~~~~~~~~~~~~~~~~ 164 (247)
+-+.++++.+.+.|..++++....+-+ .. .+..|++-+=||.-.....+
T Consensus 207 NltD~~i~~ia~~GGvigi~~~~~fl~~~~~~~~~~~~~hi~~i~~l~G~dhVgiGsDfdg~~~~~-------------- 272 (309)
T cd01301 207 NLTDAQLKAIAETGGVIGVNFYPAFLSPGADATLDDVVRHIDYIVDLIGIDHVGLGSDFDGIGGTP-------------- 272 (309)
T ss_pred CCCHHHHHHHHHcCCEEEEeeeHHHhCCCCCCCHHHHHHHHHHHHHhcCCCeEEECcccCCCCCCc--------------
Confidence 457788999999999999886432211 11 16789999999985532110
Q ss_pred cccccccccCCCCCCCCCCcccccCCCCCCCCCcccCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Q 025866 165 PQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRL 235 (247)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~ 235 (247)
.....+..++.+.+.+.+ +|.|.+++.+++..|+.|+
T Consensus 273 ---------------------------------~gl~~~~~~~~l~~~L~~-rG~s~~~i~~i~g~N~lRv 309 (309)
T cd01301 273 ---------------------------------GGLEDVSDLPNLTAELLE-RGYSEEEIEKIAGGNFLRV 309 (309)
T ss_pred ---------------------------------cccCCHHHHHHHHHHHHH-cCCCHHHHHHHHhhchhcC
Confidence 123456789999998865 9999999999999999875
No 93
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=86.53 E-value=12 Score=36.03 Aligned_cols=123 Identities=17% Similarity=0.117 Sum_probs=80.3
Q ss_pred HHHHHHHHHcCCceEEeecccHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHH--CCC-eeeeccccccc-cccCCC
Q 025866 58 RQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSK--LGA-YFSFSGFLMSM-KAQKVP 133 (247)
Q Consensus 58 ~~qL~lA~~~~lpv~lH~~~a~~~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~--~G~-~~Si~~~i~~~-~~~~iP 133 (247)
++.++-|.+.++||-+|.-+.. .+ ++.-+.+. ..+-|...-+.+.+..+.+ .|. +....+...+. +....+
T Consensus 223 ~~~l~~a~~~g~~v~~HA~~~~-g~-~~A~~~g~---~s~~H~~~ld~~~~~~~a~~~~g~~~~~l~p~~~~~l~e~~~~ 297 (406)
T COG1228 223 RAVLAAALKAGIPVKAHAHGAD-GI-KLAIRLGA---KSAEHGTLLDHETAALLAEKGAGTPVPVLLPRTKFELRELDYK 297 (406)
T ss_pred HHHHHHHHHCCCceEEEecccc-hH-HHHHHhCc---ceehhhhhcCHhHHHHHhhccCCCccccccchhhhhhhcccch
Confidence 8889999999999999999887 22 23333332 2345887778889999999 665 22222211111 111000
Q ss_pred --------CCceEEecCCCCCCCchhhccccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCCCcccCcchh
Q 025866 134 --------SERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPAN 205 (247)
Q Consensus 134 --------ldriLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n~P~~ 205 (247)
-=.+-+=||.|.... ..+
T Consensus 298 ~~~~l~~~GV~vai~TD~~~~~~------------------------------------------------------~~~ 323 (406)
T COG1228 298 PARKLIDAGVKVAIGTDHNPGTS------------------------------------------------------HGS 323 (406)
T ss_pred hHHHHHHCCCEEEEEcCCCCCch------------------------------------------------------hhH
Confidence 013667777765310 335
Q ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCCC
Q 025866 206 IHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 240 (247)
Q Consensus 206 l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~~ 240 (247)
+...+...+... ++++|..+.++-|+-+.+++.+
T Consensus 324 l~~~m~l~~~~g-mtp~EaL~a~T~naA~alG~~~ 357 (406)
T COG1228 324 LALEMALAVRLG-MTPEEALKAATINAAKALGLAD 357 (406)
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCcc
Confidence 777776666655 9999999999999999999863
No 94
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=85.69 E-value=31 Score=32.26 Aligned_cols=66 Identities=14% Similarity=0.058 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHcC--CceEEeecccH-------HHHHHHHHhcCCCCCcEEEEeCCC--CHHHHHHHHHCCCeeeecc
Q 025866 54 VGVFRQQLELAKELK--RPASIHCVRAF-------GDLLEIMKSVGPFPDGVIIHSYLG--SAEMVPELSKLGAYFSFSG 122 (247)
Q Consensus 54 ~~vf~~qL~lA~~~~--lpv~lH~~~a~-------~~~l~iLk~~~~~~~~~I~H~fsG--s~~~~~~~l~~G~~~Si~~ 122 (247)
-.-|..+++.|++.+ +++.+|+=... ..+.+.+ ..+.. | |=|++.- +++.++.+.+.|+-+-+-+
T Consensus 178 ~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~~~~~~~v~~al-~lg~~--R-IGHG~~~~~dp~ll~~l~~~~I~lEvCP 253 (345)
T cd01321 178 LLDFLPQLLWFPKQCAEIPFFFHAGETNGDGTETDENLVDAL-LLNTK--R-IGHGFALPKHPLLMDLVKKKNIAIEVCP 253 (345)
T ss_pred HHHHHHHHHHHHHhCCCCceEeecCCCcCCCCCChhHHHHHH-HhCCC--c-CccccccCcCHHHHHHHHHcCCeEEECc
Confidence 357788889999999 99999997653 3566666 45432 2 3466654 4888899999998887776
Q ss_pred c
Q 025866 123 F 123 (247)
Q Consensus 123 ~ 123 (247)
.
T Consensus 254 t 254 (345)
T cd01321 254 I 254 (345)
T ss_pred c
Confidence 4
No 95
>PRK08417 dihydroorotase; Provisional
Probab=85.10 E-value=21 Score=33.58 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=33.6
Q ss_pred cCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCCCCcc
Q 025866 200 LNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEGSKI 243 (247)
Q Consensus 200 ~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~~~~~ 243 (247)
..--..++-.+..+....+++++++.+.+..|.-++|++..+.|
T Consensus 296 ~g~e~~~~~~~~~~v~~~~~~~~~~~~~~t~~pA~~lgl~~G~l 339 (386)
T PRK08417 296 DSICEYFSLCYTYLVKEGIITWSELSRFTSYNPAQFLGLNSGEI 339 (386)
T ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCCCCCcc
Confidence 33444667777666566679999999999999999999965444
No 96
>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=84.51 E-value=4.4 Score=40.41 Aligned_cols=102 Identities=19% Similarity=0.168 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHcCCceEEeecc--cHHHHHHHHHhcCC----CCC-cEEEEeCCCCHHHHHHHHHCCCeeeeccc
Q 025866 51 MDQVGVFRQQLELAKELKRPASIHCVR--AFGDLLEIMKSVGP----FPD-GVIIHSYLGSAEMVPELSKLGAYFSFSGF 123 (247)
Q Consensus 51 ~~Q~~vf~~qL~lA~~~~lpv~lH~~~--a~~~~l~iLk~~~~----~~~-~~I~H~fsGs~~~~~~~l~~G~~~Si~~~ 123 (247)
-...+-|++.++-|.+.|+|+.+|+-+ |.+.+|+.+++... ... --|.|.=.-++++++++.++|..+|+-+.
T Consensus 317 l~~~e~l~~~v~~a~~~gl~v~vHAiGD~Av~~~LdafE~~~~~~~~~~~r~rieH~~~v~~~~i~R~~~Lgv~~svQP~ 396 (535)
T COG1574 317 LLTEEELEELVRAADERGLPVAVHAIGDGAVDAALDAFEKARKKNGLKGLRHRIEHAELVSPDQIERFAKLGVIASVQPN 396 (535)
T ss_pred ccCHHHHHHHHHHHHHCCCcEEEEEechHHHHHHHHHHHHHhhhcCCccCCceeeeeeecCHhHHHHHHhcCceEeeccc
Confidence 455788999999999999999999997 56778877776542 111 24779999999999999999999999875
Q ss_pred ccccc-------c--c---C-CCC-------CceEEecCCCCCCCchhh
Q 025866 124 LMSMK-------A--Q---K-VPS-------ERILLETDAPDALPKAEL 152 (247)
Q Consensus 124 i~~~~-------~--~---~-iPl-------driLlETD~P~~~p~~~~ 152 (247)
..+.- . . . .|. =.+-.=||+|-+.+.|..
T Consensus 397 f~~~~~~~~~~rlG~~r~~~~~p~~~ll~~G~~la~gSD~Pv~~~dP~~ 445 (535)
T COG1574 397 FLFSDGEWYVDRLGEERASRSYPFRSLLKAGVPLAGGSDAPVEPYDPWL 445 (535)
T ss_pred cccccchHHHHhhhhhhhhccCcHHHHHHCCCeEeccCCCCCCCCChHH
Confidence 43311 0 0 0 121 225567899887766653
No 97
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=84.33 E-value=21 Score=34.11 Aligned_cols=150 Identities=17% Similarity=0.097 Sum_probs=81.5
Q ss_pred CHHHHHHHHHHHHHHHHHcCCceEE-eeccc-HHHHHHHHHhcCCCCCc--EEEEeCCCCHHHHHHHHHCCCeeeecccc
Q 025866 49 DFMDQVGVFRQQLELAKELKRPASI-HCVRA-FGDLLEIMKSVGPFPDG--VIIHSYLGSAEMVPELSKLGAYFSFSGFL 124 (247)
Q Consensus 49 ~~~~Q~~vf~~qL~lA~~~~lpv~l-H~~~a-~~~~l~iLk~~~~~~~~--~I~H~fsGs~~~~~~~l~~G~~~Si~~~i 124 (247)
+...+.....+.+++|+++++||.+ |.-.. .-++++.+++.+. +.. ...|+..-+.+.+ .+.|.++.+++.+
T Consensus 210 p~~ae~~~~~~~~~la~~~g~~vhi~Hiss~~~~~~i~~~~~~g~-~it~e~~ph~l~l~~~~~---~~~~~~~~~~Ppl 285 (443)
T TIGR03178 210 PVFAEVEAIRRTLALAKVTGCRVHVVHLSSAEAVELITEAKQEGL-DVTVETCPHYLTLTAEEV---PDGGTLAKCAPPI 285 (443)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCC-cEEEEECccceEecHHHh---hCcCcceEEcCCC
Confidence 4566778899999999999999844 55432 2233444444442 111 1245543333332 2357777777754
Q ss_pred ccccccC-----C-CCCceEEecCC-CCCCCchhhccccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCCC
Q 025866 125 MSMKAQK-----V-PSERILLETDA-PDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPK 197 (247)
Q Consensus 125 ~~~~~~~-----i-PldriLlETD~-P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 197 (247)
.....++ + ---...|=||. |+....... .+ +. ..+.
T Consensus 286 r~~~~~~~l~~~l~~G~i~~i~SDh~p~~~~~K~~-------------~~-----------------------~~-~~~~ 328 (443)
T TIGR03178 286 RDLANQEGLWEALLNGLIDCVVSDHSPCTPDLKRA-------------GD-----------------------FF-KAWG 328 (443)
T ss_pred CChHHHHHHHHHHHcCCccEEeCCCCCCChHHcCc-------------CC-----------------------hh-hCCC
Confidence 3221111 1 11124677887 553211000 00 00 0000
Q ss_pred cccCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCC
Q 025866 198 ETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 239 (247)
Q Consensus 198 ~~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~ 239 (247)
+....-..++..+..+..-.+++++++.+.+..|.-++|++.
T Consensus 329 G~~g~e~~l~~~~~~~~~~~~l~~~~~~~~~t~~pA~~~g~~ 370 (443)
T TIGR03178 329 GIAGLQSTLDVMFDEAVQKRGLPLEDIARLMATNPAKRFGLA 370 (443)
T ss_pred CeeEHHHhHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHcCCC
Confidence 111122345666655545678999999999999999999984
No 98
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=84.17 E-value=20 Score=31.68 Aligned_cols=110 Identities=15% Similarity=0.167 Sum_probs=61.1
Q ss_pred ecccccCCC-ChhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHH-------HHHHHHH-HcCCceEEee-
Q 025866 6 FIFRFVQER-TPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFR-------QQLELAK-ELKRPASIHC- 75 (247)
Q Consensus 6 ~hP~~~~~~-~~~~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~-------~qL~lA~-~~~lpv~lH~- 75 (247)
+.|...... +.++...+.+.+.+. +-+| |+|+.+.... ..-...|....+ ..++-.+ ..++|+++++
T Consensus 6 ~i~y~~~G~p~~~~~~~~~~~l~~~-ad~i-Elgip~sdp~-adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y 82 (244)
T PRK13125 6 LVVYLTAGYPNVESFKEFIIGLVEL-VDIL-ELGIPPKYPK-YDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTY 82 (244)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHhh-CCEE-EECCCCCCCC-CCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEe
Confidence 455544433 344444555555555 5566 9999987542 223445554433 2333333 3678987764
Q ss_pred ----cccHHHHHHHHHhcCCCCCcEEEEe--C---CCCHHHHHHHHHCCCeeee
Q 025866 76 ----VRAFGDLLEIMKSVGPFPDGVIIHS--Y---LGSAEMVPELSKLGAYFSF 120 (247)
Q Consensus 76 ----~~a~~~~l~iLk~~~~~~~~~I~H~--f---sGs~~~~~~~l~~G~~~Si 120 (247)
.....+.++.+++.|. ..+++|. + ....+.++.+.++|+-.++
T Consensus 83 ~n~~~~~~~~~i~~~~~~Ga--dgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~ 134 (244)
T PRK13125 83 LEDYVDSLDNFLNMARDVGA--DGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVF 134 (244)
T ss_pred cchhhhCHHHHHHHHHHcCC--CEEEECCCCCCcHHHHHHHHHHHHHcCCCEEE
Confidence 3455667777788774 3577885 3 1223444555667765544
No 99
>PRK08323 phenylhydantoinase; Validated
Probab=83.10 E-value=39 Score=32.16 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCC
Q 025866 205 NIHNVLDYVASLLDMTKEELAELSYRNAIRLFSY 238 (247)
Q Consensus 205 ~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~ 238 (247)
.++..++....-..++.+++.+.++.|.-++|++
T Consensus 342 ~~~~l~~~~~~~~~~~~~~~~~~~t~~pA~~lgl 375 (459)
T PRK08323 342 RMPLLFSEGVMTGRITLNRFVELTSTNPAKIFGL 375 (459)
T ss_pred hHHHHHHHHHHcCCCCHHHHHHHHhhHHHHHhCC
Confidence 3555554444446699999999999999999998
No 100
>PRK08044 allantoinase; Provisional
Probab=81.81 E-value=18 Score=34.89 Aligned_cols=149 Identities=15% Similarity=0.103 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCce-EEeecccH-HHHHHHHHhcCCCCCc--EEEEeCCCCHHHHHHHHHCCCeeeecccc
Q 025866 49 DFMDQVGVFRQQLELAKELKRPA-SIHCVRAF-GDLLEIMKSVGPFPDG--VIIHSYLGSAEMVPELSKLGAYFSFSGFL 124 (247)
Q Consensus 49 ~~~~Q~~vf~~qL~lA~~~~lpv-~lH~~~a~-~~~l~iLk~~~~~~~~--~I~H~fsGs~~~~~~~l~~G~~~Si~~~i 124 (247)
+.........+.+.+|++++.|+ +.|.-... -+++.-.++.|. +.. +..|+..-+.+.+. +.|..+-+++.+
T Consensus 216 P~~~E~~~v~r~~~lA~~~g~~vhi~HiSt~~~~~~i~~ak~~G~-~it~e~~~h~L~l~~~~~~---~~~~~~k~~PPl 291 (449)
T PRK08044 216 PVFTEVEAIRRVLYLAKVAGCRLHVCHISSPEGVEEVTRARQEGQ-DVTCESCPHYFVLDTDQFE---EIGTLAKCSPPI 291 (449)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCC-CEEEEcChhhhcccHHHhh---CCCCcEEEcCCC
Confidence 55667788999999999999998 56776432 223333344442 111 23577665655433 357777777755
Q ss_pred ccccccC-----C-CCCceEEecCC-CCCCCchhhccccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCCC
Q 025866 125 MSMKAQK-----V-PSERILLETDA-PDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPK 197 (247)
Q Consensus 125 ~~~~~~~-----i-PldriLlETD~-P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 197 (247)
.....++ + --.--.|-||- |+....... .|.. .+.
T Consensus 292 r~~~d~~aL~~~l~~G~id~i~sDH~P~~~~~K~~---~~~~-----------------------------------~~~ 333 (449)
T PRK08044 292 RDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAG---NIME-----------------------------------AWG 333 (449)
T ss_pred CChHHHHHHHHHHhCCCceEEEcCCCCCChHHccC---Chhh-----------------------------------CCC
Confidence 4322211 1 11234556763 432110000 0000 000
Q ss_pred cccCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCC
Q 025866 198 ETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 239 (247)
Q Consensus 198 ~~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~ 239 (247)
+-..--..++..+..+....+++++++.+.+..|.-++|++.
T Consensus 334 g~~g~e~~l~~~~~~~v~~~~l~~~~~v~~~s~npA~~lgl~ 375 (449)
T PRK08044 334 GIAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQ 375 (449)
T ss_pred CceEHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhHHHHhCCC
Confidence 011112356667766667788999999999999999999994
No 101
>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3.5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A ....
Probab=80.50 E-value=35 Score=30.98 Aligned_cols=152 Identities=15% Similarity=0.210 Sum_probs=88.7
Q ss_pred ChhHHHHHHHHhhc---CCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeeccc--HHHHHHHHHhc
Q 025866 15 TPNWFSTLKEFFEI---TPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRA--FGDLLEIMKSV 89 (247)
Q Consensus 15 ~~~~l~~l~~~l~~---~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a--~~~~l~iLk~~ 89 (247)
.+++.+.+.++... ..+++|+=.|-..... + .. |....+.|++.++++.+|+=.. ...+.+.+...
T Consensus 146 ~~~~~~~~~~~~~~~~~~~vvG~dl~g~E~~~~----~-~~----~~~~~~~a~~~gl~~t~HaGE~~~~~~~~~ai~~l 216 (331)
T PF00962_consen 146 PDEWAEEIVELASKYPDKGVVGFDLAGDEDGGP----P-LK----FAPAFRKAREAGLKLTVHAGETGGPEHIRDAILLL 216 (331)
T ss_dssp THHHHHHHHHHHHHTTTTTEEEEEEESSTTSTT----G-GG----HHHHHHHHHHTT-EEEEEESSSSTHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHhhcccceEEEEEecCCcccCc----h-HH----HHHHHhhhcccceeecceecccCCcccccchhhhc
Confidence 44555555555533 2466776666554321 1 11 8888889999999999999653 44566666665
Q ss_pred CCCCCcEEEEeCCC--CHHHHHHHHHCCCeeeecccccc-----ccccCCCC-------CceEEecCCCCCCCchhhccc
Q 025866 90 GPFPDGVIIHSYLG--SAEMVPELSKLGAYFSFSGFLMS-----MKAQKVPS-------ERILLETDAPDALPKAELNSL 155 (247)
Q Consensus 90 ~~~~~~~I~H~fsG--s~~~~~~~l~~G~~~Si~~~i~~-----~~~~~iPl-------driLlETD~P~~~p~~~~~~~ 155 (247)
+. . -|=|++.- +++.++.+.+.++-+-+.+.... ..-.+-|+ =.+-|-||.|-+.
T Consensus 217 ~~--~-RIgHG~~~~~~p~l~~~~~~~~I~iEvcptSN~~~~~~~~~~~hP~~~~~~~gv~v~i~TDd~~~~-------- 285 (331)
T PF00962_consen 217 GA--D-RIGHGVRLIKDPELLELLAERQIPIEVCPTSNVQLGAVPSYEEHPLRKLLDAGVPVSINTDDPGVF-------- 285 (331)
T ss_dssp T---S-EEEE-GGGGGSHHHHHHHHHTT-EEEE-HHHHHHTTSSSTGGG-CHHHHHHTT-EEEE--BSHHHH--------
T ss_pred cc--e-eecchhhhhhhhHHHHHHHHhCCCeeeCCCcCcccceeeecchhHHHHHHHcCCceeccCCCcccc--------
Confidence 53 2 36688844 57778888899998888774211 11111111 1367777776531
Q ss_pred cccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCCCcccCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Q 025866 156 FLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIR 234 (247)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~ 234 (247)
| .++..=+..+++..|++.+++.+... |+.+
T Consensus 286 ---------------------------------~--------------~~l~~ey~~~~~~~~l~~~~l~~l~~-nsi~ 316 (331)
T PF00962_consen 286 ---------------------------------G--------------TTLSDEYYLAAEAFGLSLADLKQLAR-NSIE 316 (331)
T ss_dssp ---------------------------------T---------------SHHHHHHHHHHHHT--HHHHHHHHH-HHHH
T ss_pred ---------------------------------C--------------CCcHHHHHHHHHHcCCCHHHHHHHHH-HHHH
Confidence 1 13667777788888999999988766 5544
No 102
>PRK07369 dihydroorotase; Provisional
Probab=80.00 E-value=15 Score=35.22 Aligned_cols=151 Identities=12% Similarity=0.131 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHHHHHHHHcCCceEEeecccHHHHHHH---HHhcCCC-CCcEEEEeCCCCHHHHHHHHHCCCeeeecccc
Q 025866 49 DFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEI---MKSVGPF-PDGVIIHSYLGSAEMVPELSKLGAYFSFSGFL 124 (247)
Q Consensus 49 ~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~~~l~i---Lk~~~~~-~~~~I~H~fsGs~~~~~~~l~~G~~~Si~~~i 124 (247)
+.........+.++||+..+.||.|-.+.. .+-+++ .|+.|.. ..-+..|+..-+.+.+ .+.|.++=++|.+
T Consensus 208 p~~aE~~av~r~~~la~~~~~~~hi~HvSs-~~~~~~i~~ak~~g~~vt~Ev~phhL~l~~~~~---~~~~~~~kv~PPL 283 (418)
T PRK07369 208 PASAETTALAALLELVAAIGTPVHLMRIST-ARSVELIAQAKARGLPITASTTWMHLLLDTEAL---ASYDPNLRLDPPL 283 (418)
T ss_pred CHHHHHHHHHHHHHHHHHHCCcEEEEeCCC-HHHHHHHHHHHHcCCCeEEEecHHHHhccHHHH---hccCCCcEECCCC
Confidence 456777788899999999999976544433 333444 4444321 1123457765555443 2356566667755
Q ss_pred ccccccC-----C---CCCceEEecCC-CCCCCchhhccccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCC
Q 025866 125 MSMKAQK-----V---PSERILLETDA-PDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTL 195 (247)
Q Consensus 125 ~~~~~~~-----i---PldriLlETD~-P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 195 (247)
.....++ + -.| ++=||- |+..... . .++. ..
T Consensus 284 R~~~d~~aL~~~l~~G~Id--~i~SDHaP~~~~~K-~-------------~~~~------------------------~~ 323 (418)
T PRK07369 284 GNPSDRQALIEGVRTGVID--AIAIDHAPYTYEEK-T-------------VAFA------------------------EA 323 (418)
T ss_pred CCHHHHHHHHHHHhcCCCC--EEEcCCCCCCHHHc-c-------------CCHh------------------------HC
Confidence 4332221 1 124 566664 3321000 0 0000 00
Q ss_pred CCcccCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCCCCcc
Q 025866 196 PKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEGSKI 243 (247)
Q Consensus 196 ~~~~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~~~~~ 243 (247)
+.+-..--..++..++.+....+++++++.+.+..|.-++|++..+.|
T Consensus 324 ~~G~~G~e~~l~~~~~~~v~~~~i~l~~~v~~~s~nPA~~lgl~~G~i 371 (418)
T PRK07369 324 PPGAIGLELALPLLWQNLVETGELSALQLWQALSTNPARCLGQEPPSL 371 (418)
T ss_pred CCCceeHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhHHHHhCCCcCcc
Confidence 011333455788888777777889999999999999999999975444
No 103
>PRK06189 allantoinase; Provisional
Probab=79.92 E-value=38 Score=32.50 Aligned_cols=149 Identities=15% Similarity=0.128 Sum_probs=78.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCce-EEeecccHHHHHHHHHhcCCCCCc----EEEEeCCCCHHHHHHHHHCCCeeeeccc
Q 025866 49 DFMDQVGVFRQQLELAKELKRPA-SIHCVRAFGDLLEIMKSVGPFPDG----VIIHSYLGSAEMVPELSKLGAYFSFSGF 123 (247)
Q Consensus 49 ~~~~Q~~vf~~qL~lA~~~~lpv-~lH~~~a~~~~l~iLk~~~~~~~~----~I~H~fsGs~~~~~~~l~~G~~~Si~~~ 123 (247)
|...+.....+.+.+|++.++|| +.|.-. .+-++++++.+..... +..|+-.-+.+.+. ..|.++.+++.
T Consensus 213 P~~~E~~~v~~~l~la~~~g~~~hi~HiSt--~~~~~~i~~~k~~g~~vt~ev~ph~L~l~~~~~~---~~~~~~~~~Pp 287 (451)
T PRK06189 213 PVVAELEAVQRALLYAQETGCPLHFVHISS--GKAVALIAEAKKRGVDVSVETCPHYLLFTEEDFE---RIGAVAKCAPP 287 (451)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCEEEEECCC--HHHHHHHHHHHHCCCcEEEEeCHHHhhcCHhHhh---CcCCceEEeCC
Confidence 33456677889999999999997 344433 3344444433211111 12365444444332 24666666664
Q ss_pred cccccccC-----C-CCCceEEecCC-CCCCCchhhccccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCC
Q 025866 124 LMSMKAQK-----V-PSERILLETDA-PDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLP 196 (247)
Q Consensus 124 i~~~~~~~-----i-PldriLlETD~-P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 196 (247)
+.....+. + --.-..|=||. |+. +.- . .. .+ +. ..+
T Consensus 288 lr~~~~~~~L~~~l~~G~i~~i~sDh~p~~-~~~-K--------~~---~~-----------------------~~-~~~ 330 (451)
T PRK06189 288 LRSRSQKEELWRGLLAGEIDMISSDHSPCP-PEL-K--------EG---DD-----------------------FF-LVW 330 (451)
T ss_pred CCChhhHHHHHHHHhCCCceEEECCCCCCC-HHH-c--------Cc---CC-----------------------cc-cCC
Confidence 43221111 1 11234677887 331 110 0 00 00 00 000
Q ss_pred CcccCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCC
Q 025866 197 KETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 239 (247)
Q Consensus 197 ~~~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~ 239 (247)
.+...--..++..+..+..-.+++++++.+.+..|.-++|++.
T Consensus 331 ~G~~g~e~~l~~~~~~~~~~~~l~~~~~~~~~t~npA~~lgl~ 373 (451)
T PRK06189 331 GGISGGQSTLLVMLTEGYIERGIPLETIARLLATNPAKRFGLP 373 (451)
T ss_pred CCceeHHHHHHHHHHHHHhcCCCCHHHHHHHHhhhHHHHhCCC
Confidence 0112222456666665545567999999999999999999995
No 104
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=78.57 E-value=55 Score=31.05 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCC
Q 025866 205 NIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 239 (247)
Q Consensus 205 ~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~ 239 (247)
.++..++....-..++.+++.+.+..|.-++|++.
T Consensus 342 ~l~~l~~~~~~~~~~~~~~~~~~~t~~pA~~~gl~ 376 (447)
T cd01314 342 RMPLLWSEGVAKGRITLEKFVELTSTNPAKIFGLY 376 (447)
T ss_pred hHHHHHHHHHHcCCCCHHHHHHHHhhHHHHHhCCC
Confidence 45555555444557999999999999999999983
No 105
>PRK13404 dihydropyrimidinase; Provisional
Probab=76.91 E-value=31 Score=33.55 Aligned_cols=160 Identities=10% Similarity=0.073 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCce-EEeecccH-HHHHHHHHhcCCC-CCcEEEEeCCCCHHHHHHHHHCCCeeeeccccc
Q 025866 49 DFMDQVGVFRQQLELAKELKRPA-SIHCVRAF-GDLLEIMKSVGPF-PDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLM 125 (247)
Q Consensus 49 ~~~~Q~~vf~~qL~lA~~~~lpv-~lH~~~a~-~~~l~iLk~~~~~-~~~~I~H~fsGs~~~~~~~l~~G~~~Si~~~i~ 125 (247)
+.........+.+++|++++.|| ++|.--+. -+++..++..|.. ..-+..|+..-+.+.....-..|.++.+++.+.
T Consensus 215 p~~~E~~~v~~~~~la~~~g~~~hi~Hvs~~~~~~~i~~~k~~g~~vt~e~~ph~L~l~~~~~~~~~~~g~~~k~~Pplr 294 (477)
T PRK13404 215 PMLAEREATHRAIALAELVDVPILIVHVSGREAAEQIRRARGRGLKIFAETCPQYLFLTAEDLDRPGMEGAKYICSPPPR 294 (477)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEChhhhccCHHHhcCccccCCceEECCCCC
Confidence 45667778899999999999998 66766432 2344444444421 001223565555544322111578888888654
Q ss_pred cccccC-----CC-CCceEEecCC-CCCCCchhhccccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCCCc
Q 025866 126 SMKAQK-----VP-SERILLETDA-PDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKE 198 (247)
Q Consensus 126 ~~~~~~-----iP-ldriLlETD~-P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 198 (247)
....+. +- -.-=.|=||- |+...... + +.... .. ..+ .....+
T Consensus 295 ~~~d~~aL~~~l~~G~id~i~sDHap~~~~eK~--~------~~~~~-----~~----------------~~~-~~~~~G 344 (477)
T PRK13404 295 DKANQEAIWNGLADGTFEVFSSDHAPFRFDDTD--G------KLAAG-----AN----------------PSF-KAIANG 344 (477)
T ss_pred ChHHHHHHHHHHhCCCceEEecCCCCCCcccch--h------hhhcc-----CC----------------CCH-hhCCCC
Confidence 332211 11 0112355664 33210000 0 00000 00 000 000011
Q ss_pred ccCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCC
Q 025866 199 TLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSY 238 (247)
Q Consensus 199 ~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~ 238 (247)
...--..++..++.+..-.+++++++.+.+..|.-++|++
T Consensus 345 ~~gie~~l~~ll~~~v~~~~ls~~~~~~~~t~~pA~~lgl 384 (477)
T PRK13404 345 IPGIETRLPLLFSEGVVKGRISLNRFVALTSTNPAKLYGL 384 (477)
T ss_pred cccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCC
Confidence 2222234666666655556799999999999999999999
No 106
>PRK09357 pyrC dihydroorotase; Validated
Probab=76.79 E-value=67 Score=30.26 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCCCCcc
Q 025866 204 ANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEGSKI 243 (247)
Q Consensus 204 ~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~~~~~ 243 (247)
..++..+..+..-..++++++.+.+..|.-++|++..+.|
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~A~~~g~~~G~i 368 (423)
T PRK09357 329 TALSLLYTTLVKTGLLDLEQLLEKMTINPARILGLPAGPL 368 (423)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCCCCcc
Confidence 3455555544445679999999999999999999865444
No 107
>PRK09236 dihydroorotase; Reviewed
Probab=76.02 E-value=75 Score=30.39 Aligned_cols=148 Identities=12% Similarity=0.099 Sum_probs=83.7
Q ss_pred CHHHHHHHHHHHHHHHHHcCCceEEeecccHHHHHHHHHhcCCCCCc----EEEEeCCCCHHHHHHHHHCCCeeeecccc
Q 025866 49 DFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDG----VIIHSYLGSAEMVPELSKLGAYFSFSGFL 124 (247)
Q Consensus 49 ~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~~~l~iLk~~~~~~~~----~I~H~fsGs~~~~~~~l~~G~~~Si~~~i 124 (247)
+.........+.+++|++++.|+.+|.....+.+ +++++......+ +..|+..-+.+.+. ..|.++.+++.+
T Consensus 210 p~~ae~~av~~~~~la~~~~~~~hi~h~st~~~~-~~i~~~~~~g~~vt~e~~~H~l~l~~~~~~---~~~~~~~~~Ppl 285 (444)
T PRK09236 210 SAEACYKSSSLAVSLAKKHGTRLHVLHISTAKEL-SLFENGPLAEKRITAEVCVHHLWFDDSDYA---RLGNLIKCNPAI 285 (444)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCEEEEeCCCHHHH-HHHHHHHHCCCCEEEEEchhhhhcCHHHHh---ccCceEEECCCC
Confidence 4455666678999999999999999777754443 333332111112 23477766665543 358888888864
Q ss_pred ccccccC-----C-CCCceEEecCC-CCCCCchhhccccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCCC
Q 025866 125 MSMKAQK-----V-PSERILLETDA-PDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPK 197 (247)
Q Consensus 125 ~~~~~~~-----i-PldriLlETD~-P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 197 (247)
....... + ---...+=||. |++ ....+. .|.. .+.
T Consensus 286 r~~~~~~~l~~~l~~G~i~~igtDh~p~~-~~~k~~--~~~~-----------------------------------~~~ 327 (444)
T PRK09236 286 KTASDREALRQALADDRIDVIATDHAPHT-WEEKQG--PYFQ-----------------------------------APS 327 (444)
T ss_pred CCHHHHHHHHHHHhCCCCcEEECCCCCCC-HHHhcC--Cccc-----------------------------------CCC
Confidence 3221111 1 11246889996 442 110000 0000 000
Q ss_pred cccCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCC
Q 025866 198 ETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 239 (247)
Q Consensus 198 ~~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~ 239 (247)
+...--..++.+++.+ .-.+++++++.+.+..|.-++|++.
T Consensus 328 G~~~~e~~l~~l~~~v-~~~~~~~~~~~~~~t~~pA~~lgl~ 368 (444)
T PRK09236 328 GLPLVQHALPALLELV-HEGKLSLEKVVEKTSHAPAILFDIK 368 (444)
T ss_pred CcccHHHHHHHHHHHH-HhcCCCHHHHHHHHHHhHHHhcCCC
Confidence 0111122355556544 3457999999999999999999994
No 108
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=74.97 E-value=28 Score=30.58 Aligned_cols=62 Identities=10% Similarity=0.046 Sum_probs=39.1
Q ss_pred CCChhHHHHHHHHhhcCCc--eEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCc-eEEee
Q 025866 13 ERTPNWFSTLKEFFEITPA--AAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRP-ASIHC 75 (247)
Q Consensus 13 ~~~~~~l~~l~~~l~~~~~--~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lp-v~lH~ 75 (247)
..+...++.+.+++++..+ .+.|-..++.... ....++...+.+++.+++|+++|.+ |++|.
T Consensus 41 ~~~~~~~~~l~~~~~~~gl~ls~h~p~~~nl~s~-d~~~r~~~~~~l~~~i~~A~~lGa~~vv~h~ 105 (273)
T smart00518 41 RLSEETAEKFKEALKENNIDVSVHAPYLINLASP-DKEKVEKSIERLIDEIKRCEELGIKALVFHP 105 (273)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCceecCCCC-CHHHHHHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 4567788999999887554 2223211221111 0112455678899999999999987 56786
No 109
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=74.40 E-value=66 Score=30.05 Aligned_cols=148 Identities=19% Similarity=0.224 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCceEE-eecccHHHHHHHHHhcCC-CCCcEEEEeCCCCHHHHHHHHHCCCeeeecccccc
Q 025866 49 DFMDQVGVFRQQLELAKELKRPASI-HCVRAFGDLLEIMKSVGP-FPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMS 126 (247)
Q Consensus 49 ~~~~Q~~vf~~qL~lA~~~~lpv~l-H~~~a~~~~l~iLk~~~~-~~~~~I~H~fsGs~~~~~~~l~~G~~~Si~~~i~~ 126 (247)
|...+.....+.+.||+..+.++.| |.-- .+-++++++.+. ...-+..|+..-+.+.+. +.|.++=+++.+..
T Consensus 152 P~~aE~~av~r~~~la~~~~~~~hi~Hvs~--~~~~~~i~~~k~~vt~ev~ph~L~l~~~~~~---~~~~~~k~~PPlr~ 226 (361)
T cd01318 152 DAEAAAVATARALKLARRHGARLHICHVST--PEELKLIKKAKPGVTVEVTPHHLFLDVEDYD---RLGTLGKVNPPLRS 226 (361)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCEEEEeCCC--HHHHHHHHHhCCCeEEEeCHHHhhcCHHHHh---cCCCeEEEeCCCCC
Confidence 5567777888999999999988754 4332 336677776531 011233465444444432 35666666664433
Q ss_pred ccccC-----C-CCCceEEecC-CCCCCCchhhccccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCCCcc
Q 025866 127 MKAQK-----V-PSERILLETD-APDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKET 199 (247)
Q Consensus 127 ~~~~~-----i-PldriLlETD-~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 199 (247)
...++ + --....+=|| +|+....+.. . +| ..+ .| .
T Consensus 227 ~~d~~aL~~~l~~G~id~i~SDh~P~~~~~k~~-~-~~--~a~-------------------------~G---------~ 268 (361)
T cd01318 227 REDRKALLQALADGRIDVIASDHAPHTLEEKRK-G-YP--AAP-------------------------SG---------I 268 (361)
T ss_pred HHHHHHHHHHHhCCCCCEEeeCCCCCCHHHccC-C-hh--hCC-------------------------CC---------C
Confidence 21111 1 1223478899 7875321110 0 00 000 01 2
Q ss_pred cCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCCC
Q 025866 200 LNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 240 (247)
Q Consensus 200 ~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~~ 240 (247)
......++.++..+ ...+++++++.+.+..|.-++|++.+
T Consensus 269 ~g~e~~l~~~~~~v-~~~~l~l~~a~~~~t~nPA~~lgl~~ 308 (361)
T cd01318 269 PGVETALPLMLTLV-NKGILSLSRVVRLTSHNPARIFGIKN 308 (361)
T ss_pred ccHHHHHHHHHHHH-HcCCCCHHHHHHHHhHHHHHHhCCCC
Confidence 22223455555433 45679999999999999999999863
No 110
>PLN02599 dihydroorotase
Probab=74.26 E-value=42 Score=31.76 Aligned_cols=38 Identities=8% Similarity=0.138 Sum_probs=27.8
Q ss_pred cCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCC
Q 025866 200 LNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 239 (247)
Q Consensus 200 ~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~ 239 (247)
-+-|..++.....+.+ .| +.+.+.+.+..|.-++||++
T Consensus 286 ~~~~~~l~~l~~~~~~-~g-~l~~l~~~~S~npA~~~gL~ 323 (364)
T PLN02599 286 YSAPVALSLYAKAFEE-AG-ALDKLEAFTSFNGPDFYGLP 323 (364)
T ss_pred ccHHHHHHHHHHHHHh-cC-CHHHHHHHHhHHHHHHhCCC
Confidence 3344456654444433 35 99999999999999999996
No 111
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type. This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.
Probab=74.13 E-value=51 Score=30.69 Aligned_cols=39 Identities=10% Similarity=0.180 Sum_probs=29.8
Q ss_pred ccCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCC
Q 025866 199 TLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 239 (247)
Q Consensus 199 ~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~ 239 (247)
-..-+..++-++..+ +- +++++.+.+.+..|.-++||++
T Consensus 263 ~~g~e~~l~~~~~~~-~~-~~~l~~~v~~~s~nPAk~~gl~ 301 (341)
T TIGR00856 263 CFSAPTALPSYAEVF-EE-MNALENLEAFCSDNGPQFYGLP 301 (341)
T ss_pred cccHHHHHHHHHHHH-hc-CCCHHHHHHHHhHhHHHHhCCC
Confidence 444555667666443 33 6899999999999999999994
No 112
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=73.21 E-value=37 Score=31.78 Aligned_cols=63 Identities=11% Similarity=0.202 Sum_probs=40.2
Q ss_pred HHHHHHHcCCceEEeeccc----HHHHHHHHHhcCCCC-CcEEEEeCCC--------CHHHHHHHHH-CCCeeeecc
Q 025866 60 QLELAKELKRPASIHCVRA----FGDLLEIMKSVGPFP-DGVIIHSYLG--------SAEMVPELSK-LGAYFSFSG 122 (247)
Q Consensus 60 qL~lA~~~~lpv~lH~~~a----~~~~l~iLk~~~~~~-~~~I~H~fsG--------s~~~~~~~l~-~G~~~Si~~ 122 (247)
.|+.+.+.++||+|=+=-+ ....++.+++.|... .-+++||.++ +...+..+.+ .++-++++.
T Consensus 125 LL~~~A~~gkPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~~pVG~Sd 201 (329)
T TIGR03569 125 LLKKIARFGKPVILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFDLPVGYSD 201 (329)
T ss_pred HHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhCCCEEECC
Confidence 3555678899999876654 334567777776432 2357799987 4555555554 466666653
No 113
>TIGR01792 urease_alph urease, alpha subunit. This model describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Accessory proteins for incorporation of the nickel cofactor are usually found in addition to the urease alpha, beta, and gamma subunits. The trusted cutoff is set above the scores of many reported fragments and of a putative second urease alpha chain in Streptomyces coelicolor.
Probab=72.41 E-value=8.7 Score=38.62 Aligned_cols=61 Identities=16% Similarity=0.227 Sum_probs=40.7
Q ss_pred HHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecccHHH---HHHHHHhcCC
Q 025866 19 FSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGD---LLEIMKSVGP 91 (247)
Q Consensus 19 l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~~---~l~iLk~~~~ 91 (247)
.+.|.+++.. .+.+++ +..||. .-.+++.+.+++|.++|.||.+|+ +...+ +-+.++.++.
T Consensus 202 ~~~L~e~i~a-Ga~gfK-~h~~y~---------~s~e~L~~al~~A~e~gv~V~iH~-ET~~E~g~ve~t~~a~g~ 265 (567)
T TIGR01792 202 PAALIEQIEA-GACGLK-VHEDWG---------ATPAAIDNALSVADEYDVQVAVHT-DTLNESGFVEDTIAAFKG 265 (567)
T ss_pred HHHHHHHHHc-CCcEEE-eCCCCC---------CCHHHHHHHHHHHHHcCCEEEEeC-CCcccchHHHHHHHHHCC
Confidence 4556666543 355555 444442 123688999999999999999999 65555 5556677764
No 114
>COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism]
Probab=72.18 E-value=66 Score=30.19 Aligned_cols=143 Identities=12% Similarity=0.160 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHcCCceEEeeccc---------HHHHHH-HHHhcC--CCCCcEEE-EeCCCCHHHHHHHHHCC--Cee
Q 025866 54 VGVFRQQLELAKELKRPASIHCVRA---------FGDLLE-IMKSVG--PFPDGVII-HSYLGSAEMVPELSKLG--AYF 118 (247)
Q Consensus 54 ~~vf~~qL~lA~~~~lpv~lH~~~a---------~~~~l~-iLk~~~--~~~~~~I~-H~fsGs~~~~~~~l~~G--~~~ 118 (247)
.+-+-.-|+-.++.|+|+.||-.-. ...+++ +|+... .+..++|+ |+-+. +-++-..+.+ .+.
T Consensus 117 ~~~~~pvle~Mq~~gmpLlvHGEvt~~~vDifdrE~~Fi~~vl~pl~~~fP~LKIV~EHiTT~--dav~~v~~~~~nlaA 194 (344)
T COG0418 117 IEKIYPVLEAMQKIGMPLLVHGEVTDAEVDIFDREAAFIESVLEPLRQRFPKLKIVLEHITTK--DAVEYVKDANNNLAA 194 (344)
T ss_pred HHHHHHHHHHHHHcCCeEEEecccCCccccchhhHHHHHHHHHHHHHhhCCcceEEEEEeccH--HHHHHHHhcCcceee
Confidence 4556666777889999999998742 222333 443321 22356777 88643 3444444444 666
Q ss_pred eecccc-ccccc-----------------cC------------CCCCceEEecCCCCCCCchhhccccccCCCCCCcccc
Q 025866 119 SFSGFL-MSMKA-----------------QK------------VPSERILLETDAPDALPKAELNSLFLVDGDPSLPQEL 168 (247)
Q Consensus 119 Si~~~i-~~~~~-----------------~~------------iPldriLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~ 168 (247)
+|+..- ...+. ++ -.-.++++-||| .|.+..
T Consensus 195 TIT~hHL~~nrnd~l~Ggi~Ph~fClPilKr~~hr~AL~~aa~sg~~kfFlGtDS---APH~~~---------------- 255 (344)
T COG0418 195 TITPHHLLLNRNDMLVGGIRPHLFCLPILKRETHREALREAATSGHPKFFLGTDS---APHARS---------------- 255 (344)
T ss_pred EeehhheeeehhhhhcCCCCcceeeeccccchhhHHHHHHHHhcCCCcEEecCCC---CCCccc----------------
Confidence 665421 11110 00 234589999998 443321
Q ss_pred cccccCCCCCCCCCCcccccCCCCCCCCCcccCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCC
Q 025866 169 SAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 239 (247)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~ 239 (247)
.|-+.-.|.+.-+-|..++..++.. +-.| .++-+..-.-.|..++|+++
T Consensus 256 --------------------~Ke~~cgcAG~fsap~al~~~AevF-E~~n-aL~~LeaF~S~nGp~fY~lp 304 (344)
T COG0418 256 --------------------RKESACGCAGIFSAPFALPLYAEVF-EEEN-ALDNLEAFASDNGPKFYGLP 304 (344)
T ss_pred --------------------ccccccccccccccHhHHHHHHHHH-HHhc-HHHHHHHHHhhcCcceeccc
Confidence 0001112334556666666665544 2222 67888888999999999996
No 115
>PRK09230 cytosine deaminase; Provisional
Probab=71.97 E-value=37 Score=32.43 Aligned_cols=43 Identities=16% Similarity=0.134 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCC---ceEEeeccc-------HHHHHHHHHhcCCCCCcEEEEeCCCC
Q 025866 58 RQQLELAKELKR---PASIHCVRA-------FGDLLEIMKSVGPFPDGVIIHSYLGS 104 (247)
Q Consensus 58 ~~qL~lA~~~~l---pv~lH~~~a-------~~~~l~iLk~~~~~~~~~I~H~fsGs 104 (247)
...+++..++++ -+..||... .++.+++|++.+. .|+||-+.+
T Consensus 227 ~~~~~~~~~~gl~~~v~~~H~~~l~~~~~~~~~~~~~~La~~gv----~vv~cP~sn 279 (426)
T PRK09230 227 ETVAALAHREGMGARVTASHTTAMHSYNGAYTSRLFRLLKMSGI----NFVANPLVN 279 (426)
T ss_pred HHHHHHHHHhCCCCCEEEEecCchhcCCHHHHHHHHHHHHHcCC----eEEECcchh
Confidence 345666666664 567899987 4678999999863 578986544
No 116
>PRK07575 dihydroorotase; Provisional
Probab=71.55 E-value=52 Score=31.52 Aligned_cols=148 Identities=15% Similarity=0.102 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCceEE-eecccHHHHHHHHHhcCCC--CCcEEEEeCCCCHHHHHHHHHCCCeeeeccccc
Q 025866 49 DFMDQVGVFRQQLELAKELKRPASI-HCVRAFGDLLEIMKSVGPF--PDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLM 125 (247)
Q Consensus 49 ~~~~Q~~vf~~qL~lA~~~~lpv~l-H~~~a~~~~l~iLk~~~~~--~~~~I~H~fsGs~~~~~~~l~~G~~~Si~~~i~ 125 (247)
+...+...+.+.+++|++++.++.| |+- ..+-++++++.... ...+..|+-.-+.+.+. +.|.++=++|.+.
T Consensus 206 p~~aE~~av~~~~~la~~~g~~lhi~HiS--t~~~v~~i~~~k~~~vt~ev~phhL~l~~~~~~---~~~~~~k~~PPLR 280 (438)
T PRK07575 206 DEEAALLATRLALKLSKKYQRRLHILHLS--TAIEAELLRQDKPSWVTAEVTPQHLLLNTDAYE---RIGTLAQMNPPLR 280 (438)
T ss_pred cHHHHHHHHHHHHHHHHHHCCCEEEEECC--CHHHHHHHHHhcCCCEEEEEchhhheeCHHHHh---CCCceEEEeCCCC
Confidence 4456678889999999999999988 877 45555566554321 11244555544554432 3577777777643
Q ss_pred cccccC-----C-CCCceEEecCCCCCCCchhhccccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCCCcc
Q 025866 126 SMKAQK-----V-PSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKET 199 (247)
Q Consensus 126 ~~~~~~-----i-PldriLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 199 (247)
....+. + .-.--.|-||.--....... .+ +. ..+.+-
T Consensus 281 ~~~d~~~L~~~l~~G~id~i~sDh~p~~~~~k~-------------~~-----------------------~~-~~~~G~ 323 (438)
T PRK07575 281 SPEDNEALWQALRDGVIDFIATDHAPHTLEEKA-------------QP-----------------------YP-NSPSGM 323 (438)
T ss_pred CHHHHHHHHHHHhCCCCCEEecCCCCCCHHHcc-------------CC-----------------------cc-cCCCCc
Confidence 322111 1 11224577886322110000 00 00 000011
Q ss_pred cCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCC
Q 025866 200 LNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 239 (247)
Q Consensus 200 ~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~ 239 (247)
...-..++..++.+ .-.+++.+++.+.+..|.-++|+++
T Consensus 324 ~g~e~~l~~l~~~~-~~~~lsl~~~~~~~s~npAk~lgl~ 362 (438)
T PRK07575 324 PGVETSLPLMLTAA-MRGKCTVAQVVRWMSTAVARAYGIP 362 (438)
T ss_pred ccHHHHHHHHHHHH-hcCCCCHHHHHHHHhhhHHHHcCCC
Confidence 22334567777665 3457999999999999999999994
No 117
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=71.34 E-value=19 Score=31.08 Aligned_cols=57 Identities=23% Similarity=0.395 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHcCCceEEeecc------cHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHC
Q 025866 56 VFRQQLELAKELKRPASIHCVR------AFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKL 114 (247)
Q Consensus 56 vf~~qL~lA~~~~lpv~lH~~~------a~~~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~ 114 (247)
-|+..|+++.+++..++|.... ....+++++++++....++++++|+ .+.++.+.+.
T Consensus 88 tL~evl~~~~~~~~~l~ieiK~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sf~--~~~l~~~~~~ 150 (233)
T cd08582 88 TLEEYLAIVPKYGKKLFIEIKHPRRGPEAEEELLKLLKESGLLPEQIVIISFD--AEALKRVREL 150 (233)
T ss_pred CHHHHHHHHHhcCceEEEEeCCCccCccHHHHHHHHHHHcCCCCCCEEEEecC--HHHHHHHHHH
Confidence 4888888998889999999884 2456788889885444678999994 6677777664
No 118
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=69.88 E-value=15 Score=33.80 Aligned_cols=58 Identities=17% Similarity=0.268 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHcCCceEEeecccHHHHHHHHHhcCCCCCcE-EEEeCCC-CHHHHHHHHHCCCeee
Q 025866 55 GVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGV-IIHSYLG-SAEMVPELSKLGAYFS 119 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a~~~~l~iLk~~~~~~~~~-I~H~fsG-s~~~~~~~l~~G~~~S 119 (247)
..+.+.++.+.++++||++|+. +.+.+.+..+. ++ |.|.-+. +.+.++++.+.|..++
T Consensus 115 ~~l~~~~~~~~~~g~~v~~H~E----r~~~la~~~g~---~l~i~Hiss~~~le~i~~ak~~g~~vt 174 (337)
T cd01302 115 GTLMRTFLEIASRGGPVMVHAE----RAAQLAEEAGA---NVHIAHVSSGEALELIKFAKNKGVKVT 174 (337)
T ss_pred HHHHHHHHHHHhcCCeEEEeHH----HHHHHHHHhCC---cEEEEeCCCHHHHHHHHHHHHCCCcEE
Confidence 4456666777788999999999 67777777653 34 5576543 4466666677786554
No 119
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=67.40 E-value=49 Score=27.25 Aligned_cols=72 Identities=18% Similarity=0.199 Sum_probs=48.2
Q ss_pred hHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeeccc-HHHHHHHHHhcCC
Q 025866 17 NWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRA-FGDLLEIMKSVGP 91 (247)
Q Consensus 17 ~~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a-~~~~l~iLk~~~~ 91 (247)
..++.+.+++.+..+..| =|||+..-.+...+...+.+-|-+ .|.+.+++||.+|..+- +....++|.+.+.
T Consensus 40 ~~~~~l~~li~~~~~~~v-VVGlP~~m~g~~~~~~~~~~~f~~--~L~~r~~lpv~l~DERltTv~A~~~L~~~~~ 112 (141)
T COG0816 40 QDFNALLKLVKEYQVDTV-VVGLPLNMDGTEGPRAELARKFAE--RLKKRFNLPVVLWDERLSTVEAERMLIEAGV 112 (141)
T ss_pred hhHHHHHHHHHHhCCCEE-EEecCcCCCCCcchhHHHHHHHHH--HHHHhcCCCEEEEcCccCHHHHHHHHHHcCC
Confidence 478899999988766555 389998654433333333444444 45678999999999884 5556667777543
No 120
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=67.28 E-value=18 Score=32.41 Aligned_cols=103 Identities=16% Similarity=0.184 Sum_probs=52.3
Q ss_pred CChhHHHHHHHHhhcCCceEEE------------eecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecccH--
Q 025866 14 RTPNWFSTLKEFFEITPAAAVG------------EIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAF-- 79 (247)
Q Consensus 14 ~~~~~l~~l~~~l~~~~~~aIG------------EIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~-- 79 (247)
.+.+++..|.+++.+..+..+- +.|.+++... +.+. .....|+.+.+.|+||+|=+=.+.
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIa---S~dl---~n~~lL~~~A~tgkPvIlSTG~stl~ 126 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIA---SGDL---TNLPLLEYIAKTGKPVILSTGMSTLE 126 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE----GGGT---T-HHHHHHHHTT-S-EEEE-TT--HH
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEec---cccc---cCHHHHHHHHHhCCcEEEECCCCCHH
Confidence 4677888888888764432221 1222222110 0111 123456777889999999887653
Q ss_pred --HHHHHHHHhcCCCCCcEEEEeCCC--------CHHHHHHHH-HCCCeeeeccc
Q 025866 80 --GDLLEIMKSVGPFPDGVIIHSYLG--------SAEMVPELS-KLGAYFSFSGF 123 (247)
Q Consensus 80 --~~~l~iLk~~~~~~~~~I~H~fsG--------s~~~~~~~l-~~G~~~Si~~~ 123 (247)
++.++++++.+.. .-+++||.++ +...+..+. .+|+-+|++.-
T Consensus 127 EI~~Av~~~~~~~~~-~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~~~vG~SDH 180 (241)
T PF03102_consen 127 EIERAVEVLREAGNE-DLVLLHCVSSYPTPPEDVNLRVIPTLKERFGVPVGYSDH 180 (241)
T ss_dssp HHHHHHHHHHHHCT---EEEEEE-SSSS--GGG--TTHHHHHHHHSTSEEEEEE-
T ss_pred HHHHHHHHHHhcCCC-CEEEEecCCCCCCChHHcChHHHHHHHHhcCCCEEeCCC
Confidence 4567777665543 3467799987 223334444 35888888753
No 121
>TIGR03586 PseI pseudaminic acid synthase.
Probab=65.91 E-value=62 Score=30.27 Aligned_cols=62 Identities=15% Similarity=0.241 Sum_probs=38.9
Q ss_pred HHHHHHHcCCceEEeeccc----HHHHHHHHHhcCCCCCcEEEEeCCC--------CHHHHHHHHH-CCCeeeecc
Q 025866 60 QLELAKELKRPASIHCVRA----FGDLLEIMKSVGPFPDGVIIHSYLG--------SAEMVPELSK-LGAYFSFSG 122 (247)
Q Consensus 60 qL~lA~~~~lpv~lH~~~a----~~~~l~iLk~~~~~~~~~I~H~fsG--------s~~~~~~~l~-~G~~~Si~~ 122 (247)
.|+-..+.++||+|=+=-+ ....++.+++.|.. .-+++||.++ +...+..+.+ .++-+|++.
T Consensus 126 LL~~va~~gkPvilstG~~t~~Ei~~Av~~i~~~g~~-~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~~pVG~SD 200 (327)
T TIGR03586 126 LIRYVAKTGKPIIMSTGIATLEEIQEAVEACREAGCK-DLVLLKCTSSYPAPLEDANLRTIPDLAERFNVPVGLSD 200 (327)
T ss_pred HHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHCCCC-cEEEEecCCCCCCCcccCCHHHHHHHHHHhCCCEEeeC
Confidence 3555667899999876654 23456677776642 2367799887 4444444443 466676654
No 122
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=64.62 E-value=38 Score=28.86 Aligned_cols=57 Identities=18% Similarity=0.252 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcCCceEEeeccc-------HHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHC
Q 025866 56 VFRQQLELAKELKRPASIHCVRA-------FGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKL 114 (247)
Q Consensus 56 vf~~qL~lA~~~~lpv~lH~~~a-------~~~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~ 114 (247)
-|++.|+++++.+..++|..... ...+++++++++....++++.+| +.+.++.+.+.
T Consensus 88 tl~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~~~~~~~~v~~~Sf--~~~~l~~~~~~ 151 (229)
T cd08562 88 TLADVLELARELGLGLNLEIKPDPGDEALTARVVAAALRELWPHASKLLLSSF--SLEALRAARRA 151 (229)
T ss_pred CHHHHHHHHHhcCCEEEEEECCCCCccHHHHHHHHHHHHHhcCCcCCEEEECC--CHHHHHHHHHh
Confidence 47888888888888899887753 23567888888754367899999 67788877764
No 123
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=64.39 E-value=25 Score=33.49 Aligned_cols=59 Identities=15% Similarity=0.298 Sum_probs=42.4
Q ss_pred HHHHHHcC----CceEEeecccHHHHHHHHHhcCCCCCcEEEEeCCCC------HHHHHHHHHCCCeeeeccc
Q 025866 61 LELAKELK----RPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGS------AEMVPELSKLGAYFSFSGF 123 (247)
Q Consensus 61 L~lA~~~~----lpv~lH~~~a~~~~l~iLk~~~~~~~~~I~H~fsGs------~~~~~~~l~~G~~~Si~~~ 123 (247)
++...++| ..+..||....++-+++|++.+. .|.||-..+ ..-+.++++.|+.++++-.
T Consensus 244 v~~l~~~Gll~~~~~~~H~~~~~~~d~~~la~~g~----~v~~~P~sn~~l~~g~~p~~~~~~~Gv~v~lGtD 312 (442)
T PRK07203 244 VERLADFGLLGEKTLAAHCIYLSDEEIDLLKETDT----FVVHNPESNMGNAVGYNPVLEMIKNGILLGLGTD 312 (442)
T ss_pred HHHHHhCCCCCCCcEEEEeecCCHHHHHHHHhcCC----eEEECchhhhhcccCCCCHHHHHHCCCeEEEcCC
Confidence 34444544 35679999999999999999863 577986433 3345788889988888743
No 124
>PRK09228 guanine deaminase; Provisional
Probab=63.26 E-value=78 Score=30.24 Aligned_cols=88 Identities=14% Similarity=0.063 Sum_probs=50.5
Q ss_pred eeeecccccCCCChhHHHHHHHHhhcC-CceEEEeecCCCCCCCCCCCHHHHHHHHHH------HHHHHHHcC----Cce
Q 025866 3 WVCFIFRFVQERTPNWFSTLKEFFEIT-PAAAVGEIGLDKGSKGREIDFMDQVGVFRQ------QLELAKELK----RPA 71 (247)
Q Consensus 3 ~~g~hP~~~~~~~~~~l~~l~~~l~~~-~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~------qL~lA~~~~----lpv 71 (247)
.+++-|+.....+++.+..+.++.++. .+ +++.+-. +...+ ...+.+. .++...++| ..+
T Consensus 197 ~~~~~p~~~~t~s~~~l~~~~~lA~~~~~~------~i~~Hl~--E~~~e-~~~~~~~~g~~~~~~~~l~~~G~l~~~~~ 267 (433)
T PRK09228 197 LYAITPRFAPTSTPEQLEAAGALAREHPDV------WIQTHLS--ENLDE-IAWVKELFPEARDYLDVYERYGLLGPRAV 267 (433)
T ss_pred eEEEECCcCCcCCHHHHHHHHHHHHHCCCC------ceEEeec--CChhH-HHHHHHHcCCCCCHHHHHHHcCCCCCCeE
Confidence 345556666555666777777776653 21 2222210 11111 1222221 255555655 346
Q ss_pred EEeecccHHHHHHHHHhcCCCCCcEEEEeCCC
Q 025866 72 SIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLG 103 (247)
Q Consensus 72 ~lH~~~a~~~~l~iLk~~~~~~~~~I~H~fsG 103 (247)
..|+....++-+++|++.+. .+.||-+.
T Consensus 268 ~~H~~~l~~~~~~~la~~g~----~v~~~P~s 295 (433)
T PRK09228 268 FAHCIHLEDRERRRLAETGA----AIAFCPTS 295 (433)
T ss_pred EEeccCCCHHHHHHHHHcCC----eEEECCcc
Confidence 68999999999999999863 56788654
No 125
>PRK09060 dihydroorotase; Validated
Probab=62.67 E-value=69 Score=30.75 Aligned_cols=146 Identities=17% Similarity=0.186 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCCceEEeecccHHHHHHHHHhcCCC-CCcEEEEeCCCCHHHHHHHHHCCCeeeeccccccc
Q 025866 49 DFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPF-PDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSM 127 (247)
Q Consensus 49 ~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~~~l~iLk~~~~~-~~~~I~H~fsGs~~~~~~~l~~G~~~Si~~~i~~~ 127 (247)
|...+.....+.+++|++.+.||.+|-....+. +++++..+.. ..-+..|+..-+.+. .+.+.|.+.-+++.+...
T Consensus 208 p~~aE~~av~~~~~la~~~~~~lhi~h~st~~~-v~~i~~~~~~vt~ev~ph~l~l~~~~--~~~~~~~~~k~~PPlr~~ 284 (444)
T PRK09060 208 DEEAALLATRRLVRLARETGRRIHVLHVSTAEE-IDFLADHKDVATVEVTPHHLTLAAPE--CYERLGTLAQMNPPIRDA 284 (444)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCEEEEeCCCHHH-HHHHHHhCCCeEEEeChHHhccCchh--hcccCCceEEEeCCCCCH
Confidence 445667788899999999999996666655443 4444443321 111123443322221 022356677777655332
Q ss_pred cccC---------CCCCceEEecCC-CCCCCchhhccccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCCC
Q 025866 128 KAQK---------VPSERILLETDA-PDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPK 197 (247)
Q Consensus 128 ~~~~---------iPldriLlETD~-P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 197 (247)
+.++ +. | + +-||. |+..... ...|.. ..+ |
T Consensus 285 ~~~~~l~~al~~G~i-d-~-i~sDh~p~~~~~k---~~~~~~------------------~~~--------G-------- 324 (444)
T PRK09060 285 RHRDGLWRGVRQGVV-D-V-LGSDHAPHTLEEK---AKPYPA------------------SPS--------G-------- 324 (444)
T ss_pred HHHHHHHHHHhCCCc-c-E-EecCCCCCCHHHh---cCCccc------------------CCC--------C--------
Confidence 2111 21 3 3 66774 3211000 000000 000 1
Q ss_pred cccCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCC
Q 025866 198 ETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 239 (247)
Q Consensus 198 ~~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~ 239 (247)
-..--..++..+..+ ....++++.+.+.+..|.-++|+++
T Consensus 325 -~~g~e~~~~l~~~~v-~~g~l~~~~~~~~~s~~pa~~~gl~ 364 (444)
T PRK09060 325 -MTGVQTLVPIMLDHV-NAGRLSLERFVDLTSAGPARIFGIA 364 (444)
T ss_pred -cccHHHHHHHHHHHH-HcCCCCHHHHHHHHhHhHHHHhCCC
Confidence 111123455555443 3345999999999999999999993
No 126
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=62.64 E-value=52 Score=31.38 Aligned_cols=23 Identities=9% Similarity=0.020 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHcCCceEEeecc
Q 025866 55 GVFRQQLELAKELKRPASIHCVR 77 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~ 77 (247)
..+.+.++.|+++|+++.+|+..
T Consensus 161 ~~l~~~~~~a~~~g~~v~~H~E~ 183 (443)
T TIGR03178 161 WQLYKGMRELARLGQLLLVHAEN 183 (443)
T ss_pred HHHHHHHHHHHhcCCeEEEeccC
Confidence 56778889999999999999875
No 127
>PRK08392 hypothetical protein; Provisional
Probab=62.28 E-value=79 Score=27.15 Aligned_cols=90 Identities=16% Similarity=0.154 Sum_probs=48.0
Q ss_pred eeecccccCCCChhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecccHHHHH
Q 025866 4 VCFIFRFVQERTPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLL 83 (247)
Q Consensus 4 ~g~hP~~~~~~~~~~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~~~l 83 (247)
.++|-|+.........+.+.+.++.+.+..+|=.++.+.... .+ ..+.+++.++.|++.|+++=|-++..
T Consensus 91 ~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~--~~---~~~~~~~i~~~~~~~g~~lEiNt~~~----- 160 (215)
T PRK08392 91 ASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIG--YP---SEEELKEILDLAEAYGKAFEISSRYR----- 160 (215)
T ss_pred EEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCC--Cc---hHHHHHHHHHHHHHhCCEEEEeCCCC-----
Confidence 356654322222344556666665555666666554432110 11 23445667777777777776665210
Q ss_pred HHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCCeeeec
Q 025866 84 EIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFS 121 (247)
Q Consensus 84 ~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~G~~~Si~ 121 (247)
+ -+.+.++.+.++|..|++|
T Consensus 161 -----------------~-p~~~~l~~~~~~G~~~~ig 180 (215)
T PRK08392 161 -----------------V-PDLEFIRECIKRGIKLTFA 180 (215)
T ss_pred -----------------C-CCHHHHHHHHHcCCEEEEe
Confidence 1 1346677777777766665
No 128
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=60.97 E-value=46 Score=30.98 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHcCCceEEeecc
Q 025866 55 GVFRQQLELAKELKRPASIHCVR 77 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~ 77 (247)
..+.+.++.++++|.+|++|+.+
T Consensus 120 ~~l~~~~~~~~~~g~~v~~H~E~ 142 (374)
T cd01317 120 ELLRRALEYAAMLDLPIIVHPED 142 (374)
T ss_pred HHHHHHHHHHHhcCCeEEEecCC
Confidence 34667788899999999999974
No 129
>PRK07213 chlorohydrolase; Provisional
Probab=59.93 E-value=77 Score=29.55 Aligned_cols=59 Identities=15% Similarity=0.118 Sum_probs=44.7
Q ss_pred HHHHHHcCCc--eEEeecccHHHHHHHHHhcCCCCCcEEEEeCCCC------HHHHHHHHHCCCeeeeccc
Q 025866 61 LELAKELKRP--ASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGS------AEMVPELSKLGAYFSFSGF 123 (247)
Q Consensus 61 L~lA~~~~lp--v~lH~~~a~~~~l~iLk~~~~~~~~~I~H~fsGs------~~~~~~~l~~G~~~Si~~~ 123 (247)
++.+.++|+- ++.|+....++-++++++.+. .++||-+.+ ..-++++++.|+-++++..
T Consensus 218 v~~~~~~G~~~~~i~H~~~~~~~~i~~la~~g~----~v~~~P~sn~~l~~g~~~v~~l~~~Gv~v~lGTD 284 (375)
T PRK07213 218 IERLINLGFKPDFIVHATHPSNDDLELLKENNI----PVVVCPRANASFNVGLPPLNEMLEKGILLGIGTD 284 (375)
T ss_pred HHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCC----cEEECCcchhhhccCCccHHHHHHCCCEEEEeeC
Confidence 5667777766 889999999988999999863 356764332 2346889999999999854
No 130
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=55.84 E-value=1.4e+02 Score=26.05 Aligned_cols=97 Identities=14% Similarity=0.187 Sum_probs=54.5
Q ss_pred CChhHHHHHHHHhhcCCceEEE----eecCCCCCCC-CCCCHHHHHHHHHHHHHHHHHcCCceE-Eeecc----------
Q 025866 14 RTPNWFSTLKEFFEITPAAAVG----EIGLDKGSKG-REIDFMDQVGVFRQQLELAKELKRPAS-IHCVR---------- 77 (247)
Q Consensus 14 ~~~~~l~~l~~~l~~~~~~aIG----EIGLD~~~~~-~~~~~~~Q~~vf~~qL~lA~~~~lpv~-lH~~~---------- 77 (247)
.....++.+.+++.+..+..++ ..|..+.... ....++...+.+++.+++|+.+|.+.+ +|.-.
T Consensus 44 ~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~ 123 (275)
T PRK09856 44 LKAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVI 123 (275)
T ss_pred cCchHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHH
Confidence 3445688888888876653333 1122222111 111234557899999999999999875 54321
Q ss_pred ------cHHHHHHHHHhcCCCCCcEEEEe-------CCCCHHHHHHHHH
Q 025866 78 ------AFGDLLEIMKSVGPFPDGVIIHS-------YLGSAEMVPELSK 113 (247)
Q Consensus 78 ------a~~~~l~iLk~~~~~~~~~I~H~-------fsGs~~~~~~~l~ 113 (247)
+..++.++.+++|. ++.+|. +-.+.+.+.++++
T Consensus 124 ~~~~~~~l~~l~~~a~~~gv---~l~iE~~~~~~~~~~~t~~~~~~l~~ 169 (275)
T PRK09856 124 WGRLAENLSELCEYAENIGM---DLILEPLTPYESNVVCNANDVLHALA 169 (275)
T ss_pred HHHHHHHHHHHHHHHHHcCC---EEEEecCCCCcccccCCHHHHHHHHH
Confidence 12334455555542 345543 1235667777776
No 131
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=55.79 E-value=68 Score=28.07 Aligned_cols=67 Identities=13% Similarity=0.144 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEeecc--------cHHHHHHHHHhcCCCCCcEEE---EeCCCCHHHHHHHHHCCC
Q 025866 50 FMDQVGVFRQQLELAKELKRPASIHCVR--------AFGDLLEIMKSVGPFPDGVII---HSYLGSAEMVPELSKLGA 116 (247)
Q Consensus 50 ~~~Q~~vf~~qL~lA~~~~lpv~lH~~~--------a~~~~l~iLk~~~~~~~~~I~---H~fsGs~~~~~~~l~~G~ 116 (247)
++.-.+.+++..++|+++|..+.+|... ...+++++++..+....++.+ |.+....+....+..+|-
T Consensus 124 ~~~~~~~l~~l~~~a~~~gv~l~iE~~~~~~~~~~~t~~~~~~l~~~~~~~~v~~~~D~~h~~~~~~~~~~~i~~~~~ 201 (275)
T PRK09856 124 WGRLAENLSELCEYAENIGMDLILEPLTPYESNVVCNANDVLHALALVPSPRLFSMVDICAPYVQAEPVMSYFDKLGD 201 (275)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEecCCCCcccccCCHHHHHHHHHHcCCCcceeEEeecchhcCCCCHHHHHHHhCC
Confidence 4455678999999999999999999742 357889999987643333333 765443344444444443
No 132
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=55.32 E-value=1.5e+02 Score=26.14 Aligned_cols=96 Identities=20% Similarity=0.187 Sum_probs=54.2
Q ss_pred HHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHH-------------HHHHHHHHHHHHcCCceEEeec-c-----c
Q 025866 18 WFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQV-------------GVFRQQLELAKELKRPASIHCV-R-----A 78 (247)
Q Consensus 18 ~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~-------------~vf~~qL~lA~~~~lpv~lH~~-~-----a 78 (247)
+.+.+.. +.+..+-+| |+|++|.... ..-...|. ..|+-.-++.+..+.|+++=+- + +
T Consensus 16 ~~~~~~~-l~~~Gad~i-el~iPfsdPv-~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~G 92 (242)
T cd04724 16 TLEILKA-LVEAGADII-ELGIPFSDPV-ADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQYG 92 (242)
T ss_pred HHHHHHH-HHHCCCCEE-EECCCCCCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHhC
Confidence 3344444 444556667 9999986532 22345564 4455555555556789665333 2 2
Q ss_pred HHHHHHHHHhcCCCCCcEEE---EeCCCCHHHHHHHHHCCCeee
Q 025866 79 FGDLLEIMKSVGPFPDGVII---HSYLGSAEMVPELSKLGAYFS 119 (247)
Q Consensus 79 ~~~~l~iLk~~~~~~~~~I~---H~fsGs~~~~~~~l~~G~~~S 119 (247)
.++.++.+++.|. .++++ |. .-..+.++.+.++|+-.+
T Consensus 93 ~~~fi~~~~~aG~--~giiipDl~~-ee~~~~~~~~~~~g~~~i 133 (242)
T cd04724 93 LERFLRDAKEAGV--DGLIIPDLPP-EEAEEFREAAKEYGLDLI 133 (242)
T ss_pred HHHHHHHHHHCCC--cEEEECCCCH-HHHHHHHHHHHHcCCcEE
Confidence 4778888888875 35677 52 222234455556686544
No 133
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=55.07 E-value=1.1e+02 Score=24.53 Aligned_cols=73 Identities=16% Similarity=0.179 Sum_probs=50.6
Q ss_pred hhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeeccc-HHHHHHHHHhcCC
Q 025866 16 PNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRA-FGDLLEIMKSVGP 91 (247)
Q Consensus 16 ~~~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a-~~~~l~iLk~~~~ 91 (247)
...++.|.+++.+..+..| =|||+....+...+.....+-|..+|+ +.+++||.++..+- +.+.-+.|.+.+.
T Consensus 34 ~~~~~~l~~~i~~~~~~~i-VvGlP~~~dG~~~~~a~~v~~f~~~L~--~~~~~~v~~~DEr~TT~~A~~~l~~~g~ 107 (130)
T TIGR00250 34 EPDWSRIEELLKEWTPDKI-VVGLPLNMDGTEGPLTERAQKFANRLE--GRFGVPVVLWDERLSTVEAESGLFARGG 107 (130)
T ss_pred cHHHHHHHHHHHHcCCCEE-EEeccCCCCcCcCHHHHHHHHHHHHHH--HHhCCCEEEEcCCcCHHHHHHHHHHcCC
Confidence 3568899999988665444 289999876655555566666666654 56799999988874 4555667776553
No 134
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=54.73 E-value=36 Score=29.86 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=27.6
Q ss_pred HHHHcCCceEEeecccHHHHHHHHHhcCCCCCcEEEEeCC
Q 025866 63 LAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYL 102 (247)
Q Consensus 63 lA~~~~lpv~lH~~~a~~~~l~iLk~~~~~~~~~I~H~fs 102 (247)
.+.+++..++.|+....++.+++|++.+. .+.||-+
T Consensus 159 ~~~~~~~~~i~H~~~l~~~~~~~la~~g~----~v~~~P~ 194 (263)
T cd01305 159 RALDLEPDLLVHGTHLTDEDLELVRENGV----PVVLCPR 194 (263)
T ss_pred HHHhCCCCEEEEcCCCCHHHHHHHHHcCC----cEEEChh
Confidence 33344666889999999999999999864 4778853
No 135
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=52.99 E-value=86 Score=27.64 Aligned_cols=83 Identities=13% Similarity=0.080 Sum_probs=53.3
Q ss_pred hHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecccHHHHHHHHHhcCCCCCcE
Q 025866 17 NWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGV 96 (247)
Q Consensus 17 ~~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~~~l~iLk~~~~~~~~~ 96 (247)
...+.+...+....+-.||=.|+.-... .....-.....+.+++|.+.+.-+-|+++..
T Consensus 112 ~~~~~~~~a~~~~~v~il~H~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~aleins~~~------------------ 170 (237)
T COG1387 112 DYTERLIAAMSNGAVDILAHPGGRLLGR---IDRGAYKEDIEELIELAEKNGKALEINSRPG------------------ 170 (237)
T ss_pred HHHHHHHHHHcCCCccEEecCCcccccc---ccccccHHHHHHHHHHHHHhCcEEeecCCcC------------------
Confidence 3355566666667777888777764331 1233445678888999999999999999821
Q ss_pred EEEeCCCCHHHHHHHHHCCCeeeeccc
Q 025866 97 IIHSYLGSAEMVPELSKLGAYFSFSGF 123 (247)
Q Consensus 97 I~H~fsGs~~~~~~~l~~G~~~Si~~~ 123 (247)
....+.+.++.+.+.|++|+||..
T Consensus 171 ---~~~~~~~~~~~~~e~G~~~~i~tD 194 (237)
T COG1387 171 ---RLDPNSEILRLARELGVKLAIGTD 194 (237)
T ss_pred ---ccCchHHHHHHHHHhCCeEEeecC
Confidence 111235566666666777777643
No 136
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type. All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.
Probab=52.97 E-value=57 Score=30.87 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=29.1
Q ss_pred CcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCCC
Q 025866 201 NHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 240 (247)
Q Consensus 201 n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~~ 240 (247)
.....++.+++.+.+ .+++++++.+.+..|.-++|++++
T Consensus 314 g~e~~~~~~~~~~~~-~~~~~~~~~~~~t~~pa~~~g~~~ 352 (411)
T TIGR00857 314 GLETALPLLLQLLVK-GLISLKDLIRMLSINPARIFGLPD 352 (411)
T ss_pred eHHHHHHHHHHHHHh-CCCCHHHHHHHHhHHHHHHhCCCC
Confidence 334446666654433 479999999999999999999864
No 137
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=52.80 E-value=1.2e+02 Score=24.47 Aligned_cols=72 Identities=17% Similarity=0.195 Sum_probs=48.5
Q ss_pred hHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeeccc-HHHHHHHHHhcCC
Q 025866 17 NWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRA-FGDLLEIMKSVGP 91 (247)
Q Consensus 17 ~~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a-~~~~l~iLk~~~~ 91 (247)
..++.|.+++.+.++..| =|||+....+...+.....+-|...|+ +.+++||.+...+- +.+.-++|.+.+.
T Consensus 41 ~~~~~l~~~i~~~~i~~i-VvGlP~~~~G~~~~~~~~v~~f~~~L~--~~~~~~v~~~DEr~TT~~A~~~l~~~~~ 113 (138)
T PRK00109 41 PDWDRLEKLIKEWQPDGL-VVGLPLNMDGTEGPRTERARKFANRLE--GRFGLPVVLVDERLSTVEAERALADVGS 113 (138)
T ss_pred hHHHHHHHHHHHhCCCEE-EEeccCCCCCCcCHHHHHHHHHHHHHH--HHhCCCEEEEcCCcCHHHHHHHHHHcCC
Confidence 357889999888665443 289998866544445555556666554 45699999888874 5556667766543
No 138
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=52.56 E-value=37 Score=20.85 Aligned_cols=32 Identities=25% Similarity=0.325 Sum_probs=27.9
Q ss_pred cchhHHHHHHHHHHccCCCHHHHHHHHHHHHH
Q 025866 202 HPANIHNVLDYVASLLDMTKEELAELSYRNAI 233 (247)
Q Consensus 202 ~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~ 233 (247)
-|..+.+.++.+|+-.|+|..++.+...+++.
T Consensus 6 l~~~~~~~l~~~a~~~g~s~s~~ir~ai~~~l 37 (39)
T PF01402_consen 6 LPDELYERLDELAKELGRSRSELIREAIREYL 37 (39)
T ss_dssp EEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46788999999999999999999988887764
No 139
>PF06187 DUF993: Protein of unknown function (DUF993); InterPro: IPR009334 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 4DNH_A.
Probab=52.49 E-value=1.1e+02 Score=29.22 Aligned_cols=67 Identities=21% Similarity=0.310 Sum_probs=36.1
Q ss_pred ceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeeccc-------HHH---HH-HHHHhcCCCCCcEEEE
Q 025866 31 AAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRA-------FGD---LL-EIMKSVGPFPDGVIIH 99 (247)
Q Consensus 31 ~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a-------~~~---~l-~iLk~~~~~~~~~I~H 99 (247)
-++-| +|-|+-........+.=+..+++|++.-++.|--+||=.-++ -++ +. ++|.+.. ..+|+|
T Consensus 109 ~ia~G-aGTD~L~~~~~~sld~V~~AY~eQ~~~ve~~Gg~~ILMASRaLA~~A~~p~DY~~VY~~lL~q~~---~PVILH 184 (382)
T PF06187_consen 109 RIACG-AGTDQLDPAPAASLDDVIAAYEEQLEAVEAAGGRVILMASRALAAVARSPDDYLRVYDRLLSQAD---EPVILH 184 (382)
T ss_dssp -EEEE-E--TTS---TT--HHHHHHHHHHHHHHHHHTT--EEE---HHHHHH--SHHHHHHHHHHHHHH-S---S-EEEE
T ss_pred cEEee-cCcCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEeehHHHHHhhCCHHHHHHHHHHHHHHcC---CCEEEE
Confidence 45566 898877543334567778999999999999886666555443 223 32 4555553 348999
Q ss_pred eC
Q 025866 100 SY 101 (247)
Q Consensus 100 ~f 101 (247)
|-
T Consensus 185 WL 186 (382)
T PF06187_consen 185 WL 186 (382)
T ss_dssp EE
T ss_pred ec
Confidence 95
No 140
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=51.88 E-value=58 Score=28.72 Aligned_cols=19 Identities=21% Similarity=0.155 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHcCCceEEe
Q 025866 56 VFRQQLELAKELKRPASIH 74 (247)
Q Consensus 56 vf~~qL~lA~~~~lpv~lH 74 (247)
-+...|+.-.++|+||.|=
T Consensus 170 ~~~~~l~~~~~~g~pi~iT 188 (254)
T smart00633 170 EIRAALDRFASLGLEIQIT 188 (254)
T ss_pred HHHHHHHHHHHcCCceEEE
Confidence 3566666666778888865
No 141
>TIGR01431 adm_rel adenosine deaminase-related growth factor. Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates.
Probab=51.27 E-value=2.5e+02 Score=27.63 Aligned_cols=85 Identities=14% Similarity=0.182 Sum_probs=55.7
Q ss_pred HHHHHHHH-HHHHcCCceEEeecccH-------HHHHHHHHhcCCCCCcEEEEeCCC--CHHHHHHHHHCCCeeeecccc
Q 025866 55 GVFRQQLE-LAKELKRPASIHCVRAF-------GDLLEIMKSVGPFPDGVIIHSYLG--SAEMVPELSKLGAYFSFSGFL 124 (247)
Q Consensus 55 ~vf~~qL~-lA~~~~lpv~lH~~~a~-------~~~l~iLk~~~~~~~~~I~H~fsG--s~~~~~~~l~~G~~~Si~~~i 124 (247)
.-|..++. ++++.++|+.+|+=... ..+.+.+ ..+. .| |=|+|+- .++.++.+.+.++-+-+.+..
T Consensus 306 ~~f~~~~~~~~~~~gl~~t~HAGE~~~~g~~~d~nl~dAI-lLg~--~R-IGHG~~l~~~P~l~~~vke~~I~lEvCP~S 381 (479)
T TIGR01431 306 LDFIDALLGPSDKEKLPYFFHAGETNWQGTTVDENLIDAL-LLNT--TR-IGHGFALVKHPLVLQMLKERNIAVEVNPIS 381 (479)
T ss_pred HHHHHHHHHHHHhCCCCEEEecCCcCCCCCCchhHHHHHH-HcCC--cc-ccCcccccCCHHHHHHHHHhCCeEEECccc
Confidence 44555554 56679999999997642 4566766 4543 22 4588765 478888888899888777642
Q ss_pred cc-ccc----c----------CCCCCceEEecCCCCC
Q 025866 125 MS-MKA----Q----------KVPSERILLETDAPDA 146 (247)
Q Consensus 125 ~~-~~~----~----------~iPldriLlETD~P~~ 146 (247)
.. .+. . .+| +.|-||.|-+
T Consensus 382 N~~l~~v~~~~~HPl~~lla~Gvp---v~InSDDP~~ 415 (479)
T TIGR01431 382 NQVLQLVADLRNHPCAYLFADNYP---MVISSDDPAF 415 (479)
T ss_pred hhhhcccCCcccChHHHHHHCCCc---EEEeCCCccc
Confidence 11 011 1 144 8899999965
No 142
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type. All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.
Probab=50.99 E-value=2.2e+02 Score=26.87 Aligned_cols=71 Identities=30% Similarity=0.218 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHHHHHHcCCceEE-eecccHHHHHHHH---HhcCCC-CCcEEEEeCCCCHHHHHHHHHCCCeeeeccc
Q 025866 49 DFMDQVGVFRQQLELAKELKRPASI-HCVRAFGDLLEIM---KSVGPF-PDGVIIHSYLGSAEMVPELSKLGAYFSFSGF 123 (247)
Q Consensus 49 ~~~~Q~~vf~~qL~lA~~~~lpv~l-H~~~a~~~~l~iL---k~~~~~-~~~~I~H~fsGs~~~~~~~l~~G~~~Si~~~ 123 (247)
+.........+.++||+..+.|+.| |.-- .+.++++ ++.|.. ..-+..|+..-+.+.++ +.|.++=+++.
T Consensus 193 p~~aE~~ai~~~~~la~~~~~~~~i~Hvs~--~~~l~~i~~a~~~g~~v~~ev~ph~L~~~~~~~~---~~~~~~k~~Pp 267 (411)
T TIGR00857 193 PPEAEEVAVARLLELAKHAGCPVHICHIST--KESLELIVKAKSQGIKITAEVTPHHLLLSEEDVA---RLDGNGKVNPP 267 (411)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCEEEEeCCC--HHHHHHHHHHHHcCCcEEEeechhhheecHHHHh---CCCccEEEcCC
Confidence 5677888889999999999999753 4433 3334444 443321 11234466555555433 35666666665
Q ss_pred c
Q 025866 124 L 124 (247)
Q Consensus 124 i 124 (247)
+
T Consensus 268 l 268 (411)
T TIGR00857 268 L 268 (411)
T ss_pred C
Confidence 4
No 143
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=50.22 E-value=1.1e+02 Score=25.37 Aligned_cols=106 Identities=14% Similarity=0.039 Sum_probs=56.6
Q ss_pred HHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHH--cCCceEEeec-ccH-HHHHHHHHhcCCCCC
Q 025866 19 FSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKE--LKRPASIHCV-RAF-GDLLEIMKSVGPFPD 94 (247)
Q Consensus 19 l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~--~~lpv~lH~~-~a~-~~~l~iLk~~~~~~~ 94 (247)
...+-+.+.+. +.+| |+|+++... ...+ +++..++ .+.|+.+|.- ... ...++.+.+.|. .
T Consensus 15 ~~~~~~~l~~~-i~~i-eig~~~~~~-------~g~~----~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGa--d 79 (202)
T cd04726 15 ALELAKKVPDG-VDII-EAGTPLIKS-------EGME----AVRALREAFPDKIIVADLKTADAGALEAEMAFKAGA--D 79 (202)
T ss_pred HHHHHHHhhhc-CCEE-EcCCHHHHH-------hCHH----HHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCC--C
Confidence 33344444444 5555 999887531 1112 2222222 3789999944 222 234566777764 3
Q ss_pred cEEEEeCCCC---HHHHHHHHHCCCeeee--cccccccc---ccCCCCCceEE
Q 025866 95 GVIIHSYLGS---AEMVPELSKLGAYFSF--SGFLMSMK---AQKVPSERILL 139 (247)
Q Consensus 95 ~~I~H~fsGs---~~~~~~~l~~G~~~Si--~~~i~~~~---~~~iPldriLl 139 (247)
.+++|..++. .+.++.+.+.|.-+.+ .+..+... ......|-+++
T Consensus 80 ~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~ 132 (202)
T cd04726 80 IVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKLGVDIVIL 132 (202)
T ss_pred EEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHCCCCEEEE
Confidence 4677998754 2345555667888775 23222211 12245676666
No 144
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=49.14 E-value=1.1e+02 Score=25.69 Aligned_cols=92 Identities=17% Similarity=0.066 Sum_probs=50.3
Q ss_pred hhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHc-CCceEEee--cccHHHHHHHHHhcCCC
Q 025866 16 PNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKEL-KRPASIHC--VRAFGDLLEIMKSVGPF 92 (247)
Q Consensus 16 ~~~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~-~lpv~lH~--~~a~~~~l~iLk~~~~~ 92 (247)
.+....+-+.+ ++.+.+| |||...... .. .++++ ++.+.+ +..+.+|. .+.....++.+.+.|.
T Consensus 11 ~~~a~~~~~~l-~~~v~~i-ev~~~l~~~--~g-----~~~i~---~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Ga- 77 (206)
T TIGR03128 11 IEEALELAEKV-ADYVDII-EIGTPLIKN--EG-----IEAVK---EMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGA- 77 (206)
T ss_pred HHHHHHHHHHc-ccCeeEE-EeCCHHHHH--hC-----HHHHH---HHHHHCCCCEEEEEEeeccchHHHHHHHHHcCC-
Confidence 33444455555 4555544 998554321 00 12222 233333 45666554 4555445677777764
Q ss_pred CCcEEEEeCCCC---HHHHHHHHHCCCeeeec
Q 025866 93 PDGVIIHSYLGS---AEMVPELSKLGAYFSFS 121 (247)
Q Consensus 93 ~~~~I~H~fsGs---~~~~~~~l~~G~~~Si~ 121 (247)
.-+++|++++. .+.++.+.++|..+.+.
T Consensus 78 -d~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 78 -DIVTVLGVADDATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred -CEEEEeccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 34678999864 45666777788877643
No 145
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=49.11 E-value=83 Score=29.81 Aligned_cols=37 Identities=22% Similarity=0.211 Sum_probs=27.9
Q ss_pred HHHHHHcCCc----eEEeecccHHHHHHHHHhcCCCCCcEEEEeC
Q 025866 61 LELAKELKRP----ASIHCVRAFGDLLEIMKSVGPFPDGVIIHSY 101 (247)
Q Consensus 61 L~lA~~~~lp----v~lH~~~a~~~~l~iLk~~~~~~~~~I~H~f 101 (247)
++.+.++|+. ++.|+....++.++.+++.+. .+.||-
T Consensus 228 ~~~l~~~G~l~~~~~~~H~~~l~~~~l~~la~~g~----~v~~~P 268 (424)
T PRK08393 228 VVLLDEIGFLNEDVIAAHGVWLSSRDIRILASAGV----TVAHNP 268 (424)
T ss_pred HHHHHHcCCCCCCcEEEEeecCCHHHHHHHHhcCC----EEEECH
Confidence 4555555543 689999999999999999863 577985
No 146
>PRK02382 dihydroorotase; Provisional
Probab=48.94 E-value=2.5e+02 Score=26.84 Aligned_cols=35 Identities=14% Similarity=0.262 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCC
Q 025866 204 ANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 239 (247)
Q Consensus 204 ~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~ 239 (247)
..++.++. +..-.+++++++.+.+..|.-++|+++
T Consensus 327 ~~~~~~~~-~~~~~~~~l~~~~~~~t~~pA~~~g~~ 361 (443)
T PRK02382 327 TMLPLLLA-AVRKNRLPLERVRDVTAANPARIFGLD 361 (443)
T ss_pred HHHHHHHH-HHHcCCCCHHHHHHHHhHHHHHHcCCC
Confidence 36777775 345568999999999999999999995
No 147
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=48.91 E-value=36 Score=32.59 Aligned_cols=49 Identities=20% Similarity=0.363 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHcCCceEEeecccHHHHHHHHHh---cCCCCCcEEE--EeCCC
Q 025866 53 QVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKS---VGPFPDGVII--HSYLG 103 (247)
Q Consensus 53 Q~~vf~~qL~lA~~~~lpv~lH~~~a~~~~l~iLk~---~~~~~~~~I~--H~fsG 103 (247)
-++-+...++||.++++||++|+.+..+++-.+... +|.. -+++ |-|.|
T Consensus 190 te~n~~e~~klav~y~vplvl~a~~dl~~lk~la~~~~~~Gi~--divLdPgT~p~ 243 (467)
T COG1456 190 TEDNWKEFAKLAVEYKVPLVLSAFNDLDDLKNLAVTYAQAGIK--DIVLDPGTYPG 243 (467)
T ss_pred ccccHHHHHHHHhhcCCcEEEeccCCHHHHHHHHHHHHHcCCc--eEEecCCcccC
Confidence 345677889999999999999999888777665544 4431 2344 66655
No 148
>PRK07583 cytosine deaminase-like protein; Validated
Probab=48.36 E-value=2.1e+02 Score=27.30 Aligned_cols=23 Identities=4% Similarity=0.092 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCC
Q 025866 218 DMTKEELAELSYRNAIRLFSYEG 240 (247)
Q Consensus 218 ~~s~e~l~~~~~~N~~~~f~~~~ 240 (247)
+.+.+++.+..+.|.-+++++.+
T Consensus 359 ~~~~~~al~~~T~~~A~~lg~~~ 381 (438)
T PRK07583 359 DHPYDDWPAAVTTTPADIMGLPD 381 (438)
T ss_pred CCcHHHHHHHHhHHHHHHcCCCC
Confidence 67889999999999999999864
No 149
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=47.22 E-value=41 Score=26.03 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEeecccHHH
Q 025866 50 FMDQVGVFRQQLELAKELKRPASIHCVRAFGD 81 (247)
Q Consensus 50 ~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~~ 81 (247)
...+...+.++++-+.+.+.||.|||..+.++
T Consensus 63 ~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~R 94 (139)
T cd00127 63 ISKYFDEAVDFIDDAREKGGKVLVHCLAGVSR 94 (139)
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEECCCCCch
Confidence 34455556667777777889999999987544
No 150
>PRK05451 dihydroorotase; Provisional
Probab=47.19 E-value=88 Score=29.03 Aligned_cols=35 Identities=6% Similarity=0.117 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCCCC
Q 025866 205 NIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEGS 241 (247)
Q Consensus 205 ~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~~~ 241 (247)
.++-++..+.. .+ +++.+.+.+..|.-++||+...
T Consensus 272 g~~~~~~~~~~-~~-~l~~~v~~~s~nPAkifGl~~~ 306 (345)
T PRK05451 272 ALELYAEVFEE-AG-ALDKLEAFASLNGPDFYGLPRN 306 (345)
T ss_pred HHHHHHHHHHc-CC-CHHHHHHHHhHHHHHHhCCCCC
Confidence 34444443322 34 9999999999999999999643
No 151
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=46.45 E-value=2.5e+02 Score=26.18 Aligned_cols=153 Identities=12% Similarity=0.088 Sum_probs=80.4
Q ss_pred HHHHHHHHHcCCceE-EeecccHHHHHHHHHhcCCCCCcEEEEeCCCCHHH-------HHHHHHC-CCeeeecccc--cc
Q 025866 58 RQQLELAKELKRPAS-IHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEM-------VPELSKL-GAYFSFSGFL--MS 126 (247)
Q Consensus 58 ~~qL~lA~~~~lpv~-lH~~~a~~~~l~iLk~~~~~~~~~I~H~fsGs~~~-------~~~~l~~-G~~~Si~~~i--~~ 126 (247)
.+.++.|.++|++|. =|+......+.+.++ .|. +.+=|.|++-... +..++.. ..|+++-..- ..
T Consensus 175 ~~~i~~~~~~gi~v~~GH~~a~~~~~~~a~~-~G~---~~~tH~~n~m~~~~~r~~~~~~a~l~~~~~~~~li~dg~Hv~ 250 (374)
T cd00854 175 LELIRYLVERGIIVSIGHSDATYEQAVAAFE-AGA---THVTHLFNAMSPLHHREPGVVGAALSDDDVYAELIADGIHVH 250 (374)
T ss_pred HHHHHHHHHCCeEEEeeCCcCCHHHHHHHHH-cCC---CeeeECCCCCCCcCCCCCcHHHHhhcCCCCeEEEEcCCCcCC
Confidence 678888999999995 777655555555554 332 2355777663322 2223332 3455443211 11
Q ss_pred cc----ccC-CCCCceEEecCCCCCCCchhhccccccCCCCCCcccccccccCCCCCCCCCCcccccCCC-CCCCCCccc
Q 025866 127 MK----AQK-VPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKD-SSTLPKETL 200 (247)
Q Consensus 127 ~~----~~~-iPldriLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~ 200 (247)
.. ..+ .+.+|+++-||+-...-.|. +.+.|-..+-. ... |.. ..+ ..--
T Consensus 251 ~~~~~~~~r~~g~~~~~lvtD~~~~~G~~~-g~y~~~~~~~~-----------~~~-----------~~~~~~~--g~la 305 (374)
T cd00854 251 PAAVRLAYRAKGADKIVLVTDAMAAAGLPD-GEYELGGQTVT-----------VKD-----------GVARLAD--GTLA 305 (374)
T ss_pred HHHHHHHHHhcCCCcEEEEeccccccCCCC-CeEEECCEEEE-----------EEC-----------CEEEcCC--CCee
Confidence 11 112 35699999999832111000 01111110000 000 000 000 0011
Q ss_pred CcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCC
Q 025866 201 NHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYE 239 (247)
Q Consensus 201 n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~ 239 (247)
.....+.+.++.+.+..+++++++.+..+.|.-+++++.
T Consensus 306 G~~~~l~~~~~~l~~~~~l~~~~al~~aT~npA~~lg~~ 344 (374)
T cd00854 306 GSTLTMDQAVRNMVKWGGCPLEEAVRMASLNPAKLLGLD 344 (374)
T ss_pred ehHhhHHHHHHHHHHhhCCCHHHHHHHHhHHHHHHcCCC
Confidence 112457777777777778999999999999999999987
No 152
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=46.09 E-value=96 Score=28.94 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=27.2
Q ss_pred HHHHHHcCC----ceEEeecccHHHHHHHHHhcCCCCCcEEEEeCC
Q 025866 61 LELAKELKR----PASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYL 102 (247)
Q Consensus 61 L~lA~~~~l----pv~lH~~~a~~~~l~iLk~~~~~~~~~I~H~fs 102 (247)
++...++|+ .+..||....++-++++++.+. .+.||-+
T Consensus 228 ~~~l~~~g~lg~~~~~~H~~~~~~~~~~~l~~~g~----~v~~~P~ 269 (401)
T TIGR02967 228 LDVYDHYGLLGRRSVFAHCIHLSDEECQRLAETGA----AIAHCPT 269 (401)
T ss_pred HHHHHHCCCCCCCeEEEecccCCHHHHHHHHHcCC----eEEEChH
Confidence 344445553 3679999999999999999863 4678853
No 153
>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA. Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.
Probab=45.61 E-value=84 Score=30.07 Aligned_cols=51 Identities=14% Similarity=0.263 Sum_probs=38.2
Q ss_pred CceEEeecccHHHHHHHHHhcCCCCCcEEEEeCCCCH------HHHHHHHHCCCeeeeccc
Q 025866 69 RPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSA------EMVPELSKLGAYFSFSGF 123 (247)
Q Consensus 69 lpv~lH~~~a~~~~l~iLk~~~~~~~~~I~H~fsGs~------~~~~~~l~~G~~~Si~~~ 123 (247)
..+..||....++-+++|.+.+. .|.||-..+. .-+.++++.|+-++++-.
T Consensus 255 ~~~~~H~~~~~~~d~~~la~~g~----~v~~cP~sn~~l~~G~~p~~~~~~~Gv~v~LGtD 311 (441)
T TIGR03314 255 KTLAAHCIYLSDREIELLNETDT----FVVHNPESNMGNAVGYNPVLRMFKNGILLGLGTD 311 (441)
T ss_pred CeEEEEEecCCHHHHHHHHHcCC----cEEECHHHHhhhccCCCCHHHHHHCCCEEEEcCC
Confidence 35679999999999999999863 5779874332 234778888988888753
No 154
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=45.59 E-value=1.8e+02 Score=24.18 Aligned_cols=88 Identities=13% Similarity=0.148 Sum_probs=54.0
Q ss_pred hHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecccHHHHHHHHHhcCCCCCcE
Q 025866 17 NWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGV 96 (247)
Q Consensus 17 ~~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~~~l~iLk~~~~~~~~~ 96 (247)
+.++.+++.+..+ +.+| - ++. ...+.....+.+.+..+++++++.|++||.. .++..+.+. .+
T Consensus 14 ~~~~~~~~~~~~g-~~~v---~--lR~--~~~~~~~~~~~~~~l~~~~~~~~~~l~i~~~------~~la~~~g~--~G- 76 (196)
T TIGR00693 14 DLLNRVEAALKGG-VTLV---Q--LRD--KGSNTRERLALAEKLQELCRRYGVPFIVNDR------VDLALALGA--DG- 76 (196)
T ss_pred cHHHHHHHHHhcC-CCEE---E--Eec--CCCCHHHHHHHHHHHHHHHHHhCCeEEEECH------HHHHHHcCC--CE-
Confidence 4567777777654 3343 1 121 1234566778899999999999999999873 456666653 22
Q ss_pred EEEeCC--CCHHHHHHHHHCCCeeeecc
Q 025866 97 IIHSYL--GSAEMVPELSKLGAYFSFSG 122 (247)
Q Consensus 97 I~H~fs--Gs~~~~~~~l~~G~~~Si~~ 122 (247)
+|.-. -+.+.++..+..+..+|.+-
T Consensus 77 -vHl~~~~~~~~~~r~~~~~~~~ig~s~ 103 (196)
T TIGR00693 77 -VHLGQDDLPASEARALLGPDKIIGVST 103 (196)
T ss_pred -EecCcccCCHHHHHHhcCCCCEEEEeC
Confidence 34421 23456666666666666553
No 155
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=45.45 E-value=17 Score=28.55 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=7.4
Q ss_pred cEEEEeCCCCHHHH
Q 025866 95 GVIIHSYLGSAEMV 108 (247)
Q Consensus 95 ~~I~H~fsGs~~~~ 108 (247)
.+.+||-||.-..+
T Consensus 88 Pvl~hC~sG~Ra~~ 101 (110)
T PF04273_consen 88 PVLAHCRSGTRASA 101 (110)
T ss_dssp SEEEE-SCSHHHHH
T ss_pred CEEEECCCChhHHH
Confidence 35667777754433
No 156
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=45.00 E-value=93 Score=27.89 Aligned_cols=64 Identities=23% Similarity=0.286 Sum_probs=38.6
Q ss_pred HHHHHHHHHcCCceE-Eeeccc--------------------HHHHHHHHHhcCCCCCcEEE---EeCCCC-------HH
Q 025866 58 RQQLELAKELKRPAS-IHCVRA--------------------FGDLLEIMKSVGPFPDGVII---HSYLGS-------AE 106 (247)
Q Consensus 58 ~~qL~lA~~~~lpv~-lH~~~a--------------------~~~~l~iLk~~~~~~~~~I~---H~fsGs-------~~ 106 (247)
.+.++++++++.+++ +|..+. ..+.++.+.+.|..+.++++ ..|..+ .+
T Consensus 110 ~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~Ii~DPg~gf~ks~~~~~~~l~ 189 (257)
T cd00739 110 PAMLEVAAEYGAPLVLMHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAESAGVARNRIILDPGIGFGKTPEHNLELLR 189 (257)
T ss_pred hHHHHHHHHcCCCEEEECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEecCCCcccCHHHHHHHHH
Confidence 566788999999977 566421 22344566677765445665 567666 44
Q ss_pred HHHHHHHCCCeeeec
Q 025866 107 MVPELSKLGAYFSFS 121 (247)
Q Consensus 107 ~~~~~l~~G~~~Si~ 121 (247)
..+.+.++|+-+.++
T Consensus 190 ~i~~l~~~~~pil~G 204 (257)
T cd00739 190 RLDELKQLGLPVLVG 204 (257)
T ss_pred HHHHHHhCCCcEEEE
Confidence 455555556544444
No 157
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=44.68 E-value=45 Score=26.16 Aligned_cols=55 Identities=22% Similarity=0.204 Sum_probs=34.3
Q ss_pred HHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecc-cHHHHHH
Q 025866 19 FSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVR-AFGDLLE 84 (247)
Q Consensus 19 l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~-a~~~~l~ 84 (247)
+..+-+.+.+..+.|+| |++..+.. ++=+..+++|.++++||+.--.+ ...++.+
T Consensus 61 ~~~~i~~L~~~~~agL~-i~~~~~~~----------~iP~~~i~~A~~~~lPli~ip~~~~f~~I~~ 116 (123)
T PF07905_consen 61 LREFIRELAEKGAAGLG-IKTGRYLD----------EIPEEIIELADELGLPLIEIPWEVPFSDITR 116 (123)
T ss_pred HHHHHHHHHHCCCeEEE-EeccCccc----------cCCHHHHHHHHHcCCCEEEeCCCCCHHHHHH
Confidence 44444445556788887 66664432 22266789999999999865554 3444443
No 158
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=44.35 E-value=63 Score=29.67 Aligned_cols=59 Identities=12% Similarity=0.210 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHcCCceEEeeccc------HHHHHHH----HHhcCCCCCcEEEEeCCC-CHHHHHHHHHCCC
Q 025866 55 GVFRQQLELAKELKRPASIHCVRA------FGDLLEI----MKSVGPFPDGVIIHSYLG-SAEMVPELSKLGA 116 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a------~~~~l~i----Lk~~~~~~~~~I~H~fsG-s~~~~~~~l~~G~ 116 (247)
+..+..++.|++.+.||+|-.-.. .+.+..+ .++++. .+.+|-=-| +.+.++++++.||
T Consensus 29 e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~V---PValHLDHg~~~e~i~~ai~~GF 98 (286)
T PRK12738 29 ETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNM---PLALHLDHHESLDDIRRKVHAGV 98 (286)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCC---CEEEECCCCCCHHHHHHHHHcCC
Confidence 678889999999999999965332 2223333 334432 355543333 7899999999986
No 159
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=43.83 E-value=90 Score=25.28 Aligned_cols=94 Identities=19% Similarity=0.321 Sum_probs=59.8
Q ss_pred CChhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeeccc------HHHHHHHHH
Q 025866 14 RTPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRA------FGDLLEIMK 87 (247)
Q Consensus 14 ~~~~~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a------~~~~l~iLk 87 (247)
.++..++.++.-+..+ +-+| |+=+-....+. .-.-+-.--|+..|+.+.+ +..++|..... ...++++++
T Consensus 11 ~pent~~a~~~a~~~g-~~~i-E~Dv~~tkDg~-~vv~Hdi~tL~e~l~~~~~-~~~i~leiK~~~~~~~~~~~l~~~i~ 86 (189)
T cd08556 11 APENTLAAFRKALEAG-ADGV-ELDVQLTKDGV-LVVIHDIPTLEEVLELVKG-GVGLNIELKEPTRYPGLEAKVAELLR 86 (189)
T ss_pred CCchHHHHHHHHHHcC-CCEE-EEEeeEcCCCC-EEEEcCCCCHHHHHHhccc-CcEEEEEECCCCCchhHHHHHHHHHH
Confidence 3566677777777654 2233 55554332211 0001113457788888887 88899988874 356888889
Q ss_pred hcCCCCCcEEEEeCCCCHHHHHHHHHC
Q 025866 88 SVGPFPDGVIIHSYLGSAEMVPELSKL 114 (247)
Q Consensus 88 ~~~~~~~~~I~H~fsGs~~~~~~~l~~ 114 (247)
+++. ..++++.+| +.+.++.+.+.
T Consensus 87 ~~~~-~~~v~i~s~--~~~~l~~~~~~ 110 (189)
T cd08556 87 EYGL-EERVVVSSF--DHEALRALKEL 110 (189)
T ss_pred HcCC-cCCEEEEeC--CHHHHHHHHHh
Confidence 9874 357899999 46777777664
No 160
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=43.82 E-value=1.3e+02 Score=26.36 Aligned_cols=60 Identities=10% Similarity=0.024 Sum_probs=37.8
Q ss_pred CChhHHHHHHHHhhcCCceEEE-eecCCC--CCCCC-CCCHHHHHHHHHHHHHHHHHcCCceEE
Q 025866 14 RTPNWFSTLKEFFEITPAAAVG-EIGLDK--GSKGR-EIDFMDQVGVFRQQLELAKELKRPASI 73 (247)
Q Consensus 14 ~~~~~l~~l~~~l~~~~~~aIG-EIGLD~--~~~~~-~~~~~~Q~~vf~~qL~lA~~~~lpv~l 73 (247)
.++..++.+.+.+++..+...+ .++... ..... ....+...+.+++.+++|+++|.+.+.
T Consensus 54 ~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~ 117 (283)
T PRK13209 54 WSREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQ 117 (283)
T ss_pred CCHHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 3677899999999886543221 233221 11110 112455678999999999999999774
No 161
>PRK01060 endonuclease IV; Provisional
Probab=43.81 E-value=92 Score=27.39 Aligned_cols=67 Identities=9% Similarity=-0.095 Sum_probs=40.1
Q ss_pred cccCCCChhHHHHHHHHhhcCCce--EE-EeecCCCCCCCC-CCCHHHHHHHHHHHHHHHHHcCCc-eEEee
Q 025866 9 RFVQERTPNWFSTLKEFFEITPAA--AV-GEIGLDKGSKGR-EIDFMDQVGVFRQQLELAKELKRP-ASIHC 75 (247)
Q Consensus 9 ~~~~~~~~~~l~~l~~~l~~~~~~--aI-GEIGLD~~~~~~-~~~~~~Q~~vf~~qL~lA~~~~lp-v~lH~ 75 (247)
|.....+++.++.+.+++++..+. ++ ............ ...++.-.+.+++.+++|.++|.+ |++|.
T Consensus 39 ~~~~~~~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~~~~~~i~~A~~lga~~vv~h~ 110 (281)
T PRK01060 39 WKRKPLEELNIEAFKAACEKYGISPEDILVHAPYLINLGNPNKEILEKSRDFLIQEIERCAALGAKLLVFHP 110 (281)
T ss_pred CcCCCCCHHHHHHHHHHHHHcCCCCCceEEecceEecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 333345777889999999876542 11 111111111110 112345577899999999999998 55775
No 162
>PRK13995 potassium-transporting ATPase subunit C; Provisional
Probab=42.76 E-value=33 Score=30.03 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=29.1
Q ss_pred chhHHHHHHHHHHccCCCHHHHHHHHHHHHH-HhhCC
Q 025866 203 PANIHNVLDYVASLLDMTKEELAELSYRNAI-RLFSY 238 (247)
Q Consensus 203 P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~-~~f~~ 238 (247)
|.+-..=+..+|+.+|++.++|.+++.+|+. +.|++
T Consensus 145 p~aA~~Qv~RVA~argl~~~~v~~LV~~~t~~~~lG~ 181 (203)
T PRK13995 145 PKSAAIQIPAVSKATGISESKLKKIVKDNTEGKTFGV 181 (203)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCCCcCc
Confidence 5555556668999999999999999999998 44554
No 163
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=42.56 E-value=47 Score=27.12 Aligned_cols=61 Identities=11% Similarity=0.174 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHHHHHHcCCceEEeecccH--------HHHHHHHHhcCCCCCcEEE---EeCCCCHHHHH
Q 025866 49 DFMDQVGVFRQQLELAKELKRPASIHCVRAF--------GDLLEIMKSVGPFPDGVII---HSYLGSAEMVP 109 (247)
Q Consensus 49 ~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~--------~~~l~iLk~~~~~~~~~I~---H~fsGs~~~~~ 109 (247)
.++.-.+.|++.+++|+++|.-+.++.-... +++.+++++.+....++.+ |++....+...
T Consensus 106 ~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~D~~h~~~~~~~~~~ 177 (213)
T PF01261_consen 106 NWERLAENLRELAEIAEEYGVRIALENHPGPFSETPFSVEEIYRLLEEVDSPNVGICFDTGHLIMAGEDPDE 177 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEESSHHHHHHHHHHHTTTTEEEEEEHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhcceEEEecccCccccchhhHHHHHHHHhhcCCCcceEEEehHHHHHcCCCHHH
Confidence 3456677899999999999999999987642 8899999998754445555 77655443333
No 164
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=42.19 E-value=1.9e+02 Score=23.48 Aligned_cols=73 Identities=14% Similarity=0.086 Sum_probs=41.9
Q ss_pred eeeecccccCCCC--hhHHHHHHHHhhcCCceEEEeecCCCCCCCC-----CCC--HHHHHHHHHHHHHHHHHcCCc-eE
Q 025866 3 WVCFIFRFVQERT--PNWFSTLKEFFEITPAAAVGEIGLDKGSKGR-----EID--FMDQVGVFRQQLELAKELKRP-AS 72 (247)
Q Consensus 3 ~~g~hP~~~~~~~--~~~l~~l~~~l~~~~~~aIGEIGLD~~~~~~-----~~~--~~~Q~~vf~~qL~lA~~~~lp-v~ 72 (247)
++-+.++...... ...++.+.+++.+..+. |..+......... ... .+.-.+.+.+.+++|+++|.+ ++
T Consensus 11 ~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~-i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~ 89 (213)
T PF01261_consen 11 GVELRFDDGQPWDEKDDEAEELRRLLEDYGLK-IASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYIV 89 (213)
T ss_dssp EEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCE-EEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEEE
T ss_pred EEEEecCCCcccccchHHHHHHHHHHHHcCCe-EEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCcee
Confidence 3444444443333 35688999999887653 2222222221110 001 344477999999999999977 55
Q ss_pred Eeec
Q 025866 73 IHCV 76 (247)
Q Consensus 73 lH~~ 76 (247)
+|+.
T Consensus 90 ~~~g 93 (213)
T PF01261_consen 90 VHSG 93 (213)
T ss_dssp EECT
T ss_pred ecCc
Confidence 7755
No 165
>PRK13985 ureB urease subunit beta; Provisional
Probab=41.39 E-value=63 Score=32.61 Aligned_cols=49 Identities=20% Similarity=0.223 Sum_probs=34.4
Q ss_pred HHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeeccc
Q 025866 19 FSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRA 78 (247)
Q Consensus 19 l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a 78 (247)
++.|.+++.. .+++++ ++.|+.. + -..+.+.|+.|.+++.||.+|+...
T Consensus 203 l~eL~el~~a-GA~GfK-~~ed~g~-----t----~~~I~~aL~vA~~~dv~V~iHtdtl 251 (568)
T PRK13985 203 DASLADQIEA-GAIGFK-IHEDWGT-----T----PSAINHALDVADKYDVQVAIHTDTL 251 (568)
T ss_pred HHHHHHHHHc-CCEEEE-ECCccCC-----C----HHHHHHHHHHHHHcCCEEEEeCCCC
Confidence 5667776643 355665 5555431 1 1578888999999999999999974
No 166
>PRK06846 putative deaminase; Validated
Probab=41.25 E-value=2.5e+02 Score=26.42 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHcC---CceEEeecc----cHHH---HHHHHHhcCCCCCcEEEEeCC--CCHHHHHHHHHCCCeeeecc
Q 025866 55 GVFRQQLELAKELK---RPASIHCVR----AFGD---LLEIMKSVGPFPDGVIIHSYL--GSAEMVPELSKLGAYFSFSG 122 (247)
Q Consensus 55 ~vf~~qL~lA~~~~---lpv~lH~~~----a~~~---~l~iLk~~~~~~~~~I~H~fs--Gs~~~~~~~l~~G~~~Si~~ 122 (247)
..+++.++++.+.+ ..+..||.. ..++ +++++++.+. .|.|+.. ...--++++++.|+-++++.
T Consensus 235 ~~~~~~~~~~~~~gl~~~v~~~H~~~l~~~~~~e~~~li~~la~~g~----~v~~~~~~~~g~~p~~~l~~~Gv~v~lGt 310 (410)
T PRK06846 235 ATIKYLVETTEEAQWKGKVTISHAFALGDLNEEEVEELAERLAAQGI----SITSTVPIGRLHMPIPLLHDKGVKVSLGT 310 (410)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEecchhhcCCHHHHHHHHHHHHHcCC----eEEEeCCCCCCCCCHHHHHhCCCeEEEec
Confidence 33455677777766 456789984 2233 4567777763 3557542 12345688999999999886
Q ss_pred c
Q 025866 123 F 123 (247)
Q Consensus 123 ~ 123 (247)
.
T Consensus 311 D 311 (410)
T PRK06846 311 D 311 (410)
T ss_pred C
Confidence 4
No 167
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=41.07 E-value=1.4e+02 Score=27.65 Aligned_cols=65 Identities=12% Similarity=0.120 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHc-CCceEEeecccHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCCeeeecc
Q 025866 54 VGVFRQQLELAKEL-KRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSG 122 (247)
Q Consensus 54 ~~vf~~qL~lA~~~-~lpv~lH~~~a~~~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~G~~~Si~~ 122 (247)
...+++.++-.++. +.|+++|+.++...+++.+.+.+.. .+-+.+-..+...+++.+ |--+++.|
T Consensus 197 ~P~~krIi~~ik~~~g~piilH~cG~~~~~l~~~~e~g~d--vl~~d~~~~dl~eak~~~--g~k~~l~G 262 (321)
T cd03309 197 LPRMQRIFDFLRSNTSALIVHHSCGAAASLVPSMAEMGVD--SWNVVMTANNTAELRRLL--GDKVVLAG 262 (321)
T ss_pred HHHHHHHHHHHHhccCCceEEEeCCCcHHHHHHHHHcCCC--EEEecCCCCCHHHHHHHh--CCCeEEEc
Confidence 34446777777776 7899999999988889999888642 122223223555555444 43344554
No 168
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=40.87 E-value=1.7e+02 Score=26.48 Aligned_cols=53 Identities=15% Similarity=0.118 Sum_probs=38.7
Q ss_pred HcCCceEEeeccc--HHHHHHHHHhcCCCCCcEEEEeCCCC----------HHHHHHHHHCCCeeeecc
Q 025866 66 ELKRPASIHCVRA--FGDLLEIMKSVGPFPDGVIIHSYLGS----------AEMVPELSKLGAYFSFSG 122 (247)
Q Consensus 66 ~~~lpv~lH~~~a--~~~~l~iLk~~~~~~~~~I~H~fsGs----------~~~~~~~l~~G~~~Si~~ 122 (247)
++|.-.+.|+... .++.++++++.+. .+.||-+.+ ..-++++++.|+-++++.
T Consensus 207 ~~g~~ri~Hg~~l~~~~~~i~~l~~~gi----~v~~cP~Sn~~l~~~~~~~~~pi~~l~~~Gv~v~igT 271 (324)
T TIGR01430 207 DLGATRIGHGVRALEDPELLKRLAQENI----TLEVCPTSNVALGVVKSLAEHPLRRFLEAGVKVTLNS 271 (324)
T ss_pred HcCchhcchhhhhccCHHHHHHHHHcCc----eEEECCcccccccccCCcccChHHHHHHCCCEEEECC
Confidence 4676678999988 5678999998763 455665443 223688899999999885
No 169
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=40.84 E-value=2e+02 Score=24.83 Aligned_cols=44 Identities=11% Similarity=0.067 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHcCCceEEeec----------ccHHHHHHHHHhcCCCCCcEEE
Q 025866 55 GVFRQQLELAKELKRPASIHCV----------RAFGDLLEIMKSVGPFPDGVII 98 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~----------~a~~~~l~iLk~~~~~~~~~I~ 98 (247)
+.+++..++|++.|..+.++.. ....++++++++.+....++.+
T Consensus 123 ~~l~~l~~~A~~~gi~l~lE~~~~~~~~~~~l~t~~~~~~li~~v~~~~~~i~~ 176 (254)
T TIGR03234 123 ENLRYAADALDRIGLTLLIEPINSFDMPGFFLTTTEQALAVIDDVGRENLKLQY 176 (254)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCcccCCCChhcCHHHHHHHHHHhCCCCEeEee
Confidence 5678888999999999999863 2457888999987643344433
No 170
>PRK14001 potassium-transporting ATPase subunit C; Provisional
Probab=40.39 E-value=37 Score=29.43 Aligned_cols=36 Identities=11% Similarity=0.043 Sum_probs=28.8
Q ss_pred chhHHHHHHHHHHccCCCHHHHHHHHHHHHHH-hhCC
Q 025866 203 PANIHNVLDYVASLLDMTKEELAELSYRNAIR-LFSY 238 (247)
Q Consensus 203 P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~-~f~~ 238 (247)
|..-..=+..+|+.+|+++++|.+++.+|+.. .|++
T Consensus 135 ~~aA~~Qv~RVA~argl~~~~v~~LV~~~t~~~~lG~ 171 (189)
T PRK14001 135 VVNAKLQAPRVAQARNISIRQVERLIEDHTDARGLGF 171 (189)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCCCcCC
Confidence 55555556689999999999999999999983 4444
No 171
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=39.85 E-value=2.6e+02 Score=24.50 Aligned_cols=39 Identities=10% Similarity=0.170 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHcCCceEEeecc-----cHHHHHHHHHhcCC
Q 025866 53 QVGVFRQQLELAKELKRPASIHCVR-----AFGDLLEIMKSVGP 91 (247)
Q Consensus 53 Q~~vf~~qL~lA~~~~lpv~lH~~~-----a~~~~l~iLk~~~~ 91 (247)
-.+.|++.+++|+++|..+.+|... ...++++++++.+.
T Consensus 136 ~~~~l~~l~~~A~~~GV~i~iE~~~~~~~~~~~~~~~ll~~v~~ 179 (283)
T PRK13209 136 FIDGLKESVELASRASVTLAFEIMDTPFMNSISKALGYAHYLNS 179 (283)
T ss_pred HHHHHHHHHHHHHHhCCEEEEeecCCcccCCHHHHHHHHHHhCC
Confidence 3556677788888888888887653 34567777777653
No 172
>PRK00315 potassium-transporting ATPase subunit C; Reviewed
Probab=39.34 E-value=38 Score=29.45 Aligned_cols=37 Identities=24% Similarity=0.295 Sum_probs=29.3
Q ss_pred chhHHHHHHHHHHccCCCHHHHHHHHHHHHH-HhhCCC
Q 025866 203 PANIHNVLDYVASLLDMTKEELAELSYRNAI-RLFSYE 239 (247)
Q Consensus 203 P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~-~~f~~~ 239 (247)
|..-..=+..+|+.+|++.++|.+++.+|+. +.|++-
T Consensus 135 ~~aA~~Qv~RVA~argl~~~~v~~LI~~~t~~~~lG~~ 172 (193)
T PRK00315 135 PAAAAYQIPRVAAARQLPVEQVAQLVAAYTQGPLFGFL 172 (193)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCCCcccC
Confidence 4455555668999999999999999999998 555543
No 173
>PRK09059 dihydroorotase; Validated
Probab=39.27 E-value=2.6e+02 Score=26.78 Aligned_cols=152 Identities=15% Similarity=0.154 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCCceEE-eeccc-HHHHHHHHHhcCCC-CCcEEEEeCCCCHHHHHHHHHCCCeeeeccccc
Q 025866 49 DFMDQVGVFRQQLELAKELKRPASI-HCVRA-FGDLLEIMKSVGPF-PDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLM 125 (247)
Q Consensus 49 ~~~~Q~~vf~~qL~lA~~~~lpv~l-H~~~a-~~~~l~iLk~~~~~-~~~~I~H~fsGs~~~~~~~l~~G~~~Si~~~i~ 125 (247)
|...+.....+.+++|+..+.|+.| |.-.+ .-++++..++.|.. ..-+..|+..-+.+.+ -+.|.++=++|.+.
T Consensus 212 P~~aE~~av~r~~~la~~~~~~~hi~hvs~~~~~~~i~~ak~~g~~vt~ev~phhL~l~~~~~---~~~~~~~kvnPPLR 288 (429)
T PRK09059 212 PREAEVIPLERDLRLAALTRGRYHAAQISCAESAEALRRAKDRGLKVTAGVSINHLSLNENDI---GEYRTFFKLSPPLR 288 (429)
T ss_pred CHHHHHHHHHHHHHHHHHHCCcEEEEecCCHHHHHHHHHHHHCCCCEEEeecHHHHhccHHHH---hccCCccEEcCCCC
Confidence 4566777888999999999998654 32221 12333344444421 0112345544444332 23576667777554
Q ss_pred cccccC-----C---CCCceEEecCCCCCCCchhhccccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCCCC
Q 025866 126 SMKAQK-----V---PSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPK 197 (247)
Q Consensus 126 ~~~~~~-----i---PldriLlETD~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 197 (247)
....+. + -.| ++.=-++|+....... -+| . .+.
T Consensus 289 ~~~d~~~L~~~l~~g~id-~i~sDh~p~~~~~K~~--~~~-~-----------------------------------~~~ 329 (429)
T PRK09059 289 TEDDRVAMVEAVASGTID-IIVSSHDPQDVDTKRL--PFS-E-----------------------------------AAA 329 (429)
T ss_pred CHHHHHHHHHHHHcCCCc-EEEeCCCCCCHHHCcC--Chh-h-----------------------------------CCC
Confidence 322111 1 123 4443334442110000 000 0 000
Q ss_pred cccCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCCCCcc
Q 025866 198 ETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEGSKI 243 (247)
Q Consensus 198 ~~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~~~~~ 243 (247)
+-..-...++..+. +....+++.+++.+.+..|.-|+|++..+.|
T Consensus 330 G~~gle~~l~~~~~-~v~~~~l~l~~~~~~~s~nPA~~~gl~~G~l 374 (429)
T PRK09059 330 GAIGLETLLAAALR-LYHNGEVPLLRLIEALSTRPAEIFGLPAGTL 374 (429)
T ss_pred CcccHHHHHHHHHH-HHHcCCCCHHHHHHHHhHHHHHHhCCCcCcc
Confidence 12223345666665 4455679999999999999999999964433
No 174
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=39.06 E-value=1.7e+02 Score=25.50 Aligned_cols=49 Identities=14% Similarity=0.070 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHcCCceEEeec----------ccHHHHHHHHHhcCCCCCcEEE---EeCC
Q 025866 54 VGVFRQQLELAKELKRPASIHCV----------RAFGDLLEIMKSVGPFPDGVII---HSYL 102 (247)
Q Consensus 54 ~~vf~~qL~lA~~~~lpv~lH~~----------~a~~~~l~iLk~~~~~~~~~I~---H~fs 102 (247)
.+.+.+..++|++.|..+.+|.. ....++++++++.+....++++ |.+.
T Consensus 123 ~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~~~~~~~~~~~~~ll~~v~~~~v~l~~D~~h~~~ 184 (258)
T PRK09997 123 VENLRYAANMLMKEDILLLIEPINHFDIPGFHLTGTRQALKLIDDVGCCNLKIQYDIYHMQR 184 (258)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCcCCCCCccCCHHHHHHHHHHhCCCCEEEEeEHHHhhh
Confidence 45667778889999999999853 2356788899887643344444 6654
No 175
>PRK14003 potassium-transporting ATPase subunit C; Provisional
Probab=38.41 E-value=45 Score=29.04 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=29.1
Q ss_pred chhHHHHHHHHHHccCCCHHHHHHHHHHHHH-HhhCC
Q 025866 203 PANIHNVLDYVASLLDMTKEELAELSYRNAI-RLFSY 238 (247)
Q Consensus 203 P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~-~~f~~ 238 (247)
|.+-..=+..+|+.+|++.++|.+++.+|+. +.|++
T Consensus 138 p~aA~~Qv~RVA~argl~~~~v~~LI~~~t~~~~lG~ 174 (194)
T PRK14003 138 PEAARAQIERVAKARGLPPDQLEILITKNTDGRFLGI 174 (194)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHhhCCCCCC
Confidence 5555666668999999999999999999998 44554
No 176
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=38.13 E-value=39 Score=20.81 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=16.8
Q ss_pred HHHHHHccCCCHHHHHHHHHH
Q 025866 210 LDYVASLLDMTKEELAELSYR 230 (247)
Q Consensus 210 ~~~iA~~~~~s~e~l~~~~~~ 230 (247)
-+.||+..|+++|.|.+++..
T Consensus 5 r~diA~~lG~t~ETVSR~l~~ 25 (32)
T PF00325_consen 5 RQDIADYLGLTRETVSRILKK 25 (32)
T ss_dssp HHHHHHHHTS-HHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHH
Confidence 467899999999999998754
No 177
>TIGR00681 kdpC K+-transporting ATPase, C subunit. This chain has a single predicted transmembrane region near the amino end. It is part of a K+-transport ATPase that contains two other membrane-bound subunits, KdpA and KdpB, and a small subunit KdpF. KdpA is the K+-translocating subunit, KdpB the ATP-hydrolyzing subunit. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilize the complex [PubMed:9858692]. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolyzing (energy providing) subunit [PubMed:9858692].
Probab=38.12 E-value=44 Score=28.95 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=29.0
Q ss_pred chhHHHHHHHHHHccCCCHHHHHHHHHHHHH-HhhCC
Q 025866 203 PANIHNVLDYVASLLDMTKEELAELSYRNAI-RLFSY 238 (247)
Q Consensus 203 P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~-~~f~~ 238 (247)
|..-..=+..+|+.+|++.++|.+++.+|+. +.|++
T Consensus 133 p~aA~~Qv~RVA~argl~~~~v~~LI~~~t~~~~lG~ 169 (187)
T TIGR00681 133 PAAAQAQFPRVAKARNISPQQLQSLITKHTEGRFLGI 169 (187)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCCCCCc
Confidence 5555556668999999999999999999998 44554
No 178
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=38.11 E-value=2.2e+02 Score=26.36 Aligned_cols=59 Identities=25% Similarity=0.255 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHcCCceEEeecccH-------HHH----HHHHHhcCCCCCcEEEEeCCC-CHHHHHHHHHCCC
Q 025866 55 GVFRQQLELAKELKRPASIHCVRAF-------GDL----LEIMKSVGPFPDGVIIHSYLG-SAEMVPELSKLGA 116 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a~-------~~~----l~iLk~~~~~~~~~I~H~fsG-s~~~~~~~l~~G~ 116 (247)
+.....|+.|++.+-||+|-.-... ..+ ..+.++++ ..+++|.=-| +.+.+.+.++.||
T Consensus 29 E~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~---vPV~lHlDHg~~~~~~~~ai~~GF 99 (286)
T COG0191 29 ETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYG---VPVALHLDHGASFEDCKQAIRAGF 99 (286)
T ss_pred HHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCC---CCEEEECCCCCCHHHHHHHHhcCC
Confidence 6778889999999999999887632 222 24445555 3478887777 8899999999886
No 179
>PRK06886 hypothetical protein; Validated
Probab=37.95 E-value=2.4e+02 Score=26.29 Aligned_cols=90 Identities=11% Similarity=-0.022 Sum_probs=48.4
Q ss_pred ceeeecccccC---CCChhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHH-HHHHHHHcCCceEEeecc
Q 025866 2 DWVCFIFRFVQ---ERTPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQ-QLELAKELKRPASIHCVR 77 (247)
Q Consensus 2 ~~~g~hP~~~~---~~~~~~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~-qL~lA~~~~lpv~lH~~~ 77 (247)
+.+|=.|++.. ..+++.++.+.++..+.. +++|.+-.....+.....+.+.+ -++.. =.+..+..||..
T Consensus 144 dvvGGiP~~~~~~~~~~~e~l~~~~~lA~~~g------~~Id~Hlde~~~~~~~~le~l~~~~~~~G-l~grV~~sH~~~ 216 (329)
T PRK06886 144 DMIGGLPYRDELDYGRGLEAMDILLDTAKSLG------KMVHVHVDQFNTPKEKETEQLCDKTIEHG-MQGRVVAIHGIS 216 (329)
T ss_pred CEEeCccCCcCCCCCCCHHHHHHHHHHHHHcC------CCeEEeECCCCchhHHHHHHHHHHHHHcC-CCCCEEEEEecc
Confidence 34555587742 345778999999988754 23333321101111222222222 11211 134567789986
Q ss_pred cH-------HHHHHHHHhcCCCCCcEEEEeCC
Q 025866 78 AF-------GDLLEIMKSVGPFPDGVIIHSYL 102 (247)
Q Consensus 78 a~-------~~~l~iLk~~~~~~~~~I~H~fs 102 (247)
-. .+++++|++.+. .|+||-.
T Consensus 217 L~~~~~~~~~~~i~~La~agi----~Vv~~P~ 244 (329)
T PRK06886 217 IGAHSKEYRYRLYQKMREADM----MVIACPM 244 (329)
T ss_pred ccCcChhhHHHHHHHHHHcCC----eEEECch
Confidence 43 457888888864 4778854
No 180
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=37.89 E-value=1.5e+02 Score=26.27 Aligned_cols=57 Identities=12% Similarity=0.144 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHcCCceEEeeccc----HHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHC
Q 025866 56 VFRQQLELAKELKRPASIHCVRA----FGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKL 114 (247)
Q Consensus 56 vf~~qL~lA~~~~lpv~lH~~~a----~~~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~ 114 (247)
-|++.|+++...+..+.|..... .+.+++++++++....++++-+| +.+.++.+.+.
T Consensus 90 tL~evl~~~~~~~~~l~iEiK~~~~~~~~~v~~~l~~~~~~~~~v~v~SF--~~~~l~~~~~~ 150 (258)
T cd08573 90 TLEEAVKECLENNLRMIFDVKSNSSKLVDALKNLFKKYPGLYDKAIVCSF--NPIVIYKVRKA 150 (258)
T ss_pred CHHHHHHHHHhcCCEEEEEeCCCcHHHHHHHHHHHHHCCCccCCEEEEEC--CHHHHHHHHHh
Confidence 47788888888888899988754 34677888888623457899999 57777777664
No 181
>PRK13404 dihydropyrimidinase; Provisional
Probab=37.81 E-value=1.4e+02 Score=28.95 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHcCCceEEeeccc
Q 025866 55 GVFRQQLELAKELKRPASIHCVRA 78 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a 78 (247)
..+.+.++.|+++|++|.+|+.+.
T Consensus 166 ~~l~~~~~~a~~~g~~V~~Hae~~ 189 (477)
T PRK13404 166 RQILDVLAVARRHGAMVMVHAENH 189 (477)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCH
Confidence 568888899999999999999863
No 182
>PRK13997 potassium-transporting ATPase subunit C; Provisional
Probab=37.79 E-value=40 Score=29.30 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=29.0
Q ss_pred chhHHHHHHHHHHccCCCHHHHHHHHHHHHH-HhhCC
Q 025866 203 PANIHNVLDYVASLLDMTKEELAELSYRNAI-RLFSY 238 (247)
Q Consensus 203 P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~-~~f~~ 238 (247)
|..-..=+..+|+.+|++.++|.+++.+|+. +.|++
T Consensus 137 p~aA~~Qv~RVA~argls~~~v~~LV~~~t~~~~lG~ 173 (193)
T PRK13997 137 PKAASVQVERISKLTNIPKETLDQLIKDQTEGAALGL 173 (193)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHccCCCCCc
Confidence 5555556668999999999999999999998 44554
No 183
>PRK14002 potassium-transporting ATPase subunit C; Provisional
Probab=37.46 E-value=44 Score=28.92 Aligned_cols=36 Identities=19% Similarity=0.257 Sum_probs=28.8
Q ss_pred chhHHHHHHHHHHccCCCHHHHHHHHHHHHHH-hhCC
Q 025866 203 PANIHNVLDYVASLLDMTKEELAELSYRNAIR-LFSY 238 (247)
Q Consensus 203 P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~-~f~~ 238 (247)
|.+-..=+..+|+.+|++.++|.+++.+|+.. .|++
T Consensus 131 p~aA~~Qv~RVA~argl~~~~v~~LV~~~t~~~~lG~ 167 (186)
T PRK14002 131 PQAAYVQVKRVAKARGMSEEKVKQLVDQHVEKPLLGM 167 (186)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCCCCCc
Confidence 55555666689999999999999999999983 4444
No 184
>PRK13999 potassium-transporting ATPase subunit C; Provisional
Probab=37.34 E-value=44 Score=29.23 Aligned_cols=36 Identities=14% Similarity=0.128 Sum_probs=28.7
Q ss_pred chhHHHHHHHHHHccCCCHHHHHHHHHHHHHH-hhCC
Q 025866 203 PANIHNVLDYVASLLDMTKEELAELSYRNAIR-LFSY 238 (247)
Q Consensus 203 P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~-~f~~ 238 (247)
|.+-..=+..+|+.+|+++++|.+++.+|+.. .+++
T Consensus 144 p~aA~~Qv~RVA~argls~~~v~~LV~~~t~~~~lG~ 180 (201)
T PRK13999 144 PEAALFQVPRVAKARGLPEDRLRDLVAAQVEGRTLGL 180 (201)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCCCCCC
Confidence 55555556689999999999999999999983 4444
No 185
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=37.14 E-value=64 Score=30.53 Aligned_cols=44 Identities=18% Similarity=0.062 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEeecccHHHHHHHHHhcCC
Q 025866 48 IDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGP 91 (247)
Q Consensus 48 ~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~~~l~iLk~~~~ 91 (247)
..-+.|..+++..|.+|++.|.|+++=.+......-+++++.+.
T Consensus 245 ~~s~~q~~F~e~~L~~ake~~I~~vl~~P~V~~~~~~~~~~~~~ 288 (345)
T PF07611_consen 245 TFSETQFFFLEKFLKLAKENGIPVVLWWPKVSPPYEKLYKELKV 288 (345)
T ss_pred CCChhHHHHHHHHHHHHHHcCCcEEEEEeccCHHHHHHHHhhch
Confidence 34589999999999999999999999999999888888888753
No 186
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=37.12 E-value=2.1e+02 Score=24.62 Aligned_cols=58 Identities=19% Similarity=0.188 Sum_probs=34.4
Q ss_pred HHHHHHHhhcCCceEEEeecCCCCCCC-CCCCHHHHHHHHHHHHHHHHHcCCc-eEEeec
Q 025866 19 FSTLKEFFEITPAAAVGEIGLDKGSKG-REIDFMDQVGVFRQQLELAKELKRP-ASIHCV 76 (247)
Q Consensus 19 l~~l~~~l~~~~~~aIGEIGLD~~~~~-~~~~~~~Q~~vf~~qL~lA~~~~lp-v~lH~~ 76 (247)
.+.+.+.+....+...+-.+.-..... .....+.-.+.+++.+++|.++|.+ |++|+-
T Consensus 47 ~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~~~vv~~~g 106 (274)
T COG1082 47 LAELKELLADYGLEITSLAPFSNNLLSPDEEEREEALEELKRAIELAKELGAKVVVVHPG 106 (274)
T ss_pred HHHHHHHHHHcCcEEEeecccCCCcCCCchhhHHHHHHHHHHHHHHHHHcCCCeEEeecc
Confidence 778888887766544332333221111 1112234467778899999999966 666774
No 187
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=37.11 E-value=89 Score=28.17 Aligned_cols=87 Identities=18% Similarity=0.090 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEeecccHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHC-------CCeeeecc
Q 025866 50 FMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKL-------GAYFSFSG 122 (247)
Q Consensus 50 ~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~-------G~~~Si~~ 122 (247)
..++.++-+..++.+.+.+.-.++=.-+. +. .+.+. ..-+-|-..+.+.++++-+. |.--|.+|
T Consensus 89 p~~i~e~s~~v~~w~~~~~v~~ii~~~g~-~~---~~~~e-----~~~v~~va~~~~~~~~l~~~~~~~~~~G~I~G~~g 159 (244)
T COG1938 89 PAVIYEISNAVVEWAEENGVEEVISLGGM-PA---RLREE-----KPSVYGVATSEEKLEKLKDLGAEPLEEGTIVGPSG 159 (244)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEecCC-Cc---ccccC-----CCceEEEecchhhhhHHhhcCCCccccceeecccH
Confidence 35666777777777777664433322211 00 00000 01123333444546666555 43444445
Q ss_pred ccccccc-cCCCCCceEEecCCCC
Q 025866 123 FLMSMKA-QKVPSERILLETDAPD 145 (247)
Q Consensus 123 ~i~~~~~-~~iPldriLlETD~P~ 145 (247)
.++..-. +.+|--.||.||+..+
T Consensus 160 ~ll~e~~~r~i~a~~ll~et~~~~ 183 (244)
T COG1938 160 ALLNECLKRGIPALVLLAETFGDR 183 (244)
T ss_pred HHHHHHHHcCCCeEEEeccccCCC
Confidence 4443322 2388888999998865
No 188
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=36.85 E-value=45 Score=26.69 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHcCCceEEeecccH
Q 025866 51 MDQVGVFRQQLELAKELKRPASIHCVRAF 79 (247)
Q Consensus 51 ~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~ 79 (247)
+.+...|.+.++ +...||.+||+.+.
T Consensus 72 ~~~v~~f~~~~~---~~~~pvL~HC~sG~ 97 (135)
T TIGR01244 72 PDDVETFRAAIG---AAEGPVLAYCRSGT 97 (135)
T ss_pred HHHHHHHHHHHH---hCCCCEEEEcCCCh
Confidence 345666666665 45678888887665
No 189
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=36.56 E-value=82 Score=29.84 Aligned_cols=55 Identities=22% Similarity=0.290 Sum_probs=33.9
Q ss_pred HHHHHHHHHHc-CCceEEeecccH-HHHHHHHHhcCCCCCcEEEEeCCC-CHHHHHHHHHCCC
Q 025866 57 FRQQLELAKEL-KRPASIHCVRAF-GDLLEIMKSVGPFPDGVIIHSYLG-SAEMVPELSKLGA 116 (247)
Q Consensus 57 f~~qL~lA~~~-~lpv~lH~~~a~-~~~l~iLk~~~~~~~~~I~H~fsG-s~~~~~~~l~~G~ 116 (247)
|++.-+|++.. +.||+||-=.+. .+++..+-.+|.. +|.--| +.+.++++++.|+
T Consensus 214 fdrL~eI~~~v~~vPLVLHGgSG~~~~~~~~~~~~g~~-----~~~~~G~~~e~i~~ai~~GI 271 (347)
T PRK09196 214 IDRIKEIHARLPNTHLVMHGSSSVPQELLDIINEYGGD-----MPETYGVPVEEIQEGIKHGV 271 (347)
T ss_pred HHHHHHHHhcCCCCCEEEeCCCCCCHHHHHHHHHhcCC-----ccccCCCCHHHHHHHHHCCC
Confidence 33444566666 677777766554 4666666666532 333333 6678888888874
No 190
>PRK13996 potassium-transporting ATPase subunit C; Provisional
Probab=36.52 E-value=46 Score=29.06 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=29.0
Q ss_pred chhHHHHHHHHHHccCCCHHHHHHHHHHHHH-HhhCC
Q 025866 203 PANIHNVLDYVASLLDMTKEELAELSYRNAI-RLFSY 238 (247)
Q Consensus 203 P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~-~~f~~ 238 (247)
|..-..=+..+|+.+|++.++|.+++.+|+. +.|++
T Consensus 141 p~aA~~Qv~RVA~argls~~~v~~LV~~~t~~~~lG~ 177 (197)
T PRK13996 141 VAAAKYQVDRIAKNNNMSVKDVEDIIDKYTSGKLFGV 177 (197)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCCCcCc
Confidence 5555566678999999999999999999998 34544
No 191
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=36.45 E-value=1.5e+02 Score=27.98 Aligned_cols=65 Identities=20% Similarity=0.205 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHcCCceEEeecc-cH---------------------HHHHHHH----HhcCCCCCcEEE---EeCCCCH
Q 025866 55 GVFRQQLELAKELKRPASIHCVR-AF---------------------GDLLEIM----KSVGPFPDGVII---HSYLGSA 105 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~-a~---------------------~~~l~iL----k~~~~~~~~~I~---H~fsGs~ 105 (247)
+..+..++.|.+.+.||+|-.-. .. ..+..++ ++++. .+++ ||..-+.
T Consensus 24 e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~V---PV~lHLDH~~~~~~ 100 (340)
T cd00453 24 DSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGV---PVILHTDHCAKKLL 100 (340)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCcchHHHhCCCcccccccchhhhhhHHHHHHHHHHHHHHCCC---CEEEEcCCCCCCCH
Confidence 56778899999999999986654 11 1222333 33432 2555 5543367
Q ss_pred HHHHHHHHCC-Ceeeecc
Q 025866 106 EMVPELSKLG-AYFSFSG 122 (247)
Q Consensus 106 ~~~~~~l~~G-~~~Si~~ 122 (247)
+.++++++.| +|++.++
T Consensus 101 e~i~~ai~~G~~~~~~~~ 118 (340)
T cd00453 101 PWIDGLLDAGEKHFAATG 118 (340)
T ss_pred HHHHHHHHcCCccccccC
Confidence 8999999999 5555544
No 192
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=36.41 E-value=1.5e+02 Score=28.05 Aligned_cols=24 Identities=25% Similarity=0.176 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHcCCceEEeecc
Q 025866 54 VGVFRQQLELAKELKRPASIHCVR 77 (247)
Q Consensus 54 ~~vf~~qL~lA~~~~lpv~lH~~~ 77 (247)
.+.+.+.++.|++++++|.+|+..
T Consensus 161 ~~~l~~~~~~a~~~g~~v~~H~E~ 184 (447)
T cd01314 161 DEELLDVLKRAKELGALVMVHAEN 184 (447)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCC
Confidence 357888889999999999999853
No 193
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=35.92 E-value=1.9e+02 Score=27.23 Aligned_cols=57 Identities=12% Similarity=0.035 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHcCCceEEeecccHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHH
Q 025866 55 GVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSK 113 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a~~~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~ 113 (247)
..+.+.++-.++.+.|+++|..+....+++.+.+.+.. .++.+-.+.+...+++.+.
T Consensus 255 P~~k~i~~~i~~~g~~~ilh~cG~~~~~l~~l~~~g~~--~v~~~~~~~dl~~ak~~~g 311 (378)
T cd03308 255 PSFKKVVEGLAARGQRIFLFFEGDWERYLEYLQELPKG--KTVGLFEYGDPKKVKEKLG 311 (378)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcHHHHHHHHhcCCC--cEEEcCCCCCHHHHHHHhC
Confidence 34466666666678999999999999999999998642 2344433456666666554
No 194
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=35.57 E-value=2e+02 Score=27.39 Aligned_cols=39 Identities=18% Similarity=0.333 Sum_probs=29.2
Q ss_pred HHHHHHcCC----ceEEeecccHHHHHHHHHhcCCCCCcEEEEeCCC
Q 025866 61 LELAKELKR----PASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLG 103 (247)
Q Consensus 61 L~lA~~~~l----pv~lH~~~a~~~~l~iLk~~~~~~~~~I~H~fsG 103 (247)
++...++|+ .+..||....++.++++++.+. .|.||-+.
T Consensus 250 ~~~l~~~G~l~~~~~l~H~~~l~~~~~~~l~~~g~----~v~~~P~s 292 (429)
T cd01303 250 LDVYDKYGLLTEKTVLAHCVHLSEEEFNLLKERGA----SVAHCPTS 292 (429)
T ss_pred HHHHHHCCCCCCCcEEEeCCCCCHHHHHHHHHcCC----EEEECccc
Confidence 455556554 5789999999999999999863 57788654
No 195
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=35.39 E-value=1.9e+02 Score=24.07 Aligned_cols=105 Identities=16% Similarity=0.176 Sum_probs=56.5
Q ss_pred HHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecccHHHHHHHHHhcCCCCCcEE
Q 025866 18 WFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVI 97 (247)
Q Consensus 18 ~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~~~l~iLk~~~~~~~~~I 97 (247)
..+.++.++..+ +.+| ++ |... .+.....+..++..+++..++.++++| +-++++.+.|. ..++
T Consensus 23 ~~~~~~~~~~~g-v~~v-~l--r~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~a~~~ga--d~vh 86 (212)
T PRK00043 23 LLEVVEAALEGG-VTLV-QL--REKG----LDTRERLELARALKELCRRYGVPLIVN------DRVDLALAVGA--DGVH 86 (212)
T ss_pred HHHHHHHHHhcC-CCEE-EE--eCCC----CCHHHHHHHHHHHHHHHHHhCCeEEEe------ChHHHHHHcCC--CEEe
Confidence 456666666543 3333 22 2111 122333445556667888899999997 23566666664 2344
Q ss_pred EEeCCCCHHHHHHHHHCCCeeeeccccccc---cccCCCCCceEE
Q 025866 98 IHSYLGSAEMVPELSKLGAYFSFSGFLMSM---KAQKVPSERILL 139 (247)
Q Consensus 98 ~H~fsGs~~~~~~~l~~G~~~Si~~~i~~~---~~~~iPldriLl 139 (247)
+|...-....++.+...|..+|++-. +.. .+.+.-.|.+.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~g~~~~-t~~e~~~a~~~gaD~v~~ 130 (212)
T PRK00043 87 LGQDDLPVADARALLGPDAIIGLSTH-TLEEAAAALAAGADYVGV 130 (212)
T ss_pred cCcccCCHHHHHHHcCCCCEEEEeCC-CHHHHHHHhHcCCCEEEE
Confidence 45443344566666667887776532 111 122345576655
No 196
>KOG3968 consensus Atrazine chlorohydrolase/guanine deaminase [Nucleotide transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.97 E-value=1.6e+02 Score=28.67 Aligned_cols=70 Identities=24% Similarity=0.190 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHcCCceEEeecccHHHHH---HHHHh----------cCCC-CCcEEEEeCCCCHHHHHHHHHCCCeee
Q 025866 54 VGVFRQQLELAKELKRPASIHCVRAFGDLL---EIMKS----------VGPF-PDGVIIHSYLGSAEMVPELSKLGAYFS 119 (247)
Q Consensus 54 ~~vf~~qL~lA~~~~lpv~lH~~~a~~~~l---~iLk~----------~~~~-~~~~I~H~fsGs~~~~~~~l~~G~~~S 119 (247)
+.+|+.--+||+..++|+.+|.-....++- +...+ ++.. +..++-|+---+.+.++-+-++|+-+|
T Consensus 219 k~v~~~l~~lak~~~l~~q~hIsen~~EI~~~~~ff~~~~~y~~~yd~~~lL~~ktvlaH~~hl~d~ei~~l~k~g~svs 298 (439)
T KOG3968|consen 219 KGVFEELSKLAKYHNLHIQIHISENGKEIEAVKNFFPEKLSYTDVYDKGGLLTEKTVLAHLEHLSDEEIELLAKRGCSVS 298 (439)
T ss_pred chhHHHHHHHHHhhhhhhhhhhhhcHHHHHHHHHhhhhcccchHHHHHhcccchHhHhhhheecCchhHHHHHhcCCceE
Confidence 478888889999999999999987655542 22222 2222 234555887778888888888898777
Q ss_pred eccc
Q 025866 120 FSGF 123 (247)
Q Consensus 120 i~~~ 123 (247)
.=|.
T Consensus 299 hCP~ 302 (439)
T KOG3968|consen 299 HCPT 302 (439)
T ss_pred ECCc
Confidence 7553
No 197
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=34.96 E-value=1.1e+02 Score=27.00 Aligned_cols=49 Identities=20% Similarity=0.206 Sum_probs=36.0
Q ss_pred HHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecc
Q 025866 19 FSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVR 77 (247)
Q Consensus 19 l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~ 77 (247)
.+++.+++....+++|| +|+-. ..+.+.+...++.++++++||++--+.
T Consensus 40 ~~e~~~~~~~~~al~ik-~G~l~---------~~~~~~i~~~~~~~~~~~~pvVlDPV~ 88 (249)
T TIGR00694 40 EEEVAELAKIAGALVIN-IGTLD---------KESIEAMIAAGKSANELGVPVVLDPVG 88 (249)
T ss_pred HHHHHHHHHHcCceEEe-CCCCC---------HHHHHHHHHHHHHHHhcCCCEEEcccc
Confidence 45566666666678887 88762 235677777788888999999998775
No 198
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=34.86 E-value=1.8e+02 Score=26.11 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHcCCceEEeecccHHHHHHHHHhcCCCCCcEEEEeCCC-CHHHHHHHH
Q 025866 54 VGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLG-SAEMVPELS 112 (247)
Q Consensus 54 ~~vf~~qL~lA~~~~lpv~lH~~~a~~~~l~iLk~~~~~~~~~I~H~fsG-s~~~~~~~l 112 (247)
...+++.++-.++.+.|+++|+-+....+++.+.+.+. . ++|+=.. +...+++.+
T Consensus 207 ~p~~k~i~~~i~~~g~~~~lH~cG~~~~~~~~l~~~~~---d-~~~~d~~~dl~~~~~~~ 262 (330)
T cd03465 207 LPYLKKVFDAIKALGGPVIHHNCGDTAPILELMADLGA---D-VFSIDVTVDLAEAKKKV 262 (330)
T ss_pred hHHHHHHHHHHHHcCCceEEEECCCchhHHHHHHHhCC---C-eEeecccCCHHHHHHHh
Confidence 45667888888888999999999998899999999874 1 3443222 566666654
No 199
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=34.78 E-value=1.5e+02 Score=28.16 Aligned_cols=60 Identities=22% Similarity=0.295 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHcCCceEEeecccH------HHHHHHHH----hcCCCCCcEEEEeCCC-CHHHHHHHHHCCC
Q 025866 55 GVFRQQLELAKELKRPASIHCVRAF------GDLLEIMK----SVGPFPDGVIIHSYLG-SAEMVPELSKLGA 116 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a~------~~~l~iLk----~~~~~~~~~I~H~fsG-s~~~~~~~l~~G~ 116 (247)
+.++..++.|.+.+.||+|-.-... ..+..+++ +...-| +.+|-=-| +.+.++++++.||
T Consensus 27 e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VP--ValHLDHg~~~e~i~~Ai~~GF 97 (347)
T TIGR01521 27 EQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPHIP--VVMHQDHGNSPATCQRAIQLGF 97 (347)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCCCc--EEEECCCCCCHHHHHHHHHcCC
Confidence 6788999999999999998775432 22223333 231122 45543322 7899999999986
No 200
>PF02007 MtrH: Tetrahydromethanopterin S-methyltransferase MtrH subunit; InterPro: IPR023467 In archaea the enzyme tetrahydromethanopterin S-methyltransferase is composed of eight subunits, MtrA-H. The enzyme is a membrane- associated enzyme complex which catalyzes an energy-conserving, sodium-ion-translocating step in methanogenesis from hydrogen and carbon dioxide []. Subunit MtrH catalyzes the methylation reaction and was shown to exhibit methyltetrahydromethanopterin:cob(I)alamin methyltransferase activity []. CH3-H4MPT + cob(I)alamin --> H4MPT + CH3-cob(III)alamin (H4MPT = tetrahydromethanopterin); GO: 0008168 methyltransferase activity, 0006730 one-carbon metabolic process
Probab=34.77 E-value=68 Score=29.73 Aligned_cols=94 Identities=18% Similarity=0.255 Sum_probs=55.2
Q ss_pred CCceEEEeecCCCCC------CCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecccHHHHH----HHHHhcCCCCCcEEE
Q 025866 29 TPAAAVGEIGLDKGS------KGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLL----EIMKSVGPFPDGVII 98 (247)
Q Consensus 29 ~~~~aIGEIGLD~~~------~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~~~l----~iLk~~~~~~~~~I~ 98 (247)
.+.+.+|-|=.+.+. ++ .-+++.-+++.++|.+++.++|.|.++|......+.+ +...+... ..+++
T Consensus 20 ~PtvL~GSIFY~gHkIV~D~~~G-~FDk~~Ae~Li~~q~elsd~TGnp~~~~I~~~s~EA~~kYidFv~~i~d--~Pfli 96 (296)
T PF02007_consen 20 YPTVLIGSIFYNGHKIVEDEKKG-IFDKEAAEALINRQEELSDETGNPCIVDIVAESPEAMEKYIDFVAEITD--SPFLI 96 (296)
T ss_pred CCceEEEeeeecCceeeeccCCC-ccCHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHhhcCC--CCeEe
Confidence 455666665333221 11 2368899999999999999999999999998765533 33333322 22555
Q ss_pred EeCCCCHHHH--HHHHHCC-----Ceeeeccccc
Q 025866 99 HSYLGSAEMV--PELSKLG-----AYFSFSGFLM 125 (247)
Q Consensus 99 H~fsGs~~~~--~~~l~~G-----~~~Si~~~i~ 125 (247)
-+-++....+ +..-+.| +|=||+....
T Consensus 97 DS~~~~~R~~a~~yv~E~Gl~dR~IYNSIn~~~~ 130 (296)
T PF02007_consen 97 DSSSPEVRIAAAKYVTEIGLADRAIYNSINMSIE 130 (296)
T ss_pred cCCCHHHHHHHHHHHhhhchhhhhhhhcCCCCCC
Confidence 5543322211 1112223 5777776543
No 201
>PRK13207 ureC urease subunit alpha; Reviewed
Probab=34.63 E-value=89 Score=31.56 Aligned_cols=87 Identities=18% Similarity=0.213 Sum_probs=50.2
Q ss_pred HHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecccHH-HHHH-HHHhcCCCCCcE
Q 025866 19 FSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFG-DLLE-IMKSVGPFPDGV 96 (247)
Q Consensus 19 l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~-~~l~-iLk~~~~~~~~~ 96 (247)
++.+.+++..+ +.+|. +-.|+.. --..+.+.|+.|.++|+||.+|++..-+ -..+ -++.-. ..
T Consensus 203 ~~~L~e~i~aG-A~gfK-i~~d~g~---------t~~~l~~aL~~A~~~gv~V~iHa~tlne~G~~e~t~~a~~----g~ 267 (568)
T PRK13207 203 PEALEEQIEAG-AIGLK-LHEDWGA---------TPAAIDNCLSVADEYDVQVAIHTDTLNESGFVEDTIAAFK----GR 267 (568)
T ss_pred HHHHHHHHHcC-CCEEe-ecCCCCC---------CHHHHHHHHHHHHHhCCEEEEeCCCcccchHHHHHHHhcC----CC
Confidence 55666665433 44444 2234321 1268888999999999999999985321 1122 233321 23
Q ss_pred EEEeCC-------CCHHHHHHHHHCCCeeee
Q 025866 97 IIHSYL-------GSAEMVPELSKLGAYFSF 120 (247)
Q Consensus 97 I~H~fs-------Gs~~~~~~~l~~G~~~Si 120 (247)
.+|-|- -.++.++.+-..|++.|-
T Consensus 268 ~iH~~H~egaggghapdii~~~~~~~v~p~s 298 (568)
T PRK13207 268 TIHTFHTEGAGGGHAPDIIKVAGEPNVLPSS 298 (568)
T ss_pred EEEEEeecCCCcCCchHHHHHhhcCCCccCC
Confidence 556664 235666666666887664
No 202
>PRK07572 cytosine deaminase; Validated
Probab=34.52 E-value=3.1e+02 Score=25.96 Aligned_cols=88 Identities=17% Similarity=0.066 Sum_probs=45.1
Q ss_pred ceeeecccccCCC--ChhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCC---ceEEeec
Q 025866 2 DWVCFIFRFVQER--TPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKR---PASIHCV 76 (247)
Q Consensus 2 ~~~g~hP~~~~~~--~~~~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~l---pv~lH~~ 76 (247)
+++|.-|+..... +.+.++.+.++..+..+.. -+=+|... . + .....++..+...++|+ .+..|+.
T Consensus 174 d~iGg~p~~~~~~~~~~e~l~~~~~~A~~~g~~v--~~H~~e~~----~--~-~~~~~~~~~~~~~~~G~~~~v~~~H~~ 244 (426)
T PRK07572 174 DVVGGIPHFERTMADGAESVRLLCEIAAERGLRV--DMHCDESD----D--P-LSRHIETLAAETQRLGLQGRVAGSHLT 244 (426)
T ss_pred CEEeCCCCCccccchHHHHHHHHHHHHHHcCCCe--EEEECCCC----C--h-hHHHHHHHHHHHHHhCCCCCEEEEccc
Confidence 4566556554432 2366777777776643211 01111111 0 1 11222333444445444 4558986
Q ss_pred cc-------HHHHHHHHHhcCCCCCcEEEEeCC
Q 025866 77 RA-------FGDLLEIMKSVGPFPDGVIIHSYL 102 (247)
Q Consensus 77 ~a-------~~~~l~iLk~~~~~~~~~I~H~fs 102 (247)
.. ..+.+++|++.+. .|+||..
T Consensus 245 ~l~~~~~~~~~~~~~~la~~g~----~vv~~P~ 273 (426)
T PRK07572 245 SMHSMDNYYVSKLIPLMAEAGV----NAIANPL 273 (426)
T ss_pred hhhcCCHHHHHHHHHHHHHcCC----eEEECch
Confidence 52 3478899999863 5789863
No 203
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=34.24 E-value=2e+02 Score=23.87 Aligned_cols=28 Identities=18% Similarity=0.396 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHc----CCceEEeecccHH
Q 025866 53 QVGVFRQQLELAKEL----KRPASIHCVRAFG 80 (247)
Q Consensus 53 Q~~vf~~qL~lA~~~----~lpv~lH~~~a~~ 80 (247)
+..-|-.+++-+.+. +.||.|||..+.+
T Consensus 79 ~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGig 110 (166)
T PTZ00242 79 VIDNWLRLLDQEFAKQSTPPETIAVHCVAGLG 110 (166)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEECCCCCC
Confidence 344444444444433 7777777776543
No 204
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=33.75 E-value=1.6e+02 Score=26.98 Aligned_cols=59 Identities=17% Similarity=0.146 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHcCCceEEeecccH------HHHHH----HHHhcCCCCCcEEEEeCCC-CHHHHHHHHHCCC
Q 025866 55 GVFRQQLELAKELKRPASIHCVRAF------GDLLE----IMKSVGPFPDGVIIHSYLG-SAEMVPELSKLGA 116 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a~------~~~l~----iLk~~~~~~~~~I~H~fsG-s~~~~~~~l~~G~ 116 (247)
+..+..++.|++.+.||+|-.-... +.+.. +.++.+. .+.+|-=-| +.+.++++++.||
T Consensus 29 e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~V---PValHLDH~~~~e~i~~ai~~Gf 98 (284)
T PRK12857 29 EIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKASV---PVALHLDHGTDFEQVMKCIRNGF 98 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCC---CEEEECCCCCCHHHHHHHHHcCC
Confidence 6788899999999999998765432 22323 3333332 255543333 6889999999885
No 205
>PF10543 ORF6N: ORF6N domain; InterPro: IPR018873 This entry represents an N-terminal DNA-binding domain found in a wide range of proteins from bacterial and eukaryotic DNA viruses and there bacterial homologues, they include the poxvirus D6R/N1R and baculoviral Bro protein families. The KilA-N domain is considered to be homologous to the fungal DNA-binding APSES domain. Both the KilA-N and APSES domains share a common fold with the nucleic acid-binding modules of the LAGLIDADG nucleases and the amino-terminal domains of the tRNA endonuclease []. This entry represents the amino-terminal domain of the Enterobacteria phage P22 antirepressor ((P03037 from SWISSPROT) []. It is found associated with IPR018876 from INTERPRO.
Probab=33.68 E-value=45 Score=24.88 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=25.3
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHhh
Q 025866 209 VLDYVASLLDMTKEELAELSYRNAIRLF 236 (247)
Q Consensus 209 v~~~iA~~~~~s~e~l~~~~~~N~~~~f 236 (247)
+.+.||++.|++...+.+.+.+|-.+|=
T Consensus 14 t~~~lA~~yg~~~~~i~~~~~rN~~rF~ 41 (88)
T PF10543_consen 14 TDEDLAELYGVETKTINRNFKRNKDRFI 41 (88)
T ss_pred EHHHHHHHhCcCHHHHHHHHHHHHHhCC
Confidence 4568999999999999999999999984
No 206
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=33.55 E-value=1.7e+02 Score=26.82 Aligned_cols=63 Identities=14% Similarity=0.160 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHcCCceEEeecccH------HHHHHHH----HhcCCCCCcEEEEeCCC-CHHHHHHHHHCCCeeeec
Q 025866 55 GVFRQQLELAKELKRPASIHCVRAF------GDLLEIM----KSVGPFPDGVIIHSYLG-SAEMVPELSKLGAYFSFS 121 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a~------~~~l~iL----k~~~~~~~~~I~H~fsG-s~~~~~~~l~~G~~~Si~ 121 (247)
+..+..++.|.+.+.||+|-.-... +.+..++ ++.+. .+.+|-=-| +.+.++++++.||- |+-
T Consensus 29 e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~V---PValHLDH~~~~e~i~~ai~~Gft-SVM 102 (284)
T PRK12737 29 ETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYNI---PLALHLDHHEDLDDIKKKVRAGIR-SVM 102 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCC---CEEEECCCCCCHHHHHHHHHcCCC-eEE
Confidence 7788999999999999998766432 2233333 33332 355654433 57999999999964 443
No 207
>PRK07369 dihydroorotase; Provisional
Probab=33.52 E-value=1.6e+02 Score=28.15 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHcCCceEEeecc
Q 025866 55 GVFRQQLELAKELKRPASIHCVR 77 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~ 77 (247)
..+.+.++.++++++++++|+.+
T Consensus 162 ~~l~~~~~~~~~~~~~v~~H~Ed 184 (418)
T PRK07369 162 ALLRRLLEYLKPLGKPVALWPCD 184 (418)
T ss_pred HHHHHHHHHHHhcCCeEEEecCC
Confidence 36777888899999999999985
No 208
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=33.26 E-value=1.1e+02 Score=28.38 Aligned_cols=51 Identities=22% Similarity=0.145 Sum_probs=31.4
Q ss_pred HHHHHcCCceEEeecccH-HHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCC
Q 025866 62 ELAKELKRPASIHCVRAF-GDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGA 116 (247)
Q Consensus 62 ~lA~~~~lpv~lH~~~a~-~~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~G~ 116 (247)
++++..+.||+||-=.+. +++++.+.++|.. +=-.+.-+.+.++++++.|+
T Consensus 198 ~I~~~~~iPLVLHGgSGip~e~~~~~~~~g~~----~~~~~g~~~e~~~kai~~GI 249 (307)
T PRK05835 198 EVKRLTNIPLVLHGASAIPDDVRKSYLDAGGD----LKGSKGVPFEFLQESVKGGI 249 (307)
T ss_pred HHHHHhCCCEEEeCCCCCchHHhhhhhhhccc----cccccCCCHHHHHHHHHcCc
Confidence 356666777777766553 4567777776532 11333335677888888774
No 209
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=32.82 E-value=2.7e+02 Score=27.03 Aligned_cols=147 Identities=18% Similarity=0.231 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCceEEeecccHHHHHHHHHhcCCC--C--CcEEEEeCCCCHHHHHHHHHCCCeeeecccc
Q 025866 49 DFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPF--P--DGVIIHSYLGSAEMVPELSKLGAYFSFSGFL 124 (247)
Q Consensus 49 ~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~~~l~iLk~~~~~--~--~~~I~H~fsGs~~~~~~~l~~G~~~Si~~~i 124 (247)
+.........+-+++|+..+.++.+=-. +..+.+++++..+.. + ..+..|++.-+.+.... +|-++=+++.+
T Consensus 204 p~~aE~~~iar~~~la~~~g~~vhi~Hi-St~~sv~li~~ak~~g~~vt~EvtphHL~l~~~~~~~---~~~~~k~nPPL 279 (430)
T COG0044 204 PPIAEASAIARDLELARATGARVHICHI-STKESVELIRAAKAEGIRVTAEVTPHHLLLDEEDIED---LGTLAKVNPPL 279 (430)
T ss_pred ChHHHHHHHHHHHHHHHHhCCcEEEEEc-CCHHHHHHHHHHhhcCCceEEeecchheEccHhHhhc---cCcceEECCCC
Confidence 4477788899999999999966543222 234445555443221 1 23567888777655444 77777777755
Q ss_pred ccccccC--------CCCCceEEecC-CCCCCCchhhccccccCCCCCCcccccccccCCCCCCCCCCcccccCCCCCCC
Q 025866 125 MSMKAQK--------VPSERILLETD-APDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTL 195 (247)
Q Consensus 125 ~~~~~~~--------iPldriLlETD-~P~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 195 (247)
.....++ =..| ++=|| +|...-...+ + ....
T Consensus 280 R~~~dr~aL~~~l~~G~ID--~iasDHaPht~eeK~~--------------------~------------------f~~a 319 (430)
T COG0044 280 RDEEDREALWEALKDGVID--VIASDHAPHTLEEKRL--------------------P------------------FEEA 319 (430)
T ss_pred CCHHHHHHHHHHHhCCCCc--EEEcCCCCCCHHHhcc--------------------c------------------hhhC
Confidence 3322111 1123 23343 3332110000 0 0001
Q ss_pred CCcccCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCCC
Q 025866 196 PKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEG 240 (247)
Q Consensus 196 ~~~~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~~ 240 (247)
+.+-..-=..++..+. +..-..+|.+++.+.+..|.-++|++..
T Consensus 320 p~G~~glE~~lpl~l~-lv~~g~lsl~~~v~~~S~nPA~ifgl~~ 363 (430)
T COG0044 320 PSGIPGLETALPLLLT-LVKKGRLSLERLVELLSTNPARIFGLPP 363 (430)
T ss_pred CCCCccHHHHHHHHHH-HHHcCCcCHHHHHHHHhhCHHHHhCCCC
Confidence 1113333345677676 6666779999999999999999999974
No 210
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=32.70 E-value=2.7e+02 Score=25.88 Aligned_cols=104 Identities=14% Similarity=0.164 Sum_probs=65.7
Q ss_pred eeeecccccCCCChhHHHHHHHHhhcCCceEEEeecCCCCCCC--CCCCHHHHHHHHHHHHHHHHHcCCceEEeeccc--
Q 025866 3 WVCFIFRFVQERTPNWFSTLKEFFEITPAAAVGEIGLDKGSKG--REIDFMDQVGVFRQQLELAKELKRPASIHCVRA-- 78 (247)
Q Consensus 3 ~~g~hP~~~~~~~~~~l~~l~~~l~~~~~~aIGEIGLD~~~~~--~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a-- 78 (247)
.+|.-|-+++ ++.++.|.++.++. -+.| |.||.-.... ...++.+--..|.....-++++|+-|.-|.-.+
T Consensus 119 sIgTRPDClp---d~VldlL~e~~~r~-~vWv-ELGLQT~h~~Tlk~iNRgHd~~~y~dav~r~rkrgIkvc~HiI~GLP 193 (312)
T COG1242 119 SIGTRPDCLP---DDVLDLLAEYNKRY-EVWV-ELGLQTAHDKTLKRINRGHDFACYVDAVKRLRKRGIKVCTHLINGLP 193 (312)
T ss_pred eecCCCCCCc---HHHHHHHHHHhhhe-EEEE-EeccchhhHHHHHHHhcccchHHHHHHHHHHHHcCCeEEEEEeeCCC
Confidence 3566777774 56788999988773 3444 9999876321 012334556778888888999999999998864
Q ss_pred ---HHHHHH---HHHhcCCCCCcE-EEEeCCCCHHHHHHHH
Q 025866 79 ---FGDLLE---IMKSVGPFPDGV-IIHSYLGSAEMVPELS 112 (247)
Q Consensus 79 ---~~~~l~---iLk~~~~~~~~~-I~H~fsGs~~~~~~~l 112 (247)
.+++++ ++...+....+. .+|--.|+. .++.+.
T Consensus 194 gE~~~~mleTak~v~~~~v~GIKlH~LhvvkgT~-m~k~Y~ 233 (312)
T COG1242 194 GETRDEMLETAKIVAELGVDGIKLHPLHVVKGTP-MEKMYE 233 (312)
T ss_pred CCCHHHHHHHHHHHHhcCCceEEEEEEEEecCCh-HHHHHH
Confidence 445554 444444322222 347777763 334444
No 211
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=32.67 E-value=3.4e+02 Score=23.79 Aligned_cols=61 Identities=10% Similarity=0.062 Sum_probs=36.2
Q ss_pred CChhHHHHHHHHhhcCCc--eEEEeecCC-CCCCCCC--CCHHHHHHHHHHHHHHHHHcCCceE-Eee
Q 025866 14 RTPNWFSTLKEFFEITPA--AAVGEIGLD-KGSKGRE--IDFMDQVGVFRQQLELAKELKRPAS-IHC 75 (247)
Q Consensus 14 ~~~~~l~~l~~~l~~~~~--~aIGEIGLD-~~~~~~~--~~~~~Q~~vf~~qL~lA~~~~lpv~-lH~ 75 (247)
.+...++.+.+.+++..+ ++++ +|.. .+..... ..++...+.+++.+++|+++|.+++ ++.
T Consensus 49 ~~~~~~~~~~~~l~~~gl~i~~~~-~~~~~~~~l~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~ 115 (279)
T TIGR00542 49 WSREQRLALVNAIIETGVRIPSMC-LSAHRRFPLGSKDKAVRQQGLEIMEKAIQLARDLGIRTIQLAG 115 (279)
T ss_pred CCHHHHHHHHHHHHHcCCCceeee-cCCCccCcCCCcCHHHHHHHHHHHHHHHHHHHHhCCCEEEecC
Confidence 356778888888887543 3332 1211 1111111 1233445689999999999999976 554
No 212
>TIGR02022 hutF formiminoglutamate deiminase. In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate.
Probab=32.48 E-value=4.4e+02 Score=25.25 Aligned_cols=58 Identities=12% Similarity=0.090 Sum_probs=39.0
Q ss_pred HHHHHHcCCc----eEEeecccHHHHHHHHHhcCCCCCcEEEEeCCCCH------HHHHHHHHCCCeeeecc
Q 025866 61 LELAKELKRP----ASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSA------EMVPELSKLGAYFSFSG 122 (247)
Q Consensus 61 L~lA~~~~lp----v~lH~~~a~~~~l~iLk~~~~~~~~~I~H~fsGs~------~~~~~~l~~G~~~Si~~ 122 (247)
++...++++- +..||....++-+++|++.+. .+.||-+.+. .-++++++.|+-++++-
T Consensus 254 v~~l~~~g~l~~~~~~~H~~~l~~~d~~~la~~g~----~v~~~P~sn~~lg~g~~pi~~l~~~Gv~v~lGT 321 (455)
T TIGR02022 254 VEWLLDHGPVDARWCLVHATHLTDEETALLARSGA----VAGLCPTTEANLGDGIFPAVDFVAAGGRFGIGS 321 (455)
T ss_pred HHHHHHcCCCCCCEEEEEeecCCHHHHHHHHHcCC----eEEEChhhhccccCCCCCHHHHHHCCCeEEEEC
Confidence 3444455433 789999998888999999864 5678864321 22466777777777754
No 213
>cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=32.45 E-value=2e+02 Score=25.03 Aligned_cols=56 Identities=11% Similarity=0.154 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHcCCceEEeeccc---------HHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHC
Q 025866 56 VFRQQLELAKELKRPASIHCVRA---------FGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKL 114 (247)
Q Consensus 56 vf~~qL~lA~~~~lpv~lH~~~a---------~~~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~ 114 (247)
-|++.|++++..+..+.|-.... ...+++++++++.. .+++|.+| +.+.++.+.+.
T Consensus 83 tL~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~~~v~~~i~~~~~~-~~v~~~Sf--~~~~l~~~~~~ 147 (235)
T cd08565 83 TLEEVLALFAPSGLELHVEIKTDADGTPYPGAAALAAATLRRHGLL-ERSVLTSF--DPAVLTEVRKH 147 (235)
T ss_pred CHHHHHHHhhccCcEEEEEECCCCCCCccHHHHHHHHHHHHhCCCc-CCEEEEEC--CHHHHHHHHhC
Confidence 36777777777777788776632 24577888888753 47899999 57788877765
No 214
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=32.43 E-value=2.1e+02 Score=26.27 Aligned_cols=59 Identities=20% Similarity=0.197 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHcCCceEEeeccc------HHHHHHHH----HhcCCCCCcEEEEeCCC-CHHHHHHHHHCCC
Q 025866 55 GVFRQQLELAKELKRPASIHCVRA------FGDLLEIM----KSVGPFPDGVIIHSYLG-SAEMVPELSKLGA 116 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a------~~~~l~iL----k~~~~~~~~~I~H~fsG-s~~~~~~~l~~G~ 116 (247)
+..+..++.|++.+-||+|-.-.. .+.+..++ +++.. .+.+|-=-| +.+.++++++.||
T Consensus 29 e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~V---PV~lHLDHg~~~e~i~~Ai~~Gf 98 (284)
T PRK09195 29 ETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHH---PLALHLDHHEKFDDIAQKVRSGV 98 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCC---CEEEECCCCCCHHHHHHHHHcCC
Confidence 778899999999999999876542 12333333 34432 255544333 7899999999985
No 215
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=32.39 E-value=1.6e+02 Score=27.83 Aligned_cols=59 Identities=15% Similarity=0.114 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHcCCceEEeecc---------------cHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHC
Q 025866 54 VGVFRQQLELAKELKRPASIHCVR---------------AFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKL 114 (247)
Q Consensus 54 ~~vf~~qL~lA~~~~lpv~lH~~~---------------a~~~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~ 114 (247)
.--|++.|++++.++..+.+=... ....+++++++++....++++.|| +.+.++.+.+.
T Consensus 150 IPTL~Evl~lv~~~~v~l~iEiK~~~~~~~~~g~~~~~~~~~~l~~~l~~~g~~~~~v~iqSF--d~~~L~~~~~~ 223 (356)
T cd08560 150 LMTHKESIALFKSLGVKMTPELKSPSVPMPFDGNYTQEDYAQQMIDEYKEAGVPPSRVWPQSF--NLDDIFYWIKN 223 (356)
T ss_pred CCCHHHHHHHHHhcCceEEEEeCCCcccccccccccHHHHHHHHHHHHHHcCCCCCCEEEECC--CHHHHHHHHHh
Confidence 346788888888877777765552 123678888988754457899999 57788777554
No 216
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=32.18 E-value=1.2e+02 Score=28.84 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=32.0
Q ss_pred HHHHHHHHHHc-CCceEEeecccH-HHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCC
Q 025866 57 FRQQLELAKEL-KRPASIHCVRAF-GDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGA 116 (247)
Q Consensus 57 f~~qL~lA~~~-~lpv~lH~~~a~-~~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~G~ 116 (247)
|.+.=+|++.. +.||+||-=... .++++.+..+|..-. -.+.-+.+.++++++.|+
T Consensus 214 ~drl~eI~~~v~~vPLVLHGgSGvp~~~~~~~~~~g~~~~----~~~g~~~e~~~kai~~GI 271 (347)
T PRK13399 214 IDRIEEIHARLPNTHLVMHGSSSVPQELQEIINAYGGKMK----ETYGVPVEEIQRGIKHGV 271 (347)
T ss_pred HHHHHHHHhhcCCCCEEEeCCCCCCHHHHHHHHHhcCCcc----ccCCCCHHHHHHHHHCCC
Confidence 44444555565 566777765543 356666666653211 223335678888888874
No 217
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=32.04 E-value=89 Score=24.30 Aligned_cols=32 Identities=13% Similarity=0.088 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEeecccHHH
Q 025866 50 FMDQVGVFRQQLELAKELKRPASIHCVRAFGD 81 (247)
Q Consensus 50 ~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~~ 81 (247)
...+......+++.+.+.+.||.|||..+..+
T Consensus 60 ~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~R 91 (138)
T smart00195 60 ISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSR 91 (138)
T ss_pred hHHHHHHHHHHHHHHhcCCCeEEEECCCCCch
Confidence 34444555566666677889999999976544
No 218
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=31.90 E-value=2.3e+02 Score=23.88 Aligned_cols=86 Identities=19% Similarity=0.194 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcCCceEEeecccHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHH---CCCe--eeeccccccc--cc
Q 025866 57 FRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSK---LGAY--FSFSGFLMSM--KA 129 (247)
Q Consensus 57 f~~qL~lA~~~~lpv~lH~~~a~~~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~---~G~~--~Si~~~i~~~--~~ 129 (247)
.++..+++...-.+|-+=.-...+++.+++.+.+. ..+.+|.-. +.+.++.+.+ ...+ ++++...... ++
T Consensus 40 a~~l~~~~~~~~~~V~v~vn~~~~~i~~ia~~~~~--d~Vqlhg~e-~~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~ 116 (203)
T cd00405 40 AREIVAALPPFVKRVGVFVNEDLEEILEIAEELGL--DVVQLHGDE-SPEYCAQLRARLGLPVIKAIRVKDEEDLEKAAA 116 (203)
T ss_pred HHHHHHhCCCCCcEEEEEeCCCHHHHHHHHHhcCC--CEEEECCCC-CHHHHHHHHhhcCCcEEEEEecCChhhHHHhhh
Confidence 33344444441123333333446788889888764 345567643 4667777765 3567 5554421111 12
Q ss_pred cCCCCCceEEecCCCC
Q 025866 130 QKVPSERILLETDAPD 145 (247)
Q Consensus 130 ~~iPldriLlETD~P~ 145 (247)
.....|.+|++|..+.
T Consensus 117 ~~~~aD~il~dt~~~~ 132 (203)
T cd00405 117 YAGEVDAILLDSKSGG 132 (203)
T ss_pred ccccCCEEEEcCCCCC
Confidence 2245688999886653
No 219
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=31.87 E-value=1.6e+02 Score=26.37 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=8.5
Q ss_pred HHHHHHHHHHcCCceE
Q 025866 57 FRQQLELAKELKRPAS 72 (247)
Q Consensus 57 f~~qL~lA~~~~lpv~ 72 (247)
+...++++++++.|++
T Consensus 105 ~~~~~~l~~~~g~~vv 120 (261)
T PRK07535 105 LEVVLPLVKKYNAPVV 120 (261)
T ss_pred CHHHHHHHHHhCCCEE
Confidence 3344555555555555
No 220
>PRK07627 dihydroorotase; Provisional
Probab=31.71 E-value=1.9e+02 Score=27.72 Aligned_cols=37 Identities=5% Similarity=0.039 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCCCCc
Q 025866 205 NIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEGSK 242 (247)
Q Consensus 205 ~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~~~~ 242 (247)
.++..+..+ .-.+++++++.+....|.-++|++..+.
T Consensus 332 ~~pl~~~~~-~~~~i~~~~~l~~~t~~pA~~lg~~~G~ 368 (425)
T PRK07627 332 LLPLTLKWA-DEAKVPLARALARITSAPARVLGLPAGR 368 (425)
T ss_pred HHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHhCCCCCc
Confidence 445445443 3467999999999999999999985333
No 221
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=31.58 E-value=1.1e+02 Score=28.65 Aligned_cols=81 Identities=21% Similarity=0.259 Sum_probs=50.8
Q ss_pred CCceEEEeecCCCCC------CCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecccHHHH----HHHHHhcCCCCCcEEE
Q 025866 29 TPAAAVGEIGLDKGS------KGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDL----LEIMKSVGPFPDGVII 98 (247)
Q Consensus 29 ~~~~aIGEIGLD~~~------~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~~~----l~iLk~~~~~~~~~I~ 98 (247)
++.+-+|-|=.+.+. ++ .-+++.-+++.++|.+++.++|.|.++|......+. ++.+.+.... .+++
T Consensus 25 ~ptvL~gsiFY~~h~iV~D~~~G-~FDk~~Ae~Li~~~~elsd~tg~p~~~~v~~~~~eam~k~I~~v~~~~d~--Pl~I 101 (308)
T PRK00979 25 YPTVLIGSIFYAGHKIVSDEKKG-IFDKEKAEALINRQEELSDKTGNPALLDVVGESPEAMEKYIDFVSEITDL--PFLI 101 (308)
T ss_pred CCceEEEEeeecCceeeeccccC-ccCHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHhcCCC--CEEE
Confidence 355667766333331 11 236789999999999999999999999999876543 3444443322 2445
Q ss_pred EeCCCCHHHHHHHHHC
Q 025866 99 HSYLGSAEMVPELSKL 114 (247)
Q Consensus 99 H~fsGs~~~~~~~l~~ 114 (247)
-+- +++.....++.
T Consensus 102 DSt--~p~a~eaaLk~ 115 (308)
T PRK00979 102 DST--SPEARIAAAKY 115 (308)
T ss_pred eCC--CHHHHHHHHHH
Confidence 443 44555555543
No 222
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=31.55 E-value=2.2e+02 Score=25.87 Aligned_cols=60 Identities=20% Similarity=0.138 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHcCCceEEeeccc-------HHHHHHHH----HhcCCCCCcEEEEeC-CCCHHHHHHHHHCCC
Q 025866 55 GVFRQQLELAKELKRPASIHCVRA-------FGDLLEIM----KSVGPFPDGVIIHSY-LGSAEMVPELSKLGA 116 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a-------~~~~l~iL----k~~~~~~~~~I~H~f-sGs~~~~~~~l~~G~ 116 (247)
+..+..++.|++.+.||+|-.-.. ...+..++ ++++. ..+++|-- ..+.+.++++++.|+
T Consensus 27 e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~--vpv~lhlDH~~~~e~i~~ai~~Gf 98 (282)
T TIGR01859 27 EWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMSI--VPVALHLDHGSSYESCIKAIKAGF 98 (282)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCCC--CeEEEECCCCCCHHHHHHHHHcCC
Confidence 568888999999999999865432 22333333 33321 23667733 337888999999886
No 223
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=31.49 E-value=1.4e+02 Score=28.23 Aligned_cols=64 Identities=20% Similarity=0.203 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHcCCceEEeecccH------HHHHHHHHhc---CCCCCcEEEEeCCC-CHHHHHHHHHCCCeeee
Q 025866 55 GVFRQQLELAKELKRPASIHCVRAF------GDLLEIMKSV---GPFPDGVIIHSYLG-SAEMVPELSKLGAYFSF 120 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a~------~~~l~iLk~~---~~~~~~~I~H~fsG-s~~~~~~~l~~G~~~Si 120 (247)
+..+..++.|++.+.||+|-.-... +.+..+++.. .. ...+.+|-=-| +.+.++++++.|| =|+
T Consensus 29 e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~-~VPValHLDHg~~~e~i~~ai~~Gf-tSV 102 (347)
T PRK09196 29 EQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYP-HIPVVMHQDHGNSPATCQRAIQLGF-TSV 102 (347)
T ss_pred HHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCC-CCcEEEECCCCCCHHHHHHHHHcCC-CEE
Confidence 6788899999999999999775432 1222233222 11 01255543333 7889999999985 344
No 224
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=31.33 E-value=4.3e+02 Score=24.54 Aligned_cols=42 Identities=14% Similarity=0.127 Sum_probs=32.5
Q ss_pred ccCcchhHHHHHHHHHHccCCCHHHHHHHHHHHHHHhhCCCCC
Q 025866 199 TLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEGS 241 (247)
Q Consensus 199 ~~n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~~~~~ 241 (247)
...-...++-+++ +..-.+++.+.+.+.+..|.-++||+..+
T Consensus 242 ~~g~e~~lpl~~~-~v~~~~i~l~~l~~~~s~nPAk~~gl~~~ 283 (344)
T cd01316 242 FPGVETSLPLLLT-AVHEGRLTIEDIVDRLHTNPKRIFNLPPQ 283 (344)
T ss_pred cccHHHHHHHHHH-HHHcCCCCHHHHHHHHHHhHHHHhCCCCC
Confidence 3445667777776 33445799999999999999999999643
No 225
>PF13541 ChlI: Subunit ChlI of Mg-chelatase
Probab=31.23 E-value=31 Score=27.52 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=20.3
Q ss_pred CCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCC
Q 025866 29 TPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKR 69 (247)
Q Consensus 29 ~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~l 69 (247)
...+++||+|||-.-+. . .-....+..|+++|.
T Consensus 80 ~~~~~~GEl~L~G~ir~--v------~~~~~~~~~A~~~G~ 112 (121)
T PF13541_consen 80 EDTVFIGELGLDGEIRP--V------PGILPRIIEAKKLGF 112 (121)
T ss_pred CCEEEEEEecCCccEEe--c------CcHHHHHHHHHHCCC
Confidence 35789999999976431 1 112333446677773
No 226
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=31.20 E-value=2.3e+02 Score=24.55 Aligned_cols=56 Identities=18% Similarity=0.340 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHc---CCceEEeeccc-------------HHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHC
Q 025866 56 VFRQQLELAKEL---KRPASIHCVRA-------------FGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKL 114 (247)
Q Consensus 56 vf~~qL~lA~~~---~lpv~lH~~~a-------------~~~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~ 114 (247)
-|++.|+++... +.++.|-.... .+.+++++++++. ..++++.+|+ .+.++.+.+.
T Consensus 111 tL~evl~~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~v~~~l~~~~~-~~~v~~~Sf~--~~~l~~~~~~ 182 (263)
T cd08567 111 TLEEVFALVEKYGNQKVRFNIETKSDPDRDILHPPPEEFVDAVLAVIRKAGL-EDRVVLQSFD--WRTLQEVRRL 182 (263)
T ss_pred CHHHHHHHHHHhccCCceEEEEEcCCCCccccCccHHHHHHHHHHHHHHcCC-CCceEEEeCC--HHHHHHHHHH
Confidence 488888998886 46777755521 2577888888875 3578999995 6677777654
No 227
>PRK14047 putative methyltransferase; Provisional
Probab=30.99 E-value=84 Score=29.28 Aligned_cols=94 Identities=19% Similarity=0.265 Sum_probs=56.1
Q ss_pred CCceEEEeecCCCCC------CCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecccHHHHH----HHHHhcCCCCCcEEE
Q 025866 29 TPAAAVGEIGLDKGS------KGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLL----EIMKSVGPFPDGVII 98 (247)
Q Consensus 29 ~~~~aIGEIGLD~~~------~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~~~l----~iLk~~~~~~~~~I~ 98 (247)
.+.+-+|-|=.+.+. ++ .-+++.-+++..+|.+++..+|.|.++|.+..+.+.+ +...+... ..+++
T Consensus 25 ~PtvL~GsIFY~~HkIV~D~~~G-iFDk~~Ae~Lin~q~elsd~TGnp~~~~I~g~t~EA~~kYidfv~ei~d--~Pfli 101 (310)
T PRK14047 25 LPTVLAGTIFYNRHKIVTDEDKG-LFDREAAEKLVNLQEEMSDETGNPCVVHIFGTTPEAITNYIDFFSEVTD--SPFLI 101 (310)
T ss_pred CcceEEEEEeecCceeeeccccC-ccCHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHhhccC--CCeEe
Confidence 355666665333321 11 1368899999999999999999999999998766543 33333322 23566
Q ss_pred EeCCCCHHHH--HHHHHCC-----Ceeeeccccc
Q 025866 99 HSYLGSAEMV--PELSKLG-----AYFSFSGFLM 125 (247)
Q Consensus 99 H~fsGs~~~~--~~~l~~G-----~~~Si~~~i~ 125 (247)
-+..+....+ +..-+.| +|=||+..+.
T Consensus 102 DS~~~~~R~aa~~yv~E~GladR~IYNSIn~s~~ 135 (310)
T PRK14047 102 DSPEGEVRAAAAEYVTEIGLADRAIYNSINMSIH 135 (310)
T ss_pred cCCCHHHHHHHHhhhhhhchhHHHHHhhcCccCC
Confidence 6654433221 1112233 5667766543
No 228
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=30.92 E-value=1.9e+02 Score=25.27 Aligned_cols=95 Identities=17% Similarity=0.120 Sum_probs=51.6
Q ss_pred HHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeeccc-------------HH-HHHH
Q 025866 19 FSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRA-------------FG-DLLE 84 (247)
Q Consensus 19 l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a-------------~~-~~l~ 84 (247)
++.+++.+..+ +.+| .++.+. .+-+...+.-++..+++++++.|++|+-+=. .+ .-+.
T Consensus 24 ~~~ve~al~~G-v~~v-----QlR~K~--~~~~~~~~~a~~~~~lc~~~~v~liINd~~dlA~~~~AdGVHlGq~D~~~~ 95 (211)
T COG0352 24 LEWVEAALKGG-VTAV-----QLREKD--LSDEEYLALAEKLRALCQKYGVPLIINDRVDLALAVGADGVHLGQDDMPLA 95 (211)
T ss_pred HHHHHHHHhCC-CeEE-----EEecCC--CChHHHHHHHHHHHHHHHHhCCeEEecCcHHHHHhCCCCEEEcCCcccchH
Confidence 56777777543 3333 233221 1112225777888899999999999988721 01 1122
Q ss_pred HHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCC-eeeeccc
Q 025866 85 IMKSVGPFPDGVIIHSYLGSAEMVPELSKLGA-YFSFSGF 123 (247)
Q Consensus 85 iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~G~-~~Si~~~ 123 (247)
..++.- +.+.++-.-+.+.+++.++.+.|. |+++|+.
T Consensus 96 ~ar~~~--~~~~iIG~S~h~~eea~~A~~~g~DYv~~Gpi 133 (211)
T COG0352 96 EARELL--GPGLIIGLSTHDLEEALEAEELGADYVGLGPI 133 (211)
T ss_pred HHHHhc--CCCCEEEeecCCHHHHHHHHhcCCCEEEECCc
Confidence 222221 122234222336777777777754 7777764
No 229
>PRK08999 hypothetical protein; Provisional
Probab=30.42 E-value=2.8e+02 Score=24.95 Aligned_cols=28 Identities=11% Similarity=-0.014 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHHHHHHcCCceEEeec
Q 025866 49 DFMDQVGVFRQQLELAKELKRPASIHCV 76 (247)
Q Consensus 49 ~~~~Q~~vf~~qL~lA~~~~lpv~lH~~ 76 (247)
+.+...+..++..+++++++.+++||.+
T Consensus 169 ~~~~~~~~~~~l~~~~~~~~~~liind~ 196 (312)
T PRK08999 169 PPAAYRALARAALGLCRRAGAQLLLNGD 196 (312)
T ss_pred CHHHHHHHHHHHHHHHHHhCCEEEEECc
Confidence 4556677888888999999999999975
No 230
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=30.40 E-value=2.2e+02 Score=24.17 Aligned_cols=55 Identities=20% Similarity=0.204 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHcCCceEEeeccc-------HHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHH
Q 025866 56 VFRQQLELAKELKRPASIHCVRA-------FGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSK 113 (247)
Q Consensus 56 vf~~qL~lA~~~~lpv~lH~~~a-------~~~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~ 113 (247)
-|++.|+++...+..+.|..... ...+++++++++.. .++++-|| +.+.++.+.+
T Consensus 84 tL~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~~~~~-~~v~v~Sf--~~~~l~~~~~ 145 (220)
T cd08579 84 SLDEYLALAKGLKQKLLIELKPHGHDSPDLVEKFVKLYKQNLIE-NQHQVHSL--DYRVIEKVKK 145 (220)
T ss_pred CHHHHHHHhhccCCeEEEEECCCCCCCHHHHHHHHHHHHHcCCC-cCeEEEeC--CHHHHHHHHH
Confidence 57777788877788888887753 35678888888753 46888998 5677777765
No 231
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=30.21 E-value=1.4e+02 Score=26.55 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=35.2
Q ss_pred HHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecc
Q 025866 19 FSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVR 77 (247)
Q Consensus 19 l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~ 77 (247)
.+++.+++....++.|| +|+-. +.+.+.+...++.|+++++||+|--+.
T Consensus 45 ~~e~~~~~~~~~alvi~-~G~l~---------~~~~~~i~~~~~~a~~~~~pvVlDpv~ 93 (263)
T PRK09355 45 PEEAEEMAKIAGALVIN-IGTLT---------EERIEAMLAAGKIANEAGKPVVLDPVG 93 (263)
T ss_pred HHHHHHHHHhcCceEEe-CCCCC---------HHHHHHHHHHHHHHHhcCCCEEECCcc
Confidence 35566666666677775 77652 345666778888899999999998764
No 232
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=30.01 E-value=2.1e+02 Score=26.17 Aligned_cols=59 Identities=12% Similarity=0.156 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHcCCceEEeecccH------HHHHHHH----HhcCCCCCcEEEEeCCC-CHHHHHHHHHCCC
Q 025866 55 GVFRQQLELAKELKRPASIHCVRAF------GDLLEIM----KSVGPFPDGVIIHSYLG-SAEMVPELSKLGA 116 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a~------~~~l~iL----k~~~~~~~~~I~H~fsG-s~~~~~~~l~~G~ 116 (247)
+..+..++.|.+.+.||+|-.-... ..+..++ ++.+. .+.+|-=-| +.+.++++++.||
T Consensus 27 e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~V---PValHLDHg~~~e~i~~ai~~GF 96 (282)
T TIGR01858 27 ETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNM---PLALHLDHHESLDDIRQKVHAGV 96 (282)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCC---CEEEECCCCCCHHHHHHHHHcCC
Confidence 6788899999999999998775432 2233333 34432 355554333 6899999999986
No 233
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),
Probab=29.96 E-value=2.2e+02 Score=25.64 Aligned_cols=59 Identities=25% Similarity=0.310 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHc------CCceEEeeccc----------HHHHHHHHHhcCCC--CCcEEEEeCCCCHHHHHHHHHC
Q 025866 54 VGVFRQQLELAKEL------KRPASIHCVRA----------FGDLLEIMKSVGPF--PDGVIIHSYLGSAEMVPELSKL 114 (247)
Q Consensus 54 ~~vf~~qL~lA~~~------~lpv~lH~~~a----------~~~~l~iLk~~~~~--~~~~I~H~fsGs~~~~~~~l~~ 114 (247)
.--|++.|+++..+ +..+.|=.... ...+++++++++.. ..++++.|| +.+.++.+.+.
T Consensus 108 iptL~evl~~~~~~~~~~~~~~~l~IEiK~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~v~i~SF--~~~~L~~~r~~ 184 (296)
T cd08559 108 IPTLEEVIELAQGLNKSTGRNVGIYPETKHPTFHKQEGPDIEEKLLEVLKKYGYTGKNDPVFIQSF--EPESLKRLRNE 184 (296)
T ss_pred cCCHHHHHHHHHhhhhccCCcceEEEEecChhhhhhcCCCHHHHHHHHHHHcCCCCCCCCEEEecC--CHHHHHHHHHh
Confidence 34577788888774 56677766542 35688999988753 257899999 46777777664
No 234
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=29.72 E-value=3.8e+02 Score=23.33 Aligned_cols=59 Identities=12% Similarity=0.043 Sum_probs=37.0
Q ss_pred CChhHHHHHHHHhhcCCceEEEeecCCC---CCCCCC--CCHHHHHHHHHHHHHHHHHcCCceEE
Q 025866 14 RTPNWFSTLKEFFEITPAAAVGEIGLDK---GSKGRE--IDFMDQVGVFRQQLELAKELKRPASI 73 (247)
Q Consensus 14 ~~~~~l~~l~~~l~~~~~~aIGEIGLD~---~~~~~~--~~~~~Q~~vf~~qL~lA~~~~lpv~l 73 (247)
++...++.+.+.+.+..+ .|.-++++. +..... ...+...+.|++.+++|+++|.+.+.
T Consensus 49 ~~~~~~~~l~~~l~~~Gl-~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~ 112 (284)
T PRK13210 49 WSKEERLSLVKAIYETGV-RIPSMCLSGHRRFPFGSRDPATRERALEIMKKAIRLAQDLGIRTIQ 112 (284)
T ss_pred CCHHHHHHHHHHHHHcCC-CceEEecccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 356678899999887653 232333322 111101 11345677899999999999999775
No 235
>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional
Probab=29.69 E-value=5e+02 Score=24.71 Aligned_cols=38 Identities=13% Similarity=-0.033 Sum_probs=27.8
Q ss_pred HHHHHHcCCc----eEEeecccHHHHHHHHHhcCCCCCcEEEEeCC
Q 025866 61 LELAKELKRP----ASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYL 102 (247)
Q Consensus 61 L~lA~~~~lp----v~lH~~~a~~~~l~iLk~~~~~~~~~I~H~fs 102 (247)
++...++|+. +..||....++-+++|++.+. .|.||-.
T Consensus 236 ~~~l~~~Gll~~~~~~~H~~~l~~~d~~~la~~g~----~v~~~P~ 277 (435)
T PRK15493 236 VEYAASCGLFKRPTVIAHGVVLNDNERAFLAEHDV----RVAHNPN 277 (435)
T ss_pred HHHHHHcCCCCCCcEEEEeecCCHHHHHHHHHcCC----eEEEChH
Confidence 4444555543 789999999988899999864 5779853
No 236
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=29.55 E-value=2.4e+02 Score=25.72 Aligned_cols=74 Identities=12% Similarity=0.016 Sum_probs=41.6
Q ss_pred ChhHHHHHHHHhhcCCc---eEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCC---ceEEeecccH-------HH
Q 025866 15 TPNWFSTLKEFFEITPA---AAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKR---PASIHCVRAF-------GD 81 (247)
Q Consensus 15 ~~~~l~~l~~~l~~~~~---~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~l---pv~lH~~~a~-------~~ 81 (247)
+++.+..+.+.+.+..+ .-++|.+-+ .....+..++.+.+.+. -.+.|+.... .+
T Consensus 187 s~e~l~~~~~~A~~~g~~v~~H~~e~~~~------------~~~~~~~~~~~~~~~g~~~~~~i~H~~~~~~~~~~~~~~ 254 (398)
T cd01293 187 GEESLDTLFELAQEHGLDIDLHLDETDDP------------GSRTLEELAEEAERRGMQGRVTCSHATALGSLPEAEVSR 254 (398)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEeCCCCCc------------chhHHHHHHHHHHHhCCCCCEEeeecchhhcCCHHHHHH
Confidence 45666667666665332 234443321 11222334556666664 4668987543 25
Q ss_pred HHHHHHhcCCCCCcEEEEeCCCC
Q 025866 82 LLEIMKSVGPFPDGVIIHSYLGS 104 (247)
Q Consensus 82 ~l~iLk~~~~~~~~~I~H~fsGs 104 (247)
.++.+++.+. .+.||...+
T Consensus 255 ~~~~l~~~g~----~v~~~p~s~ 273 (398)
T cd01293 255 LADLLAEAGI----SVVSLPPIN 273 (398)
T ss_pred HHHHHHHcCC----eEEeCCCcc
Confidence 6888888763 577887544
No 237
>PRK13994 potassium-transporting ATPase subunit C; Provisional
Probab=29.49 E-value=64 Score=28.66 Aligned_cols=36 Identities=14% Similarity=0.166 Sum_probs=28.6
Q ss_pred chhHHHHHHHHHHccCCCHHHHHHHHHHHHHH-hhCC
Q 025866 203 PANIHNVLDYVASLLDMTKEELAELSYRNAIR-LFSY 238 (247)
Q Consensus 203 P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~-~f~~ 238 (247)
|.+-..=+..+|+.+|++.++|.+++.+|+.. .|++
T Consensus 165 p~aA~~Qv~RVA~argls~~~V~~LV~~~t~~~~lG~ 201 (222)
T PRK13994 165 PAYADLQVHRVAARNGLNVARVQKLVDEHTTGRTLGF 201 (222)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHccCCCccc
Confidence 55555556689999999999999999999983 4444
No 238
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=29.46 E-value=2.8e+02 Score=25.38 Aligned_cols=61 Identities=23% Similarity=0.181 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHcCCceEEeeccc-------HHHHHH----HHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCC
Q 025866 55 GVFRQQLELAKELKRPASIHCVRA-------FGDLLE----IMKSVGPFPDGVIIHSYLGSAEMVPELSKLGA 116 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a-------~~~~l~----iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~G~ 116 (247)
+..+..++.|++.+.||+|-.-.. .+.+.. +.++++. ...+.+|-=-|+.+.++++++.|+
T Consensus 29 e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~-~vPV~lHLDH~~~~~i~~ai~~Gf 100 (293)
T PRK07315 29 EWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVCKNLIENLVESMGI-TVPVAIHLDHGHYEDALECIEVGY 100 (293)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCC-CCcEEEECCCCCHHHHHHHHHcCC
Confidence 678889999999999999976442 222233 3333321 123667666667889999999875
No 239
>PRK08185 hypothetical protein; Provisional
Probab=29.25 E-value=2.5e+02 Score=25.71 Aligned_cols=62 Identities=21% Similarity=0.195 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHcCCceEEeecccH-----HHHHHHHHhcC-CCCCcEEEEeCCC-CHHHHHHHHHCCC
Q 025866 55 GVFRQQLELAKELKRPASIHCVRAF-----GDLLEIMKSVG-PFPDGVIIHSYLG-SAEMVPELSKLGA 116 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a~-----~~~l~iLk~~~-~~~~~~I~H~fsG-s~~~~~~~l~~G~ 116 (247)
+..+..++.|.+.+.||+|-.-... .++..+++... .....+.+|.=-| +.+.++++++.||
T Consensus 24 e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vPV~lHLDHg~~~e~i~~ai~~Gf 92 (283)
T PRK08185 24 CFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRSPVPFVIHLDHGATIEDVMRAIRCGF 92 (283)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCC
Confidence 5677788889999999888665422 22433333321 0112255654444 6788888888874
No 240
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=29.11 E-value=2.2e+02 Score=26.16 Aligned_cols=61 Identities=21% Similarity=0.218 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHcCCceEEeeccc-------HHHHHHHHHh----cCCCCCcEEEEeCCC-CHHHHHHHHHCCC
Q 025866 55 GVFRQQLELAKELKRPASIHCVRA-------FGDLLEIMKS----VGPFPDGVIIHSYLG-SAEMVPELSKLGA 116 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a-------~~~~l~iLk~----~~~~~~~~I~H~fsG-s~~~~~~~l~~G~ 116 (247)
+..+..++.|.+.+.||+|-.-.. ...+..+++. ... ...+.+|-=-| +.+.++++++.||
T Consensus 29 e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~-~vPV~lHLDHg~~~e~i~~ai~~Gf 101 (286)
T PRK08610 29 EFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNI-TIPVAIHLDHGSSFEKCKEAIDAGF 101 (286)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCC-CCCEEEECCCCCCHHHHHHHHHcCC
Confidence 677888999999999999876442 2334444443 321 11255543322 7899999999986
No 241
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=29.08 E-value=1.5e+02 Score=28.13 Aligned_cols=87 Identities=13% Similarity=0.108 Sum_probs=51.3
Q ss_pred ChhHHHHHHHHhhcCCceEEEeecCCCCCCC----CCCC---HHHHHHHHHHHHHHHHHcCCceEEeeccc----HHHHH
Q 025866 15 TPNWFSTLKEFFEITPAAAVGEIGLDKGSKG----REID---FMDQVGVFRQQLELAKELKRPASIHCVRA----FGDLL 83 (247)
Q Consensus 15 ~~~~l~~l~~~l~~~~~~aIGEIGLD~~~~~----~~~~---~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a----~~~~l 83 (247)
+.+|-..|.+++++..++++ -.=.|..... ..++ ...-+-..--.++.....++|++|-+=-+ ..+.+
T Consensus 88 p~e~~~~Lke~a~~~Gi~~~-SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~~~kPiIlSTGma~~~ei~~av 166 (347)
T COG2089 88 PLEWHAQLKEYARKRGIIFF-SSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAKKGKPIILSTGMATIEEIEEAV 166 (347)
T ss_pred CHHHHHHHHHHHHHcCeEEE-ecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHhcCCCEEEEcccccHHHHHHHH
Confidence 45677788888876544332 2222221100 0000 00112234456888889999999988755 45678
Q ss_pred HHHHhcCCCCCcEEEEeCCC
Q 025866 84 EIMKSVGPFPDGVIIHSYLG 103 (247)
Q Consensus 84 ~iLk~~~~~~~~~I~H~fsG 103 (247)
+++++++.. .-+++||-|.
T Consensus 167 ~~~r~~g~~-~i~LLhC~s~ 185 (347)
T COG2089 167 AILRENGNP-DIALLHCTSA 185 (347)
T ss_pred HHHHhcCCC-CeEEEEecCC
Confidence 899999863 3467799876
No 242
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=29.06 E-value=1.3e+02 Score=25.89 Aligned_cols=20 Identities=30% Similarity=0.320 Sum_probs=11.3
Q ss_pred HHHHHHHHHHcCCceE-Eeec
Q 025866 57 FRQQLELAKELKRPAS-IHCV 76 (247)
Q Consensus 57 f~~qL~lA~~~~lpv~-lH~~ 76 (247)
+.+.+.+|++++.|++ +|+.
T Consensus 105 ~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 105 DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp STTHHHHHHHHTSEEEEESES
T ss_pred cchhhhhhhcCCCEEEEEecc
Confidence 3345566666666644 5555
No 243
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=28.93 E-value=1.1e+02 Score=23.24 Aligned_cols=57 Identities=16% Similarity=-0.001 Sum_probs=43.0
Q ss_pred EEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecccHHHHHHHHHhcCC
Q 025866 34 VGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGP 91 (247)
Q Consensus 34 IGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~~~l~iLk~~~~ 91 (247)
-||++.-|.-.. ...+-.-..+...+++...+.|.|+-.|..+.-+.+.+++++.+.
T Consensus 19 tge~rmgyTlPe-yR~~G~~~~v~~~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~~lg~ 75 (89)
T PF08444_consen 19 TGEMRMGYTLPE-YRGQGLMSQVMYHLAQYLHKLGFPFYGHVDEDNEASQRLSKSLGF 75 (89)
T ss_pred cccccccccCHh-HhcCCHHHHHHHHHHHHHHHCCCCeEeehHhccHHHHHHHHHCCC
Confidence 467777654321 112334567888888889999999999999999999999999874
No 244
>PF12085 DUF3562: Protein of unknown function (DUF3562); InterPro: IPR021945 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 62 to 84 amino acids in length. This protein has two completely conserved residues (A and Y) that may be functionally important.
Probab=28.82 E-value=1.3e+02 Score=21.75 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHccCCCHHHHHHHHHHHHHHhh
Q 025866 205 NIHNVLDYVASLLDMTKEELAELSYRNAIRLF 236 (247)
Q Consensus 205 ~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f 236 (247)
++.++++.||+-.+++.+.|.+...+-...+-
T Consensus 5 ~~~e~i~~iA~~t~~P~e~V~~my~dt~~~l~ 36 (66)
T PF12085_consen 5 NVDEVIRSIAEETGTPAETVRRMYDDTMRELS 36 (66)
T ss_pred cHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 68899999999999999999888877766553
No 245
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=28.67 E-value=1.8e+02 Score=26.62 Aligned_cols=59 Identities=19% Similarity=0.217 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHcCCceEEeecccHH------HHHHHH----HhcCCCCCcEEE-EeCCCCHHHHHHHHHCCC
Q 025866 55 GVFRQQLELAKELKRPASIHCVRAFG------DLLEIM----KSVGPFPDGVII-HSYLGSAEMVPELSKLGA 116 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a~~------~~l~iL----k~~~~~~~~~I~-H~fsGs~~~~~~~l~~G~ 116 (247)
+..+..++.|++.+-||+|..-...- .+..++ ++++ -|.-+.+ |+. +.+.++++++.||
T Consensus 28 e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~-vPValHLDH~~--~~e~i~~ai~~Gf 97 (287)
T PF01116_consen 28 ETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEEAS-VPVALHLDHGK--DFEDIKRAIDAGF 97 (287)
T ss_dssp HHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHST-SEEEEEEEEE---SHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHcC-CCEEeecccCC--CHHHHHHHHHhCc
Confidence 67788899999999999998776422 222233 3333 2222333 776 5899999999986
No 246
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=28.65 E-value=5.1e+02 Score=24.52 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=22.9
Q ss_pred ceEEeecccHHHHHHHHHhcCCCCCcEEEEeCC
Q 025866 70 PASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYL 102 (247)
Q Consensus 70 pv~lH~~~a~~~~l~iLk~~~~~~~~~I~H~fs 102 (247)
.++.|+....++-++++++.+. .+.||-.
T Consensus 242 ~~~~H~~~l~~~~~~~la~~g~----~v~~~P~ 270 (430)
T PRK06038 242 VLAAHCVWLSDGDIEILRERGV----NVSHNPV 270 (430)
T ss_pred eEEEEEecCCHHHHHHHHhcCC----EEEEChH
Confidence 4669999998888999999864 5678853
No 247
>PRK05985 cytosine deaminase; Provisional
Probab=28.59 E-value=3.7e+02 Score=24.92 Aligned_cols=62 Identities=18% Similarity=0.116 Sum_probs=39.1
Q ss_pred HHHHHHHHHcCCc---eEEeeccc-------HHHHHHHHHhcCCCCCcEEEEeCCC--CHHHHHHHHHCCCeeeeccc
Q 025866 58 RQQLELAKELKRP---ASIHCVRA-------FGDLLEIMKSVGPFPDGVIIHSYLG--SAEMVPELSKLGAYFSFSGF 123 (247)
Q Consensus 58 ~~qL~lA~~~~lp---v~lH~~~a-------~~~~l~iLk~~~~~~~~~I~H~fsG--s~~~~~~~l~~G~~~Si~~~ 123 (247)
.+.++.+.+++.+ .+-|+... ..++++.+++.+. .|.|+... ...-++++++.|+-++++..
T Consensus 223 ~~~~e~~~~~g~~~~~~i~H~~~l~~~~~~~~~~~i~~lae~g~----~v~~~~~~~~~~~~~~~l~~~Gv~v~lGtD 296 (391)
T PRK05985 223 ERIAARTRALGMQGRVAVSHAFCLGDLPEREVDRLAERLAEAGV----AIMTNAPGSVPVPPVAALRAAGVTVFGGND 296 (391)
T ss_pred HHHHHHHHHhCCCCCEehhhhhhhhcCCHHHHHHHHHHHHHcCC----eEEEeCCCCCCCCCHHHHHHCCCeEEEecC
Confidence 3455566666654 66777542 2466788888753 35576221 13457889999999998853
No 248
>cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=28.30 E-value=1.2e+02 Score=30.64 Aligned_cols=48 Identities=23% Similarity=0.219 Sum_probs=32.0
Q ss_pred HHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecc
Q 025866 19 FSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVR 77 (247)
Q Consensus 19 l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~ 77 (247)
++.|.++++. .+.+++ +..|+.. --..+.+.|+.|.++|.+|.+|++.
T Consensus 203 l~eL~e~~~a-GA~GfK-~~eD~g~---------t~~~i~~aL~~A~~~dv~VaiHadt 250 (567)
T cd00375 203 PDALAEQIEA-GACGLK-LHEDWGA---------TPAAIDTCLSVADEYDVQVAIHTDT 250 (567)
T ss_pred HHHHHHHHHc-CCEEEE-ecCCCCC---------CHHHHHHHHHHHHhhCCEEEEECCC
Confidence 5556666543 244443 3334421 1257888999999999999999996
No 249
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=28.29 E-value=2.1e+02 Score=27.12 Aligned_cols=61 Identities=16% Similarity=0.175 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHcCCceEEeecccH------HHHHHHHHhc---CCCCCcEEEEeCCC-CHHHHHHHHHCCC
Q 025866 55 GVFRQQLELAKELKRPASIHCVRAF------GDLLEIMKSV---GPFPDGVIIHSYLG-SAEMVPELSKLGA 116 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a~------~~~l~iLk~~---~~~~~~~I~H~fsG-s~~~~~~~l~~G~ 116 (247)
+..+..++.|++.+-||+|-+-... +.+..+++.. .. ...+.+|-=-| +.+.++++++.||
T Consensus 29 e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~-~VPVaLHLDHg~~~e~i~~Ai~~GF 99 (347)
T PRK13399 29 EQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYP-DIPICLHQDHGNSPATCQSAIRSGF 99 (347)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcC-CCcEEEECCCCCCHHHHHHHHhcCC
Confidence 6788899999999999999775432 2233333322 11 12255544333 6889999999985
No 250
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=28.13 E-value=89 Score=27.71 Aligned_cols=55 Identities=20% Similarity=0.088 Sum_probs=34.5
Q ss_pred eecCCCCCCCC--CCCHHHHHHHHHHHHHHHHHcCCceEEee-c-------------ccHHHHHHHHHhcC
Q 025866 36 EIGLDKGSKGR--EIDFMDQVGVFRQQLELAKELKRPASIHC-V-------------RAFGDLLEIMKSVG 90 (247)
Q Consensus 36 EIGLD~~~~~~--~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~-~-------------~a~~~~l~iLk~~~ 90 (247)
-|+||-...+. ..--+.|.++++.+|+-+.+....|++|- + ...++++++++++.
T Consensus 124 ~i~Lds~~~g~~~G~l~~~ql~wL~~~L~~~~~~~~vv~~hH~P~~~~~~~~d~~~l~n~~~l~~ll~~~~ 194 (275)
T PRK11148 124 ILLLDSQVFGVPHGELSEYQLEWLERKLADAPERHTLVLLHHHPLPAGCAWLDQHSLRNAHELAEVLAKFP 194 (275)
T ss_pred EEEecCCCCCCcCCEeCHHHHHHHHHHHhhCCCCCeEEEEcCCCCCCCcchhhccCCCCHHHHHHHHhcCC
Confidence 36777543211 11236899999999988765444466763 3 12357889998873
No 251
>PRK07627 dihydroorotase; Provisional
Probab=28.05 E-value=5.4e+02 Score=24.57 Aligned_cols=94 Identities=12% Similarity=0.056 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHHHHHHcCCceEEeecccHH--HHHHHHHhcCCC-CCcEEEEeCCCCHHHHHHHHHCCCeeeeccccc
Q 025866 49 DFMDQVGVFRQQLELAKELKRPASIHCVRAFG--DLLEIMKSVGPF-PDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLM 125 (247)
Q Consensus 49 ~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~--~~l~iLk~~~~~-~~~~I~H~fsGs~~~~~~~l~~G~~~Si~~~i~ 125 (247)
+...+.....+.+++|+..+.||.|--..+.+ +++...|+.|.. ..-+..|+..-+.+.+ .+.|.++=++|.+.
T Consensus 207 P~~aE~~av~r~~~la~~~~~~~hi~HvSs~~~~~~i~~ak~~g~~vt~Ev~ph~L~l~~~~~---~~~~~~~k~~PPLR 283 (425)
T PRK07627 207 PVAAETIALHTIFELMRVTGARVHLARLSSAAGVALVRAAKAEGLPVTCDVGVNHVHLIDVDI---GYFDSQFRLDPPLR 283 (425)
T ss_pred CHHHHHHHHHHHHHHHHHHCCcEEEEeCCCHHHHHHHHHHHHCCCCeEEEeccchheEeHhHH---hccCCceEEeCCCC
Confidence 45677788899999999999997643232221 333334444421 0113456655454443 33577777777654
Q ss_pred cccccC-----C-CCCceEEecCC-CC
Q 025866 126 SMKAQK-----V-PSERILLETDA-PD 145 (247)
Q Consensus 126 ~~~~~~-----i-PldriLlETD~-P~ 145 (247)
....++ + --.--.+=||- |+
T Consensus 284 ~~~d~~~L~~~l~~G~id~i~SDHaP~ 310 (425)
T PRK07627 284 SQRDREAIRAALADGTIDAICSDHTPV 310 (425)
T ss_pred CHHHHHHHHHHHhcCCCcEEEcCCCCC
Confidence 332221 1 11234666776 65
No 252
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=27.67 E-value=2.3e+02 Score=21.04 Aligned_cols=22 Identities=9% Similarity=0.098 Sum_probs=13.5
Q ss_pred cEEEEeCCCCHH--HHHHHHHCCC
Q 025866 95 GVIIHSYLGSAE--MVPELSKLGA 116 (247)
Q Consensus 95 ~~I~H~fsGs~~--~~~~~l~~G~ 116 (247)
.+|++|-+|... .+..+...|+
T Consensus 68 ~ivv~C~~G~rs~~a~~~L~~~G~ 91 (109)
T cd01533 68 PIVVNCAGRTRSIIGAQSLINAGL 91 (109)
T ss_pred eEEEECCCCchHHHHHHHHHHCCC
Confidence 467788777544 4455555665
No 253
>TIGR01114 mtrH N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit H. coenzyme M methyltransferase subunit H in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=27.60 E-value=1.1e+02 Score=28.71 Aligned_cols=94 Identities=18% Similarity=0.237 Sum_probs=56.2
Q ss_pred CCceEEEeecCCCCC------CCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecccHHHHH----HHHHhcCCCCCcEEE
Q 025866 29 TPAAAVGEIGLDKGS------KGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLL----EIMKSVGPFPDGVII 98 (247)
Q Consensus 29 ~~~~aIGEIGLD~~~------~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~~~l----~iLk~~~~~~~~~I~ 98 (247)
.+.+-+|-|=.+.+. ++ .-+++.-+++..+|.+++..+|.|.++|....+.+.+ +...+... ..+++
T Consensus 25 ~PtvL~GSIFY~~HkIV~D~~~G-iFDk~~Ae~Lin~q~elsd~tGnp~~~qI~~~t~EA~~kYidfv~~i~d--~Pfli 101 (314)
T TIGR01114 25 YPTVLAGTIFYARHKIVEDEDKG-IFDKAAAETLIKTQEELSDATGNPYVVQIFGETPEAIVRYIDWVADITD--APFLI 101 (314)
T ss_pred CCceEEEEEeecCceeeeccccC-ccCHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHhcccC--CCeEe
Confidence 455666666333321 11 1367899999999999999999999999998766543 33333222 23566
Q ss_pred EeCCCCHHHH--HHHHHCC-----Ceeeeccccc
Q 025866 99 HSYLGSAEMV--PELSKLG-----AYFSFSGFLM 125 (247)
Q Consensus 99 H~fsGs~~~~--~~~l~~G-----~~~Si~~~i~ 125 (247)
-+.++....+ +..-+.| +|=||+..+.
T Consensus 102 DS~~~~~r~aa~ky~~E~GladR~IYNSIn~s~~ 135 (314)
T TIGR01114 102 DSTSGEARAAAAKYATEVGLADRAIYNSINASIE 135 (314)
T ss_pred cCCcHHHHHHHhhhhhhhchHHHHHHhhcCccCC
Confidence 6654433221 1222233 5767766543
No 254
>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=27.50 E-value=5.3e+02 Score=24.33 Aligned_cols=30 Identities=10% Similarity=0.008 Sum_probs=24.2
Q ss_pred ceEEeecccHHHHHHHHHhcCCCCCcEEEEeCCC
Q 025866 70 PASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLG 103 (247)
Q Consensus 70 pv~lH~~~a~~~~l~iLk~~~~~~~~~I~H~fsG 103 (247)
.++.||....++-+++|++.+. .+.||-..
T Consensus 258 ~~~~H~~~l~~~~~~~la~~g~----~v~~~P~s 287 (418)
T cd01313 258 WCLVHATHLTDNETLLLGRSGA----VVGLCPTT 287 (418)
T ss_pred EEEEeCCCCCHHHHHHHHHcCC----EEEECCCc
Confidence 4789999998888999999863 57788653
No 255
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=27.42 E-value=2.2e+02 Score=24.99 Aligned_cols=38 Identities=11% Similarity=0.160 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHcCCceEEeec-----ccHHHHHHHHHhcCC
Q 025866 54 VGVFRQQLELAKELKRPASIHCV-----RAFGDLLEIMKSVGP 91 (247)
Q Consensus 54 ~~vf~~qL~lA~~~~lpv~lH~~-----~a~~~~l~iLk~~~~ 91 (247)
.+.+++..++|+++|..+.||.. ....+++++++..+.
T Consensus 132 ~~~l~~l~~~A~~~Gv~l~lE~~~~~~~~t~~~~~~li~~v~~ 174 (279)
T TIGR00542 132 REGLKEAVELAARAQVTLAVEIMDTPFMSSISKWLKWDHYLNS 174 (279)
T ss_pred HHHHHHHHHHHHHcCCEEEEeeCCCchhcCHHHHHHHHHHcCC
Confidence 45677888999999999999974 234577888887754
No 256
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=27.33 E-value=2.9e+02 Score=23.57 Aligned_cols=56 Identities=27% Similarity=0.337 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHcCCceEEeeccc-------HHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHC
Q 025866 56 VFRQQLELAKELKRPASIHCVRA-------FGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKL 114 (247)
Q Consensus 56 vf~~qL~lA~~~~lpv~lH~~~a-------~~~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~ 114 (247)
-|+..++++.+.+..++|=.... .+.+++++++++. ..++++.+| +.+.++.+.+.
T Consensus 90 tL~evl~~~~~~~~~l~leiK~~~~~~~~~~~~l~~~l~~~~~-~~~v~~~Sf--~~~~l~~~~~~ 152 (230)
T cd08563 90 TLEEVLDLLKDKDLLLNIEIKTDVIHYPGIEKKVLELVKEYNL-EDRVIFSSF--NHESLKRLKKL 152 (230)
T ss_pred CHHHHHHHHHhcCcEEEEEECCCCCcChhHHHHHHHHHHHcCC-CCCEEEEcC--CHHHHHHHHHH
Confidence 37777777777777777766542 3578899999874 357899999 46677777664
No 257
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=26.96 E-value=2.4e+02 Score=25.75 Aligned_cols=62 Identities=21% Similarity=0.265 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHcCCceEEeecccH------HHHHHHHHhcC-CCCCcEEEEeCCC-CHHHHHHHHHCCC
Q 025866 55 GVFRQQLELAKELKRPASIHCVRAF------GDLLEIMKSVG-PFPDGVIIHSYLG-SAEMVPELSKLGA 116 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a~------~~~l~iLk~~~-~~~~~~I~H~fsG-s~~~~~~~l~~G~ 116 (247)
+..+..++.|++.+.||+|-.-... +.+..+++... ..+..+.+|-=-| +.+.+.++++.||
T Consensus 24 e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VPV~lHLDH~~~~~~i~~ai~~Gf 93 (276)
T cd00947 24 ETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERASVPVALHLDHGSSFELIKRAIRAGF 93 (276)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCC
Confidence 5778889999999999998775432 23333333321 0012255543333 5789999999983
No 258
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=26.90 E-value=2.9e+02 Score=25.74 Aligned_cols=60 Identities=17% Similarity=0.142 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHcCCceEEeecccH------HHHHHHH----HhcCCCCCcEEEEeCCC-CHHHHHHHHHCCC
Q 025866 55 GVFRQQLELAKELKRPASIHCVRAF------GDLLEIM----KSVGPFPDGVIIHSYLG-SAEMVPELSKLGA 116 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a~------~~~l~iL----k~~~~~~~~~I~H~fsG-s~~~~~~~l~~G~ 116 (247)
+..+..++.|++.+.||+|-+-... +.+..++ ++... ..+.+|.=-| +.+.++++++.||
T Consensus 28 e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~--VPValHLDHg~~~e~i~~ai~~Gf 98 (307)
T PRK05835 28 EMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPH--IPVALHLDHGTTFESCEKAVKAGF 98 (307)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCC--CeEEEECCCCCCHHHHHHHHHcCC
Confidence 6778889999999999999876532 2222333 33321 2355654434 7999999999985
No 259
>PRK08044 allantoinase; Provisional
Probab=26.64 E-value=2.4e+02 Score=27.07 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHcCCceEEeeccc
Q 025866 55 GVFRQQLELAKELKRPASIHCVRA 78 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a 78 (247)
..+.+.++.++++|+||++|+.+.
T Consensus 167 ~~l~~~~~~~~~~~~~v~~H~E~~ 190 (449)
T PRK08044 167 WQFYKGAQKLGELGQPVLVHCENA 190 (449)
T ss_pred HHHHHHHHHHHhcCCEEEEecCCH
Confidence 356667777888999999999864
No 260
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=26.54 E-value=3.7e+02 Score=22.19 Aligned_cols=91 Identities=14% Similarity=0.159 Sum_probs=52.5
Q ss_pred hhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecccHHHHHHHHHhcCCCCCc
Q 025866 16 PNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDG 95 (247)
Q Consensus 16 ~~~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~~~l~iLk~~~~~~~~ 95 (247)
.+.++.+.+.+..+ +..| -++. ...+.+.-.+..++..+++++++.+++||.+ .++..+.+. .+
T Consensus 12 ~~~~~~l~~~~~~g-v~~v-----~lR~--k~~~~~~~~~~a~~l~~~~~~~~~~liin~~------~~la~~~~~--dG 75 (180)
T PF02581_consen 12 DDFLEQLEAALAAG-VDLV-----QLRE--KDLSDEELLELARRLAELCQKYGVPLIINDR------VDLALELGA--DG 75 (180)
T ss_dssp CHHHHHHHHHHHTT--SEE-----EEE---SSS-HHHHHHHHHHHHHHHHHTTGCEEEES-------HHHHHHCT---SE
T ss_pred chHHHHHHHHHHCC-CcEE-----EEcC--CCCCccHHHHHHHHHHHHhhcceEEEEecCC------HHHHHhcCC--CE
Confidence 45678888888764 2221 1221 1224455567888889999999999999985 234444543 23
Q ss_pred EEEEeCCCCHHHHHHHHHCCCeeeecc
Q 025866 96 VIIHSYLGSAEMVPELSKLGAYFSFSG 122 (247)
Q Consensus 96 ~I~H~fsGs~~~~~~~l~~G~~~Si~~ 122 (247)
+.+-.-.-+...+++.+..+.++|.+-
T Consensus 76 vHl~~~~~~~~~~r~~~~~~~~ig~S~ 102 (180)
T PF02581_consen 76 VHLGQSDLPPAEARKLLGPDKIIGASC 102 (180)
T ss_dssp EEEBTTSSSHHHHHHHHTTTSEEEEEE
T ss_pred EEecccccchHHhhhhcccceEEEeec
Confidence 222222224555566666677777663
No 261
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=26.43 E-value=5.6e+02 Score=24.28 Aligned_cols=30 Identities=17% Similarity=0.157 Sum_probs=23.5
Q ss_pred CceEEeecccHHHHHHHHHhcCCCCCcEEEEeCC
Q 025866 69 RPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYL 102 (247)
Q Consensus 69 lpv~lH~~~a~~~~l~iLk~~~~~~~~~I~H~fs 102 (247)
..++.|+....++.++.+++.+. .+.||-+
T Consensus 265 ~~~~~H~~~l~~~~~~~la~~g~----~v~~~P~ 294 (451)
T PRK08203 265 DVWLAHCVHLDDAEIARLARTGT----GVAHCPC 294 (451)
T ss_pred CeEEEEEeCCCHHHHHHHHhcCC----eEEECcH
Confidence 44789999998989999999863 4668753
No 262
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=26.37 E-value=2.9e+02 Score=22.40 Aligned_cols=73 Identities=14% Similarity=-0.064 Sum_probs=40.5
Q ss_pred eecccccCCC---ChhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecccHHH
Q 025866 5 CFIFRFVQER---TPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGD 81 (247)
Q Consensus 5 g~hP~~~~~~---~~~~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~~ 81 (247)
|+|+|.+... +++.++.+.+......++.|| .|.+..... . .. ....++.+.-+-.=+-+|.-+
T Consensus 43 gv~~W~v~~~~~Lt~e~f~~vl~~a~~~EilliG-TG~~~rf~p----~-----~l---~aal~~~gIsve~Mst~AA~R 109 (127)
T COG3737 43 GVCDWEVATLSDLTPEDFERVLAEAPDVEILLIG-TGARLRFPP----P-----KL---RAALKAAGISVEPMSTGAAVR 109 (127)
T ss_pred ccccccccChhhCCHHHHHHHHhcCCCceEEEEe-cCccccCCC----H-----HH---HHHHHHcCCccccccchhhHH
Confidence 4788888754 445455555444444678888 899876532 1 11 122233444444444455566
Q ss_pred HHHHHHhcC
Q 025866 82 LLEIMKSVG 90 (247)
Q Consensus 82 ~l~iLk~~~ 90 (247)
++.+|-..+
T Consensus 110 TYNvL~sEg 118 (127)
T COG3737 110 TYNVLLSEG 118 (127)
T ss_pred HHHHHHhcc
Confidence 666665543
No 263
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=26.12 E-value=2.3e+02 Score=25.26 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=16.1
Q ss_pred HHcCCceEEeeccc-HHHHHHHHHhcC
Q 025866 65 KELKRPASIHCVRA-FGDLLEIMKSVG 90 (247)
Q Consensus 65 ~~~~lpv~lH~~~a-~~~~l~iLk~~~ 90 (247)
-+.|.+++-|.-.. .+++++++++++
T Consensus 92 l~~G~~iINsis~~~~~~~~~l~~~~~ 118 (257)
T TIGR01496 92 LEAGADIINDVSGGQDPAMLEVAAEYG 118 (257)
T ss_pred HHcCCCEEEECCCCCCchhHHHHHHcC
Confidence 33466666666554 666666666665
No 264
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=25.87 E-value=4.9e+02 Score=23.40 Aligned_cols=93 Identities=18% Similarity=0.145 Sum_probs=50.8
Q ss_pred HHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHH-------------HHHHHHHHHHHHcCCceEEeecc------c
Q 025866 18 WFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQV-------------GVFRQQLELAKELKRPASIHCVR------A 78 (247)
Q Consensus 18 ~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~-------------~vf~~qL~lA~~~~lpv~lH~~~------a 78 (247)
.++.+..+. +..+-+| |+|++|..... .---.|+ .+|+..-++.++.+.|+++=+-- .
T Consensus 31 ~~~~~~~l~-~~Gad~i-ElGiPfSDP~a-DGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G 107 (263)
T CHL00200 31 TKKALKILD-KKGADII-ELGIPYSDPLA-DGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHYG 107 (263)
T ss_pred HHHHHHHHH-HCCCCEE-EECCCCCCCCc-cCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhC
Confidence 344444444 4455555 99999986421 1122332 34554445554567787755542 4
Q ss_pred HHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHH----HHCCCe
Q 025866 79 FGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPEL----SKLGAY 117 (247)
Q Consensus 79 ~~~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~----l~~G~~ 117 (247)
.++.++-+++.|. .++|+|-- +.+...++ .+.|..
T Consensus 108 ~e~F~~~~~~aGv--dgviipDL--P~ee~~~~~~~~~~~gi~ 146 (263)
T CHL00200 108 INKFIKKISQAGV--KGLIIPDL--PYEESDYLISVCNLYNIE 146 (263)
T ss_pred HHHHHHHHHHcCC--eEEEecCC--CHHHHHHHHHHHHHcCCC
Confidence 5677777777764 34666654 33444333 345643
No 265
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=25.62 E-value=5.4e+02 Score=24.20 Aligned_cols=51 Identities=22% Similarity=0.302 Sum_probs=32.5
Q ss_pred hHHHHHHHHhhcC-CceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCce
Q 025866 17 NWFSTLKEFFEIT-PAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPA 71 (247)
Q Consensus 17 ~~l~~l~~~l~~~-~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv 71 (247)
..++.+...+..+ ..+.|||- ++.-+.....+..+. +++.+++|.++|+-+
T Consensus 14 g~l~~l~~ai~~GADaVY~G~~--~~~~R~~a~nfs~~~--l~e~i~~ah~~gkk~ 65 (347)
T COG0826 14 GNLEDLKAAIAAGADAVYIGEK--EFGLRRRALNFSVED--LAEAVELAHSAGKKV 65 (347)
T ss_pred CCHHHHHHHHHcCCCEEEeCCc--ccccccccccCCHHH--HHHHHHHHHHcCCeE
Confidence 4578888887764 45777765 233222111233444 999999999999943
No 266
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=25.55 E-value=1.5e+02 Score=28.14 Aligned_cols=61 Identities=18% Similarity=0.199 Sum_probs=36.2
Q ss_pred HHHHHHHHHHc-CCceEEeecccH-HHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCC-eeeec
Q 025866 57 FRQQLELAKEL-KRPASIHCVRAF-GDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGA-YFSFS 121 (247)
Q Consensus 57 f~~qL~lA~~~-~lpv~lH~~~a~-~~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~G~-~~Si~ 121 (247)
|.+.=+|.+.. +.|++||-=... .+.++++.++|..- =-.+.-+.+.++++++.|+ .+-|+
T Consensus 212 ~~rL~eI~~~v~~vPLVLHGgSG~p~~~~~~~~~~~~~~----~~~~g~p~e~i~~ai~~GI~KVNi~ 275 (347)
T TIGR01521 212 IQRIEEIHARLPDTHLVMHGSSSVPQEWLDIINEYGGEI----KETYGVPVEEIVEGIKYGVRKVNID 275 (347)
T ss_pred HHHHHHHHccCCCCCEEEeCCCCCchHhhHHHHhhcccc----cccCCCCHHHHHHHHHCCCeeEEeC
Confidence 34444555566 577777766554 36677777776421 1233336788899998884 44444
No 267
>cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=25.49 E-value=2.7e+02 Score=24.13 Aligned_cols=57 Identities=2% Similarity=0.049 Sum_probs=38.3
Q ss_pred HHHHHHHHHHH-cCCceEEeecccH-------HHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHC
Q 025866 56 VFRQQLELAKE-LKRPASIHCVRAF-------GDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKL 114 (247)
Q Consensus 56 vf~~qL~lA~~-~~lpv~lH~~~a~-------~~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~ 114 (247)
-|++.|++++. .+.++.|-..... ..+.++++..+....++++.|| +.+.++.+.++
T Consensus 90 tL~evl~~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~SF--~~~~l~~~r~~ 154 (229)
T cd08581 90 SLAAVVQWLAQHPQVTLFVEIKTESLDRFGLERVVDKVLRALPAVAAQRVLISF--DYDLLALAKQQ 154 (229)
T ss_pred CHHHHHHHHhhCCCceEEEEecCCcccccchhHHHHHHHHHHHhccCCeEEEeC--CHHHHHHHHhc
Confidence 47778888877 4778888776432 2344566655422346888999 57788888776
No 268
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=25.45 E-value=2.2e+02 Score=22.94 Aligned_cols=72 Identities=21% Similarity=0.252 Sum_probs=45.7
Q ss_pred hhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHc-CCceEEeeccc-HHHHHHHHHhcC
Q 025866 16 PNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKEL-KRPASIHCVRA-FGDLLEIMKSVG 90 (247)
Q Consensus 16 ~~~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~-~lpv~lH~~~a-~~~~l~iLk~~~ 90 (247)
...++.|.+++.+..+..| =|||+....+...+...+.+-|.+ +|+..+ ++||.+-..+- +.+..+.|++.+
T Consensus 37 ~~~~~~l~~li~~~~i~~i-VvGlP~~~~G~~~~~~~~v~~f~~--~L~~~~~~ipV~~~DEr~TT~~A~~~l~~~g 110 (135)
T PF03652_consen 37 EKDIEELKKLIEEYQIDGI-VVGLPLNMDGSESEQARRVRKFAE--ELKKRFPGIPVILVDERLTTKEAERRLRESG 110 (135)
T ss_dssp CCCHHHHHHHHHHCCECEE-EEEEEBBCTSSC-CCHHHHHHHHH--HHHHHH-TSEEEEEECSCSHHCCHCCHHHTT
T ss_pred chHHHHHHHHHHHhCCCEE-EEeCCcccCCCccHHHHHHHHHHH--HHHHhcCCCcEEEECCChhHHHHHHHHHHcC
Confidence 4678999999988765444 388988765544444444444444 455566 99999888774 334445555543
No 269
>PRK14000 potassium-transporting ATPase subunit C; Provisional
Probab=25.22 E-value=85 Score=27.13 Aligned_cols=35 Identities=11% Similarity=0.116 Sum_probs=27.9
Q ss_pred chhHHHHHHHHHHccCCCHHHHHHHHHHHHH-HhhC
Q 025866 203 PANIHNVLDYVASLLDMTKEELAELSYRNAI-RLFS 237 (247)
Q Consensus 203 P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~-~~f~ 237 (247)
|..-..=+..+|+.+|++.++|.+++.+|+. ++||
T Consensus 134 p~aA~~Qv~RVA~argls~~~v~~LV~~~t~~~~~G 169 (185)
T PRK14000 134 VDNAKQQVKRIAKERNIDASKINHLIDENKQASPMA 169 (185)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHhccCCcCC
Confidence 5555555667899999999999999999988 3443
No 270
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=25.20 E-value=4.2e+02 Score=26.89 Aligned_cols=59 Identities=20% Similarity=0.301 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHcCCceEEeeccc------HHHHHHHHHhcCCCCCcEEEEeCCCCH--------HHHHHHHHCCC
Q 025866 55 GVFRQQLELAKELKRPASIHCVRA------FGDLLEIMKSVGPFPDGVIIHSYLGSA--------EMVPELSKLGA 116 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a------~~~~l~iLk~~~~~~~~~I~H~fsGs~--------~~~~~~l~~G~ 116 (247)
.+.+..++.|.+.|.-+ +|...+ ....++..++.|.. ..+.+ ||++++ +.++++.+.|+
T Consensus 97 dvv~~~v~~a~~~Gid~-~rifd~lnd~~~~~~ai~~ak~~G~~-~~~~i-~yt~~p~~~~~~~~~~a~~l~~~Ga 169 (593)
T PRK14040 97 DVVERFVERAVKNGMDV-FRVFDAMNDPRNLETALKAVRKVGAH-AQGTL-SYTTSPVHTLQTWVDLAKQLEDMGV 169 (593)
T ss_pred HHHHHHHHHHHhcCCCE-EEEeeeCCcHHHHHHHHHHHHHcCCe-EEEEE-EEeeCCccCHHHHHHHHHHHHHcCC
Confidence 46677888898888765 444433 33456666776642 11222 666666 56677777775
No 271
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=25.02 E-value=98 Score=19.86 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=16.3
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHH
Q 025866 208 NVLDYVASLLDMTKEELAELSYRN 231 (247)
Q Consensus 208 ~v~~~iA~~~~~s~e~l~~~~~~N 231 (247)
.....||+..|.+...|.+-+.+|
T Consensus 21 ~s~~~IA~~lg~s~sTV~relkR~ 44 (44)
T PF13936_consen 21 MSIREIAKRLGRSRSTVSRELKRN 44 (44)
T ss_dssp --HHHHHHHTT--HHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCcHHHHHHHhcC
Confidence 345678888899998888888776
No 272
>cd08566 GDPD_AtGDE_like Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (AtGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homolgoues. Members in this family shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. AtGDE exists as a hexamer that is a trimer of dimers, which is unique among current known GDPD family members. However, it remains unclear if the hexamer plays a physiological role in AtGDE enzymatic function.
Probab=24.98 E-value=2.8e+02 Score=24.16 Aligned_cols=55 Identities=25% Similarity=0.377 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHcCCceEEeecc-cHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHC
Q 025866 56 VFRQQLELAKELKRPASIHCVR-AFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKL 114 (247)
Q Consensus 56 vf~~qL~lA~~~~lpv~lH~~~-a~~~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~ 114 (247)
-|++.|+++... ..++|=... ....+++++++++.. .+++|.+|+ .+.++.+.+.
T Consensus 89 tL~evl~~~~~~-~~l~iEiK~~~~~~~~~~~~~~~~~-~~v~~~sf~--~~~l~~~~~~ 144 (240)
T cd08566 89 TLEEALAWAKGK-ILLNLDLKDADLDEVIALVKKHGAL-DQVIFKSYS--EEQAKELRAL 144 (240)
T ss_pred CHHHHHHhhhcC-cEEEEEECchHHHHHHHHHHHcCCc-ccEEEEECC--HHHHHHHHHh
Confidence 477777777664 666776665 467889999998764 478999995 5777777775
No 273
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=24.86 E-value=2e+02 Score=24.73 Aligned_cols=73 Identities=15% Similarity=0.193 Sum_probs=48.5
Q ss_pred CceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeeccc--HHHHHHHH------HhcCCCCCcEEEEeC
Q 025866 30 PAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRA--FGDLLEIM------KSVGPFPDGVIIHSY 101 (247)
Q Consensus 30 ~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a--~~~~l~iL------k~~~~~~~~~I~H~f 101 (247)
.+.+| |+|++++.. ...+ ++.+.++..++.++||++=...+ ...+.... .+.+. .-+.+|+|
T Consensus 25 ~v~~i-KvG~~l~~~-----~G~~--~l~~~i~~l~~~~~~I~~D~K~~Dig~t~~~~~~~~~~~~~~ga--D~vTv~~~ 94 (226)
T PF00215_consen 25 YVDII-KVGTPLFLA-----YGLE--ALPEIIEELKERGKPIFLDLKLGDIGNTVARYAEAGFAAFELGA--DAVTVHPF 94 (226)
T ss_dssp GSSEE-EEEHHHHHH-----HCHH--HHHHHHHHHHHTTSEEEEEEEE-SSHHHHHHHHHSCHHHHTTTE--SEEEEEGT
T ss_pred cceEE-EEChHHHhc-----CChh--hHHHHHHHHHHhcCCEeeeeeecccchHHHHHHHHhhhhhcCCC--cEEEEecc
Confidence 45556 999998742 1122 89999999999999999766543 23333344 34443 34678999
Q ss_pred CCCHHHHHHHHH
Q 025866 102 LGSAEMVPELSK 113 (247)
Q Consensus 102 sGs~~~~~~~l~ 113 (247)
.| .++++.+++
T Consensus 95 ~G-~~tl~~~~~ 105 (226)
T PF00215_consen 95 AG-DDTLEAAVK 105 (226)
T ss_dssp TH-HHHHHHHHH
T ss_pred CC-HHHHHHHHH
Confidence 88 667776665
No 274
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=24.75 E-value=4.4e+02 Score=24.16 Aligned_cols=59 Identities=17% Similarity=0.088 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHcCCceEEeecccH------HHHHH----HHHhcCCCCCcEEEEeCCC-CHHHHHHHHHCCC
Q 025866 55 GVFRQQLELAKELKRPASIHCVRAF------GDLLE----IMKSVGPFPDGVIIHSYLG-SAEMVPELSKLGA 116 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a~------~~~l~----iLk~~~~~~~~~I~H~fsG-s~~~~~~~l~~G~ 116 (247)
+..+..++.|++.+-||+|-.-... ..+.. +.++++. .+.+|-=-| +.+.++++++.||
T Consensus 29 e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~v---PV~lHLDH~~~~e~i~~Ai~~Gf 98 (283)
T PRK07998 29 ETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDV---PVSLHLDHGKTFEDVKQAVRAGF 98 (283)
T ss_pred HHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCC---CEEEECcCCCCHHHHHHHHHcCC
Confidence 5678889999999999998764421 22222 3344432 255544333 6789999999985
No 275
>PRK09229 N-formimino-L-glutamate deiminase; Validated
Probab=24.66 E-value=6.2e+02 Score=24.15 Aligned_cols=49 Identities=12% Similarity=0.006 Sum_probs=33.2
Q ss_pred ceEEeecccHHHHHHHHHhcCCCCCcEEEEeCCCCH------HHHHHHHHCCCeeeecc
Q 025866 70 PASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSA------EMVPELSKLGAYFSFSG 122 (247)
Q Consensus 70 pv~lH~~~a~~~~l~iLk~~~~~~~~~I~H~fsGs~------~~~~~~l~~G~~~Si~~ 122 (247)
-++.||....++-++++++.+. .+.||-+.+. .-++++++.|+-++++.
T Consensus 267 ~~l~H~~~l~~~d~~~la~~g~----~v~~~P~sn~~lg~g~~p~~~l~~~Gv~v~lGt 321 (456)
T PRK09229 267 WCLVHATHLTDAETARLARSGA----VAGLCPTTEANLGDGIFPAVDYLAAGGRFGIGS 321 (456)
T ss_pred eEEEeeccCCHHHHHHHHHcCC----eEEECchhhhhhcCCCCCHHHHHHCCCeEEEec
Confidence 3779999998888999999864 4678864221 12355666666666654
No 276
>PRK06687 chlorohydrolase; Validated
Probab=24.66 E-value=3.4e+02 Score=25.44 Aligned_cols=29 Identities=21% Similarity=0.131 Sum_probs=22.9
Q ss_pred ceEEeecccHHHHHHHHHhcCCCCCcEEEEeCC
Q 025866 70 PASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYL 102 (247)
Q Consensus 70 pv~lH~~~a~~~~l~iLk~~~~~~~~~I~H~fs 102 (247)
.+..|+....++-+++|++.+. .+.||-.
T Consensus 248 ~~~~H~~~~~~~~~~~la~~g~----~v~~~P~ 276 (419)
T PRK06687 248 SVFAHGVELNEREIERLASSQV----AIAHNPI 276 (419)
T ss_pred eEEEEEecCCHHHHHHHHHcCC----eEEECcH
Confidence 3679999998988999999763 4678753
No 277
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=24.46 E-value=3.5e+02 Score=25.26 Aligned_cols=84 Identities=13% Similarity=0.094 Sum_probs=52.5
Q ss_pred hhHHHHHHHHhhcCC---ceE-----EEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHc-CCceEEeeccc-HHHHHHH
Q 025866 16 PNWFSTLKEFFEITP---AAA-----VGEIGLDKGSKGREIDFMDQVGVFRQQLELAKEL-KRPASIHCVRA-FGDLLEI 85 (247)
Q Consensus 16 ~~~l~~l~~~l~~~~---~~a-----IGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~-~lpv~lH~~~a-~~~~l~i 85 (247)
.+++..+.+...++. ..+ ++..++++.+ .-+...+++..+. ++|++.=+... ..+.++.
T Consensus 54 ~~~i~~~~~~~~~p~~~~~f~~~~~~v~~~~l~~~~-----------~~~~~~~~~ii~~~~vpvv~~~~g~~~~~~i~~ 122 (336)
T COG2070 54 RAEIRKIRALTDKPFVANNFGSAPAPVNVNILVARR-----------NAAEAGVDAIIEGAGVPVVSTSFGAPPAEFVAR 122 (336)
T ss_pred HHHHHHHHHhcCCcchhcccccccccchhheecccc-----------cchHHhhhhHHhcCCCCEEeccCCCCcHHHHHH
Confidence 345555555554441 234 6666666542 3455666666665 99999988884 8888999
Q ss_pred HHhcCCCCCcEEEEeCCCCHHHHHHHHHCC
Q 025866 86 MKSVGPFPDGVIIHSYLGSAEMVPELSKLG 115 (247)
Q Consensus 86 Lk~~~~~~~~~I~H~fsGs~~~~~~~l~~G 115 (247)
++..+. .++|... +...++++.+.|
T Consensus 123 ~~~~g~----~v~~~v~-~~~~A~~~~~~G 147 (336)
T COG2070 123 LKAAGI----KVIHSVI-TVREALKAERAG 147 (336)
T ss_pred HHHcCC----eEEEEeC-CHHHHHHHHhCC
Confidence 988763 3456553 466666665544
No 278
>PRK06801 hypothetical protein; Provisional
Probab=24.35 E-value=4.7e+02 Score=23.92 Aligned_cols=59 Identities=22% Similarity=0.245 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHcCCceEEeecccH------HHHHHHH----HhcCCCCCcEEEEeCCC-CHHHHHHHHHCCC
Q 025866 55 GVFRQQLELAKELKRPASIHCVRAF------GDLLEIM----KSVGPFPDGVIIHSYLG-SAEMVPELSKLGA 116 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a~------~~~l~iL----k~~~~~~~~~I~H~fsG-s~~~~~~~l~~G~ 116 (247)
+..+..++.|++.+.||+|-.-... +.+..++ ++... .+.+|.=-| +.+.++++++.|+
T Consensus 29 e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~v---pV~lHlDH~~~~e~i~~Ai~~Gf 98 (286)
T PRK06801 29 HFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHDI---PVVLNLDHGLHFEAVVRALRLGF 98 (286)
T ss_pred HHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCC---CEEEECCCCCCHHHHHHHHHhCC
Confidence 6778889999999999998665432 2233333 33332 255654433 6789999999885
No 279
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=24.30 E-value=4.5e+02 Score=22.38 Aligned_cols=83 Identities=20% Similarity=0.177 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHcCC--ceEEeecccHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCCe--------ee
Q 025866 50 FMDQVGVFRQQLELAKELKR--PASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAY--------FS 119 (247)
Q Consensus 50 ~~~Q~~vf~~qL~lA~~~~l--pv~lH~~~a~~~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~G~~--------~S 119 (247)
-+.|.++-++.+++|+++|. .+.|+.--+.. .. ...++..|. .+.+.++++-..|.- .|
T Consensus 29 p~~~~e~a~~vld~a~~~gv~~iitLgG~~~~~-------~~--trp~V~~~a--t~~el~~~l~~~g~~~~~~~g~i~G 97 (188)
T TIGR00162 29 PEGQYELVNAIIDVAKKYGARMIYTLGGYGVGK-------LV--EEPYVYGAA--TSPELVEELKEHGVKFREPGGGIIG 97 (188)
T ss_pred hhhHHHHHHHHHHHHHHcCCCEEEEecCCcCCC-------CC--CCCceEEEe--CCHHHHHHHHhcCCeeecCCCcccc
Confidence 35677899999999999885 44455433211 01 112222243 366777777655433 34
Q ss_pred eccccccc-cccCCCCCceEEecCC
Q 025866 120 FSGFLMSM-KAQKVPSERILLETDA 143 (247)
Q Consensus 120 i~~~i~~~-~~~~iPldriLlETD~ 143 (247)
++|.+... ..+.+|-=.|+.||..
T Consensus 98 ~~glLl~~a~~~gi~ai~L~~e~p~ 122 (188)
T TIGR00162 98 ASGLLLGVSELEGIPGACLMGETPG 122 (188)
T ss_pred HHHHHHHHHHHCCCCeEEEEEeCCC
Confidence 45544322 2234888889999955
No 280
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=24.28 E-value=4.2e+02 Score=24.27 Aligned_cols=61 Identities=21% Similarity=0.166 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHcCCceEEeecccH-------HHHHHHH----HhcCCCCCcEEEEeCCC-CHHHHHHHHHCCC
Q 025866 55 GVFRQQLELAKELKRPASIHCVRAF-------GDLLEIM----KSVGPFPDGVIIHSYLG-SAEMVPELSKLGA 116 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a~-------~~~l~iL----k~~~~~~~~~I~H~fsG-s~~~~~~~l~~G~ 116 (247)
+..+..++.|++.+.||+|-.-... +.+..++ ++.+. +..+.+|.=-| +.+.++++++.||
T Consensus 29 e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~VPV~lHLDHg~~~e~i~~ai~~Gf 101 (285)
T PRK07709 29 EWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNI-TVPVAIHLDHGSSFEKCKEAIDAGF 101 (285)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCC-CCcEEEECCCCCCHHHHHHHHHcCC
Confidence 6788899999999999998765421 2222333 33321 11355654433 6899999999986
No 281
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=24.22 E-value=99 Score=27.82 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCceEEeecccHHH
Q 025866 49 DFMDQVGVFRQQLELAKELKRPASIHCVRAFGD 81 (247)
Q Consensus 49 ~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~~ 81 (247)
|-..+.+-|...++-+.+.+.+|.|||+.+.++
T Consensus 151 Ps~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGR 183 (241)
T PTZ00393 151 PTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGR 183 (241)
T ss_pred CCHHHHHHHHHHHHHHHhcCCeEEEECCCCCCH
Confidence 445566666666776667889999999986554
No 282
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=24.06 E-value=4.6e+02 Score=22.40 Aligned_cols=68 Identities=15% Similarity=0.109 Sum_probs=40.5
Q ss_pred CChhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecccHHHHHH---HHHhcC
Q 025866 14 RTPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLE---IMKSVG 90 (247)
Q Consensus 14 ~~~~~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~~~l~---iLk~~~ 90 (247)
.+.+....+.+.+.+-.+-.| |+|..+.. +...+.+++..+.... ..+..+++-...++-. .++..+
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~i-Evg~~~~~-------~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g 80 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYI-EVGFPFAS-------EDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAG 80 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEE-EEEHCTSS-------HHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHhCCCEE-EEcccccC-------HHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhcc
Confidence 455566666667766556666 99954432 4455566666666655 6777788876655544 444555
Q ss_pred C
Q 025866 91 P 91 (247)
Q Consensus 91 ~ 91 (247)
.
T Consensus 81 ~ 81 (237)
T PF00682_consen 81 I 81 (237)
T ss_dssp S
T ss_pred C
Confidence 3
No 283
>PRK09045 N-ethylammeline chlorohydrolase; Provisional
Probab=24.05 E-value=6.2e+02 Score=23.96 Aligned_cols=29 Identities=10% Similarity=0.213 Sum_probs=22.3
Q ss_pred ceEEeecccHHHHHHHHHhcCCCCCcEEEEeCC
Q 025866 70 PASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYL 102 (247)
Q Consensus 70 pv~lH~~~a~~~~l~iLk~~~~~~~~~I~H~fs 102 (247)
.++.|+....++-++.+++.+. .+.||-+
T Consensus 254 ~~~~H~~~l~~~~~~~la~~g~----~i~~~P~ 282 (443)
T PRK09045 254 LIAVHMTQLTDAEIALLAETGC----SVVHCPE 282 (443)
T ss_pred eEEEEecCCCHHHHHHHHHcCC----eEEECHH
Confidence 3567999988888999998763 4678853
No 284
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=23.96 E-value=3.5e+02 Score=24.76 Aligned_cols=55 Identities=22% Similarity=0.289 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcCCceEEeecccHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCC
Q 025866 57 FRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGA 116 (247)
Q Consensus 57 f~~qL~lA~~~~lpv~lH~~~a~~~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~G~ 116 (247)
+.++++++.+.+.+++.=......++++.+++.+. .+++ .-++.+.++++.+.|+
T Consensus 76 ~~~~~~~~~~~~v~~v~~~~g~p~~~i~~lk~~g~----~v~~-~v~s~~~a~~a~~~Ga 130 (307)
T TIGR03151 76 VDELVDLVIEEKVPVVTTGAGNPGKYIPRLKENGV----KVIP-VVASVALAKRMEKAGA 130 (307)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcHHHHHHHHHcCC----EEEE-EcCCHHHHHHHHHcCC
Confidence 35678888888888665444444567788887753 2444 3357778888887775
No 285
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=23.79 E-value=1.2e+02 Score=26.91 Aligned_cols=42 Identities=17% Similarity=0.094 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHHHHHHcCCc--eEEeecc----------cHHHHHHHHHhcC
Q 025866 49 DFMDQVGVFRQQLELAKELKRP--ASIHCVR----------AFGDLLEIMKSVG 90 (247)
Q Consensus 49 ~~~~Q~~vf~~qL~lA~~~~lp--v~lH~~~----------a~~~~l~iLk~~~ 90 (247)
+...|.+.|+.+|+-|++.+.+ |+-|.+- ..+++.++++++.
T Consensus 194 ~~~~Ql~WL~~~L~~a~~~~~~v~I~~HiPp~~~~~~~~~~~~~~~~~ii~~y~ 247 (296)
T cd00842 194 DPAGQLQWLEDELQEAEQAGEKVWIIGHIPPGVNSYDTLENWSERYLQIINRYS 247 (296)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCcccccchHHHHHHHHHHHHHH
Confidence 4578999999999999876644 4567662 1345677888774
No 286
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=23.72 E-value=1.4e+02 Score=27.16 Aligned_cols=38 Identities=16% Similarity=0.350 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHcCC-ceEEeecccHHHHHHHHHhcCC
Q 025866 54 VGVFRQQLELAKELKR-PASIHCVRAFGDLLEIMKSVGP 91 (247)
Q Consensus 54 ~~vf~~qL~lA~~~~l-pv~lH~~~a~~~~l~iLk~~~~ 91 (247)
...+++.++.+++.+. ++++|+-+....+++.+.+.+.
T Consensus 219 ~P~~k~i~~~i~~~g~~~~~lH~cG~~~~~~~~l~~~g~ 257 (343)
T PF01208_consen 219 LPYLKKIIDAIKEAGKDPVILHICGNTTPILDDLADLGA 257 (343)
T ss_dssp HHHHHHHHHHHHHHETE-EEEEETTHG-GGHHHHHTSS-
T ss_pred HHHHHHHHHHHHHhCCCceEEEECCchHHHHHHHHhcCC
Confidence 4567888889999999 9999999999889999998864
No 287
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=23.69 E-value=5.3e+02 Score=23.07 Aligned_cols=88 Identities=20% Similarity=0.178 Sum_probs=49.3
Q ss_pred HHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHH-------------HHHHHHHHHH-HHcCCceEEeecc------
Q 025866 18 WFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQV-------------GVFRQQLELA-KELKRPASIHCVR------ 77 (247)
Q Consensus 18 ~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~-------------~vf~~qL~lA-~~~~lpv~lH~~~------ 77 (247)
.++.+..+. +..+-+| |+|++|..... .---.|. ++|+..-++. +..+.|+++=+--
T Consensus 28 ~~~~~~~l~-~~Gad~i-ElGiPfSDP~a-DGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~ 104 (258)
T PRK13111 28 SLEIIKALV-EAGADII-ELGIPFSDPVA-DGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQY 104 (258)
T ss_pred HHHHHHHHH-HCCCCEE-EECCCCCCCcc-cCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhhc
Confidence 344455554 4456566 99999985421 1223443 4455555555 3467887765532
Q ss_pred cHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHH
Q 025866 78 AFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELS 112 (247)
Q Consensus 78 a~~~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l 112 (247)
..+++++.+++.|. .++|+- .-+.++.+++.
T Consensus 105 G~e~f~~~~~~aGv--dGviip--DLp~ee~~~~~ 135 (258)
T PRK13111 105 GVERFAADAAEAGV--DGLIIP--DLPPEEAEELR 135 (258)
T ss_pred CHHHHHHHHHHcCC--cEEEEC--CCCHHHHHHHH
Confidence 56678888888764 234442 22445555544
No 288
>PF02669 KdpC: K+-transporting ATPase, c chain; InterPro: IPR003820 Kdp, the high affinity ATP-driven K+-transport system of Escherichia coli, is a complex of the membrane-bound subunits KdpA, KdpB, KdpC and the small peptide KdpF. KdpC forms strong interactions with the KdpA subunit, serving to assemble and stabilise the Kdp complex []. It has been suggested that KdpC could be one of the connecting links between the energy providing subunit KdpB and the K+- transporting subunit KdpA []. The K+ transport system actively transports K+ ions via ATP hydrolysis.; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0016020 membrane
Probab=23.61 E-value=96 Score=26.87 Aligned_cols=32 Identities=22% Similarity=0.203 Sum_probs=26.5
Q ss_pred chhHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Q 025866 203 PANIHNVLDYVASLLDMTKEELAELSYRNAIR 234 (247)
Q Consensus 203 P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~ 234 (247)
|..-..=+..||+.+|++.++|.+++.+|+.+
T Consensus 134 ~~aA~~Qv~RVA~argl~~~~v~~li~~~t~~ 165 (188)
T PF02669_consen 134 PAAALIQVPRVAKARGLSEEEVEALIDKHTEG 165 (188)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcC
Confidence 44555556689999999999999999999875
No 289
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=23.58 E-value=88 Score=31.09 Aligned_cols=41 Identities=10% Similarity=-0.022 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEEeec------------------ccHHHHHHHHHhcC
Q 025866 50 FMDQVGVFRQQLELAKELKRPASIHCV------------------RAFGDLLEIMKSVG 90 (247)
Q Consensus 50 ~~~Q~~vf~~qL~lA~~~~lpv~lH~~------------------~a~~~~l~iLk~~~ 90 (247)
-+.|.++++++|+.+.+-...|++|.+ ....+++++|+++.
T Consensus 321 ~eeQL~WLeqeLa~a~~k~VVVf~HHPp~s~g~~~~Dp~~pg~~~~n~~eLldLL~~yp 379 (496)
T TIGR03767 321 GQTQFKWIKDTLRASSDTLFVLFSHHTSWSMVNELTDPVDPGEKRHLGTELVSLLLEHP 379 (496)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCccccccccccccccccccCHHHHHHHHhcCC
Confidence 389999999999976544455678874 11357889998873
No 290
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=23.57 E-value=87 Score=22.44 Aligned_cols=13 Identities=31% Similarity=0.820 Sum_probs=9.4
Q ss_pred CCceEEeecccHH
Q 025866 68 KRPASIHCVRAFG 80 (247)
Q Consensus 68 ~lpv~lH~~~a~~ 80 (247)
+.||+|||..+.+
T Consensus 39 ~~pvlVHC~~G~g 51 (105)
T smart00404 39 SGPVVVHCSAGVG 51 (105)
T ss_pred CCCEEEEeCCCCC
Confidence 5688888886543
No 291
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=23.57 E-value=87 Score=22.44 Aligned_cols=13 Identities=31% Similarity=0.820 Sum_probs=9.4
Q ss_pred CCceEEeecccHH
Q 025866 68 KRPASIHCVRAFG 80 (247)
Q Consensus 68 ~lpv~lH~~~a~~ 80 (247)
+.||+|||..+.+
T Consensus 39 ~~pvlVHC~~G~g 51 (105)
T smart00012 39 SGPVVVHCSAGVG 51 (105)
T ss_pred CCCEEEEeCCCCC
Confidence 5688888886543
No 292
>PRK12679 cbl transcriptional regulator Cbl; Reviewed
Probab=23.52 E-value=3.8e+02 Score=23.85 Aligned_cols=55 Identities=9% Similarity=0.111 Sum_probs=34.9
Q ss_pred cCCceEEeecccH-H-HHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCCeeeecccc
Q 025866 67 LKRPASIHCVRAF-G-DLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFL 124 (247)
Q Consensus 67 ~~lpv~lH~~~a~-~-~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~G~~~Si~~~i 124 (247)
.+.|.+....+.. . .+-+.+...+.. ....+.+ .+.+.+..++..|..++|-+..
T Consensus 190 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~s~~~~~~~v~~g~Gi~~lp~~ 246 (316)
T PRK12679 190 AKWPLITYRQGITGRSRIDDAFARKGLL-ADIVLSA--QDSDVIKTYVALGLGIGLVAEQ 246 (316)
T ss_pred hCCCeEEecCCCcHHHHHHHHHHHcCCC-ceEEEEe--ccHHHHHHHHHcCCcEEEeccc
Confidence 4567776655432 2 344566776643 2333333 5788999999999888887753
No 293
>PRK13998 potassium-transporting ATPase subunit C; Provisional
Probab=23.48 E-value=94 Score=26.90 Aligned_cols=32 Identities=16% Similarity=0.131 Sum_probs=26.8
Q ss_pred chhHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Q 025866 203 PANIHNVLDYVASLLDMTKEELAELSYRNAIR 234 (247)
Q Consensus 203 P~~l~~v~~~iA~~~~~s~e~l~~~~~~N~~~ 234 (247)
|..-..=+..+|+.+|++.++|.+++.+|...
T Consensus 133 p~aA~~Qv~RVA~argl~~~~v~~LV~~~t~~ 164 (186)
T PRK13998 133 VENALKQAPRIADARHVSTSRVADLIQHRKQR 164 (186)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHhccc
Confidence 55555666689999999999999999999874
No 294
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=23.45 E-value=97 Score=25.46 Aligned_cols=82 Identities=16% Similarity=0.078 Sum_probs=45.6
Q ss_pred HHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecccHHHHHHHHHhcCC---CCC-
Q 025866 19 FSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGP---FPD- 94 (247)
Q Consensus 19 l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a~~~~l~iLk~~~~---~~~- 94 (247)
.+...++++++..+. ||=+. +.|.++ -.+....+.|+..|.....-.=.+.++.++. ...
T Consensus 27 ~~qvk~L~~~~~~~l-----lDVRe-----peEfk~------gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~ 90 (136)
T KOG1530|consen 27 VEQVKNLLQHPDVVL-----LDVRE-----PEEFKQ------GHIPASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDK 90 (136)
T ss_pred HHHHHHHhcCCCEEE-----EeecC-----HHHhhc------cCCcceEeccccccccccccCCHHHHHHhcccCCCCCC
Confidence 567777777765333 34332 222221 2226678888888887654434455555542 222
Q ss_pred cEEEEeCCCC--HHHHHHHHHCCC
Q 025866 95 GVIIHSYLGS--AEMVPELSKLGA 116 (247)
Q Consensus 95 ~~I~H~fsGs--~~~~~~~l~~G~ 116 (247)
.+||+|-+|. .+--+.+..+||
T Consensus 91 eiIf~C~SG~Rs~~A~~~l~s~Gy 114 (136)
T KOG1530|consen 91 EIIFGCASGVRSLKATKILVSAGY 114 (136)
T ss_pred cEEEEeccCcchhHHHHHHHHcCc
Confidence 5789999984 222233445565
No 295
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=23.42 E-value=3.7e+02 Score=25.52 Aligned_cols=97 Identities=19% Similarity=0.303 Sum_probs=57.8
Q ss_pred ChhHHHHHHHHhhcCCceEEEeecCCCCCCC---CCCCHHHHHHHHHHHHHHHHHcC---------CceEEeecccHHHH
Q 025866 15 TPNWFSTLKEFFEITPAAAVGEIGLDKGSKG---REIDFMDQVGVFRQQLELAKELK---------RPASIHCVRAFGDL 82 (247)
Q Consensus 15 ~~~~l~~l~~~l~~~~~~aIGEIGLD~~~~~---~~~~~~~Q~~vf~~qL~lA~~~~---------lpv~lH~~~a~~~~ 82 (247)
.++.++.+.+++. +..+=|| |||.-.... ...++-.--+=|.+..++|+++| ||+.|--..|.+|+
T Consensus 149 ~eE~l~e~~~il~-gk~~Eva-IGLETanD~ire~sINKGftF~df~~A~~~ir~~g~~vktYlllKP~FlSE~eAI~D~ 226 (358)
T COG1244 149 REERLEEITEILE-GKIVEVA-IGLETANDKIREDSINKGFTFEDFVRAAEIIRNYGAKVKTYLLLKPPFLSEKEAIEDV 226 (358)
T ss_pred CHHHHHHHHHhhC-CceEEEE-EecccCcHHHHHHhhhcCCcHHHHHHHHHHHHHcCCceeEEEEecccccChHHHHHHH
Confidence 3567888888774 4455566 788755321 00011122345778888888877 46777777788888
Q ss_pred HHHHHhcCCCCCcE-----EEEeCCCCHHHHHHHHHCCCe
Q 025866 83 LEIMKSVGPFPDGV-----IIHSYLGSAEMVPELSKLGAY 117 (247)
Q Consensus 83 l~iLk~~~~~~~~~-----I~H~fsGs~~~~~~~l~~G~~ 117 (247)
+.-++...+.-..+ -+|- -..++.+...|.|
T Consensus 227 i~Si~~~~~~~d~iSinptnVqK----gTlvE~lw~~g~Y 262 (358)
T COG1244 227 ISSIVAAKPGTDTISINPTNVQK----GTLVEKLWRRGLY 262 (358)
T ss_pred HHHHHHhccCCCeEEecccccch----hhHHHHHHHcCCC
Confidence 87666543222222 2332 2366777888887
No 296
>PF01979 Amidohydro_1: Amidohydrolase family; InterPro: IPR006680 This group of enzymes represents a large metal dependent hydrolase superfamily []. The family includes adenine deaminase (3.5.4.2 from EC) that hydrolyses adenine to form hypoxanthine and ammonia. The adenine deaminase reaction is important for adenine utilization as a purine and also as a nitrogen source []. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases (3.5.1.25 from EC). These enzymes catalyse the reaction: N-acetyl-D-glucosamine 6-phosphate + H2O = D-glucosamine 6-phosphate + acetateThis family includes dihydroorotase and urease which belong to MEROPS peptidase family M38 (beta-aspartyl dipeptidase, clan MJ), where they are classified as non-peptidase homologs. ; GO: 0016787 hydrolase activity; PDB: 1O12_A 2KAU_C 1FWD_C 1A5M_C 1FWC_C 1FWI_C 1EJV_C 1FWH_C 1A5L_C 1KRA_C ....
Probab=23.33 E-value=2.8e+02 Score=24.31 Aligned_cols=68 Identities=28% Similarity=0.345 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHH------cCCceEEeecccHHH-----------HHHHHHhcCCC------CCcEEEEeCCCCHHHHHHH
Q 025866 55 GVFRQQLELAKE------LKRPASIHCVRAFGD-----------LLEIMKSVGPF------PDGVIIHSYLGSAEMVPEL 111 (247)
Q Consensus 55 ~vf~~qL~lA~~------~~lpv~lH~~~a~~~-----------~l~iLk~~~~~------~~~~I~H~fsGs~~~~~~~ 111 (247)
+-++..++++.+ .++|+.+|....... .++-+...+.. ...++.|+..-+.+.+..+
T Consensus 144 ~~l~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~l 223 (333)
T PF01979_consen 144 EELREAVELAKEFLAAEKLGIPVHIHVAEGTGEVEAMTHLYGMSPIEALDHLGLLEEAIDDGVDLIAHGTHLSDEEIELL 223 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHEEEEEESSSHHHHCCCHHHHSHHHHHHHHHHHSCHHHHHHHCEEEEEHTTSEHHHHHHH
T ss_pred hhhhhHHhhhhhHHHHHhhcccceeeeccCcccceeEeeeeeccchhhhccchhhhhhcccccceeeccccCCHHHhhhh
Confidence 556777777777 399999999998776 12222111111 1236779998888877777
Q ss_pred HHCCCeeeecc
Q 025866 112 SKLGAYFSFSG 122 (247)
Q Consensus 112 l~~G~~~Si~~ 122 (247)
.+.+.+....+
T Consensus 224 ~~~~~~~~~~~ 234 (333)
T PF01979_consen 224 KETGIGIIHCP 234 (333)
T ss_dssp HHHTHEEEEEH
T ss_pred hccCCcccccc
Confidence 77787776554
No 297
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=23.33 E-value=91 Score=22.46 Aligned_cols=27 Identities=33% Similarity=0.493 Sum_probs=20.4
Q ss_pred EEEEeCCCCHHHHHHHHHCC----Ceeeecc
Q 025866 96 VIIHSYLGSAEMVPELSKLG----AYFSFSG 122 (247)
Q Consensus 96 ~I~H~fsGs~~~~~~~l~~G----~~~Si~~ 122 (247)
+++..|..+.+++..+.+.| ||||+|.
T Consensus 30 ~~iD~~~~~~~~I~~L~~~G~~vicY~s~Gs 60 (74)
T PF03537_consen 30 VVIDLFDFSKEEIARLKAQGKKVICYFSIGS 60 (74)
T ss_dssp EEE-SBS--HHHHHHHHHTT-EEEEEEESSE
T ss_pred EEECCccCCHHHHHHHHHCCCEEEEEEeCce
Confidence 57788888899999999888 7999885
No 298
>cd08600 GDPD_EcGlpQ_like Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), GlpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ, which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GP
Probab=23.32 E-value=3.5e+02 Score=24.86 Aligned_cols=59 Identities=15% Similarity=0.261 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHc------CCceEEeecc----------cHHHHHHHHHhcCCC--CCcEEEEeCCCCHHHHHHHHH
Q 025866 53 QVGVFRQQLELAKEL------KRPASIHCVR----------AFGDLLEIMKSVGPF--PDGVIIHSYLGSAEMVPELSK 113 (247)
Q Consensus 53 Q~~vf~~qL~lA~~~------~lpv~lH~~~----------a~~~~l~iLk~~~~~--~~~~I~H~fsGs~~~~~~~l~ 113 (247)
+.--|++.|++++.+ +..+.|-... ....+++++++++.. ..++++.+| +.+.++.+.+
T Consensus 114 ~IptL~evl~~~~~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~v~i~SF--~~~~L~~~~~ 190 (318)
T cd08600 114 KIHTLEEEIELIQGLNKSTGKNVGIYPEIKAPWFHHQEGKDIAAATLEVLKKYGYTSKNDKVYLQTF--DPNELKRIKN 190 (318)
T ss_pred ccCCHHHHHHHHHHhhhhcCCcceEEEeecCchhhhhccccHHHHHHHHHHHcCCCCCCCeEEEEeC--CHHHHHHHHH
Confidence 345677777777653 4556666553 134678899988753 236899999 5778777764
No 299
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=23.20 E-value=6.4e+02 Score=23.78 Aligned_cols=88 Identities=17% Similarity=0.193 Sum_probs=49.2
Q ss_pred eeeecccccCCCChhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHH----HHHHHHHHcC----CceEEe
Q 025866 3 WVCFIFRFVQERTPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFR----QQLELAKELK----RPASIH 74 (247)
Q Consensus 3 ~~g~hP~~~~~~~~~~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~----~qL~lA~~~~----lpv~lH 74 (247)
-+|+-|++....+++.++.+.++..+..+ .++-+- .........+.+ +-++.-.+++ .-+.+|
T Consensus 184 ~~~~~p~~~~~~~~~~~~~~~~l~~~~~~------~v~iH~---~E~~~e~~~~~~~~g~~~~~~~~~~g~l~~~~~~~H 254 (421)
T COG0402 184 VVGLAPHFPYTVSPELLESLDELARKYGL------PVHIHL---AETLDEVERVLEPYGARPVERLDLLGLLGSHTLLAH 254 (421)
T ss_pred eEEEecCCCCCCCHHHHHHHHHHHhcCCC------ceEEEe---cCcHHHHHHHHhhcCCCHHHHHHHcCCCCCCeEEEE
Confidence 35667777666677777777777664321 111111 111122222222 2222222333 458899
Q ss_pred ecccHHHHHHHHHhcCCCCCcEEEEeCCC
Q 025866 75 CVRAFGDLLEIMKSVGPFPDGVIIHSYLG 103 (247)
Q Consensus 75 ~~~a~~~~l~iLk~~~~~~~~~I~H~fsG 103 (247)
|....++-++++++.+. .|.||-..
T Consensus 255 ~~~~~~~e~~~l~~~g~----~v~~cP~s 279 (421)
T COG0402 255 CVHLSEEELELLAESGA----SVVHCPRS 279 (421)
T ss_pred eccCCHHHHHHHhhCCC----eEEECcch
Confidence 99999998999987653 57899743
No 300
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=22.29 E-value=5.9e+02 Score=23.08 Aligned_cols=106 Identities=18% Similarity=0.230 Sum_probs=58.3
Q ss_pred eeecccccCCCChhHHHHHHHHhhcCCceEEEeecCCCCCCC--CCCCHHHHHHHHHHHHHHHHHcCCceEEeecc----
Q 025866 4 VCFIFRFVQERTPNWFSTLKEFFEITPAAAVGEIGLDKGSKG--REIDFMDQVGVFRQQLELAKELKRPASIHCVR---- 77 (247)
Q Consensus 4 ~g~hP~~~~~~~~~~l~~l~~~l~~~~~~aIGEIGLD~~~~~--~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~---- 77 (247)
++.+|..+ +++.++.|.++...+-...| |+|++-.... ....+.+-.+-+.+.++.+++.+..+..|.--
T Consensus 114 i~trpd~l---~~e~l~~L~~l~~~G~~~~i-~lGlQS~~d~~L~~i~Rg~t~~~~~~ai~~l~~~gi~v~~~lI~GlPg 189 (302)
T TIGR01212 114 VGTRPDCV---PDEVLDLLAEYVERGYEVWV-ELGLQTAHDKTLKKINRGHDFACYVDAVKRARKRGIKVCSHVILGLPG 189 (302)
T ss_pred EEecCCcC---CHHHHHHHHHhhhCCceEEE-EEccCcCCHHHHHHHcCcChHHHHHHHHHHHHHcCCEEEEeEEECCCC
Confidence 34455555 44556777766443221334 7899876421 00111233455788999999999999998652
Q ss_pred -cHH---HHHHHHHhcCCCCCcEEE---EeCCCCHHHHHHHHHCCCe
Q 025866 78 -AFG---DLLEIMKSVGPFPDGVII---HSYLGSAEMVPELSKLGAY 117 (247)
Q Consensus 78 -a~~---~~l~iLk~~~~~~~~~I~---H~fsGs~~~~~~~l~~G~~ 117 (247)
..+ ++++.+.+.++ ..+-+ |-+.|++ +.+....|-|
T Consensus 190 et~e~~~~t~~~l~~l~~--d~i~i~~l~~~pgT~--L~~~~~~g~~ 232 (302)
T TIGR01212 190 EDREEMMETAKIVSLLDV--DGIKIHPLHVVKGTK--MAKMYEKGEL 232 (302)
T ss_pred CCHHHHHHHHHHHHhcCC--CEEEEEEEEecCCCH--HHHHHHcCCC
Confidence 223 44556666654 23333 4456653 3344455654
No 301
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=22.28 E-value=6.5e+02 Score=23.53 Aligned_cols=39 Identities=28% Similarity=0.320 Sum_probs=29.0
Q ss_pred HHHHHHcC----CceEEeecccHHHHHHHHHhcCCCCCcEEEEeCCC
Q 025866 61 LELAKELK----RPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLG 103 (247)
Q Consensus 61 L~lA~~~~----lpv~lH~~~a~~~~l~iLk~~~~~~~~~I~H~fsG 103 (247)
++...+++ ..+..||....++-+++|++.+. .|.||-..
T Consensus 220 v~~l~~~g~L~~~~~~~H~~~l~~~~~~~l~~~g~----~v~~~P~s 262 (381)
T cd01312 220 IDFLDMLGGLGTRVSFVHCVYANLEEAEILASRGA----SIALCPRS 262 (381)
T ss_pred HHHHHHcCCCCCCcEEEECCcCCHHHHHHHHHcCC----eEEECcch
Confidence 34445555 46789999999999999999864 57798753
No 302
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=22.19 E-value=3e+02 Score=24.64 Aligned_cols=106 Identities=14% Similarity=0.029 Sum_probs=54.8
Q ss_pred CChhHHHHHHHHhhcCCceEEEeecCCCCCCCC--CCCHHHHHHHHHHHHHHHHHcCCceEEeeccc--HHHHHHHHHhc
Q 025866 14 RTPNWFSTLKEFFEITPAAAVGEIGLDKGSKGR--EIDFMDQVGVFRQQLELAKELKRPASIHCVRA--FGDLLEIMKSV 89 (247)
Q Consensus 14 ~~~~~l~~l~~~l~~~~~~aIGEIGLD~~~~~~--~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a--~~~~l~iLk~~ 89 (247)
++.+....+.+.|.+-.+-.| |+|..-..... ....-...+.+++..+..+ .+.++..+++.. ..+.++...+.
T Consensus 17 f~~~~~~~ia~~L~~~GVd~I-EvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a~~~ 94 (266)
T cd07944 17 FGDEFVKAIYRALAAAGIDYV-EIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPASGS 94 (266)
T ss_pred CCHHHHHHHHHHHHHCCCCEE-EeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHHhcC
Confidence 466777888888888777666 99975432100 0000111345666665543 356777776654 33444444454
Q ss_pred CCCCCcEEEEeCCCCHHHH----HHHHHCCCeeeeccc
Q 025866 90 GPFPDGVIIHSYLGSAEMV----PELSKLGAYFSFSGF 123 (247)
Q Consensus 90 ~~~~~~~I~H~fsGs~~~~----~~~l~~G~~~Si~~~ 123 (247)
+..-.++.++. ...+.+ +.+.+.|+.+.++..
T Consensus 95 gv~~iri~~~~--~~~~~~~~~i~~ak~~G~~v~~~~~ 130 (266)
T cd07944 95 VVDMIRVAFHK--HEFDEALPLIKAIKEKGYEVFFNLM 130 (266)
T ss_pred CcCEEEEeccc--ccHHHHHHHHHHHHHCCCeEEEEEE
Confidence 43211222222 133333 334457887777753
No 303
>cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively.
Probab=22.03 E-value=3.8e+02 Score=24.53 Aligned_cols=58 Identities=22% Similarity=0.185 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHc------CCceEEeecc-----------cHHHHHHHHHhcCCCC--CcEEEEeCCCCHHHHHHHHHC
Q 025866 55 GVFRQQLELAKEL------KRPASIHCVR-----------AFGDLLEIMKSVGPFP--DGVIIHSYLGSAEMVPELSKL 114 (247)
Q Consensus 55 ~vf~~qL~lA~~~------~lpv~lH~~~-----------a~~~~l~iLk~~~~~~--~~~I~H~fsGs~~~~~~~l~~ 114 (247)
--|++.|++++.+ +..+.|=... ..+.+++++++++... .+++|.+| +.+.++.+.+.
T Consensus 114 ptL~Evl~~~~~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~v~i~SF--d~~~L~~~~~~ 190 (309)
T cd08602 114 PTFEEIIALAKAASAATGRTVGIYPEIKHPTYFNAPLGLPMEDKLLETLKKYGYTGKKAPVFIQSF--EVTNLKYLRNK 190 (309)
T ss_pred CCHHHHHHHHHhhhhcccccceeEEeecCchhcccccCCCHHHHHHHHHHHcCCCCCCCCEEEECC--CHHHHHHHHhh
Confidence 4566666666655 4455655542 2346889999987532 47899999 56777777664
No 304
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=21.99 E-value=81 Score=23.78 Aligned_cols=23 Identities=17% Similarity=0.112 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHcCCceEEeec
Q 025866 54 VGVFRQQLELAKELKRPASIHCV 76 (247)
Q Consensus 54 ~~vf~~qL~lA~~~~lpv~lH~~ 76 (247)
..-..+..++|+++++++++|+-
T Consensus 32 it~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 32 ITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp HHHHHHHHHHHHHTT-EEEEBSS
T ss_pred HHHHHHHHHHHHHhCCCEEecCC
Confidence 35567889999999999999997
No 305
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=21.97 E-value=3.5e+02 Score=24.99 Aligned_cols=62 Identities=21% Similarity=0.184 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCCc-eEEeecccHHHHHHHHHhcCCCCCcEEE---EeCC-------CCHHHHHHHHHCC-Ceeeecc
Q 025866 57 FRQQLELAKELKRP-ASIHCVRAFGDLLEIMKSVGPFPDGVII---HSYL-------GSAEMVPELSKLG-AYFSFSG 122 (247)
Q Consensus 57 f~~qL~lA~~~~lp-v~lH~~~a~~~~l~iLk~~~~~~~~~I~---H~fs-------Gs~~~~~~~l~~G-~~~Si~~ 122 (247)
.+..++++++++.. ++.|+-.+ .++++.|++.+.. +++ .++. .....+.++.+.| +-++|+.
T Consensus 205 i~~~l~~~~e~g~~~~i~H~~~~-~~~~~~la~~gv~---v~~~P~~~~~~~~~~~~~~~~~~~~l~~aGGv~valgs 278 (359)
T cd01309 205 ILTAIRIAKEFGIKITIEHGAEG-YKLADELAKHGIP---VIYGPTLTLPKKVEEVNDAIDTNAYLLKKGGVAFAISS 278 (359)
T ss_pred HHHHHHHHHHcCCCEEEECchhH-HHHHHHHHHcCCC---EEECccccccccHHHhhcchhhHHHHHHcCCceEEEEC
Confidence 56677888999987 66799877 6677888887531 221 1111 1234556777887 9888874
No 306
>PLN02303 urease
Probab=21.83 E-value=69 Score=33.83 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHcCCceEEeecc
Q 025866 54 VGVFRQQLELAKELKRPASIHCVR 77 (247)
Q Consensus 54 ~~vf~~qL~lA~~~~lpv~lH~~~ 77 (247)
...+.+.++.|+++++||.+|+..
T Consensus 496 pelL~raLe~AkelGVpVaIHAEd 519 (837)
T PLN02303 496 PAAIDNCLDVAEEYDIQVTIHTDT 519 (837)
T ss_pred HHHHHHHHHHHHHcCCEEEEecCc
Confidence 468999999999999999999877
No 307
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=21.80 E-value=3.3e+02 Score=21.14 Aligned_cols=45 Identities=11% Similarity=0.059 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHcCCceEEeecccHHHHHHHHHhcCCCCCcEEEEeC
Q 025866 55 GVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSY 101 (247)
Q Consensus 55 ~vf~~qL~lA~~~~lpv~lH~~~a~~~~l~iLk~~~~~~~~~I~H~f 101 (247)
+.....++.|.++++|+++=+-+-.++-++.|++.... ..++++.
T Consensus 78 ~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~--~~vl~a~ 122 (124)
T PF01113_consen 78 DAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAKK--IPVLIAP 122 (124)
T ss_dssp HHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTT--SEEEE-S
T ss_pred HHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhcc--CCEEEeC
Confidence 67778999999999999999988888878888876432 3566653
No 308
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=21.61 E-value=2.3e+02 Score=26.86 Aligned_cols=83 Identities=17% Similarity=0.087 Sum_probs=0.0
Q ss_pred EeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeecc--cHH----HHHHHHHhcCCCCCcEEEEeCCCCHHHH
Q 025866 35 GEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVR--AFG----DLLEIMKSVGPFPDGVIIHSYLGSAEMV 108 (247)
Q Consensus 35 GEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~--a~~----~~l~iLk~~~~~~~~~I~H~fsGs~~~~ 108 (247)
+|.|||--+-+...+-+.-.+-+...|.+|+++++-|=+-.+- ..+ ++.+.+.+++. .-+-+-=..-|..-.
T Consensus 131 ~eAGLDEIRfHp~~~~~~~~e~~i~~l~~A~~~g~dvG~EiPaipg~e~~i~e~~~~~~~~~~--~FlNiNELE~sE~N~ 208 (353)
T COG2108 131 AEAGLDEIRFHPPRPGSKSSEKYIENLKIAKKYGMDVGVEIPAIPGEEEAILEFAKALDENGL--DFLNINELEFSENNY 208 (353)
T ss_pred HhCCCCeEEecCCCccccccHHHHHHHHHHHHhCccceeecCCCcchHHHHHHHHHHHHhccc--ceeeeeeeeeccchH
Q ss_pred HHHHHCCCeee
Q 025866 109 PELSKLGAYFS 119 (247)
Q Consensus 109 ~~~l~~G~~~S 119 (247)
..+++.|++++
T Consensus 209 ~~l~~~gy~~~ 219 (353)
T COG2108 209 ENLLERGYKIS 219 (353)
T ss_pred HHHHhcCceec
No 309
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=21.61 E-value=2.8e+02 Score=24.34 Aligned_cols=48 Identities=21% Similarity=0.282 Sum_probs=33.7
Q ss_pred HHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeec
Q 025866 19 FSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCV 76 (247)
Q Consensus 19 l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~ 76 (247)
.+.+.+++.+-.++.|| +|+-. +...+.+...++.++++++||++-..
T Consensus 40 ~e~~~~~l~~~d~vvi~-~G~l~---------~~~~~~i~~~~~~~~~~~~pvVlDp~ 87 (242)
T cd01170 40 PEEVEELAKIAGALVIN-IGTLT---------SEQIEAMLKAGKAANQLGKPVVLDPV 87 (242)
T ss_pred HHHHHHHHHHcCcEEEe-CCCCC---------hHHHHHHHHHHHHHHhcCCCEEEccc
Confidence 45566666666778886 77652 12345666777889999999999765
No 310
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=21.43 E-value=4.1e+02 Score=24.84 Aligned_cols=54 Identities=15% Similarity=0.222 Sum_probs=38.5
Q ss_pred HHHHHHHHHHcCCceEEeecccHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCCC
Q 025866 57 FRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGA 116 (247)
Q Consensus 57 f~~qL~lA~~~~lpv~lH~~~a~~~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~G~ 116 (247)
+..|++++.+.+.|+++=.-..-.. .+.|++.|. +++.|. +|...++++.+.|+
T Consensus 71 ~~~~l~vi~e~~v~~V~~~~G~P~~-~~~lk~~Gi---~v~~~v--~s~~~A~~a~~~Ga 124 (320)
T cd04743 71 RAAQLAVVRAIKPTFALIAGGRPDQ-ARALEAIGI---STYLHV--PSPGLLKQFLENGA 124 (320)
T ss_pred hHHHHHHHHhcCCcEEEEcCCChHH-HHHHHHCCC---EEEEEe--CCHHHHHHHHHcCC
Confidence 5678999999998877655444444 588888764 334344 57889999998875
No 311
>PF04183 IucA_IucC: IucA / IucC family; InterPro: IPR007310 Bacteria solve the iron supply problem caused by the insolubility of Fe(3+) by synthesizing iron-complexing compounds, called siderophores, and by using iron sources of their hosts, such as haem and iron bound to transferrin and lactoferrin. Escherichia coli, as an example of Gram-negative bacteria, forms sophisticated Fe(3+)-siderophore and haem transport systems across the outer membrane. IucA and IucC catalyse discrete steps in biosynthesis of the siderophore aerobactin from N epsilon-acetyl-N epsilon-hydroxylysine and citrate []. This entry represents the N-terminal domain of both IucA/IucC. The C-terminal domain if this family of proteins is related to the FhuF iron transporter proteins.; GO: 0015343 siderophore transmembrane transporter activity, 0019290 siderophore biosynthetic process; PDB: 3TO3_B 2X0Q_A 2X0O_A 2X0P_A 2W02_B 3FFE_B 2W04_B 2W03_B 2X3K_B 2X3J_B ....
Probab=21.38 E-value=28 Score=30.85 Aligned_cols=38 Identities=13% Similarity=-0.044 Sum_probs=29.2
Q ss_pred eeeecccccCCCChhHHHHHHHHhhcCCceEEEeecCCCCC
Q 025866 3 WVCFIFRFVQERTPNWFSTLKEFFEITPAAAVGEIGLDKGS 43 (247)
Q Consensus 3 ~~g~hP~~~~~~~~~~l~~l~~~l~~~~~~aIGEIGLD~~~ 43 (247)
.+-+|||....... ..+.+++.++.++-+|+.|..++.
T Consensus 97 llPvHPWQ~~~~l~---~~~~~~i~~g~li~lg~~~~~~~p 134 (251)
T PF04183_consen 97 LLPVHPWQWEHLLP---PEFAEEIADGRLIPLGESGDPWRP 134 (251)
T ss_dssp EEEE-HHHHHHTTT---HHCHHHHHTTSEEEEEEEEEEEEE
T ss_pred EEeecHHHHHHHhh---HHHHHHHhCCCEEECCCCCcceec
Confidence 35689999876543 467778888889999999999874
No 312
>PRK09248 putative hydrolase; Validated
Probab=21.23 E-value=1.5e+02 Score=25.82 Aligned_cols=54 Identities=20% Similarity=0.202 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCCceEE----eecc---cHHHHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHCC
Q 025866 58 RQQLELAKELKRPASI----HCVR---AFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLG 115 (247)
Q Consensus 58 ~~qL~lA~~~~lpv~l----H~~~---a~~~~l~iLk~~~~~~~~~I~H~fsGs~~~~~~~l~~G 115 (247)
.+.+++|.++|+|+++ |.+. ...+.++++++.|..+. -+.+- +.+++.++++.+
T Consensus 175 ~~~~~~~~~~g~~~~~gSDAH~~~~vg~~~~~~~~~~~~g~~~~--~~~~~--~~~~~~~~~~~~ 235 (246)
T PRK09248 175 RAIAALCKKAGVWVALGSDAHIAFDIGNFEEALKILDEVGFPEE--RILNV--SPRRLLDFLESR 235 (246)
T ss_pred HHHHHHHHHcCCeEEEeCCCCChhhhccHHHHHHHHHHcCCCHH--HeeeC--CHHHHHHHHHHc
Confidence 4556677777777766 5543 34556677777764322 12333 566666666543
No 313
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=21.19 E-value=2.2e+02 Score=21.85 Aligned_cols=50 Identities=12% Similarity=0.236 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHcCCceEEeec---------ccHHHHHHHHHhcCCCCCcEEEEeCCC
Q 025866 54 VGVFRQQLELAKELKRPASIHCV---------RAFGDLLEIMKSVGPFPDGVIIHSYLG 103 (247)
Q Consensus 54 ~~vf~~qL~lA~~~~lpv~lH~~---------~a~~~~l~iLk~~~~~~~~~I~H~fsG 103 (247)
..++...=...++-+.|+.+|.. ++.-+++++|+++......+.++||-.
T Consensus 28 ~Pi~~wl~~Yl~~~~~~i~~~~~L~YfNTSSsk~l~~i~~~Le~~~~~g~~V~v~Wyyd 86 (99)
T PF09345_consen 28 QPILDWLEAYLAEPNKPITFNFKLSYFNTSSSKALMDIFDLLEDAAQKGGKVTVNWYYD 86 (99)
T ss_pred HHHHHHHHHHHhCCCCcEEEEEEEEEEecHhHHHHHHHHHHHHHHHhcCCcEEEEEEEC
Confidence 33444433444456788888876 234567777777643345678888854
No 314
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=21.06 E-value=2.4e+02 Score=25.93 Aligned_cols=67 Identities=10% Similarity=-0.079 Sum_probs=37.1
Q ss_pred cccCCCChhHHHHHHHHhhcCCceEEEeecCCCCCCCC---CCCHHHHHHHHHHHHHHHHHcCCc----eEEeecc
Q 025866 9 RFVQERTPNWFSTLKEFFEITPAAAVGEIGLDKGSKGR---EIDFMDQVGVFRQQLELAKELKRP----ASIHCVR 77 (247)
Q Consensus 9 ~~~~~~~~~~l~~l~~~l~~~~~~aIGEIGLD~~~~~~---~~~~~~Q~~vf~~qL~lA~~~~lp----v~lH~~~ 77 (247)
|.......+.++.+.+++++..+...-= =+|+..-. ....+.-.+.+..++++|..+|.+ |+||.=.
T Consensus 83 w~~~~~~~~~~~~~g~~~~~~~irls~H--p~y~inL~S~~~ev~e~Si~~L~~~~~~~~~lG~~~~~~vViHpG~ 156 (303)
T PRK02308 83 WDYIEPFKEELREIGEFIKEHNIRLSFH--PDQFVVLNSPKPEVVENSIKDLEYHAKLLDLMGIDDSSKINIHVGG 156 (303)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCeecc--ChhhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCc
Confidence 4334445667778888776643311111 11211100 112345577888888888888888 7788543
No 315
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=20.85 E-value=5.9e+02 Score=22.51 Aligned_cols=92 Identities=15% Similarity=0.150 Sum_probs=48.1
Q ss_pred CCChhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCc-eEEeecc--cHHHHHHHHHhc
Q 025866 13 ERTPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRP-ASIHCVR--AFGDLLEIMKSV 89 (247)
Q Consensus 13 ~~~~~~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lp-v~lH~~~--a~~~~l~iLk~~ 89 (247)
++..+.+..+.++..+-++..+.+.+..... .....-+...+.+|.++++- +.++... ...++++.+++.
T Consensus 177 SF~~~~l~~l~~~~p~~~~~~L~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~ 249 (282)
T cd08605 177 SFDPDAAVLLRALQSLYPVMFLTDCGPYTHN-------DPRRNSIEAAIQVALEGGLQGIVSEVKVLLRNPTAVSLVKAS 249 (282)
T ss_pred eCCHHHHHHHHhcCccCCEEEEecCCCcccc-------CchhhhHHHHHHHHHHcCCceEEecHHHhhcCcHHHHHHHHc
Confidence 3455555555555444444444433321100 01112223355666666554 3333221 245677777776
Q ss_pred CCCCCcEEEEeCC---CCHHHHHHHHHCCC
Q 025866 90 GPFPDGVIIHSYL---GSAEMVPELSKLGA 116 (247)
Q Consensus 90 ~~~~~~~I~H~fs---Gs~~~~~~~l~~G~ 116 (247)
| .-++.|+ .+.+.+++++++|+
T Consensus 250 G-----l~v~vWTv~~n~~~~~~~l~~~GV 274 (282)
T cd08605 250 G-----LELGTYGKLNNDAEAVERQADLGV 274 (282)
T ss_pred C-----cEEEEeCCCCCCHHHHHHHHHcCC
Confidence 5 3467776 46888899999885
No 316
>KOG4127 consensus Renal dipeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=20.79 E-value=3.1e+02 Score=26.45 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=24.1
Q ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHhhC
Q 025866 206 IHNVLDYVASLLDMTKEELAELSYRNAIRLFS 237 (247)
Q Consensus 206 l~~v~~~iA~~~~~s~e~l~~~~~~N~~~~f~ 237 (247)
-|..+..+++ ++.+.+|+..+.-.|..|+|.
T Consensus 359 YP~LiaeLl~-r~~~~~E~~~l~g~N~LRV~~ 389 (419)
T KOG4127|consen 359 YPDLIAELLE-RGWWEEELIGLAGGNLLRVFR 389 (419)
T ss_pred hHHHHHHHHh-cCCcHHHHHHHhcchHHHHHH
Confidence 4555555654 678888888899999999995
No 317
>KOG4245 consensus Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=20.74 E-value=1e+02 Score=27.42 Aligned_cols=66 Identities=20% Similarity=0.078 Sum_probs=35.5
Q ss_pred eeeecccccCCCChhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeeccc
Q 025866 3 WVCFIFRFVQERTPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRA 78 (247)
Q Consensus 3 ~~g~hP~~~~~~~~~~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~~a 78 (247)
++|.-|..+.+.. .+++++.+.+-.+-++ |||-.-. +-+++.|. |=-.-.+|.++.+.+.+|--+.
T Consensus 69 ~lgtlpmn~~e~a---vee~~rcvk~lg~~g~-eigshv~----e~~ld~~d--~~ply~~~e~l~~~lfvhpwdm 134 (297)
T KOG4245|consen 69 GLGTLPMNAPELA---VEEMERCVKELGFKGF-EIGSHVA----EKDLDAQD--FFPLYAAAEELKCSLFVHPWDM 134 (297)
T ss_pred ccCccCCcCHHHH---HHHHHHHHHHcCCCce-eeccccc----cccCchHH--HhHHHHHHHhheeeEEecchhh
Confidence 4556666555443 3455554443222233 4553322 22344443 3344577889999999997653
No 318
>smart00760 Bac_DnaA_C Bacterial dnaA protein helix-turn-helix domain. Could be involved in DNA-binding.
Probab=20.71 E-value=1.1e+02 Score=20.82 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=17.7
Q ss_pred HHHHHHHHHHccCCCHHHHHH
Q 025866 206 IHNVLDYVASLLDMTKEELAE 226 (247)
Q Consensus 206 l~~v~~~iA~~~~~s~e~l~~ 226 (247)
+..+++.+|+..|++++++..
T Consensus 2 ~~~I~~~Va~~~~i~~~~i~s 22 (60)
T smart00760 2 IEEIIEAVAEYFGVKPEDLKS 22 (60)
T ss_pred HHHHHHHHHHHhCCCHHHHhc
Confidence 567889999999999999743
No 319
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=20.69 E-value=5.5e+02 Score=22.35 Aligned_cols=53 Identities=11% Similarity=-0.052 Sum_probs=34.1
Q ss_pred hHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeec
Q 025866 17 NWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCV 76 (247)
Q Consensus 17 ~~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~ 76 (247)
..++.++..+..+.+.+ +.++.+ ..+.....+..++..+++++++.+++|+.+
T Consensus 27 ~~~~~l~~al~~G~v~~-----vQlR~K--~l~~~~~~~~a~~l~~l~~~~gv~liINd~ 79 (221)
T PRK06512 27 ELAKLLRAALQGGDVAS-----VILPQY--GLDEATFQKQAEKLVPVIQEAGAAALIAGD 79 (221)
T ss_pred cHHHHHHHHHcCCCccE-----EEEeCC--CCCHHHHHHHHHHHHHHHHHhCCEEEEeCH
Confidence 34566666665432211 223322 234556678888899999999999999975
No 320
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=20.41 E-value=2.7e+02 Score=27.23 Aligned_cols=110 Identities=19% Similarity=0.133 Sum_probs=58.5
Q ss_pred ccccCCCChhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHH--cCCceEEeecccHHHHHHH
Q 025866 8 FRFVQERTPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKE--LKRPASIHCVRAFGDLLEI 85 (247)
Q Consensus 8 P~~~~~~~~~~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~--~~lpv~lH~~~a~~~~l~i 85 (247)
|+.--...++.++.|..+-++ ...-|+-+.+|-|.+ ....+.-++.++++++-.+. .|-|++-|-++...++++-
T Consensus 20 pr~G~~~~~e~~~~l~~l~~~-g~~dvl~ltiDsytr--~~~~~~a~~~l~~~~~~~~~~lnG~P~v~~g~~~~R~l~~~ 96 (428)
T cd00245 20 PRAGFPLLEEHIELLRTLQEE-GAADVLPLTIDSYTR--VNDYEEAEEGLEESIKAGKSLLNGFPIVNHGVKTCRKLLEG 96 (428)
T ss_pred CCCCCCCHHHHHHHHHHHHhc-CCCCeeccccccchh--hhhhHHHHHHHHhhhhcCccccCCCCcccccHHHHHHHHHh
Confidence 443333345555555555444 345678899998863 22334434455555433222 6799999998777777665
Q ss_pred HHhcCCCCCcE-EEEeCCCCHHHHHHHHHCCCeeeecccccc
Q 025866 86 MKSVGPFPDGV-IIHSYLGSAEMVPELSKLGAYFSFSGFLMS 126 (247)
Q Consensus 86 Lk~~~~~~~~~-I~H~fsGs~~~~~~~l~~G~~~Si~~~i~~ 126 (247)
. + .| + +=|+-......++-++..|+.-.=+|.+++
T Consensus 97 ~-~---~P--lqvRhGt~d~~~l~e~~~a~g~~a~egg~isy 132 (428)
T cd00245 97 V-D---FP--VQVRHGTPDARLLAEIAIASGFDATEGGPISY 132 (428)
T ss_pred C-C---CC--EeeccCCccHHHHHHHHHHhCcccccccceee
Confidence 4 2 22 3 336433333334444444543333444443
No 321
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=20.36 E-value=3.4e+02 Score=19.49 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=27.5
Q ss_pred hhHHHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEe
Q 025866 16 PNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIH 74 (247)
Q Consensus 16 ~~~l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH 74 (247)
.+.++.+.+++.+.++.+|| ||....-.+. .....+ .-|.+ .+.+.+++||.+-
T Consensus 37 ~~~~~~l~~~i~~~~~~~i~-Ig~pg~v~g~-~~~~~~-~~l~~--~l~~~~~~pv~~~ 90 (99)
T smart00732 37 EADAARLKKLIKKYQPDLIV-IGLPLNMNGT-ASRETE-EAFAE--LLKERFNLPVVLV 90 (99)
T ss_pred chHHHHHHHHHHHhCCCEEE-EeCCcCCCCC-cCHHHH-HHHHH--HHHHhhCCcEEEE
Confidence 45577888888775555555 5554432221 111112 22222 2344678887754
No 322
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=20.29 E-value=64 Score=20.74 Aligned_cols=22 Identities=9% Similarity=0.226 Sum_probs=11.7
Q ss_pred HHHHHHccCCCHHHHHHHHHHH
Q 025866 210 LDYVASLLDMTKEELAELSYRN 231 (247)
Q Consensus 210 ~~~iA~~~~~s~e~l~~~~~~N 231 (247)
+..||+..|+|...|.+.+.+|
T Consensus 24 i~~IA~~~gvsr~TvyR~l~~~ 45 (45)
T PF02796_consen 24 IAEIAKQFGVSRSTVYRYLNKN 45 (45)
T ss_dssp HHHHHHHTTS-HHHHHHHHCC-
T ss_pred HHHHHHHHCcCHHHHHHHHhcC
Confidence 3455666666666666655443
No 323
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=20.17 E-value=1e+02 Score=28.17 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=29.1
Q ss_pred HHHHHHHhhcCCceEEEeecCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCceEEeec
Q 025866 19 FSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCV 76 (247)
Q Consensus 19 l~~l~~~l~~~~~~aIGEIGLD~~~~~~~~~~~~Q~~vf~~qL~lA~~~~lpv~lH~~ 76 (247)
++....++++-.|.+ |=+||... +-..-...+++.++-|+++++-|.+|-.
T Consensus 108 ~~~~f~~~~~~Gv~G---vKidF~~~----d~Q~~v~~y~~i~~~AA~~~LmvnfHg~ 158 (273)
T PF10566_consen 108 LDEAFKLYAKWGVKG---VKIDFMDR----DDQEMVNWYEDILEDAAEYKLMVNFHGA 158 (273)
T ss_dssp HHHHHHHHHHCTEEE---EEEE--SS----TSHHHHHHHHHHHHHHHHTT-EEEETTS
T ss_pred HHHHHHHHHHcCCCE---EeeCcCCC----CCHHHHHHHHHHHHHHHHcCcEEEecCC
Confidence 355555555544444 34555532 1233356788888888888888888864
No 324
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=20.13 E-value=1.7e+02 Score=19.97 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=21.2
Q ss_pred CcchhHHHHHHHHHHccCCCHHHHHHHHHH
Q 025866 201 NHPANIHNVLDYVASLLDMTKEELAELSYR 230 (247)
Q Consensus 201 n~P~~l~~v~~~iA~~~~~s~e~l~~~~~~ 230 (247)
+.|.++.++++.+++..+++++++.+-+..
T Consensus 27 ~g~~t~~ei~~~l~~~y~~~~~~~~~dv~~ 56 (68)
T PF05402_consen 27 DGPRTVEEIVDALAEEYDVDPEEAEEDVEE 56 (68)
T ss_dssp -SSS-HHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 456789999999999999999987665544
Done!